Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 42 of 144
Found at i:10109395 original size:62 final size:62
Alignment explanation
Indices: 10109296--10109422 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10109286 ATCGTAAAAG
* * * * *
10109296 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10109358 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10109420 TTT
1 TTT
10109423 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10109673 original size:62 final size:62
Alignment explanation
Indices: 10109574--10109700 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10109564 ATCGTAAAAG
* * * * *
10109574 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10109636 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10109698 TTT
1 TTT
10109701 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10109975 original size:62 final size:62
Alignment explanation
Indices: 10109851--10110099 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
10109841 ATCGTAAAAG
* * * * * * *
10109851 TTTGACCAGTTCGGATGTTCATCCAAGAA-CTA-AGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10109911 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10109973 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10110035 TTTTACAAGTTTGGAAGTTCGTACAAGAACCGAGAGAGAACCAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10110097 TTT
1 TTT
10110100 AATTCAAGGA
Statistics
Matches: 171, Mismatches: 16, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
60 26 0.15
61 1 0.01
62 144 0.84
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10110360 original size:62 final size:62
Alignment explanation
Indices: 10110244--10110490 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10110234 ATAGTAAAAG
* * *
10110244 TTTGACAAGTTCGGATGTTCATCCAAGAA-CAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10110305 TTTGACAAGTTTGGATGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10110367 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10110429 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10110491 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
61 26 0.15
62 148 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10110807 original size:215 final size:216
Alignment explanation
Indices: 10110429--10110924 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
10110419 TAAATAAGTT
* * * *
10110429 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10110494 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10110559 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10110624 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10110645 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10110709 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10110772 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10110835 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10110860 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10110925 GACAAGTTCA
Statistics
Matches: 243, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
214 8 0.03
215 172 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10110959 original size:62 final size:62
Alignment explanation
Indices: 10110860--10110986 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10110850 ATCGTAAAAG
* * * * *
10110860 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10110922 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10110984 TTT
1 TTT
10110987 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10111261 original size:62 final size:62
Alignment explanation
Indices: 10111137--10111382 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10111127 ATCGTAAAAG
* * * * *
10111137 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10111197 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10111259 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10111321 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10111383 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10111641 original size:399 final size:397
Alignment explanation
Indices: 10110860--10111614 Score: 975
Period size: 399 Copynumber: 1.9 Consensus size: 397
10110850 ATCGTAAAAG
* * *
10110860 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10110925 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10110990 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10111055 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10111120 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10111185 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10111250 AAATAAGTT
389 AAATAAGTT
*
10111259 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10111324 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10111389 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10111451 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10111515 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10111580 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10111615 AACTTGTTTA
Statistics
Matches: 305, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 188 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10111699 original size:215 final size:216
Alignment explanation
Indices: 10111321--10111816 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10111311 TAAATAAGTT
* * * *
10111321 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10111386 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10111451 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10111516 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10111537 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10111601 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10111664 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10111727 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10111752 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10111817 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 172 0.71
216 69 0.29
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10111851 original size:62 final size:62
Alignment explanation
Indices: 10111752--10111878 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10111742 ATCGTAAAAG
* * * * *
10111752 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10111814 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10111876 TTT
1 TTT
10111879 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10112153 original size:62 final size:62
Alignment explanation
Indices: 10112029--10112274 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10112019 ATCGTAAAAG
* * * * *
10112029 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10112089 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10112151 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10112213 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10112275 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10112533 original size:399 final size:397
Alignment explanation
Indices: 10111752--10112506 Score: 975
Period size: 399 Copynumber: 1.9 Consensus size: 397
10111742 ATCGTAAAAG
* * *
10111752 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10111817 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10111882 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10111947 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10112012 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10112077 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10112142 AAATAAGTT
389 AAATAAGTT
*
10112151 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10112216 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10112281 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10112343 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10112407 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10112472 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10112507 AACTTGTTTA
Statistics
Matches: 305, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 188 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10112591 original size:215 final size:216
Alignment explanation
Indices: 10112213--10112708 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10112203 TAAATAAGTT
* * * *
10112213 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10112278 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10112343 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10112408 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10112429 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10112493 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10112556 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10112619 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10112644 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10112709 GACAAGTTCA
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 170 0.71
216 67 0.28
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10112743 original size:62 final size:62
Alignment explanation
Indices: 10112644--10112770 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10112634 ATCGTAAAAG
* * * * *
10112644 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10112706 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10112768 TTT
1 TTT
10112771 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10113045 original size:62 final size:62
Alignment explanation
Indices: 10112921--10113166 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10112911 ATCGTAAAAG
* * * * *
10112921 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10112981 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10113043 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10113105 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10113167 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10113425 original size:399 final size:397
Alignment explanation
Indices: 10112644--10113398 Score: 975
Period size: 399 Copynumber: 1.9 Consensus size: 397
10112634 ATCGTAAAAG
* * *
10112644 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10112709 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10112774 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10112839 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10112904 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10112969 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10113034 AAATAAGTT
389 AAATAAGTT
*
10113043 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10113108 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10113173 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10113235 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10113299 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10113364 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10113399 AACTTGTTTA
Statistics
Matches: 305, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 188 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10113483 original size:215 final size:216
Alignment explanation
Indices: 10113105--10113600 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10113095 TAAATAAGTT
* * * *
10113105 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10113170 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10113235 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10113300 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10113321 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10113385 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10113448 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10113511 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10113536 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10113601 GACAAGTTCA
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 170 0.71
216 67 0.28
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10113635 original size:62 final size:62
Alignment explanation
Indices: 10113536--10113662 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10113526 ATCGTAAAAG
* * * * *
10113536 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10113598 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10113660 TTT
1 TTT
10113663 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10113937 original size:62 final size:62
Alignment explanation
Indices: 10113813--10114058 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10113803 ATCGTAAAAG
* * * * *
10113813 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10113873 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10113935 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10113997 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10114059 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10114317 original size:399 final size:397
Alignment explanation
Indices: 10113536--10114290 Score: 957
Period size: 399 Copynumber: 1.9 Consensus size: 397
10113526 ATCGTAAAAG
* * *
10113536 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10113601 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10113666 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10113731 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10113796 AAAAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAAAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10113861 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10113926 AAATAAGTT
389 AAATAAGTT
* *
10113935 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10114000 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10114065 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10114127 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * * *
10114191 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAAAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10114256 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10114291 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 187 0.62
400 67 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAAAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10114375 original size:215 final size:216
Alignment explanation
Indices: 10113997--10114492 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10113987 TAAATAAGTT
* * * *
10113997 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10114062 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10114127 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10114192 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10114213 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10114277 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10114340 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10114403 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * * * *
10114428 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10114493 GACAAGTTCA
Statistics
Matches: 240, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 170 0.71
216 62 0.26
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10114525 original size:62 final size:62
Alignment explanation
Indices: 10114428--10114554 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10114418 ATCGTAAAAG
* * * * *
10114428 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
* *
10114490 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
10114552 TTT
1 TTT
10114555 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
Found at i:10114829 original size:62 final size:62
Alignment explanation
Indices: 10114705--10114950 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10114695 ATCGTAAAAG
* * * * *
10114705 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10114765 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10114827 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10114889 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10114951 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10115209 original size:399 final size:397
Alignment explanation
Indices: 10114428--10115182 Score: 964
Period size: 399 Copynumber: 1.9 Consensus size: 397
10114418 ATCGTAAAAG
* * * *
10114428 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * * *
10114493 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10114558 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10114623 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10114688 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10114753 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10114818 AAATAAGTT
389 AAATAAGTT
* *
10114827 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * *
10114892 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *** * *
10114957 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10115020 GCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * * *
10115084 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAAT
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAAT
10115149 TCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
321 TCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10115183 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 48, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 191 0.63
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10115267 original size:215 final size:216
Alignment explanation
Indices: 10114889--10115384 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
10114879 TAAATAAGTT
* * * *
10114889 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10114954 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10115019 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10115084 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10115105 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10115169 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10115232 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10115295 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10115320 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10115385 GACAAGTTCA
Statistics
Matches: 239, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 171 0.72
216 67 0.28
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10115419 original size:62 final size:62
Alignment explanation
Indices: 10115320--10115446 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10115310 ATCGTAAAAG
* * * * *
10115320 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10115382 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10115444 TTT
1 TTT
10115447 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10115721 original size:62 final size:62
Alignment explanation
Indices: 10115597--10115842 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10115587 ATCGTAAAAG
* * * * *
10115597 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10115657 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10115719 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10115781 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10115843 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10116101 original size:399 final size:397
Alignment explanation
Indices: 10115320--10116074 Score: 966
Period size: 399 Copynumber: 1.9 Consensus size: 397
10115310 ATCGTAAAAG
* * *
10115320 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10115385 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10115450 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10115515 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10115580 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10115645 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10115710 AAATAAGTT
389 AAATAAGTT
* *
10115719 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10115784 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10115849 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10115911 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10115975 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10116040 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10116075 AACTTGTTTA
Statistics
Matches: 304, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 187 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10116159 original size:215 final size:216
Alignment explanation
Indices: 10115781--10116276 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10115771 TAAATAAGTT
* * * *
10115781 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10115846 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10115911 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10115976 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10115997 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10116061 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10116124 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10116187 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10116212 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10116277 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10116311 original size:62 final size:61
