Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 40 of 144
Found at i:10040722 original size:619 final size:619
Alignment explanation
Indices: 10039864--10041512 Score: 2461
Period size: 619 Copynumber: 2.7 Consensus size: 619
10039854 TCCTCAAATG
* * * *
10039864 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
* * * * * * * * *
10039928 AGACTTATTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
65 A-A---ACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCTGAACTTGTCA
* *
10039993 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
126 AAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
*
10040058 ATTTAT-GATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
191 -TTTTTCGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
* *
10040122 ATATTTCGAACATTCCATGCTCGGAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
255 ATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
10040187 ACAGGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTTGGAC
320 ACAAGTTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGAC
*
10040252 GAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAG
385 GAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAG
* *
10040317 ACGATCCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAA
450 ACGATCCATTCCTTTGAGCAAACTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAA
10040382 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
515 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
* *
10040447 TGTTTCTCTCTTGGCTCTTGGATGAACTT-T-CAAACTTGTC
580 TGTTTCTCTCTTAGCTCTTGGACG--CTTGTCCAAACTTGTC
*
10040487 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
* * *
10040552 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAACC
66 AACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCTGAACTTGTCAAAAAC
*
10040617 TTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
131 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
* * *
10040682 CGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATATTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
* *
10040747 CAAACATTTCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGT
261 CAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10040812 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTAGGTTGTTGGACGAACTT
326 TTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
10040877 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
391 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
10040942 CATTCCTTTGAGCAAACTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
456 CATTCCTTTGAGCAAACTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
10041007 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
521 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
* *
10041072 TCTCTTAGTTCTTGGACGTTTGTCCAAACTTGTC
586 TCTCTTAGCTCTTGGACGCTTGTCCAAACTTGTC
10041106 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
* * *
10041171 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTTTAAACTTGTCAAAAA
66 AACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACTTCTGAACTTGTCAAAAA
* * *
10041235 CTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAAATCTGAACTTGTCAAACTTTT
130 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * ** * * * * * * * *
10041300 ACGATTTCTTCTTAGAACTTCGGTTCCTGAAATTATCCAAGATGATCCATTCTTTCGAGCAATTT
195 TCGATTTCTT-TTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATAT
* * * * * * *
10041365 TTCAAACATCCCATTCTCAGG-AAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAGCA
259 TTCAAACATTCCATGCTC-GGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* * * * *
10041429 AGTTTCGGTCC-TTGAATTAGAAACATATTTACGTG-GCAATTGGT-TCTCTCTTGGTTCTTGGA
323 AGTTTAGG-CCTTTAAATTAAAAACTTATTTACGTGAG-AATT-GTATCTC-CTTGGTTGTTGGA
*
10041491 CGAACTTTCGAACTTGTCAAAC
384 CGAACTTTCGAACTAGTCAAAC
10041513 ACTTCTTTAC
Statistics
Matches: 935, Mismatches: 80, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
617 2 0.00
618 6 0.01
619 700 0.75
620 129 0.14
621 38 0.04
622 1 0.00
623 58 0.06
624 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (619 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
AACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCTGAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
CAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
CATTCCTTTGAGCAAACTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
TCTCTTAGCTCTTGGACGCTTGTCCAAACTTGTC
Found at i:10041294 original size:62 final size:62
Alignment explanation
Indices: 10041047--10041277 Score: 340
Period size: 62 Copynumber: 3.7 Consensus size: 62
10041037 GTTAATTAAT
* * **
10041047 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
* *
10041109 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* **
10041171 AACTT-ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTAAACTTGTCAAA
1 AACTTAATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10041233 AACTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
10041278 AATCTGAACT
Statistics
Matches: 156, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
61 2 0.01
62 150 0.96
63 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10041576 original size:54 final size:54
Alignment explanation
Indices: 10041499--10041611 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10041489 GACGAACTTT
* * * *
10041499 CGAACTTGTCAAACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10041553 CGAACTTCTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGC
1 CGAACTTCTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10041607 CGAAC
1 CGAAC
10041612 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (54 bp):
CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10041756 original size:332 final size:336
Alignment explanation
Indices: 10041106--10041843 Score: 884
Period size: 332 Copynumber: 2.2 Consensus size: 336
10041096 CAAACTTGTC
* * * *
10041106 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10041171 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTAAACTTGTCAAAAAC
66 CACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAAC-TTT--AC-T-TCAAAAAC
* * * *
10041236 TTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAAAATCTGAACTTGTCAAACTTTTA
126 TTAATTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAACATTTA
* * * *
10041301 CGATTTCTTCTTAGAACTTCGGTTCCTGAAATTATCCAAGATGATCCATTCTTTCGAGCAATTTT
191 CGATTTCTTCTTAGAACTTCGGTTCCTAAAATTATCCAAGATAATCCATTCCTTCGAGAAATTTT
* * * * * * *
10041366 TCAAACATCCCATTCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAGCAAG
256 TCAAACATCCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA
*
10041431 TTTCGGT-CCTTGAATT
321 TTT-GGTCCCTTAAATT
* * *
10041447 AGAAACATATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGCTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10041511 ACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC-TT-C-TCGAAAACTTAT
65 ACACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTACTTCAAAAACTTAA
* *
10041573 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACATCCGAACTTGTCAAACATTTATC-A
130 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAACATTTA-CGA
* * * * *
10041637 TTTCTT-TTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTT
194 TTTCTTCTTAGAACTTCGGTTCCTAAAAT-TATCCAAGATAATCCATTCCTTCGAGAAATTTTTC
* * *
10041700 GAACATTCCATGCTC-GAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
258 AAACATCCCATGCTCAG-AAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
*
10041764 TTTGTCCCTTAAATT
322 TTGGTCCCTTAAATT
* * * *
10041779 AAAAACTTATTTACGTGAGAATTGCATCTC-CTTGGTTGTTGGACAAAATTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10041843 C
66 C
10041844 TTTCACGAGT
Statistics
Matches: 341, Mismatches: 50, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
331 39 0.11
332 129 0.38
333 73 0.21
334 1 0.00
336 1 0.00
339 2 0.01
340 1 0.00
341 95 0.28
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (336 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTACTTCAAAAACTTAAT
TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAACATTTACGATT
TCTTCTTAGAACTTCGGTTCCTAAAATTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCAAA
CATCCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTGG
TCCCTTAAATT
Found at i:10042097 original size:62 final size:62
Alignment explanation
Indices: 10041999--10042556 Score: 868
Period size: 62 Copynumber: 9.0 Consensus size: 62
10041989 GTTAATTAAT
* * **
10041999 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10042061 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10042123 AACTTATTTACGTGATAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10042185 AACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
**
10042247 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10042309 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10042371 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10042433 AACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10042495 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10042557 CTTTTACGAT
Statistics
Matches: 456, Mismatches: 37, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
62 454 1.00
63 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10042857 original size:54 final size:54
Alignment explanation
Indices: 10042760--10042868 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 54
10042750 GACGAACTTT
* * * *
10042760 CGAACTTGTCAAAGACTTATTTACGTGAGTACTATTTCACTCTTGGTTCTTGGA
1 CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
* * *
10042814 CGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
10042868 C
1 C
10042869 CAACATCAGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (54 bp):
CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10043003 original size:332 final size:333
Alignment explanation
Indices: 10042368--10043103 Score: 953
Period size: 332 Copynumber: 2.2 Consensus size: 333
10042358 CAAACTTGTC
* * * *
10042368 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAA
* * * * *
10042433 AACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
65 AACTTAATTACGTGAGAACTATTTCACTCTTGGTTCTTGG----A-A-CCGAAATTGTCAAAAAC
* ** *
10042498 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
124 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTTA
* * * *
10042563 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTT
189 CGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTT
* ** * * * * *
10042628 CGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGT
254 CGAACATCCCAAGCTCGAAAAATCCCATAATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGT
**
10042693 TTCGGTCC-TTGCATT
319 TTCGG-CCTTTAAATT
*
10042708 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAA
* * *
10042773 GACTTATTTACGTGAGTACTATTTCACTCTTGGTTCTTGG-A-CGAAATTGTCAAAAACTTATTT
65 AACTTAATTACGTGAGAACTATTTCACTCTTGGTTCTTGGAACCGAAATTGTCAAAAACTTATTT
10042836 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTTACGATTT
130 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTTACGATTT
* * * *
10042901 CTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAC
195 CTTTTATAACTTCGGTTCCTAAAA-GTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAC
* * *
10042965 ATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
259 ATCCCAAGCTCGAAAAATCCCATAATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGG
10043030 CCTTTAAATT
324 CCTTTAAATT
* * *
10043040 AAAAACTTATTTACGTTAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACG-TGGAATTGGT-TCTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAA
10043103 A
64 A
10043104 CTTTCACGAG
Statistics
Matches: 350, Mismatches: 41, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
331 39 0.11
332 216 0.62
333 2 0.01
334 1 0.00
339 1 0.00
340 91 0.26
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCGAACTTGTCAAAA
ACTTAATTACGTGAGAACTATTTCACTCTTGGTTCTTGGAACCGAAATTGTCAAAAACTTATTTA
CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTTACGATTTC
TTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAT
CCCAAGCTCGAAAAATCCCATAATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGCC
TTTAAATT
Found at i:10043206 original size:215 final size:216
Alignment explanation
Indices: 10042824--10043321 Score: 596
Period size: 215 Copynumber: 2.3 Consensus size: 216
10042814 CGAAATTGTC
* *
10042824 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTC-GAACTTGTCAAA
* * * *
10042889 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAATGCATTCAAGTTAATCCATTCCTTCTAGAA
*** * * *
10042954 ATTTTTTGAACATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTG-TA
130 ATTTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTTGACA
*
10043018 AACAAGTTTTGGCCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
* * * *
10043040 AAAAACTTATTTACGTTAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC-TTCGAACTTGTCAAA
** *
10043104 CTTTCACGAGTTCTTTTATAACTTAGGTTTCTTAAA-GCATTCAAGATT-TTCCATTCCTT-TGA
65 CTTTCACGAGTTCTTTTATAACTTAGG-TTCCAAAATGCATTCAAG-TTAATCCATTCCTTCT-A
* * * *
10043166 GCAAA-TTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTT
127 G-AAATTTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTT
10043230 GACCAAACAAGTTTTGGACTGTTAATT
191 GA-CAAACAAGTTTTGGACTGTTAATT
* * * * * *
10043257 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC-TTCGAACTTGTCAAA
10043322 AACTTATTTA
Statistics
Matches: 240, Mismatches: 33, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 1 0.00
215 123 0.51
216 41 0.17
217 45 0.19
218 30 0.12
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAATGCATTCAAGTTAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTTGGACTGTTAATT
Found at i:10043358 original size:62 final size:62
Alignment explanation
Indices: 10043260--10043507 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10043250 GTTAATTAAT
* * * *
10043260 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10043322 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10043384 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
10043446 AACTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10043508 CTTTTACGAT
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 173 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10043789 original size:54 final size:54
Alignment explanation
Indices: 10043712--10043824 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
10043702 GACGAACTTT
* * * *
10043712 CGAACTTGTCAAACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * *
10043766 CGAACTTCTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTCTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10043820 CGAAC
1 CGAAC
10043825 ATCCGAACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 48 0.94
55 3 0.06
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (54 bp):
CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10043834 original size:403 final size:397
Alignment explanation
Indices: 10043040--10043840 Score: 920
Period size: 403 Copynumber: 2.0 Consensus size: 397
10043030 CCTTTAAATT
* * * *
10043040 AAAAACTTATTTACGTTAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTAATTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTCTCGAACTTGTCAAAC
* * * * **
10043105 TTTCACGAGTTCTTTTATAACTTAGGTTTCTTAAAGCATTCAAGATTTTCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTAGAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTTGAGCAA
* * *
10043170 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTTCATTTTGACCA
131 ATTTCCAAACATCCCACGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGA-CA
* * * *
10043235 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGG
* * * *
10043300 ACAAACGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
260 ACAAACGTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACG
*
10043365 AACTTCCAAACTTGTCAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
325 AACTT----AC-T-TCAAAAACTTATTCACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10043430 TTCT-AAACTTGTC
384 TTCTCAAACTTGTC
* *
10043443 AAAAACTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCT-GAACTTGTCAA
1 AAAAACTTAATTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAAC-TCTCGAACTTGTCAA
* * * **
10043507 ACTTTTACGATTTCTTCTTAGAACTTCGGTTCCTGAAATTATCCAAGATGATCCATT-CTTTCGA
64 ACTTTCACGAGTTCTT-TTAGAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTT-GA
* * * ** * * * *
10043571 GCAATTTTTCGAACATCCCATTCTC-AGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTT
127 GCAAATTTCCAAACATCCCACGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGTCATTTT
* * * * *
10043635 G-TAAGCAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGT
191 GACAAACAAGTTTCGG-ACTGTGAATTAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGT
* * * * * * *
10043697 TCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCT
254 TCTTGGACAAACGTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCT
* *
10043762 TGGACGAACTT-C-TCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
319 TGGACGAACTTACTTCAAAAACTTATTCACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
10043825 ATC-CGAACTTGTC
384 TTCTCAAACTTGTC
10043838 AAA
1 AAA
10043841 CTTTTATGAT
Statistics
Matches: 336, Mismatches: 54, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
395 61 0.18
398 1 0.00
402 1 0.00
403 138 0.41
404 49 0.15
405 86 0.26
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (397 bp):
AAAAACTTAATTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTCTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTAGAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTTGAGCAA
ATTTCCAAACATCCCACGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CAAACGTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGA
ACTTACTTCAAAAACTTATTCACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTCAA
ACTTGTC
Found at i:10044176 original size:214 final size:216
Alignment explanation
Indices: 10043777--10044253 Score: 518
Period size: 214 Copynumber: 2.2 Consensus size: 216
10043767 GAACTTCTCG
** *
10043777 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGCATCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
* * * * * * *
10043842 TTTTATGATTTCTTTTATAACTTGGGTTCCAAAATGTAGTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTGTTATAACTTGGGCTCCAAAATGCAGTCAAGATAATCCATTCCTTCTAGAAA
*** * *
10043907 TTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 TTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
10043972 CAAATTTTGTCCCTTAAATTA
196 CAAATTTTGTCCCTTAAATTA
* * * *
10043993 AAAACTTATTTACGTGA-AATTGCATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAA
1 AAAACTTATTTACGTAAGAATTGCATCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
* * *
10044056 TTTCACGAGTTCTGTTATAAC-TGAGGCTCCTTAAA-GCATTCAAGATGATCCATTCCTT-TAAG
66 TTTCACGAGTTCTGTTATAACTTG-GGCTCC-AAAATGCAGTCAAGATAATCCATTCCTTCT-AG
* * *
10044118 CAAA-TTTCCAAACATTTCATGCTCGAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
128 -AAATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * **
10044182 ACCAAACAAGATTTGGACAGTT-AATTA
192 --TAAACAA-ATTTTGTCCCTTAAATTA
* * * ** *
10044209 ATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG
1 AAAACTTATTTACGTAAGAATTGCATCTCTCTTGGTTCTTGGACG
10044254 TTTGTCCAAA
Statistics
Matches: 216, Mismatches: 36, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
213 3 0.01
214 126 0.58
215 15 0.07
216 42 0.19
217 17 0.08
218 13 0.06
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
AAAACTTATTTACGTAAGAATTGCATCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
TTTCACGAGTTCTGTTATAACTTGGGCTCCAAAATGCAGTCAAGATAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAATTTTGTCCCTTAAATTA
Found at i:10044181 original size:951 final size:950
Alignment explanation
Indices: 10042309--10044458 Score: 3672
Period size: 951 Copynumber: 2.3 Consensus size: 950
10042299 ACTTGTCAAA
* * *
10042309 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACGTCCAAACTTGTCAAAAAC
* *
10042374 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT-
* * * * *
10042439 ATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTATTT
130 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATT
*
10042504 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATTT
195 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
*
10042569 CTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACA
260 CTTTTAGAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACA
* *
10042634 TCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGT
325 TCCCATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGT
*
10042699 CCTTGCATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAA
390 CCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAA
* * *
10042764 CTTGTCAAAGACTTATTTACGTGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAA
455 CTTGTCAAACACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTCTCAAAAA
10042829 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTT
520 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTT
*
10042894 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
585 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTAGTCAAGTTAATCCATTCCTTCTAGAAATTTT
*
10042959 TTGAACATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAG
650 TTGAACATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAA
* * *
10043024 TTTTGGCCTTTAAATTAAAAACTTATTTACGTTAGAATTGTATCTCCTTGGTTGTTGGACGAACT
715 TTTTGGCCCTTAAATTAAAAACTTATTTACGTGAGAATTGCATCTCCTTGGTTGTTGGACGAACT
* * * * * **
10043089 TTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTTCTTAAAGCATTCAAGATTTT
780 TTCGAACTTGTCAAAATTTCACGAGTTCTGTTATAACTGAGGCTCCTTAAAGCATTCAAGATGAT
*
10043154 CCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAG
845 CCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAG
* * *
10043219 TTTTTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAAT
910 TTTGTCATTTTGACCAAACAAGATTTGGACAGTTAATTAAT
*
10043260 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACGTCCAAACTTGTCAAAAAC
*
10043325 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
*
10043390 TTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAATT
131 TT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATT
* *
10043455 ACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTACGATTT
195 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
*
