Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 43 of 144
Found at i:10139758 original size:62 final size:61
Alignment explanation
Indices: 10139666--10139851 Score: 266
Period size: 62 Copynumber: 3.0 Consensus size: 61
10139656 ATCGTAAAAG
*
10139666 TTTGACAAGTTCT-GATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTT-TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10139728 TTTGACAAGTTTGGACGTTCATCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10139790 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCGCGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10139852 ATTAATTAAC
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
61 3 0.03
62 109 0.97
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10140337 original size:63 final size:61
Alignment explanation
Indices: 10140226--10140410 Score: 201
Period size: 62 Copynumber: 3.0 Consensus size: 61
10140216 AAGTTTGACG
* * * *
10140226 AGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAAA
1 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC-TACGTAAATAAGT-GTTTAAAA
* * * *
10140289 AGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAAACAGTATTC-ATGTAAATAAGTGTTTGACA
1 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA--ATTCTACGTAAATAAGTGTTTAAAA
* * * * *
10140351 AGTTCAAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTACCACGTAAATAAGTTTTTAA
1 AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTACGTAAATAAGTGTTTAA
10140411 TCCAAGGACC
Statistics
Matches: 103, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
60 3 0.03
61 1 0.01
62 52 0.50
63 43 0.42
65 4 0.04
ACGTcount: A:0.41, C:0.15, G:0.18, T:0.25
Consensus pattern (61 bp):
AGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTACGTAAATAAGTGTTTAAAA
Found at i:10140626 original size:62 final size:61
Alignment explanation
Indices: 10140559--10140807 Score: 381
Period size: 62 Copynumber: 4.0 Consensus size: 61
10140549 ATCGTAAAAG
* * *
10140559 TTTGACAACTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
*
10140621 TTTGACAAGTTTAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* *
10140683 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10140745 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10140807 T
1 T
10140808 CTAATTAACT
Statistics
Matches: 174, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
61 2 0.01
62 170 0.98
63 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10141127 original size:215 final size:213
Alignment explanation
Indices: 10140745--10141238 Score: 586
Period size: 215 Copynumber: 2.3 Consensus size: 213
10140735 TAAATAAGTT
* * * * *
10140745 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTTTCT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10140810 AATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAACTATTTTGACCAAATGATGTGATTTCTC
66 AATTAACAGGCCAAAACTTGTTT-GACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC
*** * * **
10140875 GAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCATCTTGAATGCTTTAAGGAACCTCA
130 GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAA
* * *
10140940 GTTATAAAAGAACTCGTGAAAG
195 G-T-T-AAAGAAATCATAAAAG
* * * *
10140962 TTTGACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10141026 AATTTAA-AGGCCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-T
66 AA-TTAACAGGCCAAAACTTGTTTGACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCT
* * **
10141088 CTGAGCATGGAATGTTCAAAAAATTT-CT-AGAAGGAATGGATTAACTTGAATACTTTTTGGAAC
129 C-GAGCATGGAATGTT-AAAAAATTTACTCA-AAAGAATGGATCAACTTGAATACTTTAAGGAAC
10141151 CGAAGTTAAAGAAATCATAAAAG
191 CGAAGTTAAAGAAATCATAAAAG
* * * *
10141174 TTAGACGAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10141239 GACAAGTTCG
Statistics
Matches: 236, Mismatches: 35, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
212 41 0.17
213 29 0.12
214 13 0.06
215 72 0.31
216 49 0.21
217 32 0.14
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (213 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGGCCAAAACTTGTTTGACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCG
AGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAAG
TTAAAGAAATCATAAAAG
Found at i:10141249 original size:54 final size:54
Alignment explanation
Indices: 10141190--10141303 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
10141180 GAGTTCGGAT
* * *
10141190 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * *
10141244 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10141298 GTTCGT
1 GTTCGT
10141304 AAGTTCGTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (54 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Found at i:10141590 original size:62 final size:61
Alignment explanation
Indices: 10141507--10141751 Score: 366
Period size: 62 Copynumber: 4.0 Consensus size: 61
10141497 CGTAAATGTC
* * *
10141507 TGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAATTAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTTTT
*
10141569 TTACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTT
* *
10141631 TGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTT
* * *
10141693 TGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10141752 GCTAATTAAC
Statistics
Matches: 170, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
60 2 0.01
61 21 0.12
62 145 0.85
63 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTTTT
Found at i:10142083 original size:215 final size:213
Alignment explanation
Indices: 10141694--10142183 Score: 526
Period size: 215 Copynumber: 2.3 Consensus size: 213
10141684 ATAAGTTTTT
* * * * * * **
10141694 GACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTTGCTAAT
1 GACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * *
10141758 TAACAGTCCAAAACTTGTTTGGTCAAAATGACAACTATTTTGACCAAATGATGTGATTTCTCGAG
66 TAACAGGCCAAAACTTGTTT-GACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAG
**** ** * ***
10141823 CATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTGAGGAACTTCAGTT
130 CATGGAATGTCAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTGAGGAACCGAAG-T
* * * *
10141888 ATAAAAGAACTCGTGAAAGTTT
194 -T-AAAGAAATCATAAAAGTTA
* *
10141910 GACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATACAATTCTCACGTAAATAAGTTTTTAAT
1 GACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-
10141974 TTAA-AGGCCAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-TCTG
65 TTAACAGGCCAAAACTTGTTTGACAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCTC-G
* * **
10142036 AGCATGGAATGTACAAAAAATTT-CT-AGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGA
128 AGCATGGAATGT-CAAAAAATTTACTCA-AAAGAATGGATCAACTTGAATACTTTGAGGAACCGA
10142099 AGTTAAAGAAATCATAAAAGTTA
191 AGTTAAAGAAATCATAAAAGTTA
* * * * *
10142122 GACGAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 GACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10142184 GACAAGTTCG
Statistics
Matches: 229, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
212 41 0.18
213 29 0.13
214 13 0.06
215 71 0.31
216 71 0.31
217 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (213 bp):
GACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
TAACAGGCCAAAACTTGTTTGACAAAATGACAACTATTTAGACCAAATGATGTGATTTCTCGAGC
ATGGAATGTCAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTGAGGAACCGAAGTTA
AAGAAATCATAAAAGTTA
Found at i:10142194 original size:54 final size:54
Alignment explanation
Indices: 10142135--10142248 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
10142125 GAGTTCGGAT
* * *
10142135 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * *
10142189 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10142243 GTTCGT
1 GTTCGT
10142249 AAGTTCGTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (54 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Found at i:10142610 original size:62 final size:62
Alignment explanation
Indices: 10142450--10142693 Score: 377
Period size: 62 Copynumber: 4.0 Consensus size: 62
10142440 CGTAAATGTC
* * *
10142450 TGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
10142512 T-ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-TAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AACTAAGTTTT
* * *
10142573 TGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
* * *
10142635 TGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
10142694 GCTAATTAAC
Statistics
Matches: 171, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
61 81 0.47
62 90 0.53
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (62 bp):
TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
Found at i:10142674 original size:123 final size:123
Alignment explanation
Indices: 10142450--10142693 Score: 384
Period size: 123 Copynumber: 2.0 Consensus size: 123
10142440 CGTAAATGTC
* * *
10142450 TGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTAC
1 TGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAC
10142515 AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-TAAGTTTT
66 AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AACTAAGTTTT
**
10142573 TGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
1 TGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-A
* * *
10142638 CAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTT
65 CAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
10142694 GCTAATTAAC
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
122 2 0.02
123 79 0.71
124 30 0.27
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (123 bp):
TGACAAGTTCAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAC
AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTT
Found at i:10143047 original size:215 final size:217
Alignment explanation
Indices: 10142633--10143128 Score: 596
Period size: 215 Copynumber: 2.3 Consensus size: 217
10142623 TAAATAAGTT
* * * * * * **
10142633 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTTGCT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10142697 AATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAACTATTTTGACCAAATGATGTGATTTCTC
66 AATTAACAGGCCAAAACTTGTTTGGTCAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC
*** ** **
10142762 GAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTGAGGAACTTCA
131 GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATGCTTTGAGGAACTGAA
* *
10142827 GTTATAAAAGAACTCGTGAAAG
196 GTTATAAAAGAAATCGTAAAAG
* *
10142849 TTTGACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10142913 AATTTAA-AGGCCAAAACTTGTTT-G-CAAAATGACAAACTATTTAGACCAAATGATGTGATTT-
66 AA-TTAACAGGCCAAAACTTGTTTGGTCAAAATGAC-AACTATTTAGACCAAATGATGTGATTTC
** * * *
10142974 TCTGAGCATGGAATGTTCAAAAAATTT-CT-AGATGGAATGGATTAACTTTAATGCATTT-TGGA
129 TC-GAGCATGGAATGTT-AAAAAATTTACTCA-AAAGAATGGATCAACTTGAATGC-TTTGAGGA
10143036 ACTGAAGTTATAAAAGAAATCGTAAAAG
190 ACTGAAGTTATAAAAGAAATCGTAAAAG
* * * * *
10143064 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10143129 GACAAGTTCG
Statistics
Matches: 239, Mismatches: 33, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 12 0.05
215 119 0.50
216 104 0.44
217 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (217 bp):
TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGGCCAAAACTTGTTTGGTCAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC
GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATGCTTTGAGGAACTGAA
GTTATAAAAGAAATCGTAAAAG
Found at i:10143139 original size:54 final size:54
Alignment explanation
Indices: 10143080--10143192 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
10143070 AAGTTCGGAT
* * * *
10143080 GTTCGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * *
10143134 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10143188 GTTCG
1 GTTCG
10143193 AAAGTTCGTC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (54 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Found at i:10143505 original size:54 final size:53
Alignment explanation
Indices: 10143413--10143524 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 53
10143403 AGTTCGGATA
* * * *
10143413 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATTAGTTTTTGACATG
1 TTCGTCCAAGAACCAAGAGAGAAACAACTCTTA-GTAAATAAGTCTTTGACAAG
*
10143467 TTCGTCCAAGAACCAAGAGTGAAACAGTACTCTT-GTAAATAAGTCTTTGACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACA--ACTCTTAGTAAATAAGTCTTTGACAAG
10143521 TTCG
1 TTCG
10143525 AAAGTTTGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 46 0.90
56 5 0.10
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (53 bp):
TTCGTCCAAGAACCAAGAGAGAAACAACTCTTAGTAAATAAGTCTTTGACAAG
Found at i:10143589 original size:332 final size:331
Alignment explanation
Indices: 10142849--10143916 Score: 1441
Period size: 332 Copynumber: 3.2 Consensus size: 331
10142839 CTCGTGAAAG
* *
10142849 TTTGACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATA-CAATT-CTCACGTAAATAAGTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACCAATTGC-CACGTAAATAAGTTT
* * * * * * *
10142911 TTAATTTAAAGG-CCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGTGATTTT
64 TTAA-TTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTC
* * * * ** * * *
10142975 CTGAGCATGGAATGTTCAAAAAATTTCTAGATGGAATGGATTAACTTTA-ATGCATTT-TGGAAC
127 CCGAGCATGGGATGTTCGAAAAATTTCTCGAAAGAATGGATCATC-TTAGATGC-TTTCAGGAAC
*
10143038 TGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
190 CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
*
10143103 AATAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
255 AACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
*
10143168 TGTAAATAAGTG
320 TGTAAATAAGTC
*
10143180 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAACTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
10143245 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCCCG
66 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTCCCG
* * * *
10143310 AGCATGGGATGTTCGAAAAATTGCTCGAACGAATAGATCATCTTAGATACTTTCAGGAACCGAAG
130 AGCATGGGATGTTCGAAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAAG
* *
10143375 TTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACAA
195 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
* * *
10143440 TTCTTACGTAAATTAGTTTTTGACATGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCTTGTAA
260 TTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAA
10143505 ATAAGTC
325 ATAAGTC
*
10143512 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
** * * *
10143577 CGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTTGACAAAATTATGCGATTACCCG
66 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATT-CCCG
*
10143642 AGCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATCTTGGATGCTTTCAGGAACCGAA
130 AGCATGGGATGTTCG-AAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAA
*
10143707 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACA
194 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * * *
10143772 ATTCTCACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATT
259 ATTCTTACGTAAATAAGTTTTTGACAAGTTC--------GTCCAAGAACCAAGAGTGAAACAGTA
* * *
10143836 CTCACGTAATTAAGTT
316 CTCATGTAAATAAGTC
* * * * * * *
10143852 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAA-TCCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTT
10143916 T
65 T
10143917 GACAAGTTTA
Statistics
Matches: 656, Mismatches: 64, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
331 47 0.07
332 384 0.59
333 135 0.21
339 2 0.00
340 82 0.12
341 6 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (331 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTCCCGA
GCATGGGATGTTCGAAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAAGT
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
TAAGTC
Found at i:10143840 original size:61 final size:62
Alignment explanation
Indices: 10143729--10144153 Score: 611
Period size: 62 Copynumber: 6.9 Consensus size: 62
10143719 ATCGTAAAAG
* * *
