Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 39 of 144
Found at i:9988429 original size:20 final size:21
Alignment explanation
Indices: 9988378--9988428 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
9988368 TATTTACTAC
9988378 TACTAACAAAATAAAATTACT
1 TACTAACAAAATAAAATTACT
9988399 T-CTAACAAAATAAAATTGA-T
1 TACTAACAAAATAAAATT-ACT
9988419 TACTAACAAA
1 TACTAACAAA
9988429 TTAATTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (21 bp):
TACTAACAAAATAAAATTACT
Found at i:9989661 original size:28 final size:29
Alignment explanation
Indices: 9989615--9989705 Score: 80
Period size: 32 Copynumber: 3.1 Consensus size: 29
9989605 GTTAAATAAC
* *
9989615 TATATAAAAATTA-TCAATAAATAAAAAA
1 TATATAAATATTATTAAATAAATAAAAAA
9989643 TATAT-AATATTATTAAATATTAA-AATAAAA
1 TATATAAATATTATTAAATA--AATAA-AAAA
* *
9989673 TAATATAAATATTTTTAAAAAAATTAAAAAA
1 T-ATATAAATATTATTAAATAAA-TAAAAAA
9989704 TA
1 TA
9989706 ATACGGACGG
Statistics
Matches: 51, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
27 6 0.12
28 10 0.20
29 2 0.04
30 10 0.20
31 9 0.18
32 14 0.27
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (29 bp):
TATATAAATATTATTAAATAAATAAAAAA
Found at i:9990680 original size:3 final size:3
Alignment explanation
Indices: 9990674--9990711 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
9990664 CTCCATTTTT
*
9990674 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
9990712 TTTTTTCCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:9992755 original size:39 final size:41
Alignment explanation
Indices: 9992689--9992787 Score: 150
Period size: 40 Copynumber: 2.5 Consensus size: 41
9992679 TATGCACTCA
* * *
9992689 ATGGACACCATTT-GAAGAGTCATAACCC-TTTCATATTGG
1 ATGGACACCTTTTGGAAGAGCCACAACCCTTTTCATATTGG
9992728 ATGGACACCTTTTGGAA-AGCCACAACCCTTTTCATATTGG
1 ATGGACACCTTTTGGAAGAGCCACAACCCTTTTCATATTGG
9992768 ATGGACACCTTTTGGAAGAG
1 ATGGACACCTTTTGGAAGAG
9992788 ACTTGTCCCA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
39 21 0.39
40 31 0.57
41 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (41 bp):
ATGGACACCTTTTGGAAGAGCCACAACCCTTTTCATATTGG
Found at i:10001036 original size:26 final size:26
Alignment explanation
Indices: 10001007--10001282 Score: 258
Period size: 26 Copynumber: 10.6 Consensus size: 26
10000997 TTGGCGAACA
* *
10001007 TAAATGTAT-ATCTATGCTGACGAGTG
1 TAAACGTATAATC-ATGCTGACGAGCG
* *
10001033 TAAACGTAT-ATCCATACTGACGAGTG
1 TAAACGTATAAT-CATGCTGACGAGCG
*
10001059 TAAACGTAT-ATCCATACTGACGAGTC-
1 TAAACGTATAAT-CATGCTGACGAG-CG
10001085 TAAACGTAT-ATCCATGCT-AGCGAGCG
1 TAAACGTATAAT-CATGCTGA-CGAGCG
* * * ** *
10001111 TAGACGCATAATCATGTTGGTGAGCA
1 TAAACGTATAATCATGCTGACGAGCG
* *
10001137 TAGACGCATAATCATGCTGACGAGCG
1 TAAACGTATAATCATGCTGACGAGCG
* *
10001163 TAAATGTATAATCATGCTGGCGAGCG
1 TAAACGTATAATCATGCTGACGAGCG
* *
10001189 TAAATGTATAATCATGCTGGCGAGCG
1 TAAACGTATAATCATGCTGACGAGCG
*
10001215 TAAACGCATAATCATGCTGACGAGCG
1 TAAACGTATAATCATGCTGACGAGCG
* * *
10001241 TAAACTTATAATCATGTTGACGAGCA
1 TAAACGTATAATCATGCTGACGAGCG
*
10001267 TAAACTTATAATCATG
1 TAAACGTATAATCATG
10001283 GTGGCGAACG
Statistics
Matches: 219, Mismatches: 25, Indels: 12
0.86 0.10 0.05
Matches are distributed among these distances:
25 2 0.01
26 214 0.98
27 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (26 bp):
TAAACGTATAATCATGCTGACGAGCG
Found at i:10001042 original size:52 final size:52
Alignment explanation
Indices: 10000980--10001102 Score: 147
Period size: 52 Copynumber: 2.4 Consensus size: 52
10000970 CTCTAGTAGC
* * * * * *
10000980 GTAAATGTATATCCATGTTGGCGAACATAAATGTATATCTATGCTGACGAGT
1 GTAAACGTATATCCATGCTGACGAACATAAACGTATATCCATACTGACGAGT
* ***
10001032 GTAAACGTATATCCATACTGACGAGTGTAAACGTATATCCATACTGACGAGT
1 GTAAACGTATATCCATGCTGACGAACATAAACGTATATCCATACTGACGAGT
*
10001084 CTAAACGTATATCCATGCT
1 GTAAACGTATATCCATGCT
10001103 AGCGAGCGTA
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (52 bp):
GTAAACGTATATCCATGCTGACGAACATAAACGTATATCCATACTGACGAGT
Found at i:10003311 original size:41 final size:41
Alignment explanation
Indices: 10003160--10003328 Score: 159
Period size: 41 Copynumber: 4.1 Consensus size: 41
10003150 GTATAATTAT
*
10003160 CTGATTCAATACACC-AGCACAAAGCCTGCTAGGCTCAAGGC
1 CTGATTCAATACACCGA-CTCAAAGCCTGCTAGGCTCAAGGC
* * * * *
10003201 CT-ATTTCGATACACCAACTCGAAGCCTGCTAGGCACAAAGC
1 CTGA-TTCAATACACCGACTCAAAGCCTGCTAGGCTCAAGGC
* *
10003242 TTGAATT-AATATACCGGCACT-AAA-CCTGCTAGGCTCAAGGC
1 CTG-ATTCAATACACC-G-ACTCAAAGCCTGCTAGGCTCAAGGC
* * *
10003283 TTGATTCAATACATCGACTCAAAGCCTGCTAAGCTCAAGGC
1 CTGATTCAATACACCGACTCAAAGCCTGCTAGGCTCAAGGC
10003324 CTGAT
1 CTGAT
10003329 ATTTAGGTGC
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
39 3 0.03
40 8 0.08
41 83 0.81
42 5 0.05
43 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (41 bp):
CTGATTCAATACACCGACTCAAAGCCTGCTAGGCTCAAGGC
Found at i:10008642 original size:18 final size:18
Alignment explanation
Indices: 10008588--10008676 Score: 63
Period size: 18 Copynumber: 4.9 Consensus size: 18
10008578 TGCTCGTAAC
* *
10008588 TAAGTTGAGCTCGCAGCTT
1 TAAG-TGAGCTCACAACTT
***
10008607 TAA-TGAGCTCATTTCTT
1 TAAGTGAGCTCACAACTT
*
10008624 TAGGTGAGCTCACAACTT
1 TAAGTGAGCTCACAACTT
* * *
10008642 TAATTGAGTTCGCAACTT
1 TAAGTGAGCTCACAACTT
* *
10008660 CAAGAGAGCTCACAACT
1 TAAGTGAGCTCACAACT
10008677 CCGTGGGAAG
Statistics
Matches: 52, Mismatches: 17, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
17 12 0.23
18 37 0.71
19 3 0.06
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (18 bp):
TAAGTGAGCTCACAACTT
Found at i:10009677 original size:3 final size:3
Alignment explanation
Indices: 10009671--10009699 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10009661 CCACCACCAC
10009671 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
10009700 CTTTCTCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:10011320 original size:14 final size:14
Alignment explanation
Indices: 10011301--10011329 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10011291 AAGAACCAAA
10011301 CATAAATTCAATAT
1 CATAAATTCAATAT
10011315 CATAAATTCAATAT
1 CATAAATTCAATAT
10011329 C
1 C
10011330 CAAGAACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.34
Consensus pattern (14 bp):
CATAAATTCAATAT
Found at i:10011322 original size:40 final size:40
Alignment explanation
Indices: 10011275--10011355 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
10011265 ATAAGTAGAA
10011275 CATAAATTCAATATCCAAGAACCAAACATAAATTCAATAT
1 CATAAATTCAATATCCAAGAACCAAACATAAATTCAATAT
10011315 CATAAATTCAATATCCAAGAACCAAACATAAATTCAATAT
1 CATAAATTCAATATCCAAGAACCAAACATAAATTCAATAT
10011355 C
1 C
10011356 CAAGAACCAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.52, C:0.21, G:0.02, T:0.25
Consensus pattern (40 bp):
CATAAATTCAATATCCAAGAACCAAACATAAATTCAATAT
Found at i:10011351 original size:26 final size:26
Alignment explanation
Indices: 10011315--10011372 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
10011305 AATTCAATAT
10011315 CATAAATTCAATATCCAAGAACCAAA
1 CATAAATTCAATATCCAAGAACCAAA
10011341 CATAAATTCAATATCCAAGAACCAAA
1 CATAAATTCAATATCCAAGAACCAAA
10011367 CATAAA
1 CATAAA
10011373 CAACTATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.55, C:0.22, G:0.03, T:0.19
Consensus pattern (26 bp):
CATAAATTCAATATCCAAGAACCAAA
Found at i:10011380 original size:138 final size:142
Alignment explanation
Indices: 10011070--10011462 Score: 541
Period size: 138 Copynumber: 2.8 Consensus size: 142
10011060 AACAAATTTT
* * *
10011070 ATATCCAA-AATCAAATATAAACAACTATTGATAAAACTAAAATACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
* * **
10011134 AAATTCAATATCCAAAAACCAAACATAAACAATTATTGATAAAACTAAATTGCACATAAATAAGT
66 AAATTCAATATCCAAAAACCAAACATAAACAATTATTCATAAAACTAAATTGCAC--AAAGAACC
10011199 AGAACATAAATTCA
129 AGAACATAAATTCA
* * *
10011213 ATATTCAAGAACCAAACATAAACAACTATTGATAAAATTAGATTACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
* * *
10011278 AAATTCAATATCCAAGAACCAAACATAAATTCAA-TA-TCAT-AAATTCAATAT-C-C-AAGAAC
66 AAATTCAATATCCAAAAACCAAACATAAA--CAATTATTCATAAAACTAAAT-TGCACAAAGAAC
10011337 CA-AACATAAATTCA
128 CAGAACATAAATTCA
10011351 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
1 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
* * *
10011416 AAATTCAATATCCAAAAATCAAACATAAACAACTATTGATAAAACTA
66 AAATTCAATATCCAAAAACCAAACATAAACAATTATTCATAAAACTA
10011463 GTTTAGCATT
Statistics
Matches: 222, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
136 3 0.01
137 2 0.01
138 104 0.47
139 9 0.04
142 1 0.00
143 15 0.07
144 83 0.37
145 2 0.01
146 3 0.01
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.23
Consensus pattern (142 bp):
ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
AAATTCAATATCCAAAAACCAAACATAAACAATTATTCATAAAACTAAATTGCACAAAGAACCAG
AACATAAATTCA
Found at i:10011488 original size:72 final size:72
Alignment explanation
Indices: 10011070--10011462 Score: 527
Period size: 72 Copynumber: 5.6 Consensus size: 72
10011060 AACAAATTTT
* * *
10011070 ATATCC-AAAATCAAATATAAACAACTATTGATAAAACTAAAATACACATAAATAAGTAGAACAT
1 ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
10011134 AAATTCA
66 AAATTCA
* *
10011141 ATATCCAAAAACCAAACATAAACAATTATTGATAAAACTAAATTGCACATAAATAAGTAGAACAT
1 ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
10011206 AAATTCA
66 AAATTCA
* * * *
10011213 ATATTCAAGAACCAAACATAAACAACTATTGATAAAATTAGATTACACATAAATAAGTAGAACAT
1 ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
10011278 AAATTCA
66 AAATTCA
* * * * * **
10011285 ATATCCAAGAACCAAACATAAATTCAA-TA-TCAT-AAATTCAA-TATC-C---AAGAACCA-AA
1 ATATCCAAAAACCAAACATAAA--CAACTATTGATAAAACTAAATTA-CACATAAATAAGTAGAA
10011341 CATAAATTCA
63 CATAAATTCA
*
10011351 ATATCCAAGAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
1 ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
10011416 AAATTCA
66 AAATTCA
*
10011423 ATATCCAAAAATCAAACATAAACAACTATTGATAAAACTA
1 ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTA
10011463 GTTTAGCATT
Statistics
Matches: 283, Mismatches: 26, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
64 3 0.01
65 2 0.01
66 37 0.13
67 12 0.04
68 3 0.01
70 3 0.01
71 18 0.06
72 200 0.71
73 2 0.01
74 3 0.01
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.23
Consensus pattern (72 bp):
ATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAAATTACACATAAATAAGTAGAACAT
AAATTCA
Found at i:10017616 original size:59 final size:61
Alignment explanation
Indices: 10017389--10017622 Score: 350
Period size: 61 Copynumber: 3.9 Consensus size: 61
10017379 NNNNNNNNNN
* * * *
10017389 TTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* *
10017450 TTACATGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
*
10017511 TTACGTGAGAATTGTTTCTCTCTT-TGTCTTGGAC-AACATCCAAACTTGTCAACAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGT-TCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* *
10017571 TTACGT-AAAATTGTTTCTCTCTTGTTCTTGGACGAACAT-CGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAAA
10017623 CTTTTATAAT
Statistics
Matches: 160, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
59 35 0.22
60 37 0.23
61 88 0.55
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
Found at i:10017889 original size:60 final size:60
Alignment explanation
Indices: 10017776--10017938 Score: 206
Period size: 60 Copynumber: 2.7 Consensus size: 60
10017766 TTGAATTAAT
* * * * *
10017776 AACTTATTTATGTGAGAATTGGTTCT-CTGTGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATTGTTTCTCCT-AGTTCTTGGACGAACTTACAAACTTGTCAAA
*
10017836 AACTTATTTACGTGAGTATTGTTTTCTCCTAGTTCTTGGACGAACTTAC-AACTTGTCAAA
1 AACTTATTTACGTGAGAATTG-TTTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAA
* * *
10017896 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTC-TGGATGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCCTAGTTCTTGGACGAAC
10017939 ATCCGAACTT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
58 8 0.09
59 12 0.13
60 48 0.53
61 21 0.23
62 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.40
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10018200 original size:62 final size:61
Alignment explanation
Indices: 10018101--10018288 Score: 209
Period size: 62 Copynumber: 3.0 Consensus size: 61
10018091 TCCTTGAATT
* * * *
10018101 AAAAACTTATTTTATGTGA-AATTGTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTA-TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * * *
10018163 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* *
10018225 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTCTT-GAAGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGG-TTCTTGGACGAAC-TTCGAACTTGTC
10018287 AA
1 AA
10018289 CTTTTACAGG
Statistics
Matches: 105, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
61 9 0.09
62 89 0.85
63 7 0.07
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (61 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10018354 original size:332 final size:333
Alignment explanation
Indices: 10017440--10018496 Score: 1355
Period size: 332 Copynumber: 3.2 Consensus size: 333
10017430 CGAACTTGTC
* * *
10017440 AAAAACTTATTTACATGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * * * *
10017504 AACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTTGGAC-AACATCCAAACTTGTCAACAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAAC
* *
10017567 TTATTTACGTAA-AATTGTTTCTCTCTTGTTCTTGGACGAACAT-CGAACTTGTCAAACTTTTAT
131 TTATTTACGTAAGAATTGTTTCTCTCTTGTTCTT-GAAGAACATCCGAACTTGTCAAACTTTTAC
* * * *
10017630 A-ATTTTCTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTT
195 AGATTCT-TTTATAACTTCAGTTCCAGAAAGTATTC-A-ATGATCCATTCTTTCT-GCAATTTTT
*
10017694 CAAACATTCCATGCTCGGGAAATCACATAATTT-GTCTAAATAGTTTGTCTTTTTGTAAACAAGT
256 CAAACATTCCATGCTC-GG-AATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
10017758 TTTGGTCCTTGAATT
319 TTTGGTCCTTGAATT
* * * *
10017773 AATAACTTATTTATGTGAGAATTGGTTCTCT-GT-GTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
*
10017836 AACTTATTTACGTGAGTATTGTTT-TCTCCTAGTTCTTGGACGAACTT-ACAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAAC
* * * *
10017899 TTATTTACGTAAGAATTGTTTCTCT-TAGTTCTGGATGAACATCCGAACTTCTCAAAC-TTTAC-
131 TTATTTACGTAAGAATTGTTTCTCTCTTGTTCTTGAAGAACATCCGAACTTGTCAAACTTTTACA
* * * *
10017961 GATTTCTTTTTTAA-TTCGGTTCCAGAAAGTATTCAAGATGATCCATTATTTCTGCAATTTTTCG
196 GA-TTCTTTTATAACTTCAGTTCCAGAAAGTATTC-A-ATGATCCATTCTTTCTGCAATTTTTCA
* *
10018025 AACATTCCATGCTCAGGAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTGGTAAACAAGTTTT
258 AACATTCCATGCTC-GGAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
10018089 GGTCCTTGAATT
322 GGTCCTTGAATT
* * *
10018101 AAAAACTTATTTTATGTGA-AATTGTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAA
* * * *
10018165 AAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAA
10018230 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTCTTGAAGAACATCCGAACTTGTC-AACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTT-G-TTCTTGAAGAACATCCGAACTTGTCAAACTTTT
* * * *
10018294 ACAGGTTCTTTTATAACTTCAGTTCCA-AAAGTATTC-ATAATCCATTCCTTCTGGAATTTTTTC
193 ACAGATTCTTTTATAACTTCAGTTCCAGAAAGTATTCAATGATCCATTCTTTCTGCAA-TTTTTC
* * *
10018357 AAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
257 AAACATTCCATGCTCG-GAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
10018422 TGGTCTTTAAATT
321 TGGTCCTTGAATT
* * *
10018435 AAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTTCTTGTATGAACTTTCAAACTTGT
1 -AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACTTTCAAACTTGT
10018497 CAAACTTTCA
Statistics
Matches: 637, Mismatches: 63, Indels: 46
0.85 0.08 0.06
Matches are distributed among these distances:
328 58 0.09
329 51 0.08
330 87 0.14
331 46 0.07
332 164 0.26
333 92 0.14
334 43 0.07
335 86 0.14
336 10 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGTTCTTGAAGAACATCCGAACTTGTCAAACTTTTACA
GATTCTTTTATAACTTCAGTTCCAGAAAGTATTCAATGATCCATTCTTTCTGCAATTTTTCAAAC
ATTCCATGCTCGGAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
CTTGAATT
Found at i:10018620 original size:214 final size:210
Alignment explanation
Indices: 10018225--10018713 Score: 573
Period size: 214 Copynumber: 2.3 Consensus size: 210
10018215 AAAACTTGTC
* *
10018225 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTCTTGAAGAACATCCGAACTTGTC-AA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTCTTGAAGAACTTCCGAACTTGTCAAA
* * * **
10018289 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAGTATTCATAATCCATTCCTTCTGGAATTTT
66 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAGTATTCAAAATCCATTCC-TCTGAAAAATT
* * * * * *
10018354 TTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
130 TCCAAACATTCAATCCTCAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAG
* *
10018419 TTTTGGTCT-TTAAATT
195 TTTTAGACTGTT-AATT
* * * *
10018435 AAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTTCTTGTATGAACTTTCAAACTTGTCA
1 -AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTCTTG-AAGAACTTCCGAACTTGTCA
* * *
10018499 AACTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGT-TTCAAGAAGATCCATTCC-CTT
64 AACTTTCACAG-GTTCTTTTATAACTTCA-GTTCC-AAAAGTATTC-A-AA-ATCCATTCCTCTG
*
10018560 AACAAATTTCCAAACATTCAATCCTCAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
123 AA-AAATTTCCAAACATTCAATCCTCAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10018625 TAAACAAGTTTTAGACTGTTAATT
187 TAAACAAGTTTTAGACTGTTAATT
* *
10018649 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACA-AACTTCCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTCTT-GA-AGAACTTCCGAACTTGTCA
10018712 AA
64 AA
10018714 AACTTATTTA
Statistics
Matches: 236, Mismatches: 29, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
210 12 0.05
211 45 0.19
212 30 0.13
213 59 0.25
214 79 0.33
215 11 0.05
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (210 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTCTTGAAGAACTTCCGAACTTGTCAAA
CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAGTATTCAAAATCCATTCCTCTGAAAAATTT
CCAAACATTCAATCCTCAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGT
TTTAGACTGTTAATT
Found at i:10018749 original size:62 final size:62
Alignment explanation
Indices: 10018652--10018899 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10018642 GTTAATTAAT
* * *
10018652 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10018714 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10018776 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10018838 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10018900 CTTTTATAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10019165 original size:63 final size:62
Alignment explanation
Indices: 10019055--10019199 Score: 200
Period size: 63 Copynumber: 2.3 Consensus size: 62
10019045 TTGAATTAAT
* ** * * *
10019055 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATTGGTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAA
* *
10019117 AACTTATTTACGTGAGTATTGGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGG-TTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAA
*
10019180 AACTTATTTACGTAAGAATT
1 AACTTATTTACGTGAGAATT
10019200 CCTTCTCTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
62 20 0.28
63 52 0.72
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGGTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10019507 original size:62 final size:62
Alignment explanation
Indices: 10019388--10019575 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10019378 TCCTTGAATT
* *
10019388 AAAAACTTATTTAT-GTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTT-TCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * *
10019449 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAAC-TTCAAAACTTGTC
1 AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTTGTC
* * * * *
10019511 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
1 AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
10019573 AAA
1 AAA
10019576 CTTTTACAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
60 1 0.01
61 26 0.24
62 80 0.73
63 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
Found at i:10019628 original size:336 final size:337
Alignment explanation
Indices: 10018711--10019781 Score: 1473
Period size: 336 Copynumber: 3.2 Consensus size: 337
10018701 CGAACTTGTC
** * *
10018711 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * * * *
10018776 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAAC
65 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAAC
*
10018841 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10018906 TAATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTT
195 CAGTTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
10018971 CAAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
260 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGT
10019036 GTTTGGTCCTTGAATT
323 -TTTGGTCCTTGAATT
* * *
10019052 AATAACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AAAAACTTATTTATGTGAGAATT-GTTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
*
10019117 AACTTATTTACGTGAGTATTGGTTTCTCTCCTAGTTCTTGGACGAACTT-ACGAACTTGTCAAAA
65 AACTTATTTACGTGAGTATT-GTTTCTCTCCTAGTTCTTGGACGAACTTCA-AAACTTGTCAAAA
** * * *
10019181 ACTTATTTACGTAAGAATT-CCT-TCTCTTAGTTC-TGGATGAACATCCGAACTTCTCAAACTTT
128 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTT
* * * * *
10019243 TAC-GATTTCTTTTTTAAATTCGGCT-CAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
193 TACAG-TTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATT
* *
10019306 TTTCGAACATTCCATGCTCAGGAAATCGCATAATTT-GTCTAAATAGTTTGTCTTTTGGTAAACA
257 TTTCAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTT-GTAAACA
10019370 AGTTTTGGTCCTTGAATT
320 AGTTTTGGTCCTTGAATT
*
10019388 AAAAACTTATTTATGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAA
1 AAAAACTTATTTATGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAA
* * * *
10019453 ACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAACT
66 ACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAACT
*
10019518 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
* * * *
10019583 AGGTTC-TTTATAACTTCAGTTCCA-AAAGTATTCAAGATAATCCATTCCTTCTGGAAATTTTTC
196 AGTTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTTC
* * *
10019646 AAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
261 AAACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTTT
* *
10019711 TGGTCTTTAAATT
325 TGGTCCTTGAATT
* * * * * *
10019724 AAAAACTTATTTACGT-TG-TTTG-TATCTCCTTGGTTCTTGTATGAACTTTCAAACTTGT
1 AAAAACTTATTTATGTGAGAATTGTTTTCT-CTTGGTTCTTGGACGAACTTTCAAACTTGT
10019782 CAAACTTTCA
Statistics
Matches: 649, Mismatches: 67, Indels: 35
0.86 0.09 0.05
Matches are distributed among these distances:
333 4 0.01
334 86 0.13
335 72 0.11
336 165 0.25
337 65 0.10
338 70 0.11
339 45 0.07
340 10 0.02
341 74 0.11
342 58 0.09
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (337 bp):
AAAAACTTATTTATGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAA
ACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
AGTTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTTC
AAACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTT
GGTCCTTGAATT
Found at i:10019887 original size:212 final size:214
Alignment explanation
Indices: 10019511--10020001 Score: 579
Period size: 212 Copynumber: 2.3 Consensus size: 214
10019501 AAAACTTGTC
* *
10019511 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* * ** *
10019576 CTTTTACAGGTTCTTTATAACTTCAGTTCCAAAAGTATTCAAGATAATCCATTCCTTCTGGAAAT
66 CTTTCACAGGTTCTTTATAACTTCAGTTCCAAAAGTATTCAAGATAATCCATTCCCTCTAAAAAA
* * * * *
10019641 TTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAAC
131 TTTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTTGTCATTTTGTAAAC
* *
10019705 AAGTTTTGGTCT-TTAAATT
196 AAGTTTTAGACTGTT-AATT
* * * * * *
10019724 AAAAACTTATTTACGT-TG-TTTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* *
10019786 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGA-AGATCCATTCCCT-TA
66 CTTTCACAG-GTTC-TTTATAACTTCA-GTTCC-AAAAGTATTCAAGATA-ATCCATTCCCTCTA
* *
10019847 AACAAATTTCCAAACATTCAATCCTCTAAAATCACATCATTTGGTGAAAATAGTTTTGTCATTTT
126 AA-AAATTTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTTGTCATTTT
10019912 GTAAACAAGTTTTAGACTGTTAATT
190 GTAAACAAGTTTTAGACTGTTAATT
* * * * *
10019937 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGA-AGAACATCCAAACTTGTCAA
10020001 A
65 A
