Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 30 of 144
Found at i:7363566 original size:30 final size:31
Alignment explanation
Indices: 7363532--7363595 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7363522 TAGGTACCAG
*
7363532 ATTAAAAAAA-ATATCAAGTTCA-AGTATCAA
1 ATTAAAAAAATATATCAAATTCAGA-TATCAA
*
7363562 ATTAAAAAAATATATTAAATTCAGATATCAA
1 ATTAAAAAAATATATCAAATTCAGATATCAA
7363593 ATT
1 ATT
7363596 TCATATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 10 0.33
31 19 0.63
32 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (31 bp):
ATTAAAAAAATATATCAAATTCAGATATCAA
Found at i:7364120 original size:6 final size:6
Alignment explanation
Indices: 7364109--7364211 Score: 206
Period size: 6 Copynumber: 17.2 Consensus size: 6
7364099 TTGCAACCAT
7364109 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA
1 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA
7364157 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA
1 CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA CCCTCA
7364205 CCCTCA C
1 CCCTCA C
7364212 TTGACTTCTC
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 97 1.00
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCTCA
Found at i:7373830 original size:41 final size:41
Alignment explanation
Indices: 7373765--7373860 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
7373755 GAATTTTATT
7373765 TTAACAAGAATTCTAATCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAATCACCCAATTCTAACAATCTCCACC
* *
7373806 TTAACAAGAATTCTAGTCATCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAATCACCCAATTCTAACAATCTCCACC
*
7373847 TTGACAAGAATTCT
1 TTAACAAGAATTCT
7373861 CTACGAACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.29
Consensus pattern (41 bp):
TTAACAAGAATTCTAATCACCCAATTCTAACAATCTCCACC
Found at i:7373872 original size:17 final size:17
Alignment explanation
Indices: 7373850--7373888 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7373840 CTCCACCTTG
* *
7373850 ACAAGAATTCTCTACGA
1 ACAAGAACTCTCAACGA
7373867 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
7373884 ACAAG
1 ACAAG
7373889 TTCTCCACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Found at i:7380707 original size:40 final size:40
Alignment explanation
Indices: 7380652--7380753 Score: 134
Period size: 40 Copynumber: 2.5 Consensus size: 40
7380642 TTTTGTTGCT
* *
7380652 ATCCTTTTCGACCTTTTCATTTGTTATCCTTTCAG-ATAAC
1 ATCCTTTTCAACCTTTTCATTTCTTATCC-TTCAGAATAAC
* * * *
7380692 ATCCTTTTTAACCTTTTAATTTCTTATCCTTCCGAATAAT
1 ATCCTTTTCAACCTTTTCATTTCTTATCCTTCAGAATAAC
7380732 ATCCTTTTCAACCTTTTCATTT
1 ATCCTTTTCAACCTTTTCATTT
7380754 ATTCGGAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 4 0.08
40 49 0.92
ACGTcount: A:0.22, C:0.25, G:0.04, T:0.50
Consensus pattern (40 bp):
ATCCTTTTCAACCTTTTCATTTCTTATCCTTCAGAATAAC
Found at i:7394368 original size:161 final size:161
Alignment explanation
Indices: 7394098--7394596 Score: 743
Period size: 161 Copynumber: 3.1 Consensus size: 161
7394088 AGGCATCCAG
* * * * * *
7394098 CAGTCAAGGGATTAAATTGTAAATCTTGAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAATAAAAT-AAAGT
*** * *
7394163 TGATTT-GGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATGCATAAATAA-CAAAAA
65 TGATTTGGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGC-CAAA
7394226 AAATGACACGTGGCAGCCTCTGGTACAGTCAAA
129 AAATGACACGTGGCAGCCTCTGGTACAGTCAAA
*
7394259 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCATAATAAAAATAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAAT-AAAATAAAGT
7394324 TGATTTGGGGATTAAATTAAAACAAATT-AAAATGTCAGGGACTAAATGCATAAATAAGCCAAAA
65 TGATTTGGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAA
*
7394388 AGTGACACGTGGCAGCCTCTGGTACAGTCAAA
130 AATGACACGTGGCAGCCTCTGGTACAGTCAAA
* *
7394420 CAGTCAAAGGACTAGTTTATAAACCTTGAAAAGTTCTTGGGCCAATTTCGTAATTAAAATAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAA-TAAAATAAAGT
* * * *
7394485 TGATTTGGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAATTACAGAAATAATCCAAAA
65 TGATTTGGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAA
* *
7394550 AATGACACGTGACAGCCTCTAGTACAGTCAAA
130 AATGACACGTGGCAGCCTCTGGTACAGTCAAA
*
7394582 TAGTCAAAGGACTAA
1 CAGTCAAAGGACTAA
7394597 ATTGAAAGCT
Statistics
Matches: 308, Mismatches: 25, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
161 207 0.67
162 101 0.33
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (161 bp):
CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAATAAAATAAAGTT
GATTTGGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAAA
ATGACACGTGGCAGCCTCTGGTACAGTCAAA
Found at i:7395205 original size:15 final size:16
Alignment explanation
Indices: 7395185--7395222 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7395175 CATTTTCTTC
7395185 TTTTTACTTCTTT-TT
1 TTTTTACTTCTTTATT
*
7395200 TTTTTATTTCTTTATT
1 TTTTTACTTCTTTATT
7395216 TCTTTTA
1 T-TTTTA
7395223 TTTAAAACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
16 3 0.15
17 5 0.25
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTACTTCTTTATT
Found at i:7395509 original size:23 final size:24
Alignment explanation
Indices: 7395466--7395518 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
7395456 CCCTTCATTT
*
7395466 TTTATTGTTTTATTATCATTATTA
1 TTTATTGTATTATTATCATTATTA
7395490 TTTATT-TATTATTA-CTATTATTA
1 TTTATTGTATTATTATC-ATTATTA
7395513 TTTATT
1 TTTATT
7395519 ACCATTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.74
24 6 0.22
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (24 bp):
TTTATTGTATTATTATCATTATTA
Found at i:7396218 original size:18 final size:17
Alignment explanation
Indices: 7396187--7396220 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
7396177 TTTGGACTTT
*
7396187 AATTTAAATTAATTTAA
1 AATTTAAATAAATTTAA
7396204 AATTTAAAATAAATTTA
1 AATTT-AAATAAATTTA
7396221 GACTCAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTTAAATAAATTTAA
Found at i:7396737 original size:76 final size:76
Alignment explanation
Indices: 7396637--7396878 Score: 290
Period size: 76 Copynumber: 3.3 Consensus size: 76
7396627 AAAGGCTTGA
7396637 TATCCAGCTCTA-TTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
1 TATCCA-CTCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAG
7396701 GATAGGAAATGAT
65 GATAGGAAATG-T
* * *
7396714 TTTGCTCT-TACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
1 TATCCACTCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
*
7396778 ATAGGACATGT
66 ATAGGAAATGT
* * *
7396789 TATCCACTCTACTTCAATTTCA-AGAGGATGAC--GTTA--C-TCT-TACTTCAATTTC-AGA-G
1 TATCCACTCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
* **
7396845 ATGAAGACGTGT
66 AT-AGGAAATGT
7396857 TATCCACTCTACTTCAATTTCA
1 TATCCACTCTACTTCAATTTCA
7396879 AGCGGATGGG
Statistics
Matches: 150, Mismatches: 12, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
67 3 0.02
68 32 0.21
69 12 0.08
70 2 0.01
71 1 0.01
73 4 0.03
75 16 0.11
76 77 0.51
77 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (76 bp):
TATCCACTCTACTTCAATTTCAGAGATGAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
ATAGGAAATGT
Found at i:7397012 original size:75 final size:75
Alignment explanation
Indices: 7396825--7397619 Score: 1019
Period size: 75 Copynumber: 11.0 Consensus size: 75
7396815 GATGACGTTA
* * *
7396825 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATGGGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
7396890 AAAGATCTTG
66 AAAGATCTTG
*
7396900 CTCTTACTTCAATTTC------AAAGACTTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
7396959 AAAGATCTTG
66 AAAGATCTTG
*
7396969 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAAAGGAT--G-
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
* *
7397031 -ACG---TTA
66 AAAGATCTTG
* * * *
7397037 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCAACTCTACTTCAATTTCAAGCGGATGGGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
7397102 AAAGATCTTG
66 AAAGATCTTG
* *
7397112 CTCTTACTTCAATTTC------AAAGACTTGTTATCCACTTTACTTCAATTTCAAGAGGATAGGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
*
7397171 AAATATCTTG
66 AAAGATCTTG
* *
7397181 CTCTTACTTCAATTTCAGAGATAAAGACGTGTCATTCACTCTACTTCAATTTCAAGAGGAT----
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
*
7397242 ---GATGTTG
66 AAAGATCTTG
* *
7397249 CCCTTACTTCAATTTCAGAGATAAAGACGTGCTATCCAACTCTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATAGG
*
7397314 AAAAGGTCCTTG
65 AAAAGAT-CTTG
*
7397326 CTCTTACTTCAATTTCAGAGGTAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT--G-
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
* *
7397388 -ACG---TTA
66 AAAGATCTTG
* *
7397394 CTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAGCGGATGGG
1 CTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGG
7397458 AAAAGATCTTG
65 AAAAGATCTTG
* *
7397469 CTCTTACTTCAATTTCAGAGGTAAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
*
7397534 AAAGGTCTTG
66 AAAGATCTTG
* * *
7397544 CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTCAATTTCAAGAGGATAGG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATAGG
**
7397609 AACTGATCTTG
65 AAAAGATCTTG
7397620 GTGCGGTCTG
Statistics
Matches: 627, Mismatches: 55, Indels: 75
0.83 0.07 0.10
Matches are distributed among these distances:
68 154 0.25
69 154 0.25
70 2 0.00
71 2 0.00
72 6 0.01
73 1 0.00
74 4 0.01
75 207 0.33
76 60 0.10
77 37 0.06
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (75 bp):
CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGA
AAAGATCTTG
Found at i:7397023 original size:212 final size:213
Alignment explanation
Indices: 7396760--7397619 Score: 1148
Period size: 212 Copynumber: 4.0 Consensus size: 213
7396750 TATCCAACTC
* *
7396760 TACTTCAATTTCAAGAGGAT-AGGACATGTTATCCACTCTACTTCAATTTCAAGAGGATGACGTT
1 TACTTCAATTTC-AGA-GATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACGTT
* * *
7396824 ACTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGATGGG
64 ACTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGG
7396889 AAAAGATCTTGCTCTTACTTCAATTTC-AAAGACTTGTTATCCACTCTACTTCAATTTCAAGAGG
129 AAAAGATCTTGCTCTTACTTCAATTTCAAAAGACTTGTTATCCACTCTACTTCAATTTCAAGAGG
7396953 ATAGGAAAAGATCTTGCTCT
194 ATAGGAAAAGATCTTGCTCT
*
7396973 TACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAAAGGATGACGTTAC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACGTTAC
* * * *
7397038 TCTTACTTCAATTTCAGAGATGAAGACGTGTTATCAACTCTACTTCAATTTCAAGCGGATGGGAA
66 TCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGAA
*
7397103 AAGATCTTGCTCTTACTTCAATTTC-AAAGACTTGTTATCCACTTTACTTCAATTTCAAGAGGAT
131 AAGATCTTGCTCTTACTTCAATTTCAAAAGACTTGTTATCCACTCTACTTCAATTTCAAGAGGAT
*
7397167 AGGAAAATATCTTGCTCT
196 AGGAAAAGATCTTGCTCT
* * * *
7397185 TACTTCAATTTCAGAGATAAAGACGTGTCATTCACTCTACTTCAATTTCAAGAGGATGATGTTGC
1 TACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACGTTAC
* *
7397250 CCTTACTTCAATTTCAGAGATAAAGACGTGCTATCCAACTCTACTTCAATTTCAAGAGGATAGGA
66 TCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATAGGA
* *
7397315 AAAGGTCCTTGCTCTTACTTCAATTTCAGAGGTAAAGACGTGTTATCCACTCTACTTCAATTTCA
130 AAAGAT-CTTGCTCTTACTTCAATTTC--A---AAAGACTTGTTATCCACTCTACTTCAATTTCA
* *
7397380 AGAGGAT--G--ACG---TTACTCT
189 AGAGGATAGGAAAAGATCTTGCTCT
* *
7397398 TACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAGCGGATGGGAAAA
1 TACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT--G--AC
* * *
7397462 GATCTTGCTCTTACTTCAATTTCAGAGGTAAAGATGTGTTATCCACTCTACTTCAATTTCAAGAG
61 G---TTACTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
* * *
7397527 GATAGGAAAAGGTCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTTTACTTC
123 GATAGGAAAAGATCTTGCTCTTACTTCAATTTC----A-AAAGACTTGTTATCC-ACTCTACTTC
**
7397592 AATTTCAAGAGGATAGGAACTGATCTTG
182 AATTTCAAGAGGATAGGAAAAGATCTTG
7397620 GTGCGGTCTG
Statistics
Matches: 583, Mismatches: 37, Indels: 41
0.88 0.06 0.06
Matches are distributed among these distances:
211 3 0.01
212 282 0.48
213 99 0.17
214 23 0.04
215 1 0.00
216 1 0.00
217 2 0.00
218 35 0.06
219 57 0.10
220 76 0.13
221 1 0.00
223 1 0.00
226 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (213 bp):
TACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACGTTAC
TCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATAGGAA
AAGATCTTGCTCTTACTTCAATTTCAAAAGACTTGTTATCCACTCTACTTCAATTTCAAGAGGAT
AGGAAAAGATCTTGCTCT
Found at i:7409701 original size:29 final size:29
Alignment explanation
