Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 32 of 144
Found at i:7943571 original size:15 final size:15
Alignment explanation
Indices: 7943551--7943581 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7943541 CCCAAACCTT
7943551 AAGACACAAACCCTC
1 AAGACACAAACCCTC
7943566 AAGACACAAACCCTC
1 AAGACACAAACCCTC
7943581 A
1 A
7943582 CAAGGAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.39, G:0.06, T:0.06
Consensus pattern (15 bp):
AAGACACAAACCCTC
Found at i:7988785 original size:21 final size:21
Alignment explanation
Indices: 7988759--7988800 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7988749 CTGTTAAGAA
*
7988759 GAAATTTTCTAA-TTACGTTTT
1 GAAATTTT-TAAGTTACATTTT
7988780 GAAATTTTTAAGTTACATTTT
1 GAAATTTTTAAGTTACATTTT
7988801 TATAGTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (21 bp):
GAAATTTTTAAGTTACATTTT
Found at i:8002848 original size:15 final size:16
Alignment explanation
Indices: 8002817--8002862 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 16
8002807 TCAATCACGT
*
8002817 AGAAAAAAAGAAG--A
1 AGAAAAAGAGAAGCAA
8002831 AGAAAAAGA-AAGCAA
1 AGAAAAAGAGAAGCAA
8002846 AGAAAAAGAGAAGCAA
1 AGAAAAAGAGAAGCAA
8002862 A
1 A
8002863 ATATATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 3 0.11
14 8 0.29
15 10 0.36
16 7 0.25
ACGTcount: A:0.74, C:0.04, G:0.22, T:0.00
Consensus pattern (16 bp):
AGAAAAAGAGAAGCAA
Found at i:8002887 original size:16 final size:17
Alignment explanation
Indices: 8002866--8002897 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8002856 AAGCAAAATA
8002866 TATATATA-TATATTGC
1 TATATATACTATATTGC
8002882 TATATATACTATATTG
1 TATATATACTATATTG
8002898 GTTAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (17 bp):
TATATATACTATATTGC
Found at i:8005931 original size:13 final size:13
Alignment explanation
Indices: 8005895--8005978 Score: 80
Period size: 13 Copynumber: 6.5 Consensus size: 13
8005885 ATTTATGTAA
* *
8005895 ATGAAATGGTAAA
1 ATGAAATGGTTAT
*
8005908 ATGAAACGGTTAT
1 ATGAAATGGTTAT
8005921 ATGAAATGGTTAT
1 ATGAAATGGTTAT
* *
8005934 AAGGAATGGTTAT
1 ATGAAATGGTTAT
* *
8005947 AGGAAATGATT-T
1 ATGAAATGGTTAT
8005959 GATGAAATGGTTAT
1 -ATGAAATGGTTAT
*
8005973 GTGAAA
1 ATGAAA
8005979 ATATATGTAT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
12 1 0.02
13 55 0.96
14 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.26, T:0.31
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:8010943 original size:13 final size:13
Alignment explanation
Indices: 8010907--8010977 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 13
8010897 ATATATGTAA
* *
8010907 ATGAAATGGTAAA
1 ATGAAATGGTTAT
*
8010920 ATGAAACGGTTAT
1 ATGAAATGGTTAT
*
8010933 ATGAAATGGTTCT
1 ATGAAATGGTTAT
* *
8010946 AAGGAATGGTTAT
1 ATGAAATGGTTAT
* *
8010959 AGGAAATGATTAT
1 ATGAAATGGTTAT
*
8010972 GTGAAA
1 ATGAAA
8010978 ATATATGTAT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (13 bp):
ATGAAATGGTTAT
Found at i:8016293 original size:25 final size:25
Alignment explanation
Indices: 8016256--8016323 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
8016246 AATTTCTGAA
* * * *
8016256 GTCTGACTTGTAAGAGCGATATTCT
1 GTCTGGCTCGTAAGAGCGATAATAT
*
8016281 GTCTGGCTCGTAAGAGCGGTAATAT
1 GTCTGGCTCGTAAGAGCGATAATAT
*
8016306 GTTTGGGCTCGTAAGAGC
1 GTCT-GGCTCGTAAGAGC
8016324 TAAACCCTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 23 0.64
26 13 0.36
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (25 bp):
GTCTGGCTCGTAAGAGCGATAATAT
Found at i:8019580 original size:61 final size:62
Alignment explanation
Indices: 8019485--8019604 Score: 145
Period size: 61 Copynumber: 2.0 Consensus size: 62
8019475 TGTCAACTCG
* * * *
8019485 CATTTGATACTCACGGTGACACAAAGTCATCGGACC-CTTAATCCATAATGGAATTCATTAA
1 CATTTAATACTCACGATGACACAAAGTCATCGGACCTCTTAATCCATAAAGAAATTCATTAA
* * **
8019546 CATTTAATACTCACGATGACATATAGTC-TACGGACCTCTTGTTCCATAAAGAAATTCAT
1 CATTTAATACTCACGATGACACAAAGTCAT-CGGACCTCTTAATCCATAAAGAAATTCAT
8019605 ATACTCAAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
60 1 0.02
61 30 0.61
62 18 0.37
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (62 bp):
CATTTAATACTCACGATGACACAAAGTCATCGGACCTCTTAATCCATAAAGAAATTCATTAA
Found at i:8019677 original size:52 final size:52
Alignment explanation
Indices: 8019599--8019792 Score: 325
Period size: 52 Copynumber: 3.7 Consensus size: 52
8019589 CCATAAAGAA
* * * *
8019599 ATTCATATACTCAAGATGACATTTAGTCATCGGACCTTATAATCCATGAAGG
1 ATTCATGTACTCATGATGACACTTAGTCATCAGACCTTATAATCCATGAAGG
8019651 ATTCATGTACTCATGATGACACTTAGTCATCAGACCTTATAATCCATGAAGG
1 ATTCATGTACTCATGATGACACTTAGTCATCAGACCTTATAATCCATGAAGG
*
8019703 ATTCATGTACTCATGATGACACTTAGTCATCGGACCTTATAATCCATGAAGG
1 ATTCATGTACTCATGATGACACTTAGTCATCAGACCTTATAATCCATGAAGG
* *
8019755 ATTCATGTACTCACGATGACACTTAGTTATCAGACCTT
1 ATTCATGTACTCATGATGACACTTAGTCATCAGACCTT
8019793 TTTTCATTTA
Statistics
Matches: 134, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 134 1.00
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.31
Consensus pattern (52 bp):
ATTCATGTACTCATGATGACACTTAGTCATCAGACCTTATAATCCATGAAGG
Found at i:8020696 original size:20 final size:21
Alignment explanation
Indices: 8020653--8020696 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8020643 ACTTTCATCA
* *
8020653 TTAAGCTTTAATTAAACATTT
1 TTAACCTTTAATTAAACATAT
*
8020674 TTAACCTTT-ATTAAACCTAT
1 TTAACCTTTAATTAAACATAT
8020694 TTA
1 TTA
8020697 TAATCAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (21 bp):
TTAACCTTTAATTAAACATAT
Found at i:8021138 original size:93 final size:93
Alignment explanation
Indices: 8020979--8021170 Score: 303
Period size: 93 Copynumber: 2.1 Consensus size: 93
8020969 CCCATGTAGC
* * *
8020979 TTCTTTGAGCCCGTGTCAGTTCCACGGAACTTTTACCAATGGTACCCTTTTGTTTCGCAGTTCTT
1 TTCTTCGAGCCCATGTCAGTTCCACAGAACTTTTACCAATGGTACCCTTTTGTTTCGCAGTTCTT
* * *
8021044 TTACCTTGTAAGCCAAAATCTAAATCGA
66 TTACCTCGCAAGCCAAAATATAAATCGA
*
8021072 TTCTTCGAGCCCATGTTAGTTCCACAGAACTTTTACCAATGGTACCCTTTTGTTTCGCAGTTCTT
1 TTCTTCGAGCCCATGTCAGTTCCACAGAACTTTTACCAATGGTACCCTTTTGTTTCGCAGTTCTT
*
8021137 TTACCTCGCAAGCCAGAATATAAATCGA
66 TTACCTCGCAAGCCAAAATATAAATCGA
*
8021165 CTCTTC
1 TTCTTC
8021171 AGAATACAAC
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 90 1.00
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (93 bp):
TTCTTCGAGCCCATGTCAGTTCCACAGAACTTTTACCAATGGTACCCTTTTGTTTCGCAGTTCTT
TTACCTCGCAAGCCAAAATATAAATCGA
Found at i:8026925 original size:52 final size:52
Alignment explanation
Indices: 8026857--8027098 Score: 403
Period size: 52 Copynumber: 4.7 Consensus size: 52
8026847 GTAAAGAAAC
* * * *
8026857 TCATATACTCACGATGACAGTTAGTCATCAGACCTTATAATCCGTGAAGGAT
1 TCATGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
*
8026909 TCTTGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
1 TCATGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
*
8026961 TCATGTACTCACGATGACACTTAGTCATCAGACCTTATAATCCATGAAGGAT
1 TCATGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
* *
8027013 TCATGTACTCATGATGACACTTAGTCATTGGACCTTATAATCCATGAAGGAT
1 TCATGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
*
8027065 TCATGTACTCATGATGACACTTAGTCATCGGACC
1 TCATGTACTCACGATGACACTTAGTCATCGGACC
8027099 CTTTTTCATT
Statistics
Matches: 179, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 179 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (52 bp):
TCATGTACTCACGATGACACTTAGTCATCGGACCTTATAATCCATGAAGGAT
Found at i:8028010 original size:20 final size:21
Alignment explanation
Indices: 8027967--8028010 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
8027957 ACTTTCATCA
* *
8027967 TTAAGCTTTAATTAAACATTT
1 TTAACCTTTAATTAAACATAT
*
8027988 TTAACCTTT-ATTAAACCTAT
1 TTAACCTTTAATTAAACATAT
8028008 TTA
1 TTA
8028011 TAATCAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (21 bp):
TTAACCTTTAATTAAACATAT
Found at i:8036383 original size:30 final size:30
Alignment explanation
Indices: 8036347--8036406 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
8036337 AAGGTTTTGG
* *
8036347 GTAGAAAACCTTAAGGGGAAGTGGTTCTAT
1 GTAGAAAACCTTAAGGGAAAGTAGTTCTAT
8036377 GTAGAAAACCTTAAGGGAAAGTAGTTCTAT
1 GTAGAAAACCTTAAGGGAAAGTAGTTCTAT
8036407 CTTACCTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (30 bp):
GTAGAAAACCTTAAGGGAAAGTAGTTCTAT
Found at i:8044178 original size:63 final size:62
Alignment explanation
Indices: 8044096--8044220 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 62
8044086 CCATCTTGGA
* *
8044096 TTGCATCCTTAAAAAGTGACAATCCACTTCAATTACAATATGCAATGCAGATTGGCTATCAT
1 TTGCATCCCTAAAAAGTGACAATCCACTTCAATTACAATATGCAATGCAGATTGACTATCAT
*
8044158 TTGCATCCCTAACAAAGTGACAATCCACTTCAATTGCAATATGCAATGCAGATTGACTATCAT
1 TTGCATCCCTAA-AAAGTGACAATCCACTTCAATTACAATATGCAATGCAGATTGACTATCAT
8044221 AAGCAAATAG
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
62 11 0.19
63 48 0.81
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (62 bp):
TTGCATCCCTAAAAAGTGACAATCCACTTCAATTACAATATGCAATGCAGATTGACTATCAT
Found at i:8045047 original size:26 final size:28
Alignment explanation
Indices: 8044989--8045047 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
8044979 CATTAGGAAT
*
8044989 ATATTTCTAAATATGTAAATGTATAATA
1 ATATTTCTAAATAAGTAAATGTATAATA
8045017 A-ATTTCTAAATAAG-AAA-G-ATATATA
1 ATATTTCTAAATAAGTAAATGTATA-ATA
8045042 ATATTT
1 ATATTT
8045048 TTAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 3 0.11
25 5 0.18
26 7 0.25
27 12 0.43
28 1 0.04
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (28 bp):
ATATTTCTAAATAAGTAAATGTATAATA
Found at i:8055573 original size:70 final size:70
Alignment explanation
Indices: 8055457--8055588 Score: 165
Period size: 70 Copynumber: 1.9 Consensus size: 70
8055447 ATAGCTTCCC
* ** * * * *
8055457 CTGTGTCGCGACAAACCTGTCAGTCTTGTTATTCCAGTAGTCTGACCCCTTTGTTGCAACATTGT
1 CTGTGTCGCGACAAACCTATCAGTCTTGAAATTCCAGCAATCTGACCCCTATGTCGCAACATTGT
8055522 ACCAT
66 ACCAT
* ** *
8055527 CTGTGTCGCGACAAACCTATCAGTTTTGAAATTTTAGCAATTTGACCCCTATGTCGCAACAT
1 CTGTGTCGCGACAAACCTATCAGTCTTGAAATTCCAGCAATCTGACCCCTATGTCGCAACAT
8055589 ACAAAGGGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 51 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.33
Consensus pattern (70 bp):
CTGTGTCGCGACAAACCTATCAGTCTTGAAATTCCAGCAATCTGACCCCTATGTCGCAACATTGT
ACCAT
Found at i:8065698 original size:20 final size:20
Alignment explanation
Indices: 8065673--8065710 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8065663 AAATTTAATT
8065673 AAATAAAAAGAAAAATAAGA
1 AAATAAAAAGAAAAATAAGA
*
8065693 AAATAAAAATAAAAATAA
1 AAATAAAAAGAAAAATAA
8065711 ATTAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (20 bp):
AAATAAAAAGAAAAATAAGA
Found at i:8065701 original size:6 final size:6
Alignment explanation
Indices: 8065673--8065711 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
8065663 AAATTTAATT
*
8065673 AAATAA AAAGAA AAATAAGA AAATAA AAATAA AAATAA A
1 AAATAA AAATAA AAAT-A-A AAATAA AAATAA AAATAA A
8065712 TTAAATAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 22 0.76
7 2 0.07
8 5 0.17
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:8074359 original size:23 final size:23
Alignment explanation
Indices: 8074323--8074368 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8074313 CCTACTTGGA
*
8074323 GAGAAAAGGAAGGTGAGA-GAAG
1 GAGAAAAAGAAGGTGAGATGAAG
8074345 GAGAAATAAGAAGGTGAGATGAAG
1 GAGAAA-AAGAAGGTGAGATGAAG
