Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 41 of 144
Found at i:10081075 original size:79 final size:79
Alignment explanation
Indices: 10080944--10081092 Score: 221
Period size: 79 Copynumber: 1.9 Consensus size: 79
10080934 CTATTTTGAA
* * * *
10080944 CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTTCTTAAAGGAATGGATCT-TCTTG
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTAAAGGAATGGAT-TATCTTG
10081008 AATACTATAAGAAAC
65 AATACTATAAGAAAC
*
10081023 CAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTC-TAGAAGGAATGGATTATCTTG
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTA-AAGGAATGGATTATCTTG
10081087 AATACT
65 AATACT
10081093 TTTTGGAACT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
78 3 0.05
79 60 0.95
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (79 bp):
CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTAAAGGAATGGATTATCTTGA
ATACTATAAGAAAC
Found at i:10081227 original size:62 final size:62
Alignment explanation
Indices: 10081128--10081313 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 62
10081118 ATAGTAAAAG
* * *
10081128 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10081190 TTTGACAAGTTCGTAAGTTCATCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10081252 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10081314 ATTAATTCAA
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10081565 original size:62 final size:62
Alignment explanation
Indices: 10081468--10081715 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10081458 ATTATAAAAG
* *
10081468 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10081530 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10081592 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10081654 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10081716 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10081641 original size:340 final size:340
Alignment explanation
Indices: 10081021--10081653 Score: 1034
Period size: 340 Copynumber: 1.9 Consensus size: 340
10081011 ACTATAAGAA
* * * *
10081021 ACCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTT
1 ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
* *
10081086 GAATACTTTTTGGAACTGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTC
66 GAATACTTTCTGGAACAGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTC
*
10081151 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCATCCAA
131 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAA
* *
10081216 GAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAA
196 GAACAAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAA
*
10081281 CCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAA
261 CCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAA
10081346 AGACAAACTATTTAG
326 AGACAAACTATTTAG
* * * *
10081361 ACCAAATTATGTGATTTTCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTT
1 ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
10081426 GAATACTTTCTGGAACAGAAGTTATAAAAGAAATTA-TAAAAGTTTGACAAGTTCGGATGTTCGT
66 GAATACTTTCTGGAACAGAAGTTATAAAAGAAA-TAGTAAAAGTTTGACAAGTTCGGATGTTCGT
* * **
10081490 CCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCA
130 CCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
* * *
10081555 AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGA
195 AGAACAAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGA
* **
10081620 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
260 ACCAACAGAGAAACAATTCTCACATAAATAAGTT
10081654 TTTGACAAGT
Statistics
Matches: 268, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
340 266 0.99
341 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (340 bp):
ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
GAATACTTTCTGGAACAGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTC
CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAA
GAACAAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAA
CCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAA
AGACAAACTATTTAG
Found at i:10082130 original size:215 final size:216
Alignment explanation
Indices: 10081654--10082148 Score: 655
Period size: 215 Copynumber: 2.3 Consensus size: 216
10081644 TAAATAAGTT
* *
10081654 TTTGACAAGTTCGGAAGTT-TGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAT
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10081718 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTA
65 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTA
* * * * ** *
10081783 GAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAACCTAA
130 GAGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAA
*
10081848 GTTATAAAAGAAATCGTGAAAG
195 GTTATAAAAGAAATCGTAAAAG
* * * * *
10081870 TTTGACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10081934 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTA
**
10081997 GAGCATGGAATGTTTGAAAAATT-TCCAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAA-CT
130 GAGCATGGAATGTTTGAAAAATTGTCCA-AAGGAATGGATCT-TCTTGAATACTTTAAGGAACCT
*
10082059 GAAGTTATAAAAG-AACCTGTAAAAG
193 -AAGTTATAAAAGAAATC-GTAAAAG
*
10082084 TTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10082149 GACAAGTTTT
Statistics
Matches: 242, Mismatches: 30, Indels: 15
0.84 0.10 0.05
Matches are distributed among these distances:
213 8 0.03
214 97 0.40
215 104 0.43
216 33 0.14
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (216 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTAG
AGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10082173 original size:62 final size:62
Alignment explanation
Indices: 10082084--10082272 Score: 240
Period size: 62 Copynumber: 3.0 Consensus size: 62
10082074 CCTGTAAAAG
* *
10082084 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10082146 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10082208 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTT
10082270 TTT
1 TTT
10082273 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 6 0.06
62 100 0.93
63 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10082513 original size:60 final size:61
Alignment explanation
Indices: 10082424--10082607 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10082414 ATCGTAAAAG
* * * * * *
10082424 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10082484 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10082546 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10082608 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10082513 original size:338 final size:338
Alignment explanation
Indices: 10081874--10082950 Score: 1572
Period size: 338 Copynumber: 3.2 Consensus size: 338
10081864 TGAAAGTTTG
* * * *
10081874 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10081938 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCGAGCA
* * * * * *
10082002 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10082067 AAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTC
195 AAAAGAAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * *
10082131 TCACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAA
259 TTACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
*
10082196 CGAAAATAAGTTTTTC
323 CGTAAATAAGTTTTTC
*
10082212 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTTTTTAAT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTAAT
10082276 TCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
65 TCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC-GAGC
* * * * *
10082341 ATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAGCCGAATTTA
129 ATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTA
* * * *
10082406 AAAAAGAAATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
194 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10082469 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
259 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10082534 CGTAAATAAGTTTTTC
323 CGTAAATAAGTTTTTC
* * *
10082550 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10082615 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTT-CCGAGCA
*
10082680 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10082745 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10082810 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
260 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10082875 GTAAATAAGTTTTTG
324 GTAAATAAGTTTTTC
* **
10082890 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10082951 GACAAGTTCG
Statistics
Matches: 665, Mismatches: 63, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
338 332 0.50
339 86 0.13
340 242 0.36
341 5 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (338 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCGAGCAT
GGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATA
AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTT
ACGTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGT
AAATAAGTTTTTC
Found at i:10082859 original size:62 final size:62
Alignment explanation
Indices: 10082762--10083009 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10082752 ATTATAAAAG
* *
10082762 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10082824 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10082886 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10082948 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10083010 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10082928 original size:402 final size:401
Alignment explanation
Indices: 10082456--10083227 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10082446 CCCAGAACTA
* * * *
10082456 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10082521 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10082586 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10082650 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10082714 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10082779 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10082844 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10082858 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10082923 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10082988 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10083053 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10083118 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10083183 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10083228 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10083464 original size:62 final size:62
Alignment explanation
Indices: 10083375--10083563 Score: 247
Period size: 62 Copynumber: 3.0 Consensus size: 62
10083365 CCTGTAAAAG
* *
10083375 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10083437 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10083499 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10083561 TTT
1 TTT
10083564 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10083803 original size:60 final size:61
Alignment explanation
Indices: 10083714--10083897 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10083704 ATCGTAAAAG
* * * * * *
10083714 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10083774 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10083836 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10083898 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10084150 original size:62 final size:62
Alignment explanation
Indices: 10084052--10084299 Score: 397
Period size: 62 Copynumber: 4.0 Consensus size: 62
10084042 ATTATAAAAG
* *
10084052 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10084114 GTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10084176 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10084238 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10084300 ATTAATTAAC
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 172 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10084217 original size:402 final size:401
Alignment explanation
Indices: 10083746--10084514 Score: 1065
Period size: 402 Copynumber: 1.9 Consensus size: 401
10083736 CCCAGAACTA
* * * *
10083746 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10083811 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10083876 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10083940 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10084004 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10084069 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTGTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTGTTGACAAGTTTGGATGTTT
10084134 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10084148 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10084213 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10084278 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10084343 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10084408 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10084473 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTT
10084515 TTTAATTTAA
Statistics
Matches: 317, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 27 0.09
402 288 0.91
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTGTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10084754 original size:62 final size:62
Alignment explanation
Indices: 10084665--10084853 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10084655 CCTGTAAAAG
* * *
10084665 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10084727 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10084789 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10084851 TTT
1 TTT
10084854 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10085094 original size:60 final size:61
Alignment explanation
Indices: 10085005--10085188 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10084995 ATCGTAAAAG
* * * * * *
10085005 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10085065 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10085127 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10085189 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10085102 original size:338 final size:336
Alignment explanation
Indices: 10084458--10085531 Score: 1525
Period size: 338 Copynumber: 3.2 Consensus size: 336
10084448 TGAAAGTTTG
* * * *
10084458 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10084522 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTAT-GTATTTCCGAGCA
* * * * * *
10084586 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10084648 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10084713 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
258 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10084778 GAAAATAAGTTTTTC
322 GTAAATAAGTTTTTC
* *
10084793 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10084858 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCTATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATG-TATTTCC-GAGCA
* * * *
10084923 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * *
10084987 AAAAAGAGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
193 TAAAAGA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10085050 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
257 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10085115 CGTAAATAAGTTTTTC
321 CGTAAATAAGTTTTTC
* * *
10085131 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
*
10085196 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGT-ATTT-CCGAGCA
*
10085261 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10085326 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10085391 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
258 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10085456 GTAAATAAGTTTTTG
322 GTAAATAAGTTTTTC
* **
10085471 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10085532 GACAAGTTCG
Statistics
Matches: 661, Mismatches: 61, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
335 28 0.04
336 77 0.12
337 40 0.06
338 302 0.46
339 11 0.02
340 199 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (336 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGTATTTCCGAGCATG
GAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATAA
AAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTAA
ATAAGTTTTTC
Found at i:10085440 original size:62 final size:62
Alignment explanation
Indices: 10085343--10085590 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10085333 ATTATAAAAG
* *
10085343 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10085405 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10085467 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10085529 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10085591 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10085509 original size:402 final size:401
Alignment explanation
Indices: 10085037--10085808 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10085027 CCCAGAACTA
* * * *
10085037 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10085102 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10085167 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10085231 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10085295 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10085360 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10085425 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10085439 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10085504 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10085569 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10085634 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10085699 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10085764 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10085809 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10086045 original size:62 final size:62
Alignment explanation
Indices: 10085956--10086144 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10085946 CCTGTAAAAG
* * *
10085956 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10086018 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10086080 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10086142 TTT
1 TTT
10086145 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10086385 original size:60 final size:61
Alignment explanation
Indices: 10086296--10086479 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10086286 ATCGTAAAAG
* * * * * *
10086296 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10086356 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10086418 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10086480 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10086393 original size:338 final size:337