Indices: 7409641--7409924 Score: 149
Period size: 29 Copynumber: 9.7 Consensus size: 29
7409631 GGATACCCGA
* *
7409641 GGGT-AAAATGGTAATTTTGGTGAAATCAG
1 GGGTAAAAATGGTAATTTTGGTGAAGT-TG
*
7409670 GGGT-GAAATGGTAATTTTTGGTGAAGTTG
1 GGGTAAAAATGGTAA-TTTTGGTGAAGTTG
*
7409699 GGGTTAAAAATGG-AATTTTGG-AAAGTTCG
1 GGG-TAAAAATGGTAATTTTGGTGAAGTT-G
** * * *
7409728 GGGGGAAAATGGTAATTTTTAGTGAAATCG
1 GGGTAAAAATGGTAA-TTTTGGTGAAGTTG
* *
7409758 AGGTTAAAAATGG-AATTTTGG-AAAGTTCG
1 -GGGTAAAAATGGTAATTTTGGTGAAGTT-G
* *
7409787 AGGGTAAAAATGGTAATTTTTGGTGAAATCAG
1 -GGGTAAAAATGGTAA-TTTTGGTGAAGT-TG
* * **
7409819 GGTTAAAAAT-GAAATTTT-GAAAAGTTCGG
1 GGGTAAAAATGGTAATTTTGGTGAAGTT--G
***
7409848 GGGT-AAAATGGTAATTTTGGTGAAACCG
1 GGGTAAAAATGGTAATTTTGGTGAAGTTG
*
7409876 GGGTTAAAAATGG-AATTTTGG-AAAGTTCG
1 GGG-TAAAAATGGTAATTTTGGTGAAGTT-G
* *
7409905 GGGGATAAAATGATAATTTT
1 GGGTA-AAAATGGTAATTTT
7409925 TGGACTGTTT
Statistics
Matches: 192, Mismatches: 41, Indels: 43
0.70 0.15 0.16
Matches are distributed among these distances:
28 31 0.16
29 81 0.42
30 43 0.22
31 33 0.17
32 4 0.02
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (29 bp):
GGGTAAAAATGGTAATTTTGGTGAAGTTG
Found at i:7409707 original size:59 final size:57
Alignment explanation
Indices: 7409645--7409927 Score: 327
Period size: 59 Copynumber: 4.8 Consensus size: 57
7409635 ACCCGAGGGT
* * *
7409645 AAAATGGTAATTTTGGTGAAA-TCAGGGGTGAAATGGTAATTTTTGGTGAAGTTGGGGTTA
1 AAAATGG-AATTTT-G-GAAAGTC-GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTA
* * *
7409705 AAAATGGAATTTTGGAAAGTTCGGGGGGAAAATGGTAATTTTTAGTGAAATCGAGGTTA
1 AAAATGGAATTTTGGAAAG-TC-GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
7409764 AAAATGGAATTTTGGAAAGTTCGAGGGTAAAAATGGTAATTTTTGGTGAAATCAGGGTTA
1 AAAATGGAATTTTGGAAAG-TCG-GGGT-AAAATGGTAATTTTTGGTGAAATCGGGGTTA
* * *
7409824 AAAATGAAATTTTGAAAAGTTCGGGGGTAAAATGGTAA-TTTTGGTGAAACCGGGGTTA
1 AAAATGGAATTTTGGAAAG-TC-GGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTA
*
7409882 AAAATGGAATTTTGGAAAGTTCGGGGGATAAAATGATAATTTTTGG
1 AAAATGGAATTTTGGAAAG-TC-GGGG-TAAAATGGTAATTTTTGG
7409928 ACTGTTTGGG
Statistics
Matches: 198, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
57 4 0.02
58 45 0.23
59 83 0.42
60 65 0.33
61 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (57 bp):
AAAATGGAATTTTGGAAAGTCGGGGTAAAATGGTAATTTTTGGTGAAATCGGGGTTA
Found at i:7409822 original size:119 final size:118
Alignment explanation
Indices: 7409675--7409927 Score: 382
Period size: 119 Copynumber: 2.1 Consensus size: 118
7409665 ATCAGGGGTG
* ** * *
7409675 AAATGGTAATTTTTGGTGAAGTTGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGGAAAATGG
1 AAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGAAATTTTGAAAAGTTCGGGGGGAAAATGG
* *
7409740 TAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCGAGGG-TAA
66 TAA-TTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGAT-A
*
7409794 AAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGAAATTTTGAAAAGTTCGGGGGTAAAATGG
1 AAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGAAATTTTGAAAAGTTCGGGGGGAAAATGG
* *
7409859 TAATTTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGATA
66 TAATTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGATA
*
7409912 AAATGATAATTTTTGG
1 AAATGGTAATTTTTGG
7409928 ACTGTTTGGG
Statistics
Matches: 122, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
118 59 0.48
119 63 0.52
ACGTcount: A:0.35, C:0.03, G:0.30, T:0.32
Consensus pattern (118 bp):
AAATGGTAATTTTTGGTGAAATCAGGGTTAAAAATGAAATTTTGAAAAGTTCGGGGGGAAAATGG
TAATTTTAGTGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGATA
Found at i:7410268 original size:162 final size:161
Alignment explanation
Indices: 7409997--7410496 Score: 718
Period size: 162 Copynumber: 3.1 Consensus size: 161
7409987 AGGCATCCAG
* * * * * *
7409997 CAGTCAAGGGATTAAATTGTAAATCTTGAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAATAAAAT-AAAGT
* *** *
7410062 TAATTTGGGATTAAATTAAAACAAATTAAAAATAAAAAGGACTAAATGCATAAATAAGCCAAAAA
65 TGATTTGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAAA
* *
7410127 AGTAACACGTAGCAGCCTCTGGTACAGTCAAA
130 AGTGACACGTGGCAGCCTCTGGTACAGTCAAA
*
7410159 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCATAATAAAAATAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAAT-AAAATAAAGT
7410224 TGATTTGGGGATTAAATTAAAACAAATT-AAAATGTCAGGGACTAAATGCATAAATAAGCC-AAA
65 TGATTT-GGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAA
*
7410287 AAGTGACACATGGCAGCCTCTGGTACAGTCAAA
129 AAGTGACACGTGGCAGCCTCTGGTACAGTCAAA
* * *
7410320 CAGTCAAAGGACTAGTTTATAAACCTTGAAAAGTTCTTGGGCCAATTTTGTAATTAAAATAAAGT
1 CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAA-TAAAATAAAGT
* * * * *
7410385 TGATTTAGGGATTAAATTAAAATAAATTAAAAATGTCAGGGACTAATTGCAGAAATAATCTAAAA
65 TGATTT-GGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAA
7410450 AA-TGACACGTGGCAGCCTCTGGTACAGTCAAA
129 AAGTGACACGTGGCAGCCTCTGGTACAGTCAAA
*
7410482 TAGTCAAAGGACTAA
1 CAGTCAAAGGACTAA
7410497 ATTGAAAGCT
Statistics
Matches: 305, Mismatches: 28, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
161 118 0.39
162 157 0.51
163 30 0.10
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (161 bp):
CAGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTCGTAATAAAATAAAGTT
GATTTGGGATTAAATTAAAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCCAAAAAA
GTGACACGTGGCAGCCTCTGGTACAGTCAAA
Found at i:7411406 original size:23 final size:24
Alignment explanation
Indices: 7411363--7411415 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
7411353 CCCTTCATTT
*
7411363 TTTATTGTTTTATTATCATTATTA
1 TTTATTGTATTATTATCATTATTA
7411387 TTTATT-TATTATTA-CTATTATTA
1 TTTATTGTATTATTATC-ATTATTA
7411410 TTTATT
1 TTTATT
7411416 ACCATTAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 1 0.04
23 20 0.74
24 6 0.22
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (24 bp):
TTTATTGTATTATTATCATTATTA
Found at i:7412093 original size:6 final size:6
Alignment explanation
Indices: 7412079--7412162 Score: 75
Period size: 6 Copynumber: 14.3 Consensus size: 6
7412069 TGGACTTTGG
* * * * * *
7412079 ATTTTA ATTTAA A-TTAA TTTTAA ATTTAA A-ATAA ATTTAG ACTCAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
7412125 ATTCAA ATTTAA AGTTT-A ATTTAA ATTTAA ATTTAA AT
1 ATTTAA ATTTAA A-TTTAA ATTTAA ATTTAA ATTTAA AT
7412163 AAATCTAAAT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 11 0.17
6 49 0.78
7 3 0.05
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (6 bp):
ATTTAA
Found at i:7412171 original size:16 final size:16
Alignment explanation
Indices: 7412079--7412201 Score: 84
Period size: 17 Copynumber: 7.2 Consensus size: 16
7412069 TGGACTTTGG
*
7412079 ATTTTAATTTAAATTAA
1 ATTTAAATTTAAA-TAA
*
7412096 TTTTAAATTTAAAATAA
1 ATTTAAATTT-AAATAA
* * *
7412113 ATTTAGACTCAAATTCAA
1 ATTTAAATTTAAA-T-AA
*
7412131 ATTTAAAGTTTAATTTAA
1 ATTTAAA-TTTAA-ATAA
7412149 ATTTAAATTTAAATAA
1 ATTTAAATTTAAATAA
* * *
7412165 ATCTAAATTCATATCAA
1 ATTTAAATTTAAAT-AA
*
7412182 ATTTAATTTTAAAATAA
1 ATTTAAATTT-AAATAA
7412199 ATT
1 ATT
7412202 AAAAAAAAAG
Statistics
Matches: 81, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
16 17 0.21
17 37 0.46
18 23 0.28
19 4 0.05
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTTAAATTTAAATAA
Found at i:7417192 original size:86 final size:86
Alignment explanation
Indices: 7417033--7417192 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 86
7417023 TTTTTTGAAA
* * * *
7417033 AAGTTTGAGGGTCTTTTTATGTATTTTGAAAGTTCAAATAACAAATTGAGTGTAAAATAAAAGCA
1 AAGTTTGAGGGTCTTTTTATGTATTTTGAAAGTTCAAATAACAAAGTGAATGTAAAAAAAAAGAA
7417098 GGGACTTAAATTTTTTTTTTT
66 GGGACTTAAATTTTTTTTTTT
* * *
7417119 AAGTTTGAGGGT-TTTTT-TGATCATTTTGAAAGTTCAAGTACCTAAGTGAATGTAAAAAAAAAG
1 AAGTTTGAGGGTCTTTTTATG-T-ATTTTGAAAGTTCAAATAACAAAGTGAATGTAAAAAAAAAG
7417182 TAAGGG-CTTAA
64 -AAGGGACTTAA
7417193 TTGCTTTTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
84 2 0.03
85 6 0.09
86 52 0.81
87 4 0.06
ACGTcount: A:0.36, C:0.06, G:0.19, T:0.38
Consensus pattern (86 bp):
AAGTTTGAGGGTCTTTTTATGTATTTTGAAAGTTCAAATAACAAAGTGAATGTAAAAAAAAAGAA
GGGACTTAAATTTTTTTTTTT
Found at i:7420517 original size:27 final size:27
Alignment explanation
Indices: 7420487--7420557 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
7420477 TTCAGCAATA
*
7420487 ACAGAATATCACTCGTTCAAGCC-GTAT
1 ACAGAATATCACTCATTCAAGCCAG-AT
* **
7420514 ACAGAATATCATTCATTTGAGCCAGAT
1 ACAGAATATCACTCATTCAAGCCAGAT
7420541 ACAGAATATCACTCATT
1 ACAGAATATCACTCATT
7420558 GCTCAGACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.28
Consensus pattern (27 bp):
ACAGAATATCACTCATTCAAGCCAGAT
Found at i:7420833 original size:27 final size:27
Alignment explanation
Indices: 7420799--7420923 Score: 151
Period size: 27 Copynumber: 4.6 Consensus size: 27
7420789 TTCAGCATTA
* *
7420799 ACAGAATATCACTCGTTCGAGCCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGAT
* * * *
7420826 ACATAATATCGCTCATTTGGGTCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGAT
*
7420853 ACAGAATATCGCTCATTCTAGCCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGAT
* ** *
7420880 ACAGAATATCGTTTTTTCGAGTCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGAT
7420907 ACAGAATATCGCTCATT
1 ACAGAATATCGCTCATT
7420924 GCTTAGACTT
Statistics
Matches: 79, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (27 bp):
ACAGAATATCGCTCATTCGAGCCAGAT
Found at i:7420876 original size:54 final size:54
Alignment explanation
Indices: 7420799--7420923 Score: 171
Period size: 54 Copynumber: 2.3 Consensus size: 54
7420789 TTCAGCATTA
* * * *
7420799 ACAGAATATCACTCGTTCGAGCCAGATACATAATATCGCTCATTT-GGGTCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGATACAGAATATCG-TCATTTCGAGTCAGAT
* **
7420853 ACAGAATATCGCTCATTCTAGCCAGATACAGAATATCGTTTTTTCGAGTCAGAT
1 ACAGAATATCGCTCATTCGAGCCAGATACAGAATATCGTCATTTCGAGTCAGAT
7420907 ACAGAATATCGCTCATT
1 ACAGAATATCGCTCATT
7420924 GCTTAGACTT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
53 4 0.06
54 59 0.94
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.30
Consensus pattern (54 bp):
ACAGAATATCGCTCATTCGAGCCAGATACAGAATATCGTCATTTCGAGTCAGAT
Found at i:7424436 original size:34 final size:31
Alignment explanation
Indices: 7424369--7424503 Score: 116
Period size: 34 Copynumber: 4.4 Consensus size: 31
7424359 TTATAAAAAT
*
7424369 TTAATTTAATAATTATCTTAATAATATTTTA
1 TTAATTTAATAATTATCTTAATAATATTCTA
*
7424400 TTAATTTAATATTTATCTTGTAGATAATATTCTA
1 TTAATTTAATAATTATC-T-TA-ATAATATTCTA
* * **
7424434 TTAATTTAATAA-AAT-TTAATATTA-AAT-
1 TTAATTTAATAATTATCTTAATAATATTCTA
* * * *
7424461 TTAATCTAATATTTATCTTATTAACTATTATA
1 TTAATTTAATAATTATCTTAATAA-TATTCTA
7424493 TTAATTTAATA
1 TTAATTTAATA
7424504 TTAAAGTGAT
Statistics
Matches: 82, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
27 10 0.12
28 3 0.04
29 10 0.12
30 4 0.05
31 19 0.23
32 11 0.13
33 4 0.05
34 21 0.26
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (31 bp):
TTAATTTAATAATTATCTTAATAATATTCTA
Found at i:7436419 original size:164 final size:167
Alignment explanation
Indices: 7436133--7436622 Score: 564
Period size: 164 Copynumber: 2.9 Consensus size: 167
7436123 AATACCATAT
** * * ** * *
7436133 AATAAATAATGAAACGTAAGCCTTGAAATTAAGTAATCATGGTAATACATGAAA-ACATACGATA
1 AATAAA-AATGAAACGTAAGGGTTGAAACTAAGTAATTATAATAACACATGAAATATATACGATA
* * * * * *
7436197 TTAAAAATAAAAAA-ATATTAAATTATGAA-TAAAAACAAATTTTAAATACATCAATACATCATA
65 TTAAAATTAAAAAATAAATTAAATTAT-AAGTAAAAAGAAA-TTTAAACACATAAATACATCAAA
7436260 TAAACAATATTAAATGCATTATAATTATTTTT-AA-ACAC
128 TAAACAATATTAAATGCATTATAATTATTTTTAAATACAC
* *
7436298 AATAAAAATGAAACGTAAGGGTTGAAACTAAGTAATTACAATAACACATGAAATATATATGATAT
1 AATAAAAATGAAACGTAAGGGTTGAAACTAAGTAATTATAATAACACATGAAATATATACGATAT
* *
7436363 T-AAATTAAAAAATAAATTAAATTATAAGTAAAATGAAATTTAAACACGTAAATACATCAAATAA
66 TAAAATTAAAAAATAAATTAAATTATAAGTAAAAAGAAATTTAAACACATAAATACATCAAATAA
* * *
7436427 ATAATATTAAA-GACACTACAATTATTTTTAAATACAC
131 ACAATATTAAATG-CATTATAATTATTTTTAAATACAC
* *
7436464 AATAAAAATGAAACGTAAGGGTTGAAACTAAGTAATTATAATAACATATGAAATATGA-ACGGTA
1 AATAAAAATGAAACGTAAGGGTTGAAACTAAGTAATTATAATAACACATGAAATAT-ATACGATA
* * * * * *
7436528 TTAAAACTAAAAAAAATTAGATTAAATTATGAGTAAAACGAAATTTAAACATATAAATATATCAA
65 TTAAAA-T-TAAAAAA-TAAATTAAATTATAAGTAAAAAGAAATTTAAACACATAAATACATCAA
* * *
7436593 ATAAACAATACTAAATGTATTGTAATTATT
127 ATAAACAATATTAAATGCATTATAATTATT
7436623 GATGCAATCG
Statistics
Matches: 275, Mismatches: 38, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