8074369 TGGGACAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.29
23 11 0.52
24 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.41, T:0.09
Consensus pattern (23 bp):
GAGAAAAAGAAGGTGAGATGAAG
Found at i:8076406 original size:60 final size:60
Alignment explanation
Indices: 8076282--8076406 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 60
8076272 AGTAATGTAC
* *
8076282 ACAAGATGCCAGTAATGTGAATAAGCCACCAGTAGTACAAATAAACTGCCAGCAATGCAG
1 ACAAGATGCCAGTAATGTGAACAAGCCACCAGTAGTACAAATAAACTGCCAGCAACGCAG
* * * * * * * * *
8076342 ACAAGTTGCCAGTATTGTGGACAAGCCACTAGTAGTTCAGATAAACTGCTAGTAACGCAT
1 ACAAGATGCCAGTAATGTGAACAAGCCACCAGTAGTACAAATAAACTGCCAGCAACGCAG
8076402 ACAAG
1 ACAAG
8076407 CTGCTAATAC
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (60 bp):
ACAAGATGCCAGTAATGTGAACAAGCCACCAGTAGTACAAATAAACTGCCAGCAACGCAG
Found at i:8076538 original size:35 final size:35
Alignment explanation
Indices: 8076498--8076588 Score: 94
Period size: 37 Copynumber: 2.5 Consensus size: 35
8076488 CAGTACAATA
* *
8076498 AGCATGATTAACATGCAACTGTAGT-AGAATCAGT
1 AGCATGATTAACATGCAACAGTAATCAGAATCAGT
*
8076532 AGGCATGATTTAAACATGCTACCAGTAATCAGAATCAGT
1 A-GCATGA-TT-AACATGC-AACAGTAATCAGAATCAGT
*
8076571 AGCATGAATTATCATGCA
1 AGCATG-ATTAACATGCA
8076589 TTCGGTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
34 1 0.02
35 6 0.13
36 3 0.06
37 13 0.28
38 13 0.28
39 11 0.23
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (35 bp):
AGCATGATTAACATGCAACAGTAATCAGAATCAGT
Found at i:8081691 original size:46 final size:46
Alignment explanation
Indices: 8081624--8081713 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
8081614 AATTTCATAC
*
8081624 AATCCCTTCTTATAAGTTTAAACGGTAAAAGTATATTAGCTCTGGG
1 AATCCCTTCTCATAAGTTTAAACGGTAAAAGTATATTAGCTCTGGG
*
8081670 AATCCCTTCTCATAAGTTTAAACGGTTAAAGTATATTAGCTCTG
1 AATCCCTTCTCATAAGTTTAAACGGTAAAAGTATATTAGCTCTG
8081714 AGAAAATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (46 bp):
AATCCCTTCTCATAAGTTTAAACGGTAAAAGTATATTAGCTCTGGG
Found at i:8087276 original size:17 final size:16
Alignment explanation
Indices: 8087256--8087303 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
8087246 AGTTTTTCCA
*
8087256 AAATTTAAACTTAATAT
1 AAATTTAAA-TTAAAAT
*
8087273 AAATTGAAATTTAAAAT
1 AAATTTAAA-TTAAAAT
*
8087290 AAATATAAATTAAA
1 AAATTTAAATTAAA
8087304 TGTCCAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 5 0.19
17 21 0.81
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (16 bp):
AAATTTAAATTAAAAT
Found at i:8087282 original size:23 final size:22
Alignment explanation
Indices: 8087256--8087304 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 22
8087246 AGTTTTTCCA
* *
8087256 AAATTTAAACTTAATATAAATT
1 AAATTTAAAATAAATATAAATT
8087278 GAAATTTAAAATAAATATAAATT
1 -AAATTTAAAATAAATATAAATT
8087301 AAAT
1 AAAT
8087305 GTCCAAATAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AAATTTAAAATAAATATAAATT
Found at i:8087312 original size:23 final size:23
Alignment explanation
Indices: 8087268--8087313 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8087258 ATTTAAACTT
*
8087268 AATATAAATTGAAATTTAAAATA
1 AATATAAATTGAAATTCAAAATA
*
8087291 AATATAAATT-AAATGTCCAAATA
1 AATATAAATTGAAAT-TCAAAATA
8087314 CAAGGAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
AATATAAATTGAAATTCAAAATA
Found at i:8088066 original size:29 final size:29
Alignment explanation
Indices: 8088029--8088096 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
8088019 GATGACTGTT
** *
8088029 ATAATAATAAATGTTAATAA-ATATTTTTA
1 ATAATAATAAACATTAATAATA-ATGTTTA
8088058 ATAATAATAAACATTAATAATAATGTTTA
1 ATAATAATAAACATTAATAATAATGTTTA
*
8088087 ATATTAATAA
1 ATAATAATAA
8088097 TAATAATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (29 bp):
ATAATAATAAACATTAATAATAATGTTTA
Found at i:8088078 original size:19 final size:19
Alignment explanation
Indices: 8088056--8088104 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
8088046 TAAATATTTT
8088056 TAATAATAATAAACATTAA
1 TAATAATAATAAACATTAA
** * *
8088075 TAATAATGTTTAATATTAA
1 TAATAATAATAAACATTAA
8088094 TAATAATAATA
1 TAATAATAATA
8088105 TAAAAAAGAG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
TAATAATAATAAACATTAA
Found at i:8089197 original size:29 final size:30
Alignment explanation
Indices: 8089155--8089229 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 30
8089145 TGTGATCCCG
*
8089155 AAAC-TTCCAAAAATTACCA-TTTTACCCCC
1 AAACTTTCC-AAAATTACCATTTTTAACCCC
*
8089184 AAACTTTCCAAAATT-CTATTTTTAACCCC
1 AAACTTTCCAAAATTACCATTTTTAACCCC
* *
8089213 GAATTTTCTCAAAATTA
1 AAACTTTC-CAAAATTA
8089230 AATTTTTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 2 0.05
29 25 0.66
30 11 0.29
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (30 bp):
AAACTTTCCAAAATTACCATTTTTAACCCC
Found at i:8089235 original size:30 final size:29
Alignment explanation
Indices: 8089174--8089236 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
8089164 AAAATTACCA
* **
8089174 TTTTACCCCCAAACTTTCCAAAATTCTAT
1 TTTTAACCCCAAACTTTCCAAAATTAAAT
* *
8089203 TTTTAACCCCGAATTTTCTCAAAATTAAAT
1 TTTTAACCCCAAACTTTC-CAAAATTAAAT
8089233 TTTT
1 TTTT
8089237 GCCATTGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 15 0.54
30 13 0.46
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.43
Consensus pattern (29 bp):
TTTTAACCCCAAACTTTCCAAAATTAAAT
Found at i:8090623 original size:35 final size:36
Alignment explanation
Indices: 8090508--8090638 Score: 201
Period size: 36 Copynumber: 3.7 Consensus size: 36
8090498 GGTTTCGACA
* *
8090508 TATGTTATTCATGCCATGTGACAGTAAATATGTTGG
1 TATGTTATTCATGCCATGTGACAGCAAATATGTGGG
*
8090544 TATGTTATTCATGCCATGTGACAGCAAATATGTGAG
1 TATGTTATTCATGCCATGTGACAGCAAATATGTGGG
* * *
8090580 TATTTTATTCATGCCATGAGGCAG-AAATATGTGGG
1 TATGTTATTCATGCCATGTGACAGCAAATATGTGGG
8090615 TATGTTATTCATGCCATGTGACAG
1 TATGTTATTCATGCCATGTGACAG
8090639 TGAATGTATT
Statistics
Matches: 85, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
35 31 0.36
36 54 0.64
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (36 bp):
TATGTTATTCATGCCATGTGACAGCAAATATGTGGG
Found at i:8090999 original size:66 final size:68
Alignment explanation
Indices: 8090893--8091031 Score: 185
Period size: 66 Copynumber: 2.1 Consensus size: 68
8090883 GGGGAAAGAA
* * **
8090893 GGAGAGTGTTAGCTTTACACTTCACTTTTGAGATATGTTCGACTCTATGAGTC-T-TTTGGTGTG
1 GGAGAGTGTTAGCTTTACACTTCACTTATGAGACATGTTCGACTCTACAAGTCATATTTGGTGTG
8090956 TTT
66 TTT
** *
8090959 GGAGAGTGTTAG-TTATATGCTTCACTTATGGGACATGTTCGACTCTACAAGTCATATTTGGTGT
1 GGAGAGTGTTAGCTT-TACACTTCACTTATGAGACATGTTCGACTCTACAAGTCATATTTGGTGT
8091023 GTTT
65 GTTT
8091027 GGAGA
1 GGAGA
8091032 TCCACGTATC
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
65 2 0.03
66 43 0.68
67 1 0.02
68 17 0.27
ACGTcount: A:0.21, C:0.13, G:0.26, T:0.40
Consensus pattern (68 bp):
GGAGAGTGTTAGCTTTACACTTCACTTATGAGACATGTTCGACTCTACAAGTCATATTTGGTGTG
TTT
Found at i:8091155 original size:23 final size:23
Alignment explanation
Indices: 8091127--8091298 Score: 202
Period size: 23 Copynumber: 7.5 Consensus size: 23
8091117 ATGAGTTATA
* *
8091127 TGCTTAAATATTAATGTAATTTA
1 TGCTTAAATATTAATGTGATTTG
* *
8091150 TTCTTAAATACTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
*
8091173 TGCTTAAATATTAATGTTATTTG
1 TGCTTAAATATTAATGTGATTTG
*
8091196 TGCTTAAATATTAATGTTATTTG
1 TGCTTAAATATTAATGTGATTTG
8091219 TGCTTAAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
** * * *
8091242 TAATTAATTATTAATGTGGTTTA
1 TGCTTAAATATTAATGTGATTTG
* ** *
8091265 TGCTTAAATGTTAAAAT-ATTTA
1 TGCTTAAATATTAATGTGATTTG
8091287 TGCTTAAATATT
1 TGCTTAAATATT
8091299 CGTATGATTA
Statistics
Matches: 128, Mismatches: 21, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
22 15 0.12
23 113 0.88
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:8091238 original size:69 final size:69
Alignment explanation
Indices: 8091125--8091298 Score: 224
Period size: 69 Copynumber: 2.5 Consensus size: 69
8091115 TCATGAGTTA
* * * **
8091125 TATGCTTAAATATTAATGTAATTTATTCTTAAATACTAATGTGATTTGTGCTTAAATATTAATGT
1 TATGCTTAAATATTAATGTTATTTATGCTTAAATATTAATGTGATTTGTAATTAAATATTAATGT
*
8091190 TATT
66 GATT
* * *
8091194 TGTGCTTAAATATTAATGTTATTTGTGCTTAAATATTAATGTGATTTGTAATTAATTATTAATGT
1 TATGCTTAAATATTAATGTTATTTATGCTTAAATATTAATGTGATTTGTAATTAAATATTAATGT
*
8091259 GGTT
66 GATT
* **
8091263 TATGCTTAAATGTTAA-AATATTTATGCTTAAATATT
1 TATGCTTAAATATTAATGTTATTTATGCTTAAATATT
8091299 CGTATGATTA
Statistics
Matches: 90, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
68 17 0.19
69 73 0.81
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (69 bp):
TATGCTTAAATATTAATGTTATTTATGCTTAAATATTAATGTGATTTGTAATTAAATATTAATGT
GATT
Found at i:8093963 original size:43 final size:43
Alignment explanation
Indices: 8093915--8094004 Score: 162
Period size: 43 Copynumber: 2.1 Consensus size: 43
8093905 TGAACATATC
8093915 CTTAACATCATAATCAAACAGGACACTGATTCATTCATCAACG
1 CTTAACATCATAATCAAACAGGACACTGATTCATTCATCAACG
* *
8093958 CTTAACATCATAATCAAATAGGACACTGATTCATTCATCAATG
1 CTTAACATCATAATCAAACAGGACACTGATTCATTCATCAACG
8094001 CTTA
1 CTTA
8094005 CACACAGATG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (43 bp):
CTTAACATCATAATCAAACAGGACACTGATTCATTCATCAACG
Found at i:8100296 original size:25 final size:25
Alignment explanation
Indices: 8100222--8100299 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
8100212 TTGGTTAAAC
* *
8100222 TCTATCTGGCTCAG-AAGAGCAATAA
1 TCTATCTAGCTC-GTAAGAGCAATAT
* * * **
8100247 CCTGTCTAGCTCGTATGAGTGATAT
1 TCTATCTAGCTCGTAAGAGCAATAT
*
8100272 TCTATCTAGCTTGTAAGAGCAATAT
1 TCTATCTAGCTCGTAAGAGCAATAT
8100297 TCT
1 TCT
8100300 GTCTGGGCTC
Statistics
Matches: 39, Mismatches: 13, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TCTATCTAGCTCGTAAGAGCAATAT
Found at i:8101327 original size:56 final size:56
Alignment explanation
Indices: 8101241--8101352 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
8101231 TTGCTGAGAT
* *
8101241 ATGAGGATTTAATCAATGGCAAATAATCTGAAAGACCTTAGGACCCTAACTGGTGA
1 ATGAGGATTTAATCAACGGCAAATAATCTGAAAGACCTCAGGACCCTAACTGGTGA
* *
8101297 ATGAGGATTTAATCAACGGTAAATAATCTGAAAGACCTCAGGACCCTAATTGGTGA
1 ATGAGGATTTAATCAACGGCAAATAATCTGAAAGACCTCAGGACCCTAACTGGTGA
8101353 CGGTGTCAGG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (56 bp):
ATGAGGATTTAATCAACGGCAAATAATCTGAAAGACCTCAGGACCCTAACTGGTGA
Found at i:8107193 original size:23 final size:23
Alignment explanation
Indices: 8107167--8107333 Score: 219
Period size: 23 Copynumber: 7.3 Consensus size: 23
8107157 GAGTTATATA
* * *
8107167 CTTAAATATTAAAGTGATTTATT
1 CTTAAATATTAATGTGATTTGTG
*
8107190 CTTAAATACTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
8107213 CTTAAATATTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
*
8107236 CTTAAATATTAATGTGACTTGTG
1 CTTAAATATTAATGTGATTTGTG
* *
8107259 CTTAAATGTTAATGTGATTTGTA
1 CTTAAATATTAATGTGATTTGTG
*
8107282 CTTAAATATTAATGTGATTTATG
1 CTTAAATATTAATGTGATTTGTG
* ** *
8107305 CTTAAATGTTAAAAT-ATTTATG
1 CTTAAATATTAATGTGATTTGTG
8107327 CTTAAAT
1 CTTAAAT
8107334 TTTCATATGA
Statistics
Matches: 129, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
22 14 0.11
23 115 0.89
ACGTcount: A:0.34, C:0.06, G:0.14, T:0.46
Consensus pattern (23 bp):
CTTAAATATTAATGTGATTTGTG
Found at i:8108489 original size:2 final size:2
Alignment explanation
Indices: 8108482--8108512 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8108472 TAATTGTTAC
*