10143729 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10143791 TTTGACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10143852 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10143914 TTTGACAAGTTT-AAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10143975 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10144037 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10144099 TTTGACAAGTTTGGATGTTTGTCTAAGAACTAAGGGAGAAATAATTCTCACGTAA
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10144154 CTAATTTATT
Statistics
Matches: 324, Mismatches: 37, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
61 110 0.34
62 214 0.66
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10143948 original size:123 final size:123
Alignment explanation
Indices: 10143729--10144153 Score: 665
Period size: 123 Copynumber: 3.4 Consensus size: 123
10143719 ATCGTAAAAG
* * * * * *
10143729 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
** * *
10143794 GACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
66 GACAAGTT-TAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10143852 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
10143917 GACAAGTTTAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
66 GACAAGTTTAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10143975 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
* *
10144040 GACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAAATAAGTT
66 GACAAGTTTA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * *
10144099 TTTGACAAGTTTGGATGTT-TGTCTAAGAACTAAGGGAGAAATAATTCTCACGTAA
1 TTTGACAAGTTTGGAAGTTCT-TCTAAGAACTAAGAGAGAAACAATCCTCACGTAA
10144154 CTAATTTATT
Statistics
Matches: 283, Mismatches: 16, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
122 10 0.04
123 178 0.63
124 95 0.34
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (123 bp):
TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTT
GACAAGTTTAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10144516 original size:213 final size:218
Alignment explanation
Indices: 10144134--10144594 Score: 500
Period size: 213 Copynumber: 2.1 Consensus size: 218
10144124 AGAACTAAGG
* * * *
10144134 GAGAAATAATTCTCACGTAACTAA-TTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGA
1 GAGAAACAATTCTCACGTAAATAAGTTT-TTAATTAACAGGCCAAAACTTGTTTGGACAAAATGA
* * * * * *
10144198 CAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGA
65 CAAACTATTTAGACCAAATGATGTGATTTCTCGAACATGGAATGCTCGAAAATTTGCTTAAAGGA
** * * * *
10144263 ATGGATCGTCTTGAAAGCTTTAAGGAACCTCAGTTATAAAAGAACTCGT-GAAAGTTTG-TCAAG
130 ATGGATCAACTTGAAAGCTTTAAGGAACCTAAGTTATAAAAGAAAT-ATAAAAAGTTTGAT-AAG
*
10144326 TTCGAAAGTTCGTCCAACAACCAAG-
193 TTCGAAAGGTCGTCCAACAACCAAGA
* *
10144351 GAGATACAATTCTCACGTAAATAAGTTTTTAATTTTA-AGGCCAAAACTTG-TT-GACAAAATGA
1 GAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGGCCAAAACTTGTTTGGACAAAATGA
10144413 CAAACTATTTAGACCAAATGATG-GATTT-TCGAACATGGAATGCTCGAAAAATTT-C-TAGAAG
65 CAAACTATTTAGACCAAATGATGTGATTTCTCGAACATGGAATGCTCG-AAAATTTGCTTA-AAG
* *
10144474 GAATGGATTAACTTGAATA-CATTT-TGGAA-CTGAAGTTATAAAAGAAATATAAAAAGTTTGAT
128 GAATGGATCAACTTGAA-AGC-TTTAAGGAACCT-AAGTTATAAAAGAAATATAAAAAGTTTGAT
* * * *
10144536 ATGTTCGGATGGTCGTCCAAGAACCAAGA
190 AAGTTCGAAAGGTCGTCCAACAACCAAGA
* *
10144565 GAGAAACAATTCTTACGTAAATAAGGTTTT
1 GAGAAACAATTCTCACGTAAATAAGTTTTT
10144595 CGACAAGTTC
Statistics
Matches: 206, Mismatches: 28, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
212 5 0.02
213 82 0.40
214 43 0.21
215 31 0.15
216 2 0.01
217 37 0.18
218 6 0.03
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (218 bp):
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTGTTTGGACAAAATGAC
AAACTATTTAGACCAAATGATGTGATTTCTCGAACATGGAATGCTCGAAAATTTGCTTAAAGGAA
TGGATCAACTTGAAAGCTTTAAGGAACCTAAGTTATAAAAGAAATATAAAAAGTTTGATAAGTTC
GAAAGGTCGTCCAACAACCAAGA
Found at i:10144614 original size:55 final size:57
Alignment explanation
Indices: 10144548--10144686 Score: 158
Period size: 55 Copynumber: 2.4 Consensus size: 57
10144538 GTTCGGATGG
* *
10144548 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAG-G-TT-TTCGACAAGT
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTTATTCGA-AAGT
* * *
10144603 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGCTTGACAAGTTCGAAAGT
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTT----A-TTCGAAAGT
10144665 TCGTCCAAGAACCAAGAGAGAA
1 TCGTCCAAGAACCAAGAGAGAA
10144687 CCATTTGCCA
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
55 37 0.53
56 1 0.01
57 2 0.03
62 25 0.36
63 5 0.07
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (57 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTTATTCGAAAGT
Found at i:10145038 original size:62 final size:61
Alignment explanation
Indices: 10144862--10145169 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
10144852 ATCGAAAAAG
* *
10144862 TTGACAAGTTCGGATGTTCGTCCAAGAACCAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACC-AAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10144924 TTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10144985 TTGACAAGTTTGGAAGTTCGTCTCTAAGAA-TAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTC-C-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TT
10145048 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TT
** * * * * *
10145110 TTGACAAG-TTGGGCGTTTGTCTAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAGTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10145170 ATTATTAACA
Statistics
Matches: 227, Mismatches: 15, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
60 2 0.01
61 97 0.43
62 99 0.44
63 29 0.13
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (61 bp):
TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10145533 original size:208 final size:214
Alignment explanation
Indices: 10145139--10145595 Score: 542
Period size: 209 Copynumber: 2.2 Consensus size: 214
10145129 TCTAAGAACT
* * * * *
10145139 AAGAGAGAAATAATTCTCACGTAACTAAGTTATTATTAACAGTCCAAAACTTGTTTGGTCAAAAT
1 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTAACAGGCCAAAACTTGTTT-GACAAAAT
* *** *
10145204 GACAAACTATTTTACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAACTTGCGTAAGGA
65 GACAAACTATTTTACCAAATGATGGGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGTAAGGA
* ** * **
10145269 ATGGGTCGTCTTCAATGCTTTAAGGAACCTCAGTTATAAAAGAAATCGTGAAAGTTTGA-AAGTT
130 ATGGATCAACTTCAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTT
10145333 CGAAAGTTCG-CCAACAACC
195 CGAAAGTTCGTCCAACAACC
*
10145352 AAG-GAGATACAA-TCTCACGTAAATAAGTTTTTAATTAA-AGGCCAAAACTTG-TT-ACAAAAT
1 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-ATTAACAGGCCAAAACTTGTTTGACAAAAT
*
10145412 GACAAACTA-TTTAGCCCAAATGATGGGATTT-TCGAGCATGGAATGTTCAAAAAATTTC-TAGA
65 GACAAACTATTTTA--CCAAATGATGGGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGT--A
* * *
10145474 AGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTATAAAAGAAATCGT-AAAGTTTGAC
126 AGGAATGGATCAACTTCAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATCGTGAAAGTTTGAC
* * *
10145537 AAGTTCGGATGTTCGTCCAAGAACC
190 AAGTTCGAAAGTTCGTCCAACAACC
*
10145562 AAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10145596 GACAAGTTCG
Statistics
Matches: 208, Mismatches: 26, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
207 5 0.02
208 46 0.22
209 69 0.33
210 16 0.08
211 38 0.18
212 31 0.15
213 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (214 bp):
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTATTAACAGGCCAAAACTTGTTTGACAAAATG
ACAAACTATTTTACCAAATGATGGGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGTAAGGAA
TGGATCAACTTCAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTC
GAAAGTTCGTCCAACAACC
Found at i:10146067 original size:61 final size:61
Alignment explanation
Indices: 10145880--10146187 Score: 383
Period size: 61 Copynumber: 5.0 Consensus size: 61
10145870 GTTAATTAAT
* * * * *
10145880 AACTTAGTTACGTGAGAATTGTTTCTCTCCTT-AGTTATTGACAAACGTCCAAACTAGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCT-CTTGA-TTCTTGACGAACATCCAAACTTGTCAAA
* *
10145942 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TTGATTCTT-GACGAACATCCAAACTTGTCAAA
*
10146005 AACTTATTTACGTGAGAATTGTTTCTCTCTT-ATTCTTAGACGAAC-TTCAAACTTGTCAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT-GACGAACATCCAAACTTGTC-AAA
* * * * *
10146066 AACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGACGAACATCCAAACTTGTCAAA
*
10146127 AACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TTCTTGGA-GAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TTGATTCTT-GACGAACATCCAAACTTGTCAAA
10146188 CTTTTTCGAT
Statistics
Matches: 220, Mismatches: 18, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
60 11 0.05
61 105 0.48
62 55 0.25
63 49 0.22
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGACGAACATCCAAACTTGTCAAA
Found at i:10146478 original size:53 final size:52
Alignment explanation
Indices: 10146390--10146499 Score: 143
Period size: 53 Copynumber: 2.1 Consensus size: 52
10146380 GACGAACTTT
* *
10146390 CGAACTTGTCAAACACTTTTTACATGAGTACTG-TTTCACTCTTGGTTCTTGGA
1 CGAACTTGTCAAAAACTTTTTACATGAGAACTGTTTTC-CTC-TGGTTCTTGGA
* *
10146443 CGAACTTGTCAAAAACTTATTTACGT-AGAATTGTTTTCCTCTGGTTCTTGGA
1 CGAACTTGTCAAAAACTT-TTTACATGAGAACTGTTTTCCTCTGGTTCTTGGA
10146495 CGAAC
1 CGAAC
10146500 ATCCGAACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
52 16 0.31
53 25 0.49
54 10 0.20
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (52 bp):
CGAACTTGTCAAAAACTTTTTACATGAGAACTGTTTTCCTCTGGTTCTTGGA
Found at i:10146652 original size:328 final size:332
Alignment explanation
Indices: 10146002--10146731 Score: 846
Period size: 329 Copynumber: 2.2 Consensus size: 332
10145992 CAAACTTGTC
* * * *
10146002 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTATTCTTAGACGAAC-TTCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGTTCTTGGACGAACTTTCGAACTTGTC-AA
* * * * *
10146065 AAACTTAATTACGTTAGAATTGTTTCTCTCTTGGTTCTTGACTAACATCCGAACTTGTCAAAAAC
64 ACACTTAATTACATGAGAACTGTTTCACTCTTGGTTCTTG----ACA-CCGAACTTGTCAAAAAC
* *
10146130 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGAGAACATCCGAACTTGTCAAACTTTTTC
124 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACATCCGAACTTGTCAAACTTTTAC
* * * *
10146195 GATTTCTTTTACAACTTCAGTTCCTGAAAGTATCCAAGATGATCCATTCTTCGAGCAATTGTTCG
189 GATTTCTTTTACAACTTCAGGTCCTAAAAGTATCCAAGATAATCCATTCTTCGAGAAATTGTTCG
* * *
10146260 AACATCCTATGCTCGGGAAGTCGCATAATTGGTCTAAATAAGTTATGCCTTTTTGTAAACAAGTT
254 AACATCCTATGCTCGGAAAATCGCATAATTGGTCTAAATAAGTTATGCCATTTTGTAAACAAGTT
* *
10146325 TTGGTC-TTGAATT
319 TTGGCCTTTCAATT
10146338 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10146403 CACTT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTG-GA-CGAACTTGTCAAAAACTTATTT
65 CACTTAATTACATGAGAACTGTTTCACTCTTGGTTCTTGACACCGAACTTGTCAAAAACTTATTT
10146465 ACGT-AGAATTGTTT-TC-CTCTGGTTCTTGGACGAACATCCGAACTTGTCAAAACTTTTACGAT
130 ACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGA-GAACATCCGAACTTGTC-AAACTTTTACGAT
* * * * * *
10146527 TTCTTTTATAACTTC-GGTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGA
192 TTCTTTTACAACTTCAGGTCCTAAAA-GTATCCAAGATAATCCATT-CTTCGAGAAATTGTTCGA
* * * *
10146590 ACATTCC-ATTCTCGGAAAAATC-CATCATTTGGTCTAAAT-AGTT-TGTCATTTTGTCAACAAG
255 ACA-TCCTATGCTCGG-AAAATCGCAT-AATTGGTCTAAATAAGTTATGCCATTTTGTAAACAAG
10146651 TTTTGGCCTTTCAATT
317 TTTTGGCCTTTCAATT
* * * *
10146667 AAAAACTTATTTACGTGACAATT-GTATCTC-CTTTGTTGTTGGACGAACTTTTGAACTCGTCAA
1 AAAAACTTATTTACGTGGCAATTGGT-TCTCTC-TTGTTCTTGGACGAACTTTCGAACTTGTCAA
10146730 AC
64 AC
10146732 TTTACGAGTT
Statistics
Matches: 343, Mismatches: 37, Indels: 36
0.82 0.09 0.09
Matches are distributed among these distances:
326 2 0.01
327 15 0.04
328 100 0.29
329 117 0.34
330 19 0.06
331 1 0.00
335 1 0.00
336 58 0.17
337 19 0.06
338 11 0.03
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (332 bp):
AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGTTCTTGGACGAACTTTCGAACTTGTCAAAC
ACTTAATTACATGAGAACTGTTTCACTCTTGGTTCTTGACACCGAACTTGTCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTACAACTTCAGGTCCTAAAAGTATCCAAGATAATCCATTCTTCGAGAAATTGTTCGAACATCC
TATGCTCGGAAAATCGCATAATTGGTCTAAATAAGTTATGCCATTTTGTAAACAAGTTTTGGCCT
TTCAATT
Found at i:10147000 original size:62 final size:62
Alignment explanation
Indices: 10146886--10147493 Score: 721
Period size: 62 Copynumber: 10.0 Consensus size: 62
10146876 GTTAATTAAT
* * * * * *
10146886 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGAC-AAATGCCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
* *
10146948 AACTGATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACGTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10147010 AATTTATTTACGTGAGAATTGTTTCTCTCTT-ATTGCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10147072 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGT-AAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10147133 AAC-T-TTTACGTGAGAA-TGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AAA
* * *
10147193 AACTTATTTACGTGAG-ATTGTTTCTCTCCTGGTTCTTAAGA-GAACTTCCAAACATGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCAAACTTGTCAAA
* * * *
10147254 AACTTATTTACGTCGAGAATTTTTTCTTTCTTGG-TGTTGAAACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGT-GAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTCCAAACTTGTCAAA
* * *
10147317 AACTTATTTACGTGAGAATTGTTTCCCTCTTAGTTCCTGGAC-AACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10147378 AACTTATTTACGTTAGAATTGTTTCTCTCTTGG-TCTTGG-CTAACATCCGAACTTGTC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10147437 AACTTATTTACGTGAGAA-T-TTTCTCT-TT-GTT-TTGGACAAACATCCGAACCTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10147494 CTTTTACGAT
Statistics
Matches: 478, Mismatches: 50, Indels: 41
0.84 0.09 0.07
Matches are distributed among these distances:
55 5 0.01
56 19 0.04
57 9 0.02
58 39 0.08
59 31 0.06
60 26 0.05
61 75 0.16
62 219 0.46
63 55 0.12
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10147331 original size:245 final size:245
Alignment explanation
Indices: 10146886--10147462 Score: 780
Period size: 245 Copynumber: 2.4 Consensus size: 245
10146876 GTTAATTAAT
* * * * *
10146886 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGACAA-ATGCCCAAACTTGTCAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAACAT--CCGAACTTGTCAAAAA
* * * * *
10146950 CTGATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACGTGTCAAAAATTT
64 CTTATTTACGTGAG-ATTGTTTCTCTCCTGGTTCTTAGACGAACTTCCAAACATGTCAAAAACTT
* *
10147015 ATTTACGTGAGAATTGTTTCTCTCTTATTGCTTAGACGAACTTCCAAACTTGTCAAAAACTTAAT
128 ATTTACGTGAGAATTGTTTCTCTCTTAGTGCTTAAACGAACTTCCAAACTTGTCAAAAACTTAAT
* * * *
10147080 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGT-AAA
193 TACGTGAGAATTGTTTCCCTCTTAGTTCCTGGAC-AACATCCAAACTTGTCAAA
10147133 AAC-T-TTTACGTGAGAA-TGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACATCCGAACTTGTC-AAAAA
10147195 CTTATTTACGTGAGATTGTTTCTCTCCTGGTTCTTAAGA-GAACTTCCAAACATGTCAAAAACTT
64 CTTATTTACGTGAGATTGTTTCTCTCCTGGTTCTT-AGACGAACTTCCAAACATGTCAAAAACTT
* * *
10147259 ATTTACGTCGAGAATTTTTTCTTTCTTGGTG-TTGAAACGAACTTCCAAACTTGTCAAAAACTTA
128 ATTTACGT-GAGAATTGTTTCTCTCTTAGTGCTT-AAACGAACTTCCAAACTTGTCAAAAACTTA
* *
10147323 TTTACGTGAGAATTGTTTCCCTCTTAGTTCCTGGACAACTTCCAAACTTGTCAAA
191 ATTACGTGAGAATTGTTTCCCTCTTAGTTCCTGGACAACATCCAAACTTGTCAAA
*
10147378 AACTTATTTACGTTAGAATTGTTTCTCTCTTGG-TCTTGG-CTAACATCCGAACTTGTC-AAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACATCCGAACTTGTCAAAAAC
*
10147440 TTATTTACGTGAGAAT-TTTCTCT
65 TTATTTACGTGAGATTGTTTCTCT
10147463 TTGTTTTGGA
Statistics
Matches: 296, Mismatches: 24, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
243 7 0.02
244 116 0.39
245 118 0.40
246 21 0.07
247 20 0.07
248 14 0.05
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (245 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAACATCCGAACTTGTCAAAAACT
TATTTACGTGAGATTGTTTCTCTCCTGGTTCTTAGACGAACTTCCAAACATGTCAAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTAGTGCTTAAACGAACTTCCAAACTTGTCAAAAACTTAATTAC
GTGAGAATTGTTTCCCTCTTAGTTCCTGGACAACATCCAAACTTGTCAAA
Found at i:10147712 original size:61 final size:60
Alignment explanation
Indices: 10147643--10148316 Score: 564