163 1 0.00
164 97 0.35
165 37 0.13
166 64 0.23
167 4 0.01
168 1 0.00
169 6 0.02
170 64 0.23
171 1 0.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.30
Consensus pattern (167 bp):
AATAAAAATGAAACGTAAGGGTTGAAACTAAGTAATTATAATAACACATGAAATATATACGATAT
TAAAATTAAAAAATAAATTAAATTATAAGTAAAAAGAAATTTAAACACATAAATACATCAAATAA
ACAATATTAAATGCATTATAATTATTTTTAAATACAC
Found at i:7441367 original size:41 final size:41
Alignment explanation
Indices: 7441322--7441416 Score: 165
Period size: 40 Copynumber: 2.3 Consensus size: 41
7441312 CAAAACATTG
7441322 AAGCTTCAAAGTTTGCCTAAATTTCAAATGAATTCTTCACC
1 AAGCTTCAAAGTTTGCCTAAATTTCAAATGAATTCTTCACC
* *
7441363 AAGCTTC-AAGGTTGCCTAAATTTCATATGAATTCTTCACC
1 AAGCTTCAAAGTTTGCCTAAATTTCAAATGAATTCTTCACC
7441403 AAGCTTCAAAGTTT
1 AAGCTTCAAAGTTT
7441417 TTTTTTTCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 38 0.76
41 12 0.24
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.35
Consensus pattern (41 bp):
AAGCTTCAAAGTTTGCCTAAATTTCAAATGAATTCTTCACC
Found at i:7448230 original size:22 final size:23
Alignment explanation
Indices: 7448187--7448244 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
7448177 TAATTGATTT
*
7448187 AAAAAA-TAAAAAATGATCTCAC
1 AAAAAATTTAAAAATGATCTCAC
*
7448209 AAAAAATTTGAAAATGAT-TCAC
1 AAAAAATTTAAAAATGATCTCAC
* *
7448231 TAAAATTTTAAAAA
1 AAAAAATTTAAAAA
7448245 AAATTATTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 21 0.70
23 9 0.30
ACGTcount: A:0.60, C:0.09, G:0.05, T:0.26
Consensus pattern (23 bp):
AAAAAATTTAAAAATGATCTCAC
Found at i:7448245 original size:23 final size:24
Alignment explanation
Indices: 7448193--7448245 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
7448183 ATTTAAAAAA
7448193 TAAAAAATGATCTCACAAAAAATT
1 TAAAAAATGATCTCACAAAAAATT
* * *
7448217 T-GAAAATGAT-TCACTAAAATTT
1 TAAAAAATGATCTCACAAAAAATT
7448239 TAAAAAA
1 TAAAAAA
7448246 AATTATTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 11 0.46
23 12 0.50
24 1 0.04
ACGTcount: A:0.57, C:0.09, G:0.06, T:0.28
Consensus pattern (24 bp):
TAAAAAATGATCTCACAAAAAATT
Found at i:7450986 original size:43 final size:43
Alignment explanation
Indices: 7450860--7450974 Score: 203
Period size: 43 Copynumber: 2.7 Consensus size: 43
7450850 ATATGGGCTA
* **
7450860 GCACACGAGCATGTGCCAGGTCGTGTGTGTATATTGTTTTGGG
1 GCACACGGGCATGTGCCAGACCGTGTGTGTATATTGTTTTGGG
7450903 GCACACGGGCATGTGCCAGACCGTGTGTGTATATTGTTTTGGG
1 GCACACGGGCATGTGCCAGACCGTGTGTGTATATTGTTTTGGG
7450946 GCACACGGGCATGTGCCAGACCGTGTGTG
1 GCACACGGGCATGTGCCAGACCGTGTGTG
7450975 CATACTATTT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.17, C:0.20, G:0.36, T:0.28
Consensus pattern (43 bp):
GCACACGGGCATGTGCCAGACCGTGTGTGTATATTGTTTTGGG
Found at i:7454862 original size:45 final size:45
Alignment explanation
Indices: 7454757--7454848 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
7454747 TTTTAGTGTG
* * *
7454757 AAGATTTGATTTAATTGCGCTGACAACTTTACTCATATTATCTTTT
1 AAGA-TTGATTTAATTGCACTGACAACTTTACTCACATTATCTTCT
* *
7454803 CAGATTGATTTAATTGCACTGACATCTTTACTCACATTATC-TCT
1 AAGATTGATTTAATTGCACTGACAACTTTACTCACATTATCTTCT
7454847 AA
1 AA
7454849 TCTTAGTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
44 3 0.08
45 34 0.85
46 3 0.08
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.42
Consensus pattern (45 bp):
AAGATTGATTTAATTGCACTGACAACTTTACTCACATTATCTTCT
Found at i:7463146 original size:23 final size:23
Alignment explanation
Indices: 7463126--7463219 Score: 120
Period size: 23 Copynumber: 4.1 Consensus size: 23
7463116 GGCAACAGTA
7463126 GGCACACAAAGTGCTAAACAGA-
1 GGCACACAAAGTGCTAAACAGAG
* *
7463148 AGCACACACAGTGCTAAACAGAG
1 GGCACACAAAGTGCTAAACAGAG
*
7463171 GGCACACACAA-TGCTGAACAGAG
1 GGCACACA-AAGTGCTAAACAGAG
* *
7463194 GGCACACACAGTGCTGAACAGAG
1 GGCACACAAAGTGCTAAACAGAG
7463217 GGC
1 GGC
7463220 GCGCAAATGT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
22 21 0.33
23 41 0.65
24 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.27, T:0.09
Consensus pattern (23 bp):
GGCACACAAAGTGCTAAACAGAG
Found at i:7463214 original size:46 final size:45
Alignment explanation
Indices: 7463126--7463219 Score: 136
Period size: 46 Copynumber: 2.1 Consensus size: 45
7463116 GGCAACAGTA
7463126 GGCACACAAAGTGCTAAACAGAAGCACACACAGTGCTAAACAGAG
1 GGCACACAAAGTGCTAAACAGAAGCACACACAGTGCTAAACAGAG
* * *
7463171 GGCACACACAA-TGCTGAACAGAGGGCACACACAGTGCTGAACAGAG
1 GGCACACA-AAGTGCTAAACAGA-AGCACACACAGTGCTAAACAGAG
7463217 GGC
1 GGC
7463220 GCGCAAATGT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 18 0.41
46 26 0.59
ACGTcount: A:0.39, C:0.26, G:0.27, T:0.09
Consensus pattern (45 bp):
GGCACACAAAGTGCTAAACAGAAGCACACACAGTGCTAAACAGAG
Found at i:7463470 original size:16 final size:16
Alignment explanation
Indices: 7463441--7463487 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
7463431 TAAAAACATA
7463441 ATATTTCA-CATATAC
1 ATATTTCATCATATAC
* *
7463456 ATTTTTCATCATATAT
1 ATATTTCATCATATAC
*
7463472 ATATATCATCATATAC
1 ATATTTCATCATATAC
7463488 CTCTGCACTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTTCATCATATAC
Found at i:7466245 original size:15 final size:15
Alignment explanation
Indices: 7466213--7466252 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
7466203 TGCATTTCAC
7466213 TCTCTT-CTTCT-TT
1 TCTCTTCCTTCTCTT
7466226 T-TCTTCCTTCTCTT
1 TCTCTTCCTTCTCTT
7466240 TCTCTTCCTTCTC
1 TCTCTTCCTTCTC
7466253 CTTCATTTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
13 6 0.25
14 3 0.12
15 11 0.46
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTCTTCCTTCTCTT
Found at i:7496213 original size:25 final size:25
Alignment explanation
Indices: 7496175--7496228 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7496165 AAATGATATT
**
7496175 TGTAACTGCAACTGTACAATTGAAC
1 TGTAACTGCAACTGTACAATCAAAC
7496200 TGTAACTG-AGACTGTACAATCAAAC
1 TGTAACTGCA-ACTGTACAATCAAAC
7496225 TGTA
1 TGTA
7496229 TATGTTGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (25 bp):
TGTAACTGCAACTGTACAATCAAAC
Found at i:7501411 original size:13 final size:13
Alignment explanation
Indices: 7501393--7501417 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7501383 TTGCAGTGTT
7501393 TTTTTCTTTTTTC
1 TTTTTCTTTTTTC
7501406 TTTTTCTTTTTT
1 TTTTTCTTTTTT
7501418 TTGGGGGGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTCTTTTTTC
Found at i:7503068 original size:93 final size:94
Alignment explanation
Indices: 7502894--7503368 Score: 468
Period size: 93 Copynumber: 5.2 Consensus size: 94
7502884 AATTTTTCAT
* * ** *
7502894 CACACCTTCTCCCTTATGCTCTTTGTTTAACATAAATGGCCAAAAAAATCAAAATTTTCAT--CA
1 CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCC-AAAAAATCAAATTTTTCATCACA
* * *
7502957 CTCTTTTAATTTATCTATTTAATAATCGAG
65 CTCTTTTAATTTACCTATTTGATAATTGAG
* * *
7502987 TACACCTCCTCTCTTACACTTTTTGTTTAACATAAATGG-CAAACAAATCGAATTTTTCATCACA
1 CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAA-AAATCAAATTTTTCATCACA
7503051 CTCTTTTAA-TTACCTATTTGATAATTGAG
65 CTCTTTTAATTTACCTATTTGATAATTGAG
* * * * * ** *
7503080 CACACCCCCTCCCTTGCGCTCTTTGTTTAACATAAATAGTTAAAAAATCGAATTTTTCATCACAC
1 CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACAC
*
7503145 TTTTTTAATTTACCTATTTGATAATTGAG
66 TCTTTTAATTTACCTATTTGATAATTGAG
* * * * * *
7503174 CACACCT-CTCTCATACACTCTTTATTTAACCTAAATGGCCAAAAACTCAAATTTTTCATTACAT
1 CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACAC
* *
7503238 TATTTTAATTTACCTATTTGATAAATGAG
66 TCTTTTAATTTACCTATTTGATAATTGAG
* * *
7503267 CACA----CTC-C---CA---TTTGTTTAACATAAATGGTCAAATAATAGAAATTTTT-ATCA-A
1 CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAAT-CAAATTTTTCATCACA
*
7503319 GTTCTTTTAATTTACCTATTTGATAATTG-G
65 -CTCTTTTAATTTACCTATTTGATAATTGAG
*
7503349 -ACACACTCCTCCCTTACACT
1 CACAC-CTCCTCTCTTACACT
7503369 ATTTTTTGGT
Statistics
Matches: 319, Mismatches: 45, Indels: 37
0.80 0.11 0.09
Matches are distributed among these distances:
81 3 0.01
82 2 0.01
83 51 0.16
84 8 0.03
86 5 0.02
87 1 0.00
89 1 0.00
90 5 0.02
91 3 0.01
92 15 0.05
93 185 0.58
94 40 0.13
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (94 bp):
CACACCTCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACAC
TCTTTTAATTTACCTATTTGATAATTGAG
Found at i:7503292 original size:83 final size:83
Alignment explanation
Indices: 7503198--7503357 Score: 202
Period size: 83 Copynumber: 1.9 Consensus size: 83
7503188 ACACTCTTTA
* *
7503198 TTTAACCTAAATGGCCAAA-AACT-CAAATTTTTCATTACA-TTATTTTAATTTACCTATTTGAT
1 TTTAACATAAATGGCCAAATAA-TACAAATTTTT-ATCA-AGTTATTTTAATTTACCTATTTGAT
7503260 AAAT-GAGCACACTCCCATTTG
63 AAATGGA-CACACTCCCATTTG
* * * *
7503281 TTTAACATAAATGGTCAAATAATAGAAATTTTTATCAAGTTCTTTTAATTTACCTATTTGATAAT
1 TTTAACATAAATGGCCAAATAATACAAATTTTTATCAAGTTATTTTAATTTACCTATTTGATAAA
7503346 TGGACACACTCC
66 TGGACACACTCC
7503358 TCCCTTACAC
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
82 1 0.01
83 54 0.81
84 12 0.18
ACGTcount: A:0.36, C:0.17, G:0.08, T:0.39
Consensus pattern (83 bp):
TTTAACATAAATGGCCAAATAATACAAATTTTTATCAAGTTATTTTAATTTACCTATTTGATAAA
TGGACACACTCCCATTTG
Found at i:7504306 original size:23 final size:23
Alignment explanation
Indices: 7504280--7504408 Score: 143
Period size: 23 Copynumber: 5.5 Consensus size: 23
7504270 AATGCTGGGC
7504280 AACAGAGAGCACACAAAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
* * *
7504303 AACAGAGAGTACACAAAGTACTG
1 AACAGAGAGCACACAAAGTGCTA
* *
7504326 ATCAGAGAGCACACACAGTGCTAA
1 AACAGAGAGCACACAAAGTGCT-A
*
7504350 TAACAGAGAGCACGAC-ACGTGCTA
1 -AACAGAGAGCAC-ACAAAGTGCTA
* *
7504374 AACAGAGAACACACACAGTGCTA
1 AACAGAGAGCACACAAAGTGCTA
*
7504397 ATCAGAGAGCAC
1 AACAGAGAGCAC
7504409 GCTAGTGTTC
Statistics
Matches: 86, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
22 2 0.02
23 65 0.76
24 1 0.01
25 16 0.19
26 2 0.02
ACGTcount: A:0.44, C:0.23, G:0.22, T:0.11
Consensus pattern (23 bp):
AACAGAGAGCACACAAAGTGCTA
Found at i:7504355 original size:71 final size:71
Alignment explanation
Indices: 7504232--7504408 Score: 191
Period size: 71 Copynumber: 2.5 Consensus size: 71
7504222 TAAACGGAAC
* * **
7504232 AAACAGAGAGTAC-CGAAGTACTGAAT-AGAGAGCACATAAATGCTGGGCAACAGAGAGCAC-AC
1 AAACAGAGAGTACACAAAGTACTG-ATCAGAGAGCACACAAATGCTGAACAACAGAGAGCACGAC
7504294 AAAGTGCT
65 -AAGTGCT
* *
7504302 AAACAGAGAGTACACAAAGTACTGATCAGAGAGCACACACAGTGCT-AATAACAGAGAGCACGAC
1 AAACAGAGAGTACACAAAGTACTGATCAGAGAGCACACA-AATGCTGAACAACAGAGAGCACGAC
*
7504366 ACGTGCT
65 AAGTGCT
** * * *
7504373 AAACAGAGAACACACACAGTGCTAATCAGAGAGCAC
1 AAACAGAGAGTACACAAAGTACTGATCAGAGAGCAC
7504409 GCTAGTGTTC
Statistics
Matches: 91, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
70 15 0.16
71 69 0.76
72 7 0.08
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.12
Consensus pattern (71 bp):
AAACAGAGAGTACACAAAGTACTGATCAGAGAGCACACAAATGCTGAACAACAGAGAGCACGACA
AGTGCT
Found at i:7504406 original size:46 final size:47
Alignment explanation
Indices: 7504280--7504409 Score: 156
Period size: 48 Copynumber: 2.8 Consensus size: 47
7504270 AATGCTGGGC
* * * *
7504280 AACAGAGAGCACACAAAGTGCTAAACAGAGAGTAC-ACAAAGTACTG
1 AACAGAGAGCACACACAGTGCTAATCAGAGAGCACGACAAAGTACTA
* * *
7504326 ATCAGAGAGCACACACAGTGCTAATAACAGAGAGCACGAC-ACGTGCTA
1 AACAGAGAGCACACACAGTGCTAAT--CAGAGAGCACGACAAAGTACTA
*
7504374 AACAGAGAACACACACAGTGCTAATCAGAGAGCACG
1 AACAGAGAGCACACACAGTGCTAATCAGAGAGCACG
7504410 CTAGTGTTCC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 33 0.46
48 37 0.51
49 2 0.03
ACGTcount: A:0.44, C:0.23, G:0.22, T:0.11
Consensus pattern (47 bp):
AACAGAGAGCACACACAGTGCTAATCAGAGAGCACGACAAAGTACTA
Found at i:7506376 original size:60 final size:60
Alignment explanation
Indices: 7506309--7506422 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 60
7506299 CATTGCACTC
7506309 TTTTAATTTACCTATTTGATAATTGAGCAAACCTCCTTC-CTTACACCCTTTGTTACTCTT
1 TTTTAATTTACCTATTTGATAATTGAGCAAACC-CCTTCTCTTACACCCTTTGTTACTCTT
* * *
7506369 TTTTAATTTACCTATTTGATAATTGAGCACACCCTTTCTCTTACACTCTTTGTT
1 TTTTAATTTACCTATTTGATAATTGAGCAAACCCCTTCTCTTACACCCTTTGTT
7506423 TAACATAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
59 4 0.08
60 46 0.92
ACGTcount: A:0.23, C:0.24, G:0.07, T:0.46
Consensus pattern (60 bp):
TTTTAATTTACCTATTTGATAATTGAGCAAACCCCTTCTCTTACACCCTTTGTTACTCTT
Found at i:7506563 original size:92 final size:93
Alignment explanation
Indices: 7506369--7506608 Score: 360
Period size: 92 Copynumber: 2.6 Consensus size: 93
7506359 TGTTACTCTT
* *