8108482 GT GT GT GT GT GT GT GT GT GT GT GT GT TT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
8108513 CATATTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
GT
Found at i:8111651 original size:12 final size:13
Alignment explanation
Indices: 8111616--8111648 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8111606 CTTATTTTGG
8111616 ATTTATTTTATTT
1 ATTTATTTTATTT
*
8111629 -TATATTTTATTT
1 ATTTATTTTATTT
8111641 ATTTATTT
1 ATTTATTT
8111649 ATTATTCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTATTTTATTT
Found at i:8111751 original size:9 final size:9
Alignment explanation
Indices: 8111737--8111765 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
8111727 TTTATTTTCT
8111737 TTTTATTTG
1 TTTTATTTG
8111746 TTTTATTTG
1 TTTTATTTG
8111755 TTTTATTTG
1 TTTTATTTG
8111764 TT
1 TT
8111766 GGGCTCGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.10, T:0.79
Consensus pattern (9 bp):
TTTTATTTG
Found at i:8112344 original size:50 final size:50
Alignment explanation
Indices: 8112290--8112387 Score: 126
Period size: 50 Copynumber: 2.0 Consensus size: 50
8112280 CAACTTGAAA
* * *
8112290 GGTATAGGATTTGCATCTGTAGCTTCAATCTG-CCCTTCTATAGCTTTAGG
1 GGTATAAGACTTGCATCTGTAGCTTCAATCTGACTC-TCTATAGCTTTAGG
* * *
8112340 GGTATAAGACTTGCTTTTGTAGCTTCAATTTGACTCTCTATAGCTTTA
1 GGTATAAGACTTGCATCTGTAGCTTCAATCTGACTCTCTATAGCTTTA
8112388 CGAGTACAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 39 0.95
51 2 0.05
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.41
Consensus pattern (50 bp):
GGTATAAGACTTGCATCTGTAGCTTCAATCTGACTCTCTATAGCTTTAGG
Found at i:8113801 original size:14 final size:14
Alignment explanation
Indices: 8113782--8113811 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8113772 GCCTCATCTA
8113782 AATTTACTTCTGAT
1 AATTTACTTCTGAT
*
8113796 AATTTACTTTTGAT
1 AATTTACTTCTGAT
8113810 AA
1 AA
8113812 GACTCGAAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (14 bp):
AATTTACTTCTGAT
Found at i:8117491 original size:26 final size:26
Alignment explanation
Indices: 8117448--8117500 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8117438 TTCTGGGCGT
*
8117448 AATTCTGGACACGTTCATGCAGCGAC
1 AATTCTGGACACGCTCATGCAGCGAC
* *
8117474 AATTCTGTACATGCTCATGCAGCGAC
1 AATTCTGGACACGCTCATGCAGCGAC
8117500 A
1 A
8117501 TTCCTGGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
AATTCTGGACACGCTCATGCAGCGAC
Found at i:8117550 original size:37 final size:38
Alignment explanation
Indices: 8117490--8117581 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 38
8117480 GTACATGCTC
* *
8117490 ATGCAGCGACA-TTCCTGGGTGTAA-TTGAAGAATACTT
1 ATGCAGCGAAAGTT-CTGGATGTAATTTGAAGAATACTT
* *
8117527 ATGCAGCGATAGTTCTGGATGTAATTTGAAGAATATTT
1 ATGCAGCGAAAGTTCTGGATGTAATTTGAAGAATACTT
8117565 ATGCAGCGAAAG-TCTGG
1 ATGCAGCGAAAGTTCTGG
8117582 GGTGCATTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
37 24 0.49
38 25 0.51
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (38 bp):
ATGCAGCGAAAGTTCTGGATGTAATTTGAAGAATACTT
Found at i:8117652 original size:36 final size:37
Alignment explanation
Indices: 8117610--8117690 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 37
8117600 TCCTGCGGTA
* *
8117610 ACAGTTTTGGGTGCAATCT-GAAGTGCTCATGCAACG
1 ACAGTTTTGGGCGCAATCTAGAAGTGCTCATACAACG
* *
8117646 ACAGTTTTGGGCGCAATCTAGAAGTGGTCATACAGCG
1 ACAGTTTTGGGCGCAATCTAGAAGTGCTCATACAACG
8117683 ACATGTTT
1 ACA-GTTT
8117691 AGCTCAATTC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
36 18 0.46
37 17 0.44
38 4 0.10
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (37 bp):
ACAGTTTTGGGCGCAATCTAGAAGTGCTCATACAACG
Found at i:8119556 original size:12 final size:12
Alignment explanation
Indices: 8119539--8119563 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8119529 TTTGTCTCGA
8119539 CATCTTTTTCTT
1 CATCTTTTTCTT
8119551 CATCTTTTTCTT
1 CATCTTTTTCTT
8119563 C
1 C
8119564 CTCCACACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.00, T:0.64
Consensus pattern (12 bp):
CATCTTTTTCTT
Found at i:8121453 original size:22 final size:22
Alignment explanation
Indices: 8121402--8121540 Score: 152
Period size: 22 Copynumber: 6.0 Consensus size: 22
8121392 CTCACTGATT
*
8121402 AGCACTGTGTGTGCTTCTATTTCCC
1 AGCACTGTGTGTGCTTCT-GTT--C
8121427 AAGCACTGTGTGTGCTTCTGTTC
1 -AGCACTGTGTGTGCTTCTGTTC
* *
8121450 AGCATTGTGTGTGCTTCTATTC
1 AGCACTGTGTGTGCTTCTGTTC
*
8121472 AGCACTGTGTGTGCTTCAGTTTCCCC
1 AGCACTGTGTGTGCTTCTG-TT---C
*
8121498 AGCACTGTGTGTGCTTCTGCTC
1 AGCACTGTGTGTGCTTCTGTTC
*
8121520 AGCACTGTGTATGCTTCTGTT
1 AGCACTGTGTGTGCTTCTGTT
8121541 TCCCCAGCAG
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
22 56 0.57
23 3 0.03
25 3 0.03
26 37 0.37
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.40
Consensus pattern (22 bp):
AGCACTGTGTGTGCTTCTGTTC
Found at i:8121515 original size:70 final size:70
Alignment explanation
Indices: 8121402--8121537 Score: 220
Period size: 70 Copynumber: 1.9 Consensus size: 70
8121392 CTCACTGATT
* * *
8121402 AGCACTGTGTGTGCTTCTATTTCCCAAGCACTGTGTGTGCTTCTGTTCAGCATTGTGTGTGCTTC
1 AGCACTGTGTGTGCTTCTATTTCCCAAGCACTGTGTGTGCTTCTGCTCAGCACTGTGTATGCTTC
8121467 TATTC
66 TATTC
*
8121472 AGCACTGTGTGTGCTTC-AGTTTCCCCAGCACTGTGTGTGCTTCTGCTCAGCACTGTGTATGCTT
1 AGCACTGTGTGTGCTTCTA-TTTCCCAAGCACTGTGTGTGCTTCTGCTCAGCACTGTGTATGCTT
8121536 CT
65 CT
8121538 GTTTCCCCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
69 1 0.02
70 60 0.98
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (70 bp):
AGCACTGTGTGTGCTTCTATTTCCCAAGCACTGTGTGTGCTTCTGCTCAGCACTGTGTATGCTTC
TATTC
Found at i:8121544 original size:48 final size:48
Alignment explanation
Indices: 8121402--8121549 Score: 178
Period size: 48 Copynumber: 3.1 Consensus size: 48
8121392 CTCACTGATT
*
8121402 AGCACTGTGTGTGCTTCTATTTCCCAAGCACTGTGTGTGCTTCTG-TT---C
1 AGCACTGTGTGTGCTTCTA---CTC-AGCACTGTGTGTGCTTCTGTTTCCCC
* * *
8121450 AGCATTGTGTGTGCTTCTATTCAGCACTGTGTGTGCTTCAGTTTCCCC
1 AGCACTGTGTGTGCTTCTACTCAGCACTGTGTGTGCTTCTGTTTCCCC
* *
8121498 AGCACTGTGTGTGCTTCTGCTCAGCACTGTGTATGCTTCTGTTTCCCC
1 AGCACTGTGTGTGCTTCTACTCAGCACTGTGTGTGCTTCTGTTTCCCC
8121546 AGCA
1 AGCA
8121550 GTTATGTACT
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
44 18 0.21
45 3 0.03
48 66 0.76
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.38
Consensus pattern (48 bp):
AGCACTGTGTGTGCTTCTACTCAGCACTGTGTGTGCTTCTGTTTCCCC
Found at i:8121581 original size:21 final size:21
Alignment explanation
Indices: 8121555--8121609 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
8121545 CAGCAGTTAT
8121555 GTACTTCTGTTAAGTACTTTG
1 GTACTTCTGTTAAGTACTTTG
8121576 GTACTTCTAG-TAAGTACTTTG
1 GTACTTCT-GTTAAGTACTTTG
8121597 GTACTTTCTGTTA
1 GTAC-TTCTGTTA
8121610 GTTCCGTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 24 0.77
22 7 0.23
ACGTcount: A:0.20, C:0.15, G:0.18, T:0.47
Consensus pattern (21 bp):
GTACTTCTGTTAAGTACTTTG
Found at i:8124669 original size:26 final size:26
Alignment explanation
Indices: 8124640--8124689 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
8124630 GTCAGATGTG
8124640 GTGACAATTCTGGACACGTTCATGCA
1 GTGACAATTCTGGACACGTTCATGCA
* *
8124666 GTGACAATTCTGTACATGTTCATG
1 GTGACAATTCTGGACACGTTCATG
8124690 TAATGACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (26 bp):
GTGACAATTCTGGACACGTTCATGCA
Found at i:8124696 original size:26 final size:26
Alignment explanation
Indices: 8124641--8124697 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
8124631 TCAGATGTGG
*
8124641 TGACAATTCTGGACACGTTCATGCAG
1 TGACAATTCTGGACACGTTCATGCAA
* * *
8124667 TGACAATTCTGTACATGTTCATGTAA
1 TGACAATTCTGGACACGTTCATGCAA
8124693 TGACA
1 TGACA
8124698 TTATTGGGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
TGACAATTCTGGACACGTTCATGCAA
Found at i:8124850 original size:37 final size:37
Alignment explanation
Indices: 8124800--8124875 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
8124790 GAAATGTTCC
* * **
8124800 TGCGGTGATAGTTTTGGGTGCAATCTAGAAGTGCTCA
1 TGCGATGACAGTTTTGGGCACAATCTAGAAGTGCTCA
8124837 TGCGATGACAGTTTTGGGCACAATCTAGAAGTGCTCA
1 TGCGATGACAGTTTTGGGCACAATCTAGAAGTGCTCA
8124874 TG
1 TG
8124876 TAGCGACATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (37 bp):
TGCGATGACAGTTTTGGGCACAATCTAGAAGTGCTCA
Found at i:8124891 original size:37 final size:37
Alignment explanation
Indices: 8124809--8124888 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 37
8124799 CTGCGGTGAT
** * *
8124809 AGTTTTGGGTGCAATCTAGAAGTGCTCATGCGATGAC
1 AGTTTTGGGCACAATCTAGAAGTGCTCATGAGACGAC
8124846 AGTTTTGGGCACAATCTAGAAGTGCTCATGTAG-CGAC
1 AGTTTTGGGCACAATCTAGAAGTGCTCATG-AGACGAC
8124883 ATGTTT
1 A-GTTT
8124889 GGGTGCAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 32 0.86
38 5 0.14
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (37 bp):
AGTTTTGGGCACAATCTAGAAGTGCTCATGAGACGAC
Found at i:8129317 original size:12 final size:13
Alignment explanation
Indices: 8129300--8129338 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
8129290 ATTTTGGGTT
8129300 TATTTTATTT-TA
1 TATTTTATTTATA
*
8129312 TATTTTATTTATT
1 TATTTTATTTATA
8129325 TATTTATATTTATA
1 TATTT-TATTTATA
8129339 GAATAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 10 0.43
13 6 0.26
14 7 0.30
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTTTATTTATA
Found at i:8139279 original size:21 final size:20
Alignment explanation
Indices: 8139230--8139282 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
8139220 TCACTCATCA
8139230 CATTTT-TTCTTACTCTTTT
1 CATTTTGTTCTTACTCTTTT
* *
8139249 CTTTTGTGTTTTTACTCATTTT
1 CATTT-TGTTCTTACTC-TTTT
8139271 CATTTTGTTCTT
1 CATTTTGTTCTT
8139283 TTCACTTGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 4 0.15
20 1 0.04
21 14 0.52
22 8 0.30
ACGTcount: A:0.09, C:0.17, G:0.06, T:0.68
Consensus pattern (20 bp):
CATTTTGTTCTTACTCTTTT
Found at i:8153669 original size:12 final size:11
Alignment explanation
Indices: 8153620--8153669 Score: 59
Period size: 10 Copynumber: 4.5 Consensus size: 11
8153610 TTATTTTGGG
8153620 TTTAT-TTTAT
1 TTTATATTTAT
8153630 TTTATA-TTAT
1 TTTATATTTAT
*
8153640 ATTATATTTAT
1 TTTATATTTAT
8153651 TTATATATTTAT
1 TT-TATATTTAT
8153663 ATTTATA
1 -TTTATA
8153670 GAATAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 14 0.41
11 5 0.15
12 13 0.38
13 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATATTTAT
Found at i:8153762 original size:9 final size:9
Alignment explanation
Indices: 8153748--8153775 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
8153738 TATTTTCTTC
8153748 TTTATTTGT
1 TTTATTTGT
8153757 TTTATTTGT
1 TTTATTTGT
8153766 TTTATTTGT
1 TTTATTTGT
8153775 T
1 T
8153776 GGGCCCGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.79
Consensus pattern (9 bp):
TTTATTTGT
Found at i:8158987 original size:27 final size:27
Alignment explanation
Indices: 8158956--8159038 Score: 87
Period size: 27 Copynumber: 2.9 Consensus size: 27
8158946 AATGGTCAAA
*
8158956 GTCAAAGTCAACTATCAAAGTCAATAG
1 GTCAAAGTCAACTGTCAAAGTCAATAG
8158983 GTCAACGAGGTCAACTGGTCAAAGTCAATAG
1 GTCAA--A-GTCAACT-GTCAAAGTCAATAG
* *
8159014 ATC-AAGTCAACGGGTCAAAGTCAAT
1 GTCAAAGTCAAC-TGTCAAAGTCAAT
8159039 GGGTTGGGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
27 23 0.48
28 1 0.02
29 1 0.02
30 8 0.17
31 15 0.31
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
GTCAAAGTCAACTGTCAAAGTCAATAG
Found at i:8159042 original size:14 final size:14
Alignment explanation
Indices: 8158956--8159038 Score: 66