Alignment explanation
Indices: 10116212--10116337 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 61
10116202 ATCGTAAAAG
* * * * *
10116212 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AACAACTCTCACGTAAATAAGTT
*
10116274 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
10116335 TTT
1 TTT
10116338 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 23 0.40
62 35 0.60
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
Found at i:10116612 original size:62 final size:62
Alignment explanation
Indices: 10116488--10116733 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10116478 ATCGTAAAAG
* * * * *
10116488 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10116548 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10116610 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10116672 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10116734 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10117050 original size:215 final size:216
Alignment explanation
Indices: 10116672--10117167 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10116662 TAAATAAGTT
* * * *
10116672 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10116737 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10116802 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10116867 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10116888 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10116952 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10117015 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10117078 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10117103 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10117168 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10117143 original size:891 final size:891
Alignment explanation
Indices: 10102109--10129218 Score: 44448
Period size: 892 Copynumber: 30.2 Consensus size: 891
10102099 ATCGTAAAAG
* * * * *
10102109 TTTGACAAGTTCGGATGTTCATCCAAGAAC-TA-AGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10102172 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10102237 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10102302 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
* *
10102367 GAATGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* *
10102432 AAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10102497 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10102562 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10102627 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10102692 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10102757 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10102822 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10102887 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
*
10102952 GATGTTCATCCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
*
10102999 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10103064 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10103129 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10103194 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
** *
10103259 GATTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* *
10103324 AAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10103389 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10103454 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10103519 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10103584 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10103649 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
*
10103714 AAACTATTTAGACCAAATTATGCGATATCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10103779 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10103844 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10103891 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10103956 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10104021 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10104086 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCAT-
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
** *
10104150 GATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATA
261 GA-AAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
* *
10104215 AAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
325 AAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
10104280 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
390 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
10104345 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAG
455 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAG
10104410 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
520 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
10104475 CCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
585 CCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
10104540 GGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
650 GGAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
10104605 CAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
714 CAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
10104670 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
779 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
*
10104735 GGATGTTCATCCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
844 GGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
*
10104783 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10104848 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTTAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
* ** * * * *
10104913 CAGTTTGAAAGTTCGTTCAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-A
* * ***
10104978 A-GGACCAAAACTTGTTTACAAAAA-GAAAAACTATTTT-ACCAAATGATGTGATTTCTCGAGCA
195 ACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCA
* *
10105040 TGGAATG-TTGGAAATTTGCACAAA-GAATGTATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
259 TGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10105103 ---A-AA-TAGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT
324 AAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCT
10105163 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCA
388 CACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCA
10105228 AATGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAAT
453 AATGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAAT
10105293 AGTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAG
518 AGTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAG
10105358 AACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
583 AACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAAC
10105423 CAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAA
648 CAGGAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAA
*
10105488 GACAAACTATTTAGACCAAATTATGCGATATCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAA
712 GACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAA
10105553 GAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGT
777 GAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGT
10105618 TCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
842 TCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10105668 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10105733 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10105798 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10105863 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCAT-
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
** *
10105927 GATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATA
261 GA-AAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
*
10105992 AAAGAACTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
325 AAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
10106057 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
390 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
10106122 TGATGGGATTTTCCAAGCATGGAATGTTCGAAA-ATTTTCTAGAAGGAATGGATTATCTTGAATA
455 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATA-TTTCTAGAAGGAATGGATTATCTTGAATA
10106186 GTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
519 GTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
10106251 ACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACC
584 ACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACC
10106316 AGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAG
649 AGGAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAG
*
10106381 ACAAACTATTTAGACCAAATTATGCGATATCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAG
713 ACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAG
10106446 AATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTT
778 AATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTT
10106511 CGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
843 CGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10106560 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10106625 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10106690 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10106755 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10106820 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10106885 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10106950 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10107015 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10107080 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10107145 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10107210 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10107275 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10107340 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10107405 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10107452 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10107517 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10107582 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10107647 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCAT-
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
** *
10107711 GATGTGTTTGGAAATTTGCACAAAGGAATGTATCATCTTGAATACTTTAAGGAACCAAAGTTATA
261 GA-AAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
* *
10107776 AAAGAATTTGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
325 AAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
10107841 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
390 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
*
10107906 TGATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAG
455 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAG
10107971 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
520 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
10108036 CCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
585 CCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
10108101 GGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
650 GGAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
*
10108166 CAAACTATTTAGACCAAATTATGCGATATCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
714 CAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
10108231 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
779 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
*
10108296 GGATGTTCATCCAAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
844 GGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
*
10108344 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10108409 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTTAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
* *** * * * * *
10108474 CAGTTTGGAAGTTCGTACAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-A
* * ** * *
10108539 A-GGACCAAAACTTGTTTACAAAAA-GACAAACTATTTAT-ACCAAATTATGCGATTTCTCGAGC
195 ACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTT-TGACCAAATGATGTGATTTCTCGAGC
* * * * * * *
10108601 ATGGAATG-TTCGAAAGATTGCTCGAAA-GAATGGATCATCTTGAATACTTTCAA-GAACCGAAG
258 ATGGAAAGTTTGGAAA-TTTGCAC-AAAGGAATGTATCGTCTTGAATACTTT-AAGGAACCAAAG
* * * * * * * *
10108663 TTAT---A-AA-TAGTAAAAGTTTGACAGGTTCGGATGTTCGTCCAAGAACAAAGAGAGAAACAA
320 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAA
* * * * * ** * * * *
10108723 TTCTTACTTAAATAAGTTTTTGA---CAAGTTCGGATA-TTG-GTCCAGGAACCAAGACAGAAAC
384 TTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAACTTGTTTACA--AA--ATGAC--AAAC
* * * * * ** * * **
10108783 AATTCT-TACGTAAAT-A--AGTTTTTGACAAGTTTGGAA-GTTCG------TCCAAGAACCAA-
442 AATT-TAGAC-CAAATGATGGGATTTT-CCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAAT
* *** *
10108836 -GA-GA----GAA-A-CAATT----CTC-ACG-TA-AATAAG---T--T-----TTTGACAAGTT
504 GGATTATCTTGAATAGTTTTTGGAAC-CGAAGTTATAA-AAGAAATCGTAAAAGTTTGACAAGTT
** * * *
10108876 CAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA-ACTAAGTTATTAATTA-ACAG
567 CGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACA-TAAGTT-TT--TGACA-AG
* * * ** **** * * * * * * * *
10108939 TCCAAAACTT-GTTTACA-AA--ATTTCA-AACTATTTTGAC-CAAATGATGTGATTTCTCGA-G
627 TTCAGAAGTTCGTCCA-AGAACCAGGAGAGAACAACTCTCACGTAAAT-AAGT--TTT-T-AATT
* **** *
10108997 CATGGA--ATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACT-TTAAGGAACCAAA
686 CAAGGACCAAAACTGG---TTT--ACAAA--AA-G-A----C---AA-ACTATTTA-G-ACCAAA
** *** * * * * * ** * * ** *
10109059 GTTATAAAAGAACACGTGAAAG-TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACA
732 -TTAT--GCGATTTCCTG--AGCATGGA-ATGTTAGAAA-AAT-TGCTAGAAAGAATG-GAT---
* * * ** * * * * * * *
10109123 ATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACA-AAAT-GACAAACAATT
785 A-TCT----TGAAT-A---CTT--TCTGGA-ACC-GAAGTT-ATAAAAGAAATCG-TAAA-AGTT
* * * * *** **
10109186 TAGACCAAATGATGGGAT-TT--TCCAAGCA-TGGAATGTTTTTAA-AATT-TCTA-G-AAGGAA
834 T-GA-C-AA-GTTCGGATGTTCATCCCAGAACT--AA-G--AGAAACAATTCT-TACGTAAATAA
10109243 ---
889 GTT
* ** * ** * * * *
10109243 -TGGATTA-TCTTGAATAGTT--T-TTGGAACCGAAGTTATA-AAAGAA--AT--CGT-AA-AAG
1 TTTGACAAGT-TTGGAT-GTTCGTCTAAGAA-CAAAG--AGAGAAACAATTCTCACGTAAATAAG
* * * * *
10109296 --TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTT
61 TTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTT
* * * * * * *
10109359 TTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTA
126 TTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTA
* * * ** * * *
10109424 ATTCAA-GGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATTATGCGATTTC-C
191 ATT-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTC
* * * * * * ** * ** *
10109486 TGAGCATGGAATGTTAGAAAAATTGCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACCG
254 -GAGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCA
* * * * * *
10109550 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAA
317 AAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATA
* * * * ** * *
10109615 CAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAA
381 CAATTCTCACGTAAATAAGTTTTT---AA-TTTA-AA----GACCAA-AA-C--TTG-TTTACAA
** * * * * ****
10109680 CTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAA--ACT-GG-TTTACAAAAAGACAAACTAT
432 -AATGAC--AAACAA-----T--TT--A-GACCAAATGA-TGGGATTTTC--CAAG-CATGGAAT
*
10109741 -TTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGACAAATTGCTAGAAAGAATGGATA
480 GTT----CGAA--AT---ATTT-CT----A--GAA-G---G---AA----T-G---G-AT---TA
* * *
10109805 TCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACCAGTTCGGATGTT
510 TCTTGAATAGTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTT
* * * * ** *
10109870 CATCCAAGAA-CTA-AGAGAAATAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGT
575 CGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGT
* * * * ***** ** *
10109933 CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA--CAAGTTTGGAAGTTCGTC
640 CCAAGAACCAGGAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGT-
** * * * * * *** * * ** *
10109996 CAAGAACCAAGAGAGAAACAATTCTCATG--TAAA-TAAGTTTTTTAC-AAGTTTGGAA-GTTCG
703 TTACAA--AA-AGACAAACTATT-T-A-GACCAAATTATGCGATTTCCTGAGCATGGAATGTTAG
* * * *** * * * * * *
10110056 TACAAGAA--CCGAGAGAGAACCAACTCTCACGTAAATAAGTTTTTAATTCAAGG-ACCAAAACT
762 -A-AA-AATTGCTAGAAAGAATGGA-TAT--CTTGAAT-A----CT--TTC-TGGAACC-GAA--
* * **
10110118 GGTT-TACAAA-AAGA-C--AAACTA-TTTAGACCAAATTATGCGAT-TTC-TGAGCATGGAA-T
810 -GTTATA-AAAGAA-ATCGTAAA--AGTTT-GA-CAAGTT-CG-GATGTTCAT-CCCA--GAACT
*** *
10110174 GTTAGAAA-AATTGC-TA-G-AAAGAA---
863 AAGAGAAACAATT-CTTACGTAAATAAGTT
* * * * * * ** * *
10110197 -TGGA-TA-TCTTGAATACTT--TCT-GGAAC--CGA-AGTTATAA--AT-A-GT-AA-AAG--T
1 TTTGACAAGT-TTGGAT-GTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * *
10110245 TTGACAAGTTCGGATGTTCATCCAAGAA-CAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTG
64 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTG
*** * *
10110309 ACAAGTTTGGATGTTCG-TCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-T-TT--T
129 ACAAGTTCAAAAGTTCGTTC-AAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
* **** * ** **** * * * * * *
10110369 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT-AAGT-TTTT
193 TAAC-AGTCCAAAACTT-GTTTAA-AA--AA-TTTCAAACTATTTTGAC-CAAATGATGTGATTT
** * * ** * ** * *** ** *
10110432 GACAAG-TTCAAAAGTTCGTTCAA---GAACCAAGAGAGAAACAATTC-TCACGTAACTAAGTTA
251 CTCGAGCATGGAAAGTTTG-GAAATTTGCA-CAA-AG-GAATGTA-TCGTCTTG-AA-T-A-CT-
** * * * * * * ** *
10110492 TTAATTAACAGTCCAAAACTTGTT-TACAA-AA-T-TTCAAACTATTTTGACCAAATGATGTGAT
306 TTAA-GGA-A--CC-AAA---GTTATAAAAGAACTCGT-GAA--AGTTTGA-CAAGT-TTGAAAG
* * * *
10110553 TTC-T-C--G-AGCATGGAAAGTTTGGA-AATT-TGCAC--AAAGGAATGTATCGTCTTGAATAC
358 TTCGTCCAAGAACCAAGG--AG-AT--ACAATTCT-CACGTAAA-TAA-GT-T--T-TT--A-A-
* * ** * * * **
10110609 TTTAAGGAACC-AAA---GTTATAAAAGAACTCG-TGAA-AGTTT-GA-CAAGT-TTGAAAGTTC
407 TTTAAAG-ACCAAAACTTGTT-TACAA-AA-T-GACAAACAATTTAGACCAAATGATGGGA-TT-
* * * * *** * ** *
10110665 GTCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA-ATTTAA-AGACCAAAACTT
465 TTCCAAG---CATGGA-AT----GT-T--CG-AAAT-A-TTTCTAGAAGGAATGGA--TTATCTT
** ***** * * * * * ** ** * * * *
10110728 GTTTACAAAATGACAAAC-AATTTAGACCAAATGATGGGATTTTCCAAGCATGGA-ATGTTCGAA
514 GAATAGTTTTTG-GAACCGAAGTTATA--AAA-GA---AATCGTAAAAG-TTTGACAAGTTCG-G
* *** * * * * * * * * *
10110791 ATATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAGTTATAAAAGAAATCGTA
570 AT-GTTC--G-TCCAA--GA--A-C--CAAGAG-----AGAAAC-AA-TTCT-TACG-TA-CATA
*** * * * * * *
10110856 AAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGT
614 AGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAG-AACAACTCTCACGTAAATAAGT
*
10110921 TTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTT
678 TTTT---AA-TTC--AA----G-----G-ACC-------A-A-AA--CT---G-------GTTTA
* * * * *
10110986 TAATTCAAGGACCAAAACTGGTTTACAAAAAGA-CAAACTATTTAGACCAAATTATGCGATTTCC
706 CAA---AAAGA-C-AAACT-ATTT------AGACCAAA-T-TAT-GC-----------GATTTCC
10111050 TGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAA
745 TGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAA
10111115 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAAT
810 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAAT
10111180 TCTTACGTAAATAAGTT
875 TCTTACGTAAATAAGTT
10111197 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10111262 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10111327 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10111392 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10111457 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10111522 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10111587 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10111652 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10111717 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10111782 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10111847 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10111912 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10111977 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10112042 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10112089 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10112154 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10112219 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10112284 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10112349 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10112414 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10112479 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10112544 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10112609 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10112674 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10112739 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10112804 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10112869 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10112934 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10112981 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10113046 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10113111 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10113176 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10113241 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10113306 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10113371 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10113436 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10113501 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10113566 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10113631 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10113696 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