10043520 CTTCTTAGAACTTCGGTTCCTGAAATTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAAC
260 CTT-TTAGAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAAC
* *
10043585 ATCCCATTCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAGCAAGTTTCGG
324 ATCCCATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGG
*
10043650 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGA
389 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGA
* * * *
10043715 ACTTGTCAAACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCTCGAAA
454 ACTTGTCAAACACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTCTCAAAA
* *
10043780 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
519 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTT
* *
10043845 TATGATTTCTTTTATAACTTGGGTTCCAAAATGTAGTCAAGTTAATCCATTCCTTCTAGAAATTT
584 TACGATTTCTTTTATAACTTCGGTTCCAAAATGTAGTCAAGTTAATCCATTCCTTCTAGAAATTT
* *
10043910 TTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
649 TTTGAACATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAA
*
10043975 ATTTTGTCCCTTAAATTAAAAACTTATTTACGTGA-AATTGCATCTCCTTGGTTGTTGGACGAAC
714 ATTTTGGCCCTTAAATTAAAAACTTATTTACGTGAGAATTGCATCTCCTTGGTTGTTGGACGAAC
10044039 TTTCGAACTTGTCAAAATTTCACGAGTTCTGTTATAACTGAGGCTCCTTAAAGCATTCAAGATGA
779 TTTCGAACTTGTCAAAATTTCACGAGTTCTGTTATAACTGAGGCTCCTTAAAGCATTCAAGATGA
* * *
10044104 TCCATTCCTTTAAGCAAATTTCCAAACATTTCATGCTCGAGAAATCACATCATTTGGTGAAAATA
844 TCCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATA
10044169 GTTTGTCATTTTGACCAAACAAGATTTGGACAGTTAATTAAT
909 GTTTGTCATTTTGACCAAACAAGATTTGGACAGTTAATTAAT
***
10044211 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTGTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACGTCCAAACTTGTCAAAAAC
* *
10044276 TTATTTACGTGAGAATTGCTTCTCTCATGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10044341 TTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTAATT
131 -TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATT
*
10044406 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
195 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10044459 AACTTATTTA
Statistics
Matches: 1126, Mismatches: 70, Indels: 6
0.94 0.06 0.00
Matches are distributed among these distances:
950 3 0.00
951 661 0.59
952 462 0.41
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (950 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACGTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTAGAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAT
CCCATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC
CTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAAC
TTGTCAAACACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTCTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCAGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAATGTAGTCAAGTTAATCCATTCCTTCTAGAAATTTTT
TGAACATTCCAAGCTCGAAAAATCCCATCATTTCGTCTAAATAGTTTGTCATTTTGTAAACAAAT
TTTGGCCCTTAAATTAAAAACTTATTTACGTGAGAATTGCATCTCCTTGGTTGTTGGACGAACTT
TCGAACTTGTCAAAATTTCACGAGTTCTGTTATAACTGAGGCTCCTTAAAGCATTCAAGATGATC
CATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGT
TTGTCATTTTGACCAAACAAGATTTGGACAGTTAATTAAT
Found at i:10044309 original size:62 final size:62
Alignment explanation
Indices: 10044211--10044520 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
10044201 GTTAATTAAT
* * **
10044211 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
* *
10044273 AACTTATTTACGTGAGAATTGCTTCTCTCATGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10044335 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10044397 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10044459 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10044521 CTTTTACGAT
Statistics
Matches: 228, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
62 227 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10044946 original size:332 final size:332
Alignment explanation
Indices: 10043319--10045731 Score: 2306
Period size: 332 Copynumber: 7.2 Consensus size: 332
10043309 CAAACTTGTC
* * * * *
10043319 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAA
* * * * * *
10043383 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG-------AAA-TTGTCAAAAA
* * * *
10043448 CTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTT
122 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* *
10043513 ACGATTTCTTCTTAGAACTTCGGTTCCTGAAATTATCCAAGATGATCCATTCTTTCGAGCAATTT
187 ACGATTTCTT-TTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTT
* * * *
10043578 TTCGAACATCCCATTCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAGCAA
251 TTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAA
10043643 GTTTCGGTCCTTGAATT
316 GTTTCGGTCCTTGAATT
*
10043660 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
* * * * *
10043725 CACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCTCGAAAACTTATTTAC
66 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
*
10043790 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTCT
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* * * * * * * *
10043855 TTTATAACTTGGGTTCC-AAAATGTAGT-CAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACA
196 TTTATAACTTCGGTTCCTGAAA-GTA-TCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACA
* ** * * * * * * *
10043918 TTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT-TGT
259 TCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGT
*
10043982 CCCTTAAATT
324 -CCTTGAATT
* ** * *
10043992 AAAAACTTATTTACGT-GAAATTGCATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC-AA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
* * * ** * * * * * *
10044054 -A---ATTT-CACGAGTTCTGTTATAACT-GAGGCTCCTT-AAAG-CA-T-TC-AAGA-TGATCC
66 GACTTATTTACATGAGTACTGTT-TCACTCTTGG-TTCTTGGACGAAATTGTCAAAAACTTAT--
* * * * *** * * ** * * *
10044107 ATTCCTTTAAGCAAAT-TTCCAAACAT--TTCATGCTCGAGAAATCAC-ATCATTTGGTGAAA--
127 -TTAC-GTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGA-ACATC-CGA--ACTT-GTCAAACT
* * * * * * * * * ** *
10044166 -ATA-GTTTGTCATTTTGACCAAACAAGATTTGG-ACAGTTAATTAATAACTTAGTTACGTGA-G
184 TTTACGATT-TC-TTTT-A--TAAC----TTCGGTTC-CTGAA--AGTATCCAAG--A--TGATC
* * *** * * * * * ** * ** *** * *
10044227 AATTGTTTCTCTCTTAGTTCTT-GGACGTTTGTCCAAACTTGTCAA-AAAC-TTATTTACGTG-A
233 CATTCTTTCGAGC--AATTTTTCGAAC--AT-CCCATGCTCGGGAAGTCGCATAATTT-GGTGTA
* * * * **** *
10044288 GAATTGCTTCTCTCATGGTTCTTG--GACGAA-CTTCCAAACTTG--TC
292 -AATAG-TT-TGTC-T--TT-TTGTAAAC-AAGTTTCGGTCCTTGAATT
* * * * *
10044332 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAA
* * * * * * *
10044396 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAA
65 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG------A--CGAAATTGTCAAAAA
* *
10044461 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTT
122 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
10044526 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTT
187 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTT
10044591 TCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAG
252 TCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAG
10044656 TTTCGGTCCTTGAATT
317 TTTCGGTCCTTGAATT
10044672 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
* *
10044737 GACTTATTTATATGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
66 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
*
10044802 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGATTT-T
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
10044866 GTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAT
196 -TTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAT
10044931 CCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC
260 CCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC
*
10044996 CTTGCATT
325 CTTGAATT
10045004 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
* *
10045069 GACTTATTTACGTGAGTACTATTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
66 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
* *
10045134 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGATTTCG
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
*
10045199 TTTATAACTTTGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATC
196 TTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATC
* * *
10045264 CCATGCTCAGGAAGTCGCATAATTTGGTGTTAATAGTTTGTCTTTTTGTAAATAAGTTTCGGTCC
261 CCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC
*
10045329 TTGCATT
326 TTGAATT
*
10045336 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
* *
10045401 GACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGCACGAAATTGTCAAAAACTTATTTAC
66 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
*
10045466 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGATTTCT
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* * ** ** * * * * *
10045531 TTTATAACTTTGGTTCC-AAAATGTATTAAATTTAATCCATTCCTTCTAGAAATTTTTTGAACAT
196 TTTATAACTTCGGTTCCTGAAA-GTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAT
* * * * * * * * * *
10045595 TCCATGCTCAGAAAATCCCATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGG-C
260 CCCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC
*
10045659 CTTTAACTT
325 CTTGAA-TT
* * * * *
10045668 AATAACTTATTTAAGTTAG-AATT-GTATCTC-CTTGGTTGTTAGACGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACG-TGGCAATTGGT-TCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCA
10045730 AA
64 AA
10045732 CTTTCACGAG
Statistics
Matches: 1715, Mismatches: 258, Indels: 208
0.79 0.12 0.10
Matches are distributed among these distances:
319 3 0.00
320 3 0.00
321 13 0.01
322 13 0.01
323 14 0.01
324 22 0.01
325 16 0.01
326 3 0.00
328 1 0.00
329 3 0.00
330 34 0.02
331 59 0.03
332 983 0.57
333 82 0.05
334 3 0.00
335 7 0.00
336 8 0.00
337 15 0.01
338 17 0.01
339 13 0.01
340 115 0.07
341 114 0.07
342 43 0.03
343 17 0.01
344 10 0.01
345 8 0.00
346 1 0.00
347 10 0.01
348 16 0.01
350 7 0.00
351 1 0.00
354 4 0.00
355 5 0.00
356 8 0.00
357 13 0.01
358 13 0.01
359 12 0.01
360 3 0.00
361 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (332 bp):
AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTCGACGAACTTTCGAACTTGTCAAA
GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAATTGTCAAAAACTTATTTAC
GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATC
CCATGCTCGGGAAGTCGCATAATTTGGTGTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC
TTGAATT
Found at i:10045153 original size:54 final size:54
Alignment explanation
Indices: 10045056--10045164 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 54
10045046 GACGAACTTT
* * * *
10045056 CGAACTTGTCAAAGACTTATTTACGTGAGTACTATTTCACTCTTGGTTCTTGGA
1 CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
* * *
10045110 CGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
10045164 C
1 C
10045165 CAACATCCGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (54 bp):
CGAAATTGTCAAAAACTTATTTACGTAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10045485 original size:54 final size:54
Alignment explanation
Indices: 10045388--10045493 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 54
10045378 GACAAACTTT
* * * *
10045388 CGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGCA
1 CGAAATTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGCA
* * * *
10045442 CGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
1 CGAAATTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTG
10045494 GACCAACATC
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (54 bp):
CGAAATTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGCA
Found at i:10045977 original size:62 final size:62
Alignment explanation
Indices: 10045879--10046126 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10045869 GTTAATTAAT
* * * *
10045879 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10045941 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10046003 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
10046065 AACTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10046127 CTGTTACGAT
Statistics
Matches: 173, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 173 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10046875 original size:62 final size:62
Alignment explanation
Indices: 10046775--10047084 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10046765 GTTAATTAAT
* * * *
10046775 AACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10046837 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10046899 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10046961 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10047023 AACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10047085 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10047331 original size:62 final size:60
Alignment explanation
Indices: 10047265--10047417 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 60
10047255 AATTGGTTCC
* *
10047265 CTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC-TTTGAAC-TGTCAAACACTTATTTACATAAGAACTGTTTCA
* * * * * *
10047327 CTCTTGGTTCGTGGATGAAC-TTG-TC-G--AAA-ACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTGAACTGTCAAACACTTATTTACATAAGAACTGTTTCA
*
10047381 CTCTTGGTTCTTGAACGAACATTTGAACTTGTCAAAC
1 CTCTTGGTTCTTGGACGAAC-TTTGAAC-TGTCAAAC
10047418 TTTTACGATT
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
54 37 0.52
55 3 0.04
56 3 0.04
57 2 0.03
59 2 0.03
60 3 0.04
61 3 0.04
62 18 0.25
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.39
Consensus pattern (60 bp):
CTCTTGGTTCTTGGACGAACTTTGAACTGTCAAACACTTATTTACATAAGAACTGTTTCA
Found at i:10047523 original size:332 final size:333
Alignment explanation
Indices: 10046896--10047755 Score: 1014
Period size: 332 Copynumber: 2.5 Consensus size: 333
10046886 CAAACTTGTC
* * *
10046896 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10046961 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG----A-AT--GAACTTGTCAAAAAC
* * * *
10047026 TTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTA
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10047091 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
189 CGATTTCTTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTT
* * ** * *
10047156 CGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAGT
254 CGAAAATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
*
10047221 TTCGGTCC-TTGAATT
319 TTCGG-CCTTTAAATT
* * *
10047236 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10047300 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGG-ATGAACTTGTCGAAAACTTATTT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTT
* * **
10047364 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATTTGAACTTGTCAAACTTTTACGATTT
130 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * * * *
10047429 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
195 CTTTTACAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAA
* * *
10047493 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
259 A-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10047557 GCCTTTAAATT
323 GCCTTTAAATT
* *
10047568 AAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10047631 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT-G--GAA----TGAACTTGTCAAAAA
* * *
10047696 CTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10047756 AACTTAATTA
Statistics
Matches: 437, Mismatches: 69, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
331 68 0.16
332 206 0.47
333 4 0.01
334 3 0.01
335 1 0.00
339 67 0.15
340 88 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAAAT
CCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGCC
TTTAAATT
Found at i:10047694 original size:62 final size:62
Alignment explanation
Indices: 10047568--10048003 Score: 651
Period size: 62 Copynumber: 7.0 Consensus size: 62
10047558 CCTTTAAATT
* * *
10047568 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTT-TCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTC
* *
10047629 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* * * * *
10047691 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* * * *
10047753 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* **
10047815 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* *
10047877 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
* * *
10047939 AAAAACTTAATTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
10048001 AAA
1 AAA
10048004 CTATTACGAT
Statistics
Matches: 347, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
61 28 0.08
62 318 0.92
63 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
Found at i:10048285 original size:54 final size:54
Alignment explanation
Indices: 10048208--10048320 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
10048198 GACGAACTTT
* * * *
10048208 CGAACTTGTCAAACACTTCTTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * *
10048262 CGAACTTCTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTCTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10048316 CGAAC
1 CGAAC
10048321 ATCCGAACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 48 0.94
55 3 0.06
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (54 bp):
CGAACTTCTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10048758 original size:62 final size:62
Alignment explanation
Indices: 10048658--10048967 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10048648 GTTAATTAAT
* * * *
10048658 AACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10048720 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10048782 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10048844 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10048906 AACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10048968 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10049243 original size:54 final size:54
Alignment explanation
Indices: 10049171--10049273 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
10049161 GACGAACTTT
* *
10049171 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
* * * *
10049225 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTC
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTC
10049274 TTGAACGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 39 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
Found at i:10049406 original size:332 final size:333
Alignment explanation
Indices: 10048779--10049638 Score: 1023
Period size: 332 Copynumber: 2.5 Consensus size: 333
10048769 CAAACTTGTC
* * *
10048779 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10048844 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG----A-AT--GAACTTGTCAAAAAC
* * * *
10048909 TTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTA
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10048974 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
189 CGATTTCTTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTT
* * ** * *
10049039 CGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAGT
254 CGAAAATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
*
10049104 TTCGGTCC-TTGAATT
319 TTCGG-CCTTTAAATT
* * *
10049119 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10049183 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGG-ATGAACTTGTCGAAAACTTATTT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTT
* * *
10049247 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAACTTTTACGATTT
130 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * * * *
10049312 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
195 CTTTTACAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAA
* * *
10049376 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
259 A-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10049440 GCCTTTAAATT
323 GCCTTTAAATT
* *
10049451 AAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10049514 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT-G--GAA----TGAACTTGTCAAAAA
* * *
10049579 CTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10049639 AACTTAATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
331 68 0.15
332 207 0.47
333 4 0.01
334 3 0.01
335 1 0.00
339 68 0.15
340 88 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAAAT
CCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGCC
TTTAAATT
Found at i:10049577 original size:62 final size:62
Alignment explanation
Indices: 10049451--10049762 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10049441 CCTTTAAATT
* * * * *
10049451 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10049512 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10049574 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10049636 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10049698 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10049760 AAA
1 AAA
10049763 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10050551 original size:62 final size:62
Alignment explanation
Indices: 10050453--10050762 Score: 451
Period size: 62 Copynumber: 5.0 Consensus size: 62
10050443 GTTAATTAAT
* * **
10050453 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10050515 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10050577 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10050639 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10050701 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10050763 CTTTTACGAT
Statistics
Matches: 227, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 226 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10051043 original size:54 final size:54
Alignment explanation
Indices: 10050966--10051078 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10050956 GACGAACTTT
* * *
10050966 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10051020 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10051074 CGAAC
1 CGAAC
10051079 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10051206 original size:332 final size:335
Alignment explanation
Indices: 10050574--10051269 Score: 891
Period size: 332 Copynumber: 2.1 Consensus size: 335
10050564 CAAACTTGTC
* *
10050574 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10050639 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAAAAC
66 AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTT-G--T-ACA-CCGAACTTCTCAAAAAC
* *