Period size: 13 Copynumber: 5.9 Consensus size: 14
8158946 AATGGTCAAA
8158956 GTCAAAGTCAACTA-
1 GTCAAAGTCAA-TAG
8158970 -TCAAAGTCAATAG
1 GTCAAAGTCAATAG
8158983 GTCAACGAGGTCAACT-G
1 GTCAA--A-GTCAA-TAG
8159000 GTCAAAGTCAATAG
1 GTCAAAGTCAATAG
* **
8159014 ATC-AAGTCAACGG
1 GTCAAAGTCAATAG
8159027 GTCAAAGTCAAT
1 GTCAAAGTCAAT
8159039 GGGTTGGGTC
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
12 2 0.04
13 21 0.38
14 19 0.34
15 1 0.02
16 1 0.02
17 11 0.20
18 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.20
Consensus pattern (14 bp):
GTCAAAGTCAATAG
Found at i:8159098 original size:22 final size:22
Alignment explanation
Indices: 8159044--8159106 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
8159034 TCAATGGGTT
*
8159044 GGGTCAACGGATCGGTCAACTC
1 GGGTCAACGGGTCGGTCAACTC
*
8159066 GGGTCAACGGGTCGAGTCAAGTC
1 GGGTCAACGGGTCG-GTCAACTC
8159089 -GGTCAACGGG-CGGGTCAA
1 GGGTCAACGGGTC-GGTCAA
8159107 ACCAAATTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
21 6 0.16
22 24 0.65
23 7 0.19
ACGTcount: A:0.22, C:0.24, G:0.38, T:0.16
Consensus pattern (22 bp):
GGGTCAACGGGTCGGTCAACTC
Found at i:8161167 original size:3 final size:3
Alignment explanation
Indices: 8161159--8161195 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
8161149 CACAAGTTTT
8161159 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8161196 AATATGTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8165211 original size:13 final size:12
Alignment explanation
Indices: 8165193--8165273 Score: 56
Period size: 13 Copynumber: 6.2 Consensus size: 12
8165183 TTGACAAAGA
8165193 AAAGTCAATAGTC
1 AAAGTCAA-AGTC
8165206 AAAGTCAAAGTC
1 AAAGTCAAAGTC
* *
8165218 AATGGTTAAAGTC
1 AA-AGTCAAAGTC
*
8165231 AAAGTTAACTA-TC
1 AAAGTCAA--AGTC
8165244 AAAGTCAATAGGTC
1 AAAGTCAA-A-GTC
8165258 AACGAGTCAAAGTC
1 AA--AGTCAAAGTC
8165272 AA
1 AA
8165274 TGGGTTAGGT
Statistics
Matches: 57, Mismatches: 4, Indels: 13
0.77 0.05 0.18
Matches are distributed among these distances:
12 13 0.23
13 27 0.47
14 10 0.18
15 1 0.02
16 6 0.11
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (12 bp):
AAAGTCAAAGTC
Found at i:8165213 original size:6 final size:6
Alignment explanation
Indices: 8165193--8165273 Score: 56
Period size: 6 Copynumber: 12.3 Consensus size: 6
8165183 TTGACAAAGA
* * *
8165193 AAAGTC AATAGTC AAAGTC AAAGTC AATGGTT AAAGTC AAAGTT AACTA-TC
1 AAAGTC AA-AGTC AAAGTC AAAGTC AA-AGTC AAAGTC AAAGTC AA--AGTC
8165244 AAAGTC AATAGGTC AACGAGTC AAAGTC AA
1 AAAGTC AA-A-GTC AA--AGTC AAAGTC AA
8165274 TGGGTTAGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
5 1 0.02
6 33 0.55
7 14 0.23
8 11 0.18
9 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (6 bp):
AAAGTC
Found at i:8165217 original size:19 final size:20
Alignment explanation
Indices: 8165193--8165273 Score: 87
Period size: 19 Copynumber: 4.1 Consensus size: 20
8165183 TTGACAAAGA
8165193 AAAGTCAA-TAGTCAAAGTC
1 AAAGTCAACTAGTCAAAGTC
* *
8165212 AAAGTCAA-TGGTTAAAGTC
1 AAAGTCAACTAGTCAAAGTC
*
8165231 AAAGTTAACTA-TCAAAGTC
1 AAAGTCAACTAGTCAAAGTC
*
8165250 AATAGGTCAACGAGTCAAAGTC
1 AA-A-GTCAACTAGTCAAAGTC
8165272 AA
1 AA
8165274 TGGGTTAGGT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
19 33 0.65
20 2 0.04
21 6 0.12
22 10 0.20
ACGTcount: A:0.46, C:0.15, G:0.17, T:0.22
Consensus pattern (20 bp):
AAAGTCAACTAGTCAAAGTC
Found at i:8173024 original size:17 final size:17
Alignment explanation
Indices: 8173002--8173034 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8172992 TTTGAAGGCA
8173002 TAAAATA-AAAGATAAAC
1 TAAAATAGAAA-ATAAAC
8173019 TAAAATAGAAAATAAA
1 TAAAATAGAAAATAAA
8173035 AGCAAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (17 bp):
TAAAATAGAAAATAAAC
Found at i:8179239 original size:36 final size:36
Alignment explanation
Indices: 8179193--8179336 Score: 209
Period size: 36 Copynumber: 4.0 Consensus size: 36
8179183 GACTATTGTA
* *
8179193 AAAGTGAATATGTGAGTATGTTATTCATGTCATGAG
1 AAAGTAAATATGTGAGTATGTTATTCATGCCATGAG
* *
8179229 AAAGTAAATATGTGGGTATGTTATTCATGCCATGTG
1 AAAGTAAATATGTGAGTATGTTATTCATGCCATGAG
* *
8179265 ACAGTAAATATGTTG-GTATGTTATTCATGCCATGTG
1 AAAGTAAATATG-TGAGTATGTTATTCATGCCATGAG
*
8179301 ACAGTAAATATGTGAGTATGTTATTCATGCCATGAG
1 AAAGTAAATATGTGAGTATGTTATTCATGCCATGAG
8179337 GCAAAAAATA
Statistics
Matches: 100, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
35 2 0.02
36 96 0.96
37 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (36 bp):
AAAGTAAATATGTGAGTATGTTATTCATGCCATGAG
Found at i:8179820 original size:23 final size:23
Alignment explanation
Indices: 8179787--8179884 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
8179777 ATGCATTACA
* *
8179787 TGCTTAGATATTAAGGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
8179810 TGCTTAAATATTAATGTGATCTT-
1 TGCTTAAATATTAATGTGAT-TTG
*
8179833 TGCTTAAATATTAATGTGATTTA
1 TGCTTAAATATTAATGTGATTTG
*
8179856 TGCTTTAATATTAATGTGATTTG
1 TGCTTAAATATTAATGTGATTTG
8179879 TGCTTA
1 TGCTTA
8179885 GACCTATGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
22 2 0.03
23 64 0.94
24 2 0.03
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.48
Consensus pattern (23 bp):
TGCTTAAATATTAATGTGATTTG
Found at i:8180623 original size:22 final size:23
Alignment explanation
Indices: 8180553--8180623 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
8180543 GGACACCTCT
* *
8180553 ATTTGTGCTTAAATATTAATGTG
1 ATTTATGCTTAAATATTAATATG
*
8180576 ATTTATGCTTAAATGTTAATATG
1 ATTTATGCTTAAATATTAATATG
**
8180599 ATTTATGCTT-AATATTCGTATG
1 ATTTATGCTTAAATATTAATATG
8180621 ATT
1 ATT
8180624 ATTGTGTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 12 0.29
23 30 0.71
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (23 bp):
ATTTATGCTTAAATATTAATATG
Found at i:8181215 original size:20 final size:20
Alignment explanation
Indices: 8181172--8181215 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8181162 GAAGTTAAGT
* *
8181172 ATAATTAACATGTTTTATTT
1 ATAATTAACATATTTTATTC
8181192 ATAATTAACATATGTTT-TTC
1 ATAATTAACATAT-TTTATTC
8181212 ATAA
1 ATAA
8181216 AACTAGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.50
Consensus pattern (20 bp):
ATAATTAACATATTTTATTC
Found at i:8182444 original size:16 final size:17
Alignment explanation
Indices: 8182402--8182452 Score: 68
Period size: 16 Copynumber: 3.0 Consensus size: 17
8182392 GAAAAATTAC
*
8182402 ATAATTACATAATACAA
1 ATAATTATATAATACAA
8182419 ATATATTATATAATA-AA
1 ATA-ATTATATAATACAA
*
8182436 CTAATTATATAATACAA
1 ATAATTATATAATACAA
8182453 TGATTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 11 0.37
17 9 0.30
18 10 0.33
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATTATATAATACAA
Found at i:8204618 original size:80 final size:79
Alignment explanation
Indices: 8204504--8204664 Score: 286
Period size: 80 Copynumber: 2.0 Consensus size: 79
8204494 TCACAATAGG
* *
8204504 TCATTTTTGGGCTATTCTGCTGTCCTAAGTGAACAATTGTTGTGGTCGGTTCCTAACGAAAGGTT
1 TCATTTTTGGGCTATCCTACTGTCCTAAGTGAACAATTGTTGTGGTCGGTTCCTAACGAAAGGTT
8204569 GTATGTAGACCGCT
66 GTATGTAGACCGCT
*
8204583 TCATTTTTGGGCTATCCTAATTGTCCTAAGTGAACAATTGTTGTGGTCGGTTCCTAACGAAAGGT
1 TCATTTTTGGGCTATCCT-ACTGTCCTAAGTGAACAATTGTTGTGGTCGGTTCCTAACGAAAGGT
8204648 TGTATGTAGACCGCT
65 TGTATGTAGACCGCT
8204663 TC
1 TC
8204665 TCGCGGATGG
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 17 0.22
80 61 0.78
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (79 bp):
TCATTTTTGGGCTATCCTACTGTCCTAAGTGAACAATTGTTGTGGTCGGTTCCTAACGAAAGGTT
GTATGTAGACCGCT
Found at i:8205841 original size:21 final size:21
Alignment explanation
Indices: 8205799--8205841 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
8205789 AAAATTATTT
*
8205799 AATAATTTTATTATTTCAAAA
1 AATAATTTTATAATTTCAAAA
*
8205820 AATAATTTTAATAATTTTAAAA
1 AATAATTTT-ATAATTTCAAAA
8205842 TCATTTGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
AATAATTTTATAATTTCAAAA
Found at i:8211854 original size:23 final size:22
Alignment explanation
Indices: 8211826--8211951 Score: 126
Period size: 23 Copynumber: 5.5 Consensus size: 22
8211816 ACATTAGTGC
*
8211826 GCTTACTGTTCAGCACTATGTGT
1 GCTTACTGTT-TGCACTATGTGT
*
8211849 GCTTACTGATTTGCACTATATGT
1 GCTTACTG-TTTGCACTATGTGT
* *
8211872 GCTTACTAATTTGCACTGTGTGT
1 GCTTACT-GTTTGCACTATGTGT
* *
8211895 GCTTACTATTTTGCACTACGTGT
1 GCTTACT-GTTTGCACTATGTGT
* * *
8211918 GCCTACTGATTTGCATTGTGTGT
1 GCTTACTG-TTTGCACTATGTGT
8211941 GCTTACTGTTT
1 GCTTACTGTTT
8211952 CCCCAACACT
Statistics
Matches: 86, Mismatches: 14, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
22 3 0.03
23 81 0.94
24 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.21, T:0.44
Consensus pattern (22 bp):
GCTTACTGTTTGCACTATGTGT
Found at i:8211894 original size:46 final size:47
Alignment explanation
Indices: 8211838--8211948 Score: 154
Period size: 46 Copynumber: 2.4 Consensus size: 47
8211828 TTACTGTTCA
* * *
8211838 GCACTATGTGTGCTTACTGA-TTTGCACTATATGTGCTTACTAATTT
1 GCACTGTGTGTGCTTACTGATTTTGCACTACATGTGCCTACTAATTT
* *
8211884 GCACTGTGTGTGCTTACT-ATTTTGCACTACGTGTGCCTACTGATTT
1 GCACTGTGTGTGCTTACTGATTTTGCACTACATGTGCCTACTAATTT
*
8211930 GCATTGTGTGTGCTTACTG
1 GCACTGTGTGTGCTTACTG
8211949 TTTCCCCAAC
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.02
46 56 0.98
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (47 bp):
GCACTGTGTGTGCTTACTGATTTTGCACTACATGTGCCTACTAATTT
Found at i:8217622 original size:23 final size:23
Alignment explanation
Indices: 8217592--8217670 Score: 113
Period size: 23 Copynumber: 3.4 Consensus size: 23
8217582 TGCGTGCTTA
* * *
8217592 GTGCTTACTAATTCGCACTATAT
1 GTGCTTACTGATTTGCACTATGT
8217615 GTGCTTACTGATTTGCACTATGT
1 GTGCTTACTGATTTGCACTATGT
* *
8217638 GTGCTTACTGTTTTGCACTGTGT
1 GTGCTTACTGATTTGCACTATGT
8217661 GTGCTTACTG
1 GTGCTTACTG
8217671 TTTCCCCAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (23 bp):
GTGCTTACTGATTTGCACTATGT
Found at i:8222505 original size:28 final size:28
Alignment explanation
Indices: 8222473--8222534 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
8222463 GGCTTCAACG
8222473 TAAGATCATCCTGAAAGACTTCCACACA
1 TAAGATCATCCTGAAAGACTTCCACACA
* ** *
8222501 TAAGATCATTCTGACGGACTTCCACATA
1 TAAGATCATCCTGAAAGACTTCCACACA
8222529 TAAGAT
1 TAAGAT
8222535 TTTCTTTATG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (28 bp):
TAAGATCATCCTGAAAGACTTCCACACA
Found at i:8231873 original size:27 final size:27
Alignment explanation
Indices: 8231808--8231873 Score: 62
Period size: 27 Copynumber: 2.4 Consensus size: 27
8231798 ATTTTGGTTA
* * * *
8231808 TGGTAAAGCTGGTTTTTGTTCTAGTTC
1 TGGTAAAGTTAGTTTTGGTTCTAGCTC
* *
8231835 TGGTGATA-TTAGTTTTGGTTCTGGCTC
1 TGGT-AAAGTTAGTTTTGGTTCTAGCTC
8231862 TGGTAAAGTTAG
1 TGGTAAAGTTAG
8231874 AGTTTCAACT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
26 2 0.07
27 26 0.87
28 2 0.07
ACGTcount: A:0.17, C:0.09, G:0.29, T:0.45
Consensus pattern (27 bp):
TGGTAAAGTTAGTTTTGGTTCTAGCTC
Found at i:8235482 original size:10 final size:10
Alignment explanation
Indices: 8235467--8235500 Score: 54
Period size: 9 Copynumber: 3.6 Consensus size: 10
8235457 AATATAATTT
8235467 TTTTTTCTTC
1 TTTTTTCTTC
8235477 TTTTTTCTTC
1 TTTTTTCTTC
8235487 -TTTTTCTT-
1 TTTTTTCTTC
8235495 TTTTTT
1 TTTTTT
8235501 TTCAAGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 13 0.57
10 10 0.43
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTCTTC
Found at i:8235501 original size:10 final size:10