*
10113761 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAAAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10113826 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10113873 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10113938 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10114003 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10114068 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10114133 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10114198 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10114263 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10114328 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10114393 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
* *
10114458 CAGGAGAGAAACAATTATTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10114523 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10114588 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10114653 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10114718 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10114765 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10114830 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10114895 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10114960 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10115025 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10115090 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10115155 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10115220 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10115285 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10115350 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10115415 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10115480 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10115545 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10115610 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10115657 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10115722 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10115787 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10115852 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10115917 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10115982 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10116047 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10116112 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10116177 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10116242 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10116307 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
651 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
10116372 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
716 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
10116437 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
781 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
10116502 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
846 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10116548 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10116613 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10116678 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10116743 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10116808 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10116873 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10116938 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10117003 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10117068 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10117133 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10117198 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10117263 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10117328 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10117393 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10117440 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10117505 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10117570 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10117635 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10117700 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10117765 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10117830 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10117895 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10117960 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10118025 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACC--
10118090 GAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAA
649 -AGGAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAA
10118155 GACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAA
712 GACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAA
10118220 GAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGT
777 GAATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGT
10118285 TCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
842 TCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10118335 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10118400 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10118465 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10118530 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10118595 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10118660 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10118725 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10118790 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10118855 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10118920 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10118985 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
651 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
10119050 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
716 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
10119115 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
781 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
10119180 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
846 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10119226 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10119291 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10119356 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10119421 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10119486 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10119551 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10119616 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10119681 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10119746 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10119811 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10119876 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
651 GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
10119941 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
716 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
10120006 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
781 GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
10120071 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
846 ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10120117 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10120182 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10120247 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10120312 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10120377 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10120442 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10120507 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10120572 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10120637 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
*
10120702 CAGGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10120767 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10120832 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10120897 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10120962 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10121009 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10121074 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10121139 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10121204 CAGTCCAAAACTTGTTT-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10121268 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10121333 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10121398 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10121463 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10121528 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10121593 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10121658 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10121723 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10121788 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10121853 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10121900 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10121965 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10122030 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10122095 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
*
10122160 GAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10122225 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10122290 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
10122355 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10122420 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
* *
10122485 CAGGAGAGAAACAATTATTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10122550 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10122615 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10122680 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10122745 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10122792 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10122857 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10122922 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10122987 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10123052 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10123117 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10123182 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10123247 GATGGGATTTTCCAAGCATGGAATGTTC-AAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10123311 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10123376 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10123441 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10123506 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10123571 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10123636 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10123683 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10123748 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10123813 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10123878 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10123943 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10124008 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10124073 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10124138 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10124203 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
*
10124268 CAGGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10124333 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10124398 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10124463 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10124528 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10124575 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10124640 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10124705 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10124770 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10124835 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10124900 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10124965 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10125030 GATGGGATTTTCCAAGCATGGAATGTTC-AAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10125094 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10125159 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10125224 GAGAGACACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAGA-ACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10125289 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10125354 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10125419 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10125466 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10125531 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10125596 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10125661 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCAT-
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
**
10125725 GATGTGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
261 GA-AAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATA
10125790 AAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
325 AAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCA
10125855 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
390 CGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAA
10125920 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAG
455 TGATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAG
10125985 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
520 TTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA
*
10126050 CCAGGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
585 CCAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCA
10126115 GGAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
650 GGAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGA
10126180 CAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
714 CAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGA
10126245 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
779 ATGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
10126310 GGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
844 GGATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10126358 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10126423 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
10126488 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
10126553 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10126618 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
10126683 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10126748 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10126813 GATGGGATTTTCCAAGCATGGAATGTTC-AAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10126877 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10126942 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10127007 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10127072 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10127137 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10127202 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10127249 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10127314 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
*
10127379 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10127444 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10127509 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10127574 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10127639 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
*
10127704 GATGGGATTTTCCAAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10127769 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
* *
10127834 CAGGAGAGAAACAATTATTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10127899 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
10127964 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
10128029 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
10128094 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
10128141 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10128206 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
*
10128271 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATTAATTAA
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
*
10128336 CAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
10128401 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
261 GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
**
10128466 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAATTCTCAC
326 AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
10128531 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
391 GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
* *
10128596 GATGGGATTTTCCAAGCATGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGT
456 GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
10128661 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
521 TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
10128726 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
586 CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
10128791 GAGAGTAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
651 GAGAG-AACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGAC
*
10128856 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGACAAATTGCTAGAAAGAA
715 AAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAA
*
10128921 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACCAGTTCG
780 TGGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
** *
10128986 GATGTTCATCGAAGAACTAAGAGAAATAATTCTTACGTAAATAAGTT
845 GATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
*
10129033 TTTGACAAGTTTGGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10129098 GACCAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
** * * * *
10129163 AAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
131 AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
10129219 TTTGAAAAGT
Statistics
Matches: 24875, Mismatches: 803, Indels: 1082
0.93 0.03 0.04
Matches are distributed among these distances:
855 4 0.00
856 10 0.00
857 6 0.00
858 61 0.00
859 8 0.00
860 10 0.00
861 12 0.00
862 5 0.00
863 1 0.00
864 2 0.00
865 2 0.00
866 1 0.00
867 2 0.00
868 5 0.00
869 3 0.00
870 2 0.00
873 7 0.00
874 5 0.00
875 9 0.00
876 4 0.00
878 5 0.00
879 4 0.00
880 12 0.00
881 1 0.00
882 17 0.00
883 3 0.00
884 49 0.00
885 733 0.03
886 35 0.00
887 56 0.00
888 81 0.00
889 50 0.00
890 282 0.01
891 6255 0.25
892 14570 0.59
893 74 0.00
894 5 0.00
895 963 0.04
896 4 0.00
897 9 0.00
898 19 0.00
899 16 0.00
900 8 0.00
901 9 0.00
902 7 0.00
903 10 0.00
904 14 0.00
905 6 0.00
906 7 0.00
907 2 0.00
910 7 0.00
911 5 0.00
912 5 0.00
913 3 0.00
914 4 0.00
915 1 0.00
916 1 0.00
917 7 0.00
918 1 0.00
919 22 0.00
920 10 0.00
921 7 0.00
922 2 0.00
924 1 0.00
925 12 0.00
926 5 0.00
927 5 0.00
929 2 0.00
930 5 0.00
931 1 0.00
932 2 0.00
934 1 0.00
936 1 0.00
937 2 0.00
938 8 0.00
939 5 0.00
940 4 0.00
941 3 0.00
942 5 0.00
943 9 0.00
944 12 0.00
945 14 0.00
946 8 0.00
947 97 0.00
948 61 0.00
949 82 0.00
950 12 0.00
951 6 0.00
952 7 0.00
953 23 0.00
954 84 0.00
955 33 0.00
956 11 0.00
957 18 0.00
958 19 0.00
959 15 0.00
960 23 0.00
961 20 0.00
962 8 0.00
963 7 0.00
964 17 0.00
965 1 0.00
966 1 0.00
967 1 0.00
968 2 0.00
969 5 0.00
970 6 0.00
971 7 0.00
972 1 0.00
973 2 0.00
974 4 0.00
975 9 0.00
976 18 0.00
977 2 0.00
978 2 0.00
979 8 0.00
980 5 0.00
981 17 0.00
982 28 0.00
983 10 0.00
984 34 0.00
985 5 0.00
986 36 0.00
987 9 0.00
988 6 0.00
989 5 0.00
990 2 0.00
992 2 0.00
993 13 0.00
994 26 0.00
995 19 0.00
996 27 0.00
997 23 0.00
998 9 0.00
999 8 0.00
1000 6 0.00