Alignment explanation
Indices: 10085749--10086822 Score: 1534
Period size: 338 Copynumber: 3.2 Consensus size: 337
10085739 TGAAAGTTTG
* * * *
10085749 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10085813 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCGAGCA
* * * * * *
10085877 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10085939 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10086004 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
259 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10086069 GAAAATAAGTTTTTC
323 GTAAATAAGTTTTTC
* *
10086084 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10086149 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC-GAGCA
* * * *
10086214 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * * *
10086278 AAAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
194 TAAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10086341 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
258 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10086406 CGTAAATAAGTTTTTC
322 CGTAAATAAGTTTTTC
* * *
10086422 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10086487 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTT-CCGAGCA
*
10086552 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10086617 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10086682 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
259 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10086747 GTAAATAAGTTTTTG
323 GTAAATAAGTTTTTC
* **
10086762 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10086823 GACAAGTTCG
Statistics
Matches: 660, Mismatches: 65, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
335 27 0.04
336 79 0.12
337 39 0.06
338 303 0.46
339 10 0.02
340 198 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (337 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCGAGCAT
GGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATA
AAAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTA
AATAAGTTTTTC
Found at i:10086731 original size:62 final size:62
Alignment explanation
Indices: 10086634--10086881 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10086624 ATTATAAAAG
* *
10086634 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10086696 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10086758 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10086820 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10086882 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10086830 original size:402 final size:401
Alignment explanation
Indices: 10086328--10087099 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10086318 CCCAGAACTA
* * * *
10086328 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10086393 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10086458 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10086522 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10086586 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10086651 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10086716 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10086730 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10086795 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10086860 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10086925 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10086990 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10087055 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10087100 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10087336 original size:62 final size:62
Alignment explanation
Indices: 10087247--10087435 Score: 231
Period size: 62 Copynumber: 3.0 Consensus size: 62
10087237 CCTGTAAAAG
* * *
10087247 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10087309 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * *
10087371 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTAACGTAAATAAGTT
10087433 TTT
1 TTT
10087436 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 6 0.06
62 100 0.93
63 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10087381 original size:953 final size:954
Alignment explanation
Indices: 10086084--10087959 Score: 2976
Period size: 953 Copynumber: 2.0 Consensus size: 954
10086074 TAAGTTTTTC
* *
10086084 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10086149 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCA
* *
10086214 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAATATAA
131 TGGAATGTTCGAAAAATTGCCAGAAACAATGGAT-ATCATGAATACTTTCTGGAACCGAATATAA
* * * * *
10086279 AAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
195 AAAAGTAACCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTA
* * * *
10086344 CGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGT
260 CGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGA
* *
10086409 AAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAA
325 AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCACATAAA
*
10086474 TAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGT
390 TAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGC
* *
10086539 GATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTG
455 GATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTG
*
10086604 GAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA
520 GAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA
* *
10086669 GAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAG
585 GAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAG
*
10086734 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAA
650 AAACAATTCTCACGTAAATAAG-TTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAA
** * ** **
10086799 CAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAA
714 CAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAA
* *
10086864 TTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTC
779 TTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTC
* * * * * *
10086929 ACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTT
844 AACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCTTCTT
*
10086994 GAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
909 GAATACCTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
* * * *
10087040 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
* * *
10087104 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTC-GAGC
66 CAAAGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** * *
10087167 ATGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT-T-ATGAATACTTTTTGGAACTGAAGT-TA
130 ATGGAATGTTCGAAAAATTGCCAGAAACAATGGATATCATGAATACTTTCTGGAACCGAA-TATA
* *
10087229 TAAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATT
194 AAAAAGTAACC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAA-CAA-AGAGAAACAATT
*
10087293 CTTACGTAAATAAGTTTTTGACAAGTT-TTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACT
256 CTTACGTAAATAAGTTTTTGACAAGTTCGT-AAGTTCGTACAAGAACCAGGAGAGAAACAATACT
*
10087357 AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCAC
320 AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCAC
* *
10087422 ATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAAT
385 ATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAAT
* *
10087487 TATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACT
450 TATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACT
* * * * * *
10087552 TTCTGGAACCGAATTTATAAAAGAAATCGTAAAAGTTTGAGAAGTTTGGATGTTCGTTCAAGAAC
515 TTCTGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
*
10087617 CAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
580 CAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
*
10087682 GAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGA
645 GAGAGAAACAATTCTCACGTAAATAAGTTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGA
*
10087747 GAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAA
710 GAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAA
*
10087812 ACAATTCTCAGGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTAT
775 ACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTAT
*
10087877 TTTGAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCT
840 TTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCT
10087942 TCTTGAATACCTTAAGGA
905 TCTTGAATACCTTAAGGA
10087960 TCCAAATGAT
Statistics
Matches: 842, Mismatches: 72, Indels: 16
0.91 0.08 0.02
Matches are distributed among these distances:
950 2 0.00
951 59 0.07
952 235 0.28
953 401 0.48
954 39 0.05
955 79 0.09
956 27 0.03
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (954 bp):
ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCA
TGGAATGTTCGAAAAATTGCCAGAAACAATGGATATCATGAATACTTTCTGGAACCGAATATAAA
AAAGTAACCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAA
AATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCACATAAAT
AAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCG
ATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGG
AACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACA
ATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATT
CTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCAA
CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCTTCTTGA
ATACCTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
Found at i:10087659 original size:62 final size:62
Alignment explanation
Indices: 10087587--10087833 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
10087577 ATCGTAAAAG
* * * * *
10087587 TTTGAGAAGTTTGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10087649 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10087710 TTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTG
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*** * * * *
10087772 TTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10087834 ATTAACTAAC
Statistics
Matches: 162, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
61 57 0.35
62 105 0.65
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10087692 original size:340 final size:335
Alignment explanation
Indices: 10087040--10087770 Score: 1049
Period size: 340 Copynumber: 2.2 Consensus size: 335
10087030 TGAAAGTTTG
* * * *
10087040 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * *
10087104 TAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCAT
66 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCAT
* * * * *
10087169 GGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATGAATACTTTTTGGAACTGAAGTTATAAAA
131 GGAATGTTCGAAAAATTGCCAGAAAGAATGGATTATGAATACTTTCTGGAACCGAAGTTATAAAA
10087234 GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
196 GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
* * *
10087299 TAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAA
261 TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAAA
10087364 ATAAGTTTTTC
326 ATAAG-TTTTC
*
10087375 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTTTTTAAT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTAAT
* *
10087439 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
65 TCAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAG
* * *
10087503 CATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATTT
128 CATGGAATGTTCGAAAAATTGCCAGAAAGAATGGAT--T-ATGAATACTTTCTGGAACCGAAGTT
* * *
10087568 ATAAAAGAA-ATCGTAAAAGTTTGAGAAGTTTGGATGTTCGTT-CAAGAACCAAGAGAGAAACAA
190 ATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTC-TTCCAAGAACCAAGAGAGAAACAA
* * *
10087631 TTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
253 TTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATAC
* * *
10087696 TCACGTAAATAAGTTTTG
318 TAACGAAAATAAGTTTTC
* * *
10087714 ATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
10087771 GTTTGACAAG
Statistics
Matches: 352, Mismatches: 34, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
335 29 0.08
336 77 0.22
337 40 0.11
339 55 0.16
340 149 0.42
341 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (335 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCAT
GGAATGTTCGAAAAATTGCCAGAAAGAATGGATTATGAATACTTTCTGGAACCGAAGTTATAAAA
GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAAA
ATAAGTTTTC
Found at i:10087807 original size:123 final size:123
Alignment explanation
Indices: 10087587--10087833 Score: 350
Period size: 123 Copynumber: 2.0 Consensus size: 123
10087577 ATCGTAAAAG
* * * * ** *
10087587 TTTGAGAAGTTTGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
*** *
10087652 GACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
10087710 TTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
1 TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
* * * *
10087775 GACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
10087833 T
1 T
10087834 ATTAACTAAC
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
123 108 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (123 bp):
TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10088166 original size:62 final size:62
Alignment explanation
Indices: 10088067--10088251 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 62
10088057 ATCGTAAAAG
* * * *
10088067 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10088129 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10088191 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTCTCACATAAATAAGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGT
10088252 CATTAATTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10088350 original size:820 final size:819
Alignment explanation
Indices: 10087145--10088782 Score: 2730
Period size: 820 Copynumber: 2.0 Consensus size: 819
10087135 ACTATTTAGA
* *
10087145 CCAAATGATGGGATTTTCGAGCATGGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATGAATA
1 CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTATGAACA
*
10087210 CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGA
66 CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
*
10087275 ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACC
131 ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTGTGAAGTTCGTACAAGAACC
10087340 AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
196 AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
** *
10087405 AGAAAACCAATTCTCACATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACA
261 AGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACA
* *
10087470 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAAT
326 AACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAAT
*
10087535 GGATCATCTTGAATACTTTCTGGAACCGAA-TT-TATAAAAGAAATCGTAAAAGTTTGAGAAGTT
391 GGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGACAAGTT
* * * *
10087598 TGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGG
456 CGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTAG
* *
10087663 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTGATAAGTTTGGAAG
521 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGGAAG
*
10087727 TTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
586 TTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
* *
10087792 ATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
651 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
*
10087857 TTTACAAAATGACAAACTATTTTGAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
716 TTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
10087922 TTGATTAAAGGAATGGATCTTCTTGAATACCTT-AAGGAT
781 TTGATTAAAGGAATGGATCTTCTTGAATA-CTTGAAGGAT
*
10087961 CCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTG
1 CCAAATGATGGGA-TTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTA---TG
*
10088026 AACACTTTTTGGAACTGAAGTTATAAAAGAA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTC
62 AACACTTTTTGGAACTGAAGTTATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTCGTC
*
10088090 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGT-AAGTTCGTCCA
126 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTT-GTGAAGTTCGTACA
* * *
10088154 AGAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGA
190 AGAACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGA
* * *
10088219 ACCAGGAGAGAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTAGAAA
255 ACCAAGAGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAA
*
10088284 AAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGA
320 AAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGA
*
10088349 AAGAGTGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGA
385 AAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGA
10088414 CAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
450 CAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
* *
10088479 GTTTAGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTT
515 GTTTAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTT
* ** * **
10088544 TGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGG
580 TGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAA
** * * * *
10088609 AAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTATTAATTAACAGTCTAA
645 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAA
* *
10088674 AACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCGAGCATGGAATGTTT
710 AACTTGTTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTT
* *
10088739 GGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGA
775 GGAAATTTGATTAAAGGAATGGATCTTCTTGAATACTTGAAGGA
10088783 ACCTAAGTTA
Statistics
Matches: 763, Mismatches: 49, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
816 13 0.02
817 44 0.06
819 1 0.00
820 339 0.44
821 3 0.00
822 137 0.18
823 226 0.30
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (819 bp):
CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTATGAACA
CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTGTGAAGTTCGTACAAGAACC
AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
AGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACA
AACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAAT
GGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGACAAGTT
CGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTAG
AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGGAAG
TTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
TTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
TTGATTAAAGGAATGGATCTTCTTGAATACTTGAAGGAT
Found at i:10088481 original size:62 final size:62
Alignment explanation
Indices: 10088409--10088649 Score: 365
Period size: 62 Copynumber: 3.9 Consensus size: 62
10088399 ATCGTAAAAG
* *
10088409 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * * *
10088471 TTTGACAAGTTTAGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10088533 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10088595 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10088650 CTATGTTATT
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 161 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10089051 original size:213 final size:215
Alignment explanation
Indices: 10088595--10089088 Score: 628
Period size: 215 Copynumber: 2.3 Consensus size: 215
10088585 TAAATAAGTT
* * *
10088595 TTTGACAAGTTCGGAAGTT-TGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTAT
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTT
* * * *
10088659 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTC
64 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
* * * ** *
10088724 GAGCATGGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAA
129 GAGCATGGAATGATTGAAAAATTGTCCAAGAGAATGGATCTTCTTGAATACTTGAAGGAACCTAA
*
10088789 GTTATAAAAGAAATCGTGAAAG
194 GTTATAAAAGAAATCGTAAAAG
* * *
10088811 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTT
*
10088875 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
65 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
***
10088938 GAGCATGGAATGATTGAAAAATTG-CC-AGAAGAATGGAT-TATCTTGAATACTTTTTGGAA-CT
129 GAGCATGGAATGATTGAAAAATTGTCCAAG-AGAATGGATCT-TCTTGAATACTTGAAGGAACCT
*
10088999 GAAGTTATAAAAG-AACCTGTAAAAG
192 -AAGTTATAAAAGAAATC-GTAAAAG
* *
10089024 TTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
10089089 GACAAGTTTT
Statistics
Matches: 242, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
212 8 0.03
213 72 0.30
214 53 0.22
215 74 0.31
216 35 0.14
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTA
ATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTCGA
GCATGGAATGATTGAAAAATTGTCCAAGAGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10089113 original size:62 final size:62
Alignment explanation
Indices: 10089024--10089205 Score: 226
Period size: 62 Copynumber: 2.9 Consensus size: 62
10089014 CCTGTAAAAG
* * *
10089024 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10089086 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* *
10089148 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACGTAAATA
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTAACGTAAATA
10089206 TTTTTTTAAT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 6 0.06
62 94 0.92
63 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10089469 original size:340 final size:336
Alignment explanation
Indices: 10088815--10089551 Score: 1097
Period size: 340 Copynumber: 2.2 Consensus size: 336
10088805 TGAAAGTTTG
* *
10088815 ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
1 ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
10088880 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCATG
66 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
* * *
10088945 GAATGATTGAAAAATTGCCAGAAGAATGGATTATCTTGAATACTTTTTGGAACTGAAGTTATAAA
131 GAATGATTGAAAAATTGCCAGAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAAA
10089010 AGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTAC
196 AGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTAC
* * *
10089075 GTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAA
261 GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAA
10089140 AATAAGTTTTTC
326 AATAAG-TTTTC
* * **
10089152 ACAAGTTCGAAAGTTCGTCCAAGAACCAA-GAGAAAACCAATTCTCACGTAAATATTTTTTTAAT
1 ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAG-AAA-CAATTCTCACGTAAATAAGTTTTTAAT
* *
10089216 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
64 TCAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAG
* * *
10089280 CTTGGAATG-TTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATT
127 CATGGAATGATT-GAAAAATTGCCAG-AAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGT
*
10089344 TATAAAAGAAACC-GTAAAAGTTTGAGAAGTTCGGATGTTCGTT-CAAGAACCAAGAGAGAAACA
190 TATAAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTC-TTCCAAGAACCAAGAGAGAAACA
* * *
10089407 ATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATT
253 ATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATA
* * *
10089472 CTCACGTAAATAAGTTTTG
318 CTAACGAAAATAAGTTTTC
* *
10089491 ATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCATCCAAGAACCAA-GGAGAAACAATTCTCACGTAAATAAGTTTTT
10089552 GACAAGTTCA
Statistics
Matches: 358, Mismatches: 32, Indels: 18
0.88 0.08 0.04
Matches are distributed among these distances:
336 3 0.01
337 29 0.08
338 76 0.21
339 79 0.22
340 162 0.45
341 9 0.03
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (336 bp):
ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
GAATGATTGAAAAATTGCCAGAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAAA
AGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAA
AATAAGTTTTC
Found at i:10089488 original size:51 final size:53
Alignment explanation
Indices: 10089432--10089549 Score: 123
Period size: 61 Copynumber: 2.1 Consensus size: 53
10089422 AGTTTTTGAC
*
10089432 AAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGAT
1 AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACG---ATAA----T-AT
* *
10089493 AAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACG-TAA-AT
1 AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGATAATAT
10089544 AAGTTT
1 AAGTTT
10089550 TTGACAAGTT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
51 8 0.15
57 3 0.06
61 43 0.80
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (53 bp):
AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGATAATAT
Found at i:10089526 original size:61 final size:62
Alignment explanation
Indices: 10089364--10089610 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10089354 ACCGTAAAAG
* * * * * *
10089364 TTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10089426 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10089487 TTTGATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10089549 TTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10089611 ATTAACTAAC
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
61 57 0.34
62 109 0.66
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10089584 original size:123 final size:123
Alignment explanation
Indices: 10089364--10089610 Score: 359
Period size: 123 Copynumber: 2.0 Consensus size: 123
10089354 ACCGTAAAAG
* * * * *
10089364 TTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*** *
10089429 GACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
10089487 TTTGATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10089552 GACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
10089610 T
1 T
10089611 ATTAACTAAC
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
123 109 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (123 bp):
TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10089943 original size:62 final size:62
Alignment explanation
Indices: 10089844--10090028 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 62
10089834 ATCGTAAAAG
* * * *
10089844 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10089906 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10089968 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTCTCACATAAATAAGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGT
10090029 CATTAATTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10090433 original size:62 final size:62
Alignment explanation
Indices: 10090186--10090426 Score: 356
Period size: 62 Copynumber: 3.9 Consensus size: 62
10090176 ATCGTAAAAG
* * *
10090186 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGATAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10090248 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10090310 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10090372 TTTGACAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10090427 CAAAGTTATT
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 161 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10090785 original size:215 final size:215
Alignment explanation
Indices: 10090372--10090867 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 215
10090362 TAAATAAGTT
* * *
10090372 TTTGACAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACA-AAGTTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA-CAATTCTCACGTAA-ATAAGTTTT
* * * * * **
10090436 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTC
64 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCC
* * * * ** * *
10090501 GAGCATGGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAA
129 GAGCATGGAATGTTCGAAAAATTGTCTAAAAGAATGGATCTTCTTGAATACTTTAAGGAACCGAA
* *
10090566 GTTATAAAAGAAATCTTGAAAG
194 GTTATAAAAGAAATCGTAAAAG
* * *
10090588 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTT
*
10090652 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATCATGCGATTTCCC
65 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCC
* **
10090716 GAGCTTGGAATGTTCGAAAAATTG-CTAGAAAGAATGGAT-TATCTTGAATACTTTCTGGAACCG
129 GAGCATGGAATGTTCGAAAAATTGTCTA-AAAGAATGGATCT-TCTTGAATACTTTAAGGAACCG
10090779 AAGTTATAAAAGAAATCGTAAAAG
192 AAGTTATAAAAGAAATCGTAAAAG
* * * * *
10090803 TTTGACAAATTGGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
10090868 GACAAGTTTC
Statistics
Matches: 239, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 4 0.02
215 173 0.72
216 61 0.26
217 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTA
ATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCCGA
GCATGGAATGTTCGAAAAATTGTCTAAAAGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10090900 original size:62 final size:62
Alignment explanation
Indices: 10090819--10091239 Score: 612
Period size: 62 Copynumber: 6.8 Consensus size: 62
10090809 AAATTGGGAT
* * *
10090819 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTCGAT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * *
10090881 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * *
10090943 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAACAAGTTTTTGACAAG-ATCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCG-AA
* * * *
10091005 GTTCATCCAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * * *
10091067 GTTCGTCCTAGAACCAAGAGAGAAAGAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * * *
10091129 GTTCGTACAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTTTTCACAAG-TTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCG-AA
*
10091191 GTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10091240 AATTGAAGGA
Statistics
Matches: 321, Mismatches: 35, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
61 5 0.02
62 314 0.98
63 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
Found at i:10091514 original size:62 final size:62
Alignment explanation
Indices: 10091415--10091541 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10091405 ATCGTAAAAG
* * * * *
10091415 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10091477 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10091539 TTT
1 TTT
10091542 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10091819 original size:62 final size:62
Alignment explanation
Indices: 10091692--10091940 Score: 331
Period size: 62 Copynumber: 4.0 Consensus size: 62
10091682 ATCGTAAAAG
* ** * *
10091692 TTTGACAAGTTCGGATGTTTATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10091752 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
10091814 TTTGACTAGTTTGGACATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * *
10091876 TTTTACCAGTTTGAAAGTTCGTACAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10091938 TTT
1 TTT
10091941 AATTCAAGGA
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
60 26 0.16
61 1 0.01
62 140 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10092184 original size:62 final size:62
Alignment explanation
Indices: 10092087--10092396 Score: 478
Period size: 62 Copynumber: 5.0 Consensus size: 62
10092077 ATAGTAAAAG
* * *
10092087 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACTTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10092149 TTTGACAAGTTCGGATA-TTGGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10092211 TTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10092273 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10092335 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10092397 ATTAATTAAC
Statistics
Matches: 229, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
61 1 0.00
62 228 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10092293 original size:397 final size:394
Alignment explanation
Indices: 10091415--10092337 Score: 1395
Period size: 397 Copynumber: 2.3 Consensus size: 394
10091405 ATCGTAAAAG
* * * *
10091415 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** *
10091480 GACAAGTTCAGAAGTTCGTCCAAGAACCAG-GAGAGACACAACTCTCACGTAAATAAGTTTTTAA
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAGAGAGA-AC-CAATTCTCACGTAAATAAGTTTTTAA
10091544 TTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
129 TTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
* * *
10091609 CATGGAATGTTAGACAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTA
194 CATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAACACTTTCAGGAACCGAAGTTA
* * *
10091674 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTTATCCAAGAACTAAGAGAAACAATTCTT
259 T---A-AAATAGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTT
* *
10091739 ACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
320 ACGTAAATAAGTTTTTGACAAGTTCGGATATTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
10091804 TAAATAAGTT
385 TAAATAAGTT
* *
10091814 TTTGACTAGTTTGGACA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTT
1 TTTGACAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10091878 TTACCAGTTTGAAAGTTCGTACAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAA
65 TGACAAGTTTGGAAGTTCGTCCAAGAACC-AGAGAGAACCAATTCTCACGTAAATAAGTTTTTAA
* *
10091943 TTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTATACCAAATTATGCGATTT-CTCGA
129 TTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCT-GA
* *
10092007 GCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAACACTTTCAGGAACCGAAGT
193 GCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGAT-ATCTTGAACACTTTCAGGAACCGAAGT
*
10092072 TAT-AAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
257 TATAAAATAGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAA-CAA-AGAGAAACAATTCTT
* * * *
10092136 ACTTAAATAAGTTTTTGACAAGTTCGGATATTGGTCCAAGAACCAAGAGAGAAACAATTCTTACG
320 ACGTAAATAAGTTTTTGACAAGTTCGGATATTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
10092201 TAAATAAGTT
385 TAAATAAGTT
* *
10092211 TTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10092276 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
66 GACAAGTTTGGAAGTTCGTCCAAGAACC-AGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10092338 GACAAGTTCA
Statistics
Matches: 475, Mismatches: 41, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
395 38 0.08
396 3 0.01
397 198 0.42
398 2 0.00
399 198 0.42
400 32 0.07
401 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (394 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTCCAAGAACCAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
CAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
TGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAACACTTTCAGGAACCGAAGTTATA
AAATAGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTACGTAA
ATAAGTTTTTGACAAGTTCGGATATTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
AGTT
Found at i:10092713 original size:215 final size:216
Alignment explanation
Indices: 10092335--10092830 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
10092325 TAAATAAGTT
* * * *
10092335 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10092400 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* *
10092465 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10092530 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10092551 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10092615 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10092678 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10092741 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10092766 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10092831 GACAAGTTCA
Statistics
Matches: 243, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
214 8 0.03
215 172 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10092734 original size:459 final size:459
Alignment explanation
Indices: 10091728--10093291 Score: 1346
Period size: 459 Copynumber: 3.3 Consensus size: 459
10091718 GAACTAAGAG
* * * ** * *
10091728 AAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCG-CAAAGAACAAAGAGAGAAA
* * *
10091793 CAATTCTCACGTAAATAAGTTTTTGACTAGTTTGGACA-TTCGTCCAAGAACCAAGAGAGAAACA
65 CAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGAGAGTTCGTCCAAGAACCAAGAGAGAAACA
* * ** * *
10091857 ATTCTCATGTAAATAAGTTTTTTACCAGTTTGAAAGTTCGTACAAGAACCGAGAGAGAACCAATT
129 ATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATT
10091922 CTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAT-A
194 CTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTT-TGA
* * *
10091986 CCAAATTATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTG
258 CCAAATTATGCGATTTCTCGAGCATGGAATGTTTGGAAAATTGCAC-AAAGAATGGATCATCTTG
*
10092051 AACACTTTCAGGAACCGAAGTTAT---A-AATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
322 AATACTTTCAGGAACCGAAGTTATAAAAGAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
* * * * ** * *
10092112 AGAACCAAGAGAGAAACAATTCTTACTTAAATAAGTTTTTGACAAGTTCGGATATTGGTCCAAGA
387 AGAACCAAG-GAGAAACAATTCTTACGTAAATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACA
*
10092177 ACCAAGAGAG
451 A-CAAGAGAC
* * * ** *
10092187 AAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCG-CAAAGAACAAAGAGAGAAA
*
10092252 CAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGAGAAACA
65 CAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGAGAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10092316 ATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATT
129 ATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATT
* * * * **
10092381 CTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTG
194 CTCACGTAAATAAGTTTTTAATTCAA-GGACCAAAACTTGTTTACAAAAA-GACAAACTATTTTG
* * * *
10092444 ACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTT
257 ACCAAATTATGCGATTTCTCGAGCATGGAATGTTTGGAAAATTGCACAAA-GAATGGATCATCTT
* * * * * * *
10092509 GAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTC
321 GAATACTTTCAGGAACCGAAGTTATAAAAGAA-TAGTAAAAGTTTGACAAGTTCGGATGTTCGTC
* *
10092574 CAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAACTT-GT-
385 CAAGAACCAAGGAGAAACAATTCTTACGTAAATAAGTTTTTAA---AAAGTACCAAAA-TTGGTC