10020002 AACTTATTTA
Statistics
Matches: 233, Mismatches: 33, Indels: 21
0.81 0.11 0.07
Matches are distributed among these distances:
209 1 0.00
210 39 0.17
211 26 0.11
212 66 0.28
213 61 0.26
214 3 0.01
215 8 0.03
216 29 0.12
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
CTTTCACAGGTTCTTTATAACTTCAGTTCCAAAAGTATTCAAGATAATCCATTCCCTCTAAAAAA
TTTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTTGTCATTTTGTAAAC
AAGTTTTAGACTGTTAATT
Found at i:10020166 original size:61 final size:62
Alignment explanation
Indices: 10019940--10020186 Score: 397
Period size: 62 Copynumber: 4.0 Consensus size: 62
10019930 GTTAATTAAT
* * *
10019940 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10020002 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10020064 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10020126 AACTTA-TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10020187 CTTTTATAAT
Statistics
Matches: 173, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
61 51 0.29
62 122 0.71
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10020520 original size:62 final size:61
Alignment explanation
Indices: 10020341--10020525 Score: 244
Period size: 61 Copynumber: 3.0 Consensus size: 61
10020331 TTGAATTAAT
* * * * *
10020341 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
* * * *
10020403 AACTTATTTACGTGAGTATTGTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
* * *
10020464 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
10020526 CTTTTACTAT
Statistics
Matches: 106, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 53 0.50
62 53 0.50
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
Found at i:10020661 original size:80 final size:80
Alignment explanation
Indices: 10020561--10020709 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
10020551 AGTTCCAAAA
* * * *
10020561 AGTATTCAAGATAATCCATTCCTTCT-AG-AATTTTTCGAACATTCCATGCTCGAAAAATCCCCA
1 AGTATTCAAGATAATCCATTCCTT-TAAGAAAATTTCCAAACATTCCATGCTCGAAAAAT-CACA
10020624 TCATTTTGGTTTCTTAT
64 TCATTTTGGTTTCTTAT
*
10020641 AGTATTCAAGA-AGATCCATTCCTTTAAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACAT
1 AGTATTCAAGATA-ATCCATTCCTTTAAGAAAATTTCCAAACATTCCATGCTCGAAAAATCACAT
10020705 CATTT
65 CATTT
10020710 GTTCAAAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
79 2 0.03
80 33 0.54
81 26 0.43
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (80 bp):
AGTATTCAAGATAATCCATTCCTTTAAGAAAATTTCCAAACATTCCATGCTCGAAAAATCACATC
ATTTTGGTTTCTTAT
Found at i:10020839 original size:62 final size:62
Alignment explanation
Indices: 10020760--10021007 Score: 390
Period size: 62 Copynumber: 4.0 Consensus size: 62
10020750 TTTAGTTAAT
* * *
10020760 AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10020822 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10020884 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTGCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10020946 AACTTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10021008 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
61 1 0.01
62 171 0.99
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10021264 original size:51 final size:52
Alignment explanation
Indices: 10021209--10021429 Score: 133
Period size: 61 Copynumber: 3.9 Consensus size: 52
10021199 TGGACGAACT
*
10021209 TTTGAAC-TTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTC
1 TTTGAACATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * ** * * *
10021260 TTTG-ACGAATAT-CCAAACCTGTTCACGTGAGAATTGTTTCTCTCTTGGTTC
1 TTTGAAC-ATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
*
10021311 TTGCATGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
1 TT---TGAA----C--A-TTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * *
10021373 TTGGCGAAATTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTG
1 TT--TG-AA---C--A-TTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
10021430 TTTATTGGAC
Statistics
Matches: 135, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
50 2 0.01
51 39 0.29
52 2 0.01
54 2 0.01
55 1 0.01
59 1 0.01
60 1 0.01
61 49 0.36
62 38 0.28
ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41
Consensus pattern (52 bp):
TTTGAACATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
Found at i:10021416 original size:61 final size:62
Alignment explanation
Indices: 10021284--10021521 Score: 320
Period size: 62 Copynumber: 3.9 Consensus size: 62
10021274 AAACCTGTTC
* * * *
10021284 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
10021346 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTCAAACTTGTCAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
* * * * *
10021407 ACGTGAGAATTGATTCTCTCTTGTTTATTGGAC-AAACATTCAAACTTGACAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAA-TTTCAAACTTGTCAAAAACTTATTT
* * * *
10021469 ATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCCGAACTTGTCAAA
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTTCAAACTTGTCAAA
10021522 CTTTTACGAT
Statistics
Matches: 155, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
61 58 0.37
62 94 0.61
63 2 0.01
64 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
Found at i:10021425 original size:123 final size:124
Alignment explanation
Indices: 10021284--10021521 Score: 336
Period size: 123 Copynumber: 1.9 Consensus size: 124
10021274 AAACCTGTTC
* * ** * * *
10021284 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTTACG
1 ACGTGAGAATTGATTCTCTCTTGGTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTACG
* *
10021349 TGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAA-ATTTCAAACTTGTCAAAAACTTATTT
66 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCCAAACTTGTCAAAAACTTATTT
* * *
10021407 ACGTGAGAATTGATTCTCTCTTGTTTATTGGACAAACATTCAAACTTGACAAAAACTTATTTATG
1 ACGTGAGAATTGATTCTCTCTTGGTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTACG
*
10021472 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
66 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10021522 CTTTTACGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
123 82 0.82
124 17 0.17
125 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (124 bp):
ACGTGAGAATTGATTCTCTCTTGGTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTACG
TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTT
Found at i:10021739 original size:62 final size:61
Alignment explanation
Indices: 10021674--10021861 Score: 272
Period size: 62 Copynumber: 3.0 Consensus size: 61
10021664 CCTTGAATTA
* * *
10021674 AAAAAGTTATTTACGTGA-AATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
*
10021735 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTC
* *
10021797 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTTC-TGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAAC-TTCGAACTTGTC
10021859 AAA
1 AAA
10021862 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
61 16 0.14
62 95 0.82
63 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10021741 original size:514 final size:514
Alignment explanation
Indices: 10020769--10021782 Score: 1700
Period size: 514 Copynumber: 2.0 Consensus size: 514
10020759 TAACTTACTT
*
10020769 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACG
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
*
10020834 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGA
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
* * * *
10020899 GAATTGTTTCTCTCTTTGTTCTTGGACGAACTTGCAAACTTGTCAAAAACTTATTTCAATAAGAA
131 GAATTGATTCTCTCTTTGTTATTGGACAAACTTGCAAACTTGACAAAAACTTATTTCAATAAGAA
10020964 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
196 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
*
10021029 CTCCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATTCCATGCT
261 CTCCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCT
* *
10021094 CGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
326 CGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
* *
10021159 AAAAACTTATTTACGTAAGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTGAAA
391 AAAAACTTATTTACGT-AGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
*
10021224 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAATATCCAAACCTGTTC
455 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAATATCCAAACCTGTTC
*
10021284 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTTACG
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
* *
10021349 TGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTCAAACTTGTCAAAAACTTATTTACGTGA
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
*
10021413 GAATTGATTCTCTC-TTGTTTATTGGACAAACATT-CAAACTTGACAAAAACTTATTT-ATGTAA
131 GAATTGATTCTCTCTTTG-TTATTGGACAAAC-TTGCAAACTTGACAAAAACTTATTTCA-ATAA
10021475 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTA
193 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTA
* *
10021540 TAACTTCGGTTCCAGA-AAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCA
258 TAACTCCGATTCCAGAGAA-TATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCA
*
10021604 TGCTCGGGAAATCACATAATTTAGTCTAAATAGTTTGTCT-TTTGGTAAACAAGTTTTGGTCCTT
322 TGCTCGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTT-GTAAACAAGTATTGGTCCTT
* *
10021668 GAATTAAAAAAGTTATTTACGT-GAAATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTT
386 GAATT-AAAAACTTATTTACGTAGAAA-TGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTT
* *
10021732 GTCAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
449 GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAA
10021783 CTTACGAACT
Statistics
Matches: 469, Mismatches: 23, Indels: 15
0.93 0.05 0.03
Matches are distributed among these distances:
513 13 0.03
514 348 0.74
515 108 0.23
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (514 bp):
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
GAATTGATTCTCTCTTTGTTATTGGACAAACTTGCAAACTTGACAAAAACTTATTTCAATAAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
CTCCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCT
CGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
AAAAACTTATTTACGTAGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAATATCCAAACCTGTTC
Found at i:10022350 original size:278 final size:276
Alignment explanation
Indices: 10021735--10022682 Score: 1324
Period size: 278 Copynumber: 3.4 Consensus size: 276
10021725 TGAACTTGTC
* * *
10021735 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAA
10021800 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTTC-TGGACGAACATCCGAACTTGTCAAACT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACATCCGAACTTGTCAAACT
* * *
10021864 TTTACGATTT-TTTTTTAACTTTGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCTAGCGA-T
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCTAGCAATT
* *
10021927 TTTCTAACATTCCATGCTCAGG-AAATCGCATAATTT-GTTTAAATAGTTTTCTTTTTTTAAACA
195 TTTCGAACATTCCATGCT-AGGAAAATCGCATAATTTGGTATAAATAGTTTTCTTTTTTTAAACA
10021990 AGTTTTGGT-TCTTGAATT
259 AGTTTTGGTCT-TTGAATT
* * * * *
10022008 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCCTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAA
* * * *
10022073 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
** * * *
10022138 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCAATT
* * * * * * *
10022203 TTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAACA
195 TTTCGAACATTCCATGCTAGGAAAATCGCATAATTTGGTATAAATAGTTT-TCTTTTTTTAAACA
*
10022268 AGTTTTGGTCTTTAAATT
259 AGTTTTGGTCTTTGAATT
10022286 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAT-TCCGAACTTGTCAA
* * *
10022350 AAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* *
10022415 TTTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCAAT
*
10022480 TTTTCGAACACTCCATGCTCA-GAAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTTTAAA
194 TTTTCGAACATTCCATGCT-AGGAAAATCGCATAATTTGGTATAAATAGTTT-TCTTTTTTTAAA
*
10022544 CAAGTTTTGGTCCTTGAATT
257 CAAGTTTTGGTCTTTGAATT
* * *
10022564 AAAAACTTATTTATGTGAGAATTAG-TTCTCTCTCGGTTCTTGGAC-AAACTT-TGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAA-TTCCGAACTTGTCA
* * * *
10022626 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
64 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
10022683 ATTCAAAAAC
Statistics
Matches: 595, Mismatches: 68, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
272 3 0.01
273 125 0.21
274 29 0.05
275 17 0.03
276 30 0.05
277 74 0.12
278 314 0.53
279 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (276 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTT
TTCGAACATTCCATGCTAGGAAAATCGCATAATTTGGTATAAATAGTTTTCTTTTTTTAAACAAG
TTTTGGTCTTTGAATT
Found at i:10022358 original size:62 final size:62
Alignment explanation
Indices: 10022286--10022412 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10022276 TCTTTAAATT
* * * * *
10022286 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
*
10022348 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
10022410 AAA
1 AAA
10022413 CTTTTACTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
Found at i:10022808 original size:61 final size:61
Alignment explanation
Indices: 10022564--10022810 Score: 311
Period size: 61 Copynumber: 4.0 Consensus size: 61
10022554 TCCTTGAATT
* * * ***
10022564 AAAAACTTATTTATGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAAAC-TTTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10022625 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAT-TC
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCAAACT-TGTC
* * **
10022687 AAAAACTTATTTACGTGAGAATTGTT-TCTCTTTGTTCTTGGATGTTCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * *
10022747 AAAAACTTATTTACGTAAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10022808 AAA
1 AAA
10022811 CTTTTACGAT
Statistics
Matches: 161, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
59 1 0.01
60 53 0.33
61 76 0.47
62 30 0.19
63 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10022907 original size:398 final size:401
Alignment explanation
Indices: 10022286--10024698 Score: 1902
Period size: 398 Copynumber: 6.0 Consensus size: 401
10022276 TCTTTAAATT
* *
10022286 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * **
10022351 AACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATT-GTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * *
10022416 TTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
130 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * * * *
10022481 TTTCGAACACTCCATGCTCAGAAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTTTAAACA
195 TTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
* * * *
10022546 AGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAA
260 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
*
10022611 ACTTT-GAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
325 ACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
10022675 TCCAAAC-TATTC
390 TCCAAACTTA-TC
* ** *
10022687 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GTTCTTGGATGTTCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10022750 AACTTATTTACGTAAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTCAAACTTT
66 AACTTATTTACGTAAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTTT
* *
10022815 TACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTT
131 TACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTT
* * *
10022880 TTCAAACATTCCATGCTCGGGAAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTGAACAA
196 TTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAA
*
10022945 GTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
261 GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
* * * * *
10023010 CTTTCGAACTTGTGAAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTT
326 CTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
* * *
10023075 ACGAACTTGTC
391 CCAAACTTATC
* *
10023086 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * ** ** ** * * * **
10023149 AAC-T-TTTAC----GATTTCTT-T-TCTAAGTTCAGTTCCAAAAAGTAT-TCAAGATAATCCAT
66 AACTTATTTACGTAAGAATTGTTCTCTCTTGGTTC--TTGGACGAA-CATCCCAA-CTTGT-CA-
** * ** ** * * * ** *
10023205 TCCTTCTA-GAAAT-TTTTCGAACATTCCATGCT-C-GAAA-AATCCCATCATTTGGCTCC-TTA
125 AACTTTTACGATTTCTTTTATAAC-TT-C-TGTTCCAGAAAGTAT-TCA--AGAT-GATCCATT-
* * * * * *
10023264 AAGTATTCAAGAAGATTCATTCCTTTAAGCAAATTTCAAACATTCCATGCTCGAGAAATCACATC
182 --CT-TTC---TAG---CA----ATT-------TTTCAAACATTCCATGCTCGGGAAATCGCATA
* * * * * * * *
10023329 ATTTGTTCA-AAATAGTTTGTCATTTTGTAAACAAGTTTTTGGACTTTTAGTTAATAACTTAGTT
227 ATTTGGT-ATAAATAGTTTGTCTTTTTGTAAACAAG-TTTTGGTCCTTGAATTAAAAACTTATTT
*
10023393 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACG
290 ACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACG
*
10023458 TGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATC
355 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
* * * * * * *
10023505 AAAATCTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTAGGACGAACTTCCAAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10023570 AACTTATTTTCAATAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAACT
66 AACTTATTTAC-GTAAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACT
* *
10023635 TTTACGATTTCTTTTATAACTTC-GATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAA
129 TTTACGATTTCTTTTATAACTTCTG-TTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAA
* *
10023699 TTTTTCGAACATTCCATGCTC-GGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
193 TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAA
* * * *
10023763 CAAGTATTGGTCCTTGAATTAAAAGCCTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGAC
258 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * *
10023828 GAACTTTCGAACTTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAA
323 GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10023893 CATCC-AA---A-C
388 CTTCCAAACTTATC
* * * *
10023902 -----C-TGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10023961 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGACAGAAAC
66 AACTTATTTACGTAAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTC--AAAC
* **** * * *** * * ** **
10024026 TTATTTATGTAAGAATTGTT-T-CCCTCTTGGTTATTGGACGAA-CATCCGAACTTG-T-CAAAC
128 -T-TTTACG-ATTTCTT-TTATAACTTC-T-GTT-CCAGA--AAGTATTC-AAGATGATCCATTC
* * * * ** * ** * * **
10024086 TTT-TA-CGATTTCTTTTATAAC-TT-C-GGTTCCAGAAA--GTATTCAAGATGAT-TCAATCTT
183 TTTCTAGC-AATT-TTTCA-AACATTCCATGCTCGGGAAATCGCA-T-AATTTGGTATAAATAGT
* * * ** * *** * * *
10024143 TCTAGTAATTTTTCG--AAC-A-TTCCATGCT-CGGGAAAT-CGCA-TAAATTAGGCT-A-AA-T
243 T-T-GT-CTTTTT-GTAAACAAGTT--TTGGTCCTTGAATTAAAAACTTATTTACG-TGAGAATT
* * ** * * ** * * *
10024198 AGTTCGTCTTTTGG----TAAAC-AAGTTTTGGTCCTTGAATTAAAAACTTATTTAAGT-AAAAT
301 GGTTC-TCTCTTGGTTCTTGGACGAA-CTTTCGAACTTG--TCAAAAACTTATTTACGTGAGAAT
* * ** *
10024257 TGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTC
362 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
* * *
10024297 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10024362 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * *
10024427 TTACGA-TT-TTTTCTAACTT-TGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGAT
130 TTACGATTTCTTTTATAACTTCT-GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAAT
* * * * *
10024489 TTTTCTAACATTCCATTCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAAC
194 TTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAAC
* * * * *
10024554 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACG
259 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
* * * * * *
10024618 AACTTCCAAACTTGTCAAAAACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
324 AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
10024683 ATCCTAACTTGTC
389 TTCCAAACTTATC
10024696 AAA
1 AAA
10024699 CTTTTACGAT
Statistics
Matches: 1562, Mismatches: 320, Indels: 262
0.73 0.15 0.12
Matches are distributed among these distances:
388 2 0.00
389 11 0.01
390 75 0.05
391 93 0.06
392 29 0.02
393 43 0.03
394 51 0.03
395 43 0.03
396 43 0.03
397 45 0.03
398 259 0.17
399 190 0.12
400 17 0.01
401 168 0.11
402 115 0.07
403 40 0.03
404 20 0.01
407 1 0.00
411 4 0.00
415 1 0.00
418 60 0.04
419 176 0.11
421 7 0.00
422 2 0.00
423 4 0.00
424 5 0.00
425 5 0.00
426 7 0.00
427 12 0.01
428 17 0.01
429 9 0.01
430 1 0.00
431 7 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTT
TTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAA
GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
CTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CCAAACTTATC
Found at i:10023063 original size:62 final size:62
Alignment explanation
Indices: 10022962--10023150 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
10022952 TCCTTGAATT
* * *
10022962 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
* * * * *
10023024 AAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
* * *
10023086 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
10023148 AAA
1 AAA
10023151 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
Found at i:10023323 original size:78 final size:78
Alignment explanation
Indices: 10023184--10023333 Score: 207
Period size: 78 Copynumber: 1.9 Consensus size: 78
10023174 TCAGTTCCAA
* *
10023184 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
1 AAAGTATTCAAGATAATCCATTCCTTCTAGAAA-TTTTCAAACATTCCATGCTCGAAAAATCACA
10023249 TCATTTGGCTCCTT
65 TCATTTGGCTCCTT
* *
10023263 AAAGTATTCAAGA-AGATTCATTCCTT-TAAGCAAA-TTTCAAACATTCCATGCTCGAGAAATCA
1 AAAGTATTCAAGATA-ATCCATTCCTTCT-AG-AAATTTTCAAACATTCCATGCTCGAAAAATCA
10023325 CATCATTTG
63 CATCATTTG
10023334 TTCAAAATAG
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
78 36 0.56
79 25 0.39
80 3 0.05
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.33
Consensus pattern (78 bp):
AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTCAAACATTCCATGCTCGAAAAATCACAT
CATTTGGCTCCTT
Found at i:10023607 original size:63 final size:62
Alignment explanation
Indices: 10023384--10023632 Score: 354
Period size: 62 Copynumber: 4.0 Consensus size: 62
10023374 TTTAGTTAAT
* * * *
10023384 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10023446 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10023508 ATCTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTAGGACGAACTTCCAAACTTGTAAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10023570 AACTTATTTTCAATAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTAC-ATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10023633 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 20, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
62 121 0.73
63 45 0.27
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10023891 original size:62 final size:62
Alignment explanation
Indices: 10023790--10024084 Score: 351
Period size: 62 Copynumber: 4.9 Consensus size: 62
10023780 ATTAAAAGCC
* * * *
10023790 TATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10023852 TATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAACA-T----C----C--AAACC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10023903 TGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10023965 TATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGACAGAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * * * *
10024027 TATTTATGTAAGAATTGTTTCCCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10024085 CTTTTACGAT
Statistics
Matches: 195, Mismatches: 27, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
51 42 0.22
52 1 0.01
56 1 0.01
57 1 0.01
60 1 0.01
61 1 0.01
62 148 0.76
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (62 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
Found at i:10023990 original size:113 final size:113
Alignment explanation
Indices: 10023792--10024008 Score: 371
Period size: 113 Copynumber: 1.9 Consensus size: 113
10023782 TAAAAGCCTA
*
10023792 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACTTATTT
1 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
* *
10023857 ACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAACATCCAAACCTG
66 ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
* * *
10023905 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTT
1 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
*
10023970 ACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACAT
66 ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACAT
10024009 TCGAACTTGA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (113 bp):
TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
Found at i:10024303 original size:452 final size:452
Alignment explanation
Indices: 10023452--10024345 Score: 1395
Period size: 452 Copynumber: 2.0 Consensus size: 452
10023442 CAAAAACTTA
*
10023452 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAAATCTTATTT
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAAAACTTATTT
* *
10023517 ACATGAGAATTGTTTCTCTCTTTGTTCTAGGACGAACTTCCAAACTTGTAAAAAACTTATTTTCA
66 ACATGAGAATTGCTTCTCTCTTGGTTCTAGGACGAACTTCCAAACTTGTAAAAAACTTATTTT-A
* *
10023582 ATAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCT
130 ATAAGAATTGTTTCCCTCTCGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCT
* *
10023647 TTTATAACTTCGATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATT
195 TTTATAACTTCGATTCCAGAAAGTATTCAAGATGATCCAATCTTTCTAGTAATTTTTCGAACATT
* * *
10023712 CCATGCTCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCCT
260 CCATGCTCGGAAATCGCATAATTAGGTCTAAATAGTTCGTCTTTTGGTAAACAAGTATTGGTCCT
* *
10023777 TGAATTAAAAGCCTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
325 TGAATTAAAAACCTATTTAAGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
* *
10023842 GTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAACATCCAAACCTG
390 GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
* * * *
10023905 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTT
1 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAAAACTTATTT
* * * *
10023970 ACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATT-CGAACTTG-ACAGAAACTTA-TTT
66 ACATGAGAATTGCTTCTCTCTTGGTTCTAGGACGAAC-TTCCAAACTTGTA-AAAAACTTATTTT
* * *
10024032 ATGTAAGAATTGTTTCCCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
129 A-ATAAGAATTGTTTCCCTCTCGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATTT
* *
10024097 CTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATTCAATCTTTCTAGTAATTTTTCGAACA
193 CTTTTATAACTTCGATTCCAGAAAGTATTCAAGATGATCCAATCTTTCTAGTAATTTTTCGAACA
*
10024162 TTCCATGCTCGGGAAATCGCATAAATTAGG-CTAAATAGTTCGTCTTTTGGTAAACAAGTTTTGG
258 TTCCATGCTC-GGAAATCGCAT-AATTAGGTCTAAATAGTTCGTCTTTTGGTAAACAAGTATTGG
* *
10024226 TCCTTGAATTAAAAACTTATTTAAGTAA-AATTGGTTCTCTCTTTGTTCTTGGACGAAC-TTCTG
321 TCCTTGAATTAAAAACCTATTTAAGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC-G
* *
10024289 AACTTGTCAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
385 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAAC
10024346 TTACGAACTT
Statistics
Matches: 403, Mismatches: 32, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
451 4 0.01
452 216 0.54
453 175 0.43
454 8 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (452 bp):
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAAAACTTATTT
ACATGAGAATTGCTTCTCTCTTGGTTCTAGGACGAACTTCCAAACTTGTAAAAAACTTATTTTAA
TAAGAATTGTTTCCCTCTCGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTT
TTATAACTTCGATTCCAGAAAGTATTCAAGATGATCCAATCTTTCTAGTAATTTTTCGAACATTC
CATGCTCGGAAATCGCATAATTAGGTCTAAATAGTTCGTCTTTTGGTAAACAAGTATTGGTCCTT
GAATTAAAAACCTATTTAAGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
Found at i:10024336 original size:62 final size:60
Alignment explanation
Indices: 10024236--10024423 Score: 259
Period size: 62 Copynumber: 3.0 Consensus size: 60
10024226 TCCTTGAATT
* * * *
10024236 AAAAACTTATTTAAGTAAAATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
*
10024297 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTC
* * *
10024359 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10024421 AAA
1 AAA
10024424 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
61 14 0.12
62 98 0.86
63 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10024649 original size:61 final size:62
Alignment explanation
Indices: 10024573--10024698 Score: 155
Period size: 61 Copynumber: 2.0 Consensus size: 62
10024563 TCCTTGAATT
* * * * * *
10024573 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACGAACTTCCAAACTTGTC
1 AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
* * * *
10024634 AAAAACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTC
1 AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
10024696 AAA
1 AAA
10024699 CTTTTACGAT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
61 29 0.54
62 25 0.46
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
Found at i:10024659 original size:337 final size:338
Alignment explanation
Indices: 10023905--10024698 Score: 1119
Period size: 337 Copynumber: 2.3 Consensus size: 338
10023895 TCCAAACCTG
* *
10023905 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTT
1 TTTACGTGAGAATTGTTTCTCTCTTGG-TCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
* * * *
10023970 ACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGACAGAAACTTATTTATG
65 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACTTATTTACG
* *
10024035 TAAGAATTGTTTCCCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTT
129 TAAGAATTGTTTCCCTCTTGGCTACTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTT
* * *
10024100 TTATAACTTCGGTTCCAGAAAGTATTCAAGATGATTCAATCTTTCTAGTAATTTTTCGAACATTC
194 TTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCAATCTTTCTAGCAATTTTTCGAACATTC
*
10024165 CATGCTCGGGAAATCGCATAAATTAGGCTAAATAGTTCGTCTTTTGGTAAACAAGTTTTGGTCCT
259 CATGCTCAGGAAATCGCATAAATTAGGCTAAATAGTTCGTCTTTTGGTAAACAAGTTTTGGTCCT
10024230 TGAATTAAAAACTTA
324 TGAATTAAAAACTTA
* * * * *
10024245 TTTAAGT-AAAATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATTT
1 TTTACGTGAGAATTGTTTCTCTC-TTGGTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
*
10024309 ACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTTACG
65 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAAAACTTATTTACG
* *
10024374 TAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTCAAACTTTTACGA-TT-TT
129 TAAGAATTGTTTCCCTCTTGGCTACTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTT
* * * * * *
10024437 TTCTAACTTTGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGATTTTTCTAACATTC
194 TTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCAATCTTTCTAGCAATTTTTCGAACATTC
* * * ** *
10024502 CATTCTCAGGAAATCGCAT-AATTTGGTTTAAATAGTTTTTCTTTTTGTAAACAAGTTTTGGTCC
259 CATGCTCAGGAAATCGCATAAATTAGG-CTAAATAGTTCGTCTTTTGGTAAACAAGTTTTGGTCC
10024566 TTGAATTAAAAACTTA
323 TTGAATTAAAAACTTA
* * * * * * *
10024582 TTTACGTGAGAGTTGTTTCTTTCCTGGTCTTAGACGAACTTCCAAACTTGTCAAAAACTTCTGTA
1 TTTACGTGAGAATTGTTTCTCTCTTGGTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTA
* * * *
10024647 CGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAA
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10024699 CTTTTACGAT
Statistics
Matches: 400, Mismatches: 49, Indels: 13
0.87 0.11 0.03
Matches are distributed among these distances:
336 6 0.01
337 210 0.52
338 16 0.04
339 159 0.40
340 9 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (338 bp):
TTTACGTGAGAATTGTTTCTCTCTTGGTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACTTATTTACGTA
AGAATTGTTTCCCTCTTGGCTACTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTT
ATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCAATCTTTCTAGCAATTTTTCGAACATTCCA
TGCTCAGGAAATCGCATAAATTAGGCTAAATAGTTCGTCTTTTGGTAAACAAGTTTTGGTCCTTG
AATTAAAAACTTA
Found at i:10024922 original size:62 final size:62
Alignment explanation
Indices: 10024850--10024976 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
10024840 TCTTTAAATT
* * *
10024850 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
10024912 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
10024974 AAA
1 AAA
10024977 CTTTTACTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
Found at i:10025007 original size:278 final size:277
Alignment explanation
Indices: 10024297--10025253 Score: 1346
Period size: 277 Copynumber: 3.5 Consensus size: 277
10024287 TGAACTTGTC
* *
10024297 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10024362 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10024427 TTACGA-TT-TTTTCTAACTTTGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * *
10024490 TTTCTAACATTCCATTCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
10024555 AGTTTTGGTCCTTGAATT
261 AGTTTTGGT-CTTGAATT
* * * * *
10024573 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
10024637 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
** * * *
10024702 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * * * *
10024767 TTTCGAACATTCCATGCTTTGAAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAACA
196 TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
*
10024832 AGTTTTGGTCTTTAAATT
261 AGTTTTGGTC-TTGAATT
*
10024850 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAA
10024914 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
* ** *
10024979 TTTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCAAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
* * * *
10025044 TTTTCGAACACTCCATGCTTAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTTTAAAC
195 TTTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAAC
10025109 AAGTTTTGGTCTTGAATT
260 AAGTTTTGGTCTTGAATT
* * * ** * **
10025127 AAAAACTTATTTATGTGAGAATTGGTTCTCCCTCAGTTCTTGGAAGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10025192 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
10025254 AACTTATTTA
Statistics
Matches: 596, Mismatches: 79, Indels: 11
0.87 0.12 0.02
Matches are distributed among these distances:
275 90 0.15
276 35 0.06
277 267 0.45
278 204 0.34
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
AGTTTTGGTCTTGAATT
Found at i:10025308 original size:61 final size:62
Alignment explanation
Indices: 10025127--10025376 Score: 313
Period size: 62 Copynumber: 4.0 Consensus size: 62
10025117 GTCTTGAATT
* * * ** * * ***
10025127 AAAAACTTATTTATGTGAGAATTGGTTCTCCCTCAGTTCTTGGAAGAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10025189 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * **
10025251 AAAAACTTATTTACGTGAGAATT-TTTCTCTCTTTGTTCTTTGATGTTCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * *
10025312 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10025374 AAA
1 AAA
10025377 CTTTTACTAT
Statistics
Matches: 162, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
61 54 0.33
62 108 0.67
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10025548 original size:400 final size:401
Alignment explanation
Indices: 10024850--10025715 Score: 1330
Period size: 400 Copynumber: 2.2 Consensus size: 401
10024840 TCTTTAAATT
* *
10024850 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCAAACTTGTCAAA
*
10024915 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCCAACTTGTCAAACTT
*
10024980 TTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCAAGCAATT
131 TTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCAACCAATT
* *
10025045 TTTCGAACACTCCATGCTTAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTTTAAACA
196 TTTCGAACACTCCATGCTCAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTGTAAACA
* *
10025110 AGTTTTGGTCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCCCTCAGTTCTTGGA-AGA
261 AGTTTTGGTCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTCAGTTCTTGGACA-A
* * *
10025174 ACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
325 ACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACT
*
10025239 TCCAAACTTGTC
390 TCCAAACATGTC
* * * *
10025251 AAAAACTTATTTACGTGAGAATT-TTTCTCTCTTTGTTCTTTGATG-TTCATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAT-ATCCAAACTTGTCAA
* * *
10025314 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTCAAACT
65 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCCAACTTGTCAAACT
* *
10025379 TTTACTATTTCTTTTATAACTTC-GTT-CTAGAAAGTATTCAAGATGATCCATTCTTTCTACCAA
130 TTTACTATTTCTTTTATAACTTCGGTTCCT-GAAAGTATTCAAGACGATCCATTCTTTCAACCAA
* * * * *
10025442 TTTTTCGAACATTCCATGCTCGGGAAATCGCTTAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
194 TTTTTCGAACACTCCATGCTCAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTGTAAA
* **
10025507 CAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
259 CAAGTTTTGGT-CTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTCAGTTCTTGGAC
* * * *
10025572 AAACTTTCGAACTTGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGTACGAA
323 AAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAA
10025637 CTTCCAAACATGTC
388 CTTCCAAACATGTC
* *
10025651 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACT-TCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCAAACTTGTCAA
10025715 A
65 A
10025716 CTTTTGCGAG
Statistics
Matches: 419, Mismatches: 39, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
398 2 0.00
399 104 0.25
400 257 0.61
401 55 0.13
403 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (401 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCAAACTTGTCAAA
AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCCAACTTGTCAAACTT
TTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCAACCAATT
TTTCGAACACTCCATGCTCAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTGTAAACA
AGTTTTGGTCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTCAGTTCTTGGACAAA
CTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTT
CCAAACATGTC
Found at i:10025628 original size:62 final size:62
Alignment explanation
Indices: 10025527--10025715 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
10025517 TCCTTAAATT
* * * * *
10025527 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10025589 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGTACGAACTTCCAAACATGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
10025651 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
10025713 AAA
1 AAA
10025716 CTTTTGCGAG
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10025929 original size:62 final size:62
Alignment explanation
Indices: 10025855--10025981 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
10025845 TCTTTAAATT
* * *
10025855 AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATATCCGAACTTGTC
1 AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10025917 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10025979 AAA
1 AAA
10025982 CTTTTACTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10026198 original size:278 final size:266
Alignment explanation
Indices: 10025589--10026259 Score: 860
Period size: 278 Copynumber: 2.5 Consensus size: 266
10025579 CGAACTTGTG
* * * * *
10025589 AAAAACTTATTTACGTGAGTATTGTTTCTCTC-CTAGTTCTTGTACGAACTTCCAAACATGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTC-GGTTCTTGGACGAACTTCCGAACTTGTCAA
*
10025653 AAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * *
10025718 TTTGCGAGTTCTTTTATATCTTCGGTTCCAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
130 TTTACGAGTTCTTTTATAACTTCGGTTCCAAAAGTATTCAAGACAATCCATTCCTTCGAGAAATT
* * * *
10025783 TTTCGAACATTCCATGCCATCATTTGGTCTAAATTGTTTGGCATTTTGTAAACAAGTTTTGGTCT
195 TTTCGAACACTCCATGCCATCATTTGGTATAAATAGTTTGGCATTTTGTAAACAAGTTTTGGTCC
10025848 TTAAATT
260 TTAAATT
* * * *
10025855 AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-TATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACT-TCCGAACTTGTCAA
* *
10025919 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACT
* * * * * * *
10025984 TTTACTATTTCTTTTATAACTTCTGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAAT
130 TTTACGAGTTCTTTTATAACTTCGGTTCC-AAAAGTATTCAAGACAATCCATTCCTTCGAGAAAT
* *
10026049 TTTTCGAACACTCCATGCTCGGGAAATCGTATAATTTGGTATAAATAGTTTGTCTTTTTGTAAAC
194 TTTTCGAACACTCCATGC-C-----ATC-----ATTTGGTATAAATAGTTTGGCATTTTGTAAAC
*
10026114 AAGTTTTGGTCCTTGAATT
248 AAGTTTTGGTCCTTAAATT
* * * **
10026133 AAAAACTTATTTATGTGAGAATTGGTTCTGTCTCGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10026198 AACTTATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10026260 AACTTATTTA
Statistics
Matches: 346, Mismatches: 44, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
265 1 0.00
266 138 0.40
267 46 0.13
268 1 0.00
273 3 0.01
278 156 0.45
279 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (266 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCAAAAGTATTCAAGACAATCCATTCCTTCGAGAAATTT
TTCGAACACTCCATGCCATCATTTGGTATAAATAGTTTGGCATTTTGTAAACAAGTTTTGGTCCT
TAAATT
Found at i:10026204 original size:62 final size:62
Alignment explanation
Indices: 10026133--10026383 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
10026123 TCCTTGAATT
** * * * * ***
10026133 AAAAACTTATTTATGTGAGAATTGGTTCTGTCTCGGTTCTTGGACGAACTTTTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10026195 AAAAACTTATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10026257 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * *
10026319 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10026381 AAA
1 AAA
10026384 CTTTTACGAT
Statistics
Matches: 170, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 170 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10026603 original size:402 final size:403
Alignment explanation
Indices: 10025855--10027544 Score: 2137
Period size: 402 Copynumber: 4.2 Consensus size: 403
10025845 TCTTTAAATT
* * * *
10025855 AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10025920 AACTTATTTAC-GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
66 AACTTATTTACAGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACT
* * * *
10025984 TTTACTATTTCTTTTATAACTTCTGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAAT
131 TTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAAT
* * *
10026049 TTTTCGAACACTCCATGCTCGGGAAATCGTATAATTTGGTATAAATAGTTTGTCTTTTTGTAAAC
196 TTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* * *
10026114 AAGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTGTCTCGGTTCTTGGACG
261 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
* * *
10026179 AACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAAC
326 AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
10026244 TTCCAAACTTGTC
391 TTCCAAACTTATC
* * * *
10026257 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10026322 AACTTATTTAC-GTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACT
66 AACTTATTTACAGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACT
*
10026386 TTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAAT
131 TTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAAT
* *
10026451 TTTTCGAACATTCCATGCTCAGGAAATCGTATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
196 TTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* *
10026516 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTCGTTCTCTCTTGGTTCTTGGATG
261 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
* * * * *
10026581 AACTTTCGAACTTGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAAC
326 AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
10026646 TTACGAACTTGTC
391 TTCCAAACTTATC
* * *
10026659 AAAAACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*** * ** * * ***** * * * *
10026724 CTTTTATGATTTCTTTTATAACTTCAG-TTC-CAAAAAG-TATT-CAAGATA-ATCC-ATTCCT-
66 AACTTAT--TTACAGTAAGAA-TT--GTTTCTCTCTTGGTTATTGGACGA-ACATCCGA-ACTTG
* * *** * * **
10026782 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTTCCTTAAAGTATTCAA
124 TC-A-AACTTTTACG---ATT---T-CTTTTATAA---C-T--TCT-GTTCCAGAAAGTATTCAA
* * * * * * * * **
10026847 GAAGATCCATTCCTTT-AAGCAAATTTACAAACATTCCATGCTCGAGAAATCACATCATTTTTTC
173 GATGATCCATT-CTTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTC
* * * * * * * *
10026911 AAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTTAGTTAATAACTTAGTTACGTGAGAAT
237 TAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAAT
*
10026976 TGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGT
302 TGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGT
10027041 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
367 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
* * *
10027078 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10027143 AACTTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACT
66 AACTTATTTACAGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACT
* * *
10027207 TTTACGATTTCTTTTATATCTTC-GATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAA
131 TTTACGATTTCTTTTATAACTTCTG-TTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAA
10027271 TTTTTC-AATCATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
195 TTTTTCGAA-CATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* *
10027335 ACAAGTATTGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGA
259 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * *
10027400 TGAACTTTCGAACTTGTGAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
324 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10027465 ACATCCAAACCTATC
389 ACTTCCAAACTTATC
*
10027480 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10027545 CTTTTACGAT
Statistics
Matches: 1094, Mismatches: 159, Indels: 70
0.83 0.12 0.05
Matches are distributed among these distances:
401 7 0.01
402 706 0.65
403 4 0.00
404 13 0.01
405 18 0.02
406 5 0.00
407 3 0.00
408 4 0.00
409 4 0.00
410 1 0.00
411 1 0.00
412 5 0.00
413 4 0.00
414 3 0.00
415 5 0.00
416 18 0.02
417 11 0.01
418 5 0.00
419 273 0.25
420 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (403 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
AACTTATTTACAGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACT
TTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAAT
TTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCAAACTTATC
Found at i:10026636 original size:62 final size:62
Alignment explanation
Indices: 10026535--10026723 Score: 265
Period size: 62 Copynumber: 3.0 Consensus size: 62
10026525 TCCTTGAATT
* *
10026535 AAAAACTTATTTACGTGAGAATTCG-TTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
* * *
10026597 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
* * * *
10026659 AAAAACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACAT-CTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAC-GAACTTGTC
10026721 AAA
1 AAA
10026724 CTTTTATGAT
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
61 2 0.02
62 111 0.98
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
Found at i:10026830 original size:340 final size:340
Alignment explanation
Indices: 10024573--10026830 Score: 1685
Period size: 340 Copynumber: 6.7 Consensus size: 340
10024563 TCCTTGAATT
* * * * * *
10024573 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCT-GGTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10024637 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10024702 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* * * * *
10024767 TTTCGAACATTCCATGCTTTG-AAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAAC
196 TTTCGAACATTCCATGC-TCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
*
10024831 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 AAGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10024896 AA-TATCCGAACTTGTC
325 AACT-TCCGAACTTGTC
* * * * *
10024912 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * *
10024975 AAC-T-TTTAC-T---ATTTCTTT-TATAACTTCGGTTCCTGAAAGTATTCAAGACGATCC-ATT
66 AACTTATTTACGTAAGAATTGTTTCTCT--CTT-GGTTCTTG---G-A--CGA-AC-ATCCGA-A
* * *** ** * * * *
10025032 CTT-TCAAGCAATTTTTCGAACAC-TCCAT-GCTT-AGGAAATCGC-ATAAGT-TGGT-ATAAAT
119 CTTGTCAA--ACTTTTACGATTTCTTTTATAACTTCA-G--TTC-CAAAAAGTAT--TCA-AGAT
* *** * * * * ** ** * * *
10025090 AGTTTGTCTTTTTTTAAACAAGTTTT-GGTC-TTGAAT--T--AAAAA---C-TTATTTATGT-G
175 AATCCAT-TCTTTCTAGA-AATTTTTCGAACATTCCATGCTCGAAAAATCCCATAATTT-GGTCT
* * * * * * ** * *
10025144 AGAATTGGTTCTCCCTCAGTTCTTG-GAAGAACTTTT-GAACTT--GTCAAAAACTTATTTACAT
237 A-AA-TAGTT-T--GTC--TTTTTGTAAACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACAT
*
10025205 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
295 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * **
10025251 AAAAACTTATTTACGTGAGAATT-TTTCTCTCTTTGTTCTTTGATGTTCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10025315 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * **
10025380 TTACTATTTCTTTTATAACTTC-GTTCTAGAAAGTATTCAAGATGATCCATTCTTTCTACCAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