1001 13 0.00
1002 24 0.00
1003 19 0.00
1004 11 0.00
1005 7 0.00
1006 11 0.00
1007 10 0.00
1008 3 0.00
1009 10 0.00
1010 22 0.00
1011 7 0.00
1012 3 0.00
1013 8 0.00
1014 17 0.00
1015 43 0.00
1016 93 0.00
1017 8 0.00
1018 8 0.00
1019 7 0.00
1020 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (891 bp):
TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
AAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
CAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
GAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
AAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCTCAC
GTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAAT
GATGGGATTTTCCAAGCATGGAATGTTCGAAATATTTCTAGAAGGAATGGATTATCTTGAATAGT
TTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
CAAGAGAGAAACAATTCTTACGTACATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAG
GAGAGAACAACTCTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTGGTTTACAAAAAGACA
AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTAGAAAAATTGCTAGAAAGAAT
GGATATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
ATGTTCATCCCAGAACTAAGAGAAACAATTCTTACGTAAATAAGTT
Found at i:10117202 original size:62 final size:62
Alignment explanation
Indices: 10117103--10117229 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10117093 ATCGTAAAAG
* * * * *
10117103 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10117165 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10117227 TTT
1 TTT
10117230 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10117504 original size:62 final size:62
Alignment explanation
Indices: 10117380--10117625 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10117370 ATCGTAAAAG
* * * * *
10117380 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10117440 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10117502 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10117564 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10117626 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10117884 original size:399 final size:397
Alignment explanation
Indices: 10117103--10117857 Score: 975
Period size: 399 Copynumber: 1.9 Consensus size: 397
10117093 ATCGTAAAAG
* * *
10117103 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10117168 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10117233 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10117298 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10117363 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10117428 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10117493 AAATAAGTT
389 AAATAAGTT
*
10117502 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10117567 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10117632 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10117694 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10117758 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10117823 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10117858 AACTTGTTTA
Statistics
Matches: 305, Mismatches: 45, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 188 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10117942 original size:215 final size:216
Alignment explanation
Indices: 10117564--10118059 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10117554 TAAATAAGTT
* * * *
10117564 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10117629 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10117694 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10117759 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10117780 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10117844 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10117907 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10117970 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10117995 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10118060 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10118399 original size:62 final size:62
Alignment explanation
Indices: 10118275--10118520 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10118265 ATCGTAAAAG
* * * * *
10118275 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10118335 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10118397 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10118459 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10118521 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10118837 original size:215 final size:216
Alignment explanation
Indices: 10118459--10118954 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10118449 TAAATAAGTT
* * * *
10118459 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10118524 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10118589 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10118654 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10118675 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10118739 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10118802 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10118865 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10118890 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10118955 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 63 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10118989 original size:62 final size:61
Alignment explanation
Indices: 10118890--10119015 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 61
10118880 ATCGTAAAAG
* * * * *
10118890 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AACAACTCTCACGTAAATAAGTT
*
10118952 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
10119013 TTT
1 TTT
10119016 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 23 0.40
62 35 0.60
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
Found at i:10119290 original size:62 final size:62
Alignment explanation
Indices: 10119166--10119411 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10119156 ATCGTAAAAG
* * * * *
10119166 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10119226 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10119288 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10119350 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10119412 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10119728 original size:215 final size:216
Alignment explanation
Indices: 10119350--10119845 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 216
10119340 TAAATAAGTT
* * * *
10119350 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10119415 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10119480 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10119545 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10119566 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10119630 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10119693 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10119756 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10119781 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10119846 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 172 0.71
216 69 0.29
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10119880 original size:62 final size:61
Alignment explanation
Indices: 10119781--10119906 Score: 189
Period size: 62 Copynumber: 2.0 Consensus size: 61
10119771 ATCGTAAAAG
* * * * *
10119781 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAG-AACAACTCTCACGTAAATAAGTT
*
10119843 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
10119904 TTT
1 TTT
10119907 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
61 23 0.40
62 35 0.60
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAACAACTCTCACGTAAATAAGTT
Found at i:10120181 original size:62 final size:62
Alignment explanation
Indices: 10120057--10120302 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10120047 ATCGTAAAAG
* * * * *
10120057 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10120117 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10120179 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10120241 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10120303 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10120619 original size:215 final size:216
Alignment explanation
Indices: 10120241--10120736 Score: 615
Period size: 215 Copynumber: 2.3 Consensus size: 216
10120231 TAAATAAGTT
* * * *
10120241 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10120306 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10120371 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10120436 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10120457 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10120521 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * * **
10120584 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10120647 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * * *
10120672 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10120737 GACAAGTTCA
Statistics
Matches: 237, Mismatches: 38, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
214 8 0.03
215 168 0.71
216 61 0.26
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10120769 original size:62 final size:62
Alignment explanation
Indices: 10120672--10120798 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10120662 ATCGTAAAAG
* * * * *
10120672 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
*
10120734 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
10120796 TTT
1 TTT
10120799 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10121073 original size:62 final size:62
Alignment explanation
Indices: 10120949--10121194 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10120939 ATCGTAAAAG
* * * * *
10120949 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10121009 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10121071 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10121133 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10121195 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10121510 original size:215 final size:215
Alignment explanation
Indices: 10121133--10121627 Score: 640
Period size: 215 Copynumber: 2.3 Consensus size: 215
10121123 TAAATAAGTT
* * * *
10121133 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10121198 AATTAACAGTCCAAAACTTGTTTAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCGA
66 AATTAACAGACCAAAACTTGTTTAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCAA
* * * *
10121263 GCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAGT
131 GCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
* *
10121328 TATAAAAGAACTCGTGAAAG
196 TATAAAAGAAATCGTAAAAG
* *
10121348 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10121412 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTA-AAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10121475 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
128 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10121538 GAAGTTATAAAAGAAATCGTAAAAG
191 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10121563 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10121628 GACAAGTTCA
Statistics
Matches: 242, Mismatches: 32, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
214 46 0.19
215 162 0.67
216 34 0.14
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (215 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCAA
GCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10121662 original size:62 final size:62
Alignment explanation
Indices: 10121563--10121689 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10121553 ATCGTAAAAG
* * * * *
10121563 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10121625 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10121687 TTT
1 TTT
10121690 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10121964 original size:62 final size:62
Alignment explanation
Indices: 10121840--10122085 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10121830 ATCGTAAAAG
* * * * *
10121840 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10121900 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10121962 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10122024 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10122086 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10122344 original size:399 final size:397
Alignment explanation
Indices: 10121563--10122317 Score: 984
Period size: 399 Copynumber: 1.9 Consensus size: 397
10121553 ATCGTAAAAG
* * *
10121563 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10121628 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10121693 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10121758 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10121823 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10121888 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10121953 AAATAAGTT
389 AAATAAGTT
*
10121962 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10122027 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10122092 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10122154 AGCATGGAATGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10122218 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10122283 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10122318 AACTTGTTTA
Statistics
Matches: 306, Mismatches: 44, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 189 0.62
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10122402 original size:215 final size:216
Alignment explanation
Indices: 10122024--10122519 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
10122014 TAAATAAGTT
* * * *
10122024 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10122089 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * *
10122154 AGCATGGAATGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10122219 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10122240 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10122304 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10122367 CAAGCATGGAATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10122430 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * * * *
10122455 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10122520 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 34, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 171 0.71
216 62 0.26
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10122552 original size:62 final size:62
Alignment explanation
Indices: 10122455--10122581 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10122445 ATCGTAAAAG
* * * * *
10122455 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
* *
10122517 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
10122579 TTT
1 TTT
10122582 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
Found at i:10122856 original size:62 final size:62
Alignment explanation
Indices: 10122732--10122977 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10122722 ATCGTAAAAG
* * * * *
10122732 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10122792 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10122854 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10122916 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10122978 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10123236 original size:399 final size:397
Alignment explanation
Indices: 10122455--10123209 Score: 948
Period size: 399 Copynumber: 1.9 Consensus size: 397
10122445 ATCGTAAAAG
* * * *
10122455 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * * *
10122520 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10122585 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10122650 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10122715 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10122780 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10122845 AAATAAGTT
389 AAATAAGTT
* * *
10122854 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * *
10122919 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10122984 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10123046 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10123110 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10123175 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10123210 AACTTGTTTA
Statistics
Matches: 302, Mismatches: 48, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 185 0.61
400 68 0.23
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10123368 original size:214 final size:216
Alignment explanation
Indices: 10122916--10123410 Score: 640
Period size: 215 Copynumber: 2.3 Consensus size: 216
10122906 TAAATAAGTT
* * * *
10122916 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10122981 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
*** * *
10123046 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10123111 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10123132 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10123196 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * ** *
10123259 CAAGCATGGAATGTTCAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACCG
129 CAAGCATGGAAAGTTCAAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCA
10123322 AAGTTATAAAAGAAATCGTAAAAG
193 AAGTTATAAAAGAAATCGTAAAAG
* * * *
10123346 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10123411 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 34, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
214 83 0.34
215 123 0.51
216 35 0.15
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10123445 original size:62 final size:62
Alignment explanation
Indices: 10123346--10123472 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10123336 ATCGTAAAAG
* * * * *
10123346 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10123408 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10123470 TTT
1 TTT
10123473 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10123747 original size:62 final size:62
Alignment explanation
Indices: 10123623--10123868 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10123613 ATCGTAAAAG
* * * * *
10123623 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10123683 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10123745 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10123807 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10123869 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10124127 original size:399 final size:397
Alignment explanation
Indices: 10123346--10124100 Score: 973
Period size: 399 Copynumber: 1.9 Consensus size: 397
10123336 ATCGTAAAAG
* * *
10123346 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10123411 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10123476 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10123541 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10123606 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10123671 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10123736 AAATAAGTT
389 AAATAAGTT
* *
10123745 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10123810 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *** * *
10123875 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10123938 GCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * * *
10124002 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAAT
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAAT
10124067 TCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
321 TCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10124101 AACTTGTTTA
Statistics
Matches: 304, Mismatches: 47, Indels: 13
0.84 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 192 0.63
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10124185 original size:215 final size:216
Alignment explanation
Indices: 10123807--10124302 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10123797 TAAATAAGTT
* * * *
10123807 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10123872 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10123937 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10124002 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10124023 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10124087 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10124150 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10124213 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * * *
10124238 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10124303 GACAAGTTCA
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 170 0.71
216 67 0.28
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10124335 original size:62 final size:62