10050704 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
126 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
10050769 CGATTTCTTTTATAACTTCGGTTCCGGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTT
191 CGATTTCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTT
***** * * * *
10050834 CGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAGCAAGT
256 CGAACATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
* *
10050899 TTCGGTCCTTGAATT
321 TTCGGCCCTTAAATT
** * * *
10050914 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAA
* ** * * * *
10050978 ACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTT-T-GA-CGAACTTGTCGAAAATTTAT
65 AAACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTAT
*
10051040 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGAT
130 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGAT
* * * *
10051105 TTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGA
195 TTCTTTTATAACTTCGGTTCCGAAAA-GTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
* *
10051169 ACATTCCATGCTCGAAAAATC-CTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
259 ACATCCCATGCTCGAAAAATCGC-ATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
*
10051233 TGGCCCTTAAATT
323 CGGCCCTTAAATT
10051246 AAAAACTTATTTACGTGAGAATTG
1 AAAAACTTATTTACGTGAGAATTG
10051270 CATCTCCTTT
Statistics
Matches: 309, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
331 4 0.01
332 214 0.69
333 1 0.00
334 1 0.00
336 1 0.00
339 1 0.00
340 87 0.28
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (335 bp):
AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAC
ATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTCGG
CCCTTAAATT
Found at i:10051516 original size:62 final size:62
Alignment explanation
Indices: 10051416--10051725 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10051406 GTTAATTAAT
* * * *
10051416 AACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10051478 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10051540 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10051602 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10051664 AACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10051726 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10052001 original size:54 final size:54
Alignment explanation
Indices: 10051929--10052031 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
10051919 GACGAACTTT
* *
10051929 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
* * * *
10051983 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTC
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTC
10052032 TTGAACGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 39 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
Found at i:10052164 original size:332 final size:333
Alignment explanation
Indices: 10051537--10052396 Score: 1023
Period size: 332 Copynumber: 2.5 Consensus size: 333
10051527 CAAACTTGTC
* * *
10051537 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10051602 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG----A-AT--GAACTTGTCAAAAAC
* * * *
10051667 TTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTA
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10051732 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
189 CGATTTCTTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTT
* * ** * *
10051797 CGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAGT
254 CGAAAATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
*
10051862 TTCGGTCC-TTGAATT
319 TTCGG-CCTTTAAATT
* * *
10051877 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10051941 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGG-ATGAACTTGTCGAAAACTTATTT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTT
* * *
10052005 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAACTTTTACGATTT
130 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * * * *
10052070 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
195 CTTTTACAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAA
* * *
10052134 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
259 A-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10052198 GCCTTTAAATT
323 GCCTTTAAATT
* *
10052209 AAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10052272 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT-G--GAA----TGAACTTGTCAAAAA
* * *
10052337 CTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10052397 AACTTAATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
331 68 0.15
332 207 0.47
333 4 0.01
334 3 0.01
335 1 0.00
339 68 0.15
340 88 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAAAT
CCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGCC
TTTAAATT
Found at i:10052199 original size:963 final size:976
Alignment explanation
Indices: 10049376--10052246 Score: 4257
Period size: 963 Copynumber: 2.9 Consensus size: 976
10049366 TTTTTTGAAA
* * *
10049376 ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA--AAA-AAGTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG-ACCAAACAAGTTT
* * * * * *
10049438 TGGCCT-TTAAATTAAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTT
65 TGGACTGTT-AATTAATAACTTAATTACGTGAGAATTGT-TCTCTCTTAGTTCTTGGACGAACTT
* * * *
10049501 TCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTA
128 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
10049566 AACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAAC
193 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
10049631 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
258 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
10049696 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
323 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
* *
10049761 AACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTTGAG
388 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
* *
10049826 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGTATAATTTTGTCTAAATAGTTTGCCTTTTTGT
453 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
* ** * *
10049891 AAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTTGGTTCTTG
518 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
* * *
10049956 GACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGTTCTTGGAC
583 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
* *
10050021 GAACTTGTCAAAAACTTATTTACGT-A-ACTTG--T-T-TCTT-G-----GACGAACAT-TAGAA
648 GAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGACGAACATCT-GAA
10050073 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
712 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
10050138 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
777 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
* *
10050203 ATTTTCTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
842 ATTTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC-T--
*
10050268 TTGTTGGACGAACTTTCGAACTTGTCAAAATTTCACAAGTTCTTTTATAACTGAGGTTCCTTAAA
904 TTGTT-GACG-----T-G-AC-T-TC---ACTTCACAAG--------T--C-GA-GTTCC-T-AA
10050333 GCATTCAAAACGATCCATTCCTTTAAGCAAATTTCCAAAC
942 GCATT----A-GATCCATTCCTTTAAGCAAATTTCCAAAC
*****
10050373 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAAT-GACAAACTATTTTGACCAAACAAGTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTC-ATTTTGACCAAACAAGTTT
* * * **
10050437 TGGATTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGT
65 TGGACTGTTAATTAATAACTTAATTACGTGAGAATTG-TTCTCTCTTAGTTCTTGGACGAACT-T
10050501 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
128 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
** *
10050566 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAAC
193 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
*
10050631 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTC
258 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
*
10050696 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCA
323 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
*
10050761 AACTTTTACGATTTCTTTTATAACTTCGGTTCCGGAAAGTATCCAAGATGATCCATTCTTTCGAG
388 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
*
10050826 CAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
453 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
*
10050891 AAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
518 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
* * * *
10050956 GACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGAC
583 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
* *
10051021 GAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAA
648 GAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT-GACGAACATCTGAA
*
10051086 CTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
712 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
*
10051151 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCTATCATTTGGTCTAAATAGTTTGTC
777 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
* *
10051216 ATTTTGTAAACAAA-TTTTGGCCCTTAAATTAAAAACTTATTTACGTGAGAATTGCATCTCCTTT
842 ATTTTGTAAA-AAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTT
*
10051280 GTTGA-G-G-C-TC-CTT-A-AAG-C-A-TT-C-AAG-A-T-GATCCATTCCTTTGAGCAAATTT
906 GTTGACGTGACTTCACTTCACAAGTCGAGTTCCTAAGCATTAGATCCATTCCTTTAAGCAAATTT
10051330 CCAAAC
971 CCAAAC
* *
10051336 ATTCCACGCTAGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
*
10051401 GGACTGTTAATTAATAACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCC
66 GGACTGTTAATTAATAACTTAATTACGTGAGAATTG-TTCTCTCTTAGTTCTTGGACGAACTTCC
10051466 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAA
130 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAA
10051531 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
195 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
*
10051596 GTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTC
260 GTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
* * * *
10051661 AAAAACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
325 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
*
10051726 CTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
390 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
* * * * * *
10051791 ATTGTTCGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
455 ATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAA
*
10051856 AAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGA
520 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGA
* * * * *
10051921 CGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGATGA
585 CGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGA
10051986 ACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACT
650 ACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACATCTGAACT
* * *
10052051 TGTCAAACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCT
714 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCT
*
10052116 TCTAGAAATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
779 TCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
* *
10052181 TTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTT
844 TTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGTT
10052246 G
909 G
10052247 TTGGACGAAC
Statistics
Matches: 1728, Mismatches: 119, Indels: 88
0.89 0.06 0.05
Matches are distributed among these distances:
962 4 0.00
963 872 0.50
964 3 0.00
969 1 0.00
970 1 0.00
971 3 0.00
974 1 0.00
975 2 0.00
977 1 0.00
979 1 0.00
990 3 0.00
991 1 0.00
992 2 0.00
996 5 0.00
997 40 0.02
998 3 0.00
999 41 0.02
1000 526 0.30
1001 2 0.00
1002 4 0.00
1004 1 0.00
1005 1 0.00
1006 4 0.00
1007 1 0.00
1008 1 0.00
1009 2 0.00
1010 5 0.00
1012 1 0.00
1013 194 0.11
1014 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (976 bp):
ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
GGACTGTTAATTAATAACTTAATTACGTGAGAATTGTTCTCTCTTAGTTCTTGGACGAACTTCCA
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAA
CAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAA
CTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGACGAACATCTGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTC
TAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGTTGA
CGTGACTTCACTTCACAAGTCGAGTTCCTAAGCATTAGATCCATTCCTTTAAGCAAATTTCCAAA
C
Found at i:10052335 original size:62 final size:62
Alignment explanation
Indices: 10052209--10052520 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10052199 CCTTTAAATT
* * * * *
10052209 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10052270 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10052332 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10052394 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10052456 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10052518 AAA
1 AAA
10052521 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10053309 original size:62 final size:62
Alignment explanation
Indices: 10053211--10053520 Score: 451
Period size: 62 Copynumber: 5.0 Consensus size: 62
10053201 GTTAATTAAT
* * **
10053211 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10053273 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10053335 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10053397 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10053459 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10053521 CTTTTACGAT
Statistics
Matches: 227, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 226 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10053801 original size:54 final size:54
Alignment explanation
Indices: 10053724--10053836 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10053714 GACGAACTTT
* * *
10053724 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10053778 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10053832 CGAAC
1 CGAAC
10053837 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10053964 original size:332 final size:335
Alignment explanation
Indices: 10053332--10054027 Score: 891
Period size: 332 Copynumber: 2.1 Consensus size: 335
10053322 CAAACTTGTC
* *
10053332 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10053397 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAAAAC
66 AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTT-G--T-ACA-CCGAACTTCTCAAAAAC
* *
10053462 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
126 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
10053527 CGATTTCTTTTATAACTTCGGTTCCGGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTT
191 CGATTTCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTT
***** * * * *
10053592 CGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAGCAAGT
256 CGAACATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
* *
10053657 TTCGGTCCTTGAATT
321 TTCGGCCCTTAAATT
** * * *
10053672 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAA
* ** * * * *
10053736 ACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTT-T-GA-CGAACTTGTCGAAAATTTAT
65 AAACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTAT
*
10053798 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGAT
130 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGAT
* * * *
10053863 TTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGA
195 TTCTTTTATAACTTCGGTTCCGAAAA-GTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
* *
10053927 ACATTCCATGCTCGAAAAATC-CTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
259 ACATCCCATGCTCGAAAAATCGC-ATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
*
10053991 TGGCCCTTAAATT
323 CGGCCCTTAAATT
10054004 AAAAACTTATTTACGTGAGAATTG
1 AAAAACTTATTTACGTGAGAATTG
10054028 CATCTCCTTT
Statistics
Matches: 309, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
331 4 0.01
332 214 0.69
333 1 0.00
334 1 0.00
336 1 0.00
339 1 0.00
340 87 0.28
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (335 bp):
AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAC
ATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTCGG
CCCTTAAATT
Found at i:10054274 original size:62 final size:62
Alignment explanation
Indices: 10054174--10054483 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10054164 GTTAATTAAT
* * * *
10054174 AACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10054236 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10054298 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10054360 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10054422 AACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10054484 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10054759 original size:54 final size:54
Alignment explanation
Indices: 10054687--10054789 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
10054677 GACGAACTTT
* *
10054687 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
* * * *
10054741 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTC
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTC
10054790 TTGAACGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 39 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
Found at i:10054922 original size:332 final size:333
Alignment explanation
Indices: 10054295--10055154 Score: 1023
Period size: 332 Copynumber: 2.5 Consensus size: 333
10054285 CAAACTTGTC
* * *
10054295 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10054360 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG----A-AT--GAACTTGTCAAAAAC
* * * *
10054425 TTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTA
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10054490 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
189 CGATTTCTTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTT
* * ** * *
10054555 CGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAGT
254 CGAAAATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
*
10054620 TTCGGTCC-TTGAATT
319 TTCGG-CCTTTAAATT
* * *
10054635 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10054699 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGG-ATGAACTTGTCGAAAACTTATTT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTT
* * *
10054763 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAACTTTTACGATTT
130 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * * * *
10054828 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
195 CTTTTACAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAA
* * *
10054892 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
259 A-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10054956 GCCTTTAAATT
323 GCCTTTAAATT
* *
10054967 AAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10055030 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT-G--GAA----TGAACTTGTCAAAAA
* * *
10055095 CTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10055155 AACTTAATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
331 68 0.15
332 207 0.47
333 4 0.01
334 3 0.01
335 1 0.00
339 68 0.15
340 88 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAAAT
CCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGCC
TTTAAATT
Found at i:10054957 original size:963 final size:976
Alignment explanation
Indices: 10052134--10055004 Score: 4257
Period size: 963 Copynumber: 2.9 Consensus size: 976
10052124 TTTTTTGAAA
* * *
10052134 ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA--AAA-AAGTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG-ACCAAACAAGTTT
* * * * * *
10052196 TGGCCT-TTAAATTAAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTT
65 TGGACTGTT-AATTAATAACTTAATTACGTGAGAATTGT-TCTCTCTTAGTTCTTGGACGAACTT
* * * *
10052259 TCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTA
128 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
10052324 AACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAAC
193 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
10052389 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
258 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
10052454 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
323 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
* *
10052519 AACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTTGAG
388 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
* *
10052584 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGTATAATTTTGTCTAAATAGTTTGCCTTTTTGT
453 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
* ** * *
10052649 AAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTTGGTTCTTG
518 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
* * *
10052714 GACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGTTCTTGGAC
583 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
* *
10052779 GAACTTGTCAAAAACTTATTTACGT-A-ACTTG--T-T-TCTT-G-----GACGAACAT-TAGAA
648 GAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGACGAACATCT-GAA
10052831 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
712 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
10052896 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
777 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
* *
10052961 ATTTTCTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
842 ATTTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC-T--
*
10053026 TTGTTGGACGAACTTTCGAACTTGTCAAAATTTCACAAGTTCTTTTATAACTGAGGTTCCTTAAA
904 TTGTT-GACG-----T-G-AC-T-TC---ACTTCACAAG--------T--C-GA-GTTCC-T-AA
10053091 GCATTCAAAACGATCCATTCCTTTAAGCAAATTTCCAAAC
942 GCATT----A-GATCCATTCCTTTAAGCAAATTTCCAAAC
*****
10053131 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAAT-GACAAACTATTTTGACCAAACAAGTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTC-ATTTTGACCAAACAAGTTT
* * * **
10053195 TGGATTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGT
65 TGGACTGTTAATTAATAACTTAATTACGTGAGAATTG-TTCTCTCTTAGTTCTTGGACGAACT-T
10053259 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
128 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
** *
10053324 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAAC
193 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
*
10053389 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTC
258 TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTG
*
10053454 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCA
323 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
*