Alignment explanation
Indices: 8235464--8235501 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
8235454 GTAAATATAA
8235464 TTTTTTTTTC
1 TTTTTTTTTC
*
8235474 TTCTTTTTTC
1 TTTTTTTTTC
*
8235484 -TTCTTTTTC
1 TTTTTTTTTC
8235493 TTTTTTTTT
1 TTTTTTTTT
8235502 TCAAGTGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:8241330 original size:12 final size:12
Alignment explanation
Indices: 8241315--8241339 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8241305 ATTAAAAAAG
8241315 TAATAGCATTCA
1 TAATAGCATTCA
8241327 TAATAGCATTCA
1 TAATAGCATTCA
8241339 T
1 T
8241340 CATGATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (12 bp):
TAATAGCATTCA
Found at i:8256007 original size:4 final size:4
Alignment explanation
Indices: 8255998--8256022 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8255988 ACGCTCATGA
8255998 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
8256023 GTGAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:8260259 original size:23 final size:22
Alignment explanation
Indices: 8260200--8260290 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 22
8260190 GTCAGGTACA
8260200 TTTTTCTTATCTTTT-TCTTCTTC
1 TTTTT-TTA-CTTTTCTCTTCTTC
*
8260223 TTTTTTTCAATTTTCTCTTCTTC
1 TTTTTTT-ACTTTTCTCTTCTTC
* **
8260246 TTTTTTTACTTTTTCTTTTCGAC
1 TTTTTTTAC-TTTTCTCTTCTTC
*
8260269 TTTTTTCTACTTTTCTTTTCTT
1 TTTTTT-TACTTTTCTCTTCTT
8260291 TTCTTTCAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
22 7 0.12
23 47 0.82
24 3 0.05
ACGTcount: A:0.07, C:0.20, G:0.01, T:0.73
Consensus pattern (22 bp):
TTTTTTTACTTTTCTCTTCTTC
Found at i:8267496 original size:15 final size:16
Alignment explanation
Indices: 8267476--8267508 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8267466 TGACACGACA
8267476 GATCTTT-TGGTGAAG
1 GATCTTTATGGTGAAG
*
8267491 GATCTTTATGTTGAAG
1 GATCTTTATGGTGAAG
8267507 GA
1 GA
8267509 GCCACATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.24, C:0.06, G:0.30, T:0.39
Consensus pattern (16 bp):
GATCTTTATGGTGAAG
Found at i:8268276 original size:15 final size:16
Alignment explanation
Indices: 8268256--8268288 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8268246 TGACACGACA
8268256 GATCTTT-TGGTGAAG
1 GATCTTTGTGGTGAAG
*
8268271 GATCTTTGTGTTGAAG
1 GATCTTTGTGGTGAAG
8268287 GA
1 GA
8268289 GCCACATGGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.39
Consensus pattern (16 bp):
GATCTTTGTGGTGAAG
Found at i:8270511 original size:16 final size:16
Alignment explanation
Indices: 8270490--8270521 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8270480 ATTTTTGATG
*
8270490 ATGTTAAAGGACTAAA
1 ATGTTAAAGGAATAAA
8270506 ATGTTAAAGGAATAAA
1 ATGTTAAAGGAATAAA
8270522 TTTGTAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.03, G:0.19, T:0.25
Consensus pattern (16 bp):
ATGTTAAAGGAATAAA
Found at i:8271840 original size:52 final size:52
Alignment explanation
Indices: 8271498--8271832 Score: 607
Period size: 52 Copynumber: 6.4 Consensus size: 52
8271488 TAAATGCAAA
8271498 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
8271550 AGGTCCGATGACTATGTGTCATCATGAGTATATGAATCCATTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* *
8271602 AGGTTCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTTCGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
8271654 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
8271706 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
8271758 AGGTTCGATGACTATGTGTCATCGTGAGTATGTGAATCCTTTTCGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
8271810 AGGTCCGATGACTATGTGTCATC
1 AGGTCCGATGACTATGTGTCATC
8271833 CTAAGTATTA
Statistics
Matches: 271, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 271 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:8273449 original size:17 final size:17
Alignment explanation
Indices: 8273393--8273470 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 17
8273383 TATTAGTAAG
* **
8273393 CATTGTCATCGCATTCC
1 CATTGTCATTGCATTTA
* *
8273410 CATTATCATTACATTTTA
1 CATTGTCATTGCA-TTTA
* *
8273428 -GTTGTTATTGCATTTA
1 CATTGTCATTGCATTTA
*
8273444 CATTGTCATTGCATTTC
1 CATTGTCATTGCATTTA
8273461 CATTTGTCAT
1 CA-TTGTCAT
8273471 GGTACTTTAG
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
16 4 0.09
17 33 0.72
18 9 0.20
ACGTcount: A:0.22, C:0.21, G:0.10, T:0.47
Consensus pattern (17 bp):
CATTGTCATTGCATTTA
Found at i:8283259 original size:21 final size:21
Alignment explanation
Indices: 8283226--8283278 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
8283216 AACGGAACTG
*
8283226 ACAGAAAGGACCAAAGTACTT-
1 ACAG-AAGTACCAAAGTACTTA
8283247 ACTAGAAGTACCAAAGTACTTA
1 AC-AGAAGTACCAAAGTACTTA
8283269 ACAGAAGTAC
1 ACAGAAGTAC
8283279 ATAACTACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.47, C:0.19, G:0.17, T:0.17
Consensus pattern (21 bp):
ACAGAAGTACCAAAGTACTTA
Found at i:8283287 original size:21 final size:21
Alignment explanation
Indices: 8283235--8283287 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
8283225 GACAGAAAGG
*
8283235 ACCAAAGTACTTACTAGAAGT
1 ACCAAACTACTTACTAGAAGT
*
8283256 ACCAAAGTACTTAAC-AGAAGT
1 ACCAAACTACTT-ACTAGAAGT
8283277 A-CATAACTACT
1 ACCA-AACTACT
8283288 GGGAAAACAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 2 0.07
21 25 0.86
22 2 0.07
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.23
Consensus pattern (21 bp):
ACCAAACTACTTACTAGAAGT
Found at i:8283321 original size:26 final size:26
Alignment explanation
Indices: 8283286--8283340 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
8283276 TACATAACTA
*
8283286 CTGGGAAAACAGAAGCACACACAGTG
1 CTGGGAAAACAGAAGCACACACAATG
* *
8283312 CTGGGGAAACAGAAGTACACACAATG
1 CTGGGAAAACAGAAGCACACACAATG
8283338 CTG
1 CTG
8283341 AACAGTAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.22, G:0.27, T:0.11
Consensus pattern (26 bp):
CTGGGAAAACAGAAGCACACACAATG
Found at i:8295056 original size:12 final size:12
Alignment explanation
Indices: 8295041--8295083 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
8295031 AAGGAGCAAT
*
8295041 AGAAGAAAAGAA
1 AGAAGAAAAGGA
8295053 AGAAGAAAAGGA
1 AGAAGAAAAGGA
* *
8295065 AGAGGAGAAGGA
1 AGAAGAAAAGGA
8295077 AGAAGAA
1 AGAAGAA
8295084 GAAAGTATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (12 bp):
AGAAGAAAAGGA
Found at i:8295380 original size:13 final size:13
Alignment explanation
Indices: 8295359--8295400 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
8295349 GGCGCAAACG
8295359 GAAGG-CAAAGAA
1 GAAGGCCAAAGAA
8295371 GAAGGCCAAAG-A
1 GAAGGCCAAAGAA
*
8295383 GGAGCGCCAAAGAA
1 GAAG-GCCAAAGAA
8295397 GAAG
1 GAAG
8295401 AAGACCAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 9 0.36
13 12 0.48
14 4 0.16
ACGTcount: A:0.50, C:0.14, G:0.36, T:0.00
Consensus pattern (13 bp):
GAAGGCCAAAGAA
Found at i:8295504 original size:19 final size:21
Alignment explanation
Indices: 8295469--8295521 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 21
8295459 GTTAGTTGCA
8295469 TGCATTTATTTTAATTGTCAT
1 TGCATTTATTTTAATTGTCAT
*
8295490 TGCATTT-TTTT-ATTGTCTT
1 TGCATTTATTTTAATTGTCAT
8295509 TGCACTTTATTTT
1 TGCA-TTTATTTT
8295522 TTTTAGCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.38
20 7 0.24
21 11 0.38
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.62
Consensus pattern (21 bp):
TGCATTTATTTTAATTGTCAT
Found at i:8299960 original size:12 final size:13
Alignment explanation
Indices: 8299932--8299969 Score: 53
Period size: 12 Copynumber: 3.0 Consensus size: 13
8299922 AAAAGGGAAG
8299932 AAATTAAAATATAA
1 AAATT-AAATATAA
8299946 AAATTAAAT-TAA
1 AAATTAAATATAA
8299958 AAATTAAA-ATAA
1 AAATTAAATATAA
8299970 TAAAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 14 0.61
13 4 0.17
14 5 0.22
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAATTAAATATAA
Found at i:8299984 original size:26 final size:25
Alignment explanation
Indices: 8299932--8299986 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
8299922 AAAAGGGAAG
*
8299932 AAATTAAAATATAAAAATTAAATTAA
1 AAATTAAAATATAAAAA-TAAAATAA
8299958 AAATTAAAATAATAAAACA-AAAATAA
1 AAATTAAAAT-ATAAAA-ATAAAATAA
8299984 AAA
1 AAA
8299987 ATGGCTAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 19 0.73
27 6 0.23
28 1 0.04
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (25 bp):
AAATTAAAATATAAAAATAAAATAA
Found at i:8301553 original size:15 final size:15
Alignment explanation
Indices: 8301525--8301606 Score: 66
Period size: 15 Copynumber: 5.6 Consensus size: 15
8301515 AGTGATACCA
8301525 AACAA-AAATATAAT
1 AACAATAAATATAAT
*
8301539 AACAATAAATGTAAT
1 AACAATAAATATAAT
*
8301554 AATAAT-AATAATAAT
1 AACAATAAAT-ATAAT
* *
8301569 AATAATCATATATAAT
1 AACAAT-AAATATAAT
8301585 AA-AAT-AATAATAAT
1 AACAATAAAT-ATAAT
8301599 AA-AATAAA
1 AACAATAAA
8301607 GGAGGCCAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
13 2 0.04
14 18 0.32
15 28 0.49
16 7 0.12
17 2 0.04
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.28
Consensus pattern (15 bp):
AACAATAAATATAAT
Found at i:8301556 original size:3 final size:3
Alignment explanation
Indices: 8301550--8301605 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
8301540 ACAATAAATG
*
8301550 TAA TAA TAA TAA TAA TAA TAA TAA TCA TATA TAA TAA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
8301595 TAA TAA -AA TAA
1 TAA TAA TAA TAA
8301606 AGGAGGCCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
2 4 0.08
3 41 0.85
4 3 0.06
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8309219 original size:16 final size:15
Alignment explanation
Indices: 8309198--8309242 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
8309188 TACATTTATG
*
8309198 TTTATTTCTTTTTTGC
1 TTTATTTCTTTTTT-A
8309214 TTTATTTCTTCTTTTA
1 TTTATTTCTT-TTTTA
*
8309230 TTTGTTTCTTTTT
1 TTTATTTCTTTTT
8309243 AGATTCTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 3 0.12
16 19 0.73
17 4 0.15
ACGTcount: A:0.07, C:0.11, G:0.04, T:0.78
Consensus pattern (15 bp):
TTTATTTCTTTTTTA
Found at i:8311081 original size:21 final size:20
Alignment explanation
Indices: 8311033--8311082 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
8311023 GAACCTGAGG
8311033 AGAAGA-AAGAAAATGAAGA
1 AGAAGAGAAGAAAATGAAGA
8311052 AG-AGAAGAACGAAAATGAAGA
1 AGAAG-AGAA-GAAAATGAAGA
8311073 AGAAGAGAAG
1 AGAAGAGAAG
8311083 GAAGATGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 3 0.11
20 3 0.11
21 17 0.63
22 2 0.07
ACGTcount: A:0.64, C:0.02, G:0.30, T:0.04
Consensus pattern (20 bp):
AGAAGAGAAGAAAATGAAGA
Found at i:8311082 original size:24 final size:21
Alignment explanation
Indices: 8311032--8311075 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
8311022 GGAACCTGAG
8311032 GAGAAGAAAGAAAATGAAGAA
1 GAGAAGAAAGAAAATGAAGAA
*
8311053 GAGAAGAACGAAAATGAAGAA
1 GAGAAGAAAGAAAATGAAGAA
8311074 GA
1 GA
8311076 AGAGAAGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.64, C:0.02, G:0.30, T:0.05
Consensus pattern (21 bp):
GAGAAGAAAGAAAATGAAGAA
Found at i:8321059 original size:13 final size:13
Alignment explanation
Indices: 8321043--8321067 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8321033 TGAATCATCA
8321043 TCAGAAATCCATG
1 TCAGAAATCCATG
8321056 TCAGAAATCCAT
1 TCAGAAATCCAT
8321068 CCATCAGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (13 bp):
TCAGAAATCCATG
Found at i:8321325 original size:16 final size:16
Alignment explanation