Alignment explanation
Indices: 10124238--10124364 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10124228 ATCGTAAAAG
* * * * *
10124238 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
*
10124300 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
10124362 TTT
1 TTT
10124365 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10124639 original size:62 final size:62
Alignment explanation
Indices: 10124515--10124760 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10124505 ATCGTAAAAG
* * * * *
10124515 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10124575 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10124637 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10124699 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10124761 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10125019 original size:399 final size:397
Alignment explanation
Indices: 10124238--10124992 Score: 964
Period size: 399 Copynumber: 1.9 Consensus size: 397
10124228 ATCGTAAAAG
* * * *
10124238 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10124303 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10124368 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10124433 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10124498 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10124563 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10124628 AAATAAGTT
389 AAATAAGTT
* *
10124637 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10124702 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *** * *
10124767 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10124830 GCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * * *
10124894 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAAT
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAAT
10124959 TCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
321 TCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10124993 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 48, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 191 0.63
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10125175 original size:215 final size:216
Alignment explanation
Indices: 10124699--10125193 Score: 631
Period size: 215 Copynumber: 2.3 Consensus size: 216
10124689 TAAATAAGTT
* * * *
10124699 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10124764 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
*** * *
10124829 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10124894 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10124915 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10124979 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * ** *
10125042 CAAGCATGGAATGTTCAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACCG
129 CAAGCATGGAAAGTTCAAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCA
10125105 AAGTTATAAAAGAAATCGTAAAAG
193 AAGTTATAAAAGAAATCGTAAAAG
* * * *
10125129 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10125194 GACAAGTTCA
Statistics
Matches: 238, Mismatches: 37, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
214 81 0.34
215 124 0.52
216 33 0.14
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10125228 original size:62 final size:62
Alignment explanation
Indices: 10125129--10125255 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10125119 ATCGTAAAAG
* * * * *
10125129 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10125191 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10125253 TTT
1 TTT
10125256 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10125530 original size:62 final size:62
Alignment explanation
Indices: 10125406--10125651 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10125396 ATCGTAAAAG
* * * * *
10125406 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10125466 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10125528 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10125590 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10125652 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 143 0.85
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10125910 original size:399 final size:397
Alignment explanation
Indices: 10125129--10125883 Score: 959
Period size: 399 Copynumber: 1.9 Consensus size: 397
10125119 ATCGTAAAAG
* * *
10125129 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10125194 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10125259 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* ** *
10125324 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10125389 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10125454 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10125519 AAATAAGTT
389 AAATAAGTT
*
10125528 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10125593 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10125658 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * * *
10125720 AGCAT-GATGTGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAA
193 AGCATGGA-ATGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAA
* * * * *
10125783 AGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACA
255 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACA
10125848 ATTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
319 ATTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10125884 AACTTGTTTA
Statistics
Matches: 304, Mismatches: 45, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 17 0.06
399 185 0.61
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAATGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10125968 original size:215 final size:216
Alignment explanation
Indices: 10125590--10126085 Score: 617
Period size: 215 Copynumber: 2.3 Consensus size: 216
10125580 TAAATAAGTT
* * * *
10125590 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10125655 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10125720 AGCATGATGTGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGATATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10125785 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10125806 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10125870 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10125933 CAAGCATGGA-ATG-TTCGAAATATTTCTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAAC
129 CAAGCAT-GATATGTTTCGAAAT-TTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAAC
*
10125995 CGAAGTTATAAAAGAAATCGTAAAAG
191 CAAAGTTATAAAAGAAATCGTAAAAG
* * * * *
10126021 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10126086 GACAAGTTCA
Statistics
Matches: 240, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 8 0.03
215 167 0.70
216 65 0.27
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGATATGTTTCGAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10126118 original size:62 final size:62
Alignment explanation
Indices: 10126021--10126147 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10126011 ATCGTAAAAG
* * * * *
10126021 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
*
10126083 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
10126145 TTT
1 TTT
10126148 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10126422 original size:62 final size:62
Alignment explanation
Indices: 10126298--10126543 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10126288 ATCGTAAAAG
* * * * *
10126298 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10126358 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10126420 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10126482 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10126544 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 141 0.84
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10126802 original size:399 final size:397
Alignment explanation
Indices: 10126021--10126775 Score: 957
Period size: 399 Copynumber: 1.9 Consensus size: 397
10126011 ATCGTAAAAG
* * * *
10126021 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10126086 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10126151 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10126216 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10126281 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10126346 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10126411 AAATAAGTT
389 AAATAAGTT
* *
10126420 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10126485 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * ** * *
10126550 T-AACAGTCCAAAACTTGTTTA-AAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCG
131 TCAA-AGACCAAAACTGGTTTACAAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCT-G
* * * * *
10126612 AGCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAA
193 AGCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAA
* * * * *
10126676 GTTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGGAGATACAA
256 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAA
10126741 TTCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
320 TTCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10126776 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 47, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 15 0.05
399 186 0.61
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10126934 original size:214 final size:216
Alignment explanation
Indices: 10126482--10126976 Score: 640
Period size: 215 Copynumber: 2.3 Consensus size: 216
10126472 TAAATAAGTT
* * * *
10126482 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10126547 AATTAACAGTCCAAAACTTGTTTAAAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
*** * *
10126612 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10126677 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* *
10126698 TTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10126762 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * ** *
10126825 CAAGCATGGAATGTTCAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACCG
129 CAAGCATGGAAAGTTCAAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCA
10126888 AAGTTATAAAAGAAATCGTAAAAG
193 AAGTTATAAAAGAAATCGTAAAAG
* * * *
10126912 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10126977 GACAAGTTCA
Statistics
Matches: 241, Mismatches: 34, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
214 83 0.34
215 123 0.51
216 35 0.15
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTAAAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10127011 original size:62 final size:62
Alignment explanation
Indices: 10126912--10127038 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10126902 ATCGTAAAAG
* * * * *
10126912 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10126974 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10127036 TTT
1 TTT
10127039 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10127313 original size:62 final size:62
Alignment explanation
Indices: 10127189--10127434 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
10127179 ATCGTAAAAG
* * * * *
10127189 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10127249 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10127311 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * *
10127373 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10127435 ATTAATTAAC
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 140 0.84
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10127693 original size:399 final size:397
Alignment explanation
Indices: 10126912--10127666 Score: 964
Period size: 399 Copynumber: 1.9 Consensus size: 397
10126902 ATCGTAAAAG
* * *
10126912 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10126977 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10127042 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10127107 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10127172 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10127237 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10127302 AAATAAGTT
389 AAATAAGTT
* *
10127311 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10127376 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *** * *
10127441 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10127504 GCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * * *
10127568 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAAT
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAAT
10127633 TCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
321 TCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10127667 AACTTGTTTA
Statistics
Matches: 303, Mismatches: 48, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 191 0.63
400 68 0.22
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10127751 original size:215 final size:216
Alignment explanation
Indices: 10127373--10127868 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 216
10127363 TAAATAAGTT
* * * * *
10127373 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10127438 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
* * * *
10127503 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10127568 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10127589 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10127653 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10127716 CAAGCATGGAATGTTCGAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTTCG-AAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10127779 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * * * *
10127804 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10127869 GACAAGTTCA
Statistics
Matches: 236, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
214 1 0.00
215 169 0.72
216 66 0.28
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTCGAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10127901 original size:62 final size:62
Alignment explanation
Indices: 10127804--10127930 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10127794 ATCGTAAAAG
* * * * *
10127804 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
* *
10127866 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
10127928 TTT
1 TTT
10127931 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGAAACAACTATCACGTAAATAAGTT
Found at i:10128205 original size:62 final size:62
Alignment explanation
Indices: 10128081--10128326 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
10128071 ATCGTAAAAG
* * * * *
10128081 TTTGACAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10128141 TTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10128203 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * *
10128265 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10128327 ATTAATTAAC
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
60 25 0.15
61 1 0.01
62 140 0.84
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10128585 original size:399 final size:397
Alignment explanation
Indices: 10127804--10128558 Score: 946
Period size: 399 Copynumber: 1.9 Consensus size: 397
10127794 ATCGTAAAAG
* * * *
10127804 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAGGAGAGAAACAATTATTACGTACATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * * *
10127869 GACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* *
10127934 TCAAGGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** *
10127999 ATGGAATGTTAGAAAAATTGCTAGAAAGAATGGATATCTTGAATACTTTCTGGAACCGAAGTTAT
196 ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
* * * * *
10128064 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
261 AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
* * ** ** *
10128129 CGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCTAAGAACAAAGAGAGAAACAATTCTCACGT
326 CGTAAATAAGTTTTT-A-AAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGT
10128194 AAATAAGTT
389 AAATAAGTT
* * *
10128203 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
* * * *
10128268 GACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATTAAT
66 GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
* * *** * *
10128333 T-AACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTT-CTCGA
131 TCAA-AGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCT-GA
* * * * *
10128396 GCATGGAAAGTTTGGAAATTTGC-ACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
194 GCATGGAAAGTTAGAAAAATTGCTACAAA-GAATGGAT-ATCTTGAATACTTTAAGGAACCAAAG
* * * * *
10128460 TTATAAAAGAACTCGTGAAAGTTTGACAAGTTTGAAAGTTTATCCAAGAACCAAGGAGATACAAT
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAA-GAGAAACAAT
10128525 TCTCACGTAAATAAGTTTTT-AA-TTT-AAAGACCAA
321 TCTCACGTAAATAAGTTTTTAAAGTTTGAAAGACCAA
10128559 AACTTGTTTA
Statistics
Matches: 301, Mismatches: 50, Indels: 13
0.83 0.14 0.04
Matches are distributed among these distances:
396 3 0.01
397 3 0.01
398 10 0.03
399 189 0.63
400 68 0.23
401 28 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (397 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTATCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTTATTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
ATGGAAAGTTAGAAAAATTGCTACAAAGAATGGATATCTTGAATACTTTAAGGAACCAAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAAAGTTTGAAAGACCAACTAAGAACAAAGAGACAAACAATTCTCACGTAA
ATAAGTT
Found at i:10128643 original size:215 final size:216
Alignment explanation
Indices: 10128265--10128760 Score: 615
Period size: 215 Copynumber: 2.3 Consensus size: 216
10128255 TAAATAAGTT
* * * * *
10128265 TTTGACAAGTTCAAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACTTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* ** * * * *
10128330 AATTAACAGTCCAAAACTTGTTTACAAAATTTCAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
*** * *
10128395 AGCATGGAAAGTTTGGAAATTTGCACAAAGGAATGTATCGTCTTGAATACTTTAAGGAACCAAAG
131 AGCATGGAAAGTTAAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
* *
10128460 TTATAAAAGAACTCGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* ** *
10128481 TTTGACAAGTTTGAAAGTTTATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10128545 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTT-TC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCT-
* * * * **
10128608 CAAGCATGGAATGTTCAAAAAATTT-CTA-GAAGGAATGGATTATCTTGAATAGTTTTTGGAACC
129 CAAGCATGGAAAGTT-AAAAAATTTGC-ACAAAGGAATGGATCATCTTGAATACTTTAAGGAACC
*
10128671 GAAGTTATAAAAGAAATCGTAAAAG
192 AAAGTTATAAAAGAAATCGTAAAAG
* * * *
10128696 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10128761 GACAAGTTCA
Statistics
Matches: 237, Mismatches: 38, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 169 0.71
216 67 0.28
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACAATTTAGACCAAATGATGGGATTTCTCA
AGCATGGAAAGTTAAAAAATTTGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10128795 original size:62 final size:62
Alignment explanation
Indices: 10128696--10128822 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10128686 ATCGTAAAAG
* * * * *
10128696 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10128758 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGTAACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10128820 TTT
1 TTT
10128823 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10129094 original size:62 final size:62
Alignment explanation
Indices: 10129005--10129397 Score: 588
Period size: 62 Copynumber: 6.3 Consensus size: 62
10128995 CGAAGAACTA
* * * *
10129005 AGAGAAATAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTCGTCCAAGAACAAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
*
10129067 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACCAGTTTGGAAGTTCGTCCAAGAACCAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
* * *
10129129 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAAGAACCAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
* * * ** **
10129191 AGAGAAACAATTCTCACGTAATTAAGTTTTTGAAAAGTTTGGAAGCTCGTCTTAGAAATAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
*
10129253 AGTGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
* * * * * *
10129315 AGAGAAACAATTCTCACATAAATAAGTTTTTGACTAGTTTGGACGTTTGTCCAATAACTAAG
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
10129377 AGAGAAACAATTCTCACGTAA
1 AGAGAAACAATTCTCACGTAA
10129398 CTAAATTATT
Statistics
Matches: 296, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 296 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
Found at i:10129759 original size:215 final size:217
Alignment explanation
Indices: 10129363--10129840 Score: 587
Period size: 215 Copynumber: 2.2 Consensus size: 217
10129353 TTGGACGTTT
* * * * * *
10129363 GTCCAATAACTAAGAGAGAAACAATTCTCACGTAACTAAATTATTAATTAACAGTCCAAAACTTG
1 GTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTG
* * ***
10129428 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAA
66 TTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATGGAATGTTAAAAA
** * * *
10129493 ATTTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
130 ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGT-A
10129558 A-AGTTTGACAAGTTCAAAAGTTC
194 ACAGTTTGACAAGTTCAAAAGTTC
*
10129581 GTCCAACAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGGCCAAAACTT
1 GTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGGCCAAAACTT
10129644 GTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATGGAATGTTCAAA
65 GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATGGAATGTT-AAA
* * *
10129707 AAATTT-C-TAGAAGGAATGGATTAACTTTAATACATTT-TGGAA-CTGAAGTTATAAAAGAAAT
128 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCT-AAGTTATAAAAGAAAT
** *
10129768 CGTAACAGTTTGACAAGTTCGGATGTTC
190 CGTAACAGTTTGACAAGTTCAAAAGTTC
* * *
10129796 GTCCAAGAACCAAGAGAGAAAGAATTCTTACGTAAATAAGTTTTT
1 GTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10129841 GACAAGTTCG
Statistics
Matches: 225, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
214 6 0.03
215 119 0.53
216 41 0.18
217 43 0.19
218 16 0.07
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (217 bp):
GTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTG
TTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATGGAATGTTAAAAAA
TTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTAAC
AGTTTGACAAGTTCAAAAGTTC
Found at i:10129850 original size:54 final size:54
Alignment explanation
Indices: 10129792--10129902 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 54
10129782 AAGTTCGGAT
* * * *
10129792 GTTCGTCCAAGAACCAAGAGAGAAAGAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * *
10129846 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10129900 GTT
1 GTT
10129903 TGAAAGTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (54 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Found at i:10130205 original size:62 final size:62
Alignment explanation
Indices: 10130108--10130409 Score: 426
Period size: 62 Copynumber: 4.9 Consensus size: 62
10130098 ATCGAAAAAG
* *
10130108 TTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10130170 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10130232 TTTGAAAAGTT-TGAAGCTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10130293 TTTGTCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10130355 TTTGACTAGTTTGGACGTTTGTCCAATAACTAAGAGAGAAACAATTCTCACGTAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10130410 CTAAATTATT
Statistics
Matches: 214, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
61 52 0.24
62 162 0.76
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10130243 original size:332 final size:324
Alignment explanation
Indices: 10129573--10130295 Score: 790
Period size: 332 Copynumber: 2.2 Consensus size: 324
10129563 TGACAAGTTC
* * *
10129573 AAAAGTTCGTCCAACAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAAAGGCC
1 AAAAGTTTGTCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAAGTTAAAGGCC
* * * ** *
10129637 AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCATGGAATGT
65 AAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGACTACCCGAGCATGGAATGT
* * ** * * *
10129702 TCAAAAAATTTCTAGAAGGAATGGATTAACTTTAATACATTTTGGAACTGAAGTTATAAAAGAAA
130 TCAAAAAATTGCTAGAAAGAATGGAACAACTTGAATACATTTAGGAACCGAAGTTATAAAAGAAA
* * * * *
10129767 TCGTAACAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAGAATTCTTACGTAAA
195 TCGAAAAAGTTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAA
* * *
10129832 TAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGA
260 TAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTG-
10129897 CA
324 -A
* *
10129899 AGTTTGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTTT-CGTTC
1 A-----AAAGTTTGTCCAAGAACCAAGAGAGAA-CAATT-CTCACGTAAATAAGTTTTTAAGTTA
* * * *
10129962 GAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACGAAATTATGCGACTACCCGAGCAT
59 AAGG-CCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGACTACCCGAGCAT
* ** * * * *
10130027 GGGATGTTCGTAAAATTGCTCGAAAGAATGGAACATCTTGGATAC-TTTCAGGAACCGAAGTTGT
123 GGAATGTTCAAAAAATTGCTAGAAAGAATGGAACAACTTGAATACATTT-AGGAACCGAAGTTAT
10130091 AAAAGAAATCGAAAAAGTTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCT
187 AAAAGAAATCGAAAAAGTTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCT
*
10130156 CACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAC
252 CACGTAAATAAGTTTTTGACAAGTTC--------GTCCAAGAACCAAGAGAGAAACAATACTCAC
* *
10130221 GTAATTAAGTTTTTG-
309 GTAAATAAGTGTTTGA
*
10130236 AAAAGTTTGAAGCTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTT
1 AAAAGTTT---G-TC--C-AAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
10130296 GTCAAGTTTG
Statistics
Matches: 329, Mismatches: 41, Indels: 41
0.80 0.10 0.10
Matches are distributed among these distances:
326 1 0.00
331 28 0.09
332 216 0.66
333 1 0.00
335 1 0.00
336 2 0.01
337 1 0.00
338 2 0.01
339 35 0.11
340 42 0.13
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (324 bp):
AAAAGTTTGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAAGTTAAAGGCCA
AAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATGATGCGACTACCCGAGCATGGAATGTT
CAAAAAATTGCTAGAAAGAATGGAACAACTTGAATACATTTAGGAACCGAAGTTATAAAAGAAAT
CGAAAAAGTTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGA
Found at i:10130267 original size:123 final size:124
Alignment explanation
Indices: 10130108--10130409 Score: 417
Period size: 123 Copynumber: 2.4 Consensus size: 124
10130098 ATCGAAAAAG
* * * * *
10130108 TTTGACAAGTTCGGATGTTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGAAAAGTTTGGAAGCTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTT
* *
10130173 GACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
66 GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10130232 TTTGAAAAGTTT-GAAGCTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTT
1 TTTGAAAAGTTTGGAAGCTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTT
* * * *
10130296 GTCAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTTCACGTAAATAAGTT
66 GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * * * * *
10130355 TTTGACTAGTTTGGACGTTTGTCCAATAACTAAGAGAGAAACAATTCTCACGTAA
1 TTTGAAAAGTTTGGAAGCTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAA
10130410 CTAAATTATT
Statistics
Matches: 157, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
123 111 0.71
124 46 0.29
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (124 bp):
TTTGAAAAGTTTGGAAGCTCGTCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTT
GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10130837 original size:54 final size:54
Alignment explanation
Indices: 10130778--10130884 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
10130768 GTTCGGATGT
* * *
10130778 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAATTTTTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACAAGC
* * *
10130832 TCGTCCAAGAACCAAGAGTGAAACAGTACTCACGTAAATAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACAAG
10130885 TTCGAAAGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACAAGC
Found at i:10131189 original size:62 final size:61
Alignment explanation
Indices: 10131092--10131339 Score: 379
Period size: 62 Copynumber: 4.0 Consensus size: 61
10131082 ATCGTAAAAG
* * *
10131092 TTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10131154 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
*
10131216 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * * * *
10131278 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCACATAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10131340 ATTAATTAAC
Statistics
Matches: 175, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
61 2 0.01
62 171 0.98
63 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (61 bp):
TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10131277 original size:340 final size:331
Alignment explanation
Indices: 10130623--10131280 Score: 838
Period size: 340 Copynumber: 2.0 Consensus size: 331
10130613 CAAAAGGCCA
* * * * * * *
10130623 AAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCATGGAGTGTT
1 AAACTTGTATACAAAAAGACAAACAATTTAGACCAAATGAAGCGACTTCCCGAGCATGGAGTGTT
* * * *
10130688 CAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTATAAAAGAAATC
66 CAAAAAATTGCTAGAAAGAATGGATCAACTTGAATACATTTAGGAACCGAAGTATAAAAGAAATC
** * * *
10130753 GTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATA
131 GTAAAAGTTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
* * *
10130818 AATTTTTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCACGTAAATAAGTGTTTGACA
196 AATTTTTGACAAGCTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACA
* *
10130883 AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTGCCACGTAGATAAGTTTTTAATTCAA
261 AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTGCCACGTAAATAAGTTTTTAATTCAA
10130948 GGACCG
326 GGACCG
* * *
10130954 AAACTTGTTTCCAAAAAGACAAACAATTTAGACCAAATTAAGCGACTTCCCGAGCATAGGA-TGT
1 AAACTTGTATACAAAAAGACAAACAATTTAGACCAAATGAAGCGACTTCCCGAGCAT-GGAGTGT
* * * * *
10131018 TCGAACAATTGCTCA-AAAGAATGGATCATCTTGGATAC-TTTCAGGAACCGAAGTTGTAAAAGA
65 TCAAAAAATTGCT-AGAAAGAATGGATCAACTTGAATACATTT-AGGAACCGAAG-TATAAAAGA
10131081 AATCGTAAAAGTTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
127 AATCGTAAAAGTTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * *
10131146 ATTAAGTTTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTGAAT
192 AATAAATTTTTGAC--------AAGCTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAAT
* * *
10131211 AAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAA
249 AAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTGC-CACGTAAATAA
10131275 GTTTTT
313 GTTTTT
10131281 GACAAGTTTG
Statistics
Matches: 277, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
330 3 0.01
331 89 0.32
332 84 0.30
339 1 0.00
340 100 0.36
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (331 bp):
AAACTTGTATACAAAAAGACAAACAATTTAGACCAAATGAAGCGACTTCCCGAGCATGGAGTGTT
CAAAAAATTGCTAGAAAGAATGGATCAACTTGAATACATTTAGGAACCGAAGTATAAAAGAAATC
GTAAAAGTTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATA
AATTTTTGACAAGCTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACA
AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTGCCACGTAAATAAGTTTTTAATTCAA
GGACCG
Found at i:10131529 original size:404 final size:393
Alignment explanation
Indices: 10130776--10131542 Score: 909
Period size: 404 Copynumber: 1.9 Consensus size: 393
10130766 ATGTTCGGAT
* * *
10130776 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAATTTTTGACAAGCTCGTCCAAG
1 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAATTTTTGACAAGCTCATCCAAG
* *
10130841 AACCAAGAGTGAAACAGTACTCACGTAAATAAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAAC
66 AACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAAC
* * * * *
10130906 CAAGAGAGAACCAATTGCCACGTAGATAAGTTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAA
131 CAAGAGAGAAACAATTGCCACATAGATAAGTTATTAATTCAAAGACCAAAACTTGTTTCCAAAAA
* *
10130971 GACAAACAATTTAGACCAAATTAAGCGACTTCCCGAGCATAGGATGTTCGAACAATTGCTCAAAA
196 GACAAACAATTTAGACCAAATGAAGCGACTTCCCGAGCATAGGATGTTCGAACAATTACTCAAAA
* * *
10131036 GAATGGATCATCTTGGATACTTTCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAC
261 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAC
* * *
10131101 TTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTT
326 TTCAGAAATTCGTCAAACAACCAAG-GAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTT
10131166 AGAA
390 AGAA
* * *
10131170 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTT
1 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAATTTTTGAC--------AAGCT
* * * * *
10131235 CATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
58 CATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGTTCGAAAGTTCAT
* * *
10131300 CCAAGAGCTAAGAGAGAAACAATT-CTCACATA-ACTAAGTTATTAATT-AACAGTCCAAAACTT
123 CCAAGAACCAAGAGAGAAACAATTGC-CACATAGA-TAAGTTATTAATTCAA-AGACCAAAACTT
* * * * * * * *
10131362 GTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGA-TCTCTCGAGCAT-GGAATGTTTG
185 GTTT--CCAAAAAGACAAACAATTTAGACCAAATGAAGCGACT-TCCCGAGCATAGG-ATG-TTC
* * * ** *
10131425 GAA-ATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTC
245 GAACAATTACTCAAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATC
* * *
10131489 GTGAAAGTTTGACAAGTTC-GAAAATTCGTCAAACAACCAAGGAGATACAATTCT
310 GTAAAAGTTTGACAACTTCAG-AAATTCGTCAAACAACCAAGGAGAAACAATTCT
10131543 GACATAAATA
Statistics
Matches: 310, Mismatches: 46, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
394 48 0.15
401 4 0.01
402 112 0.36
403 16 0.05
404 125 0.40
405 5 0.02
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (393 bp):
GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAATTTTTGACAAGCTCATCCAAG
AACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAAC
CAAGAGAGAAACAATTGCCACATAGATAAGTTATTAATTCAAAGACCAAAACTTGTTTCCAAAAA
GACAAACAATTTAGACCAAATGAAGCGACTTCCCGAGCATAGGATGTTCGAACAATTACTCAAAA
GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAC
TTCAGAAATTCGTCAAACAACCAAGGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTA
GAA
Found at i:10131889 original size:62 final size:63
Alignment explanation
Indices: 10131708--10131892 Score: 214
Period size: 62 Copynumber: 3.0 Consensus size: 63
10131698 ATCATAAAAG
* * * *
10131708 TTTGACAAGTTCGGATGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTTACGTAAATAAGTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * * * * * *
10131770 TTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGT-C
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * *
10131832 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGT
10131893 TTTTCGTTCG
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
62 75 0.75
63 25 0.25
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24
Consensus pattern (63 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
Found at i:10132115 original size:327 final size:324
Alignment explanation
Indices: 10131626--10132223 Score: 840
Period size: 327 Copynumber: 1.8 Consensus size: 324
10131616 GATTTTCCGC
** * * **
10131626 GCATGGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGT
1 GCATGGAATGCTCGAAAAATTGCTAGAAAGAATGGATCAACTTGAATACTTTCAGGAACCGAAGT
* *
10131691 TAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAAAAGAGAGAAACAATTCTT
66 TAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAAAAAGAGAGAAACAATTCTC
* * *
10131756 ACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCAT
131 ACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAC
* * * *
10131821 GCAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGC-CACGT
196 ACAAATAAGTCTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATT-CTCACGT
10131885 AAATAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTTATGCGACTACTCGA
260 AAATAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTTATGCGACTACTCGA
* * * * *
10131950 GCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACCGAAGT
1 GCATGGAATGCTCGAAAAATTGCTAGAAAGAATGGATCAACTTGAATACTTTCAGGAACCGAAG-
* *
10132015 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAAT
65 T-T-AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAA-AAAGAGAGAAACAAT
* * * * * * *
10132080 TCTCACGTAATTAAGT-TTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTC
127 TCTCACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATAC
* * * *
10132144 TCACATAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCA
192 TCACACAAATAAGTCTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCA
10132209 CGTAAATAAGTTTTT
257 CGTAAATAAGTTTTT
10132224 TACAAGTTTG
Statistics
Matches: 236, Mismatches: 33, Indels: 7
0.86 0.12 0.03
Matches are distributed among these distances:
324 53 0.22
325 1 0.00
326 2 0.01
327 152 0.64
328 28 0.12
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (324 bp):
GCATGGAATGCTCGAAAAATTGCTAGAAAGAATGGATCAACTTGAATACTTTCAGGAACCGAAGT
TAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAAAAAGAGAGAAACAATTCTC
ACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAC
ACAAATAAGTCTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTA
AATAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTTATGCGACTACTCGA
Found at i:10132125 original size:62 final size:62
Alignment explanation
Indices: 10132035--10132282 Score: 379
Period size: 62 Copynumber: 4.0 Consensus size: 62
10132025 ATCGTAAAAG
* * * *
10132035 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10132097 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10132159 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10132221 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10132283 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 169 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10132756 original size:63 final size:62
Alignment explanation
Indices: 10132657--10132842 Score: 221
Period size: 62 Copynumber: 3.0 Consensus size: 62
10132647 AAAGTTTGAC
* * *
10132657 AAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAAA
* * * * * * *
10132720 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGAC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
** * *
10132782 AAGTTCAAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTAC-CACGTAAATAAGTTTTTAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTTAA
10132843 TCCAAGGACC
Statistics
Matches: 102, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
62 53 0.52
63 49 0.48
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (62 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
Found at i:10132805 original size:62 final size:63
Alignment explanation
Indices: 10132649--10132836 Score: 227
Period size: 63 Copynumber: 3.0 Consensus size: 63
10132639 AAATCATAAA
* * * *
10132649 AGTTTGACAAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGT
* * * * * *
10132712 ATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGT
** * *
10132775 -GTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTAC-CACGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TACTCACGTAAATAAGT
10132837 TTTTAATCCA
Statistics
Matches: 104, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
62 48 0.46
63 56 0.54
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (63 bp):
AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGT
Found at i:10133083 original size:62 final size:62
Alignment explanation
Indices: 10132993--10133240 Score: 379
Period size: 62 Copynumber: 4.0 Consensus size: 62
10132983 ATCGTAAAAG
* * * *
10132993 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10133055 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10133117 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10133179 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10133241 ATTAATTAAC
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 169 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10133595 original size:215 final size:217
Alignment explanation
Indices: 10133199--10133674 Score: 579
Period size: 215 Copynumber: 2.2 Consensus size: 217
10133189 TTGGACGTTT
* * * * * * *
10133199 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTG
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGACCAAAACTTG
* * * ***
10133264 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAA
66 TTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAA
** * ** * *
10133329 ATTTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
130 ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
10133394 AAGTTTGACAAGTTCGAAAGTTC
195 AAGTTTGACAAGTTCGAAAGTTC
*
10133417 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGACCAAAACTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGACCAAAACTT
*
10133480 GTTT-ACAGAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATGTTCAAA
65 GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTT-AAA
* *
10133543 AAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTATAAAAGAAATC
128 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATC
* * *
10133605 GTAAAAGTTTGACATGTTCGGATGTTC
191 GTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10133632 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTT
10133675 CTGACAAGCT
Statistics
Matches: 221, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 2 0.01
215 122 0.55
216 39 0.18
217 42 0.19
218 16 0.07
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (217 bp):
GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGACCAAAACTTG
TTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAAA
TTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAA
AGTTTGACAAGTTCGAAAGTTC
Found at i:10133689 original size:54 final size:54
Alignment explanation
Indices: 10133630--10133736 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
10133620 GTTCGGATGT
* *
10133630 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * * *
10133684 TCGTCCAAGAACCATGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10133737 TTTGAAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Found at i:10134041 original size:62 final size:61