10053519 AACTTTTACGATTTCTTTTATAACTTCGGTTCCGGAAAGTATCCAAGATGATCCATTCTTTCGAG
388 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
*
10053584 CAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
453 CAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
*
10053649 AAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
518 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
* * * *
10053714 GACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGAC
583 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
* *
10053779 GAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAA
648 GAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT-GACGAACATCTGAA
*
10053844 CTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
712 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTC
*
10053909 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCTATCATTTGGTCTAAATAGTTTGTC
777 CTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTC
* *
10053974 ATTTTGTAAACAAA-TTTTGGCCCTTAAATTAAAAACTTATTTACGTGAGAATTGCATCTCCTTT
842 ATTTTGTAAA-AAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTT
*
10054038 GTTGA-G-G-C-TC-CTT-A-AAG-C-A-TT-C-AAG-A-T-GATCCATTCCTTTGAGCAAATTT
906 GTTGACGTGACTTCACTTCACAAGTCGAGTTCCTAAGCATTAGATCCATTCCTTTAAGCAAATTT
10054088 CCAAAC
971 CCAAAC
* *
10054094 ATTCCACGCTAGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
1 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
*
10054159 GGACTGTTAATTAATAACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCC
66 GGACTGTTAATTAATAACTTAATTACGTGAGAATTG-TTCTCTCTTAGTTCTTGGACGAACTTCC
10054224 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAA
130 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAA
10054289 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
195 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
*
10054354 GTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTC
260 GTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
* * * *
10054419 AAAAACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
325 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
*
10054484 CTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
390 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
* * * * * *
10054549 ATTGTTCGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
455 ATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAA
*
10054614 AAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGA
520 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGA
* * * * *
10054679 CGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGATGA
585 CGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGA
10054744 ACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACT
650 ACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACATCTGAACT
* * *
10054809 TGTCAAACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCT
714 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCT
*
10054874 TCTAGAAATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
779 TCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
* *
10054939 TTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTT
844 TTTGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGTT
10055004 G
909 G
10055005 TTGGACGAAC
Statistics
Matches: 1728, Mismatches: 119, Indels: 88
0.89 0.06 0.05
Matches are distributed among these distances:
962 4 0.00
963 872 0.50
964 3 0.00
969 1 0.00
970 1 0.00
971 3 0.00
974 1 0.00
975 2 0.00
977 1 0.00
979 1 0.00
990 3 0.00
991 1 0.00
992 2 0.00
996 5 0.00
997 40 0.02
998 3 0.00
999 41 0.02
1000 526 0.30
1001 2 0.00
1002 4 0.00
1004 1 0.00
1005 1 0.00
1006 4 0.00
1007 1 0.00
1008 1 0.00
1009 2 0.00
1010 5 0.00
1012 1 0.00
1013 194 0.11
1014 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (976 bp):
ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTT
GGACTGTTAATTAATAACTTAATTACGTGAGAATTGTTCTCTCTTAGTTCTTGGACGAACTTCCA
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAA
CAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAA
CTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGACGAACATCTGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTC
TAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGTTGA
CGTGACTTCACTTCACAAGTCGAGTTCCTAAGCATTAGATCCATTCCTTTAAGCAAATTTCCAAA
C
Found at i:10055093 original size:62 final size:62
Alignment explanation
Indices: 10054967--10055278 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10054957 CCTTTAAATT
* * * * *
10054967 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10055028 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10055090 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10055152 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10055214 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10055276 AAA
1 AAA
10055279 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10056193 original size:62 final size:62
Alignment explanation
Indices: 10055969--10056216 Score: 329
Period size: 62 Copynumber: 4.0 Consensus size: 62
10055959 GTTAATTAAT
* ***
10055969 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGT-TTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAC-TAACATCCAAACTTGTCAAA
* * *
10056031 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAACATCCAAACTTGTCAAA
* * * * *
10056093 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAACATCCAAACTTGTCAAA
* * *
10056155 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACT-AACATCCAAACTTGTCAAA
10056217 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
61 1 0.01
62 167 0.99
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAACATCCAAACTTGTCAAA
Found at i:10056497 original size:54 final size:54
Alignment explanation
Indices: 10056420--10056532 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10056410 GACGAACTTT
* * *
10056420 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10056474 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10056528 CGAAC
1 CGAAC
10056533 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10056660 original size:332 final size:335
Alignment explanation
Indices: 10056028--10056723 Score: 891
Period size: 332 Copynumber: 2.1 Consensus size: 335
10056018 CAAACTTGTC
* *
10056028 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10056093 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAAAAC
66 AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTT-G--T-ACA-CCGAACTTCTCAAAAAC
* *
10056158 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
126 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
10056223 CGATTTCTTTTATAACTTCGGTTCCGGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTT
191 CGATTTCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTT
***** * * * *
10056288 CGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAGCAAGT
256 CGAACATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
* *
10056353 TTCGGTCCTTGAATT
321 TTCGGCCCTTAAATT
** * * *
10056368 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAA
* ** * * * *
10056432 ACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTT-T-GA-CGAACTTGTCGAAAATTTAT
65 AAACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTAT
*
10056494 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGAT
130 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGAT
* * * *
10056559 TTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGA
195 TTCTTTTATAACTTCGGTTCCGAAAA-GTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
* *
10056623 ACATTCCATGCTCGAAAAATC-CTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
259 ACATCCCATGCTCGAAAAATCGC-ATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
*
10056687 TGGCCCTTAAATT
323 CGGCCCTTAAATT
10056700 AAAAACTTATTTACGTGAGAATTG
1 AAAAACTTATTTACGTGAGAATTG
10056724 CATCTCCTTT
Statistics
Matches: 309, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
331 4 0.01
332 214 0.69
333 1 0.00
334 1 0.00
336 1 0.00
339 1 0.00
340 87 0.28
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (335 bp):
AAAAACTTATTTACGTGAGAATTGGTTCCCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
AACTTAATTACATGAGAACTATTTCACTCTTGGTTCTTGTACACCGAACTTCTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTATAACTTCGGTTCCGAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAC
ATCCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTTCGG
CCCTTAAATT
Found at i:10056970 original size:62 final size:62
Alignment explanation
Indices: 10056870--10057179 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10056860 GTTAATTAAT
* * * *
10056870 AACTTAATTACGTGAGAATTGCTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10056932 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10056994 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10057056 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10057118 AACTTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10057180 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10057455 original size:54 final size:54
Alignment explanation
Indices: 10057383--10057485 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
10057373 GACGAACTTT
* *
10057383 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
* * * *
10057437 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTC
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTC
10057486 TTGAACGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 39 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCGTGGA
Found at i:10057618 original size:332 final size:333
Alignment explanation
Indices: 10056991--10057850 Score: 1023
Period size: 332 Copynumber: 2.5 Consensus size: 333
10056981 CAAACTTGTC
* * *
10056991 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10057056 AACTTAATTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG----A-AT--GAACTTGTCAAAAAC
* * * *
10057121 TTATTTACCTGAGAAATATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTA
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10057186 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
189 CGATTTCTTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTT
* * ** * *
10057251 CGAACATCCTATGCTTGGGAAGTCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAGT
254 CGAAAATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
*
10057316 TTCGGTCC-TTGAATT
319 TTCGG-CCTTTAAATT
* * *
10057331 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10057395 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCGTGG-ATGAACTTGTCGAAAACTTATTT
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTT
* * *
10057459 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAACTTTTACGATTT
130 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * * * *
10057524 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
195 CTTTTACAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAA
* * *
10057588 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
259 A-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10057652 GCCTTTAAATT
323 GCCTTTAAATT
* *
10057663 AAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10057726 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT-G--GAA----TGAACTTGTCAAAAA
* * *
10057791 CTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10057851 AACTTAATTA
Statistics
Matches: 439, Mismatches: 67, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
331 68 0.15
332 207 0.47
333 4 0.01
334 3 0.01
335 1 0.00
339 68 0.15
340 88 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (333 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAATGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TTTTACAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTGTTCGAAAAT
CCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGCC
TTTAAATT
Found at i:10057789 original size:62 final size:62
Alignment explanation
Indices: 10057663--10057974 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10057653 CCTTTAAATT
* * * * *
10057663 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10057724 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10057786 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10057848 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10057910 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10057972 AAA
1 AAA
10057975 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10058763 original size:62 final size:62
Alignment explanation
Indices: 10058665--10058974 Score: 451
Period size: 62 Copynumber: 5.0 Consensus size: 62
10058655 GTTAATTAAT
* * **
10058665 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10058727 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10058789 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10058851 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10058913 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10058975 CTTTTACGAT
Statistics
Matches: 227, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 226 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10059255 original size:54 final size:54
Alignment explanation
Indices: 10059178--10059290 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10059168 GACGAACTTT
* * *
10059178 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10059232 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10059286 CGAAC
1 CGAAC
10059291 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10059644 original size:215 final size:217
Alignment explanation
Indices: 10059243--10059739 Score: 567
Period size: 215 Copynumber: 2.3 Consensus size: 217
10059233 GAACTTGTCG
* *
10059243 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * ** * **
10059308 TTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * *
10059373 TTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10059437 ACAAATTTTGGCCCT-TAAATTA
196 ACAAATTTTGG-ACTGTAAATTA
* * * *
10059459 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10059523 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCATGACGATCCATTCCTT-TAAGC
66 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
*
10059586 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10059649 ACCAAACAAGTTTTGGACTGTTAATTA
192 A-CAAACAAATTTTGGACTGTAAATTA
* * * * *** *
10059676 ATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTATCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10059740 AACTTATTTA
Statistics
Matches: 233, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
214 3 0.01
215 127 0.55
216 34 0.15
217 43 0.18
218 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAATTTTGGACTGTAAATTA
Found at i:10059791 original size:62 final size:62
Alignment explanation
Indices: 10059685--10059987 Score: 446
Period size: 62 Copynumber: 4.9 Consensus size: 62
10059675 AATAAGTTAG
* **
10059685 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10059747 TTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10059809 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10059871 TTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10059933 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10059988 CTTTTACGAT
Statistics
Matches: 216, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 215 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10060775 original size:62 final size:62
Alignment explanation
Indices: 10060677--10060986 Score: 478
Period size: 62 Copynumber: 5.0 Consensus size: 62
10060667 GTTAATTAAT
* * **
10060677 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10060739 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10060801 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10060863 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10060925 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10060987 CTTTTATGAT
Statistics
Matches: 228, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
62 227 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10061262 original size:54 final size:54
Alignment explanation
Indices: 10061190--10061295 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
10061180 GACGAACTTT
* *
10061190 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10061244 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTG
10061296 AACGAACATC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10061596 original size:62 final size:62
Alignment explanation
Indices: 10061470--10061781 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10061460 CCTTTAAATT
* * * * *
10061470 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10061531 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10061593 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10061655 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10061717 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10061779 AAA
1 AAA
10061782 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10061658 original size:795 final size:790
Alignment explanation
Indices: 10060457--10062316 Score: 2761
Period size: 795 Copynumber: 2.3 Consensus size: 790
10060447 GCCTTTAAAT
* *
10060457 AAAAACTTATTTACGTGAGAATTG-CATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGT-AGAATTGTC-TCT-CTTGGTT-TT-GACGAACATTAGAACTTGTCAAA
* * * * * * ***
10060521 CTTTCACGAGTTGTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAA
61 CTTTTACGATTTCTTTTATAACTTCA-GTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCT-A
** * * *
10060583 GCAAA--TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATTA-TTTGTCATT
123 G-AAATTTTTTGAAA-ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAA-TAGTTTGTCATT
* * * *
10060645 TTG-ACCAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTT
185 TTGTA--AAA-AAGTTTTGGCCT-TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTT
* * * * *
10060708 AGTTCTTGGACG--TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
245 GGTTGTTGGACGAACTT-T-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA
*
10060771 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTT
308 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTT
*
10060836 CGTAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTT
373 CGTAGACGAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10060901 GGACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
438 GGACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
10060966 TGAACATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAA
503 TGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAA
* *
10061031 GATGATCCATTCTTTCGAGCAATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCT
568 GATGATCCATTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCT
* * **
10061096 AAATAGTTTGTCTTTTTGTAAAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATT
633 AAATAGTTTGCCTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATT
* *
10061161 GGTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTT
698 GGTTCCCTCTTGGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTT
*
10061226 TCACTCTTGGTTCTTGGATGAACTTGTC
763 TCACTCTTGGTTCTTGGACGAACTTGTC
*
10061254 GAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGT-AGAATTG--TCTCTCTTGGTT-TTG-ACGAACAT-TAGAACTTGTCAA
* *
10061318 ACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCTTCTAGA
60 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGA
10061383 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
125 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
10061448 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTTGTTGGA
190 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGA
10061513 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
255 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
* * * * * * *
10061578 ACTTCTAAACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACA
320 ACTTCCAAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACA
*
10061643 TCCGAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
385 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
*
10061708 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAA
450 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAA
10061773 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTC
515 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTC
* * *
10061838 TTTTGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGCC
580 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCC
* * *
10061903 TTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTTG
645 TTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTG
* * * *
10061968 GTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGTT
710 GTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTT
10062033 CTTGGACGAACTTGTC
775 CTTGGACGAACTTGTC
*
10062049 AAAAACTTATTTACGTA-ACTTGT-T-TCTT-G----GACGAACATTAGAACTTGTCAAACTTTT
1 AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
*
10062106 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
66 ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * *
10062171 TTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAG
131 TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
10062236 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
196 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
10062301 TTCGAACTTGTCAAAA
261 TTCGAACTTGTCAAAA
10062317 TTTCACAAGT
Statistics
Matches: 975, Mismatches: 72, Indels: 47
0.89 0.07 0.04
Matches are distributed among these distances:
781 1 0.00
782 229 0.23
783 1 0.00
788 1 0.00
789 4 0.00
790 1 0.00
791 1 0.00
793 4 0.00
794 1 0.00
795 523 0.54
796 42 0.04
797 36 0.04
798 116 0.12
799 14 0.01
800 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (790 bp):
AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCC
AAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACATCCAAA
CTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTT
GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
AAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
GCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTTTTTG
TAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTT
GGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
CGAACTTGTC
Found at i:10062570 original size:62 final size:62
Alignment explanation
Indices: 10062472--10062781 Score: 453
Period size: 62 Copynumber: 5.0 Consensus size: 62
10062462 GTTAATTAAT
* * **