Indices: 8321296--8321341 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8321286 ATAGTTTGCA
*
8321296 TGCATTTTTATTGTCAT
1 TGCATTTTT-TTGTCAC
*
8321313 TGCATTTTTTTGTCGC
1 TGCATTTTTTTGTCAC
*
8321329 TGCATTCTTTTGT
1 TGCATTTTTTTGT
8321342 TAACTTAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 17 0.65
17 9 0.35
ACGTcount: A:0.11, C:0.15, G:0.15, T:0.59
Consensus pattern (16 bp):
TGCATTTTTTTGTCAC
Found at i:8326221 original size:27 final size:27
Alignment explanation
Indices: 8326181--8326235 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
8326171 TTCTCCAACG
*
8326181 CCGGTGTGCGAGACCTTGTGGGGAACA
1 CCGGTGTGCAAGACCTTGTGGGGAACA
8326208 CCGGTGTGCAAGACCTTGTGGGGAACA
1 CCGGTGTGCAAGACCTTGTGGGGAACA
8326235 C
1 C
8326236 AGTCTCACAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.24, G:0.38, T:0.18
Consensus pattern (27 bp):
CCGGTGTGCAAGACCTTGTGGGGAACA
Found at i:8328393 original size:17 final size:17
Alignment explanation
Indices: 8328362--8328394 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8328352 TTGAATTAGG
8328362 TTGAGAAATTTATTTAA
1 TTGAGAAATTTATTTAA
8328379 TTGA-AAATTTAATTTA
1 TTGAGAAATTT-ATTTA
8328395 TATATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.48
Consensus pattern (17 bp):
TTGAGAAATTTATTTAA
Found at i:8330209 original size:30 final size:30
Alignment explanation
Indices: 8330175--8330248 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
8330165 ATTCTCGAGG
*
8330175 AATTTGGGGATCAAAATTGAAATTTTGGAA
1 AATTTGGGGATCAAAATCGAAATTTTGGAA
* **
8330205 AATTT-GGGATTAAAATCGAGCTTTTGGAA
1 AATTTGGGGATCAAAATCGAAATTTTGGAA
*
8330234 AATTTGAGG-TCAAAA
1 AATTTGGGGATCAAAA
8330249 ATGTGATTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 30 0.81
30 7 0.19
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.32
Consensus pattern (30 bp):
AATTTGGGGATCAAAATCGAAATTTTGGAA
Found at i:8330460 original size:30 final size:30
Alignment explanation
Indices: 8330303--8330745 Score: 334
Period size: 30 Copynumber: 14.8 Consensus size: 30
8330293 ATGTTCGGGG
* * *
8330303 CAAAATGGTAATTTTAGAGAAGTTT-GGGGT
1 CAAAAT-GTAATTTTGGAAAAGTTTAAGGGT
** *
8330333 -AAAATTGGGATTTTGGAGAAG-TT-AGGCGAT
1 CAAAA-TGTAATTTTGGAAAAGTTTAAGG-G-T
* * * *
8330363 CAAAATGTGATTTTGCAGAAG-ATATAGGGT
1 CAAAATGTAATTTTGGAAAAGTTTA-AGGGT
** * *
8330393 CAAAACATAATTTTGGAAAAGCTTGAGGGGT
1 CAAAATGTAATTTTGGAAAAG-TTTAAGGGT
* * * *
8330424 CCAAATGCAGTTTTGGAAAAATTTAAGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
*
8330454 CAAAATGTAATTTTGGAAAAGCTTAAGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
* *
8330484 TAAAATGTAATTTTGGAAACA-TTTAGGGGT
1 CAAAATGTAATTTTGGAAA-AGTTTAAGGGT
* * *
8330514 TAAAATGTAATTTTTGGAAAATTTTAGGGGT
1 CAAAATGTAA-TTTTGGAAAAGTTTAAGGGT
*
8330545 CAAAATGTAATTTTAGAAAAGTTTAAGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
*** * *
8330575 CAAAACAAAATTATGGAAAAGTTT-GGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
* ** *
8330604 TAAAATGTAATTTTGGAAAAAATTAGGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
* *
8330634 CAAAATATAATTTCGGAAAA-TTT-AGTGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAG-GGT
* * *
8330663 CAAAATGTAATTTTGGAAGAGTTCAGGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
* *
8330693 CAAAA-GTAATTTTAGAAAAGTTTGAGGGT
1 CAAAATGTAATTTTGGAAAAGTTTAAGGGT
*
8330722 CAAATATG-ATTTTTGG-AAAGTTTA
1 CAAA-ATGTAATTTTGGAAAAGTTTA
8330746 GGGACCTTTT
Statistics
Matches: 330, Mismatches: 66, Indels: 35
0.77 0.15 0.08
Matches are distributed among these distances:
28 5 0.02
29 90 0.27
30 177 0.54
31 54 0.16
32 4 0.01
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (30 bp):
CAAAATGTAATTTTGGAAAAGTTTAAGGGT
Found at i:8330612 original size:59 final size:59
Alignment explanation
Indices: 8330342--8330740 Score: 329
Period size: 59 Copynumber: 6.7 Consensus size: 59
8330332 TAAAATTGGG
* * * * * * *
8330342 ATTTTGGAGAAGTTAGGCGATCAAAATGTGATTTTGCAGAAGATAT-AGGGTCAAAACATA
1 ATTTTGGAAAAGTTTGG-GGTCAAAATGTAATTTTGGA-AAAATTTAAGGGTCAAAACATA
* * * * **
8330402 ATTTTGGAAAAGCTTGAGGGGTCCAAATGCAGTTTTGGAAAAATTTAAGGGTCAAAATGTA
1 ATTTTGGAAAAG-TT-TGGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
** * * * * **
8330463 ATTTTGGAAAAGCTTAAGGGTTAAAATGTAATTTTGGAAACATTTAGGGGTTAAAATGTA
1 ATTTTGGAAAAG-TTTGGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
* * * *
8330523 ATTTTTGGAAAATTTTAGGGGTCAAAATGTAATTTTAGAAAAGTTTAAGGGTCAAAACAAA
1 A-TTTTGGAAAAGTTT-GGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
* * * * *
8330584 ATTATGGAAAAGTTTGGGGTTAAAATGTAATTTTGGAAAAAATTAGGGGTCAAAATATA
1 ATTTTGGAAAAGTTTGGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
* * * * * * *
8330643 ATTTCGGAAAA-TTTAGTGGTCAAAATGTAATTTTGGAAGAGTTCAGGGGTCAAAA-GTA
1 ATTTTGGAAAAGTTT-GGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
* *
8330701 ATTTTAGAAAAGTTTGAGGGTCAAATATG-ATTTTTGGAAA
1 ATTTTGGAAAAGTTTG-GGGTCAAA-ATGTAATTTTGGAAA
8330741 GTTTAGGGAC
Statistics
Matches: 276, Mismatches: 54, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
58 15 0.05
59 99 0.36
60 71 0.26
61 88 0.32
62 3 0.01
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (59 bp):
ATTTTGGAAAAGTTTGGGGTCAAAATGTAATTTTGGAAAAATTTAAGGGTCAAAACATA
Found at i:8330615 original size:29 final size:29
Alignment explanation
Indices: 8330177--8330744 Score: 320
Period size: 30 Copynumber: 19.1 Consensus size: 29
8330167 TCTCGAGGAA
*
8330177 TTTGGGGATCAAAATTGAAATTTTGGAAAA-
1 TTTGGGG-TCAAAA-TGTAATTTTGGAAAAG
* * *
8330207 TTTGGGATTAAAATCG-AGCTTTTGGAAAA-
1 TTTGGGGTCAAAAT-GTA-ATTTTGGAAAAG
* *
8330236 TTTGAGGTCAAAAATGTGATTTTTTTGG-AAA-
1 TTTGGGGTC-AAAATGT-A--ATTTTGGAAAAG
* *
8330267 TTTAGGGGT-ACAATGGTAATTATTGG--ATG
1 TTT-GGGGTCAAAAT-GTAATT-TTGGAAAAG
* * *
8330296 TTCGGGG-CAAAATGGTAATTTTAGAGAAG
1 TTTGGGGTCAAAAT-GTAATTTTGGAAAAG
** *
8330325 TTTGGGGT-AAAATTGGGATTTTGGAGAAG
1 TTTGGGGTCAAAA-TGTAATTTTGGAAAAG
* * * * *
8330354 TTAGGCGATCAAAATGTGATTTTGCAGAAG
1 TTTGG-GGTCAAAATGTAATTTTGGAAAAG
* * **
8330384 ATATAGGGTCAAAACATAATTTTGGAAAAG
1 -TTTGGGGTCAAAATGTAATTTTGGAAAAG
* * * * *
8330414 CTTGAGGGGTCCAAATGCAGTTTTGGAAAAA
1 -TT-TGGGGTCAAAATGTAATTTTGGAAAAG
*
8330445 TTTAAGGGTCAAAATGTAATTTTGGAAAAG
1 TTT-GGGGTCAAAATGTAATTTTGGAAAAG
** *
8330475 CTTAAGGGTTAAAATGTAATTTTGGAAACA-
1 -TTTGGGGTCAAAATGTAATTTTGGAAA-AG
* *
8330505 TTTAGGGGTTAAAATGTAATTTTTGGAAAAT
1 TTT-GGGGTCAAAATGTAA-TTTTGGAAAAG
*
8330536 TTTAGGGGTCAAAATGTAATTTTAGAAAAG
1 TTT-GGGGTCAAAATGTAATTTTGGAAAAG
* *** *
8330566 TTTAAGGGTCAAAACAAAATTATGGAAAAG
1 TTT-GGGGTCAAAATGTAATTTTGGAAAAG
* *
8330596 TTTGGGGTTAAAATGTAATTTTGGAAAAAA
1 TTTGGGGTCAAAATGTAATTTTGG-AAAAG
* * *
8330626 TTAGGGGTCAAAATATAATTTCGGAAAA-
1 TTTGGGGTCAAAATGTAATTTTGGAAAAG
* *
8330654 TTTAGTGGTCAAAATGTAATTTTGGAAGAG
1 TTT-GGGGTCAAAATGTAATTTTGGAAAAG
* *
8330684 TTCAGGGGTCAAAA-GTAATTTTAGAAAAG
1 TT-TGGGGTCAAAATGTAATTTTGGAAAAG
*
8330713 TTTGAGGGTCAAATATG-ATTTTTGG-AAAG
1 TTTG-GGGTCAAA-ATGTAATTTTGGAAAAG
8330742 TTT
1 TTT
8330745 AGGGACCTTT
Statistics
Matches: 421, Mismatches: 85, Indels: 65
0.74 0.15 0.11
Matches are distributed among these distances:
27 3 0.01
28 23 0.05
29 129 0.31
30 191 0.45
31 65 0.15
32 10 0.02
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.33
Consensus pattern (29 bp):
TTTGGGGTCAAAATGTAATTTTGGAAAAG
Found at i:8331658 original size:42 final size:42
Alignment explanation
Indices: 8331406--8331908 Score: 266
Period size: 39 Copynumber: 12.6 Consensus size: 42
8331396 AATGATTACC
* *
8331406 ATCTGCCCCATGATCGAGGTAAGAGA--C--TGGCTGATGGTG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGG-TGATGGTG
* * * **
8331445 ATCTGCCTCAGGTTTGAGGTAAGAGA-TCGAGTGGT--T-GCA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGA-TGGTGATGGTG
* * * * **
8331484 ATTTGCTCCAGACTCGAGGTAAGAGATT---TGCTGATGACG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
* * * *
8331523 ATCTGTCCCAGACTCGAGGTAAGAGATT---TGCTGATGATG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
* * * * * **
8331562 ATCTACCCCAGGCTTGGGGTAAGAGA-TCAAAT-G-GCT-GCA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTC-GATGGTGATGGTG
* *
8331601 ATCTGCCCCAGGCTCGAGGCAAGAGATTCGCTGGTGATGGTG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
* * **
8331643 ATCTGCCCCAAGCTCGAGGTAAGAGA-TCAAAT-GT--T-GCA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTC-GATGGTGATGGTG
* *
8331681 ATCTGCCCCAAGCTCGAGGTAAGAGATTCGCTGGTGATGGTG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
* **
8331723 ATCTGCCCCAGGCTCGAGGTAAGAGA-TCAAATGGT--T-GCA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTC-GATGGTGATGGTG
* *
8331762 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGTTAGTGATGGTG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
* * * ***
8331804 ATTTGCCCCAGGCTCGGGGTAAGAGA-TCAAATGGT--T-ACA
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTC-GATGGTGATGGTG
* *
8331843 ATCTGCCCCAGGCTC-AGGGTAAGAGATT---TGCTGATGATG
1 ATCTGCCCCAGGCTCGA-GGTAAGAGATTCGATGGTGATGGTG
* * *
8331882 ATCTACCTCAGGCTCGCGGTAAGAGAT
1 ATCTGCCCCAGGCTCGAGGTAAGAGAT
8331909 CAAATGGTTA
Statistics
Matches: 356, Mismatches: 74, Indels: 68
0.71 0.15 0.14
Matches are distributed among these distances:
36 6 0.02
38 31 0.09
39 205 0.58
40 13 0.04
41 12 0.03
42 86 0.24
43 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (42 bp):
ATCTGCCCCAGGCTCGAGGTAAGAGATTCGATGGTGATGGTG
Found at i:8331673 original size:81 final size:81
Alignment explanation
Indices: 8331523--8331986 Score: 563
Period size: 81 Copynumber: 5.9 Consensus size: 81
8331513 GCTGATGACG
* * * * * *
8331523 ATCTGTCCCAGACTCGAGGTAAGAGATT---TGCTGATGATGATCTACCCCAGGCTTGGGGTAAG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
*
8331585 AGATCAAATGGCTGCA
66 AGATCAAATGGTTGCA
* * *
8331601 ATCTGCCCCAGGCTCGAGGCAAGAGATTCGCTGGTGATGGTGATCTGCCCCAAGCTCGAGGTAAG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
8331666 AGATCAAAT-GTTGCA
66 AGATCAAATGGTTGCA
* *
8331681 ATCTGCCCCAAGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGAGGTAAG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
8331746 AGATCAAATGGTTGCA
66 AGATCAAATGGTTGCA
* * *
8331762 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGTTAGTGATGGTGATTTGCCCCAGGCTCGGGGTAAG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
*
8331827 AGATCAAATGGTTACA
66 AGATCAAATGGTTGCA
* * * * *
8331843 ATCTGCCCCAGGCTC-AGGGTAAGAGATT---TGCTGATGATGATCTACCTCAGGCTCGCGGTAA
1 ATCTGCCCCAGGCTCGA-GGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAA
*
8331904 GAGATCAAATGGTTACA
65 GAGATCAAATGGTTGCA
* * * * * * * * *
8331921 ATCTGCCCTAGGTTGGGGGTAAAAGATTGGCT--T-ATAGTGATCTGCTCCAAGCTCGGGGTAAG
1 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
8331983 AGAT
66 AGAT
8331987 TAGGGTTTTC
Statistics
Matches: 339, Mismatches: 38, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
78 116 0.34
79 1 0.00
80 77 0.23
81 145 0.43
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (81 bp):
ATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGGGGTAAG
AGATCAAATGGTTGCA
Found at i:8331756 original size:161 final size:158
Alignment explanation
Indices: 8331535--8331986 Score: 606
Period size: 161 Copynumber: 2.8 Consensus size: 158
8331525 CTGTCCCAGA
* * *
8331535 CTCGAGGTAAGAGATTTGCTGATGATGATCTACCCCAGGCTTGGGGTAAGAGATCAAATGGCTGC
1 CTCGAGGTAAGAGATTTGCTGATGATGATCTACCCCAGGCTCGAGGTAAGAGATCAAATGGTTGC
* *
8331600 AATCTGCCCCAGGCTCGAGGCAAGAGATTCGCTGGTGATGGTGATCTGCCCCAAGCTCGAGGTAA