** *
10092636 TTACAA-AA-TGAC
446 CAACAACAAGAGAC
* * * *
10092648 AAACAATT-TAGAC-CAAATGATGGGATTTT-CCAAGCATGGAATGTTCG-AAATATTTCTAGAA
1 AAACAATTCT-GACGCAAAT-A--AGATTTTGACAAGCATGGAA-GTTCGCAAAGA--AC-A-AA
* *
10092709 G-GAATGGATTATCTTGAATAGTTTTTGGAACCG-AAGTTATAAAAGAAATCGTAAAAGTTTGAC
57 GAG-A--GA--AAC----A-A--TTAT---A-CGTAA---AT--AAG---T--T-----TTTGAC
* * * * *
10092772 AAGTTCGGA-TGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAA
91 AAGTTTGGAGAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAA
* * * * *
10092836 GTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAG
156 GTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAG
* *
10092901 GACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTC-CTGAGCATGG
221 GACCAAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGCGATTTCTC-GAGCATGG
* * *
10092965 AATG-TTAGACAAATTGCTAGAAAGAATGGAT-ATCTTGAATACTTTCTGGAACCGAAGTTATAA
285 AATGTTTGGA-AAATTGC-ACAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAA
* ** *
10093028 AAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTTATCCAAGAACTAA-GAGAAACAATTCTTAC
348 AAG-AATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGGAGAAACAATTCTTAC
* * **** ** * * *
10093092 GTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAG
412 GTAAATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACAAC-AAGAGAC
* * * * ** * *
10093141 AAACAATTCTCACGTAAATAAGTTTTTGACTAGTTTGGACA-TTCGTCCAAGAACCAAGAGAGAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGA-AGTTCG-CAAAGAACAAAGAGAGAA
* * * * * * * * *
10093205 ACAATTCTCATGTAAATAAGTTTTTTACCAGTTT-GAAAGTTCGTACAAGAATCGAGAGAGAACC
64 ACAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGAGAGTTCGTCCAAGAACCAAGAGAGAAAC
*
10093269 AATTCTCACGTAAATAAGTTTTT
128 AATTCTCATGTAAATAAGTTTTT
10093292 AATTCAAGGA
Statistics
Matches: 897, Mismatches: 134, Indels: 146
0.76 0.11 0.12
Matches are distributed among these distances:
458 12 0.01
459 304 0.34
460 7 0.01
461 68 0.08
462 12 0.01
463 41 0.05
464 43 0.05
465 9 0.01
466 6 0.01
467 2 0.00
468 1 0.00
469 2 0.00
471 3 0.00
473 3 0.00
474 1 0.00
475 1 0.00
476 6 0.01
478 6 0.01
479 2 0.00
480 1 0.00
481 3 0.00
483 3 0.00
485 2 0.00
486 1 0.00
487 2 0.00
488 6 0.01
489 7 0.01
490 4 0.00
491 39 0.04
492 80 0.09
493 204 0.23
494 16 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (459 bp):
AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCGCAAAGAACAAAGAGAGAAAC
AATTATACGTAAATAAGTTTTTGACAAGTTTGGAGAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTTGACCA
AATTATGCGATTTCTCGAGCATGGAATGTTTGGAAAATTGCACAAAGAATGGATCATCTTGAATA
CTTTCAGGAACCGAAGTTATAAAAGAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
CCAAGGAGAAACAATTCTTACGTAAATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACAACAAG
AGAC
Found at i:10092865 original size:62 final size:62
Alignment explanation
Indices: 10092766--10092892 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10092756 ATCGTAAAAG
* * * * *
10092766 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10092828 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10092890 TTT
1 TTT
10092893 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10093128 original size:60 final size:62
Alignment explanation
Indices: 10093043--10093291 Score: 322
Period size: 62 Copynumber: 4.0 Consensus size: 62
10093033 ATCGTAAAAG
* ** * *
10093043 TTTGACAAGTTCGGATGTTTATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10093103 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
10093165 TTTGACTAGTTTGGACATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * * *
10093227 TTTTACCAGTTTGAAAGTTCGTACAAGAATCGAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10093289 TTT
1 TTT
10093292 AATTCAAGGA
Statistics
Matches: 166, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
60 26 0.16
61 1 0.01
62 139 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10093535 original size:62 final size:62
Alignment explanation
Indices: 10093438--10093747 Score: 478
Period size: 62 Copynumber: 5.0 Consensus size: 62
10093428 ATAGTAAAAG
* * *
10093438 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACTTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10093500 TTTGACAAGTTCGGATA-TTGGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10093562 TTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10093624 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10093686 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10093748 ATTAATTAAC
Statistics
Matches: 229, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
61 1 0.00
62 228 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10094064 original size:215 final size:216
Alignment explanation
Indices: 10093686--10094181 Score: 635
Period size: 215 Copynumber: 2.3 Consensus size: 216
10093676 TAAATAAGTT
* * * * *
10093686 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10093751 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10093816 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
*
10093881 TTATAAAAGAACA-CGTGAAAG
196 TTATAAAAGAA-ATCGTAAAAG
* * *
10093902 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10093966 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * **
10094029 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10094092 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10094117 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10094182 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 2 0.01
215 172 0.71
216 67 0.28
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10094085 original size:459 final size:459
Alignment explanation
Indices: 10093079--10094639 Score: 1380
Period size: 459 Copynumber: 3.3 Consensus size: 459
10093069 GAACTAAGAG
* * * ** * ***
10093079 AAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCGAAAAAGAACAAAGAGAGAAA
* *
10093144 CAATTCTCACGTAAATAAGTTTTTGACTAGTTTGGACA-TTCGTCCAAGAACCAAGAGAGAAACA
66 CAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGAGAAACA
* * ** * * *
10093208 ATTCTCATGTAAATAAGTTTTTTACCAGTTTGAAAGTTCGTACAAGAATCGAGAGAGAACCAATT
129 ATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATT
10093273 CTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAT-A
194 CTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTT-TGA
* *
10093337 CCAAATTATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTG
258 CCAAATTATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCAC-AAAGAATGGATCATCTTG
* * *
10093402 AACACTTTCAGGAACCGAAGTTAT--AA-ATA-GTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
322 AATACTTTCAGGAACCGAAGTTATAAAAGAAACGTAAAAGTTTGACAAGTTCGGATGTTCATCCA
* * * * ** * *
10093463 AGAACCAAGAGAGAAACAATTCTTACTTAAATAAGTTTTTGACAAGTTCGGATATTGGTCCAAGA
387 AGAACCAAG-GAGAAACAATTCTTACGTAAATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACA
*
10093528 ACCAAGAGAG
451 A-CAAGAGAC
* * * ** ***
10093538 AAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCGAAAAAGAACAAAGAGAGAAA
*
10093603 CAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
66 CAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
*
10093668 TTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTC
130 TTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATTC
* * * * ***
10093733 TCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGAC
195 TCACGTAAATAAGTTTTTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTATTTTGAC
* * * * * * *
10093797 CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGA
259 CAAATTATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCACAAA-GAATGGATCATCTTGA
* * * * * * *
10093862 ATACTTTAAGGAACCAAAGTTATAAAAGAACACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCA
323 ATACTTTCAGGAACCGAAGTTATAAAAGAA-ACGTAAAAGTTTGACAAGTTCGGATGTTCATCCA
* * **
10093927 AGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAACTT-GT-TT
387 AGAACCAAGGAGAAACAATTCTTACGTAAATAAGTTTTTAA---AAAGTACCAAAA-TTGGTCCA
*
10093989 ACAA-AA-TGAC
448 ACAACAAGAGAC
* * ***
10093999 AAACAATT-TAGAC-CAAATGATGGGATTTT-CCAAGCATGGAATGTTCGAAAAATTTCTAGAAG
1 AAACAATTCT-GACGCAAAT-A--AGATTTTGACAAGCATGGAA-GTTCGAAAAAGAAC-A-AAG
* *
10094061 -GAATGGATTATCTTGAATAGTTTTTGGAACCG-AAGTTATAAAAGAAATCGTAAAAGTTTGACA
59 AG-A--GA--AAC----A-A--TTAT---A-CGTAA---AT--AAG---T--T-----TTTGACA
* * * * * *
10094124 AGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGT
93 AGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGT
* * * * *
10094189 TCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGA
158 TCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAGGA
* *
10094254 CCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTC-CTGAGCATGGAA
223 CCAAAACTTGTTTACAAAAAGACAAACTATTTTGACCAAATTATGCGATTTCTC-GAGCATGGAA
* *
10094318 TGTTAGAAAAATTGCTAGAAAGAATGGAT-ATCTTGAATACTTTCTGGAACCGAAGTTATAAAAG
287 TGTTAGAAAAATTGC-ACAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAG
* *
10094382 AAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAA-GAGAAACAATTCTTACGTA
351 AAA-CGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGGAGAAACAATTCTTACGTA
* * **** ** * * * *
10094446 AATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAG
415 AATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACAAC-AAGAGAC
* * * ** *** *
10094492 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAA
1 AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCGAAAAAGAACAAAGAGAGAAA
* * *** *
10094557 CAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAA
66 CAATTAT-ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* *
10094622 TTCTCACGTAACTAAGTT
130 TTCTCATGTAAATAAGTT
10094640 ATTAATTAAC
Statistics
Matches: 893, Mismatches: 144, Indels: 128
0.77 0.12 0.11
Matches are distributed among these distances:
458 7 0.01
459 307 0.34
460 5 0.01
461 69 0.08
462 12 0.01
463 42 0.05
464 40 0.04
465 9 0.01
466 6 0.01
467 2 0.00
468 1 0.00
469 2 0.00
471 3 0.00
473 3 0.00
474 1 0.00
475 1 0.00
476 6 0.01
478 6 0.01
479 2 0.00
480 1 0.00
481 3 0.00
483 3 0.00
485 2 0.00
486 1 0.00
487 2 0.00
488 6 0.01
489 7 0.01
490 5 0.01
491 43 0.05
492 79 0.09
493 206 0.23
494 11 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (459 bp):
AAACAATTCTGACGCAAATAAGATTTTGACAAGCATGGAAGTTCGAAAAAGAACAAAGAGAGAAA
CAATTATACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTACAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTTGACCA
AATTATGCGATTTCTCGAGCATGGAATGTTAGAAAAATTGCACAAAGAATGGATCATCTTGAATA
CTTTCAGGAACCGAAGTTATAAAAGAAACGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAA
CCAAGGAGAAACAATTCTTACGTAAATAAGTTTTTAAAAAGTACCAAAATTGGTCCAACAACAAG
AGAC
Found at i:10094216 original size:62 final size:62
Alignment explanation
Indices: 10094117--10094243 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10094107 ATCGTAAAAG
* * * * *
10094117 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* * *
10094179 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10094241 TTT
1 TTT
10094244 AATTCAAGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10094518 original size:62 final size:62
Alignment explanation
Indices: 10094394--10094639 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10094384 ATCGTAAAAG
* * * * *
10094394 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10094454 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10094516 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10094578 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10094640 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10094812 original size:677 final size:675
Alignment explanation
Indices: 10093902--10095253 Score: 2244
Period size: 676 Copynumber: 2.0 Consensus size: 675
10093892 CACGTGAAAG
** * * *
10093902 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTATTA
*
10093967 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
* * * ** *
10094032 GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
10094097 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAAT
10094162 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCT
10094227 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACC-
10094292 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
390 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
10094357 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
455 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
* *
10094422 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
520 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
***
10094487 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
585 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAG
*
10094552 AGAAACAATTCTCATGTAAATAAGTT
650 AGAAACAATTCTCACGTAAATAAGTT
* * *
10094578 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCAAAAGTTCATCCAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTATT
* ** * * *
10094643 AA-TTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGA-TTTCT
65 AATTTAA-AGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTC-
* * * * *
10094706 CGAGCATGGATTGTTTG-GAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
128 CAAGCATGGAATGTTCGAAAAATTT-CTA-AAAGGAATGGATCATCTTGAATACTTTAAGGAACC
* * * * *
10094769 AAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTA
191 AAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAA
10094834 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACA
256 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACA
*
10094899 ACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACGAAAAGACAAACTATTTA
321 ACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTA
10094964 GACCAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTG
386 GACCAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTG
10095029 AATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCC
451 AATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCC
10095094 CAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAA
516 CAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAA
* * *
10095159 CCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCA
581 CAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAACCA
*
10095224 AGAGAGAAACAATTCTCACGTAACTAAGTT
646 AGAGAGAAACAATTCTCACGTAAATAAGTT
10095254 ATTAATTAAC
Statistics
Matches: 629, Mismatches: 42, Indels: 10
0.92 0.06 0.01
Matches are distributed among these distances:
676 320 0.51
677 309 0.49
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (675 bp):
TTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTATTA
ATTTAAAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
GCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAAT
TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
ATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATAC
TTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAA
CTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAG
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGA
GAAACAATTCTCACGTAAATAAGTT
Found at i:10094893 original size:62 final size:62
Alignment explanation
Indices: 10094794--10094920 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10094784 TTTGTGAAAG
* * * * *
10094794 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
*
10094856 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
10094918 TTT
1 TTT
10094921 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
Found at i:10095188 original size:62 final size:62
Alignment explanation
Indices: 10095070--10095253 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 62
10095060 ATCGTAAAAG
* * * * *
10095070 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10095130 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10095192 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10095254 ATTAATTAAC
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
60 25 0.23
61 2 0.02
62 82 0.75
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10095570 original size:215 final size:216
Alignment explanation
Indices: 10095192--10095687 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
10095182 TAAATAAGTT
* * * *
10095192 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10095257 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10095322 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10095387 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10095408 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10095472 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10095535 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10095598 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10095623 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10095688 GACAAGTTCA
Statistics
Matches: 243, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
214 8 0.03
215 172 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10095722 original size:62 final size:62
Alignment explanation
Indices: 10095623--10095749 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10095613 ATCGTAAAAG
* * * * *
10095623 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10095685 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10095747 TTT
1 TTT
10095750 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10096022 original size:62 final size:62
Alignment explanation
Indices: 10095900--10096083 Score: 264
Period size: 62 Copynumber: 3.0 Consensus size: 62
10095890 ATCGTAAAAG
* * * *
10095900 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10095960 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10096022 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10096084 ATTAATTAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
60 26 0.24
61 2 0.02
62 82 0.75
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10096176 original size:830 final size:830
Alignment explanation
Indices: 10094578--10096913 Score: 4137
Period size: 830 Copynumber: 2.8 Consensus size: 830
10094568 TAAATAAGTT
** * * * *
10094578 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
* * ** * * *
10094643 AA-TTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGA-TTTCT
65 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTC-
* * * * * * * * **
10094706 CGAGCATGGATTGTTTGGAAAT-TTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
128 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
* * * * *
10094769 AAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTA
191 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
10094834 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTA-AC
256 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG-ACAC
*
10094898 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACGAAAAGACAAACTATTT
320 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTT
10094963 AGACC-AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