7506369 TTTTAATTTACCTATTTGATAATTGAGCACACCCTTTCTCTTACACTCTTTGTTTAACATAAATG
1 TTTTAATTTACCTATTTGATAATTGAGCACACCC-CTCCCTTACACTCTTTGTTTAACATAAATG
7506434 GCCAAAAAACCGAATTTTTCATCACACTC
65 GCCAAAAAACCGAATTTTTCATCACACTC
* *
7506463 TTTTAATTTATCTATTTGATAATTG-G-ACACCCCTCCCTTACACTCTTTGTTTAATATAAATGG
1 TTTTAATTTACCTATTTGATAATTGAGCACACCCCTCCCTTACACTCTTTGTTTAACATAAATGG
* *
7506526 CTAAAAAA-CTAATTTTTTTCATCACACTC
66 CCAAAAAACCGAA--TTTTTCATCACACTC
*
7506555 TTTTAATTTACCTATTTGATAATTGAGCGCACCCCCTCCCTTACACTCTTTGTT
1 TTTTAATTTACCTATTTGATAATTGAGCACA-CCCCTCCCTTACACTCTTTGTT
7506609 ACTCTCTTCT
Statistics
Matches: 133, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
90 3 0.02
91 35 0.26
92 45 0.34
93 2 0.02
94 26 0.20
95 22 0.17
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.41
Consensus pattern (93 bp):
TTTTAATTTACCTATTTGATAATTGAGCACACCCCTCCCTTACACTCTTTGTTTAACATAAATGG
CCAAAAAACCGAATTTTTCATCACACTC
Found at i:7506648 original size:60 final size:60
Alignment explanation
Indices: 7506552--7506665 Score: 176
Period size: 60 Copynumber: 1.9 Consensus size: 60
7506542 TTTCATCACA
* *
7506552 CTCTTTTAATTTACCTATTTGATAATTGAGCGCACCCCCTCCCTTACACTCTTTGTTACT
1 CTCTTCTAATTTACCTATTTGATAATTGAGCACACCCCCTCCCTTACACTCTTTGTTACT
* *
7506612 CTCTTCTAATTTACCTATTTGATAATT-ATGCACACCCCCTTCTTTACACTCTTT
1 CTCTTCTAATTTACCTATTTGATAATTGA-GCACACCCCCTCCCTTACACTCTTT
7506666 ATTTAACATA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 1 0.02
60 48 0.98
ACGTcount: A:0.21, C:0.30, G:0.06, T:0.43
Consensus pattern (60 bp):
CTCTTCTAATTTACCTATTTGATAATTGAGCACACCCCCTCCCTTACACTCTTTGTTACT
Found at i:7506700 original size:246 final size:248
Alignment explanation
Indices: 7506250--7506853 Score: 832
Period size: 246 Copynumber: 2.5 Consensus size: 248
7506240 ACACGGGGTT
* * ** **
7506250 CTCCTTTACACTCTTTGTTTAACATAAATGGC-AAAAAAATCAAAATTTTCATTGCACTCTTTTA
1 CTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACT-AATTTTTTCATCACACTCTTTTA
** * * * * *
7506314 ATTTACCTATTTGATAATTGAGCAAACCTCCTTCCTTACACCCTTTGTTACTCTTTTTTAATTTA
65 ATTTACCTATTTGATAATTGAGCGCACCCCCTACCTTACACTCTTTGTTACTCTCTTCTAATTTA
* * * *
7506379 CCTATTTGATAATTGAGCACACCCTTTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAAC
130 CCTATTTGATAATTGAGCACACCCCTTCTCTTACACTCTTTATTTAACATAAATGACAAAAAAAC
* *
7506444 CGAATTTTTCATCACACTCTTTTAATTTATCTATTTGATAATTG-G-ACA-CCC
195 CGAATTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGTAAACCCC
*
7506495 CTCCCTTACACTCTTTGTTTAATATAAATGGCTAAAAAACTAATTTTTTTCATCACACTCTTTTA
1 CTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACTAA-TTTTTTCATCACACTCTTTTA
*
7506560 ATTTACCTATTTGATAATTGAGCGCACCCCCTCCCTTACACTCTTTGTTACTCTCTTCTAATTTA
65 ATTTACCTATTTGATAATTGAGCGCACCCCCTACCTTACACTCTTTGTTACTCTCTTCTAATTTA
*
7506625 CCTATTTGATAATT-ATGCACACCCCCTTCT-TTACACTCTTTATTTAACATAAATGATAAAAAA
130 CCTATTTGATAATTGA-GCACA-CCCCTTCTCTTACACTCTTTATTTAACATAAATGACAAAAAA
* * *
7506688 ATCGATTTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGTAAACCCC
193 ACCGAATTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGTAAACCCC
** *
7506744 CTCCCTTATGCTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTT-ATCACACTCTTTTA
1 CTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAA-CTAATTTTTTCATCACACTCTTTTA
*
7506808 ATTTAACTATTTGATAATTGA--GCA-CCCCTACCTTACACTCTTTGTT
65 ATTTACCTATTTGATAATTGAGCGCACCCCCTACCTTACACTCTTTGTT
7506854 TAACATAAAT
Statistics
Matches: 321, Mismatches: 30, Indels: 16
0.87 0.08 0.04
Matches are distributed among these distances:
245 54 0.17
246 175 0.55
247 8 0.02
248 36 0.11
249 45 0.14
250 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (248 bp):
CTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACTAATTTTTTCATCACACTCTTTTAA
TTTACCTATTTGATAATTGAGCGCACCCCCTACCTTACACTCTTTGTTACTCTCTTCTAATTTAC
CTATTTGATAATTGAGCACACCCCTTCTCTTACACTCTTTATTTAACATAAATGACAAAAAAACC
GAATTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGTAAACCCC
Found at i:7506716 original size:94 final size:93
Alignment explanation
Indices: 7506612--7507759 Score: 1272
Period size: 94 Copynumber: 12.4 Consensus size: 93
7506602 CTTTGTTACT
* * *
7506612 CTCTTCTAATTTACCTATTTGATAATT-ATGCACACCCCCTTCTTTACACTCTTTATTTAACATA
1 CTCTTTTAATTTACCTATTTGATAATTGA-G-ACACCCCCTTCCTTACACTCTTTGTTTAACATA
* * * *
7506676 AATGATAAAAAAATCGATTTTTTCATTACA
64 AATGCTCAAAAAATCGAATTTTTCATCACA
* * **
7506706 CTCTTTTAATTTACCTATTTGATAATTGAGTAAACCCCCTCCCTTATGCTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCCCTTCCTTACACTCTTTGTTTAACATAA
* * *
7506771 ATGGCT-AAAAAACCAAATTTTTTATCACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
* *
7506800 CTCTTTTAATTTAACTATTTGATAATTGAG-CA-CCCCTACCTTACACTCTTTGTTTAACATAAA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTCCTTACACTCTTTGTTTAACATAAA
*
7506863 TTGC-C-AAAAATCGAATTTTTCATTACA
66 -TGCTCAAAAAATCGAATTTTTCATCACA
* * * * *
7506890 TTCTTTTAATTTACATATTTGATAATTGAGAAAACCCCCTCCCTTACGCTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCCCTTCCTTACACTCTTTGTTTAACATAA
*
7506955 ATGGCT-AAAAAATCAAATTTTTCATCACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
* * *
7506984 CTCTTTTAATTTATCTATTTGATAATTGAG-CA-CCTCTACCTTACACTCTTTGTTTAACATAAA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTCCTTACACTCTTTGTTTAACATAAA
7507047 TGGC-C-AAAAATCGAATTTTTCATCACA
66 T-GCTCAAAAAATCGAATTTTTCATCACA
* * * *
7507074 CTCTTTTAATTTACATATTTGATAATTGAGCAAACCCCCTCCCTTACGCTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCCCTTCCTTACACTCTTTGTTTAACATAA
*
7507139 ATGGCT-AAAAAACCGAATTTTTCATCACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
***
7507168 CTCTTTTAATTTTTTTATTTGATAATTGAG-CACCCCC-TCTCTTACACTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTC-CTTACACTCTTTGTTTAACATAA
* *
7507231 ATGGC-CAAAAAATCAAATTTTTCATTACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
***
7507260 CTCTTTTAATTTTTTTATTTGATAATTGAG-CACCCCC-TCTCTTACACTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTC-CTTACACTCTTTGTTTAACATAA
7507323 ATGGC-CAAAAAATCGAATTTTTCATCACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
* * * *
7507352 CTCTTTTAATTTACATATTTGATAATTGAGCAAACCCCCTCCCTTACGCTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCCCTTCCTTACACTCTTTGTTTAACATAA
*
7507417 ATGGCT-AAAAAACCGAATTTTTCATCACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
*** *
7507446 CTCTTTTAATTTTTTTATTTGATAATTGAG-CACCCCC-TCTTTTACACTCTTTGTTTAACATAA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTC-CTTACACTCTTTGTTTAACATAA
* *
7507509 ATGGC-CAAAAAATCAAATTTTTCATTACA
65 AT-GCTCAAAAAATCGAATTTTTCATCACA
*
7507538 CTATTTTAATTTACCTATTTGATAATTGAGCACACCCCC-TCTCTTACACTCTTTGTTTAACATA
1 CTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCCCTTC-CTTACACTCTTTGTTTAACATA
** *
7507602 AATGGC-CAAAAAATTAAAATTTTCATCACA
64 AAT-GCTCAAAAAATCGAATTTTTCATCACA
* * * * *
7507632 TTTTTTTAATTTACCTATTTGATAATTGAG-CGCACCCCTTCCCTTACATTTTTTGTTTAACATA
1 CTCTTTTAATTTACCTATTTGATAATTGAGACAC-CCCCTT-CCTTACACTCTTTGTTTAACATA
* * *
7507696 AATGGTC--AAAACCAAATTTTTCATCACA
64 AATGCTCAAAAAATCGAATTTTTCATCACA
* * * *
7507724 TTTTTTGTTTAATTTATCTATTTAATAATTGA-ACAC
1 --CTCT-TTTAATTTACCTATTTGATAATTGAGACAC
7507760 ATTATCTCTC
Statistics
Matches: 926, Mismatches: 94, Indels: 67
0.85 0.09 0.06
Matches are distributed among these distances:
90 94 0.10
91 64 0.07
92 274 0.30
93 68 0.07
94 396 0.43
95 30 0.03
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (93 bp):
CTCTTTTAATTTACCTATTTGATAATTGAGACACCCCCTTCCTTACACTCTTTGTTTAACATAAA
TGCTCAAAAAATCGAATTTTTCATCACA
Found at i:7506743 original size:154 final size:152
Alignment explanation
Indices: 7506460--7506762 Score: 412
Period size: 154 Copynumber: 2.0 Consensus size: 152
7506450 TTTCATCACA
* * * * *
7506460 CTCTTTTAATTTATCTATTTGATAATTGGACACCCCTCCCTTACACTCTTTGTTTAATATAAATG
1 CTCTTCTAATTTACCTATTTGATAATTGCACACCCCTCCCTTACACTCTTTATTTAACATAAATG
* * **
7506525 GCTAAAAAACTAATTTTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGCGCACCCC
66 GATAAAAAAATAATTTTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGCAAACCCC
7506590 CTCCCTTACACTCTTTGTTACT
131 CTCCCTTACACTCTTTGTTACT
* *
7506612 CTCTTCTAATTTACCTATTTGATAATTATGCACACCCCCTTCTTTACACTCTTTATTTAACATAA
1 CTCTTCTAATTTACCTATTTGATAA-T-TGCACA-CCCCTCCCTTACACTCTTTATTTAACATAA
* * *
7506677 AT-GATAAAAAAATCGA-TTTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGTAAA
63 ATGGATAAAAAAAT-AATTTTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGCAAA
**
7506740 CCCCCTCCCTTATGCTCTTTGTT
127 CCCCCTCCCTTACACTCTTTGTT
7506763 TAACATAAAT
Statistics
Matches: 131, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
152 23 0.18
153 1 0.01
154 78 0.60
155 29 0.22
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (152 bp):
CTCTTCTAATTTACCTATTTGATAATTGCACACCCCTCCCTTACACTCTTTATTTAACATAAATG
GATAAAAAAATAATTTTTTTCATCACACTCTTTTAATTTACCTATTTGATAATTGAGCAAACCCC
CTCCCTTACACTCTTTGTTACT
Found at i:7506931 original size:184 final size:183
Alignment explanation
Indices: 7506612--7507755 Score: 1440
Period size: 184 Copynumber: 6.2 Consensus size: 183
7506602 CTTTGTTACT
* * * *
7506612 CTCTTCTAATTTACCTATTTGATAATT-ATGCACACCCCCTTCTTTACACTCTTTATTTAACATA
1 CTCTTTTAATTTATCTATTTGATAATTGA-G--CACCCCC-TCCTTACACTCTTTGTTTAACATA
*** * * *
7506676 AATGATAAAAAAATCGATTTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGTAAAC
62 AATG-GCCAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAG-AAAC
** *
7506741 CCCCTCCCTTATGCTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTTATCACA
125 CCCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
*
7506800 CTCTTTTAATTTAACTATTTGATAATTGAGCA-CCCCTACCTTACACTCTTTGTTTAACATAAAT
1 CTCTTTTAATTTATCTATTTGATAATTGAGCACCCCCT-CCTTACACTCTTTGTTTAACATAAAT
* * *
7506864 TGCCAAAAATCGAATTTTTCATTACATTCTTTTAATTTACATATTTGATAATTGAGAAAACCCCC
65 GGCCAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAG-AAACCCCC
* *
7506929 TCCCTTACGCTCTTTGTTTAACATAAATGGCTAAAAAATCAAATTTTTCATCACA
129 TCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
*
7506984 CTCTTTTAATTTATCTATTTGATAATTGAGCA-CCTCTACCTTACACTCTTTGTTTAACATAAAT
1 CTCTTTTAATTTATCTATTTGATAATTGAGCACCCCCT-CCTTACACTCTTTGTTTAACATAAAT
7507048 GGCCAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAGCAAACCCCC
65 GGCCAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAG-AAACCCCC
* *
7507113 TCCCTTACGCTCTTTGTTTAACATAAATGGCTAAAAAACCGAATTTTTCATCACA
129 TCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
* *
7507168 CTCTTTTAATTTTTTTATTTGATAATTGAGCACCCCCTCTCTTACACTCTTTGTTTAACATAAAT
1 CTCTTTTAATTTATCTATTTGATAATTGAGCACCCCCTC-CTTACACTCTTTGTTTAACATAAAT
* * *** *
7507233 GGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTTTTTATTTGATAATTGAG-CACCCCC
65 GGCC-AAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAGAAACCCCC
* * * *
7507297 TCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCGAATTTTTCATCACA
129 TCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
*
7507352 CTCTTTTAATTTA-CATATTTGATAATTGAGCAAACCCCCTCCCTTACGCTCTTTGTTTAACATA
1 CTCTTTTAATTTATC-TATTTGATAATTGAGC--ACCCCCT-CCTTACACTCTTTGTTTAACATA
* * *** *
7507416 AATGGCTAAAAAACCGAATTTTTCATCACACTCTTTTAATTTTTTTATTTGATAATTGAG-CACC
62 AATGGC-CAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAGAAACC
** * * *
7507480 CCCTCTTTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATTACA
126 CCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
* *
7507538 CTATTTTAATTTACCTATTTGATAATTGAGCACACCCCCTCTCTTACACTCTTTGTTTAACATAA
1 CTCTTTTAATTTATCTATTTGATAATTGAG--CACCCCCTC-CTTACACTCTTTGTTTAACATAA
** * * * * **
7507603 ATGGCCAAAAAATTAAAATTTTCATCACATTTTTTTAATTTACCTATTTGATAATTGAGCGCACC
63 ATGGCC-AAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAG-AAACC
* * * *
7507668 CCTTCCCTTACATTTTTTGTTTAACATAAATGG-T-CAAAACCAAATTTTTCATCACA
126 CCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
* * *
7507724 TTTTTTGTTTAATTTATCTATTTAATAATTGA
1 --CTCT-TTTAATTTATCTATTTGATAATTGA
7507756 ACACATTATC
Statistics
Matches: 865, Mismatches: 71, Indels: 39
0.89 0.07 0.04
Matches are distributed among these distances:
184 402 0.46
185 62 0.07
186 314 0.36
187 2 0.00
188 61 0.07
189 24 0.03
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (183 bp):
CTCTTTTAATTTATCTATTTGATAATTGAGCACCCCCTCCTTACACTCTTTGTTTAACATAAATG
GCCAAAAATCGAATTTTTCATCACACTCTTTTAATTTACATATTTGATAATTGAGAAACCCCCTC
CCTTACACTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTCATCACA
Found at i:7507158 original size:278 final size:279