10062472 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10062534 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10062596 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10062658 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* *
10062720 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GAATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAG-ACGAACTTCCAAACTTGTCAAA
10062782 CTTTTACGAT
Statistics
Matches: 225, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.00
62 223 0.99
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10063062 original size:54 final size:54
Alignment explanation
Indices: 10062985--10063097 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10062975 GACGAACTTT
* * *
10062985 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10063039 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10063093 CGAAC
1 CGAAC
10063098 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10063451 original size:215 final size:217
Alignment explanation
Indices: 10063050--10063546 Score: 567
Period size: 215 Copynumber: 2.3 Consensus size: 217
10063040 GAACTTGTCG
* *
10063050 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * ** * **
10063115 TTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * *
10063180 TTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10063244 ACAAATTTTGGCCCT-TAAATTA
196 ACAAATTTTGG-ACTGTAAATTA
* * * *
10063266 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10063330 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCATGACGATCCATTCCTT-TAAGC
66 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
*
10063393 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10063456 ACCAAACAAGTTTTGGACTGTTAATTA
192 A-CAAACAAATTTTGGACTGTAAATTA
* * * * *** *
10063483 ATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTATCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10063547 AACTTATTTA
Statistics
Matches: 233, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
214 3 0.01
215 127 0.55
216 34 0.15
217 43 0.18
218 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAATTTTGGACTGTAAATTA
Found at i:10063598 original size:62 final size:62
Alignment explanation
Indices: 10063492--10063794 Score: 446
Period size: 62 Copynumber: 4.9 Consensus size: 62
10063482 AATAAGTTAG
* **
10063492 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10063554 TTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10063616 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10063678 TTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10063740 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10063795 CTTTTACGAT
Statistics
Matches: 216, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 215 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10064237 original size:20 final size:20
Alignment explanation
Indices: 10064212--10064250 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10064202 AAAAATCCCA
10064212 TCATTTGGTTAAA-TAGTTTG
1 TCATTTGG-TAAACTAGTTTG
*
10064232 TCATTTTGTAAACTAGTTT
1 TCATTTGGTAAACTAGTTT
10064251 TGGCCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.51
Consensus pattern (20 bp):
TCATTTGGTAAACTAGTTTG
Found at i:10064557 original size:62 final size:62
Alignment explanation
Indices: 10064483--10064792 Score: 487
Period size: 62 Copynumber: 5.0 Consensus size: 62
10064473 GTTAATTAAT
* * **
10064483 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10064545 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10064607 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10064669 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10064731 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10064793 CTTTTACGAT
Statistics
Matches: 230, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
62 229 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10065068 original size:54 final size:54
Alignment explanation
Indices: 10064996--10065101 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
10064986 GACGAACTTT
* *
10064996 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10065050 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTG
10065102 AACGAACATC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10065401 original size:62 final size:62
Alignment explanation
Indices: 10065275--10065586 Score: 464
Period size: 62 Copynumber: 5.0 Consensus size: 62
10065265 CCTTTAAATT
* * * * *
10065275 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10065336 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10065398 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10065460 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10065522 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10065584 AAA
1 AAA
10065587 CTTTTACGAT
Statistics
Matches: 230, Mismatches: 20, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 202 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10065462 original size:794 final size:788
Alignment explanation
Indices: 10064263--10066120 Score: 2771
Period size: 794 Copynumber: 2.3 Consensus size: 788
10064253 GCCTTTAAAT
* *
10064263 AAAAACTTATTTACGTGAGAATTG-CATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGT-AGAATTGTC-TCT-CTTGGTT-TT-GACGAACATTAGAACTTGTCAAA
* * * * * * ***
10064327 CTTTCACGAGTTGTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAA
61 CTTTTACGATTTCTTTTATAACTTCA-GTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCT-A
** * * * *
10064389 GCAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTT
123 G-AAATTTTTGAAA-ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * *
10064453 G-ACCAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAG
186 GTA--AAA-AAGTTTTGGCCT-TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGG
* * * *
10064516 TTCTTGGACG--TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
246 TTGTTGGACGAACTT-T-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGT
*
10064579 TCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCG
309 TCTTGGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCG
*
10064644 TAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
374 TAGACGAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
10064709 ACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
439 ACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
* *
10064774 AACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGA
504 AACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGA
* *
10064839 TGATCCATTCTTTCGAGCAATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCTAA
569 TGATCCATTCTTT-GAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAA
* * **
10064904 ATAGTTTGTCTTTTTGTAAAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGG
633 ATAGTTTGCCTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGG
* *
10064969 TTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTTC
698 TTCCCTCTTGGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTC
*
10065034 ACTCTTGGTTCTTGGATGAACTTGTC
763 ACTCTTGGTTCTTGGACGAACTTGTC
*
10065060 GAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGT-AGAATTG--TCTCTCTTGGTT-TTG-ACGAACAT-TAGAACTTGTCAA
* *
10065124 ACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCTTCTAGA
60 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGA
10065189 AATTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
125 AATTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
10065254 AAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTTGTTGGAC
190 AAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGAC
10065319 GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
255 GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
* * * * * *
10065384 CTTCTAAACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACAT
320 CTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACAT
* *
10065449 CCGAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCG
385 CCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCA
*
10065514 AACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAAC
450 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAAC
10065579 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCT
515 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCT
* *
10065644 TTGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGCCTT
580 TTGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTT
* * *
10065709 TTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTTGGT
645 TTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGT
* * * *
10065774 TCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGTTCT
710 TCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCT
10065839 TGGACGAACTTGTC
775 TGGACGAACTTGTC
*
10065853 AAAAACTTATTTACGTA-ACTTGT-T-TCTT-G----GACGAACATTAGAACTTGTCAAACTTTT
1 AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
*
10065910 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
66 ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA-TTT
* * *
10065975 TTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAG
130 TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
10066040 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
195 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
10066105 TTCGAACTTGTCAAAA
260 TTCGAACTTGTCAAAA
10066121 TTTCACAAGT
Statistics
Matches: 975, Mismatches: 71, Indels: 46
0.89 0.07 0.04
Matches are distributed among these distances:
779 1 0.00
780 83 0.09
781 146 0.15
786 1 0.00
787 4 0.00
788 1 0.00
789 1 0.00
791 4 0.00
792 1 0.00
793 204 0.21
794 320 0.33
795 42 0.04
796 5 0.01
797 76 0.08
798 78 0.08
799 7 0.01
800 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (788 bp):
AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGT
TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
TCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCA
AACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACATCCAAAC
TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTG
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCA
AACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTGAGC
AATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTTTTTGTA
AAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGG
ACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGACG
AACTTGTC
Found at i:10066374 original size:62 final size:62
Alignment explanation
Indices: 10066276--10066585 Score: 462
Period size: 62 Copynumber: 5.0 Consensus size: 62
10066266 GTTAATTAAT
* * * ***
10066276 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGT-TTGTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-TAACATCCAAACTTGTCAAA
* * *
10066338 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
*
10066400 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
* *
10066462 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
* *
10066524 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCAAACTTGTCAAA
10066586 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
61 1 0.00
62 231 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
Found at i:10066836 original size:62 final size:61
Alignment explanation
Indices: 10066765--10066917 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 61
10066755 AATTGGTTCT
*
10066765 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAACACTTCTTTACATAAGAACTGTTTCA
* * * * * *
10066827 CTCTTGGTTCTTTGACGAACTT-G---TCG--AAA-ACTTTTTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACACTTCTTTACATAAGAACTGTTTCA
*
10066881 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAC
10066918 TTTTATGATT
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
54 39 0.53
55 4 0.05
56 1 0.01
57 2 0.03
59 2 0.03
60 1 0.01
61 5 0.07
62 19 0.26
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACACTTCTTTACATAAGAACTGTTTCA
Found at i:10067391 original size:62 final size:62
Alignment explanation
Indices: 10067293--10067602 Score: 462
Period size: 62 Copynumber: 5.0 Consensus size: 62
10067283 GTTAATTAAT
* * **
10067293 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10067355 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10067417 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10067479 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* *
10067541 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GAATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAG-ACGAACTTCCAAACTTGTCAAA
10067603 CTTTTACGAT
Statistics
Matches: 227, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.00
62 225 0.99
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10068417 original size:62 final size:62
Alignment explanation
Indices: 10068311--10068613 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10068301 AATAAGTTAG
* **
10068311 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10068373 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10068435 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10068497 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10068559 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10068614 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10069399 original size:62 final size:62
Alignment explanation
Indices: 10069301--10069610 Score: 478
Period size: 62 Copynumber: 5.0 Consensus size: 62
10069291 GTTAATTAAT
* * **
10069301 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10069363 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10069425 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10069487 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10069549 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10069611 CTTTTATGAT
Statistics
Matches: 230, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
62 229 1.00
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10069891 original size:54 final size:54
Alignment explanation
Indices: 10069814--10069926 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
10069804 GACGAACTTT
* *
10069814 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10069868 CGAACTTGTCGAAA-ACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10069922 CGAAC
1 CGAAC
10069927 ATCCGAACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 49 0.94
55 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.18, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10070393 original size:62 final size:62
Alignment explanation
Indices: 10070316--10070623 Score: 494
Period size: 62 Copynumber: 5.0 Consensus size: 62
10070306 GTTAATTAAT
*
10070316 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10070378 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10070438 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGATGAACTTCAAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10070500 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10070562 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10070624 CTTTTACGAT
Statistics
Matches: 228, Mismatches: 16, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
60 58 0.25
61 4 0.02
62 166 0.73
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10070918 original size:62 final size:62
Alignment explanation
Indices: 10070776--10071021 Score: 354
Period size: 62 Copynumber: 4.0 Consensus size: 62
10070766 CTCAAACGAT
* *
10070776 AAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG-CA
1 AAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCA
* * * *
10070837 AAAACTTATTTACCTGAGAATTG-TTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC-A
* * *
10070899 AAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCA
* *
10070961 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10071022 GAACTTTCGA
Statistics
Matches: 169, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
60 33 0.20
61 21 0.12
62 83 0.49
63 32 0.19
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCA
Found at i:10070932 original size:123 final size:125
Alignment explanation
Indices: 10070776--10071021 Score: 363
Period size: 123 Copynumber: 2.0 Consensus size: 125
10070766 CTCAAACGAT
* *
10070776 AAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG-CAAAA
1 AAAACTTAATTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
* *
10070840 ACTTATTTACCTGAGAATTG-TTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAA
66 ACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACAAACATCCAAACTTGTCAA
* * *
10070899 AAAACTTAATTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAACTTAATTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10070963 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTC
65 AACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACAAACATCCAAACTTGTC
10071022 GAACTTTCGA
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
123 52 0.48
124 25 0.23
125 32 0.29
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (125 bp):
AAAACTTAATTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
ACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACAAACATCCAAACTTGTCAA
Found at i:10070940 original size:401 final size:401
Alignment explanation
Indices: 10070375--10071364 Score: 1496
Period size: 401 Copynumber: 2.5 Consensus size: 401
10070365 CAAACTTGTC
10070375 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10070438 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGATGAACTTCAAAACTTGTC-AAAAA
65 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAA
10070502 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTT
130 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTT
**
10070567 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACG
195 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAC-TTT-CG
*
10070632 ATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC-TTCGAGCAATT-TTTC
258 ATTTCTTTTACAACTTCGGTT-CTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTTC
* * * * *
10070695 GAACATCCCATGCTCGGGTAGTCGCATAATTTTG-TCTAAATAGTTTGTCTTTTTGTAAACAAGT
322 AAACATCCAATGCTCAGGAAGTCGCATAATTTGGTTCTAAATAGTTTGTCTTTTTGTAAACAAG-
10070759 TTCGGTCCTCAAACGA
386 TTCGGTCCTCAAACGA
*
10070775 TAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG-CAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10070839 AACTTATTTACCTGAGAATTG-TTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAA
65 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAA
10070903 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTT
130 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTT
*
10070968 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCGAACTTTCGAT
195 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTCGAT
*
10071033 TTCTTTTACAACTTCGGTTCTGAAAGTGTCCAAGATGATCCATTCTTTCGAGCAATTGTTTCAAA
260 TTCTTTTACAACTTCGGTTCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTTCAAA
10071098 CATCCAATGCTCAGGAAGTCGCATAATTTGGTTCTAAATAGTTTGTCTTTTTGTAAACAAGTTCG
325 CATCCAATGCTCAGGAAGTCGCATAATTTGGTTCTAAATAGTTTGTCTTTTTGTAAACAAGTTCG
** **
10071163 GTCCTTGAATTA
390 GTCCTCAAACGA
* * * * *
10071175 AAAAACTTATTTACATGGAAATGGTTTCTCTCTAT-GTTCTTGGACGAACTTTCGAACTTGTCAC
1 AAAAACTTATTTACGTGGAATTGG-TTCTCTCT-TGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * * * * * * * * *
10071239 AGACTTATATACATGAGTACTGTTTCACCCTTGGTTCTTGGACGAACTTCCGAACTTTTTAAAAA
64 AAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAA
* *
10071304 TACTT-ATTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
129 -ACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
10071365 CTTTTATGAT
Statistics
Matches: 540, Mismatches: 38, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
398 25 0.05
399 39 0.07
400 150 0.28
401 201 0.37
402 121 0.22
403 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (401 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
ACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTCGATT
TCTTTTACAACTTCGGTTCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTTCAAAC
ATCCAATGCTCAGGAAGTCGCATAATTTGGTTCTAAATAGTTTGTCTTTTTGTAAACAAGTTCGG
TCCTCAAACGA
Found at i:10071276 original size:62 final size:61
Alignment explanation
Indices: 10071210--10071364 Score: 175
Period size: 63 Copynumber: 2.5 Consensus size: 61
10071200 TTCTCTCTAT
* * * *
10071210 GTTCTTGGACGAACTTTCGAACTTGTCACAGACTTATATACATGAGTACTGTTTCACCCTTG
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAGACTTAT-TACATAAGAACTGTTTCACCCTTG
* * * * * * *
10071272 GTTCTTGGACGAACTTCCGAACTTTTTAAAAATACTTATTACGTAAGAATTGTTTCTCTCTTG
1 GTTCTTGGACGAACTTCCGAAC-TTGT-CAAAGACTTATTACATAAGAACTGTTTCACCCTTG
*
10071335 GTTCTTGGACGAACATCCGAACTTGTCAAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAA
10071365 CTTTTATGAT
Statistics
Matches: 77, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
61 3 0.04
62 24 0.31
63 42 0.55
64 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (61 bp):
GTTCTTGGACGAACTTCCGAACTTGTCAAAGACTTATTACATAAGAACTGTTTCACCCTTG
Found at i:10071469 original size:340 final size:336
Alignment explanation
Indices: 10070836--10071495 Score: 782
Period size: 340 Copynumber: 1.9 Consensus size: 336
10070826 CCAAACTTGC
* *
10070836 AAAAACTTATTTACCTGAGAATTGTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACATGAGAATGGTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAA
* * * * * *
10070901 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
66 AACTTAATTACATGAGAACTGTTTCACCCTTGGTTCTTGGACGAACATCCGAACTTGTAAAAAAC
* *
10070966 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCGAACTTTCG
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTCG
** * * * * * *
10071031 ATTTCTTTTACAACTTCGGTTCTGAAAGTGTCCAAGATGATCCATTCTTTCGAGCAATTGTTTCA
196 ATTTCTTTTA-AACTTCGGTTCAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAAATATTTCA
* * * *
10071096 AACATCCAATGCTCAGGAAGTCGCATAATTTGGTTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
260 AACATCCAATGCGCAGGAAATCCCATAATTTGG-TCTAAATAG-TTGTCATTTTGTAAACAAGTT
10071161 CGGTCCTTGAATTA
323 CGGTCCTTGAATTA
* * *
10071175 AAAAACTTATTTACATG-GAAATGGTT-TCTCTCTATGTTCTTGGACGAACTTTCGAACTTGTC-
1 AAAAACTTATTTACATGAG-AATGGTTCTCTCT-TA-GTTCTTAGACGAACTTCCAAACTTGTCA
* * * * *
10071237 ACAGACTT-ATATACATGAGTACTGTTTCACCCTTGGTTCTTGGACGAACTTCCGAACTTTTTAA
63 AAAAACTTAAT-TACATGAGAACTGTTTCACCCTTGGTTCTTGGACGAACATCCGAAC-TTGTAA
*
10071301 AAATACTTA-TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
126 AAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
* * * *