** * *
10025444 TTTCGAACATTCCATGCTCGGGAAATCGCTTAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* * *
10025509 AGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAA
261 AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10025574 ACTTTCGAACTTGTG
326 ACTTCCGAACTTGTC
* * * * *
10025589 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGTACGAACTTCCAAACATGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10025654 AACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * *
10025719 TTGCGAGTTCTTTTATATCTTCGGTTCC-AAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* * *
10025783 TTTCGAACATTCCATGC-C-----AT--C---ATTTGGTCTAAATTGTTTGGCATTTTGTAAACA
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* * *
10025837 AGTTTTGGTCTTTAAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
261 AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10025902 A-TATCCGAACTTGTC
326 ACT-TCCGAACTTGTC
* * *
10025917 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * * * *
10025980 AAC-T-TTTAC-T---ATTTCTTT-TATAACTTCTGTTCCT-GA--AAGTATTCAAGAC--GATC
66 AACTTATTTACGTAAGAATTGTTTCTCT--CTT-GGTTCTTGGACGAA-CATCCGA-ACTTG-T-
** * * ** * * * ** ***
10026033 CATTCTTTCGAGCAATTT-TTCGA-ACACTCCATGCTCGGGAAATCGTATAATTTGGTATAAATA
124 CAAACTTT-TA-CGATTTCTTTTATA-ACTTCA-GTTC--CAAAAAGTAT--TCAAG-AT-AAT-
*** * * * ** * ** * * *
10026096 GTTTGTCTTTTTGTAAACAAGTTTT-GGTCCTTGAAT--T--AAAAA---C-TTATTTATGT-GA
178 CCAT-TC--TTTCTAGA-AATTTTTCGAACATTCCATGCTCGAAAAATCCCATAATTT-GGTCTA
* * * ** * *
10026151 GAATTGGTTCTGTCTCGGTTCTTG--GACGAACTTTT-GAACTT--GTCAAAAACTTATTTACAT
238 -AA-TAGTT-TGTCT---TT-TTGTAAAC-AAGTTTTGGTCCTTAAATTAAAAACTTATTTACAT
* *
10026211 GAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
295 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
10026257 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10026322 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * *
10026387 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* **
10026452 TTTCGAACATTCCATGCTC-AGGAAATCGTATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
196 TTTCGAACATTCCATGCTCGA-AAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* * *
10026516 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTCG-TTCTCTCTTGGTTCTTGGAT
260 AAGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATT-GTTTCTCTCTTGGTTCTTGGAC
* *
10026580 GAACTTTCGAACTTGTG
324 GAACTTCCGAACTTGTC
* * * * * *
10026597 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10026662 AACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* *
10026727 TTATGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
*
10026792 TTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGT
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGT
10026831 TCCTTAAAGT
Statistics
Matches: 1472, Mismatches: 305, Indels: 283
0.71 0.15 0.14
Matches are distributed among these distances:
319 5 0.00
320 10 0.01
321 13 0.01
322 11 0.01
323 8 0.01
324 5 0.00
325 1 0.00
326 10 0.01
327 1 0.00
328 156 0.11
329 2 0.00
330 3 0.00
331 10 0.01
332 16 0.01
333 15 0.01
334 36 0.02
335 37 0.03
336 30 0.02
337 36 0.02
338 135 0.09
339 282 0.19
340 433 0.29
341 35 0.02
342 37 0.03
343 42 0.03
344 27 0.02
345 20 0.01
346 24 0.02
347 16 0.01
348 11 0.01
349 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCGAACTTGTC
Found at i:10026881 original size:79 final size:79
Alignment explanation
Indices: 10026757--10026906 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 79
10026747 TCAGTTCCAA
* * *
10026757 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
1 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTACAAACATTCCATGCTCGAAAAATCACA
10026822 TCATTTGGTTCCTT
66 TCATTTGGTTCCTT
*
10026836 AAAGTATTCAAGA-AGATCCATTCCTT-TAAGCAAA-TTTACAAACATTCCATGCTCGAGAAATC
1 AAAGTATTCAAGATA-ATCCATTCCTTCT-AG-AAATTTTACAAACATTCCATGCTCGAAAAATC
10026898 ACATCATTT
63 ACATCATTT
10026907 TTTCAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
78 2 0.03
79 59 0.92
80 3 0.05
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (79 bp):
AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTACAAACATTCCATGCTCGAAAAATCACA
TCATTTGGTTCCTT
Found at i:10027036 original size:62 final size:62
Alignment explanation
Indices: 10026957--10027204 Score: 417
Period size: 62 Copynumber: 4.0 Consensus size: 62
10026947 TTTAGTTAAT
* * *
10026957 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10027019 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10027081 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10027143 AACTTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10027205 CTTTTACGAT
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 1 0.01
62 175 0.99
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10027453 original size:62 final size:62
Alignment explanation
Indices: 10027356--10027544 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
10027346 TCCTTGAATT
* * * * *
10027356 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * * * *
10027418 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10027480 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10027542 AAA
1 AAA
10027545 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10027599 original size:821 final size:821
Alignment explanation
Indices: 10026008--10027632 Score: 2630
Period size: 821 Copynumber: 2.0 Consensus size: 821
10025998 TATAACTTCT
* * * * * *
10026008 GTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAATTTTTCGAACACTCCATGCTCGGGA
1 GTTCCTGAAAGTATTCAAGAAGATCCATTCTTTCAAGCAAATTTACAAACACTCCATGCTCGAGA
** * *
10026073 AATCGTATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
66 AATCACATAATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACCTTGAATTAAAAA
* * * *
10026138 CTTATTTATGTGAGAATTGGTTCTGTCTCGGTTCTTGGACGAACTTTTGAACTTGTCAAAAACTT
131 CTTAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTT
*
10026203 ATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
196 ATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTATT
10026268 TACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTAC
261 TACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTAC
* *
10026333 GTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
326 ATAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCT
10026398 TTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATT
391 TTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATT
* *
10026463 CCATGCTCAGGAAATCGTATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCC
456 CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCC
*
10026528 TTGAATTAAAAACTTATTTACGTGAGAATTCGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACT
521 TTGAATTAAAAACTTATTTACGTAAGAATTCGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACT
* * * * * * *
10026593 TGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGT
586 TGTGAAAAACTTATTCACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACATACAAACCTAT
* *
10026658 CAAAAACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
651 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
*
10026723 ACTTTTATGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
716 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
10026788 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTG
781 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTG
* *
10026829 GTTCCTTAAAGTATTCAAGAAGATCCATTCCTTT-AAGCAAATTTACAAACATTCCATGCTCGAG
1 GTTCCTGAAAGTATTCAAGAAGATCCATT-CTTTCAAGCAAATTTACAAACACTCCATGCTCGAG
* ** * * * *
10026893 AAATCACATCATTTTTTCA-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTTAGTTAAT
65 AAATCACATAATTTGGT-ATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACCTTGAATTAAA
* *
10026957 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
129 AACTTAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
* *
10027022 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTA
194 TTATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTA
* * *
10027087 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
259 TTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTT
* *
10027152 -CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGATT
324 AC-ATAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATT
* *
10027216 TCTTTTATATCTTC-GATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTC-AA
388 TCTTTTATAACTTCTG-TTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAA
*
10027279 TCATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATT
452 -CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATT
*
10027344 GGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTC
516 GGTCCTTGAATTAAAAACTTATTTACGTAAGAATTCGTTCTCTCTTGGTTCTTGGATGAACTTTC
* * *
10027409 GAACTTGTGAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAA
581 GAACTTGTGAAAAACTTATTCACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACATACAAA
10027474 CCTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
646 CCTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
* * * *
10027539 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTT
711 GTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTT
*
10027604 CTAGTAATTTTTCGAACATTCCATGCTCG
776 CTAGAAATTTTTCGAACATTCCATGCTCG
10027633 GGAAATCACA
Statistics
Matches: 739, Mismatches: 60, Indels: 10
0.91 0.07 0.01
Matches are distributed among these distances:
820 4 0.01
821 730 0.99
822 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (821 bp):
GTTCCTGAAAGTATTCAAGAAGATCCATTCTTTCAAGCAAATTTACAAACACTCCATGCTCGAGA
AATCACATAATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACCTTGAATTAAAAA
CTTAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTT
ATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTATT
TACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTAC
ATAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCT
TTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATT
CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCC
TTGAATTAAAAACTTATTTACGTAAGAATTCGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACT
TGTGAAAAACTTATTCACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACATACAAACCTAT
CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTG
Found at i:10027636 original size:340 final size:339
Alignment explanation
Indices: 10027016--10028159 Score: 1740
Period size: 340 Copynumber: 3.4 Consensus size: 339
10027006 CGAACTTGTC
* * *
10027016 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10027081 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
* * *
10027146 TTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTT
131 TTATTTAC-GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * *
10027210 ACGATTTCTTTTATATCTTCGATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAATTTT
195 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTT
10027275 TCAATCATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
260 TCAA-CATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
*
10027340 TATTGGTCCTTGAATT
324 TTTTGGTCCTTGAATT
* * * *
10027356 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10027421 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
10027486 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
10027551 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTT
* * * * *
10027616 CGAACATTCCATGCTCGGGAAATCACATAA-TTAGTGTGAATAGTTTGTCTTTTGGTAAACAAGT
261 C-AACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
10027680 TTTGGTCCTTGAATT
325 TTTGGTCCTTGAATT
*
10027695 AAAAACTTATTTACGTGA-AATTGGTTCTCTCGTT-GTTCTTGGACGAACTTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
10027758 AAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
* *
10027823 CTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAATATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * * * **
10027888 ACGATTTTTTTTTTAACTTTGGTTCCTGAATGTATTCAAGATAATCCATTCTTTCTAGCGATTTT
195 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTT
* * *
10027953 TCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAACAAG
260 TC-AACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
10028018 TTTTGGTCCTTGAATT
324 TTTTGGTCCTTGAATT
* * * * *
10028034 AAAACCTTATTTACGTGAGAGTTGTTTCT-TCCTGCTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
10028098 AACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10028160 CTTTTACGAT
Statistics
Matches: 731, Mismatches: 67, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
338 245 0.34
339 209 0.29
340 274 0.37
341 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTT
CAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
TTGGTCCTTGAATT
Found at i:10027796 original size:62 final size:61
Alignment explanation
Indices: 10027695--10027882 Score: 272
Period size: 62 Copynumber: 3.0 Consensus size: 61
10027685 TCCTTGAATT
* * *
10027695 AAAAACTTATTTACGTGA-AATTGGTTCTCTCGTTGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTC-GAACTTGTC
10027756 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTT-CGAACTTGTC
* * *
10027818 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAA-TATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACT-T-CGAACTTGTC
10027880 AAA
1 AAA
10027883 CTTTTACGAT
Statistics
Matches: 117, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
61 19 0.16
62 97 0.83
63 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10028110 original size:61 final size:62
Alignment explanation
Indices: 10028034--10028159 Score: 164
Period size: 62 Copynumber: 2.0 Consensus size: 62
10028024 TCCTTGAATT
* * * * * * *
10028034 AAAACCTTATTTACGTGAGAGTTGTTTCT-TCCTGCTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGCTTCATGGACGAACATCCGAACTTGTC
* *
10028095 AAAAACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGCTTCATGGACGAACATCCGAACTTGTC
10028157 AAA
1 AAA
10028160 CTTTTACGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
61 24 0.44
62 31 0.56
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGCTTCATGGACGAACATCCGAACTTGTC
Found at i:10028352 original size:277 final size:278
Alignment explanation
Indices: 10027756--10028696 Score: 1350
Period size: 277 Copynumber: 3.4 Consensus size: 278
10027746 TGAACTTGTC
*
10027756 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10027821 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAATATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * * *
10027886 TTACGATTTTTTTTTTAACTTTGGTTCCTGAATGTATTCAAGATAATCCATTCTTTCTAGCGATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * *
10027951 TTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
10028016 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
* * *
10028034 AAAACCTTATTTACGTGAGAGTTGTTTCT-TCCTGCTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10028098 AACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * *
10028163 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * * * *
10028228 TTTCGAACATTCCATGCT-TGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACA
196 TTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
* * *
10028292 AGTTTTGGTCTTTAAAAT
261 AGTTTTGGTCCTTGAATT
* * * *
10028310 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATATCTGAACATGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACT-TCCGAACTTGTCAA
10028374 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* * ** * *
10028439 TTTACTATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCATGACGATTCATTCTTTCGAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
* * *
10028504 TTTTTGAACACTCCATGCTCGGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAAC
195 TTTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAAC
10028569 AAGTTTTGGTCCTTGAATT
260 AAGTTTTGGTCCTTGAATT
* * * * *
10028588 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-CT-GGTTCTTGGACGAACTTCCGAACTTGTCA
**
10028653 AAAACTTATTTATATGAA-AATTGTTTCTCTCTTGGTTCTTGGAC
64 AAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGAC
10028697 AAACTTCCAA
Statistics
Matches: 582, Mismatches: 74, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
276 83 0.14
277 324 0.56
278 111 0.19
279 1 0.00
280 58 0.10
281 5 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
AGTTTTGGTCCTTGAATT
Found at i:10028383 original size:62 final size:62
Alignment explanation
Indices: 10028310--10028436 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
10028300 TCTTTAAAAT
* * *
10028310 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCTGAACATGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACATGTC
* *
10028372 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACATGTC
10028434 AAA
1 AAA
10028437 CTTTTACTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACATGTC
Found at i:10028403 original size:678 final size:677
Alignment explanation
Indices: 10026840--10028436 Score: 1637
Period size: 678 Copynumber: 2.3 Consensus size: 677
10026830 TTCCTTAAAG
* *
10026840 TATTCAAGA-AGATCCATTCCTTTAAGCAAA-TTTACAAACATTCCATGCTCGAGAAATCACATC
1 TATTCAAGATA-ATCCATTCCTTT-AG-AAATTTTTCAAACATTCCATGCTAGA-AAATC-CATC
** * * * ** *
10026903 ATTTTTTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTTAGTTAATAACTTAGTTAC
61 ATTTGATC-AAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAAATAA-AACTTAATTAC
*
10026968 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCGAACTTGTCAAAAACTTATTTACGT
124 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATTCT-GAACTTGTCAAAAACTTATTTACGT
* *
10027032 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAG
187 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAG
* * *
10027097 AATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTCAATAAGAAT
252 AATTGTTTCTCTCCTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATTTCAATAAGAAT
* *
10027162 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATATC
317 TGTTTCTCTCTTGGCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATAAC
* *
10027227 TTCGATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAATCATTCCATGCTC
382 TTCGATTCCAGAGAGTATTCAAGATAATCCATTCTTTCTAGCAATTTTTCAATCATTCCATGCTC
*
10027292 GGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCCTTGAATTA
447 AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCCTTGAATTA
* * * * *
10027357 AAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGAAAA
512 AAAACTTATTTACGTAAGAATTGGTTCTCTCCTGCTTCTTGGACGAACTTCCGAACTTGTCAAAA
* * *
10027422 ACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATCAAAAACT
577 ACTTATTCACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCAAACCTATC-AAAACT
* * * **
10027487 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
641 TATTTAC---AGAATTCTTTCTATCTTGGTTC-T-CAAAAAC
* * ** ** * * * ** * * *
10027529 -ATCCGAA-CTTGT-CAAACTTTTACG-ATTTCTTTTATAAC-TTCGGTTCCAGAAAGT--ATTC
1 TATTC-AAGATAATCCATTCCTTTA-GAAATT-TTTCA-AACATTCCATGCTAGAAAATCCA-TC
** * * * * * * *** * *
10027587 AAGATGATC-CATTCTTTCTAGTAATTTT-TCGAAC-A-TTCCATGCTC-GGGAAAT--CACATA
61 -ATTTGATCAAATT-GTT-T-GTCATTTTGT-AAACAAGTT--TTGGTCTTTAAAATAAAACTTA
* * * * ** * * ** *
10027645 ATTA-GTGTGAATAGTTTGTCTTTTGG----TAAACAAGTTTTGGTCCTTGAATTAAAAACTTAT
119 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATTCT-GAACTTG--TCAAAAACTTAT
* *
10027705 TTACGTGA-AATTGGTTCTCTCGTT-GTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATTT
181 TTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
*
10027768 ACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTT-AC
245 ACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATTTCA-
* * *
10027832 GTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAA-TATCCGAACTTGTCAAACTTTTACGATTTT
309 ATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACT-TCCAAACTTGTCAAACTTTTACGATTTC
* * * * *
10027896 TTTTTTAACTTTGGTTCCTGA-ATGTATTCAAGATAATCCATTCTTTCTAGCGATTTTTCTAA-C
373 TTTTATAACTTCGATTCCAGAGA-GTATTCAAGATAATCCATTCTTTCTAGCAATTTTTC-AATC
* * *
10027959 ATTCCATGCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAACAAGTTTTGG
436 ATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGG
* * * *
10028024 TCCTTGAATTAAAACCTTATTTACGTGAGAGTTGTTTCT-TCCTGCTTCTTGGACGAACTTCCGA
501 TCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCCTGCTTCTTGGACGAACTTCCGA
*
10028088 ACTTGTCAAAAACTTATGT-ACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCGAAC
566 ACTTGTCAAAAACTTAT-TCACGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCAAAC
* * *
10028152 TTGTC-AAAC-T-TTTAC-GATTTCTTT-TATAACTTCGGTTC-CAAAAAC
630 CTATCAAAACTTATTTACAGAATTCTTTCTAT--CTT-GGTTCTCAAAAAC
* *
10028197 TATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGAAAATCCCATCATT
1 TATTCAAGATAATCCATTCCTT-TAGAAATTTTTCAAACATTCCATGCTAGAAAAT-CCATCATT
* *
10028262 TGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAAATAAAAACTTATTTACGTG
64 TGATC-AAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAAAT-AAAACTTAATTACGTG
* *
10028327 AGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCTGAACATGTCAAAAACTTATTTACGTAAGA
127 AGAATTGTTTCTCTCTTGGTTCTTGGACAAAT-TCTGAACTTGTCAAAAACTTATTTACGTGAGA
*
10028392 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
191 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10028437 CTTTTACTAT
Statistics
Matches: 717, Mismatches: 139, Indels: 115
0.74 0.14 0.12
Matches are distributed among these distances:
668 8 0.01
669 15 0.02
670 36 0.05
671 22 0.03
672 6 0.01
673 9 0.01
674 8 0.01
675 22 0.03
676 4 0.01
677 113 0.16
678 351 0.49
679 33 0.05
680 2 0.00
681 18 0.03
682 7 0.01
683 3 0.00
684 6 0.01
685 10 0.01
686 18 0.03
687 17 0.02
688 7 0.01
689 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (677 bp):
TATTCAAGATAATCCATTCCTTTAGAAATTTTTCAAACATTCCATGCTAGAAAATCCATCATTTG
ATCAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAAATAAAACTTAATTACGTGAGAA
TTGTTTCTCTCTTGGTTCTTGGACAAATTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGT
TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTC
TCTCCTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATTTCAATAAGAATTGTTTCTCT
CTTGGCTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCC
AGAGAGTATTCAAGATAATCCATTCTTTCTAGCAATTTTTCAATCATTCCATGCTCAGGAAATCG
CATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTATTGGTCCTTGAATTAAAAACTTAT
TTACGTAAGAATTGGTTCTCTCCTGCTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTCA
CGTAAGAATTGTGTCTCTCTTGGTTCATGGACGAACATCCAAACCTATCAAAACTTATTTACAGA
ATTCTTTCTATCTTGGTTCTCAAAAAC
Found at i:10028807 original size:61 final size:62
Alignment explanation
Indices: 10028588--10028839 Score: 292
Period size: 62 Copynumber: 4.0 Consensus size: 62
10028578 TCCTTGAATT
* * * * * * * *
10028588 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATT-GTT-TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
** * * **
10028652 AAAAACTTATTTATATGAA-AATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTACTC
1 AAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * *
10028714 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACATCCAAACTTGT-
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10028775 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10028837 AAA
1 AAA
10028840 CTTTTACGAT
Statistics
Matches: 161, Mismatches: 24, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
61 57 0.35
62 81 0.50
63 3 0.02
64 19 0.12
65 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10028811 original size:123 final size:126
Alignment explanation
Indices: 10028588--10028819 Score: 346
Period size: 123 Copynumber: 1.9 Consensus size: 126
10028578 TCCTTGAATT
* * * *
10028588 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACATCCAAACTTGTCA
*
10028653 AAAACTTATTTATATGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTACTC
66 AAAACTTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTACTC
** *
10028714 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTCTTTGTTCTTGGATGAACATCCAAACTTGT-A
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACATCCAAACTTGTCA
*
10028776 AAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGAC
66 AAAACTTATTTACATGAA-AATTGTTTCTCTCTTGGTTCTTGGAC
10028820 GAACATCCGA
Statistics
Matches: 96, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
122 2 0.02
123 40 0.42
124 29 0.30
125 3 0.03
126 22 0.23
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (126 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCTCGGTTCTTGAATGAACATCCAAACTTGTCA
AAAACTTATTTACATGAAAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTACTC
Found at i:10029148 original size:215 final size:217
Alignment explanation
Indices: 10028774--10029256 Score: 580
Period size: 215 Copynumber: 2.2 Consensus size: 217
10028764 TCCAAACTTG
* * ***
10028774 TAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAA
1 TAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACAAGTCAA
* * * * ** * * *
10028839 ACTTTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGC
66 ACTTTCACGAGTTCTTTCATAACCTAGGTTCCAGAAAGCATTCAAGACGATCCATTCTTTCGAGC
* * * * ** * *
10028904 AATTTTTCGAACATTCCTTGCTCGAGAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTG-T
131 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
*
10028968 AAACAAGTTTTGGCCT-TTAAAT
196 AAACAAGTTTTGGACTGTT-AAT
* * * * *
10028990 TAAAAACTTGTTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACAAGTCAA
1 TAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACAAGTCAA
** *
10029054 ACTTTCACGAGTTCTTTCATAACCTAGGTTCCTTAAAGCATTCAAGACGTTCCATTCCTTT-GAG
66 ACTTTCACGAGTTCTTTCATAACCTAGGTTCCAGAAAGCATTCAAGACGATCCATT-CTTTCGAG
*
10029118 CAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
130 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
10029183 CCAAACAAGTTTTGGACTGTTAAT
195 -CAAACAAGTTTTGGACTGTTAAT
* * *
10029207 TAATAACTTAG-TTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAAC
1 TAAAAACTT-GTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10029257 TTCCAAACTT
Statistics
Matches: 223, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
215 129 0.58
216 32 0.14
217 45 0.20
218 17 0.08
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (217 bp):
TAAAAACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACAAGTCAA
ACTTTCACGAGTTCTTTCATAACCTAGGTTCCAGAAAGCATTCAAGACGATCCATTCTTTCGAGC
AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
AAACAAGTTTTGGACTGTTAAT
Found at i:10029431 original size:61 final size:61
Alignment explanation
Indices: 10029211--10029457 Score: 350
Period size: 62 Copynumber: 4.0 Consensus size: 61
10029201 GTTAATTAAT
* * * * *
10029211 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTG-TCAA
*
10029273 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC-AA
* * * * **
10029335 AACATATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* *
10029396 AACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
10029457 A
1 A
10029458 CTTTTACGAT
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
61 59 0.35
62 108 0.65
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
Found at i:10029440 original size:123 final size:124
Alignment explanation
Indices: 10029220--10029457 Score: 372
Period size: 123 Copynumber: 1.9 Consensus size: 124
10029210 TAACTTAGTT
* *
10029220 ACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTTAAAAACTTATTTACG
1 ACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACATCCAAACTTGTTAAAAACTTATTTACC
*
10029285 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTC
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACATATTC
* * ** *
10029344 ACGTGAGAATTGTTTCTCTC-TAGGTTCTTGGACTAACATCTGAACTTG-TCAAAACTTATTTAC
1 ACGTGAGAATTGTTTCTCTCTTA-GCTCTTGGACGAACATCCAAACTTGTTAAAAACTTATTTAC
*
10029407 CTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
65 CTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10029458 CTTTTACGAT
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
123 64 0.62
124 40 0.38
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.37
Consensus pattern (124 bp):
ACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACATCCAAACTTGTTAAAAACTTATTTACC
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACATATTC
Found at i:10029795 original size:215 final size:216
Alignment explanation
Indices: 10029394--10029890 Score: 578
Period size: 215 Copynumber: 2.3 Consensus size: 216
10029384 TGAACTTGTC
* * * * *
10029394 AAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATCG-TTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
* * * * **
10029459 TTTTACGATTTCTTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
65 TTTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAAA
* * * * * * *
10029524 TTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
130 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10029588 ACAAGTTTTG-GCCTTTAAATTA
195 ACAAGTTTCGAGCC-TTAAATTA
* *
10029610 AAAACTTATTTACGTGAGAATCGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATCGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
* * * ** *
10029674 TTTCT-TGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
65 TTT-TACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10029737 AAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
127 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10029800 ACCAAACAAGTTTCGATCCTTGAATTA
191 A-CAAACAAGTTTCGAGCCTTAAATTA
10029827 AAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAACTTATTTACGTGAG-AATC-GTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10029891 GACTTATTTA
Statistics
Matches: 238, Mismatches: 32, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
214 3 0.01
215 127 0.53
216 30 0.13
217 42 0.18
218 36 0.15
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAACTTATTTACGTGAGAATCGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACT
TTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
CAAGTTTCGAGCCTTAAATTA
Found at i:10029927 original size:62 final size:62
Alignment explanation
Indices: 10029855--10030014 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10029845 AATCGGTTCT
* * * *
10029855 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTATTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* *
10029917 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* * * *
10029979 CTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10030015 CTTTGACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
Found at i:10030011 original size:618 final size:618
Alignment explanation
Indices: 10028372--10030014 Score: 2338
Period size: 618 Copynumber: 2.7 Consensus size: 618
10028362 TGAACATGTC
* * * * * *
10028372 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
* * * * * *
10028437 CTTT-TACT-ATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCATGACGATTCATT-CTTTCGA
65 CTTTCT--TGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GA
* *** * * * * * *
10028499 GCAATTTTTTGAACACTCCATGCTCGGGAAATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTT
127 GCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCA-AAATAGTTTGTCATTTT
* * * *
10028563 G--TAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTCTCGG
191 GACCAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCT-T-GG
* * * * *
10028626 TTCTTGAATGAACTTTCGAACTTGTCAAAAACTTATTTATATGAAAATTGTTTCTCTCTTGGTTC
254 TTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTC
* ** * *
10028691 TTGGACAAACTTCCAAACTACTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTG
319 TTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
10028756 GATGAACATCCAAACTTGTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
384 GATGAACATCCGAACTTGTCAAAACTTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
10028821 AACATCCGAATTTGTCAAACTTTTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGA
449 AACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCTGTACCAAAAAGTATTCAAGA
* * * * **
10028886 TGATCCATTCTTTCTAGCAATTTTTCGAACATTCCTTGCTCGAGAAATTGCATCATTTGGTCTAA
514 TAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAGAAATCCCATCATTTGGTCTAA
10028951 ATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
579 ATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
* **
10028991 AAAAACTTGTTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACAAGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
** * * *
10029056 TTTCACGAGTTCTTTCATAACCTAGGTTCCTTAAAGCATTCAAGACGTTCCATTCCTTTGAGCAA
66 TTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
10029121 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
131 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
* * * * * * *
10029186 AACAAGTTTTGGA--CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTT
196 AACAAG-TTTCGATCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
* * *
10029249 GGACGAACTTCCAAACTTGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
259 GGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
10029314 CGAACTTCCAAACTTGTCAAAAACATATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACT-
324 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TG
* *
10029378 AACATCTGAACTTGTCAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
388 AACATCCGAACTTGTCAAAACTTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
*
10029443 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTC-GATACCAAAAAGTATTCAAGTTAA
453 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCTG-TACCAAAAAGTATTCAAGATAA
* *
10029507 TCCATTCCTTCTAGAAATTTTTCGATCATTCCATGGTCG-GAAAATCCCATCATTTGGTCTAAAT
517 TCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAG-AAATCCCATCATTTGGTCTAAAT
10029571 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
581 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
* *
10029609 AAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
*
10029674 TTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAA
66 TTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
10029739 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
131 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
*
10029804 AACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTG
196 AACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTG
* * *
10029868 GACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGAC
260 GACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * *
10029933 GAACTTTCAAACTTGTCAAAAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
325 GAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
10029998 CATCCGAACTTGTCAAA
390 CATCCGAACTTGTCAAA
10030015 CTTTGACGAT
Statistics
Matches: 906, Mismatches: 103, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
617 9 0.01
618 814 0.90
619 38 0.04
620 41 0.05
621 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (618 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
TTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
AACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGG
ACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
ATCCGAACTTGTCAAAACTTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
GAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCTGTACCAAAAAGTATTCAAGATAATCCA
TTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAGAAATCCCATCATTTGGTCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
Found at i:10030508 original size:557 final size:555
Alignment explanation
Indices: 10029268--10030509 Score: 1976
Period size: 557 Copynumber: 2.2 Consensus size: 555
10029258 TCCAAACTTG
10029268 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CAAACTTGTCA
* * * *
10029333 AAAACATATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACT-AACATCTGAACTTGTC-AA
65 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAA
* *
10029396 AACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
129 AACCTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
*
10029461 TTACGATTTCTTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
194 TGACGATTTCTTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
* *
10029526 TTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
259 TTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
**
10029591 AGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAA
324 AGTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATCGTATCTCCTTGGTTGTTGGATGAA
* **
10029656 CTTTCAAACTTGTCAAACTTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACG
389 CTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACG
10029721 ATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAAT
454 ATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAAT
10029786 AGTTTGTCATTTTGACCAAACAAGTTTCGATCCTTGAA
519 AGTTTGTCATTTTGACCAAACAAGTTTCGA-CCTTGAA
* *
10029824 TTAAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 TTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCAAACTTGTC
* * * * * * * *
10029888 AAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
64 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
* *
10029953 AACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTT
129 AACCTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10030018 TGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
194 TGACGATTTCTTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
* *
10030083 TTTTGAACATTTCATGCTCGGAAAATCCCATCATTTGGTCT-AATGAGTTTGTCATTTTGTAAAC
259 TTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAT-AGTTTGTCATTTTGTAAAC
* *
10030147 AAGTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATTGTGTCTCCTTGGTTGTTGGATGA
323 AAGTTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATCGTATCTCCTTGGTTGTTGGATGA
*
10030212 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
388 ACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
10030277 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTC-AAA
453 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAA
* *
10030341 TAGTTTGTCATTTTGACCAAACAAGTTTTGGA-CTGTTAA
518 TAGTTTGTCATTTTGACCAAACAAG-TTTCGACCT-TGAA
* * *
10030380 TTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACAAACTTCAAAACTTGT
1 TTAA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTC-AAACTTGT
*
10030444 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAA
63 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAA
10030509 A
128 A
10030510 CTTTTACGAT
Statistics
Matches: 625, Mismatches: 50, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
555 3 0.00
556 149 0.24
557 472 0.76
558 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (555 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAACTTGTCAA
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAA
CCTATTTACCTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTG
ACGATTTCTTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGCCTTTAAATTAAAAACTTATTTAAATGAGAATCGTATCTCCTTGGTTGTTGGATGAACT
TTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGAT
CCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAG
TTTGTCATTTTGACCAAACAAGTTTCGACCTTGAA
Found at i:10030757 original size:62 final size:62
Alignment explanation
Indices: 10030688--10030847 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10030678 AATTGGTTCT
* * * *
10030688 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTCTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
* * * * *
10030750 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
*
10030812 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10030848 CATTTATGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
Found at i:10031079 original size:215 final size:217
Alignment explanation
Indices: 10030783--10031280 Score: 603
Period size: 215 Copynumber: 2.3 Consensus size: 217
10030773 CGAACTTGTC
* * * *
10030783 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10030848 CATTTATGATTTCTTTTAAAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTAT-AG-
66 CATTTACGAGTTCTTTTAAAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10030911 AAATATTTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG-
130 AAAT-TTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10030975 TAAACAGGTTTAGGCCT-TTAAATT
194 CAAACAAGTTTAGGACTGTT-AATT
* * * *
10030999 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* *** *
10031063 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTAAAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
* * *
10031127 AAATTTCCAAACATTTCATGCTTGATAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10031192 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * *
10031216 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10031281 AACTTATCTA
Statistics
Matches: 237, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 4 0.02
215 125 0.53
216 32 0.14
217 44 0.19
218 32 0.14
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTAAAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10031319 original size:62 final size:61
Alignment explanation
Indices: 10031219--10031466 Score: 336
Period size: 62 Copynumber: 4.0 Consensus size: 61
10031209 GTTAATTAAT
*
10031219 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGC-TCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10031281 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10031343 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10031405 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
10031467 CTTTTTCGAT
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
61 4 0.02
62 163 0.96
63 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10031533 original size:619 final size:619
Alignment explanation
Indices: 10030659--10032642 Score: 3251
Period size: 619 Copynumber: 3.2 Consensus size: 619
10030649 TCCTCAAATG
* * *
10030659 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * * * * * * * *
10030723 AGACTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAA
*
10030788 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTT
130 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-TTT
* * * *
10030853 AT-GATTTCTTTTAAAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTATAGAAATAT
194 TTCGATTTCTTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATAT
* * *
10030917 TTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAG
259 TTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * *
10030982 GTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTTGGACGAAC
324 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAAC
*
10031047 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGA
389 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
* *
10031112 TCCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGATAAATCACATCATTTGGTCAAAATA
454 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
10031177 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTT
519 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTT
10031242 TCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
584 TCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
* * *
10031278 AAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10031343 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAACC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
*
10031408 TTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
131 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
* *
10031473 CGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATATTT
196 CGATTTCTTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
* *
10031538 CAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGT
261 CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
10031603 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
326 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
10031668 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
391 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
10031733 CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
456 CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
10031798 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
521 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
* * *
10031863 TCTCTTAGCTCTTGGACGAACTTCCAAACTTGTT
586 TCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
10031897 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10031962 AACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAAAAC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
*
10032027 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
* * *
10032092 CGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTT
196 CGATTTCTTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
* *
10032157 CGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
261 CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10032222 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAACTT
326 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
* **
10032287 TCGAACTTGTCAAACTTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
391 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
10032352 CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
456 CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
* * * * * *
10032417 TTGTCATTTTGACCAAACAAG-TTTCGATCCT-TGAATTAAAAACTTATTTACGTG-GCAATCGG
521 TTGTCATTTTGACCAAACAAGTTTTGGA--CTGTTAATTAATAACTTAGTTACGTGAG-AATTGT
*
10032479 TTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
583 TTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
* * * * *
10032516 AAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10032581 AACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAA
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAAA
10032643 CTTTGACGAT
Statistics
Matches: 1277, Mismatches: 82, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
618 11 0.01
619 1263 0.99
620 3 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (619 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
CGATTTCTTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
TCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
Found at i:10031804 original size:215 final size:217
Alignment explanation
Indices: 10031402--10031892 Score: 607
Period size: 215 Copynumber: 2.3 Consensus size: 217
10031392 TGAACTTGTC
* * *
10031402 AAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
** * * * * ** *
10031467 CTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAA
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * *
10031532 ATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10031596 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * *
10031618 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * ** *
10031682 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10031746 AAAT-TTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10031809 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* * * * *
10031835 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACT
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
10031893 TGTTAAAAAC
Statistics
Matches: 233, Mismatches: 35, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
214 3 0.01
215 129 0.55
216 31 0.13
217 46 0.20
218 24 0.10
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10031938 original size:62 final size:62
Alignment explanation
Indices: 10031838--10032085 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10031828 GTTAATTAAT
* * * * *
10031838 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10031900 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * **
10031962 AACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10032024 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10032086 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 172 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10032403 original size:215 final size:216
Alignment explanation
Indices: 10032021--10032518 Score: 589
Period size: 215 Copynumber: 2.3 Consensus size: 216
10032011 TGAACTTGTC
* * *
10032021 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATCG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * **
10032086 CTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
65 CTTTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10032151 ATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TA
130 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10032215 AACAAGTTTTG-GCCTTTAAATT
195 AACAAGTTTCGAGCC-TTAAATT
* *
10032237 AAAAACTTATTTACGTGAGAATCGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATCGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * ** *
10032301 CTTTCT-TGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAG
65 CTTT-TACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG
*
10032364 CAAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
128 -AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
* *
10032427 GACCAAACAAGTTTCGATCCTTGAATT
191 GA-CAAACAAGTTTCGAGCCTTAAATT
*
10032454 AAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATC-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10032518 A