Alignment explanation
Indices: 7506612--7507723 Score: 1539
Period size: 278 Copynumber: 4.0 Consensus size: 279
7506602 CTTTGTTACT
* * * * *
7506612 CTCTTCTAATTTACCTATTTGATAATT-ATGCACACCCCCTTCTTTACACTCTTTATTTAACATA
1 CTCTTTTAATTTACTTATTTGATAATTGA-G--CACCCCCTCCCTTACACTCTTTGTTTAACATA
*** * * *
7506676 AATGATAAAAAAATCGATTTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGTAAAC
63 AATGGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAG-ACAC
* ** * * *
7506741 CCCCTCCCTTATGCTCTTTGTTTAACATAAATGGCTAAAAAACCAAATTTTTTATCACACTCTTT
127 CCCCTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACACTCTTT
* *
7506806 TAATTTA-ACTATTTGATAATTGAGC--A-CCCCTACCTTACACTCTTTGTTTAACATAAATTGC
192 TAATTTACA-TATTTGATAATTGAGCAAACCCCCTCCCTTACACTCTTTGTTTAACATAAATGGC
* * *
7506867 -CAAAAATCGAATTTTTCATTACA
256 TAAAAAACCGAATTTTTCATCACA
* * * *
7506890 TTCTTTTAATTTACATATTTGATAATTGAGAAAACCCCCTCCCTTACGCTCTTTGTTTAACATAA
1 CTCTTTTAATTTACTTATTTGATAATTGAG--CACCCCCTCCCTTACACTCTTTGTTTAACATAA
* * *
7506955 ATGGCTAAAAAATCAAATTTTTCATCACACTCTTTTAATTTATCTATTTGATAATTGAG-CA-CC
64 ATGGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGACACCC
* *
7507018 TCTAC-CTTACACTCTTTGTTTAACATAAATGGCC-AAAAATCGAATTTTTCATCACACTCTTTT
129 CCT-CTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACACTCTTTT
*
7507081 AATTTACATATTTGATAATTGAGCAAACCCCCTCCCTTACGCTCTTTGTTTAACATAAATGGCTA
193 AATTTACATATTTGATAATTGAGCAAACCCCCTCCCTTACACTCTTTGTTTAACATAAATGGCTA
7507146 AAAAACCGAATTTTTCATCACA
258 AAAAACCGAATTTTTCATCACA
** *
7507168 CTCTTTTAATTTTTTTATTTGATAATTGAGCACCCCCTCTCTTACACTCTTTGTTTAACATAAAT
1 CTCTTTTAATTTACTTATTTGATAATTGAGCACCCCCTCCCTTACACTCTTTGTTTAACATAAAT
***
7507233 GGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTTTTTATTTGATAATTGAG-CACCCCC
66 GGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGACACCCCC
*
7507297 TCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCGAATTTTTCATCACACTCTTTTAAT
131 TCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACACTCTTTTAAT
*
7507362 TTACATATTTGATAATTGAGCAAACCCCCTCCCTTACGCTCTTTGTTTAACATAAATGGCTAAAA
196 TTACATATTTGATAATTGAGCAAACCCCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAA
7507427 AACCGAATTTTTCATCACA
261 AACCGAATTTTTCATCACA
** **
7507446 CTCTTTTAATTTTTTTATTTGATAATTGAGCACCCCCTCTTTTACACTCTTTGTTTAACATAAAT
1 CTCTTTTAATTTACTTATTTGATAATTGAGCACCCCCTCCCTTACACTCTTTGTTTAACATAAAT
*
7507511 GGCCAAAAAATCAAATTTTTCATTACACTATTTTAATTTACCTATTTGATAATTGAGCACACCCC
66 GGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAG-ACACCCC
* * * *
7507576 CTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATTAAAATTTTCATCACATTTTTTTAA
130 CTCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACACTCTTTTAA
* ** * * * *
7507641 TTTACCTATTTGATAATTGAGCGCACCCCTTCCCTTACATTTTTTGTTTAACATAAATGG-T-CA
195 TTTACATATTTGATAATTGAGCAAACCCCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAA
*
7507704 AAACCAAATTTTTCATCACA
260 AAACCGAATTTTTCATCACA
7507724 TTTTTTGTTT
Statistics
Matches: 761, Mismatches: 61, Indels: 24
0.90 0.07 0.03
Matches are distributed among these distances:
274 48 0.06
275 31 0.04
276 91 0.12
277 65 0.09
278 405 0.53
279 2 0.00
280 119 0.16
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.40
Consensus pattern (279 bp):
CTCTTTTAATTTACTTATTTGATAATTGAGCACCCCCTCCCTTACACTCTTTGTTTAACATAAAT
GGCCAAAAAATCAAATTTTTCATTACACTCTTTTAATTTACCTATTTGATAATTGAGACACCCCC
TCTCTTACACTCTTTGTTTAACATAAATGGCCAAAAAATCAAATTTTTCATCACACTCTTTTAAT
TTACATATTTGATAATTGAGCAAACCCCCTCCCTTACACTCTTTGTTTAACATAAATGGCTAAAA
AACCGAATTTTTCATCACA
Found at i:7508493 original size:21 final size:22
Alignment explanation
Indices: 7508448--7508505 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 22
7508438 ACACAAAGAA
*
7508448 AGAAAGAAG-AGAAGAAACGGC
1 AGAAAGAAGAAAAAGAAACGGC
7508469 AGAAAGAAGAAAAAGGAAA-GG-
1 AGAAAGAAGAAAAA-GAAACGGC
7508490 AGAAAGGAAGGAAAAA
1 AGAAA-GAA-GAAAAA
7508506 AAAAAGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 14 0.44
22 8 0.25
23 10 0.31
ACGTcount: A:0.64, C:0.03, G:0.33, T:0.00
Consensus pattern (22 bp):
AGAAAGAAGAAAAAGAAACGGC
Found at i:7508511 original size:23 final size:21
Alignment explanation
Indices: 7508469--7508512 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
7508459 AAGAAACGGC
**
7508469 AGAAAGAAGAAAAAGGAAAGG
1 AGAAAGAAGAAAAAAAAAAGG
7508490 AGAAAGGAAGGAAAAAAAAAAGG
1 AGAAA-GAA-GAAAAAAAAAAGG
7508513 TAAGTTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (21 bp):
AGAAAGAAGAAAAAAAAAAGG
Found at i:7509187 original size:21 final size:19
Alignment explanation
Indices: 7509097--7509244 Score: 81
Period size: 21 Copynumber: 7.4 Consensus size: 19
7509087 AAATATCTTG
*
7509097 AATAATATAAAATAATATA
1 AATAATATAAAATAATATT
*
7509116 AATAATATATTAATAATATT
1 AATAATATA-AAATAATATT
* *
7509136 AAAAAT-TAAAATATAATTTT
1 AATAATAT-AAA-ATAATATT
7509156 AAAAGTAATATAAAATATTATATT
1 --AA-TAATATAAAATA--ATATT
*
7509180 AATAATATTAAAAGCAATATT
1 AATAATA-TAAAA-TAATATT
* * *
7509201 AGTAATAT----TAAAAGT
1 AATAATATAAAATAATATT
7509216 AATAATATAAAATATTATATT
1 AATAATATAAAATA--ATATT
7509237 AATAATAT
1 AATAATAT
7509245 TAAGAGTAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 32
0.67 0.10 0.22
Matches are distributed among these distances:
15 11 0.11
19 13 0.13
20 22 0.23
21 27 0.28
22 12 0.12
23 7 0.07
24 5 0.05
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (19 bp):
AATAATATAAAATAATATT
Found at i:7509216 original size:12 final size:12
Alignment explanation
Indices: 7509149--7509219 Score: 50
Period size: 12 Copynumber: 6.4 Consensus size: 12
7509139 AATTAAAATA
*
7509149 TAATTTTAAAAG
1 TAATATTAAAAG
7509161 TAATA-TAAAA-
1 TAATATTAAAAG
7509171 TATTATATT--AA-
1 TA--ATATTAAAAG
7509182 TAATATTAAAAG
1 TAATATTAAAAG
*
7509194 CAATATT---AG
1 TAATATTAAAAG
7509203 TAATATTAAAAG
1 TAATATTAAAAG
7509215 TAATA
1 TAATA
7509220 ATATAAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 18
0.69 0.04 0.26
Matches are distributed among these distances:
9 13 0.28
10 2 0.04
11 11 0.23
12 20 0.43
13 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.06, T:0.38
Consensus pattern (12 bp):
TAATATTAAAAG
Found at i:7509269 original size:57 final size:56
Alignment explanation
Indices: 7509107--7509278 Score: 182
Period size: 57 Copynumber: 3.1 Consensus size: 56
7509097 AATAATATAA
* *
7509107 AATAATAT-AAATAATATATTAATAATATTAAAAATTAA-AATATAA-T-TTTAAAAG
1 AATAATATAAAATATTATATTAATAATATT-AAAAGTAATAA-ATAAGTATTTAAAAG
* *
7509161 --TAATATAAAATATTATATTAATAATATTAAAAGCAAT--ATTAGTAATATTAAAAG
1 AATAATATAAAATATTATATTAATAATATTAAAAGTAATAAATAAGT-AT-TTAAAAG
*
7509215 TAATAATATAAAATATTATATTAATAATATTAAGAGTAATAAATAAGTATTTAAAA-
1 -AATAATATAAAATATTATATTAATAATATTAAAAGTAATAAATAAGTATTTAAAAG
*
7509271 ATTAATAT
1 AATAATAT
7509279 TTTACTAATT
Statistics
Matches: 99, Mismatches: 8, Indels: 21
0.77 0.06 0.16
Matches are distributed among these distances:
50 3 0.03
51 1 0.01
52 12 0.12
53 21 0.21
54 7 0.07
55 7 0.07
57 41 0.41
58 2 0.02
59 5 0.05
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.38
Consensus pattern (56 bp):
AATAATATAAAATATTATATTAATAATATTAAAAGTAATAAATAAGTATTTAAAAG
Found at i:7511226 original size:27 final size:27
Alignment explanation
Indices: 7511186--7511239 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
7511176 AGTCGTATCA
*
7511186 TCCAGAGTGTTCAGGTGATGGACACGT
1 TCCAGAGTGGTCAGGTGATGGACACGT
* *
7511213 TCCAGGGTGGTCAGGTGATGGATACGT
1 TCCAGAGTGGTCAGGTGATGGACACGT
7511240 ACTCTTCCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.20, C:0.17, G:0.37, T:0.26
Consensus pattern (27 bp):
TCCAGAGTGGTCAGGTGATGGACACGT
Found at i:7520324 original size:30 final size:30
Alignment explanation
Indices: 7520283--7520419 Score: 129
Period size: 30 Copynumber: 4.6 Consensus size: 30
7520273 TACATATAAC
* *
7520283 ATTTAGTATTTAAATTTGATATTTTTTTTA
1 ATTTGGTATTTAAATTTGACATTTTTTTTA
*
7520313 ATTTGGTATTTAAAGTTT----TTTTGATTTA
1 ATTTGGTATTTAAA-TTTGACATTTT-TTTTA
* * *
7520341 ATTTGGTATTCAAACTTAACACTTTTTTTTTA
1 ATTTGGTATTTAAATTTGACA--TTTTTTTTA
*
7520373 ATTTGGTATTTAAATTTGACACTTTTTTTA
1 ATTTGGTATTTAAATTTGACATTTTTTTTA
* *
7520403 AGTTGGTACTTAAATTT
1 ATTTGGTATTTAAATTT
7520420 TTTGGGATCT
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
27 6 0.07
28 17 0.19
30 36 0.41
31 3 0.03
32 22 0.25
33 4 0.05
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.57
Consensus pattern (30 bp):
ATTTGGTATTTAAATTTGACATTTTTTTTA
Found at i:7520378 original size:32 final size:32
Alignment explanation
Indices: 7520337--7520401 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
7520327 GTTTTTTTGA
7520337 TTTAATTTGGTATTCAAACTTAACACTTTTTT
1 TTTAATTTGGTATTCAAACTTAACACTTTTTT
* * *
7520369 TTTAATTTGGTATTTAAATTTGACACTTTTTT
1 TTTAATTTGGTATTCAAACTTAACACTTTTTT
7520401 T
1 T
7520402 AAGTTGGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.26, C:0.09, G:0.08, T:0.57
Consensus pattern (32 bp):
TTTAATTTGGTATTCAAACTTAACACTTTTTT
Found at i:7520447 original size:90 final size:89
Alignment explanation
Indices: 7520283--7520469 Score: 236
Period size: 90 Copynumber: 2.1 Consensus size: 89
7520273 TACATATAAC
* * * * * * *
7520283 ATTTAGTATTTAAATTTGATATTTTTTTTAATTTGGTATTTAAAGTTTTTTTGATTTAATTTGGT
1 ATTTGGTATTTAAATTTGACACTTTTTTTAAGTTGGTACTTAAAGTTTTTTGGATCTAATTTGGT
7520348 ATTCAAACTTAACACTTTTTTT-TTA
66 ATTCAAACTT--CACTTTTTTTCTTA
7520373 ATTTGGTATTTAAATTTGACACTTTTTTTAAGTTGGTACTTAAA-TTTTTTGGGATCTAATTTGG
1 ATTTGGTATTTAAATTTGACACTTTTTTTAAGTTGGTACTTAAAGTTTTTT-GGATCTAATTTGG
* *
7520437 TACTT-GAACTTGACTTTTTTTCTTA
65 TA-TTCAAACTTCACTTTTTTTCTTA
7520462 ATTTGGTA
1 ATTTGGTA
7520470 CCTAATCTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
88 9 0.11
89 17 0.20
90 57 0.67
91 2 0.02
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (89 bp):
ATTTGGTATTTAAATTTGACACTTTTTTTAAGTTGGTACTTAAAGTTTTTTGGATCTAATTTGGT
ATTCAAACTTCACTTTTTTTCTTA
Found at i:7520686 original size:31 final size:30
Alignment explanation
Indices: 7520646--7520748 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 30
7520636 AAAAAAAAGC
*
7520646 TTAGGTACCAAATTAGGAAAAAATGTCAAGT
1 TTAGATACCAAATTAGGAAAAAAT-TCAAGT
*
7520677 TTAGATACCAAATTGAGTCCAAAAAA---AA-T
1 TTAGATACCAAATT-AG--GAAAAAATTCAAGT
* *
7520706 TTAGATACCAAATTAAGAAAAAGTATCAAGT
1 TTAGATACCAAATTAGGAAAAAAT-TCAAGT
*
7520737 TTAGGTACCAAA
1 TTAGATACCAAA
7520749 AAGTAAAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
26 5 0.09
28 1 0.02
29 15 0.26
30 4 0.07
31 25 0.43
32 2 0.03
34 6 0.10
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.25
Consensus pattern (30 bp):
TTAGATACCAAATTAGGAAAAAATTCAAGT
Found at i:7520763 original size:60 final size:59
Alignment explanation
Indices: 7520636--7520762 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 59
7520626 ATTAAATCTT
* * * * * *
7520636 AAAAAAAAGCTTAGGTACCAAATTAGGAAAAAATGTCAAGTTTAGATACCAAATTGAGTC
1 AAAAAAAAACTTAGATACCAAATTAAGAAAAAATATCAAGTTTAGATACCAAA-TAAGTA
* * * *
7520696 CAAAAAAAATTTAGATACCAAATTAAGAAAAAGTATCAAGTTTAGGTACCAAA-AAGTA
1 AAAAAAAAACTTAGATACCAAATTAAGAAAAAATATCAAGTTTAGATACCAAATAAGTA
7520754 AAAAAAAAA
1 AAAAAAAAA
7520763 ACCAAATTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 11 0.20
60 45 0.80
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.21
Consensus pattern (59 bp):
AAAAAAAAACTTAGATACCAAATTAAGAAAAAATATCAAGTTTAGATACCAAATAAGTA
Found at i:7520768 original size:20 final size:20
Alignment explanation
Indices: 7520743--7520782 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
7520733 AAGTTTAGGT
7520743 ACCAAA-AAGTAAAAAAAAAA
1 ACCAAATAAG-AAAAAAAAAA
7520763 ACCAAATTAAGAAAAAAAAA
1 ACCAAA-TAAGAAAAAAAAA
7520783 TGTCAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 9 0.50
22 3 0.17
ACGTcount: A:0.78, C:0.10, G:0.05, T:0.07
Consensus pattern (20 bp):
ACCAAATAAGAAAAAAAAAA
Found at i:7526464 original size:21 final size:22
Alignment explanation
Indices: 7526435--7526476 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7526425 AGAGACAAGT
7526435 TTTGAGTTGCATGAAGTAGGAA
1 TTTGAGTTGCATGAAGTAGGAA
*
7526457 TTTG-GTTGCGTGAAGTAGGA
1 TTTGAGTTGCATGAAGTAGGA
7526477 TTTCACTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.26, C:0.05, G:0.36, T:0.33
Consensus pattern (22 bp):
TTTGAGTTGCATGAAGTAGGAA
Found at i:7528774 original size:42 final size:42
Alignment explanation
Indices: 7528687--7528792 Score: 99
Period size: 42 Copynumber: 2.5 Consensus size: 42
7528677 CATGTCTATG
* * * * *