10071365 CTTTTATGATTTC-TTT-AACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTA-AAA
190 C-TTT-CGATTTCTTTTAAACTTCGGTT-CAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAA
* *
10071427 ATATTTCGAACATGCC-ATGCGC-GGAAAATCCCATTCATTTGGTCTAAATAGTTGTCATTTTGT
252 ATATTTCAAACAT-CCAATGCGCAGG-AAATCCCA-TAATTTGGTCTAAATAGTTGTCATTTTGT
10071490 AAACAA
314 AAACAA
10071496 ATTTTGGCCT
Statistics
Matches: 272, Mismatches: 37, Indels: 25
0.81 0.11 0.07
Matches are distributed among these distances:
338 27 0.10
339 111 0.41
340 117 0.43
341 11 0.04
342 6 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (336 bp):
AAAAACTTATTTACATGAGAATGGTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAA
AACTTAATTACATGAGAACTGTTTCACCCTTGGTTCTTGGACGAACATCCGAACTTGTAAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTCG
ATTTCTTTTAAACTTCGGTTCAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAAATATTTCAA
ACATCCAATGCGCAGGAAATCCCATAATTTGGTCTAAATAGTTGTCATTTTGTAAACAAGTTCGG
TCCTTGAATTA
Found at i:10071909 original size:60 final size:62
Alignment explanation
Indices: 10071742--10072049 Score: 419
Period size: 60 Copynumber: 5.0 Consensus size: 62
10071732 GTTAATTAAT
* * * * *
10071742 ACTTAGTTACGTGAGAAATTGTTTCTCTCCTTAGTTATTGGACGAAACGTCCAAACTAGTCAAAA
1 ACTTATTTACGTGAG-AATTGTTTCTCT-CTTGGTTCTTGGACG-AACATCCAAACTTGTCAAAA
*
10071807 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
* * * *
10071869 ACTTA-TTA-GTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCACACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
* * *
10071929 ACTTAATTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACTAA-ATCGAAA-TTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
*
10071988 ACTTATTTACGTGAGAATTGTTTCTCTTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10072050 CTTTTTCGAT
Statistics
Matches: 219, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
59 31 0.14
60 60 0.27
61 40 0.18
62 41 0.19
63 21 0.10
64 12 0.05
65 14 0.06
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
Found at i:10071939 original size:122 final size:120
Alignment explanation
Indices: 10071742--10072049 Score: 413
Period size: 122 Copynumber: 2.5 Consensus size: 120
10071732 GTTAATTAAT
* * *
10071742 ACTTAGTTACGTGAGAAATTGTTTCTCTCCTTAGTTATTGGACGAAACGTCCAAACTAGTCAAAA
1 ACTTAGTTACGTGAG-AATTGTTTCTCT-CTTAGTTCTTGGACG-AACATCC-AACTTGTCAAAA
* *
10071807 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
62 ACTTAATTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAA-ATCCAAA-TTGTCAAAA
* *
10071869 ACTTA-TTA-GTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCACACTTGTCAAAAACT
1 ACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCA-ACTTGTCAAAAACT
* *
10071932 TAATTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACTAAATCGAAATTGTCAAAA
65 TAATTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAAATCCAAATTGTCAAAA
* *
10071988 ACTTATTTACGTGAGAATTGTTTCTCTTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 ACTTAGTTACGTGAGAATTGTTTCTC-TCTTAGTTCTTGGACGAACATCC-AACTTGTCAAA
10072050 CTTTTTCGAT
Statistics
Matches: 165, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
119 14 0.08
120 8 0.05
121 36 0.22
122 68 0.41
123 14 0.08
124 12 0.07
125 5 0.03
126 3 0.02
127 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (120 bp):
ACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAACTTGTCAAAAACTT
AATTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAAATCCAAATTGTCAAAA
Found at i:10072335 original size:51 final size:51
Alignment explanation
Indices: 10072254--10072356 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 51
10072244 GACGAACTTT
* *
10072254 CGAACTTGTCAAACACTATTTACATGAGAA-TGTTTCACTCTGGTTCTTGGA
1 CGAACTTGTCAAAAACTATTTACATAAGAATTGTTTCACT-TGGTTCTTGGA
* *
10072305 CGAACTTGTCAAAAACT-TATTACGTAAGAATTGTTTCTCTTGGTTCTTGGA
1 CGAACTTGTCAAAAACTAT-TTACATAAGAATTGTTTCACTTGGTTCTTGGA
10072356 C
1 C
10072357 AACATCCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
50 1 0.02
51 37 0.80
52 8 0.17
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37
Consensus pattern (51 bp):
CGAACTTGTCAAAAACTATTTACATAAGAATTGTTTCACTTGGTTCTTGGA
Found at i:10072990 original size:61 final size:61
Alignment explanation
Indices: 10072877--10073122 Score: 336
Period size: 61 Copynumber: 4.0 Consensus size: 61
10072867 ATCGTAAAAG
*
10072877 TTTGACAAGTTTCGGATGTTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTTGACAAG-TTCGGAAG-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG--T
* * * *
10072942 TTTGACAAGTTCAGATGTT-GTCCAAGAACCTA-AGAGAAACAATTCTCACGTGAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
*
10073001 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
10073062 TTTAACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAG-AACAATTCTCACGTAACTAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10073122 T
1 T
10073123 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
59 17 0.10
60 34 0.20
61 86 0.51
62 12 0.07
63 2 0.01
64 7 0.04
65 9 0.05
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10073472 original size:213 final size:213
Alignment explanation
Indices: 10073066--10073549 Score: 552
Period size: 213 Copynumber: 2.3 Consensus size: 213
10073056 ATAAGTTTTA
* * * * *
10073066 ACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAACAATTCTCACGTAACTAAGTTATTAATTA
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTATTAATTA
* * * *
10073131 ACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAATGATGTGATTTCTCAAGCA
66 ACAGGCCAAAACTTGTTT-GACAAAATGACAAACTATTTGGACCAATGATGGGATTTCTCAAGCA
** * * *
10073196 TGGAATGTTTGGAAATTTGCTCAAAGGAATTTATCGTCTTGTTGCTTTAAGGAACCTAAGTTATA
130 TGGAATGTTTGGAAATTTGCTCAAAGGAATGAATC-TCTTGATACTTTAAGGAACCGAAGTTATA
* **
10073261 AAAGAACTCGTGAAAGTTTG
194 AAAGAAATCGAAAAAGTTTG
* * *
10073281 ACTAGTTCGAAAGTTCGTCCAACAACCAAG-GAGATACAATTCTCACGTAAAT-AGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTATTAA-T
*
10073344 TAA-AGGCCAAAACTTGTTT-ACAAAATGACAAACTATTTGGACCAAATGATGGGATTT-TCCGA
64 TAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTGGACC-AATGATGGGATTTCT-CAA
* ** *
10073406 GCATGGAATGTTT-GAAATATTTCT-AGAAGGAATGAAT-TACTTGAATACTTTTTGGTACCGAA
127 GCATGGAATGTTTGGAAAT-TTGCTCA-AAGGAATGAATCT-CTTG-ATACTTTAAGGAACCGAA
*
10073468 GTTATAAAGGAAATCGAAAAAGTTTG
188 GTTATAAAAGAAATCGAAAAAGTTTG
* * *
10073494 ACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAG
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAG
10073550 GTTTTGACAA
Statistics
Matches: 227, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
211 1 0.00
212 33 0.15
213 100 0.44
214 46 0.20
215 47 0.21
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (213 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTATTAATTA
ACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTGGACCAATGATGGGATTTCTCAAGCAT
GGAATGTTTGGAAATTTGCTCAAAGGAATGAATCTCTTGATACTTTAAGGAACCGAAGTTATAAA
AGAAATCGAAAAAGTTTG
Found at i:10073617 original size:61 final size:61
Alignment explanation
Indices: 10073490--10073737 Score: 311
Period size: 62 Copynumber: 4.0 Consensus size: 61
10073480 ATCGAAAAAG
* * *
10073490 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGGT
1 TTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
* * *
10073552 TTTGACAAGTTCAGATGTTAGTCCAAGAACC-AGAGAGAAACAATTCTCAAGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* *
10073613 TTTGACAAGTTTGGAAGTTCA-TCCAAGAAGCAAGAGAGAAACAATTCTCACGTAGATAAGTTT
1 TTTGACAAGTTCGGAAGTT-AGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA-ATAAG-TT
* * * * *
10073676 TTTGACAAGTTTGAAAGTTCGTCCAAGAGCCAAGAGTGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10073738 ATTAATTAAC
Statistics
Matches: 165, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
61 51 0.31
62 60 0.36
63 54 0.33
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10073994 original size:617 final size:615
Alignment explanation
Indices: 10072661--10074295 Score: 2684
Period size: 617 Copynumber: 2.7 Consensus size: 615
10072651 NNNNNNNNNA
* * *
10072661 GAAAGTTTGACAAGTTCGAAAGTTCATCCAACAACCAAGGAGATAC-GTTCTCACGT-AATAAGT
1 GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGT
10072724 TTTTAATTT-AAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
66 TTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
* * *
10072788 TCCGA-CATGGAATGATCGAAAAATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGTATC
131 TCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGTACC
* *
10072852 AAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTCGGATGTTTCGTCCAAGAACCAAGAGAG
196 GAAGTTATAAAAGAAATCGAAAAAGTTTGACAAG-TTCGGATG-TTCGTCCAAGAACCAAGAGAG
10072917 AAACAATTCTCACGTAAATAAGTTTTTTGACAAGTTCAGATGTTGTCCAAGAACCTA-AGAGAAA
259 AAACAATTCTCACGTAAATAAG-TTTTTGACAAGTTCAGATGTTGTCCAAGAACC-AGAGAGAAA
*
10072981 CAATTCTCACGTGAATAAG-TTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
322 CAATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAA
* *
10073045 TTCTCACGTAAATAAG--TTTTAACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAACAATTC
387 TTCTCACGTAAATAAGTTTTTTAACAAGTTTGAAAGTTCGTCCAAGAGCCAAGAGAGAACAATTC
10073108 TCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGA
452 TCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGA
* **
10073173 CCAATGATGTGATTTCTCAAGCATGGAATGTTTGGAAATTTGCTCAAAGGAATTTATCGTCTTGT
517 CCAATGATGTGATTTCTCAAGCATGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGT
*
10073238 TGCTTTAAGGAACCTAAGTTATAAAAGAACTCGT
582 TGCTTGAAGGAACCTAAGTTATAAAAGAACTCGT
10073272 GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAAT-AGT
1 GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGT
*
10073336 TTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTGGACCAAATGATGGGATTT
66 TTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
* *
10073401 TCCGAGCATGGAATGTTTGAAATATTTCTAGAAGGAATGAATT-ACTTGAATACTTTTTGGTACC
131 TCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGTACC
*
10073465 GAAGTTATAAAGGAAATCGAAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
196 GAAGTTATAAAAGAAATCGAAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
* *
10073530 ACAATTCTCACGTAAGTAAGGTTTTGACAAGTTCAGATGTTAGTCCAAGAACCAGAGAGAAACAA
261 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAGATGTT-GTCCAAGAACCAGAGAGAAACAA
* *
10073595 TTCTCAAGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAAGCAAGAGAGAAACAATTC
325 TTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * *
10073660 TCACGTAGATAAGTTTTTTGACAAGTTTGAAAGTTCGTCCAAGAGCCAAGAGTGAAACAATTCTC
390 TCACGTAAATAAGTTTTTTAACAAGTTTGAAAGTTCGTCCAAGAGCCAAGAGAG-AACAATTCTC
10073725 ACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACC
454 ACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACC
10073790 AAATGATGTGATTTCTCAAGCATGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGTA
519 -AATGATGTGATTTCTCAAGCATGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGT-
10073855 TGCTTGAAGGAACCTAAGTTATAAAAGAACTCGT
582 TGCTTGAAGGAACCTAAGTTATAAAAGAACTCGT
* *
10073889 GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAGCAAAGGAGATACAATTCTCACGTAAATAAGT
1 GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGT
* * *
10073954 TTTTAATTTAAAGGCCTAAACCTG-TTACAAAATGACAAACTATTTAGACCAAATGATGAGATTT
66 TTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
*
10074018 TCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACC
131 TCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGTACC
*
10074083 GAAGTTATAAAAGAAATC-ATAAATGTTTGACAAGTTCGGATGTTCGTCCAAGAACCCAAGAGAG
196 GAAGTTATAAAAGAAATCGA-AAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA-CCAAGAGAG
* * * ** *
10074147 AAACAATTCTTACGTAAATAAGTTTTTGATAGGTTTGGATGTTCGTCCAAGAACAAGAGAGAAAC
259 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAGATGTT-GTCCAAGAACCAGAGAGAAAC
* * * *
10074212 AATTCTCACGTGAATAA-TTTTTCACAAGGTTCGAAGTTCATCCAAGAACCAAGAGAGAACCAAT
323 AATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAAT
*
10074276 TCTTACGTAAATAAGTTTTT
388 TCTCACGTAAATAAGTTTTT
10074296 AATTCAAGGA
Statistics
Matches: 954, Mismatches: 54, Indels: 25
0.92 0.05 0.02
Matches are distributed among these distances:
610 21 0.02
611 122 0.13
612 87 0.09
613 113 0.12
614 68 0.07
615 75 0.08
616 60 0.06
617 172 0.18
618 155 0.16
619 81 0.08
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (615 bp):
GAAAGTTTGACTAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGT
TTTTAATTTAAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
TCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGTACC
GAAGTTATAAAAGAAATCGAAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
ACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAGATGTTGTCCAAGAACCAGAGAGAAACAAT
TCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTTAACAAGTTTGAAAGTTCGTCCAAGAGCCAAGAGAGAACAATTCTCAC
GTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAA
TGATGTGATTTCTCAAGCATGAAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGTTGCT
TGAAGGAACCTAAGTTATAAAAGAACTCGT
Found at i:10074242 original size:61 final size:63
Alignment explanation
Indices: 10074112--10074295 Score: 243
Period size: 61 Copynumber: 3.0 Consensus size: 63
10074102 TAAATGTTTG
* *
10074112 ACAA-GTTCGGATGTTCGTCCAAGAACCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTG
1 ACAAGGTTTGGATGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTC
* * *
10074175 A-TAGGTTTGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTGAATAA-TTTTTC
1 ACAAGGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTC
* * * *
10074235 ACAAGG-TTCGAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATAAGTTTTT
1 ACAAGGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
10074296 AATTCAAGGA
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
60 22 0.21
61 56 0.53
62 6 0.06
63 21 0.20
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28
Consensus pattern (63 bp):
ACAAGGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTC
Found at i:10074543 original size:62 final size:62
Alignment explanation
Indices: 10074446--10074693 Score: 417
Period size: 62 Copynumber: 4.0 Consensus size: 62
10074436 ATCGTAAAAG
* *
10074446 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA-TTGAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
*
10074508 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10074570 TTTGATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10074632 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10074694 ATTAACTAAA
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
62 175 0.99
63 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10074545 original size:338 final size:339
Alignment explanation
Indices: 10073902--10074634 Score: 1032
Period size: 338 Copynumber: 2.2 Consensus size: 339
10073892 AGTTTGACTA
* * * * *
10073902 GTTCGAAAGTTCGTCCAACAGCAAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAAA
1 GTTCG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAA
* *
10073966 GGCCTAAACCTGTTACAAAATGACAAACTATTTAGACCAAATGATGAGATTTTCCGAGCATGGAA
65 GGCCTAAACCTGTTACAAAAAGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGCATGGAA
* * * * * *
10074031 TGTTCGAAATATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTATAAAAG
130 TGTTCGAAATATTACTAGAAAGAATGGATCAACTTGAATACTCTCTGGAACCGAAGATATAAAAG
* *
10074096 AAATCATAAATGTTTGACAAGTTCGGATGTTCGTCCAAGAACCCAAGAGAGAAACAATTCTTACG
195 AAATCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCCAAGAGAGAAACAATTCTTACG
* * * *
10074161 TAAATAAGTTTTTGATAGGTTTGGATGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTGAA
260 TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAA
10074226 TAA-TTTTTCACAAG
325 TAAGTTTTTCACAAG
* * *
10074240 GTTCGAAGTTCATCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATAAGTTTTTAA-TTCAAG
1 GTTCGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG
* * *
10074304 GACC-AATACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGG
66 G-CCTAA-ACCTG-TTACAAAAAGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGCATGG
* *
10074368 AATGATT-GAAA-ATTACTAGAAAGAATGGATCATCTTGAATACTCTCTGGAATCGAAGATATAA
128 AATG-TTCGAAATATTACTAGAAAGAATGGATCAACTTGAATACTCTCTGGAACCGAAGATATAA
* *
10074431 AAGAAATCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTT
192 AAGAAATCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCCAAGAGAGAAACAATTCTT
*
10074495 A-TTGAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
257 ACGT-AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCAC
* *
10074559 GTAAATAAGTTTTTGATAAG
320 GTAAATAAGTTTTTCACAAG
* * *
10074579 TTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 GTTCGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10074635 GACAAGTTCG
Statistics
Matches: 350, Mismatches: 37, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
336 1 0.00
337 81 0.23
338 151 0.43
339 115 0.33
340 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (339 bp):
GTTCGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG
GCCTAAACCTGTTACAAAAAGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGCATGGAAT
GTTCGAAATATTACTAGAAAGAATGGATCAACTTGAATACTCTCTGGAACCGAAGATATAAAAGA
AATCATAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCCAAGAGAGAAACAATTCTTACGT
AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTCACAAG
Found at i:10074900 original size:79 final size:79
Alignment explanation
Indices: 10074744--10074893 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 79
10074734 TATTTTGAAA
* * *
10074744 AAATGATGTGATTTCTCGAGCATGGAATGTTTGTAAATTTGCTTAAAGGAATGGATCTTCTTGAA
1 AAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAATTTGCTTAAAGGAATGGATCTTCTTGAA
10074809 TACTTTAAGGAACC
66 TACTTTAAGGAACC
*
10074823 AAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTT-C-TAGAAGGAATGGAT-TATCTT
1 AAATGATGGGATTTCTCGAGCATGGAATGTTCG-AAAATTTGCTTA-AAGGAATGGATCT-TCTT
10074885 GAATACTTT
63 GAATACTTT
10074894 TTGGAACTGA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
78 3 0.05
79 55 0.86
80 6 0.09
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (79 bp):
AAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAATTTGCTTAAAGGAATGGATCTTCTTGAA
TACTTTAAGGAACC
Found at i:10075031 original size:62 final size:61
Alignment explanation
Indices: 10074927--10075115 Score: 263
Period size: 62 Copynumber: 3.0 Consensus size: 61
10074917 ATCATAAAAG
* * * *
10074927 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAAAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10074989 TTTGACAAGTTCGTAAGTTCATCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10075051 TTTCACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAG-AACGAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCATCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTT
10075113 TTT
1 TTT
10075116 AATTCAAGGA
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
61 4 0.04
62 109 0.96
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10075413 original size:62 final size:62
Alignment explanation
Indices: 10075266--10075515 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
10075256 ATCGTAAAAG
* * *
10075266 TTTGACAAGTTTGGATGTTCGTCCAATAACCAAGAGAGAAACAATTCTTACGTAAA-AAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10075327 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10075389 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGTGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*** * * * *
10075451 TTTGACAAGTTCAAAAGTTCGTCCAAGAACCGAGACAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10075513 TTT
1 TTT
10075516 AATTCAAGGA
Statistics
Matches: 170, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
61 51 0.30
62 119 0.70
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10075446 original size:819 final size:819
Alignment explanation
Indices: 10074001--10075640 Score: 2614
Period size: 819 Copynumber: 2.0 Consensus size: 819
10073991 AACTATTTAG
*
10074001 ACCAAATGATGAGATTTTCCGAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTAACTT
1 ACCAAATGATGAGATTTTCCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTAACTT
* *
10074066 GAATACTTTTTGGAACCGAAGTTATAAAAGAAATCATAAATGTTTGACAAGTTCGGATGTTCGTC
66 GAATACTTTTTGGAACCGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCAGATGTTCGTC
* * * * * *
10074131 CAAGAACCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGATAGGTTTGGATGTTCGTCCA
131 CAAGAACCCAAGAGAAAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
* *
10074196 AGAACAAGAGAGAAACAATTCTCACGTGAATAATTTTTCACAAGGTTCGAAGTTCATCCAAGAAC
196 AGAACAAGAGAGAAACAATACTCACGTAAATAATTTTTCACAAGGTTCGAAGTTCATCCAAGAAC
* *
10074261 CAAGAGAGAACCAATTCTTACGTAAATAAGTTTTTAATTCAAGGACCAATACTTGTTTACAAAAA
261 CAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAA
*
10074326 GACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGATTGAAAATTACTAGAAAG
326 GACAAACTATTTAGACCAAATTATACGATTTCCCGAGCATGGAATGATTGAAAATTACTAGAAAG
10074391 AATGGATCATCTTGAATACTCTCTGGAATCGAAGATATAAAAGAAATCGTAAAAGTTTGACAAGT
391 AATGGATCATCTTGAATACTCTCTGGAATCGAAGATATAAAAGAAATCGTAAAAGTTTGACAAGT
*
10074456 TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTATTGAAATAAGTTTTTGACAAGTTTG
456 TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAGTGAAATAAGTTTTTGACAAGTTTG
*
10074521 GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTTGGAA
521 GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
*
10074586 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTT
586 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTT
* * * *
10074651 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAAAAGTCCAAAACTT
651 CGTCCAAGAACCAAGACAGAAACAATTCTCACATAAATAAGTTATTAACTAAAAGACCAAAACTT
* ** * * *
10074716 GTTTACAAAATGACAAACTATTT-TGAAAAAATGATGTGATTTCTCGAGCATGGAATGTTTGTAA
716 GTTTACAAAAAGACAAACTATTTAT-AAAAAATGATACGATTTCCCGAGCATGGAATGTTCGAAA
* * *
10074780 ATTTGCT-TAAAGGAATGGATCTTCTTGAATACTTTAAGGA
780 AATTGCTCGAAA-GAATGGATCGTCTTGAATACTTTAAGGA
* * *
10074820 ACCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTT
1 ACCAAATGATGAGATTTTCCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTAACTT
*
10074885 GAATACTTTTTGGAACTGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCAGATGTTCGTC
66 GAATACTTTTTGGAACCGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCAGATGTTCGTC
*
10074950 CAAGAA-CCAAGAGAAAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCATCCA
131 CAAGAACCCAAGAGAAAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