64 A
10032519 GACTTATTTA
Statistics
Matches: 240, Mismatches: 31, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
214 3 0.01
215 128 0.53
216 32 0.13
217 42 0.17
218 35 0.15
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATCGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTCGAGCCTTAAATT
Found at i:10032555 original size:62 final size:62
Alignment explanation
Indices: 10032483--10032642 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10032473 AATCGGTTCT
* * * *
10032483 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTATTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* *
10032545 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* * * *
10032607 CTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10032643 CTTTGACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
Found at i:10032961 original size:216 final size:217
Alignment explanation
Indices: 10032578--10033057 Score: 569
Period size: 216 Copynumber: 2.2 Consensus size: 217
10032568 CAAACTTGTC
* * * *
10032578 AAAAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * * * * **
10032643 CTTTGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
*** * * * *
10032708 ATTTTTTGAACATTTCATGCTCGGAAAATCCCATCATTTTGGTCTAAAGAGTTTGTCATTTTG-T
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCA-TTTGGTCAAAAGAGTTTGTCATTTTGAC
*
10032772 AAACAAGTTTTGGCCT-TTAAATT
195 AAACAAGTTTTGGACTGTT-AATT
* * * *
10032795 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
** *
10032859 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
* *
10032923 AAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAAGAGTTTGTCATTTTG
10032986 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* *
10033012 AATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGAC
1 AA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
10033058 AAACTTCAAA
Statistics
Matches: 222, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
215 27 0.12
216 105 0.47
217 51 0.23
218 29 0.13
219 10 0.05
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAAGAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10032993 original size:558 final size:557
Alignment explanation
Indices: 10031895--10033126 Score: 2035
Period size: 557 Copynumber: 2.2 Consensus size: 557
10031885 TCCAAACTTG
*
10031895 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCA
* * * *
10031960 AAAACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAAA
* *
10032025 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
131 ACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
*
10032090 TACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
196 GACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
* * *
10032155 TTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
261 TTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAA
*
10032220 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAAC
326 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACGAAC
* **
10032285 TTTCGAACTTGTCAAACTTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
391 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
10032350 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
456 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
10032415 GTTTGTCATTTTGACCAAACAAG-TTTCGATCCT-TGAA
521 GTTTGTCATTTTGACCAAACAAGTTTTCGA--CTGTGAA
* *
10032452 TTAAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 TTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
10032516 AAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAAC-TTTCAAACTTGTCAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCT-AAACTTGTCAA
*
10032580 AAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
129 AAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* *
10032645 TTGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
194 TTGACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
* *
10032710 TTTTTGAACATTTCATGCTCGGAAAATCCCATCATTTTGGTCTAAAGAGTTTGTCATTTTGTAAA
259 TTTTCGAACATTCCATGCTCGGAAAATCCCATCA-TTTGGTCTAAAGAGTTTGTCATTTTGTAAA
* *
10032775 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACG
323 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACG
10032840 AACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGA
388 AACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGA
10032905 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAA
453 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAA
* *
10032970 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAA
518 ATAGTTTGTCATTTTGACCAAACAAGTTTTCGACTGTGAA
* * *
10033010 TTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACAAAC-TTCAAAACTTG
1 TTAA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTC-AAACTTG
*
10033073 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATC
63 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
10033127 CGAAGTTGTC
Statistics
Matches: 623, Mismatches: 42, Indels: 17
0.91 0.06 0.02
Matches are distributed among these distances:
556 3 0.00
557 267 0.43
558 256 0.41
559 95 0.15
560 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (557 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAAA
ACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
GACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
TTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAA
GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACGAAC
TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
GTTTGTCATTTTGACCAAACAAGTTTTCGACTGTGAA
Found at i:10033363 original size:276 final size:280
Alignment explanation
Indices: 10032795--10033415 Score: 697
Period size: 276 Copynumber: 2.2 Consensus size: 280
10032785 CCTTTAAATT
* * * *
10032795 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
10032859 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCA
* *
10032924 AATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA-C
* ** * * *
10032989 AAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTT
195 AAACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTT
*
10033054 GGACAAACTTCAAAACTTGTC
260 GCACAAACTTCAAAACTTGTC
* * * *
10033075 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
10033140 CTTTTACGA-TT-TTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCATT-CTTTCGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTT-GAGC
* * * * * * * * * *
10033202 AATTTTTCGAACA-TCACATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTG-
130 AAATTTCCAAACATTC-CATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10033265 TAAACAAGTTTCGGTCCT-CAAATGAA-AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGT-
194 CAAACAAGTTTCGG-ACTGCAAATGAATAAACTTAGTTACGTGAG-AATTGGTTCTCTCTT-GTC
* *
10033326 TCTTGCACGAACTTTC-GAACTTGTC
256 TCTTGCACAAAC-TTCAAAACTTGTC
* * * * * *
10033351 AAAGACTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10033416 AACTTATTTA
Statistics
Matches: 286, Mismatches: 48, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
275 1 0.00
276 100 0.35
277 22 0.08
278 8 0.03
279 88 0.31
280 31 0.11
281 36 0.13
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (280 bp):
AAAAACTTATTTACGTGAGAATTGTCTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTTG
CACAAACTTCAAAACTTGTC
Found at i:10033387 original size:62 final size:62
Alignment explanation
Indices: 10033318--10033477 Score: 221
Period size: 62 Copynumber: 2.6 Consensus size: 62
10033308 AATTGGTTCT
* * * * *
10033318 CTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTCTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
* * * * *
10033380 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
*
10033442 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10033478 CATTTATGAT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTCTCA
Found at i:10033709 original size:215 final size:217
Alignment explanation
Indices: 10033413--10033910 Score: 612
Period size: 215 Copynumber: 2.3 Consensus size: 217
10033403 CGAACTTGTC
* * * *
10033413 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10033478 CATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10033541 AAATATTTCGAACATTCCATGCTCGAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG-
130 AAAT-TTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10033605 TAAACAGGTTTAGGCCT-TTAAATT
194 CAAACAAGTTTAGGACTGTT-AATT
* * * *
10033629 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
*** *
10033693 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
* * *
10033757 AAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10033822 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * *
10033846 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10033911 AACTTATCTA
Statistics
Matches: 238, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 4 0.02
215 126 0.53
216 32 0.13
217 44 0.18
218 32 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10034082 original size:62 final size:61
Alignment explanation
Indices: 10033849--10034096 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 61
10033839 GTTAATTAAT
* * *
10033849 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10033911 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * **
10033973 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10034035 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10034097 CTTTTTCGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
61 2 0.01
62 163 0.98
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10034284 original size:834 final size:823
Alignment explanation
Indices: 10032559--10036533 Score: 2820
Period size: 838 Copynumber: 4.7 Consensus size: 823
10032549 TGGTTCTTGG
* * * * *
10032559 ACGAACTTTCAAACTTGTCAAAAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG
1 ACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10032624 AACATCCGAACTTGTCAAACTTTGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGT
66 AACATCCGAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGT
* * * *
10032689 TAATCCATTCCTTCTAGAAATTTTTTGAACATTTCATGCTCGGAAAATCCCATCATTTTGGTCTA
131 TAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTTGGTCTA
*
10032754 AAGAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTG
196 AAGAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTG
* *
10032819 TGTCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTA
261 TATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTA
10032884 GGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAG
326 GGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAG
10032949 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA
391 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA
*
10033014 TTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGACAAACTTCAAAACTTGTCAAAA
456 TTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAACTTCAAAACTTGTCAAAA
* * * *
10033079 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAACTTT
521 ACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAACTTT
* * * *
10033144 TACGATTTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCATTCTTTCGAGCAATTTTT
586 TACGATTGTTTATAACTTCGGTTCCTGAAAGCATCCAACATGCTCCATTCTTACGAGCAATTTTT
* * * * * * ** *
10033209 CGAACATCACATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
651 C-AACATCACATGCTCGGGAAATCGCAGAATCTTGACTAAATA-TTTGTCATTTCCTAAACAAGC
* * * * ** * ** * *
10033274 TTCGGTCCTCAAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGCACGAACT
714 TTCGGTACTC--A--AAAAACGTATTCAAGT-GCAATTCATTCTCTCTAGAATATTGCAC-AACA
* * ** * * * **
10033339 TTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGG
773 TTCCAACTCGGAAAACACTCATTTACA-GAATACTGTCTCACTTTTGG---TTAA
*
10033394 ACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10033459 AACATCCGAACTTGTCAAACATTT-ATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAG
66 AACATCCGAACTTGTCAAAC-TTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAG
*
10033523 TTAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCTCATCA-TTTGGTCT
130 TTAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTTGGTCT
* *
10033587 AAATAGTTTGTCATTTTGTAAACAGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT
195 AAAGAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT
*
10033652 GTATCTCCTTTGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTT
260 GTATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTT
* *
10033717 AGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGA
325 AGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGA
10033782 GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTA
390 GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTA
*
10033847 A-TAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTC-AAACTTGTCAA
455 ATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAAC-TTCAAAACTTGTCAA
*
10033910 AAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAAAA
519 AAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTC--AAA
* ** * * *
10033975 CTTATTCACTTGAGAATTGTTTCTCTCTT-GGTTCTTGGACTAA-CATCTGAACTTG-TCAAAAC
582 CTT-TT-AC----G-ATTGTTTATAACTTCGGTTCCT-GA--AAGCATC-CAACATGCTC----C
* * *** * *
10034037 CTTACTTACGTGAG-AATTGTTTC-TC-TCTTGGTTCTTGGACGAACATC-C-GAA-CTTGAC-A
632 ATT-CTTAC--GAGCAATT-TTTCAACATC-ACATGCTCGG--GAA-ATCGCAGAATCTTGACTA
** * *
10034095 AACT-TTT-TCGATTTCCTTTATAA-CTTCGGTAC-C-AAAAA-GTATTCAAGT-TAATTCATTC
689 AA-TATTTGTC-ATTTCCTAAACAAGCTTCGGTACTCAAAAAACGTATTCAAGTGCAATTCATTC
* * * * * *
10034153 -CTTCTAGAAATATTTCA-AACATTCCATGCTCGGAAAATCCCATCATTTGGTCCA-AATAGTTT
752 TC-TCTAG-AATATTGCACAACATTCCA-ACTCGGAAAA-CAC-TCA-TT--TACAGAATACTGT
*
10034215 GTCA-TTTT-G-TAA
809 CTCACTTTTGGTTAA
* ** ** * * * *
10034227 AC-AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGG
1 ACGAACTTCCGAAC-TT--ATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * * ** * *
10034290 ACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACA
63 ACGAACATCCGAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCA
*** * * * * * *
10034355 AGACGATCCATTCCTT-TGAGCAA-ACTTCCAA-A---CTTG-TC-AAAAA---C-T-TTTTTAC
128 AGTTAATCCATTCCTTCT-AGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTT-G
* ** * * * ** * ** *
10034407 GT-GAGAATTGTTTCTC--TCT-T-AGC-TCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
191 GTCTA-AAGAGTTTGTCATTTTGTAAACAAGTT-TA-GGCCTT-TAAA--T-T-AAAAACTTATT
* * * * * * * * * *
10034466 CACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAAC-ATCTGAACTTGTCAAAAACTTATTTA
248 TACGTGAGAATTGTATCTC-CTTGGCTGTTGGACGAACTTTC-GAACTAGTC--AAAC-T-TTCA
* * *
10034530 CGTGAGAATTGTTTCTCT--CTT-GGTT-CTTGGACGAA-CATCCAA-ACTTGTCAAACTTTTAC
307 C--GAG--TTCTTT-TATAACTTAGGTTCCTT--A--AAGCATACAAGAC--G----A----T-C
* * ** * * * **
10034589 GATTTCTTTTATAACTTTGATACCAAAAAGTATT-CAAGTTAATCCATTCCTTCTAGAAATTTTT
352 CA-TTC--------CTTTG--AGC--AAA-T-TTCCAA-ACATTCCA-TGCTT-GAGAAA--TCA
* **
10034653 CGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGT
397 C-ATCATT---TGGTC--AAAAT---A--GTTT-GT-C--AT--TTTG--A----CCAAACAAGT
* * * * * * *
10034718 TTTGGCCT-TTAAATTAA-AAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAA
439 TTTGGACTGTT-AATTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAA
* * * * * * *
10034780 CATTC-GAACTAGTC--AAACTT-TC-AC--GAG--TTCTTT-TATAACCTAGGTTCCTT--A-C
503 C-TTCAAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCT---CTTGCTT-CTTGGATG
* * ** * * ** ** * *
10034832 AGCATACAAGAC--GATCCATTCCTTTGAGCAAATT-TCCA-AACATTCCATGCTTGAGAA--AT
563 AACATCCAA-ACTTG-T-CA-AACTTTTA-C-GATTGTTTATAAC-TTCGGTTCCTGA-AAGCAT
* * * ** * * * * * * * ** * *
10034891 CACATCATTTGGTCAAAATAGTT-TG-TC-A-TTTTGACCA-AACAAGTTTTGG-ACT-GTTAAT
620 C-CAACA--TGCTC--CATTCTTACGAGCAATTTTTCAACATCACATGCTCGGGAAATCG--CA-
* * * ** **
10034949 TAATAACTTAGTTACGTGAGAATTGTTTCTC-TCTTAGCTCTTGGACGAA-CTTTC-AAACTTGT
677 GAAT--CTT-G--AC-T-A-AA-TATTTGTCAT-TT--C-C-TAAAC-AAGC-TTCGGTAC---T
* * * ** * ** * * * *
10035011 C-AAAAACTTA-TCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAAC-TTCCAAACTTGT
723 CAAAAAACGTATTC-AAGTG-CAATTCATTCTCTCTAGAATATTGCA-CAACATTCC-AACTCG-
* * * * * * **
10035073 CAAAA-ACTTATTCACTTGAGAAT--TGTTTCTCTCTTGGTTCTTGG
783 GAAAACACTCATTTAC---AGAATACTGTCTCACTTTTGG---TTAA
* * * * * * *
10035117 ACTAACATCTGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
** * * *
10035182 AACATCCGAACTTGTCAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGT
66 AACATCCGAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGT
* * * * *
10035247 TAATTCATTCCTTCTAGAAATATTTCAAACATTTCATGCTCGGAAAATCCCATCA-TTTGGTCCA
131 TAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTTGGTCTA
* *
10035311 AATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTG
196 AAGAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTG
* *
10035376 TGTCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTA
261 TATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTA
10035441 GGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAG
326 GGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAG
10035506 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA
391 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA
*
10035571 TTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGACAAACTTCAAAACTTGTCAAAA
456 TTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAACTTCAAAACTTGTCAAAA
* * * * *
10035636 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAACTTT
521 ACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAACTTT
* * * *
10035701 TACGATTTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCATTCTTTCGAGCAATTTTT
586 TACGATTGTTTATAACTTCGGTTCCTGAAAGCATCCAACATGCTCCATTCTTACGAGCAATTTTT
* * * * * * * ** *
10035766 CGAACATCACATGCACGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
651 C-AACATCACATGCTCGGGAAATCGCAGAATCTTGACTAAATA-TTTGTCATTTCCTAAACAAGC
* * * * ** * ** * * *
10035831 TTCGGTCCTCAAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACT
714 TTCGGTACTC--A--AAAAACGTATTCAAGT-GCAATTCATTCTCTCTAGAATATTGCAC-AACA
* * * * * * **
10035896 TTCGAACTTGTCAAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGG
773 TTCCAACTCG-GAAA-AC--ACTCATTTACA-GAATACTGTCTCACTTTTGG---TTAA
*
10035955 ACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10036020 AACATCCGAACTTGTCAAACATTT-ATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAG
66 AACATCCGAACTTGTCAAAC-TTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAG
* *
10036084 TTAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGGAAAATCTCATCA-TTTGGTCT
130 TTAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTTGGTCT
* *
10036148 AAATAGTTTGTCATTTTGTAAACAGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT
195 AAAGAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT
*
10036213 GTATCTCCTTTGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTT
260 GTATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTT
*
10036278 AGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGA
325 AGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGA
10036343 GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTA
390 GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTA
*
10036408 A-TAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTC-AAACTTGTCAA
455 ATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAAC-TTCAAAACTTGTCAA
*
10036471 AAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
519 AAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAA
10036534 AACTTATTCA
Statistics
Matches: 2465, Mismatches: 408, Indels: 532
0.72 0.12 0.16
Matches are distributed among these distances:
819 2 0.00
820 3 0.00
821 5 0.00
822 5 0.00
823 5 0.00
824 13 0.01
825 1 0.00
826 29 0.01
827 26 0.01
828 2 0.00
829 9 0.00
830 1 0.00
831 9 0.00
832 14 0.01
833 133 0.05
834 397 0.16
835 232 0.09
836 60 0.02
837 154 0.06
838 493 0.20
839 23 0.01
840 9 0.00
841 17 0.01
842 25 0.01
843 26 0.01
844 37 0.02
845 22 0.01
846 28 0.01
847 14 0.01
848 18 0.01
849 6 0.00
850 11 0.00
851 2 0.00
853 5 0.00
854 5 0.00
855 5 0.00
856 2 0.00
858 9 0.00
859 6 0.00
860 7 0.00
861 10 0.00
862 10 0.00
863 7 0.00
864 14 0.01
865 11 0.00
866 1 0.00
867 6 0.00
868 6 0.00
869 5 0.00
870 14 0.01
871 6 0.00
872 7 0.00
873 11 0.00
874 5 0.00
875 8 0.00
876 5 0.00
877 11 0.00
878 18 0.01
879 9 0.00
880 13 0.01
881 10 0.00
882 3 0.00
883 4 0.00
884 20 0.01
885 11 0.00
886 37 0.02
887 69 0.03
888 48 0.02
889 84 0.03
890 19 0.01
891 10 0.00
892 4 0.00
893 1 0.00
894 7 0.00
895 2 0.00
896 27 0.01
897 29 0.01
898 1 0.00
899 13 0.01
900 5 0.00
901 5 0.00
902 5 0.00
903 2 0.00
904 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (823 bp):
ACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACATCCGAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGT
TAATCCATTCCTTCTAGAAATATTTCGAACATTCCATGCTCGAAAAATCCCATCATTTTGGTCTA
AAGAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTG
TATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTA
GGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAG
AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA
TTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACAAACTTCAAAACTTGTCAAAA
ACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAACTTT
TACGATTGTTTATAACTTCGGTTCCTGAAAGCATCCAACATGCTCCATTCTTACGAGCAATTTTT
CAACATCACATGCTCGGGAAATCGCAGAATCTTGACTAAATATTTGTCATTTCCTAAACAAGCTT
CGGTACTCAAAAAACGTATTCAAGTGCAATTCATTCTCTCTAGAATATTGCACAACATTCCAACT
CGGAAAACACTCATTTACAGAATACTGTCTCACTTTTGGTTAA
Found at i:10034446 original size:62 final size:62
Alignment explanation
Indices: 10034381--10034581 Score: 305
Period size: 62 Copynumber: 3.2 Consensus size: 62
10034371 TGAGCAAACT
* * *
10034381 TCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACT
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
* * *
10034443 TCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTC-TAGGTTCTTGGACTAACA
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA-GTTCTTGGACGAACA
** *
10034505 TCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
10034567 TCCAAACTTGTCAAA
1 TCCAAACTTGTCAAA
10034582 CTTTTACGAT
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 2 0.02
62 120 0.98
63 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (62 bp):
TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
Found at i:10034807 original size:485 final size:485
Alignment explanation
Indices: 10033892--10034872 Score: 1730
Period size: 485 Copynumber: 2.0 Consensus size: 485
10033882 CTCTTGGACG
* *
10033892 AACTTTCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAAC
1 AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
* *
10033957 TTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
66 TTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATC
* *
10034022 TGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
131 TGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAA
* * *
10034087 ACTTGACAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATT
196 ACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATT
10034152 CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
261 CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
10034217 CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
326 CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
* *
10034282 GTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
391 GTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAA
10034347 AGCATACAAGACGATCCATTCCTTTGAGCA
456 AGCATACAAGACGATCCATTCCTTTGAGCA
* *
10034377 AACTTCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACGAA
1 AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAA
10034441 CTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
65 CTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
*
10034506 CTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
130 CTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
* * *
10034571 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCAT
195 AACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCAT
* * * *
10034636 TCCTTCTAGAAATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
260 TCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
10034701 TCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
325 TCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
*
10034766 GGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTTA
390 GGTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTTA
*
10034831 CAGCATACAAGACGATCCATTCCTTTGAGCA
455 AAGCATACAAGACGATCCATTCCTTTGAGCA
*
10034862 AATTTCCAAAC
1 AACTTCCAAAC
10034873 ATTCCATGCT
Statistics
Matches: 471, Mismatches: 24, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
485 469 1.00
486 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (485 bp):
AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATC
TGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAA
ACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATT
CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
GTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAA
AGCATACAAGACGATCCATTCCTTTGAGCA
Found at i:10034899 original size:215 final size:217
Alignment explanation
Indices: 10034517--10035014 Score: 612
Period size: 215 Copynumber: 2.3 Consensus size: 217
10034507 TGAACTTGTC
*
10034517 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
* * * * * * **
10034582 CTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACCTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10034647 ATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10034711 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * *
10034733 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACATTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
* * ** * *
10034797 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTTACAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACCTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10034861 AAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10034924 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* * * * *
10034950 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
10035015 AACTTATCTA
Statistics
Matches: 238, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 127 0.53
216 32 0.13
217 46 0.19
218 30 0.13
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACCTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10035053 original size:62 final size:61
Alignment explanation
Indices: 10034953--10035200 Score: 336
Period size: 62 Copynumber: 4.0 Consensus size: 61
10034943 GTTAATTAAT
*
10034953 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10035015 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10035077 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10035139 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
10035201 CTTTTTCGAT
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
61 4 0.02
62 163 0.96
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10035538 original size:215 final size:217
Alignment explanation
Indices: 10035136--10035614 Score: 576
Period size: 215 Copynumber: 2.2 Consensus size: 217
10035126 TGAACTTGTC
* *
10035136 AAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
** * * * * ** *
10035201 CTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAA
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * *
10035266 ATATTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10035330 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * * *
10035352 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * ** *
10035416 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10035480 AAAT-TTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10035543 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* *
10035569 AATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGAC
1 AA-AAACTTACTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
10035615 AAACTTCAAA
Statistics
Matches: 222, Mismatches: 32, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
214 3 0.01
215 128 0.58
216 31 0.14
217 21 0.09
218 29 0.13
219 10 0.05
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (217 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10035562 original size:619 final size:620
Alignment explanation
Indices: 10034375--10035696 Score: 2328
Period size: 619 Copynumber: 2.1 Consensus size: 620
10034365 TTCCTTTGAG
* * *
10034375 CAAACTTCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACG
1 CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGATG
10034439 AACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAAC
65 AACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAAC
*
10034504 ATCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
130 ATCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
* *
10034569 CAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCC
195 CAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCC
* * * *
10034634 ATTCCTTCTAGAAATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTT
260 ATTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTT
10034699 TGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
325 TGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
10034764 TTGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCT
390 TTGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCT
*
10034829 TACAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCAC
455 TAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCAC
10034894 ATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA-TAACTT
520 ATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTT
10034958 AGTTACGTGAGAATTGTTTCTCTCTTAG-CTCTTGGA
585 AGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGA
* *
10034994 CGAACTTTCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
1 CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
* *
10035059 ACTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACA
66 ACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACA
*
10035124 TCTGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
131 TCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
* * * *
10035189 GAACTTGTCAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCA
196 AAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCA
*
10035254 TTCCTTCTAGAAATATTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
261 TTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
*
10035319 GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCT
326 GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCT
* *
10035384 TGGTTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
391 TGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTT
10035449 AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
456 AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
10035514 TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
521 TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
10035579 GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
586 GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
* *
10035614 CAAAC-TTCAAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
1 CAAACTTTC-AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATG
* * *
10035678 AACATCCGAAGTTGTCAAA
65 AACTTCCAAACTTGTCAAA
10035697 CTTTTACGAT
Statistics
Matches: 668, Mismatches: 31, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
618 2 0.00
619 554 0.83
620 112 0.17
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (620 bp):
CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
ACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACA
TCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
AAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCA
TTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCT
TGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACCTAGGTTCCTT
AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
Found at i:10035918 original size:276 final size:279
Alignment explanation
Indices: 10035352--10035976 Score: 640
Period size: 279 Copynumber: 2.2 Consensus size: 279
10035342 CCTTTAAATT
* * * *
10035352 AAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTCAAAC
1 AAAAACTTATTTATGTGAGAATTGTGTCTCCTTGGTTCTTGGACGAACATCCGAACTAGTCAAAC
*
10035417 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCAA
** *
10035482 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
131 ATTTCCAAACATTCCATGCACGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA-CA
* ** * * *
10035547 AACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTG
195 AACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTTG
10035612 GACAAACTTCAAAACTTGTC
260 GACAAACTTCAAAACTTGTC
* * * *
10035632 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTGTCTC-CTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * * * * *
10035697 CTTTTACGA-TT-TTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCATT-CTTTCGAGC
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTT-GAGC
* * * * * * * * * *
10035759 AATTTTTCGAACA-TCACATGCACGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTG-
129 AAATTTCCAAACATTC-CATGCACGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10035822 TAAACAAGTTTCGGTCCT-CAAATGAA-AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGT-
193 CAAACAAGTTTCGG-ACTGCAAATGAATAAACTTAGTTACGTGAG-AATTGGTTCTCTCTT-GTC
* *
10035883 TCTTGGACGAACTTTC-GAACTTGTC
255 TCTTGGACAAAC-TTCAAAACTTGTC
* * * * ** * *
10035908 AAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGT
1 AAAAACTTATTTATGT-GA-GAATTGTGTCTC-C--TTGGTTCTTGGACGAACATCCGAACTAGT
10035973 CAAA
61 CAAA
10035977 AACTTATTTA
Statistics
Matches: 284, Mismatches: 50, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
275 1 0.00
276 60 0.21
277 23 0.08
278 17 0.06
279 87 0.31
280 60 0.21
281 36 0.13
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (279 bp):
AAAAACTTATTTATGTGAGAATTGTGTCTCCTTGGTTCTTGGACGAACATCCGAACTAGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCACGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTTGG
ACAAACTTCAAAACTTGTC
Found at i:10035948 original size:66 final size:62
Alignment explanation
Indices: 10035875--10036038 Score: 211
Period size: 66 Copynumber: 2.6 Consensus size: 62
10035865 AATTGGTTCT
* * **
10035875 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTATTTACATGAGTACTGTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTA-A-GA--ACTGTCTC
10035940 A
62 A
* * * *
10035941 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
*
10036003 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10036039 CATTTATGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
62 40 0.45
64 2 0.02
65 1 0.01
66 45 0.51
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
Found at i:10036017 original size:62 final size:62
Alignment explanation
Indices: 10035846--10036038 Score: 235
Period size: 62 Copynumber: 3.0 Consensus size: 62
10035836 TCCTCAAATG
* * *
10035846 AAAAACTTATTTACGT-GGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* ** * * * *
10035908 AAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGT
1 AAAAACTTATTTACGTA-A-GA--ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
10035973 C
62 C
*
10035974 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10036036 AAA
1 AAA
10036039 CATTTATGAT
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
62 53 0.49
64 3 0.03
65 2 0.02
66 50 0.46
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10036270 original size:215 final size:217
Alignment explanation
Indices: 10035974--10036471 Score: 614
Period size: 215 Copynumber: 2.3 Consensus size: 217
10035964 CGAACTTGTC
* * * *
10035974 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10036039 CATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10036102 AAATATTTCGAACATTCCATGCTCGGA-AAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG
130 AAAT-TTCCAAACATTCCATGCT-GGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
10036166 -TAAACAGGTTTAGGCCT-TTAAATT
193 ACAAACAAGTTTAGGACTGTT-AATT
* * * *
10036190 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
*** *
10036254 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
*
10036318 AAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10036383 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * *
10036407 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10036472 AACTTATCTA
Statistics
Matches: 239, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 6 0.03
215 125 0.52
216 32 0.13
217 44 0.18
218 32 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10036643 original size:62 final size:61
Alignment explanation
Indices: 10036410--10036657 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 61
10036400 GTTAATTAAT
* * *
10036410 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10036472 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * **
10036534 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10036596 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10036658 CTTTTTCGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
61 2 0.01
62 163 0.98
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10036707 original size:619 final size:622
Alignment explanation
Indices: 10035846--10037153 Score: 2169
Period size: 619 Copynumber: 2.1 Consensus size: 622
10035836 TCCTCAAATG
* * *
10035846 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAA
* * * * *
10035910 AGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
65 AGA--TACTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
* *
10035975 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
128 AAAACTTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAAC
* *
10036040 ATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
193 ATTTATGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
* * *
10036105 TATTTCGAACATTCCATGCTCGGAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
258 TATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA
* *
10036170 CAGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTTGGACG
323 CAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACG
*
10036235 AACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGA
388 AACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGA
10036300 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAA
453 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAA
10036365 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA-TAACTTAGTTACGTGAGAAT
518 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAAT
*
10036429 TGTTTCTCTCTTGGCTCTTGGACGAACTTTC-AAACTTGTC
583 TGTTTCTCTCTTGGCTCTTGGACAAAC-TTCAAAACTTGTC
* * *
10036469 AAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * * * * *
10036534 -A-ACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAA
66 GATACTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
* *
10036597 CCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAAC-TT
131 ACTTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAACATT
* *
10036661 TTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATA
196 TAT-GATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATA
*
10036726 TTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
260 TTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACA
* * *
10036791 AGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAA
325 AGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACGAA
10036856 CTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACG
390 CTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACG
10036921 ATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAAT
455 ATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAAT
10036986 AGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTG
520 AGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTG
*
10037051 TTTCTCTCTTGTCTCTTGGACAAACTTCAAAACTTGTC
585 TTTCTCTCTTGGCTCTTGGACAAACTTCAAAACTTGTC
* * *
10037089 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
10037154 CTTTTACGAT
Statistics
Matches: 638, Mismatches: 43, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
618 4 0.01
619 462 0.72
620 113 0.18
622 1 0.00
623 57 0.09
624 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (622 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
GATACTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
ACTTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAACATT
TATGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATAT
TTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
GTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACGAAC
TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGT
TTCTCTCTTGGCTCTTGGACAAACTTCAAAACTTGTC
Found at i:10036995 original size:215 final size:217
Alignment explanation
Indices: 10036593--10037071 Score: 567
Period size: 215 Copynumber: 2.2 Consensus size: 217
10036583 TGAACTTGTC
* *
10036593 AAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGACAAA
** * * * * ** *
10036658 CTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAA
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * *
10036723 ATATTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10036787 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * * * *
10036809 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGACAAA
* * ** *
10036873 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10036937 AAAT-TTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10037000 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* *
10037026 AATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGAC
1 AA-AAACTTACTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
10037072 AAACTTCAAA
Statistics
Matches: 221, Mismatches: 33, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
214 3 0.01
215 127 0.57
216 31 0.14
217 21 0.10
218 29 0.13
219 10 0.05
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (217 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGACAAA
CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10037375 original size:276 final size:279
Alignment explanation
Indices: 10036809--10037433 Score: 649
Period size: 279 Copynumber: 2.2 Consensus size: 279
10036799 CCTTTAAATT
* * * *
10036809 AAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTCAAAC
1 AAAAACTTATTTATGTGAGAATTGTGTCTCCTTGGTTCTTGGACGAACATCCGAACTAGTCAAAC
*
10036874 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCAA
* *
10036939 ATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA-CA
* ** * * *
10037004 AACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTG
195 AACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTTG
10037069 GACAAACTTCAAAACTTGTC
260 GACAAACTTCAAAACTTGTC
* * * *
10037089 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTGTCTC-CTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * * * * *
10037154 CTTTTACGA-TT-TTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCATT-CTTTCGAGC
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTT-GAGC
* * * * * * * * * *
10037216 AATTTTTCGAACA-TCACATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTG-
129 AAATTTCCAAACATTC-CATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10037279 TAAACAAGTTTCGGTCCT-CAAATGAA-AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGT-
193 CAAACAAGTTTCGG-ACTGCAAATGAATAAACTTAGTTACGTGAG-AATTGGTTCTCTCTT-GTC
* *
10037340 TCTTGGACGAACTTTC-GAACTTGTC
255 TCTTGGACAAAC-TTCAAAACTTGTC
* * * * ** * *
10037365 AAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGT
1 AAAAACTTATTTATGT-GA-GAATTGTGTCTC-C--TTGGTTCTTGGACGAACATCCGAACTAGT
10037430 CAAA
61 CAAA
10037434 AACTTATTTA
Statistics
Matches: 285, Mismatches: 49, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
275 1 0.00
276 60 0.21
277 23 0.08
278 17 0.06
279 88 0.31
280 60 0.21
281 36 0.13
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (279 bp):
AAAAACTTATTTATGTGAGAATTGTGTCTCCTTGGTTCTTGGACGAACATCCGAACTAGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATACAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTCGGACTGCAAATGAATAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGTCTCTTGG
ACAAACTTCAAAACTTGTC
Found at i:10037405 original size:66 final size:62
Alignment explanation
Indices: 10037332--10037495 Score: 211
Period size: 66 Copynumber: 2.6 Consensus size: 62
10037322 AATTGGTTCT
* * **
10037332 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTATTTACATGAGTACTGTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTA-A-GA--ACTGTCTC
10037397 A
62 A
* * * *
10037398 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
*
10037460 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10037496 CATTTATGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
62 40 0.45
64 2 0.02
65 1 0.01
66 45 0.51
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
Found at i:10037474 original size:62 final size:62
Alignment explanation
Indices: 10037303--10037495 Score: 235
Period size: 62 Copynumber: 3.0 Consensus size: 62
10037293 TCCTCAAATG
* * *
10037303 AAAAACTTATTTACGT-GGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* ** * * * *
10037365 AAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGT
1 AAAAACTTATTTACGTA-A-GA--ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
10037430 C
62 C
*
10037431 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10037493 AAA
1 AAA
10037496 CATTTATGAT
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
62 53 0.49
64 3 0.03
65 2 0.02
66 50 0.46
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10037617 original size:838 final size:835
Alignment explanation
Indices: 10036469--10040551 Score: 3616
Period size: 838 Copynumber: 4.8 Consensus size: 835
10036459 CAAACTTGTC
* * * *
10036469 AAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGCTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * * * * * *
10036534 A--ACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAA
65 ACTATTTATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
* * *
10036597 CCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAACTTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * *
10036662 TTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATAT
195 AT-GATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATAT
* *
10036727 TTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
259 TTCAAACATTCCATGCTCGGAAAATCTCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
*
10036792 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAAC
324 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAAC
10036857 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
389 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
10036922 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
454 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
10036987 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGT
519 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA-TAACTTAGTTACGTGAGAATTGT
* *
10037052 TTCTCTCTTGTCTCTTGGACAAAC-TTCAAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTT
583 TTCTCTCTTGTCTCTTGGACGAACTTTC-AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
*
10037116 CTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTT
647 CTCTCTTGGTTCTTGGATGAACATCCAAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTT
10037181 CCTGA-AAGTATC-CAAGATGCTC-CATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGG-G
712 CCTGACAA-TATCACAAGATGCTCACATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGAG
* *
10037242 TAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTCAAATG
776 TAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTACTC-AATG
* *
10037303 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGCTTCTTGGACGAACTTTCAAACTTGTCAAA
* *
10037368 GACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
65 -AC-TATTTATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
*
10037433 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACA
128 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-
10037498 TTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
192 TTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
* *
10037563 ATTTCGAACATTCCATGCTCGGAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
257 ATTTCAAACATTCCATGCTCGGAAAATCTCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* * * *
10037628 AGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTTGGACGA
322 AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGA
*
10037693 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGAC
387 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
*