66 AATCTGCCCCAGGCTCGAGGTAAGAGATTCGCT-GTGATGGTGATCTGCCCCAAGCTCGGGGTAA
*
8331665 GAGATCAAAT-GTTGCAATCTGCCCCAAG
130 GAGATCAAATGGTTACAATCTGCCCCAAG
* * *
8331693 CTCGAGGTAAGAGATTCGCTGGTGATGGTGATCTGCCCCAGGCTCGAGGTAAGAGATCAAATGGT
1 CTCGAGGTAAGAGATT---TGCTGATGATGATCTACCCCAGGCTCGAGGTAAGAGATCAAATGGT
* * *
8331758 TGCAATCTGCCCCAGGCTCGAGGTAAGAGATTCGTTAGTGATGGTGATTTGCCCCAGGCTCGGGG
63 TGCAATCTGCCCCAGGCTCGAGGTAAGAGATTCGCT-GTGATGGTGATCTGCCCCAAGCTCGGGG
*
8331823 TAAGAGATCAAATGGTTACAATCTGCCCCAGG
127 TAAGAGATCAAATGGTTACAATCTGCCCCAAG
* * *
8331855 CTC-AGGGTAAGAGATTTGCTGATGATGATCTACCTCAGGCTCGCGGTAAGAGATCAAATGGTTA
1 CTCGA-GGTAAGAGATTTGCTGATGATGATCTACCCCAGGCTCGAGGTAAGAGATCAAATGGTTG
* * * * * * * *
8331919 CAATCTGCCCTAGGTTGGGGGTAAAAGATTGGCT-T-ATAGTGATCTGCTCCAAGCTCGGGGTAA
65 CAATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGTGATGGTGATCTGCCCCAAGCTCGGGGTAA
8331982 GAGAT
130 GAGAT
8331987 TAGGGTTTTC
Statistics
Matches: 258, Mismatches: 31, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
156 29 0.11
157 1 0.00
158 16 0.06
159 69 0.27
161 113 0.44
162 30 0.12
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (158 bp):
CTCGAGGTAAGAGATTTGCTGATGATGATCTACCCCAGGCTCGAGGTAAGAGATCAAATGGTTGC
AATCTGCCCCAGGCTCGAGGTAAGAGATTCGCTGTGATGGTGATCTGCCCCAAGCTCGGGGTAAG
AGATCAAATGGTTACAATCTGCCCCAAG
Found at i:8331942 original size:39 final size:39
Alignment explanation
Indices: 8331562--8331947 Score: 150
Period size: 39 Copynumber: 9.7 Consensus size: 39
8331552 GCTGATGATG
* * * * *
8331562 ATCTACCCCAGGCTTGGGGTAAGAGATCAAATGGCTGCA
1 ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
* * * ** ***
8331601 ATCTGCCCCAGGCTCGAGGCAAGAGATTC-GCTGGTGATGGTG
1 ATCTGCCCTAGGCTCGGGGTAAGAGA-TCAAATGGT--T-ACA
* * * *
8331643 ATCTGCCCCAAGCTCGAGGTAAGAGATCAAAT-GTTGCA
1 ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
* * * ** ***
8331681 ATCTGCCCCAAGCTCGAGGTAAGAGATTC-GCTGGTGATGGTG
1 ATCTGCCCTAGGCTCGGGGTAAGAGA-TCAAATGGT--T-ACA
* * *
8331723 ATCTGCCCCAGGCTCGAGGTAAGAGATCAAATGGTTGCA
1 ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
* * * * * ****
8331762 ATCTGCCCCAGGCTCGAGGTAAGAGATTCGTTAGTGATGGTG
1 ATCTGCCCTAGGCTCGGGGTAAGAGA-TC--AAATGGTTACA
* *
8331804 ATTTGCCCCAGGCTCGGGGTAAGAGATCAAATGGTTACA
1 ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
* * **** * * **
8331843 ATCTGCCCCAGGCTCAGGGTAAGAGATTTGCTGATGATG
1 ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
* *
8331882 ATCT-ACCTCAGGCTCGCGGTAAGAGATCAAATGGTTACA
1 ATCTGCCCT-AGGCTCGGGGTAAGAGATCAAATGGTTACA
* * *
8331921 ATCTGCCCTAGGTTGGGGGTAAAAGAT
1 ATCTGCCCTAGGCTCGGGGTAAGAGAT
8331948 TGGCTTATAG
Statistics
Matches: 265, Mismatches: 66, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
38 30 0.11
39 132 0.50
40 8 0.03
41 10 0.04
42 85 0.32
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (39 bp):
ATCTGCCCTAGGCTCGGGGTAAGAGATCAAATGGTTACA
Found at i:8332324 original size:49 final size:49
Alignment explanation
Indices: 8332271--8333789 Score: 948
Period size: 49 Copynumber: 30.8 Consensus size: 49
8332261 AGGTATAAGG
* * * *
8332271 TTCGCCATTGCGACTTAAACCTTTCCCTCTGTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * *
8332320 TTCGCCGTTGTGGCTTAAATCTTTCCTTTTCATG-CTCCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTT-ATGTCTTC-GTGGTACT--GGA
* * * * * *
8332370 TTCACCATTGCGACTTAGACCTTTCCCTTTGTGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * * *
8332419 TTCGCCATTGTGGCTTCAATCTTTCCCTTCATGT-TTC-TAAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGT--GGTAC-TGGA
* ** * *
8332468 TTCGCCATTGCGACTTAAA-CTTTTCCCTCCATATCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATC-TTTCCCTTTATGTCTTCGTGGTACTGGA
* * * *
8332517 TTCGCCATTGCGGCTTAAATCTTTCCCTTCATGTCTTCATGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * *
8332566 TTCGCCGTTGCGTCTTAAATCTTTCCCTTCATGT-TTCTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTC-GTGGTACT--GGA
* * * * * * * *
8332615 TTCACCATCGCGACTTAAACCTTTCCTTTTGTGTCTTCATGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * * * * *
8332664 TTCGCCATTGCGGCTTCAATCTTTCCCTTCATGTTTTTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTAC-TGGA
* * * *
8332713 TTCGCCGTTGCAACTTAAA-CTTTTCCCTTCATATCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATC-TTTCCCTTTATGTCTTCGTGGTACTGGA
* * * *
8332762 TTCTCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * *
8332811 TTCACCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTC-GTGGTAC-TGGA
* * * ** * *
8332860 TTCGCCATTACGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * *
8332909 TTCGCCATTGC-AGCTTAAATCTTTCCATTAATGTCTTCGTGGTATTGGA
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * * * *
8332958 TTCACCGTTACGGCTTAAATCTTTCCCTTTATGTTTTTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTAC-TGGA
** * * ** * * **
8333007 CCCGCGGTTGCGACTTAAACCTTTCCCTCCATATCTTTGTGGTACTAAA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * *
8333056 TTCGTCATTGC-AGCTTAAAACTTTCCCTTCATGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * * *
8333105 TTCACCATTGCGGCTTAAATCTTTCCCTTTATG-CTTCTGAGGTGCAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTC-GTGGTAC-TGGA
* * ** * * *
8333154 TTCACCGTTGCGACTTAAACCTTTCCCTCCATATCCTTC-TGGTATTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGT-CTTCGTGGTACTGGA
* * * * * *
8333203 TTCGTCATTACGGCTTAAATCTTT-CCTTTCATGTCTTTGTAGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTT-ATGTCTTCGTGGTACTGGA
* * * * *
8333252 TTCGCCGTTGTGGCTTAAATATTTCCTTTTATG-CTTC-TAAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGT--GGTAC-TGGA
* * * * * **
8333301 TTCGTCGTTGCGACTTAAACCTTTCCCTTCATATCCTT-ATGGTACTATA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGT-CTTCGTGGTACTGGA
* ** * * * *
8333350 TTTGCTATTGCGGCTTAAATCTTTCCCTTCATGTCTTCGTGGTATTAGA
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
* * * * * * * *
8333399 TTCGCCGTTGCGGCTTAAATCTTTCTCTTCATATTTTTGAGGTACAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTAC-TGGA
* * *
8333448 TTCGTCGTTGCGACTTAAACCTTTCCCTTTTGTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCC-TTTATGTCTTCGTGGTACTGGA
* * * * *
8333498 TTCGTCGTTGC-AGCTTAAATCTTTCCCTTTCATGTTTTTGAGGTACAAGG-
1 TTCGCCGTTGCGA-CTTAAATCTTTCCCTTT-ATGTCTTCGTGGTAC-TGGA
* *
8333548 TTTGCCGTTGCGACTTAAA-CATTTCCCTTTTCTGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATC-TTTCCC-TTTATGTCTTCGTGGTACTGGA
* * *
8333598 TTCACCGTTGCGGCTTAAATATTTCCCTTTCATG-CTT-GTAAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTT-ATGTCTTCGT--GGTACT--GGA
* * *
8333648 TTCACCATTGCGACTTAAACCTTTCCCTTTTATGTCTTCGTGGTACTGGA
1 TTCGCCGTTGCGACTTAAATCTTTCCC-TTTATGTCTTCGTGGTACTGGA
* * * *
8333698 TTCACCGTTGCGGCTTAAATCTTTCCCTTTCATGTCTTTGAGGTA-TAAGG-
1 TTCGCCGTTGCGACTTAAATCTTTCCCTTT-ATGTCTTCGTGGTACT--GGA
* *
8333748 TTCGCCGTTGCGACTTAAACCTTTCCCTTTTGTGTCTTCGTG
1 TTCGCCGTTGCGACTTAAATCTTTCCC-TTTATGTCTTCGTG
8333790 TTTTTCTCAG
Statistics
Matches: 1131, Mismatches: 263, Indels: 151
0.73 0.17 0.10
Matches are distributed among these distances:
47 2 0.00
48 38 0.03
49 791 0.70
50 267 0.24
51 31 0.03
52 2 0.00
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (49 bp):
TTCGCCGTTGCGACTTAAATCTTTCCCTTTATGTCTTCGTGGTACTGGA
Found at i:8332505 original size:98 final size:98
Alignment explanation
Indices: 8332212--8333776 Score: 1272
Period size: 98 Copynumber: 15.9 Consensus size: 98
8332202 TCAATCCGCA
* * * * *
8332212 TGGTACTAAATTCGTCGTTGCGGCTTAAATTTTTCCTTTCATGATTT-TGAGGTATAAGGTTCGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-TTTCTGAGGTACAAGGTTCGC
*
8332276 CATTGCGACTTAAACCTTTCCC-TCTGTGTCTTCG
65 CATTGCGACTTAAACCTTTCCCTTC-ATGTCTTCG
* * * * * * *
8332310 TGGTACTGGATTCGCCGTTGTGGCTTAAATCTTTCCTTTTCATGCTCCTGAGGTATAAGGTTCAC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCC-CTTCATGTTTCTGAGGTACAAGGTTCGC
* **
8332375 CATTGCGACTTAGACCTTTCCCTTTGTGTCTTCG
65 CATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * *
8332409 TGGTACTAGATTCGCCATTGTGGCTTCAATCTTTCCCTTCATGTTTCTAAGGTACAAGGTTCGCC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
* * *
8332474 ATTGCGACTTAAACTTTTCCCTCCATATCTTCG
66 ATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* *
8332507 TGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGTCTTC--ATGGTAC-TGGATTC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTGA-GGTACAAGG-TTC
* * *
8332569 GCCGTTGCGTCTTAAATCTTTCCCTTCATGT-TTCTG
63 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTC-G
* * * * * * * * * * * *
8332605 AGGTA-TAAGGTTCACCATCGCGACTTAAACCTTT-CCTT-TTGTGTCTTCATGGTACTAGATTC
1 TGGTACT-AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTC-TGA-GGTACAAGGTTC
* * * * *
8332667 GCCATTGCGGCTTCAATCTTTCCCTTCATGTTTTTG
63 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * ** * * * * *
8332703 AGGTACAAGGTTCGCCGTTGCAACTTAAA-CTTTTCCCTTCATATCTTC-GTGGTACTAGATTCT
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATC-TTTCCCTTCATGT-TTCTGAGGTACAAGGTTCG
*
8332766 CCATTGCGACTTAAATCTTTCCCTTCATGTCTTCG
64 CCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
*
8332801 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
* * *
8332866 ATTACGACTTAAACCTTTCCCTCCATATCTTCG
66 ATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * * * ** *
8332899 TGGTACTAGATTCGCCATTGCAGCTTAAATCTTTCCATTAATGTCTTC-GTGGTA-TTGGATTCA
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTGAGGTACAAGG-TTCG
* * * * * * *
8332962 CCGTTACGGCTTAAATCTTTCCCTTTATGTTTTTG
64 CCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * *** * * * * * * *
8332997 AGGTACAAGGCCCGCGGTTGCGACTTAAACCTTTCCCTCCATATCTT-TGTGGTACTAA-ATTCG
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTGAGGTAC-AAGGTTCG
* *
8333060 TCATTGC-AGCTTAAAACTTTCCCTTCATGTCTTCG
64 CCATTGCGA-CTTAAACCTTTCCCTTCATGTCTTCG
* * * * * * *
8333095 TGGTACTGGATTCACCATTGCGGCTTAAATCTTTCCCTTTATGCTTCTGAGGTGCAAGGTTCACC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
* * *
8333160 GTTGCGACTTAAACCTTTCCCTCCATATCCTTC-
66 ATTGCGACTTAAACCTTTCCCTTCATGT-CTTCG
* * * * * *
8333193 TGGTATTAGATTCGTCATTACGGCTTAAATCTTTCCTTTCATGTCTT-TGTA-GTAC-TGGATTC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTCTG-AGGTACAAGG-TTC
* * * ** * *
8333255 GCCGTTGTGGCTTAAATATTTCCTTTTATG-CTTC-
63 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * * * * * * * ** *
8333289 TAAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTTCAT-ATCCTTATGGTACTATATTT
1 T--GGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGA-GGTACAAGGTTC
* * *
8333353 GCTATTGCGGCTTAAATCTTTCCCTTCATGTCTTCG
63 GCCATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
* * * * *
8333389 TGGTATTAGATTCGCCGTTGCGGCTTAAATCTTTCTCTTCATATTTTTGAGGTACAAGGTTCGTC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
* **
8333454 GTTGCGACTTAAACCTTTCCCTTTTGTGTCTTCG
66 ATTGCGACTTAAACCTTTCCC-TTCATGTCTTCG
* * * * *
8333488 TGGTACTGGATTCGTCGTTGCAGCTTAAATCTTTCCCTTTCATGTTTTTGAGGTACAAGGTTTGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCC-TTCATGTTTCTGAGGTACAAGGTTCGC
* *
8333553 CGTTGCGACTTAAACATTTCCCTTTTC-TGTCTTCG
65 CATTGCGACTTAAACCTTTCCC--TTCATGTCTTCG
* * * * * * * *
8333588 TGGTACTGGATTCACCGTTGCGGCTTAAATATTTCCCTTTCATGCTTGTAAGGTATAAGGTTCAC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCC-TTCATGTTTCTGAGGTACAAGGTTCGC
*
8333653 CATTGCGACTTAAACCTTTCCCTTTTATGTCTTCG
65 CATTGCGACTTAAACCTTTCCC-TTCATGTCTTCG
* * *
8333688 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTTCATGTCTT-TGAGGTATAAGGTTCG