*
10075014 AGAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAA-GTTCGAAAGTTCATCCAAG
196 AGAAC-AAGAGAGAAACAATACTCACGTAAATAA-TTTTTCACAAGGTTCG-AAGTTCATCCAAG
*
10075078 AACCAAGAGAGAACGAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAA
258 AACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAA
*
10075143 AAAGACAAACTATTTAGACC-AATTATACGATTTCCTGAGCATGGAATG-TTCGAAAAATTACTA
323 AAAGACAAACTATTTAGACCAAATTATACGATTTCCCGAGCATGGAATGATT-G-AAAATTACTA
* *
10075206 GAAAGAATGGATCATCTTGAATACTTTCTGGAA-CAGAAGTTATAAAAGAAATCGTAAAAGTTTG
386 GAAAGAATGGATCATCTTGAATACTCTCTGGAATC-GAAGATATAAAAGAAATCGTAAAAGTTTG
* *
10075270 ACAAGTTTGGATGTTCGTCCAATAACCAAGAGAGAAACAATTCTTACGT-AAA-AAGTTTTTGAC
450 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA-GTGAAATAAGTTTTTGAC
* * *
10075333 AAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAG
514 AAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
* *
10075398 TTTGGAAGTTCGTCCAAGAACCAAGTGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTC
579 TTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTC
* * * * * *
10075463 AAAAGTTCGTCCAAGAACCGAGACAGAACCAATTCTCACATAAATAAGTTTTTAATTCAAGGACC
644 AAAAGTTCGTCCAAGAACCAAGACAGAAACAATTCTCACATAAATAAGTTATTAACTAAAAGACC
** * *
10075528 AAAACTTGTTTACAAAAAGACAAACTATTTATACCAAATTATACGATTTCCCGAGCATGGAGTGT
709 AAAACTTGTTTACAAAAAGACAAACTATTTATAAAAAATGATACGATTTCCCGAGCATGGAATGT
*
10075593 TCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTCAGGA
774 TCGAAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGA
10075639 AC
1 AC
10075641 AGAAGTTATA
Statistics
Matches: 754, Mismatches: 58, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
818 58 0.08
819 469 0.62
820 226 0.30
821 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (819 bp):
ACCAAATGATGAGATTTTCCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTAACTT
GAATACTTTTTGGAACCGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCAGATGTTCGTC
CAAGAACCCAAGAGAAAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
AGAACAAGAGAGAAACAATACTCACGTAAATAATTTTTCACAAGGTTCGAAGTTCATCCAAGAAC
CAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAA
GACAAACTATTTAGACCAAATTATACGATTTCCCGAGCATGGAATGATTGAAAATTACTAGAAAG
AATGGATCATCTTGAATACTCTCTGGAATCGAAGATATAAAAGAAATCGTAAAAGTTTGACAAGT
TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAGTGAAATAAGTTTTTGACAAGTTTG
GAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTT
CGTCCAAGAACCAAGACAGAAACAATTCTCACATAAATAAGTTATTAACTAAAAGACCAAAACTT
GTTTACAAAAAGACAAACTATTTATAAAAAATGATACGATTTCCCGAGCATGGAATGTTCGAAAA
ATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGA
Found at i:10075738 original size:62 final size:62
Alignment explanation
Indices: 10075667--10075793 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
10075657 ATAGTAAAAG
* * *
10075667 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATATTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10075729 TTTGACAAGTTCGGATATTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATTAGTT
1 TTTGACAAGTTCGGATATTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10075791 TTT
1 TTT
10075794 AATTTAAAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGGATATTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10076031 original size:62 final size:62
Alignment explanation
Indices: 10075934--10076122 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
10075924 CTCGCAAAAG
10075934 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10075996 TTTGACATGTTTGGAAGTTCGTACAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10076058 TTTCACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
10076120 TTT
1 TTT
10076123 AATTTAAGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10076404 original size:61 final size:62
Alignment explanation
Indices: 10076297--10076522 Score: 265
Period size: 62 Copynumber: 3.7 Consensus size: 62
10076287 ATGTTCGTCC
* *
10076297 AAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGAACATCA
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACATCA
* ** * *
10076359 AAGAACAAAGAGAGAAA-AATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCC
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACATCA
* *** ** * *
10076420 AAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCTTCC
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACATCA
** * * *
10076482 AAGAACTGAGGGAGAACCAATTCTCACATAAATAAGTTTTT
1 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10076523 AATTCAAAGA
Statistics
Matches: 144, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
61 54 0.38
62 90 0.62
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (62 bp):
AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACATCA
Found at i:10076437 original size:400 final size:401
Alignment explanation
Indices: 10075934--10076799 Score: 1321
Period size: 400 Copynumber: 2.2 Consensus size: 401
10075924 CTCGCAAAAG
* * * *
10075934 TTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGATA-TACATCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
10075998 TGACATGTTTGGAAGTTCGTACAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCA
65 TGACAAGTTTGGAAGTTCGTACAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCA
* *
10076063 CAAGTTCGAAAGTT-TGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
130 CAAGTTCAAAAGTTCT-TCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
* *
10076127 TAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTAAGCGATTTCCCGAGCA
194 CAAAGACCAAAACTTGTTTA-AAAAAGACAAACTATTTAGACCAAATTAAGCGATTTCCCGAGCA
*
10076192 TGGAATGTTCGAAAAATTGGTAGAAAGAATGGATCATCTTGAATACTTTCTA-GAA-CGAAGTTA
258 TGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTC-AGGAACCGAAGTTA
*
10076255 TAAAAGAAATAGTAAAAGTTTGACAAATTGGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
322 TAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
10076320 TTACGTAAATAAGTT
387 TTACGTAAATAAGTT
* *
10076335 TTTGACAAGTTTGGATGA-ACATCAAAGAACAAAGAGAGAAA-AATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAT-ATACATCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10076398 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGA
65 TGACAAGTTTGGAAGTTCGTACAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCA
** *
10076463 CAAGTTCAAAAGTTCTTCCAAGAACTGAGGGAGAACCAATTCTCACATAAATAAGTTTTTAATTC
130 CAAGTTCAAAAGTTCTTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATTC
* * * *
10076528 AAAGACCAAAACTTGTTTAAAAAAGACAAACTATTTATACCAACTTATGCGATTTCCTGAGCATG
195 AAAGACCAAAACTTGTTTAAAAAAGACAAACTATTTAGACCAAATTAAGCGATTTCCCGAGCATG
* * *
10076593 GAGTGTTCGAAAAATTGCTTGAAAGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTATAA
260 GAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAA
* *
10076658 AAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTA
325 AAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA
*
10076723 TGTAAATAAGTT
390 CGTAAATAAGTT
* * * *
10076735 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATATACATCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10076800 AATTTAAAGA
Statistics
Matches: 420, Mismatches: 38, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
398 1 0.00
399 90 0.21
400 273 0.65
401 55 0.13
403 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (401 bp):
TTTGACAAGTTCGGATATACATCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTACAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCAC
AAGTTCAAAAGTTCTTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTAAAAAAGACAAACTATTTAGACCAAATTAAGCGATTTCCCGAGCATGG
AATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAA
AGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
GTAAATAAGTT
Found at i:10076497 original size:123 final size:124
Alignment explanation
Indices: 10076273--10076522 Score: 331
Period size: 123 Copynumber: 2.0 Consensus size: 124
10076263 ATAGTAAAAG
* *
10076273 TTTGACAAATTGGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAATTGGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*** * *
10076338 GACAAGTTTGGATGAACATCAAAGAACAAAGAGAGAA-AAATTCTCACGTAAATAAGTT
66 GACAAGTTCAAAAGAACATCAAAGAACAAAGAGAGAACAAATTCTCACATAAATAAGTT
* * *
10076396 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAATTGGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** * * ** * *
10076461 GACAAGTTCAAAAGTTCTTCCAAGAACTGAGGGAGAACCAATTCTCACATAAATAAGTT
66 GACAAGTTCAAAAGAACATCAAAGAACAAAGAGAGAACAAATTCTCACATAAATAAGTT
10076520 TTT
1 TTT
10076523 AATTCAAAGA
Statistics
Matches: 108, Mismatches: 18, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
123 86 0.80
124 22 0.20
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (124 bp):
TTTGACAAATTGGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGAACATCAAAGAACAAAGAGAGAACAAATTCTCACATAAATAAGTT
Found at i:10076744 original size:62 final size:62
Alignment explanation
Indices: 10076673--10076799 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
10076663 ATAGTAAAAG
* * *
10076673 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
10076735 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
10076797 TTT
1 TTT
10076800 AATTTAAAGA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
Found at i:10076986 original size:278 final size:278
Alignment explanation
Indices: 10076396--10077352 Score: 1357
Period size: 277 Copynumber: 3.5 Consensus size: 278
10076386 TAAATAAGTT
* * * *
10076396 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
** * ** * * *
10076461 GACAAGTTCAAAAGTTCTTCCAAGAACTGAGGGAGAACCAATTCTCACATAAATAAGTTTTTAAT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * *
10076526 TCAAAGACCAAAACTTGTTTA-AAAAAGACAAACTATTTATACCAACTTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAGC
* * **
10076590 ATGGAGTGTTCGAAAAATTGCTTGAAAGAATGGATCGTCTTGAATACTTTCAGGAACCGAAGTTA
196 ATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTA
*
10076655 TAAAAGAAATAGTAAAAG
261 TAAAAGAAATCGTAAAAG
* *
10076673 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
*
10076738 GACAAGTTCGGATA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAA
66 GACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
* * * * * * * * **
10076802 TTTAAAGACCAAAACTTGTTTACAAAATGAGAAACAATTTAGACCAAATGATGGGATTTTCAAAG
130 TTCAAAGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAG
* * * **
10076867 CATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGTT
195 CATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTT
10076932 ATAAAAGAAATCGTAAAAG
260 ATAAAAGAAATCGTAAAAG
* * * *
10076951 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * * * *
10077016 GACAAGTTTGGAAGTTCGTCTAAG-ACCAGGAAAGAAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* *
10077080 TCAAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAGA
131 TCAAAGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAGC
* * *
10077145 ATGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAAAGTTA
196 ATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTA
*
10077210 -GAAA-AAATCGTAAAAG
261 TAAAAGAAATCGTAAAAG
* *
10077226 TTTGACAAGTTCGGATGTTCGTCCAGGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* *
10077291 GACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10077353 GACAAGTTCA
Statistics
Matches: 596, Mismatches: 80, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
275 92 0.15
276 36 0.06
277 282 0.47
278 186 0.31
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (278 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
TCAAAGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAGC
ATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTA
TAAAAGAAATCGTAAAAG
Found at i:10077073 original size:61 final size:62
Alignment explanation
Indices: 10076951--10077076 Score: 155
Period size: 61 Copynumber: 2.0 Consensus size: 62
10076941 ATCGTAAAAG
* * * * * *
10076951 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTT
1 TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAAAGAAACAACTCTCACGTAAAGAAGTT
* * * *
10077013 TTTGACAAGTTTGGAAGTTCGTCTAAG-ACCAGGAAAGAAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAAAGAAACAACTCTCACGTAAAGAAGTT
10077074 TTT
1 TTT
10077077 AATTCAAGGA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
61 30 0.56
62 24 0.44
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAAAGAAACAACTCTCACGTAAAGAAGTT
Found at i:10077323 original size:62 final size:61
Alignment explanation
Indices: 10077226--10077413 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 61
10077216 ATCGTAAAAG
* * *
10077226 TTTGACAAGTTCGGATGTTCGTCCAGGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
* *
10077288 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
* * *
10077350 TTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAACCAATT-TTACTTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
10077411 TTT
1 TTT
10077414 AATTCAAGGA
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
61 16 0.14
62 97 0.85
63 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
Found at i:10077360 original size:337 final size:338
Alignment explanation
Indices: 10076951--10077744 Score: 1119
Period size: 337 Copynumber: 2.3 Consensus size: 338
10076941 ATCGTAAAAG
* * * * * *
10076951 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTT
1 TTTGACAAGTT-CGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10077016 GACAAGTTTGGAAGTTCGTCTAAG-ACCAGGAAAGAAACAACTCTCACGTAAATAAGTTTTTAAT
65 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TCTCACGTAAATAAGTTTTTAAT
*
10077080 TCAAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACC-AAATTATGCGATTTCCTGAG
129 TCAAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTT-AACCTAAATTATGCGATTTCCCGAG
* * *
10077144 AATGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAAAGTT
193 AATGGAATGTTAGAAAAATCACTAGAAAGAATGAATCATCTTGAATACTTTCAGGAACCAAAGTT
* * *
10077209 A-GAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGGAGCCAAGAGAGAAACAATT
258 ATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
*
10077272 CTTACGTAAATAAGTT
323 CTTACATAAATAAGTT
*
10077288 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * * *
10077353 GACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAACCAATTTTACTTAAATAAGTTTTTAATT
65 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCTCACGTAAATAAGTTTTTAATT
* ** * * *
10077418 CAAGGACCAAAACTTGTTTACCAAAAGACGAACTATTTAGCCTAATTTATGCGATTTCCCGAGCA
130 CAAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAACCTAAATTATGCGATTTCCCGAGAA
* * * * *
10077483 TGGAATGTTCGAAAAATTACTAGAAAGATTGAATCATCTTGAATACTTTCTGGAACCGAAGTTAT
195 TGGAATGTTAGAAAAATCACTAGAAAGAATGAATCATCTTGAATACTTTCAGGAACCAAAGTTAT
* *
10077548 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAATAACCAAGAGGGAAACAATTCT
260 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10077613 TACATAAATAAGTT
325 TACATAAATAAGTT
* * *
10077627 TCTGTCAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10077692 GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
65 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TCTCACGTAAA
10077745 CAGGTTTGGA
Statistics
Matches: 400, Mismatches: 50, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
336 4 0.01
337 208 0.52
338 17 0.04
339 163 0.41
340 8 0.02
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.27
Consensus pattern (338 bp):
TTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCTCACGTAAATAAGTTTTTAATTC
AAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAACCTAAATTATGCGATTTCCCGAGAAT
GGAATGTTAGAAAAATCACTAGAAAGAATGAATCATCTTGAATACTTTCAGGAACCAAAGTTATA
AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
ACATAAATAAGTT
Found at i:10077672 original size:62 final size:62
Alignment explanation
Indices: 10077565--10077859 Score: 351
Period size: 62 Copynumber: 4.9 Consensus size: 62
10077555 ATCGTAAAAG
* * * * *
10077565 TTTGACAAGTTCGGATGTTCGTCCAATAACCAAGAGGGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10077627 TCTGTCAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10077689 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-CAG-G
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10077749 TTT-----G---G-ATGTTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10077802 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATA
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
10077860 GGCTTTTAAT
Statistics
Matches: 196, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
51 38 0.19
52 3 0.02
53 3 0.02
55 1 0.01
58 1 0.01
60 3 0.02
61 3 0.02
62 144 0.73
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10077774 original size:113 final size:113
Alignment explanation
Indices: 10077641--10077857 Score: 371
Period size: 113 Copynumber: 1.9 Consensus size: 113
10077631 TCAAGTTCGA
* * *
10077641 ATGTTCGTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAG
1 ATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCGAAAG
10077706 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAGGTTTGG
66 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAGGTTTGG
*
10077754 ATGTTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCGAAAG
1 ATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCGAAAG
* * *
10077819 TTCGTCCAAGAACCAAGAGAGAACCAATTCTTACGTAAA
66 TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
10077858 TAGGCTTTTA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (113 bp):
ATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCGAAAG
TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAGGTTTGG
Found at i:10078165 original size:62 final size:62
Alignment explanation
Indices: 10078018--10078266 Score: 381
Period size: 62 Copynumber: 4.0 Consensus size: 62
10078008 ATCGTAAAAG
* * * * *
10078018 TTTGACAAGTTTGGATGTTCGTCCAAGAACCGAGAGAGAAACAATTCTTATTGAAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-CGTAAATAAGTT
* * *
10078081 TTTTACAAGTTTGGAAGTTCGTCCTAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10078143 TTTGATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10078205 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10078267 ATTAACTAAA
Statistics
Matches: 170, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
62 126 0.74
63 44 0.26
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10078448 original size:79 final size:79
Alignment explanation
Indices: 10078317--10078467 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 79
10078307 CTATTTTGAA
* * *
10078317 CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGAATCT-TCTTG
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAATTTGCTTAAAGGAATGAAT-TATCTTG
10078381 AATACTTTAAGGAGC
65 AATACTTTAAGGAGC
* *
10078396 CAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTT-C-TAGAAGGAATGGATTATCTT
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCG-AAAATTTGCTTA-AAGGAATGAATTATCTT
10078459 GAATACTTT
64 GAATACTTT
10078468 TTGGAACTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.05
79 55 0.86
80 6 0.09
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.34
Consensus pattern (79 bp):
CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAATTTGCTTAAAGGAATGAATTATCTTGA
ATACTTTAAGGAGC
Found at i:10078600 original size:62 final size:62
Alignment explanation
Indices: 10078501--10078689 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
10078491 ATCGTAAAAG
* * *
10078501 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * * * *
10078563 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAACTAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* *
10078625 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
10078687 TTT
1 TTT
10078690 AATTCAAGGA
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:10078947 original size:60 final size:62
Alignment explanation
Indices: 10078862--10079089 Score: 275
Period size: 62 Copynumber: 3.7 Consensus size: 62
10078852 GGGATGTTCG
* *
10078862 TCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGAACA
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACA
** *
10078924 TCCAAGAA-CAA-AGAGAAACAATTCTCACGTAAATAAGTTTTTGA-ATAGTTTGGAAGTTCG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACA-AGTTTGGAAGAACA
* *** ****
10078984 TCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTTG
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACA
* *
10079046 TCCAAGAACCGAGAGAG-AACTAATTCTCACATAAATAAGTTTTT
1 TCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTT
10079090 AATTCAAGGA
Statistics
Matches: 148, Mismatches: 13, Indels: 10
0.87 0.08 0.06
Matches are distributed among these distances:
59 1 0.01
60 50 0.34
61 9 0.06
62 87 0.59
63 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (62 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGAACA
Found at i:10079061 original size:122 final size:124
Alignment explanation
Indices: 10078857--10079089 Score: 335
Period size: 122 Copynumber: 1.9 Consensus size: 124
10078847 AAATTGGGAT
* *** *
10078857 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGAA
*
10078922 CATCCAAGAACAAAGAGA-AAC-AATTCTCACGTAAATAAGTTTTTGAATAGTTTGGAA
66 CATCCAAGAACAAAGAGAGAACTAATTCTCACATAAATAAGTTTTTGAATAGTTTGGAA
* **
10078979 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGAA
** **
10079044 TGTCCAAGAACCGAGAGAGAACTAATTCTCACATAAATAAGTTTTT
66 CATCCAAGAACAAAGAGAGAACTAATTCTCACATAAATAAGTTTTT
10079090 AATTCAAGGA
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
122 71 0.74
123 3 0.03
124 22 0.23
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (124 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGAA
CATCCAAGAACAAAGAGAGAACTAATTCTCACATAAATAAGTTTTTGAATAGTTTGGAA
Found at i:10079276 original size:400 final size:402
Alignment explanation
Indices: 10076951--10079367 Score: 1889
Period size: 400 Copynumber: 6.0 Consensus size: 402
10076941 ATCGTAAAAG
* * ** * * *
10076951 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* *** * * * * * *
10077016 GACAAGTTTGGAAGTTCGTCTAAG-ACCAGGAAAGAAACAACTCTCACGTAAATAAGTTTTTAAT
66 CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
* * * * * * *
10077080 TCAAGGACCAAAACTTGTTTACAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTCCTGAGA
131 TCAAGGACCAAAACTTGTTCAAAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGC
* ** *
10077145 ATGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCA-AAGTT
196 ATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAA-CAGAAGTT
* * * * *