Alignment explanation
Indices: 10133944--10134191 Score: 374
Period size: 62 Copynumber: 4.0 Consensus size: 61
10133934 ATCGTAAAAG
*
10133944 TTTGACAAGTTCA-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10134006 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10134068 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* *
10134130 TTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10134192 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
61 4 0.02
62 166 0.95
63 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (61 bp):
TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10134298 original size:951 final size:951
Alignment explanation
Indices: 10130615--10139851 Score: 15052
Period size: 957 Copynumber: 9.7 Consensus size: 951
10130605 AGGAGATACA
* *
10130615 AAAGGCCAAAACTTGTATACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* *
10130680 GGAGTGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTATAA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGT-T-A
* *
10130745 AAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA
129 AAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA
* *
10130810 CGTAAATAA--ATTTTTG-AC-AAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCACGTAAAT
194 CGTAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAAT
* *
10130871 AAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATTGCCACGTAGATAAG
259 AAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAG
* * * *
10130936 TTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAGACAAACAATTTAGACCAAATTAAGCGACT
324 TTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGACT
* * *
10131001 TCCCGAGCATAGGATGTTCGAACAATTGCTCAAAAGAATGGATCATCTTGGATACTTTCAGGAAC
389 T-CCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAAC
* * * *
10131066 CGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAACTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
453 CGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGA
* * *
10131131 AACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAAC
518 AACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAAC
* * *
10131196 AATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAAT
583 AATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAAT
* * * *
10131261 TCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCT
648 TCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCT
* *
10131326 CACATAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGAC
713 CACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGAC
* *
10131391 CAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGA
778 CAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGA
*
10131456 ATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAATTCGTCAA
843 ATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCAA
* *
10131521 ACAACCAAGGAGATACAATTCTGACATAAATAAATTCTTAATTT
908 ACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10131565 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* * *
10131630 GGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAAA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAAA
*
10131695 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA-AAAGAGAGAAACAATTCTTACG
131 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACG
* * *
10131759 TAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCA
196 TAAATAAGTATTTT----AGTAC-GAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTA
* *
10131824 AATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAAT
256 AATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAAT
** * *
10131889 AAGTTTTTCGTTCGAGGACCGAAACTTGTTTAC---AAAA-AGAC-A---A-A-C---TTATGCG
321 AAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCG
*
10131941 ACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
386 ACTTC-CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
*
10132006 AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
450 AACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
*
10132071 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGA
515 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGA
*
10132136 AACAATTCTCACATAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAAC
580 AACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAAC
10132201 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
645 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
10132266 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
710 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
10132331 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
775 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
10132396 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
840 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
*
10132461 CAAACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTTAATTT
905 CAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* *
10132508 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTT-TCGCGCA
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCT-GAGCA
* * * *
10132572 TGGAATGCTCGAAAATTTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAA
65 TGGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAA
*
10132637 AGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCTTAC
130 AGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
* *
10132702 GTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGT
195 GTAAATAAGTATTTT----AGTAC-GAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGT
* * *
10132767 AAATAAGTGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTACCACGTAAA
255 AAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAA
* *
10132832 TAAGTTTTTAATCCAAGGACCGAAACTTGTTTACAAAAAAGGACATACTATTTAGACCAAATTAT
320 TAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAA--ACAAACTATTTAGACCAAATTAT
* *
10132897 GCGGCTTCCCGAGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATCTTGGATACTTTC
383 GCGACTT-CCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTC
*
10132961 AGGAACAGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA
447 AGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA
*
10133026 GAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAG
512 GAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAG
*
10133091 AGAAACAATTCTCACATAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAA
577 AGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAA
10133156 AACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAAC
642 AACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAAC
10133221 AATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTAT
707 AATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTAT
* * *
10133286 TTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGATCG
772 TTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCG
10133351 TCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTT
837 TCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTT
* * * *
10133416 CGTCCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
902 CGTCAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10133466 AAAGACCAAAACTTGTTTACAGAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* *
10133531 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAG-T-T-
* *
10133596 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
128 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* *
10133661 ACGTAAATAAGT-TTCT-G-AC-AAGCTCGTCCAAGAACCATGAGTGAAACAGTACTCATGTAAA
193 ACGTAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
* *
10133722 TAAGTGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCATGTAAATAA
258 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
* * *
10133787 GTTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACAATTTAGACCAAATTAAGCGAC
323 GTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGAC
*
10133852 TTCCAGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTTAGGAA
388 TTCC-GAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAA
** *
10133917 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCAAATGTTCGTCCAAGAACCAAGAGAG
452 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAG
* *
10133982 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAA
517 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAA
* * *
10134047 CAATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAA
582 CAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAA
* * * *
10134112 TTCTCACGTAAACAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATT
647 TTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAGAAACAATT
*
10134176 CTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTG
711 CTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTG
* *
10134241 ACCAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTT
776 ACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTT
*
10134306 GAATGCTTTAAGGAACCTCAGTTATAAAACAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTC
841 GAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTC
*
10134371 AAACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTTAATTT
906 AAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10134417 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* * *
10134482 GGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAAA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAAA
* *
10134547 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACG
131 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACG
* * *
10134612 TAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCA
196 TAAATAAGTATTTT----AGTAC-GAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTA
* * *
10134677 AATAAGTCTTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGCCACGTAAAT
256 AATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAAT
** * * *
10134742 AAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATTATGCG
321 AAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCG
*
10134807 ACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
386 ACTTC-CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
*
10134872 AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
450 AACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
*
10134937 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGA
515 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGA
*
10135002 AACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAAC
580 AACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAAC
10135067 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
645 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
10135132 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
710 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
* * * *
10135197 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGATCATCT
775 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
*
10135262 TGAATGCTTTAAGGAACCTCAATTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
840 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
* * * *
10135327 CCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
905 CAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* *
10135374 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* *
10135439 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAG-T-T-
* *
10135504 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
128 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
*
10135569 ACGTAAATAAGT-TTCT-G-AC-AAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
193 ACGTAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
* *
10135630 TAAGTGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCATGTAAATAA
258 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
* * *
10135695 GTTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACAATTTAGACCAAATTAAGCGAC
323 GTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGAC
*
10135760 TTCCAGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTTAGGAA
388 TTCC-GAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAA
** *
10135825 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCAAATGTTCGTCCAAGAACCAAGAGAG
452 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAG
* *
10135890 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAA
517 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAA
* * *
10135955 CAATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAA
582 CAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAA
* * * *
10136020 TTCTCACGTAAACAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATT
647 TTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAGAAACAATT
*
10136084 CTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTG
711 CTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTG
* *
10136149 ACCAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTT
776 ACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTT
*
10136214 GAATGCTTTAAGGAACCTCAGTTATAAAACAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTC
841 GAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTC
*
10136279 AAACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTTAATTT
906 AAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10136325 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* * *
10136390 GGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAAA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAAA
* *
10136455 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACG
131 GAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACG
* * *
10136520 TAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCA
196 TAAATAAGTATTTT----AGTAC-GAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTA
* * *
10136585 AATAAGTCTTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGCCACGTAAAT
256 AATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAAT
** * * *
10136650 AAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATTATGCG
321 AAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCG
*
10136715 ACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
386 ACTTC-CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGG
*
10136780 AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
450 AACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAG
* *
10136845 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGGGAGA
515 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGA
* *
10136910 AACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCCAGGAACCAAGAGAAAAAC
580 AACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAAC
10136975 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
645 AATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAAT
10137040 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
710 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
* * *
10137105 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGATCGTCT
775 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
10137170 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
840 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
* * * *
10137235 CCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
905 CAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10137282 GAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* *
10137347 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAG-T-T-
* *
10137412 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
128 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* *
10137477 ACGTAAATAAGT-TTCT-G-AC-AAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAC
193 ACGTAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
10137538 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
258 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
*
10137603 GTTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACTATTTAGACCAAATTATGCGAC
323 GTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGAC
* *
10137668 TTCCCGGGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATCTTGGATACTTTCAGGAA
388 TT-CCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAA
* *
10137732 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCTGATGTTCGTCCAAGAACCAAGAGAG
452 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAG
* *
10137797 AAACAATTCTCACGTGAA-TAAGTTTTTGACAAGTTTGGACGTTCATCTAAGAACCAAGAGAGAA
517 AAACAATTCTCACGT-AATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAA
*
10137861 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACA
581 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACA
* * *
10137926 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAAT
646 ATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAGAAACAAT
*
10137990 TCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
710 TCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTT
* *
10138055 GACCAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
775 GACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCT
10138120 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
840 TGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGT
*
10138185 CAAACAACCAAGGAGATACAATTCTAACATAAATAAGTTCTTAATTT
905 CAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* *
10138232 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTT-TCGCGCA
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCT-GAGCA
* * *
10138296 TGGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAA
65 TGGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAA
* *
10138361 AGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACTATTCTTAC
130 AGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
* * *
10138426 GTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGC
195 GTAAATAAGTATTTT----AGTAC-GAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGT
* *
10138491 AAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAA
255 AAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAA
** * * * *
10138556 TAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAATTATTTAGACAAAATTATGC
320 TAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGC
*
10138621 GACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAG
385 GACTTC-CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAG
*
10138686 GAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGA
449 GAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGA
* *
10138751 GAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGGGAG
514 GAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAG
* *
10138816 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCCAGGAACCAAGAGAAAAA
579 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAA
10138881 CAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAA
644 CAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAA
10138946 TTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTT
709 TTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTT
* * *
10139011 TGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGATCGTC
774 TGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTC
10139076 TTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCG
839 TTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCG
* * * *
10139141 TCCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
904 TCAAACAACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
* * *
10139189 GAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
* *
10139254 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAG-T-T-
* *
10139319 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
128 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* *
10139384 ACGTAAATAAGT-TTCT-G-AC-AAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAC
193 ACGTAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
10139445 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
258 TAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
*
10139510 GTTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACTATTTAGACCAAATTATGCGAC
323 GTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGAC
* *
10139575 TTCCCGGGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATCTTGGATACTTTCAGGAA
388 TT-CCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAA
* * *
10139639 CAGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCTGATGTTCGTCCAAGAACCAAGAGAG
452 CCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAG
* *
10139704 AAACAATTCTCACGTGAA-TAAGTTTTTGACAAGTTTGGACGTTCATCTAAGAACCAAGAGAGAA
517 AAACAATTCTCACGT-AATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAA
* * *
10139768 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACA
581 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACA
* *
10139833 ATTCTCGCGTAACTAAGTT
646 ATTCTCACGTAAATAAGTT
10139852 ATTAATTAAC
Statistics
Matches: 7713, Mismatches: 486, Indels: 176
0.92 0.06 0.02