7528687 TGACCCAAGTTAGTGCCTCATACGGCTTGGCCCACGGTCAGA
1 TGACCCAAGTCAGTGCCTCACACGGCTTGACACACGATCAGA
* *
7528729 TGACCCAAGTCAGTGCCTCACAC-GATCTGACACACGATCATA
1 TGACCCAAGTCAGTGCCTCACACGGCT-TGACACACGATCAGA
* *
7528771 TGACTCAACG-CGGTGCCTCACA
1 TGACCCAA-GTCAGTGCCTCACA
7528793 GTCTACCACA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.04
42 50 0.94
43 1 0.02
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.20
Consensus pattern (42 bp):
TGACCCAAGTCAGTGCCTCACACGGCTTGACACACGATCAGA
Found at i:7532782 original size:21 final size:20
Alignment explanation
Indices: 7532741--7532785 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7532731 GCAGAGAACT
* **
7532741 GAAAAAGAAAACAAATTTGG
1 GAAAAAGAAAAAAAACGTGG
7532761 GAAAAAGAAAAGAAAACGTGG
1 GAAAAAGAAAA-AAAACGTGG
7532782 GAAA
1 GAAA
7532786 GGAATTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.62, C:0.04, G:0.24, T:0.09
Consensus pattern (20 bp):
GAAAAAGAAAAAAAACGTGG
Found at i:7538414 original size:12 final size:12
Alignment explanation
Indices: 7538384--7538417 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7538374 TTTTGGGCTA
7538384 AGGTTGGCTCAT
1 AGGTTGGCTCAT
**
7538396 AACTTGGCTCAT
1 AGGTTGGCTCAT
7538408 AGGTTGGCTC
1 AGGTTGGCTC
7538418 TTGGTTGAGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (12 bp):
AGGTTGGCTCAT
Found at i:7542479 original size:22 final size:22
Alignment explanation
Indices: 7542419--7542481 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
7542409 AGGAAGATCG
**
7542419 AAATTAAATTATAATTTTTACG
1 AAATTAAATTATAATTTTTAAA
* *
7542441 ATATTAAAAATATAATTTTTAAA
1 AAATT-AAATTATAATTTTTAAA
*
7542464 AAATTAAATTAAAATTTT
1 AAATTAAATTATAATTTT
7542482 ATTATTTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATTAAATTATAATTTTTAAA
Found at i:7546022 original size:16 final size:16
Alignment explanation
Indices: 7546003--7546049 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7545993 AACTTTTTAT
*
7546003 ATTTTTTAAATTTTGG
1 ATTTTTTAAATTTTGA
*
7546019 ATTTTTT-ATTTTTGA
1 ATTTTTTAAATTTTGA
7546034 ATATTTTTATAATTTT
1 AT-TTTTTA-AATTTT
7546050 TAAGTTACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 8 0.32
16 12 0.48
18 5 0.20
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
ATTTTTTAAATTTTGA
Found at i:7547381 original size:108 final size:109
Alignment explanation
Indices: 7547258--7547457 Score: 278
Period size: 109 Copynumber: 1.8 Consensus size: 109
7547248 AAATAAAAAC
* * ** * *
7547258 ATTTATCAATTTTAAATAGGATATTCAATTATTTAGGTTC-AAG-GGAAAATCATACCTAACATG
1 ATTTATCAATTTTAAATAGAATACTCAATTATTTAGGTTCAAAGAAAAAAAT-ATACCCAACACG
*
7547321 TTAGGACACAATTTCTCGAGTTCCCTAAGTAACAGAACATTAAGT
65 TTAGGACACAATTTCTCGAATTCCCTAAGTAACAGAACATTAAGT
* * *
7547366 ATTTATCGATTTTAAATATAATACTCGATTATTTAGGTTCAAAGAAAAAAATATACCCAACACGT
1 ATTTATCAATTTTAAATAGAATACTCAATTATTTAGGTTCAAAGAAAAAAATATACCCAACACGT
*
7547431 TAGGACATAATTTCTCGAATTCCCTAA
66 TAGGACACAATTTCTCGAATTCCCTAA
7547458 AATAAAAGAA
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
108 35 0.44
109 39 0.49
110 5 0.06
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (109 bp):
ATTTATCAATTTTAAATAGAATACTCAATTATTTAGGTTCAAAGAAAAAAATATACCCAACACGT
TAGGACACAATTTCTCGAATTCCCTAAGTAACAGAACATTAAGT
Found at i:7547841 original size:27 final size:27
Alignment explanation
Indices: 7547780--7547847 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
7547770 GGTTTACTTT
*
7547780 TTTAAAAAATAAAATAAAATGATTTAA
1 TTTAAAAAATAAAATAAAATGATTCAA
* *
7547807 -TTAGAAAAATATAATAAAATGGTTCAA
1 TTTA-AAAAATAAAATAAAATGATTCAA
*
7547834 TTTAAAAAAGAAAA
1 TTTAAAAAATAAAA
7547848 AAATTAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
26 3 0.09
27 28 0.82
28 3 0.09
ACGTcount: A:0.62, C:0.01, G:0.07, T:0.29
Consensus pattern (27 bp):
TTTAAAAAATAAAATAAAATGATTCAA
Found at i:7549858 original size:46 final size:45
Alignment explanation
Indices: 7549789--7550013 Score: 238
Period size: 46 Copynumber: 4.9 Consensus size: 45
7549779 TGAGATGATA
* *
7549789 GCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAAGTG
1 GCTTCAATCTG-CCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* * * * * *
7549835 GTTTCAATTTGTCCCTCTTGACTTAGAGGTAAATGATTGGATGGTA
1 GCTTCAATCTG-CCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* *
7549881 GCTTCAATCTGCCTCTCTTGACTTAGGGGTAAAAGATTGGATGATG
1 GCTTCAATCTGCC-CTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* * *
7549927 GCTTTAATCTGCCCTTTCTTGACTTAGGGATAAAACATT-GAATGGTG
1 GCTTCAATCTGCCC--TCTTGACTTAGGGGTAAAAGATTGGAA-GGTG
* *
7549974 GCTTCAATTTACCCCTCTTGA-TTAGGGGTAAAAGATTGGA
1 GCTTCAATCT-GCCCTCTTGACTTAGGGGTAAAAGATTGGA
7550014 TGACTTCTTC
Statistics
Matches: 149, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
45 17 0.11
46 97 0.65
47 32 0.21
48 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (45 bp):
GCTTCAATCTGCCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
Found at i:7549999 original size:92 final size:93
Alignment explanation
Indices: 7549787--7550016 Score: 292
Period size: 92 Copynumber: 2.5 Consensus size: 93
7549777 TGTGAGATGA
* *
7549787 TAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGA-AAGTGGTTTCAATTTGTCCCT
1 TAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGAGTGGTTTCAATCTGTCCCT
** *
7549851 CTTGACTTAGAGGTAAATGATTGGATGG
66 CTTGACTTAGAGGTAAAACATTGAATGG
* *
7549879 TAGCTTCAATCTGCCTCTCTTGACTTAGGGGTAAAAGATTGGATGA-TGGCTTT-AATCTG-CCC
1 TAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGAGTGG-TTTCAATCTGTCCC
7549941 TTTCTTGACTTAG-GGATAAAACATTGAATGG
65 --TCTTGACTTAGAGG-TAAAACATTGAATGG
* * *
7549972 TGGCTTCAATTTACCCCTCTTGA-TTAGGGGTAAAAGATTGGATGA
1 TAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGA
7550017 CTTCTTCAAT
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
91 3 0.02
92 73 0.60
93 46 0.38
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (93 bp):
TAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGAGTGGTTTCAATCTGTCCCT
CTTGACTTAGAGGTAAAACATTGAATGG
Found at i:7550052 original size:42 final size:41
Alignment explanation
Indices: 7549999--7550297 Score: 271
Period size: 42 Copynumber: 7.3 Consensus size: 41
7549989 TCTTGATTAG
* * *
7549999 GGGTAAAAGATTGGATGACTTCTTCAATTTGCCCCATGGTTA
1 GGGTAAGAGATTGGATGA-TTCTTCAATCTGCCCCATGGTTC
* *
7550041 GGGTAAGAGATTGAAT-A-TCTTCAATCTGCCCTATGG-TC
1 GGGTAAGAGATTGGATGATTCTTCAATCTGCCCCATGGTTC
* *
7550079 GGGGTAAGAGATTGGATG--GCTTCAATCTGCCCCAT-GATC
1 -GGGTAAGAGATTGGATGATTCTTCAATCTGCCCCATGGTTC
7550118 GGGGTAAGAGATTGGAT-AGTGTCTTCAATCTGCCCCATGG-TC
1 -GGGTAAGAGATTGGATGA-T-TCTTCAATCTGCCCCATGGTTC
* *
7550160 GGCGTAAGAGATTGG-CGATTCTTCAATCTACCCCATGG-TC
1 GG-GTAAGAGATTGGATGATTCTTCAATCTGCCCCATGGTTC
* * * *
7550200 AGGGTAAGAGATTTGATGGTGACTTCAATTTGCCCCATGG-TC
1 -GGGTAAGAGATTGGATGAT-TCTTCAATCTGCCCCATGGTTC
* * *
7550242 GGGATAAGAGATTGGATGGTGTCTTCAATTTTCCCCATGG-TC
1 GGG-TAAGAGATTGGATGAT-TCTTCAATCTGCCCCATGGTTC
7550284 GTGGTAAGAGATTG
1 G-GGTAAGAGATTG
7550298 AATGGGATGA
Statistics
Matches: 222, Mismatches: 20, Indels: 30
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.01
39 66 0.30
40 31 0.14
41 11 0.05
42 109 0.49
43 3 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (41 bp):
GGGTAAGAGATTGGATGATTCTTCAATCTGCCCCATGGTTC
Found at i:7550227 original size:82 final size:80
Alignment explanation
Indices: 7550019--7550296 Score: 298
Period size: 82 Copynumber: 3.4 Consensus size: 80
7550009 TTGGATGACT
* * * *
7550019 TCTTCAATTTGCCCCATGGTTAGGGTAAGAGA-TTGA-AT-ATCTTCAATCTGCCCTATGGTCGG
1 TCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGATGTGA-CTTCAATCTGCCCCATGGTC-G
7550081 GGTAAGAGATT-GGATG
64 GGTAAGAGATTGGGATG
* * * * *
7550097 GCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTCGG
1 TCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGAT-GTGACTTCAATCTGCCCCATGGTCGG
7550162 CGTAAGAGATTGGCGAT-
65 -GTAAGAGATTGG-GATG
* *
7550179 TCTTCAATCTACCCCATGGTCAGGGTAAGAGATTTGATGGTGACTTCAATTTGCCCCATGGTCGG
1 TCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGAT-GTGACTTCAATCTGCCCCATGGTCGG
*
7550244 GATAAGAGATTGGATGGTG
65 G-TAAGAGATTGG--GATG
* *
7550263 TCTTCAATTTTCCCCATGGTC-GTGGTAAGAGATT
1 TCTTCAATCTGCCCCATGGTCAG-GGTAAGAGATT
7550297 GAATGGGATG
Statistics
Matches: 168, Mismatches: 21, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
78 27 0.16
79 3 0.02
80 2 0.01
81 31 0.18
82 69 0.41
83 6 0.04
84 30 0.18
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (80 bp):
TCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGATGTGACTTCAATCTGCCCCATGGTCGGG
TAAGAGATTGGGATG
Found at i:7550257 original size:124 final size:120
Alignment explanation
Indices: 7550006--7550297 Score: 374
Period size: 124 Copynumber: 2.4 Consensus size: 120
7549996 TAGGGGTAAA
* * *
7550006 AGATTGGATGACT-TCTTCAATTTGCCCCATGGTTAGGGTAAGAGATT-GAATATCTTCAATCTG
1 AGATTGGAT-AGTGTCTTCAATTTGCCCCATGG-TCGGGTAAGAGATTGGAATATCTTCAATCTA
* * *
7550069 CCCTATGGTCGGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATCGGGGTAAG
64 CCCCATGGTCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATCGGGATAAG
* *
7550126 AGATTGGATAGTGTCTTCAATCTGCCCCATGGTCGGCGTAAGAGATTGGCGAT-TCTTCAATCTA
1 AGATTGGATAGTGTCTTCAATTTGCCCCATGGTCGG-GTAAGAGATTGG-AATATCTTCAATCTA
* * *
7550190 CCCCATGGTCAGGGTAAGAGATTTGATGGTGACTTCAATTTGCCCCATGGTCGGGATAAG
64 CCCCATGGTCAGGGTAAGAGATTGGAT-G-G-CTTCAATCTGCCCCATGATCGGGATAAG
* *
7550250 AGATTGGATGGTGTCTTCAATTTTCCCCATGGTCGTGGTAAGAGATTG
1 AGATTGGATAGTGTCTTCAATTTGCCCCATGGTCG-GGTAAGAGATTG
7550298 AATGGGATGA
Statistics
Matches: 150, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
119 5 0.03
120 37 0.25
121 35 0.23
122 3 0.02
123 1 0.01
124 68 0.45
125 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (120 bp):
AGATTGGATAGTGTCTTCAATTTGCCCCATGGTCGGGTAAGAGATTGGAATATCTTCAATCTACC
CCATGGTCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATCGGGATAAG
Found at i:7553380 original size:12 final size:12
Alignment explanation
Indices: 7553363--7553392 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7553353 GCAATATAAT
*
7553363 TCTTTTCTTTTC
1 TCTTTTCTTCTC
7553375 TCTTTTCTTCTC
1 TCTTTTCTTCTC
7553387 TCTTTT
1 TCTTTT
7553393 TCTCTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TCTTTTCTTCTC
Found at i:7553403 original size:10 final size:10
Alignment explanation
Indices: 7553370--7553403 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7553360 AATTCTTTTC
7553370 TTTTCTCTTT
1 TTTTCTCTTT
* *
7553380 TCTTCTCTCT
1 TTTTCTCTTT
7553390 TTTTCTCTTT
1 TTTTCTCTTT
7553400 TTTT
1 TTTT
7553404 ATGTGACTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTCTCTTT
Found at i:7557420 original size:37 final size:37
Alignment explanation
Indices: 7557379--7557466 Score: 115
Period size: 37 Copynumber: 2.4 Consensus size: 37
7557369 AGCGACAGTC
7557379 TTGGGTGAAATCTAGAAATAATAATG-TGGCAACAACT
1 TTGGGTGAAATCTAGAAATAATAATGCT-GCAACAACT
* * *
7557416 TTGGGTGTAATCTAGAAGTAATAATGCTGCGACAACT
1 TTGGGTGAAATCTAGAAATAATAATGCTGCAACAACT
* *
7557453 TTGAGTGCAATCTA
1 TTGGGTGAAATCTA
7557467 AACAACTAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
37 44 0.98
38 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (37 bp):
TTGGGTGAAATCTAGAAATAATAATGCTGCAACAACT
Found at i:7557858 original size:15 final size:15
Alignment explanation
Indices: 7557823--7557857 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
7557813 TTCTTTTTCC
7557823 TTTTTTATTTGTCTT
1 TTTTTTATTTGTCTT
*
7557838 TTTTTTCTTT-TCTT
1 TTTTTTATTTGTCTT
7557852 TTTTTT
1 TTTTTT
7557858 TGGGTGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.03, C:0.09, G:0.03, T:0.86
Consensus pattern (15 bp):
TTTTTTATTTGTCTT
Found at i:7558792 original size:20 final size:19
Alignment explanation
Indices: 7558769--7558816 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
7558759 CTTCTTTCCT
7558769 TTTTCTTTTCTTATTTTTTA
1 TTTT-TTTTCTTATTTTTTA
* *
7558789 TTTTTATTTTTTATTTTTTC
1 TTTTT-TTTCTTATTTTTTA
7558809 TTTTTTTT
1 TTTTTTTT
7558817 TTGGGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.08, C:0.06, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTTCTTATTTTTTA
Found at i:7558804 original size:13 final size:13
Alignment explanation
Indices: 7558779--7558818 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7558769 TTTTCTTTTC
7558779 TTATTTTTTATTT
1 TTATTTTTTATTT
7558792 TTATTTTTTATTT
1 TTATTTTTTATTT
7558805 TT-TCTTTTT-TTT
1 TTAT-TTTTTATTT
7558817 TT
1 TT
7558819 GGGTTTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.88