Period size: 61 Copynumber: 11.1 Consensus size: 60
10147633 TCCTTGAATT
* ***
10147643 AAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTC-TGGACAAACTTTTGAACTTGTCA
1 AAAACTTATTTACGTGG-AATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCAAACTTGTCA
* * * * * *
10147704 AACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG---A----CGAACTTGTC-
1 AAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACAACTTCCAAACTTGTCA
** *
10147757 AAAACTTATTTACGTAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACGTGTC-
1 AAAACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCAAACTTGTCA
* * * * *
10147817 AAAATTTATTTACTTGGAGAATTGTTTCTCTCTT-ATTGCTTAGACGACTTCCAAACTTGTCA
1 AAAACTTATTTACGT-G-GAATTGTTTCTCTCTTGGTT-CTTGGACAACTTCCAAACTTGTCA
* * * *
10147879 AAAAC-TAATTACGTGAGAATATAATTTGTCTCTCTTGGTTTCTTGGACTAACATCCGAACTTGT
1 AAAACTTATTTACGTG-GAAT-T--GTT-TCTCTCTTGG-TTCTTGGAC-AACTTCCAAACTTGT
*
10147943 TA
59 CA
* * *
10147945 AAAACTTAATTTACGTGAGAA-TGTTTCTCT-TTGGTTCTTGGACGACATCCGAACTTGT-A
1 AAAACTT-ATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACAACTTCCAAACTTGTCA
* * * *
10148004 AAAACTTATTTACGT-GAGAGTGTTTCTCTCTTGGTTCTTAGAGGAACTTCCAAACATGTCA
1 AAAACTTATTTACGTGGA-ATTGTTTCTCTCTTGGTTCTTGGA-CAACTTCCAAACTTGTCA
* * *
10148065 AAAACTTA-TTACGTCAGAATTTTTTCT-TCTTGGTTGTTGGAGACGAACTTCCAAACTTGTCA
1 AAAACTTATTTACGT-GGAATTGTTTCTCTCTTGGTTCTT-G-GAC-AACTTCCAAACTTGTCA
* *
10148127 AAAACTTATTTACGTGAGAATTGTTTCCCTCTTAGTTC-TGGACAAACTTCCAAACTTGTCA
1 AAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCAAACTTGTCA
* * *
10148188 AAAACTTATTTACGTTAGAATTGTTTCTCTC-TGGTTCTTGGACTAACATCCGAACTTGTCA
1 AAAACTTATTTACG-TGGAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCAAACTTGTCA
* * * *
10148249 AAAACTTATTTACGTGAGAATTTTTTCTCT-TTGGTTCTTGGACAAACATCCGAACCTGTC-
1 AAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCAAACTTGTCA
10148309 AAAACTTA
1 AAAACTTA
10148317 CGATTTTCTT
Statistics
Matches: 508, Mismatches: 65, Indels: 81
0.78 0.10 0.12
Matches are distributed among these distances:
52 21 0.04
53 13 0.03
54 9 0.02
56 3 0.01
57 1 0.00
58 18 0.04
59 19 0.04
60 82 0.16
61 199 0.39
62 63 0.12
63 23 0.05
64 17 0.03
65 6 0.01
66 21 0.04
67 1 0.00
68 12 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (60 bp):
AAAACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGACAACTTCCAAACTTGTCA
Found at i:10147789 original size:52 final size:54
Alignment explanation
Indices: 10147694--10147805 Score: 165
Period size: 52 Copynumber: 2.1 Consensus size: 54
10147684 ACAAACTTTT
**
10147694 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
1 GAACTTGTCAAACACTTATTTACATGAAAACTGTTTCACTCTTGGTTCTTGGAC
* * *
10147748 GAACTTGTCAAA-ACTTATTTACGT-AAAATTGTTTCTCTCTTGGTTCTTGGAC
1 GAACTTGTCAAACACTTATTTACATGAAAACTGTTTCACTCTTGGTTCTTGGAC
10147800 GAACTT
1 GAACTT
10147806 CCAAACGTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
52 30 0.57
53 11 0.21
54 12 0.23
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (54 bp):
GAACTTGTCAAACACTTATTTACATGAAAACTGTTTCACTCTTGGTTCTTGGAC
Found at i:10147820 original size:60 final size:62
Alignment explanation
Indices: 10147749--10148316 Score: 630
Period size: 61 Copynumber: 9.3 Consensus size: 62
10147739 TTCTTGGACG
*
10147749 AACTTGTC-AAAACTTATTTACGT-AAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * * *
10147809 AACGTGTC-AAAATTTATTTACTTGGAGAATTGTTTCTCTCTT-ATTGCTTAGACG-ACTTCCA
1 AACTTGTCAAAAACTTATTTACGT-GAGAATTGTTTCTCTCTTGGTT-CTTGGACGAACTTCCA
* * * *
10147870 AACTTGTCAAAAAC-TAATTACGTGAGAATATAATTTGTCTCTCTTGGTTTCTTGGACTAACATC
1 AACTTGTCAAAAACTTATTTACGTGAGAAT-T--GTT-TCTCTCTTGG-TTCTTGGACGAACTTC
*
10147934 CG
61 CA
* * *
10147936 AACTTGTTAAAAACTTAATTTACGTGAGAA-TGTTTCTCT-TTGGTTCTTGGACG-ACATCCG
1 AACTTGTCAAAAACTT-ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * *
10147996 AACTTGT-AAAAACTTATTTACGTGAG-AGTGTTTCTCTCTTGGTTCTTAGAGGAACTTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
10148056 AACATGTCAAAAACTTA-TTACGTCAGAATTTTTTCT-TCTTGGTTGTTGGAGACGAACTTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G-GACGAACTTCCA
* * *
10148118 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCCCTCTTAGTTC-TGGACAAACTTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
10148179 AACTTGTCAAAAACTTATTTACGTTAGAATTGTTTCTCTC-TGGTTCTTGGACTAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
* * * *
10148240 AACTTGTCAAAAACTTATTTACGTGAGAATTTTTTCTCT-TTGGTTCTTGGACAAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
*
10148301 AACCTGTC-AAAACTTA
1 AACTTGTCAAAAACTTA
10148317 CGATTTTCTT
Statistics
Matches: 436, Mismatches: 48, Indels: 48
0.82 0.09 0.09
Matches are distributed among these distances:
57 1 0.00
58 20 0.05
59 20 0.05
60 82 0.19
61 173 0.40
62 59 0.14
63 24 0.06
64 17 0.04
65 6 0.01
66 21 0.05
67 1 0.00
68 12 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
Found at i:10148533 original size:62 final size:57
Alignment explanation
Indices: 10148467--10148644 Score: 166
Period size: 54 Copynumber: 3.0 Consensus size: 57
10148457 TGAATTAAAA
*
10148467 ACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAAC
1 ACTTATTTACGTGG-AATTGTTTCTCTCTTGGTTCTTGGAC-AAC---TGAACTTGTCAAAC
* * * * *
10148529 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG---AC-GAACTTGTCAAAA
1 ACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACAACTGAACTTGTCAAAC
*
10148583 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 ACTTATTTACGT-GGAATTGTTTCTCTCTTGGTTCTTGGAC-AAC-T--GAACTTGTCAAAC
10148645 TTTTACGATT
Statistics
Matches: 94, Mismatches: 12, Indels: 20
0.75 0.10 0.16
Matches are distributed among these distances:
54 45 0.48
58 4 0.04
62 44 0.47
63 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.39
Consensus pattern (57 bp):
ACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGACAACTGAACTTGTCAAAC
Found at i:10148575 original size:54 final size:54
Alignment explanation
Indices: 10148516--10148627 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
10148506 ACAAACTTTT
* * *
10148516 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
1 GAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGAC
* * *
10148570 GAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC
1 GAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGAC
10148624 GAAC
1 GAAC
10148628 ATCCGAACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
GAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGAC
Found at i:10149292 original size:61 final size:62
Alignment explanation
Indices: 10149014--10149322 Score: 426
Period size: 62 Copynumber: 5.0 Consensus size: 62
10149004 GTTAATAAAT
* * * *
10149014 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGAC-AA-ATGCCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT--CCAAACTTGTCAAA
* * *
10149076 AACTGATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* ** * *
10149138 AATTTATTTACGTGAGAATTGTTTCTCTCTTATTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10149200 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGT-TAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10149261 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10149323 CATTTTCGAT
Statistics
Matches: 220, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
61 58 0.26
62 159 0.72
63 2 0.01
64 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10149604 original size:54 final size:55
Alignment explanation
Indices: 10149526--10149639 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 55
10149516 GACGAACTTT
* *
10149526 CGAACTTGGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTGGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10149581 CGAACTT-GTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10149635 CGAAC
1 CGAAC
10149640 ATTCGAACTT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 42 0.81
55 10 0.19
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (55 bp):
CGAACTTGGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10149993 original size:215 final size:217
Alignment explanation
Indices: 10149592--10150064 Score: 577
Period size: 215 Copynumber: 2.2 Consensus size: 217
10149582 GAACTTGTCG
* * *
10149592 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
* ** *
10149657 TGTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTAAAGTTAATCCATTCCTTCTAGAAA
66 TGTTACGATTTCTTTTATAACTTCAGTTCCAAAATGCATTAAAGACAACCCATTCCTTCTAGAAA
* *** *
10149722 TTTTTTGAACATGCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 GTTTCCAAACATGCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGACAA
*
10149786 ACAAGTTTTGGCCT-TTAAATTA
196 ACAAGTTTTGGACTATT-AATTA
* *
10149808 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
* * * *
10149872 T-TTCACGATTTCTTTTATAAC-TGAGGTTCCTTAAA-GCATTGAAGACGACCCATTCCTT-TAC
66 TGTT-ACGATTTCTTTTATAACTTCA-GTTCC-AAAATGCATTAAAGACAACCCATTCCTTCTA-
* *
10149933 GCAAGTTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGT-TAAAATAGTTTGTCATTT
127 GAAAGTTTCCAAACATGCCATGCTCAGA-AAATCACATCATTTGGTCT-AAATAGTTTGTCATTT
10149996 TGACCAAACAAGTTTTGGACTATTAATTA
190 TGA-CAAACAAGTTTTGGACTATTAATTA
* * * * *
10150025 ATAACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTT
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTT
10150065 AGACAAACGC
Statistics
Matches: 220, Mismatches: 27, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
214 9 0.04
215 127 0.58
216 29 0.13
217 45 0.20
218 10 0.05
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
TGTTACGATTTCTTTTATAACTTCAGTTCCAAAATGCATTAAAGACAACCCATTCCTTCTAGAAA
GTTTCCAAACATGCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGACAA
ACAAGTTTTGGACTATTAATTA
Found at i:10150125 original size:62 final size:62
Alignment explanation
Indices: 10150027--10150336 Score: 467
Period size: 62 Copynumber: 5.0 Consensus size: 62
10150017 ATTAATTAAT
* * * * * **
10150027 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGACAAACGCCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10150089 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
** * *
10150151 AACTTATTTACGTGAGAATTGTTTCTCTCTTATTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10150213 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10150275 TACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10150337 CTTTTTCGAT
Statistics
Matches: 228, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 228 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10150612 original size:54 final size:54
Alignment explanation
Indices: 10150540--10150652 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
10150530 GATGAACTTT
* * *
10150540 CGAACTTGTCAAGCACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTGTCAAGAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * *
10150594 CGAACTTGTCGAA-AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAGAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10150648 CGAAC
1 CGAAC
10150653 ATCCGAACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
CGAACTTGTCAAGAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10150775 original size:332 final size:327
Alignment explanation
Indices: 10148126--10150884 Score: 1323
Period size: 332 Copynumber: 8.2 Consensus size: 327
10148116 CAAACTTGTC
* * * * * * *
10148126 AAAAACTTATTTACGTGAGAATTGTTTCCCTCTTAGTTC-TGGACAAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
10148190 AACTTATTTACGTTAGAATTGTTTCTCTC-TGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
65 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG------A--CGAACTTGTCGAAAAC
* * * * *
10148254 TTATTTACGTGAGAATTTTTTCTCT-TTGGTTCTTGGACAAACATCCGAACCTGTCAAAAC-TTA
122 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AAACTTTT
* * * * * * * * *
10148317 CGATTTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTT
186 CGA-TTTCTTTTATAACTTCAGTTCC-GAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTGT
* * * *
10148382 TTGAACATCCCATGCTCGAGAAGTCGCATAATTTGGTCTAAATAGTTTCTCTTTTTGTAAACAAG
249 TCGAACA-CCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
*
10148447 TTTCGGTCCTTGAATT
313 TTTTGG-CCTTGAATT
* * *
10148463 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10148528 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTAC
65 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAACTTATTTAC
10148593 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
130 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT-CGATTTCT
* * * * *
10148658 TTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATT
194 TTTATAACTTCAGTTCCGAAA-GTATTCAAGTTAATCCATTCCTTCTAGAAATTGTTCGAACA-C
* * * * *
10148723 CCATTCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTCAACAAGTTTTGGCCT
257 CCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGCC-
*
10148788 TTCAATT
321 TTGAATT
* * * * *
10148795 AAAAACTTATTTACGT-GACAATTGTATCTC-CTTTGTTGTTGGACGAACTTTTGAACTCGTC-A
1 AAAAACTTATTTACGTGGA-AATGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * ** * * * ** *
10148857 A-AC---TTTA-ACGAGTTCTTTTATAACT-GAGGTTCCTT-AAAGCA-TTGAAGAAGACCCATT
64 ACACTTATTTACATGAGTACTGTT-TCACTCTTGGTT-CTTGGACGAACTTGTCGAA-A-AC-TT
* * *** * ** * * * **
10148914 CCTTTACGCAAGTTCCAAACATTCCATGCTCGAGGAATCACATCATTTGGTCAAAATAGTTTGTC
124 -ATTTACGTAAG----AATTGTTTC-T-CTCTTGG--T----TC--TTGGAC-GAACA-TCCG--
** * * ** ** * ** * **
10148979 ATTTTGACCAAACAAGTTTTGGACTGTTAATAAATAACTT-AGTTACGTGAGAATT--A-TTTCT
170 AACTTG-TCAAAC---TTTTCGA-T-TTCTTTTATAACTTCAGTTCCGAAAGTATTCAAGTTAAT
** * * * * ** *
10149040 CTC-TTAGTTCTTAGACAAATG-CCCAA-A--CTTG-TC-AAAAA-CTG-AT--TTACGT-GAGA
229 C-CATTCCTTC-TAGA-AATTGTTCGAACACCCATGCTCGAAAAATC-GCATAATTTGGTCTA-A
* * * ** * ***** *
10149093 ATTGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTG--TC
289 ATAGTTTGTCT-TT--TT-GTAAAC-AAGTTTTGGCCTTGAATT
* * * ** * * *
10149135 AAAAATTTATTTACGTGAGAATTGTTTCTCTCTTATTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
10149200 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGT-TAAAAC
65 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG------A--CGAACTTGTCGAAAAC
*
10149264 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTT
122 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-TTTT
* * * * * * * *
10149329 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTT
186 CGATTTCTTTTATAACTTCAGTTCC-GAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTGTT
** *
10149394 CGAACACCCTATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
250 CGAACACCC-ATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
10149459 TTTGGTCCTTGAATT
314 TTTGG-CCTTGAATT
*
10149474 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGGTCAA
1 AAAAACTTATTTACGTGG-AAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT-GTCAA
*
10149539 ACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAATTTATTTA
64 ACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAACTTATTTA
* *
10149604 CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTGTTACGATTTC
129 CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT-TTTCGATTTC
* * * *
10149669 TTTTATAACTTCAGTTCCAAAATGTATTAAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACAT
193 TTTTATAACTTCAGTTCCGAAA-GTATTCAAGTTAATCCATTCCTTCTAGAAATTGTTCGAACA-
* * * *
10149734 GCCATGCTC-AGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGC
256 CCCATGCTCGA-AAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGC
*
10149798 CTTTAAATT
320 C-TTGAATT
* *
10149807 AAAAACTTATTTACGT-GAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC-A
1 AAAAACTTATTTACGTGGA-AATGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * ** * * * ** **
10149869 A-AC---TTT-CACGATTTCTTTTATAACT-GAGGTTCCTT-AAAGCA-TTGAAGACGACCCATT
64 ACACTTATTTACATGAGTACTGTT-TCACTCTTGGTT-CTTGGACGAACTTGTCGA--AAAC-TT
* * * *** ** * * * * *
10149926 CCTTTACGCAAG---T-TTCCAAACATTCCATGC-TCGA-GAA-ATCAC-ATCATTTGGTTAAAA
124 -ATTTACGTAAGAATTGTTTCTCTC-TT-GGTTCTTGGACGAACATC-CGA--ACTT-GTCAAAC
* * ** * * * **
10149983 TAGTTT-G---TCATTTTGACCAAAC--AAGTTTTG-GACTATT-AA-TTAAT-AACTTAGTTAC
182 T--TTTCGATTTC-TTTT-A--TAACTTCAGTTCCGAAAGTATTCAAGTTAATCCA-TTCCTT-C