Matches are distributed among these distances:
942 1 0.00
943 713 0.09
944 174 0.02
946 1 0.00
947 105 0.01
948 194 0.03
949 21 0.00
950 1015 0.13
951 1801 0.23
952 140 0.02
953 8 0.00
954 9 0.00
955 5 0.00
956 322 0.04
957 2210 0.29
958 641 0.08
959 55 0.01
960 224 0.03
961 74 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (951 bp):
AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCAT
GGAATGCTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAAA
GAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACG
TAAATAAGTATTTTAGTACGAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAA
GTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTT
TTTAATTCAAGGACCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGACTTC
CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACCGA
AGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCT
CACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCAC
GTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAA
ATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATG
CTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCAAACA
ACCAAGGAGATACAATTCTCACATAAATAAGTTCTTAATTT
Found at i:10134513 original size:215 final size:212
Alignment explanation
Indices: 10134130--10134620 Score: 508
Period size: 215 Copynumber: 2.3 Consensus size: 212
10134120 TAAACAAGTT
* * * *
10134130 TTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGT-CAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATT
* * * *
10134195 AATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATCTCT
65 AATTAACAGGCCAAAACTTGTTT-GACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * ** * **
10134260 CGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTC
129 CGAGCATGGAATGCTCGAAAATTTA-TCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGA
* *
10134325 AGTTATAAAACAACTCGTGAAAG
193 AGTTA-AAAA-AA-TCATAAAAG
* * * * *
10134348 TTTGACAAGTTCGAAAGTTCGTCAAACAACCAAG-GAGATACAATTCTGACATAAATAAGTTCTT
1 TTTGACAAGTTCGGAAGTTCGTCAAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATT
* *
10134412 AATTTAA-AGGCCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGGGAT-TTT
65 AA-TTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * * **
10134474 CCGCGCATGGAATGCTCGAAAAATTT-TTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACC
129 -CGAGCATGGAATGCTCG-AAAATTTATCA-AAAGAATGGATCAACTTGAATACTTTAAGGAACC
*
10134538 GAAGTTAAAGAAATCATAAAAG
191 GAAGTTAAAAAAATCATAAAAG
* * *
10134560 TTTGACAAGTTCGGATGTTCATCCAAGAAA-CAAGAGAGAAACAATTCTTACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGT-CAA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10134621 ATTTTAAAAA
Statistics
Matches: 227, Mismatches: 38, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
212 30 0.13
213 30 0.13
214 8 0.04
215 79 0.35
216 6 0.03
217 45 0.20
218 29 0.13
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (212 bp):
TTTGACAAGTTCGGAAGTTCGTCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTA
ATTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCTCG
AGCATGGAATGCTCGAAAATTTATCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAAGT
TAAAAAAATCATAAAAG
Found at i:10134665 original size:63 final size:62
Alignment explanation
Indices: 10134566--10134749 Score: 199
Period size: 62 Copynumber: 3.0 Consensus size: 62
10134556 AAAGTTTGAC
* * * *
10134566 AAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAAA
* * * * * * * *
10134629 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGTCTTTGAC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
* * * *
10134691 AAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTTT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTT
10134750 CGTTCGAGGA
Statistics
Matches: 98, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
62 51 0.52
63 47 0.48
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (62 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
Found at i:10134742 original size:62 final size:63
Alignment explanation
Indices: 10134560--10134745 Score: 205
Period size: 63 Copynumber: 3.0 Consensus size: 63
10134550 ATCATAAAAG
* * * * *
10134560 TTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * * * * * *
10134623 TTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGT-C
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * * *
10134685 TTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGT
10134746 TTTTCGTTCG
Statistics
Matches: 99, Mismatches: 23, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
62 48 0.48
63 51 0.52
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.25
Consensus pattern (63 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
Found at i:10134991 original size:62 final size:62
Alignment explanation
Indices: 10134901--10135148 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10134891 ATCGTAAAAG
* * *
10134901 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10134963 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10135025 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10135087 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10135149 ATTAATTAAC
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 171 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10135505 original size:215 final size:217
Alignment explanation
Indices: 10135107--10135582 Score: 590
Period size: 215 Copynumber: 2.2 Consensus size: 217
10135097 TTGGACGTTT
* * * * * * *
10135107 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTG
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGACCAAAACTTG
* * * ***
10135172 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAA
66 TTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAA
* * * *
10135237 ATTTGCTTAAAGGAATGGATCATCTTGAATGCTTTAAGGAACCTCAATTATAAAAGAACTCGTGA
130 ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTCAATTATAAAAGAAATCGTAA
10135302 AAGTTTGACAAGTTCGAAAGTTC
195 AAGTTTGACAAGTTCGAAAGTTC
*
10135325 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGACCAAAACTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGACCAAAACTT
10135388 GTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATGTTCAAA
65 GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTT-AAA
* * *
10135451 AAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACC-GAAGTTATAAAAGAAAT
128 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCTCAA-TTATAAAAGAAAT
* * *
10135512 CGTAAAAGTTTGACATGTTCGGATGTTC
190 CGTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10135540 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTT
10135583 CTGACAAGCT
Statistics
Matches: 223, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
214 4 0.02
215 122 0.55
216 39 0.17
217 42 0.19
218 16 0.07
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (217 bp):
GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGACCAAAACTTG
TTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAAA
TTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTCAATTATAAAAGAAATCGTAAA
AGTTTGACAAGTTCGAAAGTTC
Found at i:10135597 original size:54 final size:54
Alignment explanation
Indices: 10135538--10135644 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
10135528 GTTCGGATGT
* *
10135538 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * *
10135592 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10135645 TTTGAAAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Found at i:10135949 original size:62 final size:61
Alignment explanation
Indices: 10135852--10136099 Score: 374
Period size: 62 Copynumber: 4.0 Consensus size: 61
10135842 ATCGTAAAAG
*
10135852 TTTGACAAGTTCA-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10135914 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10135976 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAACAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* *
10136038 TTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10136100 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 8, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
61 4 0.02
62 166 0.95
63 4 0.02
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (61 bp):
TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10136421 original size:215 final size:212
Alignment explanation
Indices: 10136038--10136528 Score: 508
Period size: 215 Copynumber: 2.3 Consensus size: 212
10136028 TAAACAAGTT
* * * *
10136038 TTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGT-CAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATT
* * * *
10136103 AATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATCTCT
65 AATTAACAGGCCAAAACTTGTTT-GACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * ** * **
10136168 CGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTC
129 CGAGCATGGAATGCTCGAAAATTTA-TCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGA
* *
10136233 AGTTATAAAACAACTCGTGAAAG
193 AGTTA-AAAA-AA-TCATAAAAG
* * * * *
10136256 TTTGACAAGTTCGAAAGTTCGTCAAACAACCAAG-GAGATACAATTCTGACATAAATAAGTTCTT
1 TTTGACAAGTTCGGAAGTTCGTCAAA-AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATT
* *
10136320 AATTTAA-AGGCCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGGGAT-TTT
65 AA-TTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * * **
10136382 CCGCGCATGGAATGCTCGAAAAATTT-TTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACC
129 -CGAGCATGGAATGCTCG-AAAATTTATCA-AAAGAATGGATCAACTTGAATACTTTAAGGAACC
*
10136446 GAAGTTAAAGAAATCATAAAAG
191 GAAGTTAAAAAAATCATAAAAG
* * *
10136468 TTTGACAAGTTCGGATGTTCATCCAAGAAA-CAAGAGAGAAACAATTCTTACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGT-CAA-AAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10136529 ATTTTAAAAA
Statistics
Matches: 227, Mismatches: 38, Indels: 21
0.79 0.13 0.07
Matches are distributed among these distances:
212 30 0.13
213 30 0.13
214 8 0.04
215 79 0.35
216 6 0.03
217 45 0.20
218 29 0.13
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (212 bp):
TTTGACAAGTTCGGAAGTTCGTCAAAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTA
ATTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCTCG
AGCATGGAATGCTCGAAAATTTATCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAAGT
TAAAAAAATCATAAAAG
Found at i:10136573 original size:63 final size:62
Alignment explanation
Indices: 10136474--10136657 Score: 199
Period size: 62 Copynumber: 3.0 Consensus size: 62
10136464 AAAGTTTGAC
* * * *
10136474 AAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAAA
* * * * * * * *
10136537 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGTCTTTGAC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
* * * *
10136599 AAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTTT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTT
10136658 CGTTCGAGGA
Statistics
Matches: 98, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
62 51 0.52
63 47 0.48
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (62 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
Found at i:10136650 original size:62 final size:63
Alignment explanation
Indices: 10136468--10136653 Score: 205
Period size: 63 Copynumber: 3.0 Consensus size: 63
10136458 ATCATAAAAG
* * * * *
10136468 TTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * * * * * *
10136531 TTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGT-C
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
* * * *
10136593 TTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGT
10136654 TTTTCGTTCG
Statistics
Matches: 99, Mismatches: 23, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
62 48 0.48
63 51 0.52
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.25
Consensus pattern (63 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTAC
Found at i:10136899 original size:62 final size:62
Alignment explanation
Indices: 10136809--10137056 Score: 370
Period size: 62 Copynumber: 4.0 Consensus size: 62
10136799 ATCGTAAAAG
* * *
10136809 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * *
10136871 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGGGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * *
10136933 TTTGACAAGTTTGGAAGTTCGTCCAGGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10136995 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10137057 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 167 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10137411 original size:215 final size:216
Alignment explanation
Indices: 10137015--10137490 Score: 579
Period size: 215 Copynumber: 2.2 Consensus size: 216
10137005 TTGGACGTTT
* * * * * *
10137015 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTG
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAAC-GACCAAAACTTG
* * * ***
10137080 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAA
65 TTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAA
** * ** * *
10137145 ATTTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
129 ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
10137210 AAGTTTGACAAGTTCGAAAGTTC
194 AAGTTTGACAAGTTCGAAAGTTC
*
10137233 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTGAA-GACCAAAACTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAA-TT-AACGACCAAAACTT
10137296 GTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATGTTCAAA
64 GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTT-AAA
* *
10137359 AAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTATAAAAGAAATC
127 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATC
* * *
10137421 GTAAAAGTTTGACATGTTCGGATGTTC
190 GTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10137448 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTT
10137491 CTGACAAGCT
Statistics
Matches: 222, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 2 0.01
215 123 0.55
216 39 0.18
217 42 0.19
218 14 0.06
219 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (216 bp):
GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACGACCAAAACTTGT
TTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAAAT
TTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
GTTTGACAAGTTCGAAAGTTC
Found at i:10137542 original size:54 final size:54
Alignment explanation
Indices: 10137446--10137552 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
10137436 GTTCGGATGT
* *
10137446 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * * *
10137500 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAACTAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10137553 TTCGAAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Found at i:10137851 original size:62 final size:62
Alignment explanation
Indices: 10137759--10138006 Score: 401
Period size: 62 Copynumber: 4.0 Consensus size: 62
10137749 ATCGTAAAAG
* *
10137759 TTTGACAAGTTCT-GATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTT-TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10137821 TTTGACAAGTTTGGACGTTCATCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10137883 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10137945 TTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10138007 ATTAATTAAC
Statistics
Matches: 175, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
61 3 0.02
62 172 0.98
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10138328 original size:215 final size:212
Alignment explanation
Indices: 10137945--10138435 Score: 515
Period size: 215 Copynumber: 2.3 Consensus size: 212
10137935 TAAATAAGTT
* * * * *
10137945 TTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGGAAGTTCGT-CAAAAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTATT
* * * *
10138010 AATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATCTCT
65 AATTAACAGGCCAAAACTTGTTT-GACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * ** * **
10138075 CGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTC
129 CGAGCATGGAATGCTCGAAAATTTA-TCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGA
* * *
10138140 AGTTATAAAAGAACTCGTGAAAG
193 AG-T-T-AAAGAAATCATAAAAG
* * * *
10138163 TTTGACAAGTTCGAAAGTTCGTCAAACAACCAAG-GAGATACAATTCTAACATAAATAAGTTCTT
1 TTTGACAAGTTCGGAAGTTCGTCAAA-AACCAAGAGAGAAACAATTCTAACGTAAATAAGTTATT
* * *
10138227 AATTTAA-AGGCCAAAATTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTT
65 AA-TTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCT
* * * * **
10138290 CGCGCATGGAATGCTCGAAAAATTT-TTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCG
129 CGAGCATGGAATGCTCG-AAAATTTATCA-AAAGAATGGATCAACTTGAATACTTTAAGGAACCG
10138354 AAGTTAAAGAAATCATAAAAG
192 AAGTTAAAGAAATCATAAAAG
* * *
10138375 TTTGACAAGTTCGGATGTTCGTCCAAGAAA-CAAGAGAGAAACTATTCTTACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGT-CAA-AAACCAAGAGAGAAACAATTCTAACGTAAATAAGT
10138436 ATTTTAAAAA
Statistics
Matches: 227, Mismatches: 39, Indels: 19
0.80 0.14 0.07
Matches are distributed among these distances:
212 37 0.16
213 28 0.12
214 4 0.02
215 78 0.34
216 6 0.03
217 45 0.20
218 29 0.13
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (212 bp):
TTTGACAAGTTCGGAAGTTCGTCAAAAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTATTA
ATTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATCTCTCG
AGCATGGAATGCTCGAAAATTTATCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAAGT
TAAAGAAATCATAAAAG
Found at i:10138557 original size:62 final size:62
Alignment explanation
Indices: 10138375--10138560 Score: 205
Period size: 63 Copynumber: 3.0 Consensus size: 62
10138365 ATCATAAAAG
* * * *
10138375 TTTGACAAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACTATTCTTACGTAAATAAGTAT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC-ATTCTCACGTAAATAAGTAC
* * * * * *
10138438 TTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGT-C
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACA-TTCTCACGTAAATAAGTAC
* * *
10138500 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAAC-ATT-CTCACGTAAATAAGT
10138561 TTTTCGTTCG
Statistics
Matches: 101, Mismatches: 19, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
62 49 0.49
63 52 0.51
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACATTCTCACGTAAATAAGTAC
Found at i:10138806 original size:62 final size:62
Alignment explanation
Indices: 10138716--10138963 Score: 370
Period size: 62 Copynumber: 4.0 Consensus size: 62
10138706 ATCGTAAAAG
* * *
10138716 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * *
10138778 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGGGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * *
10138840 TTTGACAAGTTTGGAAGTTCGTCCAGGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10138902 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10138964 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 167 1.00
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10139318 original size:215 final size:216
Alignment explanation
Indices: 10138922--10139397 Score: 579
Period size: 215 Copynumber: 2.2 Consensus size: 216
10138912 TTGGACGTTT
* * * * * *
10138922 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTG
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAAC-GACCAAAACTTG
* * * ***
10138987 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAA
65 TTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAA
** * ** * *
10139052 ATTTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
129 ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
10139117 AAGTTTGACAAGTTCGAAAGTTC
194 AAGTTTGACAAGTTCGAAAGTTC
*
10139140 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTGAA-GACCAAAACTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAA-TT-AACGACCAAAACTT
10139203 GTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATGTTCAAA
64 GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTT-AAA
* *
10139266 AAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTATAAAAGAAATC
127 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATC
* * *
10139328 GTAAAAGTTTGACATGTTCGGATGTTC
190 GTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10139355 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTT
10139398 CTGACAAGCT
Statistics
Matches: 222, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 2 0.01
215 123 0.55
216 39 0.18
217 42 0.19
218 14 0.06
219 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (216 bp):
GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTAACGACCAAAACTTGT
TTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAAAT
TTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
GTTTGACAAGTTCGAAAGTTC
Found at i:10139449 original size:54 final size:54
Alignment explanation
Indices: 10139353--10139459 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
10139343 GTTCGGATGT
* *
10139353 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * * *
10139407 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAACTAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10139460 TTCGAAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Done.