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCC-TTCATGT-TTCTGAGGTACAAGGTTCG
*
8333752 CCGTTGCGACTTAAACCTTTCCCTT
64 CCATTGCGACTTAAACCTTTCCCTT
8333777 TTGTGTCTTC
Statistics
Matches: 1185, Mismatches: 235, Indels: 93
0.78 0.16 0.06
Matches are distributed among these distances:
95 2 0.00
96 10 0.01
97 24 0.02
98 761 0.64
99 162 0.14
100 219 0.18
101 7 0.01
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (98 bp):
TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
ATTGCGACTTAAACCTTTCCCTTCATGTCTTCG
Found at i:8332587 original size:147 final size:146
Alignment explanation
Indices: 8332212--8333776 Score: 1263
Period size: 147 Copynumber: 10.6 Consensus size: 146
8332202 TCAATCCGCA
* * * * * * *
8332212 TGGTACTAAATTCGTCGTTGCGGCTTAAATTTTTCCTTTCATGATTTTGA-GGTATAAGGTTCGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-TCTTCATGGTACAAGGTTCGC
* * * ** * * *
8332276 CATTGCGACTTAAACCTTTCCC-TCTGTGTCTTCGTGGTACTGGATTCGCCGTTGTGGCTTAAAT
65 CGTTGCGACTTAAACCTTTCCCTTC-ATATCTTC-TGGTACAAGATTCGCCATTGCGACTTAAAT
* *
8332340 CTTTCCTTTTCATG-CTCCTG
128 CTTTCC-CTTCATGTCTTC-G
* * * * * * * ** * * *
8332360 AGGTA-TAAGGTTCACCATTGCGACTTAGACCTTTCCCTTTGTGTCTTCGTGGTACTAGATTCGC
1 TGGTACT-AGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCATGGTACAAGGTTCGC
* * * * * * *
8332424 CATTGTGGCTTCAATCTTTCCCTTCATGT-TTCTAAGGTACAAGGTTCGCCATTGCGACTTAAA-
65 CGTTGCGACTTAAACCTTTCCCTTCATATCTTCT--GGTACAAGATTCGCCATTGCGACTTAAAT
* *
8332487 CTTTTCCCTCCATATCTTCG
128 C-TTTCCCTTCATGTCTTCG
* *
8332507 TGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGTCTTCATGGTAC-TGGATTCGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCATGGTACAAGG-TTCGC
* * * * * * * *
8332571 CGTTGCGTCTTAAATCTTTCCCTTCATGT-TTCTGAGGTATAAGGTTCACCATCGCGACTTAAAC
65 CGTTGCGACTTAAACCTTTCCCTTCATATCTTCT--GGTACAAGATTCGCCATTGCGACTTAAAT
* ** *
8332635 CTTTCCTTTTGTGTCTTCA
128 CTTTCCCTTCATGTCTTCG
* * * *
8332654 TGGTACTAGATTCGCCATTGCGGCTTCAATCTTTCCCTTCATGTTTTTGA-GGTACAAGGTTCGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-TCTTCATGGTACAAGGTTCGC
* * * *
8332718 CGTTGCAACTTAAACTTTTCCCTTCATATCTTCGTGGTACTAGATTCTCCATTGCGACTTAAATC
65 CGTTGCGACTTAAACCTTTCCCTTCATATCTTC-TGGTACAAGATTCGCCATTGCGACTTAAATC
8332783 TTTCCCTTCATGTCTTCG
129 TTTCCCTTCATGTCTTCG
*
8332801 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGT-TTC-TGAGGTACAAGGTTCG
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCAT--GGTACAAGGTTCG
* * * *
8332864 CCATTACGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGATTCGCCATTGC-AGCTTAAA
64 CCGTTGCGACTTAAACCTTTCCCTTCATATCTTC-TGGTACAAGATTCGCCATTGCGA-CTTAAA
* *
8332928 TCTTTCCATTAATGTCTTCG
127 TCTTTCCCTTCATGTCTTCG
* * * * * * * **
8332948 TGGTATTGGATTCACCGTTACGGCTTAAATCTTTCCCTTTATGTTTTTGA-GGTACAAGGCCCGC
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATG-TCTTCATGGTACAAGGTTCGC
* * * *
8333012 GGTTGCGACTTAAACCTTTCCCTCCATATCTTTGTGGTACTAA-ATTCGTCATTGC-AGCTTAAA
65 CGTTGCGACTTAAACCTTTCCCTTCATATC-TTCTGGTAC-AAGATTCGCCATTGCGA-CTTAAA
*
8333075 ACTTTCCCTTCATGTCTTCG
127 TCTTTCCCTTCATGTCTTCG
* * * * * *
8333095 TGGTACTGGATTCACCATTGCGGCTTAAATCTTTCCCTTTATG-CTTC-TGAGGTGCAAGGTTCA
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCAT--GGTACAAGGTTCG
* ** * * *
8333158 CCGTTGCGACTTAAACCTTTCCCTCCATATCCTTCTGGTATTAGATTCGTCATTACGGCTTAAAT
64 CCGTTGCGACTTAAACCTTTCCCTTCATAT-CTTCTGGTACAAGATTCGCCATTGCGACTTAAAT
* *
8333223 CTTTCCTTTCATGTCTTTG
128 CTTTCCCTTCATGTCTTCG
* * * * * * * *
8333242 TAGTACTGGATTCGCCGTTGTGGCTTAAATATTTCCTTTTATG-CTTCTAAGGTACAAGGTTCGT
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTC-ATGGTACAAGGTTCGC
* * * * * *
8333306 CGTTGCGACTTAAACCTTTCCCTTCATATCCTTATGGTACTATATTTGCTATTGCGGCTTAAATC
65 CGTTGCGACTTAAACCTTTCCCTTCATAT-CTTCTGGTACAAGATTCGCCATTGCGACTTAAATC
8333371 TTTCCCTTCATGTCTTCG
129 TTTCCCTTCATGTCTTCG
* * * * * *
8333389 TGGTATTAGATTCGCCGTTGCGGCTTAAATCTTTCTCTTCATATTTTTGA-GGTACAAGGTTCGT
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCAT-GTCTTCATGGTACAAGGTTCGC
** * ** * *
8333453 CGTTGCGACTTAAACCTTTCCCTTTTGTGTCTTCGTGGTACTGGATTCGTCGTTGC-AGCTTAAA
65 CGTTGCGACTTAAACCTTTCCC-TTCATATCTTC-TGGTACAAGATTCGCCATTGCGA-CTTAAA
* *
8333517 TCTTTCCCTTTCATGTTTTTG
127 TCTTTCCC-TTCATGTCTTCG
* * * * * * *
8333538 AGGTACAAGGTTTGCCGTTGCGACTTAAA-CATTTCCCTTTTC-TGTCTTCGTGGTAC-TGGATT
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATC-TTTCCC--TTCATGTCTTCATGGTACAAGG-TT
* * ** * * * * *
8333600 CACCGTTGCGGCTTAAATATTTCCCTTTCAT-GCTTGTAAGGTATAAGGTTCACCATTGCGACTT
62 CGCCGTTGCGACTTAAACCTTTCCC-TTCATATCTTCT--GGTACAAGATTCGCCATTGCGACTT
* *
8333664 AAACCTTTCCCTTTTATGTCTTCG
124 AAATCTTTCCC-TTCATGTCTTCG
* * * *
8333688 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTTCATGTCTTTGA-GGTATAAGGTTCG
1 TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCC-TTCATGTC-TTCATGGTACAAGGTTCG
8333752 CCGTTGCGACTTAAACCTTTCCCTT
64 CCGTTGCGACTTAAACCTTTCCCTT
8333777 TTGTGTCTTC
Statistics
Matches: 1153, Mismatches: 215, Indels: 97
0.79 0.15 0.07
Matches are distributed among these distances:
145 4 0.00
146 5 0.00
147 807 0.70
148 142 0.12
149 59 0.05
150 127 0.11
151 9 0.01
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (146 bp):
TGGTACTAGATTCGCCGTTGCGGCTTAAATCTTTCCCTTCATGTCTTCATGGTACAAGGTTCGCC
GTTGCGACTTAAACCTTTCCCTTCATATCTTCTGGTACAAGATTCGCCATTGCGACTTAAATCTT
TCCCTTCATGTCTTCG
Found at i:8333449 original size:294 final size:293
Alignment explanation
Indices: 8332212--8333775 Score: 1426
Period size: 294 Copynumber: 5.3 Consensus size: 293
8332202 TCAATCCGCA
* ** * * * *
8332212 TGGTACTAAATTCGTCGTTGCGGCTTAAATTTTTCCTTTCATGATTTTGAGGTATAAGGTTCGCC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACAAGGTTCGCC
* ** * * * **
8332277 ATTGCGACTTAAACCTTTCCCTCTGTGTCTTCGTGGTACTGGATTCGCCGTTGTGGCTTAAATCT
66 GTTGCGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATCT
* * * * * ** *
8332342 TTCCTTTTCATG-C-TCCTGAGGTA-TAAGG-TTCACCATTGCGACTTAGACCTTTCCCTTTGTG
131 TTCC-TTTCATGTCTTCGT-A-GTACT--GGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATG
* * * * * * * * * * *
8332403 TCTTC-GTGGTACTAGATTCGCCATTGTGGCTTCAATCTTTCCCTTCATGT-TTCTAAGGTAC-A
191 -CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTCATATCCT-TATGGTACTA
* *
8332465 AGGTTCGCCATTGCGACTTAAA-CTTTTCCCTCCATATCTTCG
254 A--TTCGCCATTGCGACTTAAATC-TTTCCCTTCATGTCTTCG
* * * * *
8332507 TGGTACTAGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATG-TCTTCATGGTAC-TGGATTCG
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGA-GGTACAAGG-TTCG
* * * * * * * *
8332570 CCGTTGCGTCTTAAATCTTTCCCTTCATGT-TTCTGAGGTA-TAAGGTTCACCATCGC-GACTTA
64 CCGTTGCGACTTAAACCTTTCCCTCCATATCTTC-GTGGTACT-AGATTCGCCATTGCAG-CTTA
* ** * * * * * * *
8332632 AACCTTTCCTTTTGTGTCTTCATGGTACTAGATTCGCCATTGCGGCTTCAATCTTTCCCTTCATG
126 AATCTTTCCTTTCATGTCTTCGTAGTACTGGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATG
* * * * *
8332697 TTTTTGAGGTACAAGGTTCGCCGTTGCAACTTAAACTTTTCCCTTCATAT-CTTCGTGGTACTAG
191 CTTCTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTCATATCCTT-ATGGTACTA-
*
8332761 ATTCTCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCG
254 ATTCGCCATTGCGACTTAAATCTTTCCCTTCATGTCTTCG
*
8332801 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTCTGAGGTACAAGGTTCGCC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACAAGGTTCGCC
* *
8332866 ATTACGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATCT
66 GTTGCGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATCT
* * * * * * * * *
8332931 TTCCATTAATGTCTTCGTGGTATTGGATTCACCGTTACGGCTTAAATCTTTCCCTTTATGTTTTT
131 TTCCTTTCATGTCTTCGTAGTACTGGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATGCTTCT
** * * * * *
8332996 GAGGTACAAGGCCCGCGGTTGCGACTTAAACCTTTCCCTCCATATCTTTGTGGTACTAAATTCGT
196 GAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTCATATCCTTATGGTACT-AATTCGC
*
8333061 CATTGC-AGCTTAAAACTTTCCCTTCATGTCTTCG
260 CATTGCGA-CTTAAATCTTTCCCTTCATGTCTTCG
* * * * * * *
8333095 TGGTACTGGATTCACCATTGCGGCTTAAATCTTTCCCTTTATGCTTCTGAGGTGCAAGGTTCACC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACAAGGTTCGCC
* * * *
8333160 GTTGCGACTTAAACCTTTCCCTCCATATCCTTC-TGGTATTAGATTCGTCATTACGGCTTAAATC
66 GTTGCGACTTAAACCTTTCCCTCCATAT-CTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATC
* * *
8333224 TTTCCTTTCATGTCTTTGTAGTACTGGATTCGCCGTTGTGGCTTAAATATTTCCTTTTATGCTTC
130 TTTCCTTTCATGTCTTCGTAGTACTGGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATGCTTC
* * *
8333289 TAAGGTACAAGGTTCGTCGTTGCGACTTAAACCTTTCCCTTCATATCCTTATGGTACTATATTTG
195 TGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTCATATCCTTATGGTACTA-ATTCG
* *
8333354 CTATTGCGGCTTAAATCTTTCCCTTCATGTCTTCG
259 CCATTGCGACTTAAATCTTTCCCTTCATGTCTTCG
* * * * *
8333389 TGGTATTAGATTCGCCGTTGCGGCTTAAATCTTTCTCTTCATATTTTTGAGGTACAAGGTTCGTC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACAAGGTTCGCC
*** * * * *
8333454 GTTGCGACTTAAACCTTTCCCTTTTGTGTCTTCGTGGTACTGGATTCGTCGTTGCAGCTTAAATC
66 GTTGCGACTTAAACCTTTCCC-TCCATATCTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATC
* * * * * * *
8333519 TTTCCCTTTCATGTTTTTG-AGGTACAAGG-TTTGCCGTTGCGACTTAAACATTTCCCTTTTCTG
130 TTT-CCTTTCATGTCTTCGTA-GTAC-TGGATTCGCCGTTGCGGCTTAAATATTTCCC-TTTATG
* * * * ** * * *
8333582 TCTTC-GTGGTAC-TGGATTCACCGTTGCGGCTTAAATATTTCCCTTTCAT-GCTTGTAAGGTA-
191 -CTTCTGAGGTACAAGG-TTCGCCGTTGCGACTTAAACCTTTCCC-TTCATATCCT-TATGGTAC
* * *
8333643 TAAGGTTCACCATTGCGACTTAAACCTTTCCCTTTTATGTCTTCG
252 TAA--TTCGCCATTGCGACTTAAATCTTTCCC-TTCATGTCTTCG
* * *
8333688 TGGTACTGGATTCACCGTTGCGGCTTAAATCTTTCCCTTTCATGTCTTTGAGGTATAAGGTTCGC
1 TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCC-TTCATGTTTTTGAGGTACAAGGTTCGC
8333753 CGTTGCGACTTAAACCTTTCCCT
65 CGTTGCGACTTAAACCTTTCCCT
8333776 TTTGTGTCTT
Statistics
Matches: 1047, Mismatches: 183, Indels: 74
0.80 0.14 0.06
Matches are distributed among these distances:
293 6 0.01
294 680 0.65
295 149 0.14
296 47 0.04
297 38 0.04
298 37 0.04
299 45 0.04
300 45 0.04
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (293 bp):
TGGTACTAGATTCACCGTTGCGGCTTAAATCTTTCCCTTCATGTTTTTGAGGTACAAGGTTCGCC
GTTGCGACTTAAACCTTTCCCTCCATATCTTCGTGGTACTAGATTCGCCATTGCAGCTTAAATCT
TTCCTTTCATGTCTTCGTAGTACTGGATTCGCCGTTGCGGCTTAAATATTTCCCTTTATGCTTCT
GAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTTCATATCCTTATGGTACTAATTCGCC
ATTGCGACTTAAATCTTTCCCTTCATGTCTTCG
Found at i:8334842 original size:23 final size:22
Alignment explanation
Indices: 8334809--8334872 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 22
8334799 GACCTCTCCT
*
8334809 TTTTTCATTTTTCTCTATTTTC
1 TTTTTCTTTTTTCTCTATTTTC
*
8334831 TTTTTCCTTTTTTTCTTCTTTTTTC
1 TTTTT-C-TTTTTTC-TCTATTTTC
*
8334856 TTTCTTTTTTTTTCTCT
1 TTT-TTCTTTTTTCTCT
8334873 TCTTTATTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
22 5 0.14
23 4 0.11
24 13 0.37
25 11 0.31
26 2 0.06
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTCTTTTTTCTCTATTTTC
Found at i:8334843 original size:24 final size:23
Alignment explanation
Indices: 8334816--8334872 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
8334806 CCTTTTTTCA
8334816 TTTTTCTCTATTTTCTTT-TTCCTT
1 TTTTTCTCTATTTTCTTTCTT--TT
*
8334840 TTTTTCTTCTTTTTTCTTTCTTTT
1 TTTTTC-TCTATTTTCTTTCTTTT
8334864 TTTTTCTCT
1 TTTTTCTCT
8334873 TCTTTATTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 3 0.10
24 14 0.47
25 11 0.37
26 2 0.07
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (23 bp):
TTTTTCTCTATTTTCTTTCTTTT
Done.