* * * ** * * * * *
10150038 GT-GAGAATTATTTC--TCTCTTAGTTCTTAGACAAA-CGCCCA-AACTT-GTCAAAAACTTA-T
239 -TAGA-AATT-GTTCGAACACCCA-TGC-TCGAAAAATCG--CATAATTTGGTC-TAAA--TAGT
* * ** ** *
10150096 TTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTTCCAAACTTGT
294 TT--GT----CTT-TTTGTAAAC-AAGTT-TTGG-C---CTT--GAA--T-T
* * ** * * *
10150147 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTATTTCTTAGACGAACTTCCAAACTTGTCAA
1 -AAAAACTTATTTACGTG-GAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * *
10150212 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC-AAAT
64 ACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG------A--CGAACTTGTCGAAA-
*
10150276 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
120 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-TT
* ** * * * * * **
10150341 TTCGATTTCTTTTACAACTTTGGTTCCTGAAAGTATCCAAGATGATCCAAT-CTATCGACCAATT
184 TTCGATTTCTTTTATAACTTCAGTTCC-GAAAGTATTCAAGTTAATCCATTCCT-TCTAGAAATT
** *
10150405 GTTCGAACACCCTATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
247 GTTCGAACACCC-ATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
10150470 AGTTTTGGTCCTTGAATT
311 AGTTTTGG-CCTTGAATT
* *
10150488 AAAAACTTATTTACGTGGCAAATGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAG
1 AAAAACTTATTTACGTGG-AAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10150553 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAACTTATTTAC
65 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAACTTATTTAC
* * *
10150618 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATATCAAACTTTTATGATTTCT
130 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT-CGATTTCT
* * * *
10150683 TTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAGCATT
194 TTTATAACTTCAGTTCCGAAA-GTATTCAAGTTAATCCATTCCTTCTAGAAATTGTTCGAACA-C
* * * * *
10150748 CCATGTTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTCAACAAGTTTTGGCCT
257 CCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGCCT
*
10150813 TAAAATT
322 T-GAATT
* * *
10150820 AAAAACTTATTTACGT-GAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGACAA
1 AAAAACTTATTTACGTGGA-AATGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10150883 AC
64 AC
10150885 TTTCACGAGT
Statistics
Matches: 1787, Mismatches: 425, Indels: 426
0.68 0.16 0.16
Matches are distributed among these distances:
320 1 0.00
321 10 0.01
322 12 0.01
323 24 0.01
324 32 0.02
325 49 0.03
326 34 0.02
327 10 0.01
328 27 0.02
329 9 0.01
330 19 0.01
331 143 0.08
332 429 0.24
333 224 0.13
334 9 0.01
335 5 0.00
336 12 0.01
337 52 0.03
338 64 0.04
339 70 0.04
340 156 0.09
341 68 0.04
342 46 0.03
343 17 0.01
344 6 0.00
345 5 0.00
346 27 0.02
347 36 0.02
348 13 0.01
349 11 0.01
350 17 0.01
351 21 0.01
352 2 0.00
353 10 0.01
354 11 0.01
355 15 0.01
356 22 0.01
357 24 0.01
358 25 0.01
359 13 0.01
360 6 0.00
361 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (327 bp):
AAAAACTTATTTACGTGGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCGAAAACTTATTTACG
TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTCGATTTCTTT
TATAACTTCAGTTCCGAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTGTTCGAACACCCAT
GCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGCCTTGAA
TT
Found at i:10150986 original size:215 final size:218
Alignment explanation
Indices: 10150605--10151089 Score: 542
Period size: 215 Copynumber: 2.2 Consensus size: 218
10150595 GAACTTGTCG
* *
10150605 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATATCAAAC
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATATCAAAC
* * * **
10150670 TTTTATGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGACAATCCATTCCTTCTAGAAA
* * * * * * *
10150735 TTTTTCGAGCATTCCATGTTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TC-
131 TTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
*
10150798 AACAAGTTTTGGCCT-TAAAATTA
196 AACAAGTTTTGGACTGT-AAATTA
* * * *
10150821 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGA-CAAA
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACAT-ATCAAA
* * *
10150884 CTTTCACGAGTTCTTTTATAAC-TGAGGTTCCTTAAA-GCT-TTCAAGACGATCCATTCCTT-TA
65 CTTTCACGAGTTCTTTTATAACTTCA-GTTCC-AAAATG-TATTCAAGACAATCCATTCCTTCT-
*
10150945 AGCAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
126 AG-AAATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
*
10151009 TGACCAAACAAGTTTTGGACTGTTAATTA
190 TGACCAAACAAGTTTTGGACTGTAAATTA
* * * * * * *
10151038 ATAAA-TTAGTTACGTGAGAATTATTTCTCCCTTAGTTCTTAGACAAACATCC
1 A-AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCC
10151090 AAACTTGTCA
Statistics
Matches: 225, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
214 3 0.01
215 125 0.56
216 36 0.16
217 41 0.18
218 20 0.09
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.38
Consensus pattern (218 bp):
AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATATCAAAC
TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
AACAAGTTTTGGACTGTAAATTA
Found at i:10151156 original size:62 final size:62
Alignment explanation
Indices: 10151047--10151471 Score: 611
Period size: 62 Copynumber: 6.9 Consensus size: 62
10151037 AATAAATTAG
* * * * * *
10151047 TTACGTGAGAATTATTTCTCCCTTAGTTCTTAGACAAACATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10151109 TTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10151171 TTACGTGAGGATTGTTTCTCTCTTAGTTCTTAGAAGAACTTCCAAACTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
**
10151233 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10151295 TTACGTGAGGATTGTTTCTCTCTTAGTTCTTAGAAGAACTTCCAAACTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10151357 TTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10151418 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCC-AACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10151472 CTTTTACGAT
Statistics
Matches: 323, Mismatches: 39, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
61 66 0.20
62 257 0.80
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10151267 original size:124 final size:124
Alignment explanation
Indices: 10151047--10151471 Score: 676
Period size: 124 Copynumber: 3.4 Consensus size: 124
10151037 AATAAATTAG
* * *
10151047 TTACGTGAGAATTATTTCTCCCTTAGTTCTTAGACA-AACATCCAAACTTGTCAAAAACTTATTT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGA-AGAACATCCAAACTTGTCAAAAACTTAATT
*
10151111 ACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
65 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
* *
10151171 TTACGTGAGGATTGTTTCTCTCTTAGTTCTTAGAAGAACTTCCAAACTTGTCAAAAACTTAATTA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAAGAACATCCAAACTTGTCAAAAACTTAATTA
*
10151236 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTAAACTTGTCAAAAACTTAT
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
* *
10151295 TTACGTGAGGATTGTTTCTCTCTTAGTTCTTAGAAGAACTTCCAAACTTGTCAAAAACTTAATTA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAAGAACATCCAAACTTGTCAAAAACTTAATTA
* * **
10151360 CGTGAGAATTGTTTCTCTCTTGGTT-TTGGACTAACATCCGAACTTGTCAAAAACTTAT
66 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
* * *
10151418 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCC-AACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAAGAACATCCAAACTTGTCAAA
10151472 CTTTTACGAT
Statistics
Matches: 283, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
122 11 0.04
123 67 0.24
124 205 0.72
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (124 bp):
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAAGAACATCCAAACTTGTCAAAAACTTAATTA
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAT
Found at i:10151751 original size:54 final size:53
Alignment explanation
Indices: 10151675--10151786 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 53
10151665 GACAAACTTT
* * *
10151675 CGAACTTGTCAAAGACTTATTTAC-AAGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACATGTCAAAAACTAATTTACGAAGA--ACTGTTTCACTCTTGGTTCTTGGA
* *
10151729 CGAACATGTCAAAAACTAATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACATGTCAAAAACTAATTTACG-AAGAACTGTTTCACTCTTGGTTCTTGGA
10151783 CGAA
1 CGAA
10151787 TATCCGAACT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 47 0.92
56 4 0.08
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (53 bp):
CGAACATGTCAAAAACTAATTTACGAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10151903 original size:332 final size:331
Alignment explanation
Indices: 10151285--10152351 Score: 1448
Period size: 332 Copynumber: 3.2 Consensus size: 331
10151275 TAAACTTGTC
* * * * * * *
10151285 AAAAACTTATTTACGTGAG-GATTGTTTCTCTCTTAGTTCTTAGAAGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * ** * * *
10151349 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTT-TTGGACTAACATCCGAACTTGTCAAAAA
65 ACACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGG------A--CGAACTTGTCAAAAA
* *
10151413 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCC-AACTTGTCAAACTTTT
122 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
*
10151477 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATCCAAGATGATCCATTCTTTCAAGCAATTTT
187 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCAAGCAATTTT
*
10151542 TCGAACATCCCATGCTCGGGTAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAG
252 TCGAACATCCCATGCTCGGG-AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
* **
10151607 TTTCGGTCCTCGAACG
316 TTTCGGTCCTTGAATT
*
10151623 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10151688 GACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACGAACATGTCAAAAACTAATTTAC
66 CACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTAC
*
10151753 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAACTTTTACGATTTCT
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* * * * *
10151818 TTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCTATTCGTTCGAGCAATTTTTCGAACATC
196 TTTATAACTTCGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCAAGCAATTTTTCGAACATC
10151883 CCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC
261 CCATGCTCGGGAA-TCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC
10151948 TTGAATT
325 TTGAATT
*
10151955 AAAAAGTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10152020 CACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTAC
66 CACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTAC
*
10152085 GTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
131 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* * ** * * * * * *
10152150 TTTATAACTTCAGTTCC-AAAATGCATTAAAGTTAATCCATTCCATCTAGAAATTTTTTGAACAT
196 TTTATAACTTCGGTTCCTGAAA-GCATCCAAGATGATCCATTCCTTCAAGCAATTTTTCGAACAT
* ** * * * *
10152214 TCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-C
260 CCCATGCTC-GGGAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC
*
10152278 CTTTAAATT
324 C-TTGAATT
* *
10152287 AAAAACTTATTTACGTGAG-AATT-GTATCTC-CTCGGTTGTTGGACGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTG-GCAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
10152349 AAC
64 AAC
10152352 TTTCACGAGT
Statistics
Matches: 658, Mismatches: 62, Indels: 25
0.88 0.08 0.03
Matches are distributed among these distances:
331 100 0.15
332 465 0.71
333 5 0.01
337 1 0.00
338 83 0.13
339 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (331 bp):
AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTAC
GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTATAACTTCGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCAAGCAATTTTTCGAACATC
CCATGCTCGGGAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCT
TGAATT
Found at i:10152079 original size:54 final size:54
Alignment explanation
Indices: 10152007--10152119 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
10151997 GACGAACTTT
* * * *
10152007 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
1 CGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * *
10152061 CGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10152115 CGAAC
1 CGAAC
10152120 ATCCGAACTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (54 bp):
CGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10152618 original size:62 final size:62
Alignment explanation
Indices: 10152506--10152750 Score: 384
Period size: 62 Copynumber: 4.0 Consensus size: 62
10152496 GTTAATTAGT
* * *
10152506 AACTTAGTTACGTGAGAATTGTTT-TCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10152567 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10152629 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * **
10152691 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
10152751 GACATTTACG
Statistics
Matches: 170, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
61 23 0.14
62 147 0.86
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10152966 original size:339 final size:329
Alignment explanation
Indices: 10152564--10153295 Score: 873
Period size: 329 Copynumber: 2.2 Consensus size: 329
10152554 CAAACTTGTC
* * * *
10152564 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
* * *
10152629 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTAAAAAAC
66 AACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACG--------AACTTGTAAAAAAC
* ** *
10152694 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC-AGACATTT
123 TTAATTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTCGTCTA-ACATTT
* ** * * **
10152758 ACGATTTCTTTTAAAACTTCTGTTCCTGAAAGTATCCAAGATGATCCA-TCTTTCGAGCTATTTT
187 ACGATTTC-TTT--AACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTT
* * * * * * * *
10152822 TCGAACATCCCATGCCCGGGAAGTCGCTTAATTTGGTCTAAATTGTTTGTCTTTTTGGAAACAAG
249 TCAAACATCCCATGCCCAGAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAG
*
10152887 TTTCGGTCC-TTGAATT
314 TTTCGG-CCTTTAAATT
10152903 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAA
* * * * *
10152967 ACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTA
65 AAACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTGTAAAAAACTTAATTA
* *
10153032 CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTCGTCTAACTTTTATGATTTC
130 CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTCGTCTAACATTTACGATTTC
* * * * *
10153097 TTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTAAACATTCC
195 TTTAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCAAACATCCC
* * * *
10153162 ATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTT
260 ATGCCCAGAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTCGGCCTTT
10153227 AAATT
325 AAATT
* * *
10153232 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTCGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAA
10153295 A
65 A
10153296 CTTTCACGAG
Statistics
Matches: 341, Mismatches: 46, Indels: 23
0.83 0.11 0.06
Matches are distributed among these distances:
328 63 0.18
329 100 0.29
330 4 0.01
331 76 0.22
332 1 0.00
338 1 0.00
339 96 0.28
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (329 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
AACTTATTCACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTGTAAAAAACTTAATTAC
GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTCGTCTAACATTTACGATTTCT
TTAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAGAAATTTTTCAAACATCCCA
TGCCCAGAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGGAAACAAGTTTCGGCCTTTA
AATT
Found at i:10153027 original size:54 final size:54
Alignment explanation
Indices: 10152954--10153067 Score: 174
Period size: 54 Copynumber: 2.1 Consensus size: 54
10152944 GGACGAACTT
* * *
10152954 ACGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
1 ACGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGG
* * *
10153008 ACGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
1 ACGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGG
10153062 ACGAAC
1 ACGAAC
10153068 ATCCAAACTC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (54 bp):
ACGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGG
Found at i:10153551 original size:62 final size:62
Alignment explanation
Indices: 10153450--10153682 Score: 394
Period size: 62 Copynumber: 3.8 Consensus size: 62