10037758 GATCCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAA
452 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAA
10037823 TAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
517 TAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
* *
10037888 TTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTT
582 TTTCTCTCTTGTCTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
10037953 CTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTC
647 CTCTCTTGGTTCTTGGATGAACATCCAAAGTTGTC--AAACTT-TT-AC----G-ATTTTTTATA
* * * ** ** * *
10038018 TCTT-GGTTCTTGGACTAACATCTGAACTTG-TCAAAACCTTACTTACGTGAG-AATTGTTTC--
703 ACTTCGGTTCCT-GAC-AATATCACAAGATGCTC---ACATT-CTTTC--GAGCAATT-TTTCGA
* *** * * * * * * * ** ** *
10038078 TC-TCTTGGTTCTTGGACGAACATC-C-GAA-CTTGAC-AAACT--TTT-TCGATTTCCTTTATA
759 ACATC-ACATGCTCGGA-GTA-ATCGCATAATTTTGTCTAAA-TAGTTTGTC-TTTTTGTAAACA
*
10038135 A-CTTCGGTAC-C----
819 AGTTTCGGTACTCAATG
* * * * ** * ** * * * * ** * *
10038146 AAAAA-GTATTCAAGT-TAATTCATTC-CTTCTAGAAATATT--TCAAACATTCCATGCTCG-GA
1 AAAAACTTATTTACGTGGAATTGGTTCTC-TCTTG-CTTCTTGGACGAAC-TTTCAAACTTGTCA
* * * * ** * * **
10038205 AAATCCCATCATTTGGTCCAAAT-AGT--T-TGTCA-TTTT-G----TAAAC-AAGTTTTGGCCT
63 AAA---C-T-ATTT-ATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAAC-
* * * * * * *
10038259 TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCAAACT
121 TT--GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * * * ** * * ***
10038323 AGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCT
184 TGTCAAACTTT-ATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
* * * * * * * *
10038388 T-TGAGCAAA-CTTCCAAAC--T---TG-TC--AAAAACT--T-TTTTACGT-GAGAATTGTTTC
248 TCT-AG-AAATATTTCAAACATTCCATGCTCGGAAAATCTCATCATTT-GGTCCA-AATAGTTTG
* * * * * *
10038439 TC--TCT-T-AGC---TCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTG
309 TCATTTTGTAAACAAGTTTTGG-C---CTT-TAAA--T-T-AAAAACTTATTTACGTGAGAATTG
* * * * * * * *
10038497 TTTCTCTCTAGGTTCTTGGACTAAC-ATCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
365 TATCTC-CTTGGTTGTTGGACGAACTTTC-GAACTAGTC--AAAC-T-TTCAC--GAG--TTCTT
* * *
10038561 TCTCT--CTT-GGTT-CTTGGACGAA-CATCCAA-ACTTGTCAAACTTTTACGATTTCTTTTATA
420 T-TATAACTTAGGTTCCTT--A--AAGCATACAAGAC--G----A----T-CCA-TTC-------
* * * * *
10038620 ACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCC-TTCTAGAAATTTTTCGATCATTCCATG
461 -CTTTG--AGC--AAA-T-TTCCA---AA--CATTCCATGCTTG--A------GA--A-A-----
* * *
10038684 GTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG--TAAACAAGTTTTGGCCT-TT
498 -TC-----A---CATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTT
* * * * * * *
10038746 AAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGT-TGTTGGACGAACATTCGAACTA
554 -AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACGAACTTTCAAACTT
* * * * * *
10038809 GTC--AAAC-T-TTCAC--GAG--TTCTTT-TATAACTTAGGTTCCTT-CA--AGCATACAAGAC
617 GTCAAAAACTTATTTACGTGAGAATTGTTTCTCT--CTT-GGTT-CTTGGATGAACATCCAA-A-
* * ** * * * ** ** * * * ** *
10038862 GAT-CCATTCCTTTGAGCAAATTTCCA-AACATTCCATGCTTGAGAA-ATCACATCATTTGGTCA
676 GTTGTCA-AACTTTTA-CGATTTTTTATAAC-TTCGGTTCCTGACAATATCACA--AGATGCTC-
* ** * * * * * * ** * *
10038924 AAATAGTTT-G-TC-A-TTTT-GACCA-AACAAGTTTTGGACTGTTAAT-TAATAACTTAGTTAC
735 ACATTCTTTCGAGCAATTTTTCGAACATCACATG-CTCGGA--G-TAATCGCATAATTTTG-T-C
* * ** * ** ** *
10038982 GTGAGAATTGTTTCTCTCTTAGCTCT-TGGACGAACTTTC-AAACT-TGTC
794 -T-A-AATAGTTTGTCT-TT---T-TGTAAAC-AAGTTTCGGTACTCAATG
* * * *
10039030 AAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGCTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * * * * * *
10039095 A--ACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAA
65 ACTATTTATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
* *
10039158 CCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
130 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * *
10039223 TTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATAT
195 AT-GATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATAT
* *
10039288 TTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
259 TTCAAACATTCCATGCTCGGAAAATCTCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
*
10039353 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAAC
324 GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAAC
10039418 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
389 TTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGA
10039483 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
454 TCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATA
10039548 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGT
519 GTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA-TAACTTAGTTACGTGAGAATTGT
* *
10039613 TTCTCTCTTGTCTCTTGGACAAAC-TTCAAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTT
583 TTCTCTCTTGTCTCTTGGACGAACTTTC-AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
*
10039677 CTCTCTTGGTTCTTGGATGAACATCCGAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTT
647 CTCTCTTGGTTCTTGGATGAACATCCAAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTT
10039742 CCTGA-AAGTATC-CAAGATGCTC-CATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGG-G
712 CCTGACAA-TATCACAAGATGCTCACATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGAG
* *
10039803 TAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTCAAATG
776 TAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTACTC-AATG
* *
10039864 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGCTTCTTGGACGAACTTTCAAACTTGTCAAA
* *
10039929 GACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
65 -AC-TATTTATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAA
*
10039994 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACA
128 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-
10040059 TTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
192 TTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
* *
10040124 ATTTCGAACATTCCATGCTCGGAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
257 ATTTCAAACATTCCATGCTCGGAAAATCTCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAC
* * * *
10040189 AGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTTGGACGA
322 AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGA
*
10040254 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGAC
387 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
*
10040319 GATCCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAA
452 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAA
10040384 TAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
517 TAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
* *
10040449 TTTCTCTCTTGGCTCTTGGATGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
582 TTTCTCTCTTGTCTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
* * *
10040514 CTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
647 CTCTCTTGGTTCTTGGATGAACATCCAAAGTTGTCAAA
10040552 AACTTATTCA
Statistics
Matches: 2562, Mismatches: 421, Indels: 529
0.73 0.12 0.15
Matches are distributed among these distances:
817 4 0.00
818 1 0.00
820 2 0.00
821 4 0.00
822 5 0.00
823 4 0.00
824 13 0.01
825 1 0.00
826 35 0.01
827 21 0.01
828 2 0.00
829 6 0.00
830 1 0.00
831 11 0.00
832 16 0.01
833 18 0.01
834 232 0.09
835 47 0.02
836 36 0.01
837 258 0.10
838 949 0.37
839 32 0.01
840 30 0.01
841 22 0.01
842 22 0.01
843 32 0.01
844 29 0.01
845 19 0.01
846 26 0.01
847 7 0.00
848 7 0.00
849 10 0.00
850 10 0.00
851 10 0.00
852 15 0.01
853 6 0.00
854 15 0.01
855 2 0.00
856 2 0.00
857 1 0.00
858 9 0.00
859 5 0.00
860 6 0.00
863 6 0.00
864 8 0.00
865 15 0.01
866 5 0.00
867 6 0.00
868 2 0.00
869 5 0.00
870 7 0.00
871 6 0.00
872 13 0.01
873 8 0.00
874 3 0.00
875 3 0.00
876 5 0.00
877 8 0.00
878 16 0.01
879 9 0.00
880 16 0.01
881 13 0.01
882 3 0.00
883 3 0.00
884 12 0.00
885 9 0.00
886 31 0.01
887 71 0.03
888 50 0.02
889 118 0.05
890 13 0.01
891 10 0.00
892 4 0.00
893 1 0.00
894 6 0.00
895 2 0.00
896 23 0.01
897 34 0.01
898 1 0.00
899 13 0.01
900 4 0.00
901 5 0.00
902 4 0.00
903 2 0.00
905 1 0.00
906 5 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (835 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGCTTCTTGGACGAACTTTCAAACTTGTCAAAA
CTATTTATTCACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTA
TGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
CAAACATTCCATGCTCGGAAAATCTCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
TCTCTTGTCTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCT
CTTGGTTCTTGGATGAACATCCAAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTTCCTG
ACAATATCACAAGATGCTCACATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGAGTAATC
GCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTACTCAATG
Found at i:10037727 original size:215 final size:217
Alignment explanation
Indices: 10037431--10037928 Score: 605
Period size: 215 Copynumber: 2.3 Consensus size: 217
10037421 CGAACTTGTC
* * * *
10037431 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10037496 CATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10037559 AAATATTTCGAACATTCCATGCTCGGA-AAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG
130 AAAT-TTCCAAACATTCCATGCT-GGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
10037623 -TAAACAGGTTTAGGCCT-TTAAATT
193 ACAAACAAGTTTAGGACTGTT-AATT
* * * *
10037647 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
*** *
10037711 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
* *
10037775 AAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10037840 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * *
10037864 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10037929 AACTTATCTA
Statistics
Matches: 238, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 6 0.03
215 124 0.52
216 32 0.13
217 44 0.18
218 32 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10038100 original size:62 final size:61
Alignment explanation
Indices: 10037867--10038114 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 61
10037857 GTTAATTAAT
* * *
10037867 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10037929 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * **
10037991 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10038053 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10038115 CTTTTTCGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
61 2 0.01
62 163 0.98
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10038464 original size:62 final size:62
Alignment explanation
Indices: 10038399--10038599 Score: 305
Period size: 62 Copynumber: 3.2 Consensus size: 62
10038389 TGAGCAAACT
* * *
10038399 TCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACT
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
* * *
10038461 TCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTC-TAGGTTCTTGGACTAACA
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA-GTTCTTGGACGAACA
** *
10038523 TCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
1 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
10038585 TCCAAACTTGTCAAA
1 TCCAAACTTGTCAAA
10038600 CTTTTACGAT
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 2 0.02
62 120 0.98
63 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (62 bp):
TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
Found at i:10038825 original size:485 final size:485
Alignment explanation
Indices: 10037910--10038890 Score: 1739
Period size: 485 Copynumber: 2.0 Consensus size: 485
10037900 CTCTTGGACG
* *
10037910 AACTTTCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAAC
1 AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
* *
10037975 TTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
66 TTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATC
* *
10038040 TGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
131 TGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAA
* * *
10038105 ACTTGACAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATT
196 ACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATT
10038170 CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
261 CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
10038235 CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
326 CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
*
10038300 GTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
391 GTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
10038365 AGCATACAAGACGATCCATTCCTTTGAGCA
456 AGCATACAAGACGATCCATTCCTTTGAGCA
* *
10038395 AACTTCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACGAA
1 AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAA
10038459 CTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
65 CTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
*
10038524 CTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
130 CTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
* * *
10038589 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCAT
195 AACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCAT
* * * *
10038654 TCCTTCTAGAAATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
260 TCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
10038719 TCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
325 TCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
* *
10038784 GGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTC
390 GGTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTA
10038849 AAGCATACAAGACGATCCATTCCTTTGAGCA
455 AAGCATACAAGACGATCCATTCCTTTGAGCA
*
10038880 AATTTCCAAAC
1 AACTTCCAAAC
10038891 ATTCCATGCT
Statistics
Matches: 472, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
485 470 1.00
486 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (485 bp):
AACTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATC
TGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAA
ACTTGACAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCATT
CCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
GTTGTTGGACGAACATTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
AGCATACAAGACGATCCATTCCTTTGAGCA
Found at i:10038917 original size:215 final size:217
Alignment explanation
Indices: 10038535--10039032 Score: 621
Period size: 215 Copynumber: 2.3 Consensus size: 217
10038525 TGAACTTGTC
*
10038535 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
* * * * * **
10038600 CTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10038665 ATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10038729 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * *
10038751 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACATTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
* * *** *
10038815 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10038879 AAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10038942 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* * * * *
10038968 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
10039033 AACTTATCTA
Statistics
Matches: 239, Mismatches: 36, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 128 0.54
216 32 0.13
217 46 0.19
218 30 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10039071 original size:62 final size:61
Alignment explanation
Indices: 10038971--10039218 Score: 336
Period size: 62 Copynumber: 4.0 Consensus size: 61
10038961 GTTAATTAAT
*
10038971 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10039033 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10039095 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10039157 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
10039219 CTTTTTCGAT
Statistics
Matches: 169, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
61 4 0.02
62 163 0.96
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10039556 original size:215 final size:217
Alignment explanation
Indices: 10039154--10039632 Score: 576
Period size: 215 Copynumber: 2.2 Consensus size: 217
10039144 TGAACTTGTC
* *
10039154 AAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
** * * * * ** *
10039219 CTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAA
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * *
10039284 ATATTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TA
131 ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10039348 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * * *
10039370 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * ** *
10039434 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
*
10039498 AAAT-TTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10039561 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* *
10039587 AATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGAC
1 AA-AAACTTACTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
10039633 AAACTTCAAA
Statistics
Matches: 222, Mismatches: 32, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
214 3 0.01
215 128 0.58
216 31 0.14
217 21 0.09
218 29 0.13
219 10 0.05
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (217 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10039580 original size:619 final size:620
Alignment explanation
Indices: 10038393--10039714 Score: 2337
Period size: 619 Copynumber: 2.1 Consensus size: 620
10038383 TTCCTTTGAG
* * *
10038393 CAAACTTCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACG
1 CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGATG
10038457 AACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAAC
65 AACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAAC
*
10038522 ATCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
130 ATCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
* *
10038587 CAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCC
195 CAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCC
* * * *
10038652 ATTCCTTCTAGAAATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTT
260 ATTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTT
10038717 TGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
325 TGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
10038782 TTGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCT
390 TTGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCT
*
10038847 TCAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCAC
455 TAAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCAC
10038912 ATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAA-TAACTT
520 ATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTT
10038976 AGTTACGTGAGAATTGTTTCTCTCTTAG-CTCTTGGA
585 AGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGA
* *
10039012 CGAACTTTCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
1 CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
* *
10039077 ACTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACA
66 ACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACA
*
10039142 TCTGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
131 TCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
* * * *
10039207 GAACTTGTCAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCA
196 AAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCA
*
10039272 TTCCTTCTAGAAATATTTCAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
261 TTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
*
10039337 GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCT
326 GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCT
*
10039402 TGGTTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
391 TGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
10039467 AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
456 AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
10039532 TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
521 TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
10039597 GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
586 GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
* *
10039632 CAAAC-TTCAAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
1 CAAACTTTC-AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATG
* * *
10039696 AACATCCGAAGTTGTCAAA
65 AACTTCCAAACTTGTCAAA
10039715 CTTTTACGAT
Statistics
Matches: 669, Mismatches: 30, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
618 2 0.00
619 555 0.83
620 112 0.17
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (620 bp):
CAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGA
ACTTCCAAACTTGTCAAAAACTTATTCACCTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACA
TCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
AAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCA
TTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCT
TGGTTGTTGGACGAACATTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
AAAGCATACAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACA
TCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATTAACTTA
GTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
Found at i:10039966 original size:66 final size:62
Alignment explanation
Indices: 10039893--10040056 Score: 211
Period size: 66 Copynumber: 2.6 Consensus size: 62
10039883 AATTGGTTCT
* * **
10039893 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTATTTACATGAGTACTGTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTA-A-GA--ACTGTCTC
10039958 A
62 A
* * * *
10039959 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
*
10040021 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10040057 CATTTATGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
62 40 0.45
64 2 0.02
65 1 0.01
66 45 0.51
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAACTGTCTCA
Found at i:10040035 original size:62 final size:62
Alignment explanation
Indices: 10039864--10040056 Score: 235
Period size: 62 Copynumber: 3.0 Consensus size: 62
10039854 TCCTCAAATG
* * *
10039864 AAAAACTTATTTACGT-GGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* ** * * * *
10039926 AAAGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGT
1 AAAAACTTATTTACGTA-A-GA--ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
10039991 C
62 C
*
10039992 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10040054 AAA
1 AAA
10040057 CATTTATGAT
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
62 53 0.49
64 3 0.03
65 2 0.02
66 50 0.46
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10040288 original size:215 final size:217
Alignment explanation
Indices: 10039992--10040489 Score: 596
Period size: 215 Copynumber: 2.3 Consensus size: 217
10039982 CGAACTTGTC
* * * *
10039992 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10040057 CATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10040120 AAATATTTCGAACATTCCATGCTCGGA-AAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG
130 AAAT-TTCCAAACATTCCATGCT-GGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
10040184 -TAAACAGGTTTAGGCCT-TTAAATT
193 ACAAACAAGTTTAGGACTGTT-AATT
* * * *
10040208 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
*** *
10040272 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
* *
10040336 AAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10040401 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * * *
10040425 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10040490 AACTTATTTA
Statistics
Matches: 237, Mismatches: 37, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
214 6 0.03
215 124 0.52
216 32 0.14
217 44 0.19
218 31 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10040528 original size:62 final size:62
Alignment explanation
Indices: 10040428--10040675 Score: 338
Period size: 62 Copynumber: 4.0 Consensus size: 62
10040418 GTTAATTAAT
* *
10040428 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGC-TCTTGGATGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGATGAACTTCCAAACTTGTCAAA
10040490 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
* * * * **
10040552 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA-TGAACTTCCAAACTTGTCAAA
* * * * * *
10040614 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
10040676 CTTTTTCGAT
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
61 2 0.01
62 166 0.98
63 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
Done.