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:7568095 original size:24 final size:24
Alignment explanation
Indices: 7568068--7568119 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7568058 GTCAAATGAA
* *
7568068 CTAACTTATTTAGGCTCGTAAGAG
1 CTAACCTATCTAGGCTCGTAAGAG
* *
7568092 CTAACCTATCTGGGCTCGTATGAG
1 CTAACCTATCTAGGCTCGTAAGAG
7568116 CTAA
1 CTAA
7568120 TTTTCTGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
CTAACCTATCTAGGCTCGTAAGAG
Found at i:7573119 original size:46 final size:46
Alignment explanation
Indices: 7573050--7573274 Score: 301
Period size: 46 Copynumber: 4.9 Consensus size: 46
7573040 TGAGATGGTA
* *
7573050 GCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAAGTG
1 GCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* * * * *
7573096 GTTTCAATTTGTCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTA
1 GCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* *
7573142 GCTTCAATCTGCCTCTCTTGACTTAGGGGTAAAAGATTGGATGGTG
1 GCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
* *
7573188 GCTTTAATCTGCCCCTTCTTGACTTAGGGATAAAAGATT-GAATGGTG
1 GCTTCAATCTGCCCC-TCTTGACTTAGGGGTAAAAGATTGGAA-GGTG
* *
7573235 GCTTCAATTTACCCCTCTTGA-TTAGGGGTAAAAGATTGGA
1 GCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGA
7573275 TGACTTCTTC
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
45 15 0.10
46 104 0.66
47 38 0.24
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (46 bp):
GCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAGGTG
Found at i:7573263 original size:92 final size:92
Alignment explanation
Indices: 7573044--7573276 Score: 335
Period size: 92 Copynumber: 2.5 Consensus size: 92
7573034 CTTCTGTGAG
** * *
7573044 ATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAAGTGGTTTCAATTTGTC
1 ATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGTTTCAATCTGCC
* *
7573109 CCTCTTGACTTAGGGGTAAAAGATTGG
66 CCTCTTGACTTAGGGATAAAAGATTGA
* *
7573136 ATGGTAGCTTCAATCTGCCTCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGCTTT-AATCTGC
1 ATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGG-TTTCAATCTGC
7573200 CCCTTCTTGACTTAGGGATAAAAGATTGA
65 CCC-TCTTGACTTAGGGATAAAAGATTGA
* * *
7573229 ATGGTGGCTTCAATTTACCCCTCTTGA-TTAGGGGTAAAAGATTGGATG
1 ATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATG
7573277 ACTTCTTCAA
Statistics
Matches: 127, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
92 78 0.61
93 49 0.39
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (92 bp):
ATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGGTGGTTTCAATCTGCC
CCTCTTGACTTAGGGATAAAAGATTGA
Found at i:7573291 original size:138 final size:138
Alignment explanation
Indices: 7573043--7573292 Score: 362
Period size: 138 Copynumber: 1.8 Consensus size: 138
7573033 ACTTCTGTGA
* * **
7573043 GATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGGTAAAAGATTGGAAAGTGGTTTCAATTTGT
1 GATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGATAAAAGATTGGAAAGTGGCTTCAATTTAC
*
7573108 CCCTCTTGACTTAGGGGTAAAAGATTGGATGGTAGCTTCAATCTGCCTCTCTTGACTTAGGGGTA
66 CCCTCTTGACTTAGGGGTAAAAGATTGGATGCTAGCTTCAATCTGCCTCTCTTGACTTAGGGGTA
7573173 AAAGATTG
131 AAAGATTG
* * * *
7573181 GATGGTGGCTTTAATCTGCCCCTTCTTGACTTAGGGATAAAAGATT-GAATGGTGGCTTCAATTT
1 GATGGTAGCTTCAATATGCCCC-TCTTGACTTAGGGATAAAAGATTGGAA-AGTGGCTTCAATTT
*
7573245 ACCCCTCTTGA-TTAGGGGTAAAAGATTGGATGACT-TCTTCAATCTGCC
64 ACCCCTCTTGACTTAGGGGTAAAAGATTGGATG-CTAGCTTCAATCTGCC
7573293 CCATGGTTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
138 55 0.56
139 44 0.44
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (138 bp):
GATGGTAGCTTCAATATGCCCCTCTTGACTTAGGGATAAAAGATTGGAAAGTGGCTTCAATTTAC
CCCTCTTGACTTAGGGGTAAAAGATTGGATGCTAGCTTCAATCTGCCTCTCTTGACTTAGGGGTA
AAAGATTG
Found at i:7573416 original size:42 final size:42
Alignment explanation
Indices: 7573259--7573600 Score: 378
Period size: 42 Copynumber: 8.3 Consensus size: 42
7573249 CTCTTGATTA
* * *
7573259 GGGGTAAAAGATTGGATGACT-TCTTCAATCTGCCCCATGGTT
1 GGGGTAAGAGATTGGAT-AGTGTCTTCAATCTGCCCCATGGTC
* *
7573301 AGGGTAAGAGATT-GA-A-TGTCTTCAATCTGCCCTATGGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
* *
7573340 AGGGTAAGAGATTGGAT-G-G-CTTCAATCTGCCCCATGATC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
7573379 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
* ** *
7573421 GGCGTAAGAGATTGGCGA-T-TCTTCAATCTACCCCATGGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
* * * * *
7573461 AGGGTAAGAGATTTGATGGTGACTTCAATTTGCCCCATGGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
* * * * * *
7573503 GGGGTAAGAGATTGGATGGCGTATTCAATTTGCCACATTGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
* * *
7573545 GAGGTAAGAGATTGGATAGTGTCTTCAATTTTCCCCATGGTC
1 GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
*
7573587 GTGGTAAGAGATTG
1 GGGGTAAGAGATTG
7573601 AATGGGATGA
Statistics
Matches: 255, Mismatches: 36, Indels: 18
0.83 0.12 0.06
Matches are distributed among these distances:
38 1 0.00
39 67 0.26
40 36 0.14
41 5 0.02
42 146 0.57
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
GGGGTAAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTC
Found at i:7573488 original size:82 final size:78
Alignment explanation
Indices: 7573260--7573600 Score: 314
Period size: 82 Copynumber: 4.2 Consensus size: 78
7573250 TCTTGATTAG
* *
7573260 GGGTAAAAGATTGGATGACTTCTTCAATCTGCCCCATGGTTAGGGTAAGAGA-TTGAATGT-CTT
1 GGGTAAGAGATTGG--GA-TTCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTG-ATGTGCTT
*
7573323 CAATCTGCCCTATGGTC
62 CAATCTGCCCCATGGTC
* * * *
7573340 AGGGTAAGAGATT-GGATGGCTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGATAGTGTCTT
1 -GGGTAAGAGATTGGGAT-TCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGAT-GTG-CTT
7573404 CAATCTGCCCCATGGTC
62 CAATCTGCCCCATGGTC
*
7573421 GGCGTAAGAGATTGGCGATTCTTCAATCTACCCCATGGTCAGGGTAAGAGATTTGATGGTGACTT
1 GG-GTAAGAGATTGG-GATTCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGAT-GTG-CTT
*
7573486 CAATTTGCCCCATGGTC
62 CAATCTGCCCCATGGTC
* * * * *
7573503 GGGGTAAGAGATT-GGATGGCGTATTCAATTTGCCACATTGTC-GAGGTAAGAGATTGGATAGTG
1 -GGGTAAGAGATTGGGAT----TCTTCAATCTGCCCCATGGTCAG-GGTAAGAGATTTGAT-GTG
* *
7573566 TCTTCAATTTTCCCCATGGTC
59 -CTTCAATCTGCCCCATGGTC
7573587 GTGGTAAGAGATTG
1 G-GGTAAGAGATTG
7573601 AATGGGATGA
Statistics
Matches: 220, Mismatches: 24, Indels: 28
0.81 0.09 0.10
Matches are distributed among these distances:
77 1 0.00
78 32 0.15
79 4 0.02
80 6 0.03
81 41 0.19
82 66 0.30
83 7 0.03
84 63 0.29
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (78 bp):
GGGTAAGAGATTGGGATTCTTCAATCTGCCCCATGGTCAGGGTAAGAGATTTGATGTGCTTCAAT
CTGCCCCATGGTC
Found at i:7573583 original size:166 final size:160
Alignment explanation
Indices: 7573261--7573600 Score: 452
Period size: 166 Copynumber: 2.1 Consensus size: 160
7573251 CTTGATTAGG
* * * *
7573261 GGTAAAAGATTGGATGACTTCTTCAATCTGCCCCATGGTTAGGGTAAGAGATTGAATGTCTTCAA
1 GGTAAGAGATTGG-CGA-TTCTTCAATCTACCCCATGGTCAGGGTAAGAGATTGAATGTCTTCAA
* * *
7573326 TCTGCCCTATGGTCAGGGTAAGAGATTGGATGGCTTCAATCTGCCCCATGATCGGGGTAAGAGAT
64 TCTGCCCCATGGTCAGGGTAAGAGATTGGATGGCTTCAATCTGCCACATGATCGAGGTAAGAGAT
7573391 TGGATAGTGTCTTCAATCTGCCCCATGGTCG-
129 TGGATAGTGTCTTCAATCTGCCCCATGGTCGT
7573422 GCGTAAGAGATTGGCGATTCTTCAATCTACCCCATGGTCAGGGTAAGAGATTTG-ATGGTGACTT
1 G-GTAAGAGATTGGCGATTCTTCAATCTACCCCATGGTCAGGGTAAGAGA-TTGAAT-GT--CTT
* * *
7573486 CAATTTGCCCCATGGTCGGGGTAAGAGATTGGATGGCGTATTCAATTTGCCACATTG-TCGAGGT
61 CAATCTGCCCCATGGTCAGGGTAAGAGATTGGATGGC---TTCAATCTGCCACA-TGATCGAGGT
* *
7573550 AAGAGATTGGATAGTGTCTTCAATTTTCCCCATGGTCGT
122 AAGAGATTGGATAGTGTCTTCAATCTGCCCCATGGTCGT
7573589 GGTAAGAGATTG
1 GGTAAGAGATTG
7573601 AATGGGATGA
Statistics
Matches: 157, Mismatches: 12, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
160 33 0.21
161 8 0.05
162 11 0.07
163 37 0.24
166 65 0.41
167 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (160 bp):
GGTAAGAGATTGGCGATTCTTCAATCTACCCCATGGTCAGGGTAAGAGATTGAATGTCTTCAATC
TGCCCCATGGTCAGGGTAAGAGATTGGATGGCTTCAATCTGCCACATGATCGAGGTAAGAGATTG
GATAGTGTCTTCAATCTGCCCCATGGTCGT
Found at i:7573737 original size:43 final size:43
Alignment explanation
Indices: 7573676--7573761 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
7573666 GTTTTAATTC
*
7573676 GCTTCACTACAACTTTAGGAAGATAGGATTTGATGCTTCATCT
1 GCTTCACTACAACTTTAGGAAGATAGGATTTGAAGCTTCATCT
7573719 GCTTCACTACAACTTTAGGAAGATAGGATTTGAAGCTTCATCT
1 GCTTCACTACAACTTTAGGAAGATAGGATTTGAAGCTTCATCT
7573762 TACTCTACTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (43 bp):
GCTTCACTACAACTTTAGGAAGATAGGATTTGAAGCTTCATCT
Found at i:7576213 original size:37 final size:38
Alignment explanation
Indices: 7576172--7576259 Score: 92
Period size: 37 Copynumber: 2.4 Consensus size: 38
7576162 AGCGACAGTC
* **
7576172 TTGGGTGCATTCTA-GAAATAATACTGCGGTGACAACT
1 TTGGGTGCATTCTAGGAAATAATAATGCGACGACAACT
* *
7576209 TTGGGTG--TTATATGGAAGTAATAATGCGACGACAACT
1 TTGGGTGCATTCTA-GGAAATAATAATGCGACGACAACT
*
7576246 TTGGGTGCAATCTA
1 TTGGGTGCATTCTA
7576260 AACAACTAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
35 4 0.10
37 33 0.82
39 3 0.08
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.31
Consensus pattern (38 bp):
TTGGGTGCATTCTAGGAAATAATAATGCGACGACAACT
Found at i:7576723 original size:12 final size:12
Alignment explanation
Indices: 7576706--7576737 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7576696 GCAATATAAT
*
7576706 TCTTTTCTTTTC
1 TCTTTTCTTCTC
7576718 TCTTTTCTTCTC
1 TCTTTTCTTCTC
7576730 TCTTTTCT
1 TCTTTTCT
7576738 CTTTTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
TCTTTTCTTCTC
Found at i:7584015 original size:23 final size:23
Alignment explanation
Indices: 7583973--7584114 Score: 148
Period size: 23 Copynumber: 6.2 Consensus size: 23
7583963 ACACTAGCGC
* * *
7583973 GCTCTCTATTTAGCATTGTGTGT
1 GCTCTCTGTTCAGCACTGTGTGT
* *
7583996 GCTCTTTGTTCAGTACTGTGTGT
1 GCTCTCTGTTCAGCACTGTGTGT
7584019 GCTCTCTGTTCAGCACTGTGTGT
1 GCTCTCTGTTCAGCACTGTGTGT
* *
7584042 GCTCTCTGTTTAGCA-TGTCTCGT
1 GCTCTCTGTTCAGCACTGTGT-GT
7584065 GCTCTCTGATT-AGCACT-TCGTGT
1 GCTCTCTG-TTCAGCACTGT-GTGT
*
7584088 GCTCTCTGATT-AGCACTTTGTGT
1 GCTCTCTG-TTCAGCACTGTGTGT
7584111 GCTC
1 GCTC
7584115 AGGACTTTGT
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.04
23 95 0.91
24 5 0.05
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (23 bp):
GCTCTCTGTTCAGCACTGTGTGT
Found at i:7584088 original size:69 final size:69
Alignment explanation
Indices: 7583973--7584114 Score: 175
Period size: 69 Copynumber: 2.1 Consensus size: 69
7583963 ACACTAGCGC
* * *
7583973 GCTCTCTATTTAGCATTGTGTGTGCTCTTTGTTCAGTACTGTGTGTGCTCTCTG-TTCAGCACTG
1 GCTCTCTATTTAGCATTGTCTGTGCTCTCTGTTCAGCACTGTGTGTGCTCTCTGATT-AGCACTG
7584037 TGTGT
65 TGTGT
*
7584042 GCTCTCTGTTTAGCA-TGTCTCGTGCTCTCTGATT-AGCACT-TCGTGTGCTCTCTGATTAGCAC
1 GCTCTCTATTTAGCATTGTCT-GTGCTCTCTG-TTCAGCACTGT-GTGTGCTCTCTGATTAGCAC
*
7584104 TTTGTGT
63 TGTGTGT
7584111 GCTC
1 GCTC
7584115 AGGACTTTGT
Statistics
Matches: 64, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
68 5 0.08
69 55 0.86
70 4 0.06
ACGTcount: A:0.11, C:0.23, G:0.23, T:0.43
Consensus pattern (69 bp):
GCTCTCTATTTAGCATTGTCTGTGCTCTCTGTTCAGCACTGTGTGTGCTCTCTGATTAGCACTGT
GTGT
Found at i:7584143 original size:39 final size:39
Alignment explanation
Indices: 7584079--7584153 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
7584069 TCTGATTAGC
*
7584079 ACTTCGTGTGCTCTCTGATTAGCACTTTGTGTGCTCAGG
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGG
* *
7584118 ACTTTGTGTACTCTCTGTTTAGCACTTTGTGTGCTC
1 ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTC
7584154 TCTATTGCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.43
Consensus pattern (39 bp):
ACTTCGTGTACTCTCTGATTAGCACTTTGTGTGCTCAGG
Found at i:7584673 original size:14 final size:14
Alignment explanation
Indices: 7584654--7584691 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
7584644 CTTCACCGGC
* *
7584654 TTAACGTGTCTATT
1 TTAACGCGTATATT
7584668 TTAACGCGTATATT
1 TTAACGCGTATATT
7584682 TTAACGCGTA
1 TTAACGCGTA
7584692 GATACAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (14 bp):
TTAACGCGTATATT
Found at i:7585786 original size:31 final size:31
Alignment explanation
Indices: 7585712--7585800 Score: 99
Period size: 31 Copynumber: 2.8 Consensus size: 31
7585702 TAACATTGAA
* * *
7585712 TTAACGACGAGTGTCCAAAATGAGAATAGTTT
1 TTAACGA-TAGTGTCTAAAATGAAAATAGTTT
*