10153440 TGTTAATTAG
* * *
10153450 AAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
*
10153512 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10153574 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTAAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
*
10153636 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10153683 ATCTGAAGTT
Statistics
Matches: 160, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 160 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10153874 original size:946 final size:945
Alignment explanation
Indices: 10151623--10154591 Score: 4936
Period size: 946 Copynumber: 3.1 Consensus size: 945
10151613 TCCTCGAACG
* ** * *
10151623 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
* * ** * * *
10151687 AGACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACGAA---C--A--TGTCAAAAAC
65 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAACTTGTCAAAAAC
* * *
10151745 -TAATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAACTTTT
130 TTAA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTT
* * * *
10151809 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCTATTCGTTCGAGCAATTTT
194 ACGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCA-TCTTTCGAGCTATTTT
10151874 TCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
258 TCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
*
10151939 TTTCGGTCCTTGAATTAAAAAGTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAAC
323 TTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAAC
10152004 TTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTG
388 TTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTG
* *
10152069 TCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
453 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCGTCA
* * * * * *
10152134 AACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAATGCATTAAAGTTAATCCATTCCATCTAG
518 AACTTTTATGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAG
10152199 AAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
580 AAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
10152264 AAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGG
645 AAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGG
* *
10152329 ACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAAGTTCCTCAAAGCATTCA
710 ACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCA
10152394 AGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTC
775 AGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTC
*
10152459 AAAATAGTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGTAACTTAGTTACGTGAGAA
840 AAAATAGTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGAAACTTAGTTACGTGAGAA
10152524 TTGTTT-TCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
905 TTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
10152564 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
*
10152629 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTAAAAAAC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-AAACTTGTCAAAAAC
* *
10152694 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAGACATTTA
130 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTA
*
10152759 CGATTTCTTTTAAAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTTTC
195 CGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTTTC
* * * *
10152824 GAACATCCCATGCCCGGGAAGTCGCTTAATTTGGTCTAAATTGTTTGTCTTTTTGGAAACAAGTT
260 GAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
10152889 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
325 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
*
10152954 ACGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTC
390 TCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTC
* *
10153019 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTCGTCTAA
455 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCGTCAAA
10153084 CTTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
520 CTTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
*
10153149 TTTTAAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
585 TTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
10153214 AGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGGACGAA
650 AGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGGACGAA
10153279 CTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACG
715 CTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACG
10153344 ATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAAT
780 ATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAAT
10153409 AGTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGAAACTTAGTTACGTGAGAATTGTT
845 AGTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGAAACTTAGTTACGTGAGAATTGTT
10153474 TCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
910 TCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
10153510 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
*
10153575 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCTAAACTTGTCAAAAAC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-AAACTTGTCAAAAAC
*
10153640 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAAGTTGTCAAACTTTTA
130 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTA
10153705 CGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTTTC
195 CGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTTTC
* * *
10153770 GAACATCCCATGCTCGGGAAGCCGCATAATTTGGTCTAAATAGTATGTCCTTTTGTAAACAAGTT
260 GAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
* * *
10153835 TCGGTCCTTGGATTAAAAACTTATTTACGTGGTAATTGGTTCTCTCCTGGTTCTTGGACGAACTT
325 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
* * *
10153900 TTGAACTTGTCAAACACTTATTTACATGAATATTGTTTCACTCTTGGTTCTTGGACGAACTTCCG
390 TCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTT--G
* *
10153965 AACTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAA
453 ------TCAAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAA
10154030 CTCGTCAAACTTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTT
511 CTCGTCAAACTTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTT
* * * * * * *
10154095 CTAAAAAATTTTCGAGCATTCCATGCGCGGAAAATCCCATCATTT-GTCTAAATAGTTTGTCATT
576 CTAGAAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATT
* ** * * * *
10154159 TTGTAAACAAATTTTTTCCTTTAAATTAAGAACTTATTTATGTCAGAATTGTATCTCCTTGGTTG
641 TTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTG
* * * *
10154224 TTTGATGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCA
706 TTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCA
* *
10154289 TTCAAGACGATCCATTCTTTTGAGTAAATTTTCAAACATTCCATGCTCGAGAGATCACATCATTT
771 TTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
* *
10154354 GGTCTAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACTGTTAATTA-ATAACTTAGTTACG
836 GGTCAAAATAG-TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGA-AACTTAGTTACG
*
10154418 CGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
899 TGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
* *
10154465 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACGTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
*
10154530 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAA
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCA-AACTTGTCAAA
10154592 CTTTTACGAT
Statistics
Matches: 1910, Mismatches: 95, Indels: 32
0.94 0.05 0.02
Matches are distributed among these distances:
941 96 0.05
942 1 0.00
944 1 0.00
945 367 0.19
946 468 0.25
947 1 0.00
948 279 0.15
949 109 0.06
950 3 0.00
954 218 0.11
955 367 0.19
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (945 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAACTTGTCAAAAACT
TAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTAC
GATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTTTCG
AACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTGTCA
AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCGTCAAAC
TTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
TTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGGACGAAC
TTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGA
TCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATA
GTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAGAAACTTAGTTACGTGAGAATTGTTT
CTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTC
Found at i:10153953 original size:62 final size:63
Alignment explanation
Indices: 10153868--10154031 Score: 188
Period size: 63 Copynumber: 2.6 Consensus size: 63
10153858 TTTACGTGGT
* * * ** *
10153868 AATTGGTTCTCTCCTGGTTCTTGGACGAACTTTTGAAC-TTGTCAAACACTTATTTACATGAA-
1 AATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTGTAAAACACTTATTTACAT-AAG
* * * *
10153930 TATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTTTAAAATACTTATTTACGTAAG
1 AATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTGTAAAACACTTATTTACATAAG
* * *
10153993 AATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACT
1 AATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
10154032 CGTCAAACTT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
62 34 0.40
63 52 0.60
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (63 bp):
AATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTGTAAAACACTTATTTACATAAG
Found at i:10154008 original size:63 final size:62
Alignment explanation
Indices: 10153847--10154031 Score: 212
Period size: 62 Copynumber: 3.0 Consensus size: 62
10153837 GGTCCTTGGA
* * * ** *
10153847 TTAAAAACTTATTTACGT-GGTAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTTGAACTTG
1 TTAAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
* * * * *
10153909 TCAAACACTTATTTACATGAA-TATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTT
1 TTAAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
* *
10153971 TTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACT
1 TTAAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
10154032 CGTCAAACTT
Statistics
Matches: 101, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
62 55 0.54
63 46 0.46
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.41
Consensus pattern (62 bp):
TTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
Found at i:10154519 original size:62 final size:62
Alignment explanation
Indices: 10154406--10154591 Score: 275
Period size: 62 Copynumber: 3.0 Consensus size: 62
10154396 GTTAATTAAT
* * * * *
10154406 AACTTAGTTACGCGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10154468 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10154530 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-CAGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA-AACTTGTCAAA
10154592 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
61 2 0.02
62 110 0.98
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10154866 original size:54 final size:54
Alignment explanation
Indices: 10154798--10154904 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
10154788 AACTTTCGAA
* *
10154798 CTTGTCAAACACTTAGTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAG
1 CTTGTCAAACACTTAGTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
* * * *
10154852 CTTGTCAGAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 CTTGTCA-AACACTTAGTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGA
10154905 ACATCCGAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (54 bp):
CTTGTCAAACACTTAGTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
Found at i:10154927 original size:331 final size:334
Alignment explanation
Indices: 10154189--10155138 Score: 1076
Period size: 331 Copynumber: 2.8 Consensus size: 334
10154179 TTAAATTAAG
* * * * * * * * *
10154189 AACTTATTTATGTCAGAATTGTATCTC-CTTGGTTGTTTGATGAACTTTCGAACTTATCAAACTT
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * ** * * * * *
10154253 TCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCTTTTGAGTAAAT
66 TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGT-ATT
* * *
10154318 TTTCAAACATTCCATGCTCGAG-AGATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAACAA
130 TTTCGAACATTCCATGCTCGGGAAG-TCACATCATTTGGTCTAAATAGTTTGTCATTTTG--TAA
* * * * * * * *
10154382 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGCGAGAATTGTTTCTCTCTTAGCTCTTGGA
192 ACAAGTTTTGGTCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * * * * * *
10154447 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGA
256 CGAACTTTCGAACTTGTCAAACACTTAGTTACATGAGAACTGTTTCACTCTTGGTTCTTAGA-GA
10154512 ACGTCCAAACTTGTCAAA
320 ACG--C-AACTTGTCAAA
* * *
10154530 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTT
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * *
10154595 TTACGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCA-TCTTTCGAGCTATT
66 TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAG-TATT
* * * * *
10154659 TTTCGAACATCCCATGCCCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
130 TTTCGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
10154724 AGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACG
195 AGTTTTGGT-CTTAAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACG
*
10154788 AACTTTCGAACTTGTCAAACACTTAGTTACATGAGTACTGTTTCACTCTTGGTTCTT-G-G-ACG
258 AACTTTCGAACTTGTCAAACACTTAGTTACATGAGAACTGTTTCACTCTTGGTTCTTAGAGAACG
* *
10154850 -AGCTTGTCAGA
323 CAACTTGTCAAA
*
10154861 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACTT
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * *
10154926 TTACGATTTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTACGATTTCTTTTATAACTTCGGTTCCTAAAA-GTATTCAAGATGATCCATTCTTTCGAG-TAT
* * * * *
10154990 TTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
129 TTTTCGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
10155055 AAGTTTTGGTCTTCAAATTAAAAACTTATTTACGTGAGAATT-GTATGTC-CTTGGTTGTTGGAC
194 AAGTTTTGGTCTT-AAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGAC
10155118 GAACTTTCGAACTTGTCAAAC
257 GAACTTTCGAACTTGTCAAAC
10155139 TTTCACGAGT
Statistics
Matches: 520, Mismatches: 79, Indels: 30
0.83 0.13 0.05
Matches are distributed among these distances:
330 3 0.01
331 149 0.29
332 101 0.19
333 1 0.00
335 3 0.01
336 1 0.00
338 2 0.00
339 104 0.20
340 2 0.00
341 82 0.16
342 72 0.14
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (334 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGTATTT
TTCGAACATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC
TTTCGAACTTGTCAAACACTTAGTTACATGAGAACTGTTTCACTCTTGGTTCTTAGAGAACGCAA
CTTGTCAAA
Found at i:10155234 original size:215 final size:216
Alignment explanation
Indices: 10154860--10155335 Score: 588
Period size: 215 Copynumber: 2.2 Consensus size: 216
10154850 AGCTTGTCAG
* *
10154860 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* * ** * **
10154925 TTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
*** * * *
10154990 TTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAA
131 TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
*
10155054 CAAGTTTTGGTC-TTCAAATTAA
196 CAAGTTTTGGACATT--AATTAA
* * * * *
10155076 AAACTTATTTACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* *
10155140 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAAGCA
66 TTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-A
10155203 AA-TTTCCAAACATTCCATGCTCCAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
128 AATTTTCCAAACATTCCATGCT-CAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
10155266 CCAAACAAGTTTTGGACAGTTAATTAA
192 -CAAACAAGTTTTGGACA-TTAATTAA
* * * *
10155293 TAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAC
10155336 AAACGTCCAA
Statistics
Matches: 222, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 1 0.00
215 129 0.58
216 34 0.15
217 44 0.20
218 12 0.05
219 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
CAAGTTTTGGACATTAATTAA
Found at i:10155397 original size:62 final size:62
Alignment explanation
Indices: 10155294--10155541 Score: 370
Period size: 62 Copynumber: 4.0 Consensus size: 62
10155284 GTTAATTAAT
* * * *