10077209 A-GAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGGAGCCAAGAGAGAAACAATT
260 ATAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * *
10077272 CTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
325 CTTACGTAAATAAGTTTTTGACAAGTTCGGATGATCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
10077337 AAGTAAATAAGTT
390 ACGTAAATAAGTT
* * * * * *
10077350 TTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAACCAAT-TTTACTTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* ** * ** * * * * * *
10077414 AATTCAAGGACCAAAACTT-GT----TTACCAAAAGACGAA-CTATT-T-AGCCTAATTTA--TG
66 CA--CAA-GTTCAAAAGTTCGTCCAAGAACCAAGAGA-GAACCAATTCTCA-CATAAATAAGTTT
** * ** * * * ** ** ** *
10077469 CGATTTC-CCGAGCATGGAA--TGTTCGAAAAATTACTAGAAAGA-TT-GA-ATCATCT-TG-AA
126 TTAATTCAAGGACCA--AAACTTGTTCAAAAAAAGAC-A-AACTATTTAGACAAAAT-TATGCGA
* * * ** ** * * * ** * *
10077526 TACTTTCTG-GAACCGAA-GTTATAAAAGA-AATCGTA-AAAG-TTTGA-CAAGTTCGGAT-GTT
186 T--TTCCCGAGCATGGAATGTTCGAAAA-ATTA-C-TAGAAAGAATGGATCATCTT-GAATACTT
** ** **** * * * *
10077584 CGTCCAATAACCA-AGAGGGA-AACAATTCTTACATAAATAAGTTTCTGTCAAGTTCGAATGTTC
245 --T-CAGGAA-CAGA-AGTTATAA-AAGAAATA-GT-AA-AAG-TT-TGACAAATTCGGATGTTC
* * * * * *
10077647 GTCCAAGAACCAAGAGAGAAGCAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCATC
299 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGATCGTC
10077712 CAAGAACCAAGAGAGAAACAATTCTCACG----TAA---
364 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10077744 ----ACAGGTTTGGATGTTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* * * * *
10077805 CACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTTACGTAAATAGGCTTTTAAT
66 CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
* * * * *
10077870 TCAAGGACCAATACTTGTTTACAAAAAGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGC
131 TCAAGGACCAAAACTTGTTCAAAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGC
* *
10077935 ATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTCTCTGGAATC-GAAGTT
196 ATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAA-CAGAAGTT
* * * *
10077999 ATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCGAGAGAGAAACAATT
260 ATAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * * * * * * *
10078064 CTTATTGAAAATAAGTTTTTTACAAGTTTGGAAGTTCGTCCTAGAACAAAGAGAGAAACAATTCT
325 CTTA-CGTAAATAAGTTTTTGACAAGTTCGGATGATCGTCCAAGAACCAAGAGAGAAACAATTCT
10078129 CACGTAAATAAGTT
389 CACGTAAATAAGTT
* * *
10078143 TTTGATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* * * * * * *
10078208 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAC
66 CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
* * * * * * * * * *
10078273 TAAAAGTCCAAAAACTTGTTTACAAAATGACAAACTATTTTGA-ACAAATGATGTGATTTCTCGA
131 TCAAGGACC-AAAACTTGTTCAAAAAAAGACAAACTATTTAGACA-AAATTATGCGATTTCCCGA
* * * * * * * * *
10078337 GCATGGAATGTTTGGAAATTTGCTTA-AAGGAATGAATCTTCTTGAATACTTTAAGGAGCCAAAT
194 GCATGGAATGTTCGAAAAATTAC-TAGAAAGAATGGATCATCTTGAATACTTTCAGGA---ACA-
* * * * * * * * *
10078401 GATGGGATTTTTCGAGCATGGAAT-GTTCGAAAAATTTCTAGAAGGAAT-GGAT-TATCTTGAAT
254 GA----AGTTAT--A-AAAGAAATAG-T--AAAAGTTT-GACAA--ATTCGGATGT-TC--G--T
*** * * * * *
10078463 ACTTTTTGGAACTGAACTTAGA-AAAGAA---AT-CGT-AA-AAG--TTTGACAAGTTCGGATGT
301 -C---CAAGAAC-CAA--GAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGA
* *
10078519 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
359 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10078563 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAACTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
*
10078628 CACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
66 CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
*
10078693 TCAAGGACCAAAACTTGTTCACAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGC
131 TCAAGGACCAAAACTTGTTCAAAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGC
* * *
10078758 ATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTA
196 ATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACAGAAGTTA
* *
10078823 TAAAAGAAATCGTAAAAGTTTGACAAATTGGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
261 TAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
10078888 TTACGTAAATAAGTTTTTGACAAGTTTGGATGAACATCCAAGAA-CAA-AGAGAAACAATTCTCA
326 TTACGTAAATAAGTTTTTGACAAGTTCGGATGATCGTCCAAGAACCAAGAGAGAAACAATTCTCA
10078951 CGTAAATAAGTT
391 CGTAAATAAGTT
* * *
10078963 TTTGA-ATAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 TTTGACA-AGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTT
* * * *
10079027 TGACAAGTTCAAAAGTTTGTCCAAGAACCGAGAGAGAACTAATTCTCACATAAATAAGTTTTTAA
65 TCACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAA
* * * * *
10079092 TTCAAGGACCAAAACTTGTTTAAAAAAAGACAAACTATTTATACCAAATTATGCGATTTTCTGAG
130 TTCAAGGACCAAAACTTGTTCAAAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAG
* * * *
10079157 CATGGAGTGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
195 CATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACAGAAGTT
* * * *
10079222 ATAAAAGAAATAGTAAAAGTTTGACAAGTTCTGATGTTCGTCCAAGAGCCAAGAGAGAAATAATT
260 ATAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
*
10079287 CTTACGTAAATAAGTTTTTGACAAGTTCGGAT-ATTTGTCCAAGAACCAAGAGAGAAACAATTCT
325 CTTACGTAAATAAGTTTTTGACAAGTTCGGATGA-TCGTCCAAGAACCAAGAGAGAAACAATTCT
10079351 CACGTAAATAAGTT
389 CACGTAAATAAGTT
10079365 TTT
1 TTT
10079368 AATTTAAAGA
Statistics
Matches: 1586, Mismatches: 313, Indels: 235
0.74 0.15 0.11
Matches are distributed among these distances:
388 7 0.00
389 5 0.00
390 38 0.02
391 75 0.05
392 78 0.05
393 48 0.03
394 25 0.02
395 16 0.01
396 29 0.02
397 43 0.03
398 41 0.03
399 64 0.04
400 372 0.23
401 114 0.07
402 57 0.04
403 121 0.08
404 96 0.06
405 6 0.00
406 7 0.00
407 1 0.00
408 8 0.01
409 2 0.00
411 4 0.00
412 4 0.00
414 2 0.00
415 8 0.01
416 2 0.00
417 7 0.00
418 6 0.00
419 97 0.06
420 180 0.11
421 1 0.00
422 3 0.00
423 3 0.00
424 2 0.00
426 1 0.00
427 4 0.00
428 1 0.00
429 5 0.00
430 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (402 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
TCAAGGACCAAAACTTGTTCAAAAAAAGACAAACTATTTAGACAAAATTATGCGATTTCCCGAGC
ATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACAGAAGTTA
TAAAAGAAATAGTAAAAGTTTGACAAATTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
TTACGTAAATAAGTTTTTGACAAGTTCGGATGATCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTT
Found at i:10079327 original size:62 final size:62
Alignment explanation
Indices: 10079241--10079367 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10079231 ATAGTAAAAG
* * * * *
10079241 TTTGACAAGTTCTGATGTTCGTCCAAGAGCCAAGAGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10079303 TTTGACAAGTTCGGATATTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10079365 TTT
1 TTT
10079368 AATTTAAAGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (62 bp):
TTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10079478 original size:278 final size:277
Alignment explanation
Indices: 10078970--10079920 Score: 1349
Period size: 278 Copynumber: 3.4 Consensus size: 277
10078960 GTTTTTGAAT
* * * *
10078970 AGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGT
1 AGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGT
** * * * * *
10079035 TCAAAAGTTTGTCCAAGAACCGAGAGAG-AACTAATTCTCACATAAATAAGTTTTTAATTCAAGG
66 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTTAATTTAAAG
* * * *
10079099 ACCAAAACTTGTTTAAAAAAAGACAAACTATTTATACCAAATTATGCGATTTTCTGAGCATGGAG
130 ACCAAAACTTGTTT-AAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTTCCGAGCATGGAA
* *
10079164 TGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
194 TGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
*
10079229 AAATAGTAAAAGTTTGACA
259 AAATCGTAAAAGTTTGACA
* * *
10079248 AGTTCTGATGTTCGTCCAAGAGCCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTGACAAGT
1 AGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGT
*
10079313 TCGGATA-TTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG
66 TCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG
* * * * * * *
10079377 ACCAAAACTTGTTTACAAAATGAGAAACAATTTAGACCAAATGATGGGATTTTCCAAGCATGGAA
130 ACCAAAACTTGTTTA-AAAAAGAAAAACTATTTAAACCAAATTATGCGATTTTCCGAGCATGGAA
* * * **
10079442 TGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGTTATAAAAG
194 TGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
10079507 AAATCGTAAAAGTTTGACA
259 AAATCGTAAAAGTTTGACA
* * * *
10079526 AGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTTGACAAGT
1 AGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGT
* * * * *
10079591 TTGGAAGTTCGTCTAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTTTTTAA-TTCAAGA
66 TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAG-
*
10079655 ACCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACAAAATTATGCGA-TTTCCTGAGCATGGAA
130 ACCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTTCC-GAGCATGGAA
* * *
10079719 TGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAAAGTTA-AAAA-
194 TGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
10079782 AAATCGTAAAAGTTTGACA
259 AAATCGTAAAAGTTTGACA
10079801 AGTTCGGATGTTCGTCC-AGAAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAG
1 AGTTCGGATGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAG
* *
10079865 TTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTT
65 TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10079921 GACAAGTTCA
Statistics
Matches: 597, Mismatches: 69, Indels: 17
0.87 0.10 0.02
Matches are distributed among these distances:
274 4 0.01
275 124 0.21
276 9 0.02
277 93 0.16
278 363 0.61
279 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (277 bp):
AGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGT
TCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGA
CCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACCAAATTATGCGATTTTCCGAGCATGGAATG
TTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAA
ATCGTAAAAGTTTGACA
Found at i:10079634 original size:62 final size:62
Alignment explanation
Indices: 10079519--10079645 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 62
10079509 ATCGTAAAAG
* * * * *
10079519 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTT
1 TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAGAAGTT
* * * *
10079581 TTTGACAAGTTTGGAAGTTCGTCTAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAGAAGTT
10079643 TTT
1 TTT
10079646 AATTCAAGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTAGGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAAGAAGTT
Found at i:10079891 original size:62 final size:61
Alignment explanation
Indices: 10079794--10079981 Score: 272
Period size: 62 Copynumber: 3.0 Consensus size: 61
10079784 ATCGTAAAAG
* *
10079794 TTTGACAAGTTCGGATGTTCGTCC-AGAAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10079856 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10079918 TTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAACCAATT-TCACGTAAATAACTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10079979 TTT
1 TTT
10079982 AATTCAAGGA
Statistics
Matches: 116, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
61 17 0.15
62 94 0.81
63 5 0.04
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10080231 original size:62 final size:62
Alignment explanation
Indices: 10080133--10080495 Score: 385
Period size: 62 Copynumber: 6.0 Consensus size: 62
10080123 ATCGTAAAAG
* * *
10080133 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10080195 TTTGTCAAGTTTGAATGTTTGTCCAATAA-CACAGAGAGAATCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10080257 TTTGACAAGTTTGAAAT-TTCG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCG-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10080318 TTTGACAAGTTCGAAAGTTCATGCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-CAG-G
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10080378 TTT-----G---G-ATATTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10080431 TTTCACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCATTTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10080493 TTT
1 TTT
10080496 AATTCAAGGA
Statistics
Matches: 247, Mismatches: 38, Indels: 32
0.78 0.12 0.10
Matches are distributed among these distances:
51 35 0.14
52 3 0.01
53 3 0.01
55 1 0.00
58 1 0.00
60 5 0.02
61 53 0.21
62 143 0.58
63 3 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10080264 original size:339 final size:335
Alignment explanation
Indices: 10079519--10080320 Score: 1153
Period size: 337 Copynumber: 2.4 Consensus size: 335
10079509 ATCGTAAAAG
* * * * *
10079519 TTTGACAAGTTAGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTT
1 TTTGACAAGTTAGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10079584 GACAAGTTTGGAAGTTCGTCTAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAG-TTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TTTCACGTAAATAAGTTTTTAAT
*
10079649 TCAAGAACCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACAAAATTATGCGATTTCCTGAGCA
129 TCAAGAACCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACAAAATTATGCGATTTCCCGAGCA
* *
10079714 TGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAAAGTTAA
194 TGGAATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTAA
10079779 AAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAGCCAAGAGAGAAACAATTCTTA
259 AAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAGCCAAGAGAGAAACAATTCTTA
*
10079844 CGTAAATAAGTT
324 CATAAATAAGTT
* *
10079856 TTTGACAAGTTCGTAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTT
1 TTTGACAAGTTAG-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
10079920 TGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAACCAATTTCACGTAAATAACTTTTTAAT
65 TGACAAGTT-AGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTCACGTAAATAAGTTTTTAAT
* * * * * *
10079985 TCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACTAAATTATGTGATTTCCCGAGC
129 TCAAGAACCAAAACTTGTTTA-AAAAAGAAAAACTATTTAAACAAAATTATGCGATTTCCCGAGC
* * * *
10080050 ATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTA
193 ATGGAATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTA
10080115 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA-CCAAGAGAGAAACAATT
258 -AAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCC-AGAAGCCAAGAGAGAAACAATT
10080179 CTTACATAAATAAGTT
320 CTTACATAAATAAGTT
* * * * *
10080195 TTTGTCAAGTTTGAATGTTTGTCCAATAA-CACAGAGAGAATCAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTAGAATGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * *
10080259 TGACAAGTTTGAAATTTCG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
65 TGACAAGTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TCACGTAAATAAGTTTTT
10080321 GACAAGTTCG
Statistics
Matches: 415, Mismatches: 40, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
336 43 0.10
337 185 0.45
338 32 0.08
339 151 0.36
340 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (335 bp):
TTTGACAAGTTAGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTCACGTAAATAAGTTTTTAATTC
AAGAACCAAAACTTGTTTAAAAAAGAAAAACTATTTAAACAAAATTATGCGATTTCCCGAGCATG
GAATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTAAAA
AAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAGCCAAGAGAGAAACAATTCTTACA
TAAATAAGTT
Found at i:10080301 original size:123 final size:124
Alignment explanation
Indices: 10080133--10080495 Score: 376
Period size: 113 Copynumber: 3.0 Consensus size: 124
10080123 ATCGTAAAAG
* *
10080133 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * ** * *
10080198 GTCAAGTTTGAATGTTTGTCCAATAA-CACAGAGAGAATCAATTCTCACGTAAATAAGTT
66 GACAAGTTCGAAAGTTCATCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTT
* **
10080257 TTTGACAAGTTTGAAAT-TTCG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 TTTGACAAGTTCG-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
* * * *
10080320 TGACAAGTTCGAAAGTTCATGCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-CAG-G
65 TGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10080378 TTT-----G---G-ATATTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * * *
10080434 CACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCATTTCTTACGTAAATAAGTT
66 GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10080493 TTT
1 TTT
10080496 AATTCAAGGA
Statistics
Matches: 204, Mismatches: 29, Indels: 21
0.80 0.11 0.08
Matches are distributed among these distances:
111 2 0.01
112 4 0.02
113 86 0.42
114 2 0.01
115 3 0.01
116 1 0.00
121 3 0.01
122 2 0.01
123 81 0.40
124 18 0.09
125 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (124 bp):
TTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10080714 original size:62 final size:62
Alignment explanation
Indices: 10080647--10080894 Score: 399
Period size: 62 Copynumber: 4.0 Consensus size: 62
10080637 ATCGTAAAAG
* * *
10080647 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA-TTGAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* *
10080709 TTTGACAAGTTTGCAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10080771 TTTGATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10080833 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10080895 ATTAACTAAA
Statistics
Matches: 173, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
62 172 0.99
63 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10081011 original size:402 final size:401
Alignment explanation
Indices: 10080257--10081933 Score: 1410
Period size: 402 Copynumber: 4.2 Consensus size: 401
10080247 TAAATAAGTT
* *
10080257 TTTGACAAGTTTGAAAT-TTCG-CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 TTTGACAAGTTTG-GATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * * *
10080320 TGACAAGTTCGAAAGTTCATGCAAGAACCAAGAGAGAAACAATTCTCACG----T--G-----AA
65 TGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
* * *
10080374 CAGGTTTGGATA-TTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACA
130 CAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACA
* * * * * *
10080438 AGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAACCATTTCTTACGTAAATAAGTTTTTAATTCAA
194 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAA
* * * * *
10080503 GGACCAATACTTGTTTACAAAGAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGG
259 AGACCAAAACTTGTTTACAAA-AGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGG
* *
10080568 AATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATA-TTCTCTGGAATCGGAGTTATAA
323 AATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTT-TCTGGAATCGAAGTTATAA
10080632 AAGAAATCGTAAAAG
387 AAGAAATCGTAAAAG
* *
10080647 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA-TTGAAATAAGTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTTTT
* *
10080711 TGACAAGTTTGCAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
65 TGACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
* *
10080776 TAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
130 CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAA
* *
10080841 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGTTATTAACTAAAA
195 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAAA
* * * *
10080906 GTCCAAAACTTGTTCACAAAATGACAAACTATTTTGAACAAATGATGTGATTTCTCGAGCATGGA
260 GACCAAAACTTGTTTACAAAA-GACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGA
* * * * * * ** * *
10080971 ATGTTTGGAAATTTTCTTA-AAGGAATGGATCTTCTTGAATACTATAAGAAACCAAATGATGGGA
324 ATGTTTGAAAAATTAC-TAGAAAGAATGGATCATCTTGAATACTTTCTGGAATC----GA----A
* * ** * * *
10081035 TTTTTCGAGCATGGAATGTTCGAAAAAT
380 GTTAT--A--AAAGAA--ATCGTAAAAG
* ** ** * ***** * * *
10081063 TTCTAGA-AGGAATGGAT-TATC-TTGAA-TACTTTTTG-G-AACTGAAGTTATAAAAG-AAAT-
1 TT-T-GACAAGTTTGGATGT-TCGTCCAAGAACCAAGAGAGAAAC--AA-TTCT-CACGTAAATA
* * * **** * ** * *** * *
10081120 AG----T-AAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA-AACAAT-TCTTA
59 AGTTTTTGACAAGTTCG-GAAGTTC----G-TCCAAGAACAA-AGAGAGAAACAATTCTCACGTA
** * * *** **** * * * * *
10081178 CGTAAATAAGTTTTTGACAAGTTCGTAAGTTCATCCAAGAACTAGGAGAGAAACAATACTCACGT
117 AATAAGT--TTTTGACAAGTTTG-G-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * *
10081243 AAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAA
178 AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
10081308 TAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAAAGACAAACTATTTAGACCAAATTATGT
243 TAAGTTATTAATTAAAAGACCAAAACTTGTTTAC-AAAAGACAAACTATTTAGACCAAATGATGT
*
10081373 GATTT-TCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCT
307 GATTTCT-CGAGCATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCT
**
10081437 GGAA-CAGAAGTTATAAAAGAAATTATAAAAG
371 GGAATC-GAAGTTATAAAAGAAATCGTAAAAG
* *
10081468 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10081533 GACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* *
10081598 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAG
131 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAG
* * * *
10081663 TTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAG
196 TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAAAG
* * ** * * * *
10081728 TCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTAGAGGATTGAA
261 ACCAAAACTTGTTTACAAAA-GACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAA
* * ** ** * ** * *
10081793 TGTTTGGAAATTTGTTTA-AGGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTTATAAAA
325 TGTTTGAAAAATT-ACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAATCGAAGTTATAAAA
*
10081857 GAAATCGTGAAAG
389 GAAATCGTAAAAG
* * * * *
10081870 TTTGACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10081934 AATTTAAAGA
Statistics
Matches: 997, Mismatches: 217, Indels: 135
0.74 0.16 0.10
Matches are distributed among these distances:
389 2 0.00
390 18 0.02
391 83 0.08
395 1 0.00
397 1 0.00
401 34 0.03
402 450 0.45
403 10 0.01
404 22 0.02
405 27 0.03
406 16 0.02
407 5 0.01
408 3 0.00
409 1 0.00
410 17 0.02
411 20 0.02
412 1 0.00
413 3 0.00
414 5 0.01
415 17 0.02
416 29 0.03
417 22 0.02
418 7 0.01
419 199 0.20
420 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (401 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAG
TTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAAAAG
ACCAAAACTTGTTTACAAAAGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAAT
GTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAATCGAAGTTATAAAAGA
AATCGTAAAAG
Done.