7585744 TTAACGGTAGTGTCTAAAATGAAAATAGTTT
1 TTAACGATAGTGTCTAAAATGAAAATAGTTT
* *
7585775 TTTACTATAGTG-CTTAAAATGAAAAT
1 TTAACGATAGTGTC-TAAAATGAAAAT
7585801 TTTTTATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
30 1 0.02
31 42 0.86
32 6 0.12
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (31 bp):
TTAACGATAGTGTCTAAAATGAAAATAGTTT
Found at i:7586529 original size:17 final size:17
Alignment explanation
Indices: 7586493--7586530 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7586483 TCTCCCTTGA
*
7586493 TCTTTAACCTTCTATCT
1 TCTTTAACCTTCTATAT
7586510 TCTTTAACCTT-TCATAT
1 TCTTTAACCTTCT-ATAT
7586527 TCTT
1 TCTT
7586531 ATAGCTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.55
Consensus pattern (17 bp):
TCTTTAACCTTCTATAT
Found at i:7592859 original size:23 final size:23
Alignment explanation
Indices: 7592843--7592999 Score: 260
Period size: 23 Copynumber: 6.8 Consensus size: 23
7592833 ATTTACACAT
*
7592843 AAATCACATTAATATTTAAGCAT
1 AAATCACATTAATATTTAAGCAC
7592866 AAATCACATTAATATTTAAGCAC
1 AAATCACATTAATATTTAAGCAC
*
7592889 AAATCACATTAATTTTTAAGCAC
1 AAATCACATTAATATTTAAGCAC
7592912 AAATCACATTAATATTTAAGCAC
1 AAATCACATTAATATTTAAGCAC
* * * *
7592935 AAGTCACATTAATACTTAAGTAT
1 AAATCACATTAATATTTAAGCAC
7592958 AAATCACATTAATATTTAAGCAC
1 AAATCACATTAATATTTAAGCAC
7592981 AAATCACATTAATATTTAA
1 AAATCACATTAATATTTAA
7593000 TTATATTTCA
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 123 1.00
ACGTcount: A:0.47, C:0.15, G:0.04, T:0.33
Consensus pattern (23 bp):
AAATCACATTAATATTTAAGCAC
Found at i:7593302 original size:66 final size:68
Alignment explanation
Indices: 7593186--7593324 Score: 203
Period size: 66 Copynumber: 2.1 Consensus size: 68
7593176 GATACGTGGA
* * *
7593186 TCTCCAAACACACCAAATATGACTCGTAGAGTCGAACATGTCCCATAAGTGAAGCATATAA-TTA
1 TCTCCAAACACACCAAATATGACTCATAGAGTCGAACATGTCCCAAAAGTGAAGCATA-AAGCTA
7593250 ACAC
65 ACAC
* *
7593254 TCTCCAAACACACCAAA-A-GACTCATAGAGTCGAACATGTCTCAAAAGTGATGCATAAAGCTAA
1 TCTCCAAACACACCAAATATGACTCATAGAGTCGAACATGTCCCAAAAGTGAAGCATAAAGCTAA
7593317 CAC
66 CAC
7593320 TCTCC
1 TCTCC
7593325 TTATTTTCCC
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
65 2 0.03
66 45 0.69
67 1 0.02
68 17 0.26
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.21
Consensus pattern (68 bp):
TCTCCAAACACACCAAATATGACTCATAGAGTCGAACATGTCCCAAAAGTGAAGCATAAAGCTAA
CAC
Found at i:7593663 original size:61 final size:61
Alignment explanation
Indices: 7593589--7593707 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
7593579 TGTCACATGG
* *
7593589 CATAATAACACACCCACATATTATTGTCTTAACAGTCGTCACAAGCTTATAATATATGCGA
1 CATAATAAAACACCCACATATTATTGTCTTAACAGTCATCACAAGCTTATAATATATGCGA
7593650 CATAATAAAACACCCACATATTATTGTCTTAACAGTCATCACAAGCTTATAATATATG
1 CATAATAAAACACCCACATATTATTGTCTTAACAGTCATCACAAGCTTATAATATATG
7593708 TCATAGCATC
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (61 bp):
CATAATAAAACACCCACATATTATTGTCTTAACAGTCATCACAAGCTTATAATATATGCGA
Found at i:7598292 original size:1 final size:1
Alignment explanation
Indices: 7598286--7598310 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
7598276 TCAAGCAGGC
7598286 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
7598311 GTGCTTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:7601779 original size:18 final size:18
Alignment explanation
Indices: 7601758--7601797 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7601748 TTAAAATATT
7601758 TATAAAAACTT-TAAAAAA
1 TATAAAAA-TTATAAAAAA
7601776 TATAAAAATTATAAAAAA
1 TATAAAAATTATAAAAAA
7601794 -ATAA
1 TATAA
7601798 TATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
TATAAAAATTATAAAAAA
Found at i:7602159 original size:12 final size:12
Alignment explanation
Indices: 7602142--7602169 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7602132 AAGTCAAATT
7602142 ATTATATTTATA
1 ATTATATTTATA
7602154 ATTATATTTATA
1 ATTATATTTATA
7602166 ATTA
1 ATTA
7602170 ACATAAATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATTATATTTATA
Found at i:7602492 original size:21 final size:22
Alignment explanation
Indices: 7602454--7602495 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7602444 TTCAAAGGGT
**
7602454 AAAAAAAACCCTTAAATTTTAA
1 AAAAAAAACAATTAAATTTTAA
*
7602476 AAAAAAAACAATTAATTTTT
1 AAAAAAAACAATTAAATTTT
7602496 TTTTTTGCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAAAAACAATTAAATTTTAA
Found at i:7602759 original size:16 final size:16
Alignment explanation
Indices: 7602720--7602751 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7602710 GTGATAAAAA
*
7602720 ATAAAAAATAATAATT
1 ATAAATAATAATAATT
7602736 ATAAATAATAATAATT
1 ATAAATAATAATAATT
7602752 TTTAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
ATAAATAATAATAATT
Found at i:7603166 original size:19 final size:18
Alignment explanation
Indices: 7603144--7603184 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7603134 TTTATAAACC
*
7603144 TTTACAATTTTTTATATTT
1 TTTACAA-TTTTTATAATT
*
7603163 TTTACGATTTTTATAATT
1 TTTACAATTTTTATAATT
7603181 TTTA
1 TTTA
7603185 ATAAATTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTACAATTTTTATAATT
Found at i:7603210 original size:48 final size:47
Alignment explanation
Indices: 7603123--7603214 Score: 125
Period size: 47 Copynumber: 1.9 Consensus size: 47
7603113 GCATTTTATG
*
7603123 TTTTTATGATTTTTATAAACCTTTACAATTTTTTATATTTTTTACGA
1 TTTTTATAATTTTTATAAACCTTTACAATTTTTTATATTTTTTACGA
*
7603170 TTTTTATAATTTTTAATAAA-TTTTA-AATATTGTTTATATTTTTTA
1 TTTTTATAATTTTT-ATAAACCTTTACAAT-TT-TTTATATTTTTTA
7603215 TTAAAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
46 3 0.08
47 19 0.47
48 18 0.45
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (47 bp):
TTTTTATAATTTTTATAAACCTTTACAATTTTTTATATTTTTTACGA
Found at i:7603826 original size:11 final size:11
Alignment explanation
Indices: 7603804--7603837 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7603794 AATTTGAATA
7603804 TTATTTA-AAT
1 TTATTTATAAT
*
7603814 TTATTTATTAT
1 TTATTTATAAT
7603825 TTATTTATAAT
1 TTATTTATAAT
7603836 TT
1 TT
7603838 TCACAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTATTTATAAT
Found at i:7604565 original size:28 final size:30
Alignment explanation
Indices: 7604510--7604565 Score: 73
Period size: 28 Copynumber: 1.9 Consensus size: 30
7604500 AAAAAAATAT
*
7604510 TAAAACAATTATATGAAAATTTTCAATAAA
1 TAAAACAATTATATGAAAATTTTAAATAAA
7604540 TAAAA-AATT-TATG-AAATTATTAAATA
1 TAAAACAATTATATGAAAATT-TTAAATA
7604566 TTAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 5 0.21
28 10 0.42
29 4 0.17
30 5 0.21
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (30 bp):
TAAAACAATTATATGAAAATTTTAAATAAA
Found at i:7611082 original size:21 final size:20
Alignment explanation
Indices: 7611055--7611094 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7611045 TAAATTGTGT
7611055 TAAAAAAATGAAAGTTGTCC
1 TAAAAAAATGAAAGTTGTCC
7611075 TAAAAAAATGAAAGTTGTCC
1 TAAAAAAATGAAAGTTGTCC
7611095 GTATTAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (20 bp):
TAAAAAAATGAAAGTTGTCC
Found at i:7616835 original size:22 final size:22
Alignment explanation
Indices: 7616795--7616855 Score: 81
Period size: 22 Copynumber: 2.8 Consensus size: 22
7616785 CGATCTAAGG
*
7616795 AAAAATAAAAG-AAACAGAATT
1 AAAAATAAAAGAAAATAGAATT
7616816 AAAAATAAAAGAAAATAGAATT
1 AAAAATAAAAGAAAATAGAATT
*
7616838 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
7616856 GGAAGTCGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
21 11 0.31
22 24 0.67
23 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAATT
Found at i:7616846 original size:15 final size:16
Alignment explanation
Indices: 7616821--7616850 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7616811 GAATTAAAAA
7616821 TAAAAGAAAATAGAAT
1 TAAAAGAAAATAGAAT
7616837 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
7616851 AATAGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
TAAAAGAAAATAGAAT
Found at i:7617685 original size:19 final size:20
Alignment explanation
Indices: 7617642--7617686 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
7617632 ATAAACATAA
7617642 ATTAAATACAAATTTAAATG
1 ATTAAATACAAATTTAAATG
*
7617662 A-TAAATA-ATATCTTAAAT-
1 ATTAAATACAAAT-TTAAATG
7617680 ATTAAAT
1 ATTAAAT
7617687 CCTAATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 4 0.18
19 17 0.77
20 1 0.05
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
ATTAAATACAAATTTAAATG
Found at i:7618450 original size:108 final size:107
Alignment explanation
Indices: 7618272--7618468 Score: 245
Period size: 108 Copynumber: 1.8 Consensus size: 107
7618262 ATACATTGGA
* * * **
7618272 CCTTTTGATGCGAAATGAAATGACACCCAAGCACTCCATCCCGGTTACTCAGCCCAACATGCTCT
1 CCTTTTGACGCGAAATGAAATGACAACCAAGCACTCCATCCCGATTACTCAGCCCAACACACTCT
*
7618337 CAATTT-TTTTCTTTCTCTTTTTTTTTTTGTAGAATGCGTTAGC
66 CAATTTATTAT-TTT-TCTTTTTTTTTTTGTAGAATGCGTTAGC
* * * * *
7618380 CCTTTTGACGCGAAGTGAAATGACAACCAAGCACTCCA-CCTCGATTACTTAGTCTAACACATTC
1 CCTTTTGACGCGAAATGAAATGACAACCAAGCACTCCATCC-CGATTACTCAGCCCAACACACTC
*
7618444 TGAATTTATTATTTTTCTTTTTTTT
65 TCAATTTATTATTTTTCTTTTTTTT
7618469 ATTCGGGTTA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
107 12 0.16
108 60 0.80
109 3 0.04
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (107 bp):
CCTTTTGACGCGAAATGAAATGACAACCAAGCACTCCATCCCGATTACTCAGCCCAACACACTCT
CAATTTATTATTTTTCTTTTTTTTTTTGTAGAATGCGTTAGC
Found at i:7619227 original size:5 final size:5
Alignment explanation
Indices: 7619201--7619247 Score: 55
Period size: 5 Copynumber: 9.8 Consensus size: 5
7619191 GAGTTTCCCA
*
7619201 AAAAA AAAAT -AAAT -AAAT -AAAT AAAAT AAAAT AAAAT AAAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAA
7619248 ATAATTGGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
4 12 0.31
5 22 0.56
6 5 0.13
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:7619249 original size:22 final size:21
Alignment explanation
Indices: 7619200--7619251 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
7619190 CGAGTTTCCC
7619200 AAAAAA-AAAATAAATAAATA
1 AAAAAATAAAATAAATAAATA
7619220 AATAAAATAAAATAAAATAAA-A
1 AA-AAAATAAAAT-AAATAAATA
7619242 ATAAAAATAA
1 A-AAAAATAA
7619252 TTGGGTTGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 2 0.07
21 4 0.14
22 14 0.50
23 8 0.29
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAAAATAAAATAAATAAATA
Found at i:7622030 original size:22 final size:22
Alignment explanation
Indices: 7621988--7622047 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
7621978 CGATCTAAGG
*
7621988 AAAAAT-AAAG-AAACAGAATT
1 AAAAATAAAAGAAAATAGAATT
7622008 AAAAATAAAAGAAAATAGAATT
1 AAAAATAAAAGAAAATAGAATT
*
7622030 AAAAGA-AATAGAAAATAG
1 AAAA-ATAAAAGAAAATAG
7622048 TGAAGTCGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.17
21 4 0.11
22 24 0.69
23 1 0.03
ACGTcount: A:0.72, C:0.02, G:0.12, T:0.15
Consensus pattern (22 bp):
AAAAATAAAAGAAAATAGAATT
Found at i:7622038 original size:15 final size:16
Alignment explanation
Indices: 7622013--7622042 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7622003 GAATTAAAAA
7622013 TAAAAGAAAATAGAAT
1 TAAAAGAAAATAGAAT
7622029 TAAAAG-AAATAGAA
1 TAAAAGAAAATAGAA
7622043 AATAGTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
TAAAAGAAAATAGAAT
Found at i:7622890 original size:19 final size:20
Alignment explanation
Indices: 7622847--7622891 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
7622837 ATAAACATAA
7622847 ATTAAATACAAATTTAAATG
1 ATTAAATACAAATTTAAATG
*
7622867 A-TAAATA-ATATCTTAAAT-
1 ATTAAATACAAAT-TTAAATG
7622885 ATTAAAT
1 ATTAAAT
7622892 CCTAATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 4 0.18
19 17 0.77
20 1 0.05
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
ATTAAATACAAATTTAAATG
Found at i:7631730 original size:3 final size:3
Alignment explanation
Indices: 7631722--7631753 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7631712 ATGTTAACTC
7631722 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7631754 TAGACAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7635409 original size:6 final size:6
Alignment explanation
Indices: 7635370--7635406 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
7635360 GAGGGACGGG
*
7635370 GTGGGA GTGGGA GTGGGA GTGGGA GTGGGA GAGGGA G
1 GTGGGA GTGGGA GTGGGA GTGGGA GTGGGA GTGGGA G
7635407 AGGAATAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.19, C:0.00, G:0.68, T:0.14
Consensus pattern (6 bp):
GTGGGA
Done.