385 AGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
10095027 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
450 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
*
10095092 CCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAG
515 CCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAG
10095157 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAAC
580 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAAC
*
10095222 CAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTACAAAAT
645 CAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAAT
10095287 TTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAAAGTTTGGAAATTTGCACAAAG
710 TTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAAAGTTTGGAAATTTGCACAAAG
*
10095352 GAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTGAAAG
775 GAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTGAAAG
10095408 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
10095473 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
10095538 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
10095603 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10095668 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
10095733 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
10095798 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
391 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
10095863 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
456 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
10095928 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAA
521 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAA
10095993 GAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAG
586 GAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAG
10096058 AGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAA
651 AGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAA
*
10096123 CTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCACAAAGGAATGT
716 CTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGT
* *
10096188 ATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
781 ATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTGAAAG
10096238 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
10096303 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
10096368 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
10096433 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10096498 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
10096563 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
*
10096628 AATTATGCGATTTCCTGAGCATGGAATGTTAGACAAATTGCTAGAAAGAATGGATATCTTGAATA
391 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
*
10096693 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTTATCCAAGA
456 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
* *
10096758 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAA
521 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAA
* * ** * *
10096823 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACTAGTTTGGACA-TTCGTCCAAGAACCAAGA
586 GAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAG-TTCAAAAGTTCGTTCAAGAACCAAGA
* *
10096887 GAGAAACAATTCTCATGTAAATAAGTT
650 GAGAAACAATTCTCACGTAACTAAGTT
10096914 TTTTACCAGT
Statistics
Matches: 1452, Mismatches: 47, Indels: 14
0.96 0.03 0.01
Matches are distributed among these distances:
828 8 0.01
829 307 0.21
830 1133 0.78
831 4 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (830 bp):
TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAA
GAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAG
AGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAA
CTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGT
ATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTGAAAG
Found at i:10096342 original size:337 final size:335
Alignment explanation
Indices: 10095646--10096316 Score: 807
Period size: 337 Copynumber: 2.0 Consensus size: 335
10095636 GATGTTCGTC
* * * * *
10095646 CAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAA
1 CAAGAACCAAAAGACAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAA
* * * *
10095711 GAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACA
66 GAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAATTCAAAGACCAAAACTGGTTTACA
*
10095776 AAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTA
131 AAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTA
* ** *
10095841 GAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGAC
196 CAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGAC
* * * *
10095906 AAGTTCGGATGTTCATCCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTT
261 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTT-A-AAGTT
* ** ***
10095971 TGGAAGTTCGTC
324 TGAAAGACCAAA
* * * *
10095983 CAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAA
1 CAAGAACCAAAAGACAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAA
* * * *
10096048 GAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCCAAAACTTGTTTA-
66 GAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAATTCAA-AGACCAAAACTGGTTTAC
** * * * * *
10096111 AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGAGCATGGAATGTTTGGAAATTTG
130 AAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCATGGAATGTTAGAAAAATTG
* * * *
10096175 C-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAGT
193 CTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGT
* * *
10096239 TTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT-A
256 TTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAATTCTCACGTAAATAAGTTTTTAA
10096303 A-TTT-AAAGACCAAA
320 AGTTTGAAAGACCAAA
10096317 ACTTGTTTAC
Statistics
Matches: 286, Mismatches: 42, Indels: 15
0.83 0.12 0.04
Matches are distributed among these distances:
334 4 0.01
335 3 0.01
336 15 0.05
337 167 0.58
338 69 0.24
339 28 0.10
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (335 bp):
CAAGAACCAAAAGACAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAA
GAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAATTCAAAGACCAAAACTGGTTTACA
AAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTA
CAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAATCGTAAAAGTTTGAC
AAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCACGTAAATAAGTTTTTAAAGTTTG
AAAGACCAAA
Found at i:10096400 original size:215 final size:216
Alignment explanation
Indices: 10096022--10096517 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
10096012 TAAATAAGTT
* * * *
10096022 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10096087 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* *
10096152 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10096217 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10096238 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10096302 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10096365 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10096428 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10096453 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10096518 GACAAGTTCA
Statistics
Matches: 243, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
214 8 0.03
215 172 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10096552 original size:62 final size:62
Alignment explanation
Indices: 10096453--10096579 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10096443 ATCGTAAAAG
* * * * *
10096453 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10096515 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10096577 TTT
1 TTT
10096580 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10096857 original size:62 final size:62
Alignment explanation
Indices: 10096730--10096978 Score: 331
Period size: 62 Copynumber: 4.0 Consensus size: 62
10096720 ATCGTAAAAG
* ** * *
10096730 TTTGACAAGTTCGGATGTTTATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10096790 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
10096852 TTTGACTAGTTTGGACATTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * * *
10096914 TTTTACCAGTTTGAAAGTTCGTACAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10096976 TTT
1 TTT
10096979 AATTCAAGGA
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
60 26 0.16
61 1 0.01
62 140 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10097221 original size:62 final size:62
Alignment explanation
Indices: 10097124--10097433 Score: 478
Period size: 62 Copynumber: 5.0 Consensus size: 62
10097114 ATAGTAAAAG
* * *
10097124 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACTTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10097186 TTTGACAAGTTCGGATA-TTGGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10097248 TTTGACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10097310 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10097372 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10097434 AGTAATTAAC
Statistics
Matches: 229, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
61 1 0.00
62 228 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10097750 original size:215 final size:216
Alignment explanation
Indices: 10097372--10097867 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 216
10097362 TAAATAAGTT
* * * * **
10097372 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10097437 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10097502 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
*
10097567 TTATAAAAGAACA-CGTGAAAG
196 TTATAAAAGAA-ATCGTAAAAG
* * *
10097588 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10097652 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * **
10097715 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10097778 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10097803 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10097868 GACAAGTTCA
Statistics
Matches: 240, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 2 0.01
215 171 0.71
216 67 0.28
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10097902 original size:62 final size:62
Alignment explanation
Indices: 10097803--10097929 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10097793 ATCGTAAAAG
* * * * *
10097803 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* * *
10097865 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10097927 TTT
1 TTT
10097930 AATTCAAGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10098101 original size:277 final size:276
Alignment explanation
Indices: 10097609--10098204 Score: 903
Period size: 278 Copynumber: 2.2 Consensus size: 276
10097599 TGAAAGTTTA
* *
10097609 TCCAAGAACCAAGGAGA-T-ACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTG
1 TCCAAGAACC-AGGAGAGTAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGG
* * *
10097672 TTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAAGCATGGAATGTTCGAAAAA
65 TTTACAAAAAGACAAACAATTTAGACCAAATGATGCGATTTTCCAAGCATGGAATGTTAGAAAAA
* * * *
10097737 TTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAA
130 TTGCTAGAAAGAATGGATTATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAA
*
10097802 GTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTT
195 GTTTGACAAGTTCGGATGTTCATCCAAGAA-CAA-AGAGAAACAATTCTTACGTAAATAAGTTTT
10097867 TGACAAGTTCAGAAGTTCG
258 TGACAAGTTCAGAAGTTCG
* *
10097886 TCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGT
1 TCCAAGAACCAGGAGAGTAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGGT
* * *
10097951 TTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTTCCTGAGCATGGAATGTTAGAAAAA
66 TTACAAAAAGACAAACAATTTAGACCAAATGATGCGATTTTCC-AAGCATGGAATGTTAGAAAAA
10098015 TTGCTAGAAAGAATGGA-TATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAA
130 TTGCTAGAAAGAATGGATTATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAA
* *
10098079 GTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTG
195 GTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTACGTAAATAAGTTTTTG
** *
10098144 ACAAGTTTGGATGTTCG
260 ACAAGTTCAGAAGTTCG
* * * * *
10098161 TCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATATGTTTTT
1 TCCAAGAACCAGGAGAGTAACAATTCTCACGTAAATAAGTTTTT
10098205 GACAAGTTTG
Statistics
Matches: 290, Mismatches: 26, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
275 83 0.29
276 8 0.03
277 90 0.31
278 109 0.38
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (276 bp):
TCCAAGAACCAGGAGAGTAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTGGT
TTACAAAAAGACAAACAATTTAGACCAAATGATGCGATTTTCCAAGCATGGAATGTTAGAAAAAT
TGCTAGAAAGAATGGATTATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
TTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
CAAGTTCAGAAGTTCG
Found at i:10098205 original size:62 final size:62
Alignment explanation
Indices: 10098080--10098325 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
10098070 ATCGTAAAAG
* * * * *
10098080 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10098140 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATATGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10098202 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10098264 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10098326 AGTAATTAAC
Statistics
Matches: 165, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 139 0.84
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10098362 original size:892 final size:892
Alignment explanation
Indices: 10097186--10099436 Score: 4252
Period size: 892 Copynumber: 2.5 Consensus size: 892
10097176 TAAATAAGTT
* ** * *
10097186 TTTGACAAGTTCGGATATTGGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTTTTT
*
10097251 GACAAGTTTGGAAGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
64 GACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
10097316 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAG
129 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAG
10097381 TTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAG
194 TTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAG
10097446 TCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAA
259 TCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAA
10097511 TGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
324 TGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
10097576 AACACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTA
389 AACACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTA
10097641 AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGAT
454 AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGAT
10097706 GGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTT
519 GGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTT
10097771 TGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA
584 TGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA
10097836 GAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAG
649 GAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAG
10097901 AGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAA
714 AGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAA
10097966 CTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGG
779 CTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGG
10098031 ATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
844 ATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
10098080 TTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
1 TTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
*
10098145 CAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATATGTTTTTGACAA
66 CAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
10098210 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTT
131 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTT
10098275 CAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAGTC
196 CAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAGTC
10098340 CAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATG
261 CAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATG
10098405 TTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
326 TTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
10098470 CACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTAAA
391 CACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTAAA
10098535 TAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGG
456 TAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGG
10098600 GATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTG
521 GATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTG
*
10098665 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA
586 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGA
10098730 GAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG
651 GAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG
10098795 TAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACT
716 TAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACT
10098860 ATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGAT
781 ATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGAT
10098925 ATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
846 ATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
10098972 TTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
1 TTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
10099037 CAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
66 CAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
10099102 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTT
131 GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTT
*
10099167 CAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTC
196 CAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAGTC
* *
10099232 CAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGATTG
261 CAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATG
*
10099297 TTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
326 TTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
*** * * * ** * *
10099362 TTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAA-GAGAGTAACAATTCTTATGTA
391 CACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGA-T-ACAATTCTCACGTA
*
10099426 CATAAGTTTTT
454 AATAAGTTTTT
10099437 GACAAGTTCA
Statistics
Matches: 1331, Mismatches: 24, Indels: 5
0.98 0.02 0.00
Matches are distributed among these distances:
891 4 0.00
892 1278 0.96
893 24 0.02
894 25 0.02
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (892 bp):
TTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGA
CAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
GTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTT
CAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAATTAACAGTC
CAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATG
TTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
CACGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCACGTAAA
TAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGG
GATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTG
GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGA
GAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG
TAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACT
ATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGAT
ATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAG
Found at i:10098584 original size:399 final size:397
Alignment explanation
Indices: 10097803--10098557 Score: 957
Period size: 399 Copynumber: 1.9 Consensus size: 397
10097793 ATCGTAAAAG
* * *
10097803 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * **
10097868 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTAGTAAT
* *
10097933 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10097998 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10098063 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10098128 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10098193 AAATATGTT
389 AAATATGTT
* * *
10098202 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10098267 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTAGTAAT
* * *** * *
10098332 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10098395 GCATGGAATGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * *
10098459 TTATAAAAGAACA-CGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAA
257 TTATAAAAGAA-ATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10098523 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10098558 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 191 0.63
400 67 0.22
401 29 0.10
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTAGTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATATGTT
Found at i:10098642 original size:215 final size:216
Alignment explanation
Indices: 10098264--10098759 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 216
10098254 TAAATAAGTT
* * * **
10098264 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10098329 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10098394 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
*
10098459 TTATAAAAGAACA-CGTGAAAG
196 TTATAAAAGAA-ATCGTAAAAG
* ** *
10098480 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10098544 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * **
10098607 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10098670 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10098695 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10098760 GACAAGTTCA
Statistics
Matches: 239, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 2 0.01
215 170 0.71
216 67 0.28
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10098794 original size:62 final size:62
Alignment explanation
Indices: 10098695--10098821 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10098685 ATCGTAAAAG
* * * * *
10098695 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10098757 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10098819 TTT
1 TTT
10098822 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10099096 original size:62 final size:62
Alignment explanation
Indices: 10098972--10099217 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10098962 ATCGTAAAAG
* * * * *
10098972 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10099032 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10099094 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10099156 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10099218 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10099471 original size:62 final size:62
Alignment explanation
Indices: 10099372--10099498 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10099362 TTTGTGAAAG
* * * * * *
10099372 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAATTCTTATGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
*
10099434 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
10099496 TTT
1 TTT
10099499 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
Found at i:10099773 original size:62 final size:62
Alignment explanation
Indices: 10099649--10099894 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10099639 ATCGTAAAAG
* * * *
10099649 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10099709 TTTGACAAGTTTGGATGTTCGTCCAATAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10099771 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10099833 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10099895 ATTAATTAAC
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 26 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10099811 original size:677 final size:676
Alignment explanation
Indices: 10098480--10100112 Score: 2801
Period size: 677 Copynumber: 2.4 Consensus size: 676
10098470 CACGTGAAAG
** ** * * * *
10098480 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
* * ** * * *
10098544 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCT-
* * * * * * * * **
10098607 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CGAGCATGGATTGTTTG-GAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
* * * *
10098670 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
192 AAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG-A
10098735 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACA
256 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACA
10098800 ACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTA
321 ACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTA
10098865 GACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTT
386 GACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTT
10098930 GAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATC
451 GAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATC
* *
10098995 CCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGA
516 CAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGA
10099060 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACC
581 ACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACC
10099125 AAGAGAGAAACAATTCTCATGTAAATAAGTT
646 AAGAGAGAAACAATTCTCATGTAAATAAGTT
10099156 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
10099221 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
10099286 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
10099351 TTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAA
196 TTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG-AACAA
*
10099416 TTCTTATGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTC
260 TTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTC
*
10099481 TCACGTAAATAAGTTTTTAATTCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATTTAGACC
325 TCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACC
10099546 AAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAAT
390 AAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAAT
10099611 ACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAG
455 ACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAG
*
10099676 AACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAATAACAA
520 AACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAA
10099741 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGA
585 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGA
10099806 GAGAAACAATTCTCATGTAAATAAGTT
650 GAGAAACAATTCTCATGTAAATAAGTT
10099833 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
10099898 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
*
10099963 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10100028 TTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAA
196 TTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA-ACAA
* *
10100092 TTCTCACGTAAATAAGTTTTT
260 TTCTTACGTACATAAGTTTTT
10100113 AATTTAAAGA
Statistics
Matches: 909, Mismatches: 42, Indels: 12
0.94 0.04 0.01
Matches are distributed among these distances:
675 1 0.00
676 65 0.07
677 842 0.93
678 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (676 bp):
TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAACAAT
TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTCATGTAAATAAGTT
Found at i:10100153 original size:399 final size:397
Alignment explanation
Indices: 10099372--10100126 Score: 957
Period size: 399 Copynumber: 1.9 Consensus size: 397
10099362 TTTGTGAAAG
* * * *
10099372 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAATTCTTATGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
* * * *
10099437 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *
10099502 TCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10099567 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * *
10099632 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10099697 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAATAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACCAATAACAAAGAGACAAACAATTCTCACGT
10099762 AAATAAGTT
389 AAATAAGTT
*
10099771 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
* * *
10099836 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10099901 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * * *
10099963 AGCATGGATTGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * * *
10100027 GTTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10100092 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10100127 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 186 0.61
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACCAATAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10100211 original size:215 final size:216
Alignment explanation
Indices: 10099833--10100328 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
10099823 TAAATAAGTT
* * * *
10099833 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10099898 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10099963 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10100028 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10100049 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10100113 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10100176 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10100239 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10100264 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10100329 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 34, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 170 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10100363 original size:62 final size:62
Alignment explanation
Indices: 10100264--10100390 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10100254 ATCGTAAAAG
* * * * *
10100264 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10100326 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10100388 TTT
1 TTT
10100391 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10100665 original size:62 final size:62
Alignment explanation
Indices: 10100541--10100786 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10100531 ATCGTAAAAG
* * * * *
10100541 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10100601 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10100663 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10100725 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10100787 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10101102 original size:214 final size:216
Alignment explanation
Indices: 10100725--10101219 Score: 626
Period size: 214 Copynumber: 2.3 Consensus size: 216
10100715 TAAATAAGTT
* * * *
10100725 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10100790 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10100855 AGCATGATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10100920 TTATAAAAG-AATTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10100940 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10101004 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * **
10101067 CAAGCATGGA-ATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAAC
129 CAAGCAT-GATATGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAAC
*
10101129 CGAAGTTATAAAAGAAATCGTAAAAG
191 CAAAGTTATAAAAGAAATCGTAAAAG
* * * *
10101155 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10101220 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 32, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
213 1 0.00
214 129 0.54
215 84 0.35
216 27 0.11
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10101254 original size:62 final size:62
Alignment explanation
Indices: 10101155--10101281 Score: 184
Period size: 62 Copynumber: 2.0 Consensus size: 62
10101145 ATCGTAAAAG
* * * * *
10101155 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
*
10101217 TTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAA-GAGAGAAACAACTCTCACGTAAATAAGTT
10101279 TTT
1 TTT
10101282 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 3 0.05
62 55 0.95
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10101405 original size:891 final size:892
Alignment explanation
Indices: 10099156--10101896 Score: 4949
Period size: 891 Copynumber: 3.1 Consensus size: 892
10099146 TAAATAAGTT
* * * * *
10099156 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
* * ** * * *
10099221 AA-TTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGA-TTTCT
65 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTC-
* * * * * * * * **
10099284 CGAGCATGGATTGTTTG-GAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
128 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
* * * * *
10099347 AAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTA
191 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
*
10099412 ACAATTCTTATGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTA-AC
256 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG-ACAC
*
10099476 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATTT
320 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTT
10099541 AGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
385 AGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
10099606 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
450 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
* * *
10099671 CCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAT
515 CCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAG
10099736 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAAC
580 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAAC
10099801 CAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAA
645 CAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAA
10099866 GAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTC
710 GAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTC
10099931 AAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAA
775 AAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAA
*
10099996 TGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
840 TGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
*
10100049 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
10100114 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
*
10100179 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
10100244 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10100309 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
10100374 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
*
10100439 AATTATGCGATATCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
391 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
10100504 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
456 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
10100569 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
521 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
10100634 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
586 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
*
10100699 AGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGA
651 AGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGA
10100764 AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTA
716 AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTA
10100829 TTTTGACCAAATGATGTGATTTCTCGAGCAT-GATGTGTTTGGAAATTTGCACAAAGGAATGTAT
781 TTTTGACCAAATGATGTGATTTCTCGAGCATGGAT-TGTTTGGAAATTTGCACAAAGGAATGTAT
10100893 CATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA-TTGTGAAAG
845 CATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
*
10100940 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
10101005 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
10101070 GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
10101135 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
*
10101200 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAGGAGAGACACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
10101265 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
10101330 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
391 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
10101395 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
456 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
10101460 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
521 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
10101525 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
586 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
10101590 AGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGA
651 AGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGA
10101655 AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTA
716 AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTA
10101720 TTTTGACCAAATGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATC
781 TTTTGACCAAATGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATC
10101785 ATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
846 ATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
* * * * *
10101832 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAA-GAGAGTAACAATTCTTATGTACATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGA-T-ACAATTCTCACGTAAATAAGTTTT
10101896 T
64 T
10101897 GACAAGTTCA
Statistics
Matches: 1791, Mismatches: 47, Indels: 20
0.96 0.03 0.01
Matches are distributed among these distances:
891 891 0.50
892 833 0.47
893 67 0.04
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (892 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGA
AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTA
TTTTGACCAAATGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATC
ATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
Found at i:10101556 original size:62 final size:62
Alignment explanation
Indices: 10101432--10101677 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10101422 ATCGTAAAAG
* * * * *
10101432 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10101492 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10101554 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10101616 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10101678 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10101931 original size:62 final size:62
Alignment explanation
Indices: 10101832--10101958 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10101822 TTTGTGAAAG
* * * * * *
10101832 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAATTCTTATGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
*
10101894 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
10101956 TTT
1 TTT
10101959 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGTAACAACTCTCACGTAAATAAGTT
Found at i:10102231 original size:62 final size:62
Alignment explanation
Indices: 10102109--10102292 Score: 264
Period size: 62 Copynumber: 3.0 Consensus size: 62
10102099 ATCGTAAAAG
* * * *
10102109 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10102169 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10102231 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10102293 ATTAATTAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
60 26 0.24
61 2 0.02
62 82 0.75
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10102232 original size:337 final size:336
Alignment explanation
Indices: 10101155--10102510 Score: 1276
Period size: 337 Copynumber: 4.0 Consensus size: 336
10101145 ATCGTAAAAG
* *
10101155 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10101220 GACAAGTTCAGAAGTTCGTCCAAGAA-CAAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAA
66 GACAAGTTCAGAAGTTCGTCCAAGAACCAA-GAGAGAAACAACTCTCACGTAAATAAGTTTTTAA
10101284 TTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
130 TTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
10101349 CATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTA
195 CATGGAATGTTAGAAAAATTGC-AGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTA
* *
10101414 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTT
259 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAACAATTCTT
10101479 ACGTAAATAAGTT
324 ACGTAAATAAGTT
* * *
10101492 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** * * *
10101557 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGA-
66 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAAT
** * * * * * * * * **
10101621 -CAA-GTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAT-TAA
131 TCAAGGACCAAAA-CTGGTT-TACAA--AA-AGACAAACTATT-T-A-G--ACCAAATTATGCGA
** * ** * * ** * * * ** *
10101683 TTAACAGTCCA--AAACTTGTTTA-AAAAATTTCA-AACTATTTTGACCA-AATGATGTGA-TTT
186 TTTCCTGAGCATGGAA--TG-TTAGAAAAATTGCAGAAAGA-ATGGA-TATCTTGA-AT-ACTTT
* * * * * *** * * * * * *
10101742 CTCGAGCATGGA-TTGT-TTGGAAATTTGCACAAAG---GA-ATGTATC--ATCTTGAATACTTT
244 CTGGAAC-CGAAGTTATAAAAGAAA-TCGTA-AAAGTTTGACAAGT-TCGGATGTT-CAT-C--C
* * *
10101799 AAGGAACCAA-AGTTATAAAAGAAT-TT--GT-GA-AAG--
301 AA-GAACCAAGAG--A-AACA-ATTCTTACGTAAATAAGTT
* * * *
10101832 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTAACAATTCTTATGTACATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10101897 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAAT
*
10101962 TCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
10102027 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGC-AGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
*
10102092 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACTAAGAGAAACAATTCTTA
260 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAACAATTCTTA
10102157 CGTAAATAAGTT
325 CGTAAATAAGTT
* * *
10102169 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
10102234 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAAT
* * * *** * * *
10102299 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-GGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCT-GA
* * * * * ** *
10102362 GCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGT
194 GCATGGAATGTTAGAAAAATTGCAGAAA-GAATGGAT-ATCTTGAATACTTTCTGGAACCGAAGT
* * * * * * * *
10102427 TATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATT
257 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA-GAGAAACAATT
*
10102492 CTCACGTAAATAAGTT
321 CTTACGTAAATAAGTT
10102508 TTT
1 TTT
10102511 AATTTAAAGA
Statistics
Matches: 799, Mismatches: 157, Indels: 124
0.74 0.15 0.11
Matches are distributed among these distances:
330 2 0.00
331 5 0.01
332 1 0.00
333 26 0.03
334 44 0.06
335 22 0.03
336 22 0.03
337 312 0.39
338 88 0.11
339 44 0.06
340 121 0.15
341 14 0.02
342 22 0.03
343 42 0.05
344 26 0.03
345 1 0.00
346 5 0.01
347 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (336 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTTTTAAT
TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATA
AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAAACAATTCTTAC
GTAAATAAGTT
Found at i:10102271 original size:677 final size:676
Alignment explanation
Indices: 10100940--10102292 Score: 2239
Period size: 677 Copynumber: 2.0 Consensus size: 676
10100930 ATTGTGAAAG
** * *
10100940 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTATTA
*
10101005 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 ATTTAAAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
* * * ** *
10101070 GCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
131 GCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
10101135 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
196 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10101200 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAGGAGAGACACAACTCT
261 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAGGAGAGACACAACTCT
10101265 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
326 CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
10101330 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
391 AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
*
10101395 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGA
456 CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
* *
10101460 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAA
521 ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
***
10101525 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
586 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAG
*
10101590 AGAAACAATTCTCATGTAAATAAGTT
651 AGAAACAATTCTCACGTAAATAAGTT
* *
10101616 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTATT
* ** * * *
10101681 AA-TTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGA-TTTCT
65 AATTTAA-AGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTC-
* * * * *
10101744 CGAGCATGGATTGTTTG-GAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
128 CAAGCATGGAATGTTCGAAAAATTT-CTA-AAAGGAATGGATCATCTTGAATACTTTAAGGAACC
* * * *
10101807 AAAGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGTA
191 AAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
* *
10101872 ACAATTCTTATGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTA-AC
256 ACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAGGAGAG-ACAC
*
10101936 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATTT
320 AACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTT
10102001 AGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
385 AGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCT
10102066 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
450 TGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCAT
10102131 CCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAG
515 CCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAG
* * *
10102196 AACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAAC
580 AACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAAC
*
10102261 CAAGAGAGAAACAATTCTCACGTAACTAAGTT
645 CAAGAGAGAAACAATTCTCACGTAAATAAGTT
10102293 ATTAATTAAC
Statistics
Matches: 629, Mismatches: 42, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
676 46 0.07
677 582 0.93
678 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (676 bp):
TTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTATTA
ATTTAAAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
GCATGGAATGTTCGAAAAATTTCTAAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAGGAGAGACACAACTCT
CACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCA
AATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATA
CTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
ACTAAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
GAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTT
Found at i:10102609 original size:215 final size:216
Alignment explanation
Indices: 10102231--10102726 Score: 660
Period size: 215 Copynumber: 2.3 Consensus size: 216
10102221 TAAATAAGTT
* * * *
10102231 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10102296 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* *
10102361 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10102426 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10102447 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10102511 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10102574 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10102637 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10102662 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10102727 GACAAGTTCA
Statistics
Matches: 244, Mismatches: 31, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
214 8 0.03
215 173 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10102730 original size:615 final size:610
Alignment explanation
Indices: 10101217--10102788 Score: 1760
Period size: 615 Copynumber: 2.5 Consensus size: 610
10101207 TACATAAGTT
* * *
10101217 TTTGACAAG-TTCAGAAGTTCGTCCAAGAA-CAAGGAGAGACACAACTCTCACGTAAATAAGTTT
1 TTTGACAAGTTTGA-AAGTTCGTCCAAGAACCAA-G-GAGATACAATTCTCACGTAAATAAGTTT
* * * *
10101280 TTAATTCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTTC
63 TTAATT-AAAGACCAAAACTTGTTTACAAAAAGACAAACAATTTAGACCAAA-TATGGGATTTTC
* * *
10101344 CTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGA-TATCTTGAATACTTTCTGGAACCG
126 C-AAGCATGGAATGTTCG-AAAATTTCTAGAAAGAATGGATTATCTTGAATA-TTTCTGGAACCG
* *
10101408 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAA
188 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTC-TCCAAGAACCAAGAGAGAAA
* *
10101471 CAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAA
252 CAATTCTTACGT-AATAAGTTTTTGACAAGTTCGGATGTTCGTCCAAGAAC-AAGAGAGAAACAA
10101536 TTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
315 TTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
10101601 TCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCA
380 TCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCA
10101666 CGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAA
445 CGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAA
*
10101731 TGATGTGATTTCTCGAGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATAC
510 TGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATAC
10101796 TTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
575 TTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
* * * * * *
10101832 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAA-GAGAGTAACAATTCTTATGTACATAAGTTTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGA-T-ACAATTCTCACGTAAATAAGTTTT
* * ** * * * * * * * * *
10101896 TGA--CAAGTTCAGAAGTTCG--TCCAAGAACCAGGAGAGTAACAACTCT-CACGTAAATA-AGT
64 TAATTAAAGACCAAAACTT-GTTTACAA-AA--A-GACA--AACAA-TTTAGAC-CAAATATGGG
* * * * * **
10101955 TTTTAATTCAAGGACGAAAACTGGTTTACAAAAAGACAAACTATT-TAG-ACCAA---ATTATGC
120 ATTT--TCCAAGCATG-GAA-T-G-TT-C-----GA-AAA-T-TTCTAGAAAGAATGGATTAT-C
* * ** * * * * * ** *
10102015 --G-AT-TTCCTGAGCATGGAA-TGT-TAGAA-AAATTGCTAGAAAGAATGGATATCTT-GAATA
169 TTGAATATTTCTG-GAACCGAAGT-TATAAAAGAAATCG-TA-AAAG-TTTGACAAGTTCGGAT-
* ** * * *
10102072 CTT-T-CTGGAACCGAAGTTATA-AAAGAA---AT-CGTAA-AAG--TTTGACAAGTTCGGATGT
228 GTTCTCCAAGAACC-AAG--AGAGAAACAATTCTTACGTAATAAGTTTTTGACAAGTTCGGATGT
* * *
10102127 TCATCCAAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
290 TCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
10102191 CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCA
355 CCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAAGTTCGTTCA
*
10102256 AGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAC
420 AGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTAA
10102321 AAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCA
485 AAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCA
10102386 CAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
550 CAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTTGTGAAAG
10102447 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
*
10102512 ATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTTCCAA
66 A-TTAAAGACCAAAACTTGTTTACAAAAAGACAAACAATTTAGACCAAAT-ATGGGATTTTCCAA
* *
10102577 GCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGT
129 GCATGGAATGTTCGAAA-ATTTCTAGAAAGAATGGATTATCTTGAATA-TTTCTGGAACCGAAGT
10102642 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
192 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTC-TCCAAGAACCAAGAGAGAAACAAT
* * * * *
10102707 TCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCT
256 TCTTACGTA-ATAAGTTTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCT
10102772 CACGTAAATAAGTTTTT
319 CACGTAAATAAGTTTTT
10102789 AATTCAAGGA
Statistics
Matches: 761, Mismatches: 116, Indels: 158
0.74 0.11 0.15
Matches are distributed among these distances:
599 2 0.00
600 6 0.01
601 6 0.01
603 1 0.00
604 5 0.01
605 1 0.00
606 13 0.02
607 20 0.03
608 16 0.02
609 12 0.02
610 3 0.00
611 21 0.03
612 18 0.02
613 12 0.02
614 27 0.04
615 408 0.54
616 11 0.01
617 76 0.10
618 13 0.02
619 7 0.01
620 3 0.00
621 13 0.02
622 17 0.02
623 14 0.02
624 10 0.01
625 7 0.01
626 5 0.01
627 2 0.00
628 7 0.01
629 4 0.01
630 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (610 bp):
TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
ATTAAAGACCAAAACTTGTTTACAAAAAGACAAACAATTTAGACCAAATATGGGATTTTCCAAGC
ATGGAATGTTCGAAAATTTCTAGAAAGAATGGATTATCTTGAATATTTCTGGAACCGAAGTTATA
AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCTCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAATAAGTTTTTGACAAGTTCGGATGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAA
ATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATA
AGTTTTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
TATTAATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTT
CTCGAGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACC
AAAGTTATAAAAGAATTTGTGAAAG
Found at i:10102761 original size:62 final size:62
Alignment explanation
Indices: 10102662--10102788 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10102652 ATCGTAAAAG
* * * * *
10102662 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10102724 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10102786 TTT
1 TTT
10102789 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10103067 original size:62 final size:62
Alignment explanation
Indices: 10102939--10103184 Score: 361
Period size: 62 Copynumber: 4.0 Consensus size: 62
10102929 ATCGTAAAAG
* * * *
10102939 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10102999 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10103061 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10103123 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10103185 ATTAATTAAC
Statistics
Matches: 170, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 27 0.16
61 1 0.01
62 142 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10103443 original size:399 final size:397
Alignment explanation
Indices: 10102662--10103417 Score: 968
Period size: 399 Copynumber: 1.9 Consensus size: 397
10102652 ATCGTAAAAG
* * *
10102662 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10102727 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10102792 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10102857 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * *
10102922 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** *** *
10102987 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAAACAAGAACAAAGAGACAAACAATTCTCACGT
10103052 AAATAAGTT
389 AAATAAGTT
* *
10103061 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10103126 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10103191 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10103253 AGCATGGATTGTTTGGAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * * *
10103317 GTTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10103382 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAAA
10103418 ACTTGTTTAC
Statistics
Matches: 305, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 187 0.61
400 69 0.23
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAAACAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10103501 original size:215 final size:216
Alignment explanation
Indices: 10103123--10103618 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10103113 TAAATAAGTT
* * * *
10103123 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10103188 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10103253 AGCATGGATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10103318 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10103339 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10103403 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10103466 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10103529 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10103554 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10103619 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10103653 original size:62 final size:62
Alignment explanation
Indices: 10103554--10103680 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10103544 ATCGTAAAAG
* * * * *
10103554 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10103616 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10103678 TTT
1 TTT
10103681 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10103955 original size:62 final size:62
Alignment explanation
Indices: 10103831--10104076 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10103821 ATCGTAAAAG
* * * * *
10103831 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10103891 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10103953 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10104015 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10104077 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10104335 original size:399 final size:397
Alignment explanation
Indices: 10103554--10104308 Score: 950
Period size: 399 Copynumber: 1.9 Consensus size: 397
10103544 ATCGTAAAAG
* * *
10103554 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10103619 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10103684 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATATCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
* ** *
10103749 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10103814 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10103879 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10103944 AAATAAGTT
389 AAATAAGTT
*
10103953 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10104018 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * * *
10104083 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGAT-TTCTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATATCCT-G
* * * * *
10104145 AGCAT-GATGTGTTTGGAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAA
193 AGCATGGA-ATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAA
* * * * * *
10104208 AGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACA
255 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACA
10104273 ATTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
319 ATTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10104309 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 46, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 18 0.06
399 183 0.60
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10104393 original size:215 final size:216
Alignment explanation
Indices: 10104015--10104510 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 216
10104005 TAAATAAGTT
* * * *
10104015 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10104080 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10104145 AGCATGATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGATATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10104210 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10104231 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10104295 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10104358 CAAGCATGGA-ATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAAC
129 CAAGCAT-GATATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAAC
*
10104420 CGAAGTTATAAAAGAAATCGTAAAAG
191 CAAAGTTATAAAAGAAATCGTAAAAG
* * * *
10104446 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10104511 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 168 0.70
216 65 0.27
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGATATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10104545 original size:62 final size:62
Alignment explanation
Indices: 10104446--10104572 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10104436 ATCGTAAAAG
* * * * *
10104446 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10104508 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10104570 TTT
1 TTT
10104573 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10104851 original size:62 final size:62
Alignment explanation
Indices: 10104723--10104971 Score: 358
Period size: 62 Copynumber: 4.0 Consensus size: 62
10104713 ATCGTAAAAG
* * * * *
10104723 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10104783 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10104845 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10104907 TTTTACCAGTTTGAAAGTTCGTTCAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10104969 TTT
1 TTT
10104972 AATTCAAGGA
Statistics
Matches: 172, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 27 0.16
61 1 0.01
62 144 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10105392 original size:216 final size:208
Alignment explanation
Indices: 10104921--10105395 Score: 619
Period size: 208 Copynumber: 2.2 Consensus size: 208
10104911 ACCAGTTTGA
* * * *
10104921 AAGTTCGTTCAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCAAGGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * * *
10104986 AACTTGTTTACAAAAAGAAAAACTATTTTACCAAATGATGTGATTTCTCGAGCATGGAATGTTGG
66 AACTTGTTTACAAAAAGAAAAACAATTTGACCAAATGATGGGATTTCTCAAGCATGGAATGTTCG
* *
10105051 AAATTTGCACAAAGAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAATAGTAAAAGT
131 AAATTTGCACAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAATAGTAAAAGT
*
10105116 TTGACAAGTTTGG
196 TTGACAAGTTCGG
* *
10105129 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAA
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* *
10105194 AACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TCCAAGCATGGAATGTT
66 AACTTGTTTACAAAAAGAAAAACAATTT-GACCAAATGATGGGATTTCT-CAAGCATGGAATGTT
* * * * * **
10105258 CGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGTTATAAAAGAAAT
129 CGAAAT-TTGC-ACAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTAT-----AAAT
*
10105323 CGTAAAAGTTTGACAAGTTCGG
187 AGTAAAAGTTTGACAAGTTCGG
* * *
10105345 ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10105396 GACAAGTTCA
Statistics
Matches: 230, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
208 85 0.37
209 35 0.15
210 3 0.01
211 36 0.16
216 71 0.31
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (208 bp):
AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
AACTTGTTTACAAAAAGAAAAACAATTTGACCAAATGATGGGATTTCTCAAGCATGGAATGTTCG
AAATTTGCACAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAATAGTAAAAGT
TTGACAAGTTCGG
Found at i:10105430 original size:62 final size:62
Alignment explanation
Indices: 10105331--10105457 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10105321 ATCGTAAAAG
* * * * *
10105331 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10105393 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10105455 TTT
1 TTT
10105458 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10105732 original size:62 final size:62
Alignment explanation
Indices: 10105608--10105853 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10105598 ATCGTAAAAG
* * * * *
10105608 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10105668 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10105730 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10105792 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10105854 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10106112 original size:399 final size:397
Alignment explanation
Indices: 10105331--10106085 Score: 950
Period size: 399 Copynumber: 1.9 Consensus size: 397
10105321 ATCGTAAAAG
* * *
10105331 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10105396 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10105461 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATATCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
* ** *
10105526 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10105591 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10105656 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10105721 AAATAAGTT
389 AAATAAGTT
*
10105730 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10105795 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * * *
10105860 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGAT-TTCTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATATCCT-G
* * * * *
10105922 AGCAT-GATGTGTTTGGAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAA
193 AGCATGGA-ATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAA
* * * * * *
10105985 AGTTATAAAAGAACTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACA
255 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACA
10106050 ATTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
319 ATTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10106086 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 46, Indels: 17
0.83 0.13 0.05
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 18 0.06
399 183 0.60
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10106170 original size:215 final size:216
Alignment explanation
Indices: 10105792--10106287 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
10105782 TAAATAAGTT
* * * *
10105792 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10105857 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10105922 AGCATGATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10105987 TTATAAAAGAACTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10106008 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10106072 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10106135 CAAGCATGGA-ATGTTCGAAAATTTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCAT-GATATGTTCGAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10106198 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10106223 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10106288 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 34, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 175 0.73
216 65 0.27
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10106322 original size:62 final size:62
Alignment explanation
Indices: 10106223--10106349 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10106213 ATCGTAAAAG
* * * * *
10106223 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10106285 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10106347 TTT
1 TTT
10106350 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10106624 original size:62 final size:62
Alignment explanation
Indices: 10106500--10106745 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10106490 ATCGTAAAAG
* * * * *
10106500 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10106560 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10106622 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10106684 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10106746 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10107004 original size:399 final size:397
Alignment explanation
Indices: 10106223--10106977 Score: 957
Period size: 399 Copynumber: 1.9 Consensus size: 397
10106213 ATCGTAAAAG
* * *
10106223 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10106288 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10106353 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATATCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
* * ** *
10106418 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10106483 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10106548 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10106613 AAATAAGTT
389 AAATAAGTT
* *
10106622 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10106687 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * * *
10106752 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGAT-TTCTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATATCCT-G
* * * * *
10106814 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10106878 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10106943 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10106978 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 16 0.05
399 185 0.61
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATATCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10107062 original size:215 final size:216
Alignment explanation
Indices: 10106684--10107179 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10106674 TAAATAAGTT
* * * *
10106684 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10106749 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10106814 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10106879 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10106900 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10106964 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10107027 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10107090 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10107115 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10107180 GACAAGTTCA
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 8 0.03
215 169 0.71
216 61 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10107214 original size:62 final size:62
Alignment explanation
Indices: 10107115--10107241 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10107105 ATCGTAAAAG
* * * * *
10107115 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10107177 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10107239 TTT
1 TTT
10107242 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10107516 original size:62 final size:62
Alignment explanation
Indices: 10107392--10107637 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10107382 ATCGTAAAAG
* * * * *
10107392 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10107452 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10107514 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10107576 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10107638 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10107896 original size:399 final size:397
Alignment explanation
Indices: 10107115--10107869 Score: 959
Period size: 399 Copynumber: 1.9 Consensus size: 397
10107105 ATCGTAAAAG
* * *
10107115 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10107180 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10107245 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10107310 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10107375 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10107440 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10107505 AAATAAGTT
389 AAATAAGTT
*
10107514 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10107579 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10107644 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10107706 AGCAT-GATGTGTTTGGAAATTTGC-ACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAA
193 AGCATGGA-ATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAA
* * * * * *
10107769 AGTTATAAAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACA
255 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACA
10107834 ATTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
319 ATTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10107870 AACTTGTTTA
Statistics
Matches: 304, Mismatches: 45, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 17 0.06
399 185 0.61
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10107954 original size:215 final size:216
Alignment explanation
Indices: 10107576--10108071 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 216
10107566 TAAATAAGTT
* * * *
10107576 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10107641 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10107706 AGCATGATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAG
131 AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* * *
10107771 TTATAAAAGAATTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10107792 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10107856 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * **
10107919 CAAGCATGGA-ATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAAC
129 CAAGCAT-GATATGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAAC
*
10107981 CGAAGTTATAAAAGAAATCGTAAAAG
191 CAAAGTTATAAAAGAAATCGTAAAAG
* * * *
10108007 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10108072 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 169 0.70
216 71 0.29
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGATATGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10108106 original size:62 final size:62
Alignment explanation
Indices: 10108007--10108133 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10107997 ATCGTAAAAG
* * * * *
10108007 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10108069 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10108131 TTT
1 TTT
10108134 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10108412 original size:62 final size:62
Alignment explanation
Indices: 10108284--10108532 Score: 367
Period size: 62 Copynumber: 4.0 Consensus size: 62
10108274 ATCGTAAAAG
* * * * *
10108284 TTTGACAAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10108344 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10108406 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10108468 TTTTACCAGTTTGGAAGTTCGTACAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10108530 TTT
1 TTT
10108533 AATTCAAGGA
Statistics
Matches: 173, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
60 27 0.16
61 1 0.01
62 145 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10108781 original size:62 final size:63
Alignment explanation
Indices: 10108679--10108926 Score: 360
Period size: 62 Copynumber: 4.0 Consensus size: 63
10108669 ATAGTAAAAG
* * * *
10108679 TTTGACAGGTTCGGAT-GTTCGTCCAAGAACAAAGAGAGAAACAATTCTTACTTAAATAAGTT
1 TTTGACAAGTTCGGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10108741 TTTGACAAGTTCGGATA-TTGGTCCAGGAACCAAGACAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10108803 TTTGACAAGTTTGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10108865 TTTGACAAGTTC-AAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10108927 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
61 2 0.01
62 167 0.99
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (63 bp):
TTTGACAAGTTCGGATAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10109243 original size:215 final size:216
Alignment explanation
Indices: 10108865--10109360 Score: 644
Period size: 215 Copynumber: 2.3 Consensus size: 216
10108855 TAAATAAGTT
* * *
10108865 TTTGACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10108930 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10108995 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
*
10109060 TTATAAAAGAACA-CGTGAAAG
196 TTATAAAAGAA-ATCGTAAAAG
* ** *
10109081 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10109145 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10109208 CAAGCATGGAATGTTTTTAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATG-TTTGAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10109271 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10109296 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10109361 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 2 0.01
215 168 0.70
216 71 0.29
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Done.