10155294 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10155356 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10155418 AACTTAATTACGTGAGAATTGTTTCTCCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10155480 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10155542 CTTTTACGAT
Statistics
Matches: 167, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 167 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10155409 original size:888 final size:888
Alignment explanation
Indices: 10154141--10156436 Score: 2720
Period size: 957 Copynumber: 2.5 Consensus size: 888
10154131 CCATCATTTG
* * * *
10154141 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTTTCCTTTAAATTAAGAACTTATTTATGTCAGA
1 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGTCCTTCAAATTAAAAACTTATTTACGTCAGA
* *
10154206 ATTGTATCTCCTTGGTTGTTTGATGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATAA
66 ATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATAA
* * * *
10154271 CTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCTTTTGAGTAAATTTTCAAACATTCCATGCT
131 CTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCT
* * * *
10154336 CGAGAGATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACTGTTAA
196 CCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACAGTTAA
* *
10154401 TTAATAACTTAGTTACGCGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCA
261 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCA
* * *
10154466 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACGTCCAAACTTGTCAAAA
326 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
10154531 ACTT-ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTT
391 ACTTAATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTT
10154595 TTACGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTT
455 TTACGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTT
* * *
10154660 TTCGAACATCCCATGCCCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
520 TTCGAACATCCCATGCCCGGGAAGCCGCATAATTTGGTCTAAATAGTATGTCCTTTTGTAAACAA
*
10154725 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAA
585 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCCTGGTTCTTGGACGAA
*
10154790 CTTTCGAACTTGTCAAACACTTAGTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG-A-G-
650 CTTTCGAACTTGTCAAACACTTAGTTACATGAATACTGTTTCACTCTTGGTTCTTGGACGAACGA
*
10154852 CTTGTCAGAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACA
715 CTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC-
*
10154916 T-GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCC
779 TCGTCAAACTTTTACGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
* * * * *
10154980 TTCTAGAAATTTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGG
841 TTCTAAAAAATTTTCGAACATTCCATGCGCAGAAAATCACATCATTT-G
* *
10155029 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTTCAAATTAAAAACTTATTTACGTGAG
1 TCTAAATAGTTTGTCATTTTGTAAACAAATTTT-GTCCTTCAAATTAAAAACTTATTTACGTCAG
* * *
10155093 AATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATA
65 AATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATA
10155158 ACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGC
130 ACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGC
*
10155223 TCCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACAGTTA
195 TCCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACAGTTA
* * *
10155288 ATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTA
260 ATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
* *
10155353 AAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAA
325 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10155418 AACTTAATTACGTGAGAATTGTTTCTCCCTTAGTTCTTAGACGAACTTCCA-AACTTGTCAAAAA
390 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-CAGAACTTGTC--AAA
* * * * * * ** * *
10155482 CTTAATTACGTGAGAATTGTTTCT-C-TCTT-GGTTCTTGGATGAA-CATCCGAACTTG-TCAAA
452 CTT--TTAC----GATTTCTTT-TACAACTTCTGTTCCT-GA--AAGTATCC-AAGATGATCCAT
* * * * ******* *
10155542 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCG-AGC
506 C-TTT-CGA--GC---TAT---TT---TT-C-G-AA-CATCC--CATG-CCCGGGAAGCCGCA-T
* *
10155606 AATTT-TTCGAACATCCCATGCTCGAGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGT
550 AATTTGGTCTAA-AT---A-G-T--A-T-GTC-C----TTTTG--T-AA-A--------------
* ** *
10155670 AAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTG
582 ---CAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCCTGGTTCTTG
* * * * *
10155735 GACAAACTTTCGAACTTGTCAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGAC
644 GACGAACTTTCGAACTTGTCAAACACTTAGTTACATGAATACTGTTTCACTCTTGGTTCTTGGAC
* * * *
10155800 GAACTTCCGAACTTTTTAAAATACTTATTTACGTAAGAATAGTTTCTCTCTTGTTTCTTGGACGA
709 GAA----CG-ACTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10155865 ACATCCGAACTTGTCAAACTTTTATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAAT
769 ACATCCGAACTCGTCAAACTTTTACGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAAT
* * * *
10155930 CCATTCCTTCTAAAAATTTTTCGAGCATTCCATGCGCGGAAAATCCCATCATTTGG
834 CCATTCCTTCTAAAAAATTTTCGAACATTCCATGCGCAGAAAATCACATCATTT-G
* * * * *
10155986 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGCCTTTAAATTAAGAACTTATTTATGTTAGA
1 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGTCCTTCAAATTAAAAACTTATTTACGTCAGA
* * * *
10156051 ATTGTATCTCCTTGGTTGTTTGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTGTTTTATAA
66 ATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATAA
* * *
10156116 CTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCT
131 CTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCT
* * * *
10156181 CGAGAGATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAA
196 CCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACAGTTAA
10156246 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTT-TTGGACGAACTTCCAAACTTGTC
261 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAG-TTCTTGGACGAACTTCCAAACTTGTC
*
10156310 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
325 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10156375 AACTT-ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTA-AACTTGTCAAA
390 AACTTAATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC-AGAACTTGTCAAA
10156437 AACTTAATTA
Statistics
Matches: 1217, Mismatches: 104, Indels: 107
0.85 0.07 0.07
Matches are distributed among these distances:
888 405 0.33
889 6 0.00
890 6 0.00
892 4 0.00
894 5 0.00
895 5 0.00
896 16 0.01
897 10 0.01
898 3 0.00
900 1 0.00
903 3 0.00
906 2 0.00
909 2 0.00
910 1 0.00
911 1 0.00
912 2 0.00
913 4 0.00
915 8 0.01
916 12 0.01
919 1 0.00
920 1 0.00
921 1 0.00
924 1 0.00
925 3 0.00
930 5 0.00
932 1 0.00
933 2 0.00
934 1 0.00
951 121 0.10
952 1 0.00
955 3 0.00
956 5 0.00
957 494 0.41
958 4 0.00
959 8 0.01
960 69 0.06
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (888 bp):
TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGTCCTTCAAATTAAAAACTTATTTACGTCAGA
ATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTATCAAACTTTCACAAGTTCTTTTATAA
CTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCT
CCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAACAAACAAGTTTTGGACAGTTAA
TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
ACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTTT
TACGATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCATCTTTCGAGCTATTTT
TCGAACATCCCATGCCCGGGAAGCCGCATAATTTGGTCTAAATAGTATGTCCTTTTGTAAACAAG
TTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCCTGGTTCTTGGACGAAC
TTTCGAACTTGTCAAACACTTAGTTACATGAATACTGTTTCACTCTTGGTTCTTGGACGAACGAC
TTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTC
GTCAAACTTTTACGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTA
AAAAATTTTCGAACATTCCATGCGCAGAAAATCACATCATTTG
Found at i:10155789 original size:62 final size:62
Alignment explanation
Indices: 10155722--10155882 Score: 189
Period size: 63 Copynumber: 2.6 Consensus size: 62
10155712 AATTGGTTCT
* * * * *
10155722 CTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTGCATGAGTACT-GTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGACTTATTTACATAAG-AATAGTTTCA
* * * * *
10155784 CTCTTGGTTCTTGGACGAACTTCCGAACTTTTTAAAATACTTATTTACGTAAGAATAGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAAGACTTATTTACATAAGAATAGTTTCA
* *
10155847 CTCTTGTTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10155883 CTTTTATGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
62 34 0.41
63 49 0.59
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGACTTATTTACATAAGAATAGTTTCA
Found at i:10155858 original size:63 final size:61
Alignment explanation
Indices: 10155693--10155876 Score: 183
Period size: 63 Copynumber: 3.0 Consensus size: 61
10155683 TCCTCGAACG
* * * *
10155693 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAAC-TTGT
1 AAAAACTTATTTACGTAGCAA-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
* * * * * * *
10155754 CAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTTT
1 -AAAAACTTATTTACGT-AGCAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
* *
10155817 AAAATACTTATTTACGTAAG-AATAGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTT
1 AAAA-ACTTATTTACGT-AGCAAT-GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10155877 GTCAAACTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
62 49 0.49
63 50 0.51
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGCAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
Found at i:10156040 original size:338 final size:338
Alignment explanation
Indices: 10155353--10156094 Score: 884
Period size: 338 Copynumber: 2.2 Consensus size: 338
10155343 CAAACTTGTA
* * * * *
10155353 AAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10155418 AACTTAATTACGTGAGAATTGTTTCTCCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAC
65 AACTTAATTACATGAGAACTGTTTCACCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAC
* * *
10155483 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
130 TTAATTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
** * * **
10155548 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTT
195 CGATTTC-TTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAAAAATTTTT
* * * * * * *
10155613 CGAACATCCCATGCTCGAGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
259 CGAACATCCCATGCGCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAAT
*
10155678 TTCGGTCCTCGAACG
324 TTCGGTCCTCAAACG
*
10155693 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * * * * *
10155758 GACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTTTAAAATA
65 AACTTAATTACATGAGAACTGTTTCACCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAA-A
* *
10155823 CTTATTTACGTAAGAATAGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
129 CTTAATTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * *
10155888 ATGATTTC-TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAAAAATTTTT
194 ACGATTTCTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAAAAATTTTT
* * *
10155951 CGAGCATTCCATGCGCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA
259 CGAACATCCCATGCGCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAA
* * **
10156015 TTTTGG-CCTTTAAATT
323 TTTCGGTCC-TCAAACG
* * * * *
10156031 AAGAACTTATTTATGTTAGAATT-GTATCTC-CTTGGTTGTTTGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACG-TGGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10156094 A
64 A
10156095 CTTTCACGAG
Statistics
Matches: 341, Mismatches: 55, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
337 36 0.11
338 125 0.37
339 5 0.01
340 107 0.31
341 68 0.20
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTAATTACATGAGAACTGTTTCACCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACT
TAATTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAAAAATTTTTCG
AACATCCCATGCGCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAATTT
CGGTCCTCAAACG
Found at i:10156353 original size:62 final size:62
Alignment explanation
Indices: 10156251--10156482 Score: 394
Period size: 62 Copynumber: 3.7 Consensus size: 62
10156241 GTTAATTAAT
* *
10156251 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTT-TTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10156313 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10156375 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10156437 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10156483 ATTTGAACTT
Statistics
Matches: 161, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 3 0.02
62 158 0.98
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10156774 original size:54 final size:54
Alignment explanation
Indices: 10156706--10156810 Score: 149
Period size: 54 Copynumber: 1.9 Consensus size: 54
10156696 AACTTTCAAA
* *
10156706 CTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAG
1 CTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACAAG
* * *
10156760 CTTGTCAGAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC
1 CTTGTCA-AACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGAC
10156811 GAACATCCGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (54 bp):
CTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACAAG
Found at i:10157142 original size:215 final size:217
Alignment explanation
Indices: 10156768--10157243 Score: 590
Period size: 215 Copynumber: 2.2 Consensus size: 217
10156758 AGCTTGTCAG
* *
10156768 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* * * * *
10156833 TTTACGATTTCTTTTATAACTTCGGTTCCGAAATGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTCACGAGTTCTTTTATAACTTAGGTTCCGAAATGCATTCAAGATAATCCATTCCTTCTAGAAAT
*** * * *
10156898 TTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGATCTAAATAGTTTGTCATTTTG-TAAA
131 TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGATCAAAATAGTTTGTCATTTTGACAAA
* *
10156962 CAAGTTTTGGTC-TTTAAATTAA
196 CAAGTTTTGGACAGTT-AATTAA
* * * * *
10156984 AAACTTATTTACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* *
10157048 TTCACGAGTTCTTTTATAA-TTGAGGTTCCTTAAA-GCATTCAAGATGATCCATTCCTT-TAAGC
66 TTCACGAGTTCTTTTATAACTT-AGGTTCC-GAAATGCATTCAAGATAATCCATTCCTTCT-AG-
*
10157110 AAA-TTTCCAAACATTCCATGCTCCAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
127 AAATTTTCCAAACATTCCATGCT-CAGAAAATCACATCATTTGATCAAAATAGTTTGTCATTTTG
10157173 ACCAAACAAGTTTTGGACAGTTAATTAA
191 A-CAAACAAGTTTTGGACAGTTAATTAA
* * * *
10157201 TAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAC
10157244 AAACGTCCAA
Statistics
Matches: 222, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 3 0.01
215 127 0.57
216 34 0.15
217 44 0.20
218 14 0.06
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (217 bp):
AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCGAAATGCATTCAAGATAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGATCAAAATAGTTTGTCATTTTGACAAA
CAAGTTTTGGACAGTTAATTAA
Found at i:10157295 original size:951 final size:952
Alignment explanation
Indices: 10154406--10163191 Score: 12358
Period size: 951 Copynumber: 9.2 Consensus size: 952
10154396 GTTAATTAAT
* * * *
10154406 AACTTAGTTACGCGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10154471 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGATGAACGTCCAAACTTGTCAAAAACTT-
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
*
10154535 ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTTTTACG
131 ATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
* *
10154600 ATTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCA-TCTTTCGAGCTATTTTTCG
195 ATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCG
* *
10154664 AACATCCCATGCCCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
260 AACATCCCATGCTCTGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
10154729 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* *
10154794 CGAACTTGTCAAACACTTAGTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAGCTTGTCA
390 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCA
*
10154859 GAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAA
455 AAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAA
10154923 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
520 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
*
10154988 ATTTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
585 ATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
10155053 ACAAGTTTTGGTCTTCAAATTAAAAACTTATTTACGTGAGAATTGTATGTCCTTGGTTGTTGGAC
650 ACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGAC
10155118 GAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAG
715 GAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAG
*
10155183 ACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAA
780 ACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAA
*
10155248 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAAT
845 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
*
10155313 TGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
910 TGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
* *
10155356 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10155421 TTAATTACGTGAGAATTGTTTCTCCCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
*
10155486 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10155551 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* *
10155616 ACATCCCATGCTC-GAGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
261 ACATCCCATGCTCTG-GAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* ** *
10155680 CGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* *
10155745 CGAACTTGTCAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGA
390 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC-AA-----G-
* * * *
10155810 ACTTTTTAAAATACTTATTTACGTAAGAATAGTTTCTCTCTTGTTTCTTGGACGAACATCCGAAC
448 -CTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * *
10155875 TTGTCAAACTTTTATGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
512 ATGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCC
* * * * * *
10155937 TTCTAAAAATTTTTCGAGCATTCCATGCGCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCA
577 TTCTAGAAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * * *
10156002 TTTTGTAAACAAATTTTGGCCTTTAAATTAAGAACTTATTTATGTTAGAATTGTATCTCCTTGGT
642 TTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
* *
10156067 TGTTTGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTGTTTTATAACTGAGGTTCCTTAAAG
707 TGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
* * * *
10156132 CATTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAGATCACATCAT
772 CATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCAT
10156197 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
837 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
* *
10156262 GTGAGAATTGTTTCTCTCTTAGCTT-TTGGACGAACTTCCAAACTTGTCAAA
902 GTGAGAATTGTTTCTCTCTTAG-TTCTTGGACAAACGTCCAAACTTGTCAAA
*
10156313 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10156378 TTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
** *
10156443 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTTGAACTTGTCAAACGTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10156508 TTTCTTTTACAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* * * *
10156573 ACATCCCATGCTCTGGAAGTCGCTTAATTTGGTCTAAATTGTTTGTTTTTTTGGAAACAAGTTTC
261 ACATCCCATGCTCTGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
10156638 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
* *
10156703 AAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCAG
391 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCAA
10156768 AA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAAC
456 AATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAAC
*
10156832 TTTTACGATTTCTTTTATAACTTCGGTTCCGAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
521 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
* *
10156897 TTTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGATCTAAATAGTTTGTCATTTTGTAAA
586 TTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10156962 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATGTCCTTGGTTGTTGGACG
651 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACG
*
10157027 AACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAATTGAGGTTCCTTAAAGCATTCAAGA
716 AACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGA
* *
10157092 TGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAAA
781 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAAA
*
10157157 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAATT
846 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATT
*
10157222 GTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
911 GTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
*
10157264 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10157329 TTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
*
10157394 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10157459 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* *
10157524 ACATCCCATGCTC-GAGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
261 ACATCCCATGCTCTG-GAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* ** * *
10157588 CGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCATGGACAAACTTT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* *
10157653 CGAACTTGTCAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGA
390 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC-AA-----G-
* * * *
10157718 ACTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGATGAACATCCGAAC
448 -CTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * *
10157783 TTGTCAAACTTTTATGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
512 ATGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCC
* * * * * *
10157845 TTCTAAAAATTTTTCGAGCATTCCATGCGCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCA
577 TTCTAGAAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * * *
10157910 TTTTGTAAACAAATTTTGGCCTTTAAATTAAGAACTTATTTATGTCAGAATTGTATCTCCTTGGT
642 TTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
* *
10157975 TGTTTGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTGTTTTATAACTGAGGTTCCTTAAAG
707 TGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
* * * *
10158040 CATTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAGATCACATCAT
772 CATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCAT
10158105 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
837 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
* *
10158170 GTGAGAATTGTTTCTCTCTTAGCTT-TTGGACGAACTTCCAAACTTGTCAAA
902 GTGAGAATTGTTTCTCTCTTAG-TTCTTGGACAAACGTCCAAACTTGTCAAA
* *
10158221 AACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10158286 TTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
**
10158351 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTTGAACTTGTCAAACTTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10158416 TTTCTTTTACAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* * * *
10158481 ACATCCCATGCTCTGGAAGTCGCTTAATTTGGTCTAAATTGTTTGTTTTTTTGGAAACAAGTTTC
261 ACATCCCATGCTCTGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
*
10158546 GGTCCTTGAATTAAAAACTTATTTACATGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
* * *
10158611 AAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAGCTTGTCAG
391 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCAA
10158676 AA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAAC
456 AATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAAC
10158740 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
521 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
* *
10158805 TTTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTCTGTAAA
586 TTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10158870 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATGTCCTTGGTTGTTGGACG
651 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACG
10158935 AACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGA
716 AACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGA
*
10159000 CGATCCATTCCTTTAAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAAA
781 CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAAA
*
10159065 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAATT
846 ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATT
*
10159130 GTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
911 GTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
*
10159172 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10159237 TTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10159302 ATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
* *
10159367 TTTCTTTTACAACTTCTGTTCCTGAAAGTATCCAAGATGATCCA-TCTTTCGAGCTATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* * * *
10159431 ACATCCCATGCTCGGGAAGCCGCATAATTTGGTCTAAATAGTATGTCCTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCTGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* * * *
10159496 GGTCCTTGGATTAAAAACTTATTTACGTGGTAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTT
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
10159561 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAA
391 GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC-AA-----G--
* * * *
10159626 CTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACT
448 CTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACA
* *
10159691 TGTCAAACTTTTATGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
513 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCT
* * * * *
10159753 TCTA-AAAATTTTCGAGCATTCCATGCGC-GAAAAATCCCATCATTTGGTCTAAATAGTTTGTCA
578 TCTAGAAATTTTTTGAACATTCCATGCTCAG-AAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * * *
10159816 TTTTGTAAACAAATTTTGGCCTTTAAATTAAGAACTTATTTATGTCAGAATTGTATCTCCTTGGT
642 TTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
*
10159881 TGTTTGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
707 TGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
* *
10159946 CATTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCCAGAAATCACATCAT
772 CATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCAT
*
10160011 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACAGTTAATTAATAACTTAGTTAC
837 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
*
10160076 GTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
902 GTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
*
10160127 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10160192 TTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10160257 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATTCGAACTTGTCAAACTTTTACGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10160322 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
*
10160387 ACATCCCATGCTC-GAGTAGTCGC---A-------T--A-AGTTTGTCTTTTTGTAAACAAGTTT
261 ACATCCCATGCTCTG-GAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* ** *
10160438 CGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* *
10160503 CGAACTTGTCAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGA
390 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC-AA-----G-
* * **
10160568 ACTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTTTTTCTTGGACGAACATCCGAAC
448 -CTTGTCAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * *
10160633 TTGTCAAACTTTTATGATTTC--TT-TAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
512 ATGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCC
* * * * * *
10160695 TTCTAAAAATTTTTCGAGCATTCCATGCGCGGAAAATCCCATCATTT-GTCTAAATAGTTTGTCA
577 TTCTAGAAATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCA
* * * * *
10160759 TTTTGTAAACAAATTTTGGCCTTTAAATTAAGAATTTATTTATGTCAGAATTGTATCTCCTTGGT
642 TTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
* *
10160824 TGTTTGACGAATTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
707 TGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAG
* * * *
10160889 CATTCAAGACGATCCATTCTTTTGAGTAAATTTCCAAACATTCCATGCTCGAGAGATCACATCAT
772 CATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCAT
*
10160954 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAT
837 TTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTAC
* * *
10161019 GTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
902 GTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
* *
10161070 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10161135 TTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
* * * *
10161200 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAAGTTGTCAAACTTTTATGA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
* *
10161265 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGAGCAATTGTTCGA
196 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* * * *
10161330 ACATCCTATGCT-TGGGAAGTCGCTTAATTTGGTCTAAATTGTTTGTCTTTTTGGAAACAAGTTT
261 ACATCCCATGCTCT-GGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* *
10161394 CGGTCCTTGAATTAAAAACTTATCTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACTTT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* *
10161459 CGAACTTGTCAAACACTTATTTACGTGAGTACTGTTTCACTCTTGGTTCTTGGACGAGCTTGTCA
390 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCA
*
10161524 AAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAA
455 AAATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAA
*
10161588 CTTTTACGATTTATTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
520 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
* *
10161653 ATTTTTTGAACACTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAT
585 ATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
10161718 ACAAGTTTTGG-C-------------C-----T---T-----TTGTATCTCCTTGGTTGTTGGAC
650 ACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGAC
*** *
10161756 GAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTCTGTTTCTTAAAGCATTCAAG
715 GAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAG
* * ***
10161821 ACGATCCATTCCTTTGAGCAAATTTCCAAACATTTCACGCTTGGGAAATCACATCATTTGGTCAA
780 ACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAA
*
10161886 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAATTTAGTTACGTGAGAAT
845 AATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
* * *
10161951 TGTTTCTCTCTTAGTTATTGGACAAACATCCAAACTAGTCAAA
910 TGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
* * *
10161994 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGACAAAACC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10162059 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAGCTT-CAAACTTTTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
*
10162123 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTATTT
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--AAAC-T-TTT
* * * * * ** *
10162188 ACGTGAGAATTGTTTCT-C-TCTT-GGTTCTTTGACGAA-CATCCGAACTTG-TCAAACTT-TTT
192 AC----GATTTCTTT-TACAACTTCGGTTC-CTGA--AAGTATCC-AAGATGATC-CA-TTCTTT
**** * * ** * * ** ** ** *
10162247 CGATTTCTTTTAC-AAC-TTCGGTTC-CTGAAAGT---ATTCAAGAT-GT-TCCATTCTTTCGAG
246 CGAGCAATTTTTCGAACATCCCATGCTCTGGAAGTCGCA-T-AATTTGGTCTAAATAGTTT-G-T
** * ** * * ** **** * * * *
10162304 CAATTT-TACGAAC-A--TCCCATGCTCG-GGTAGTCGCATAATTT-CGT--CTAAATAGTT-TG
307 CTTTTTGTA--AACAAGTTTCGGTCCTTGAATTAAAAAC-TTATTTACGTGGC-AATTGGTTCTC
** * ** * * * * * * *
10162360 TCTT--TT-TGTAAAC-AAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTG-GCAATTGGTTC
368 TCTTGGTTCT-TGGACGAACTTTC-GAACTTG-TC-AAACACTTATTTACATGAG-TACTGTTTC
* * * * * * * *
10162420 TCTCTTGGTTCTTGGACAAACTT-TCAAACTTGTCAAACACTTATTTACATGAGTACTGTTTCAC
428 ACTCTTGGTTCTTGGACAAGCTTGTC--A------AAATACTTATTTACGTAAGAATTGTTTCTC
* ** * * * ** *
10162484 TCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTT
485 TCTTGGTTCTTGGACGAAC--ATC-CGAAC--ATGT-C--AA-ACTT-TTACGAT-TT-CTT-TT
* * * * * * * * * * *
10162549 GGACGAACATCCGAACTTGTCAAACTGTTACGATTTC--TTTTAT-AACTTCAGTTCCA-AAATG
537 --A-TAAC-TTCG--GTT-CCAAAATG-T---A-TTCAAGTTAATCCA-TTC-CTTCTAGAAATT
* * * * *
10162610 TATTAAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCAGAAAATCACATCAT
588 TTTTGAA--CATTCCA-TGC-TC-AG--A-------AA-A-T-CA----C-----AT--CAT--T
*
10162675 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGT
623 TG-GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGT
*
10162740 GAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTTGAACTTGTCAAACTTTCACGAGTTCTTTT
687 GAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTT
*
10162805 ATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCA
752 ATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCA
10162870 TGCTCCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTG
817 TGCTCCAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTG
* * *
10162935 TTAATTAATAATTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTA
882 TTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTT
10163000 GTCAAA
947 GTCAAA
10163006 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10163071 TTATTTACGTGAGAATTGTTTCACTCTTATTTCTAAGACGAGCTTCCAAACTTTTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
*
10163136 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
131 ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10163192 AACTTATTTA
Statistics
Matches: 7111, Mismatches: 534, Indels: 321
0.89 0.07 0.04
Matches are distributed among these distances:
920 7 0.00
921 8 0.00
922 4 0.00
923 114 0.02
924 349 0.05
925 10 0.00
926 18 0.00
927 9 0.00
928 8 0.00
929 14 0.00
930 14 0.00
931 56 0.01
932 18 0.00
933 4 0.00
934 3 0.00
936 3 0.00
937 1 0.00
939 2 0.00
940 3 0.00
941 4 0.00
942 2 0.00
943 854 0.12
944 42 0.01
945 1 0.00
946 3 0.00
947 71 0.01
948 151 0.02
949 16 0.00
950 501 0.07
951 1646 0.23
952 4 0.00
953 3 0.00
954 17 0.00
955 594 0.08
956 227 0.03
957 1603 0.23
958 19 0.00
959 87 0.01
960 140 0.02
961 1 0.00
968 2 0.00
969 1 0.00
970 1 0.00
971 2 0.00
975 1 0.00
980 2 0.00
982 3 0.00
984 2 0.00
985 35 0.00
986 1 0.00
999 1 0.00
1004 1 0.00
1007 1 0.00
1011 3 0.00
1012 352 0.05
1013 72 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (952 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAACTTA
ATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
ACATCCCATGCTCTGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACAAGCTTGTCAA
AATACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
TTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACG
AACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGA
CGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCCAGAAATCACATCATTTGGTCAAA
ATAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATT
GTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTCAAA
Found at i:10157300 original size:62 final size:62
Alignment explanation
Indices: 10157202--10157449 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10157192 GTTAATTAAT
* * * *
10157202 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10157264 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10157326 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10157388 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10157450 CTTTTACGAT
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 171 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10157766 original size:63 final size:61
Alignment explanation
Indices: 10157601--10157784 Score: 181
Period size: 63 Copynumber: 3.0 Consensus size: 61
10157591 TCCTCGAACG
* * * * *
10157601 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCATGGACAAACTTTCGAAC-TTGT
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
* * * * * * *
10157662 CAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTTT
1 -AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
* * *
10157725 AAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGATGAACATCCGAACTT
1 AAAA-ACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10157785 GTCAAACTTT
Statistics
Matches: 97, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
62 47 0.48
63 50 0.52
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
Found at i:10158261 original size:62 final size:62
Alignment explanation
Indices: 10158159--10158390 Score: 385
Period size: 62 Copynumber: 3.7 Consensus size: 62
10158149 GTTAATTAAT
* *
10158159 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTT-TTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10158221 AACTTGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10158283 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10158345 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10158391 ATTTGAACTT
Statistics
Matches: 159, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
61 3 0.02
62 156 0.98
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10158682 original size:54 final size:54
Alignment explanation
Indices: 10158614--10158720 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
10158604 AACTTTCAAA
* *
10158614 CTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAG
1 CTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
* * *
10158668 CTTGTCAGAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 CTTGTCA-AACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGA
10158721 ACATCCGAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (54 bp):
CTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
Found at i:10159050 original size:215 final size:217
Alignment explanation
Indices: 10158676--10159151 Score: 588
Period size: 215 Copynumber: 2.2 Consensus size: 217
10158666 AGCTTGTCAG
* *
10158676 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* * ** * **
10158741 TTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
*** * * *
10158806 TTTTTGAACATTCTATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTCTG-TAAA
131 TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTCTGACAAA
* *
10158870 CAAGTTTTGGTC-TTTAAATTAA
196 CAAGTTTTGGACAGTT-AATTAA
* * * * *
10158892 AAACTTATTTACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
* *
10158956 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAAGCA
66 TTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-A
*
10159019 AA-TTTCCAAACATTCCATGCTCCAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
128 AATTTTCCAAACATTCCATGCT-CAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTCTGA
10159082 CCAAACAAGTTTTGGACAGTTAATTAA
192 -CAAACAAGTTTTGGACAGTTAATTAA
* * * *
10159109 TAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
1 AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAC
10159152 AAACGTCCAA
Statistics
Matches: 221, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 1 0.00
215 128 0.58
216 34 0.15
217 44 0.20
218 14 0.06
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (217 bp):
AAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCCGAACATGTCAAACT
TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTCTGACAAA
CAAGTTTTGGACAGTTAATTAA
Found at i:10159208 original size:62 final size:62
Alignment explanation
Indices: 10159110--10159357 Score: 370
Period size: 62 Copynumber: 4.0 Consensus size: 62
10159100 GTTAATTAAT
* * * *
10159110 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10159172 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10159234 AACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
10159296 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10159358 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 168 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10159612 original size:62 final size:62
Alignment explanation
Indices: 10159541--10159698 Score: 199
Period size: 63 Copynumber: 2.5 Consensus size: 62
10159531 GGTTCTCTCC
** * *
10159541 TGGTTCTTGGACGAACTTTTGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCT
1 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCT
* * * * * *
10159603 TGGTTCTTGGACGAACTTCCGAACTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCT
1 TGGTTCTTGGACGAACTTCCGAAC-TTGTCAAACACTTATTTACATAAGAACTGTTTCACTCT
* *
10159666 TGTTTCTTGGACGAACATCCGAACTTGTCAAAC
1 TGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10159699 TTTTATGATT
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
62 28 0.35
63 52 0.65
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
TGGTTCTTGGACGAACTTCCGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCT
Found at i:10159673 original size:63 final size:61
Alignment explanation
Indices: 10159506--10159691 Score: 210
Period size: 62 Copynumber: 3.0 Consensus size: 61
10159496 GGTCCTTGGA
* * * ** *
10159506 TTAAAAACTTATTTACGTGGTAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTTGAACTTG
1 TTAAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
* * * * * *
10159568 TCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTT
1 TTAAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
* *
10159630 TTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTT
1 TTAAAA-ACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10159692 GTCAAACTTT
Statistics
Matches: 101, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
62 52 0.51
63 49 0.49
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.41
Consensus pattern (61 bp):
TTAAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTT
Found at i:10160163 original size:62 final size:62
Alignment explanation
Indices: 10160065--10160312 Score: 372
Period size: 62 Copynumber: 4.0 Consensus size: 62
10160055 GTTAATTAAT
* * * *
10160065 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACGTCCAAACTTGTAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10160127 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10160189 AACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10160251 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATT-CGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTCCAAACTTGTCAAA
10160313 CTTTTACGAT
Statistics
Matches: 169, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 167 0.99
63 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10160616 original size:63 final size:61
Alignment explanation
Indices: 10160451--10160634 Score: 190
Period size: 63 Copynumber: 3.0 Consensus size: 61
10160441 TCCTCGAACG
* * * *
10160451 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAAC-TTGT
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
* * * * * * *
10160512 CAAAGACTTATTTGCATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTTTT
1 -AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
** *
10160575 AAAATACTTATTTACGTAAGAATTGTTTCTCTCTTTTTTCTTGGACGAACATCCGAACTT
1 AAAA-ACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10160635 GTCAAACTTT
Statistics
Matches: 98, Mismatches: 21, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
62 48 0.49
63 50 0.51
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTGT
Found at i:10161255 original size:62 final size:62
Alignment explanation
Indices: 10161008--10161242 Score: 391
Period size: 62 Copynumber: 3.8 Consensus size: 62
10160998 GTTAATTAAT
* * * *
10161008 AACTTAGTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10161070 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10161132 AACTT-ATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
1 AACTTAATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10161194 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
10161243 TGAAGTTGTC
Statistics
Matches: 164, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
61 3 0.02
62 158 0.96
63 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10161533 original size:54 final size:54
Alignment explanation
Indices: 10161463--10161569 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
10161453 AACTTTCGAA
* * *
10161463 CTTGTCAAACACTTATTTACGTGAGTACTGTTTCACTCTTGGTTCTTGGACGAG
1 CTTGTCAAAAACTTATTTACGTAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
* * *
10161517 CTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 CTTGTCAAAAACTTATTTACGTAAGAACTGTTTCACTCTTGGTTCTTGGACGA
10161570 ACATCCGAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (54 bp):
CTTGTCAAAAACTTATTTACGTAAGAACTGTTTCACTCTTGGTTCTTGGACGAG
Found at i:10162045 original size:62 final size:62
Alignment explanation
Indices: 10161939--10162240 Score: 444
Period size: 62 Copynumber: 4.9 Consensus size: 62
10161929 AATAATTTAG
* * * *
10161939 TTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACATCCAAACTAGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * * *
10162001 TTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGACAAAACCTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * * * *
10162063 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAGC-TTCAAACTTTTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* *
10162124 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* *
10162186 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10162241 CTTTTTCGAT
Statistics
Matches: 214, Mismatches: 25, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
61 53 0.25
62 161 0.75
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
Found at i:10162172 original size:123 final size:124
Alignment explanation
Indices: 10161939--10162240 Score: 435
Period size: 123 Copynumber: 2.4 Consensus size: 124
10161929 AATAATTTAG
* * * * *
10161939 TTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACATCCAAACTAGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCAAACTAGTCAAAAACTTAATTA
* *
10162004 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGACAAAACCTTAT
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGACAAAAACTTAT
* * **
10162063 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAGC-TTCAAACTTTTCAAAAACTTAATTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCAAACTAGTCAAAAACTTAATTA
* * * *
10162127 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGACAAAAACTTAT
* * *
10162186 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCAAACTAGTCAAA
10162241 CTTTTTCGAT
Statistics
Matches: 157, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
123 111 0.71
124 46 0.29
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (124 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCAAACTAGTCAAAAACTTAATTA
CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGACAAAAACTTAT
Found at i:10162516 original size:54 final size:54
Alignment explanation
Indices: 10162446--10162556 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 54
10162436 CAAACTTTCA
* * * *
10162446 AACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
1 AACTTGTCAAAAACTTATTTACATAAGAACTCTTTCACTCTTGGTTCTTGGACG
* * *
10162500 AACTTGTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGACG
1 AACTTGTCAAAAACTTATTTACATAAGAACTCTTTCACTCTTGGTTCTTGGACG
10162554 AAC
1 AAC
10162557 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (54 bp):
AACTTGTCAAAAACTTATTTACATAAGAACTCTTTCACTCTTGGTTCTTGGACG
Found at i:10162910 original size:215 final size:217
Alignment explanation
Indices: 10162508--10163005 Score: 591
Period size: 215 Copynumber: 2.3 Consensus size: 217
10162498 CGAACTTGTC
* * *
10162508 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
* * **
10162573 CTGTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTAAAGTTAATCCATTCCTTCTAGAA
66 CTGTTACGAGTTCTTTTATAACTTCAGTTCCAAAATGCATTAAAGACAATCCATTCCTTCTAGAA
*** * *
10162638 ATTTTTTGAACATTCCATGCTCAGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG-TA
131 ATTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
*
10162702 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * **
10162724 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
* * * *
10162788 CT-TTCACGAGTTCTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TA
66 CTGTT-ACGAGTTCTTTTATAACTTCA-GTTCC-AAAATGCATTAAAGACAATCCATTCCTTCT-
10162849 AGCAAA-TTTCCAAACATTCCATGCTCCAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATT
127 AG-AAATTTTCCAAACATTCCATGCT-CAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATT
10162912 TTGACCAAACAAGTTTTGGACTGTTAATT
190 TTGA-CAAACAAGTTTTGGACTGTTAATT
* * * * * * * *
10162941 AATAATTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
10163006 AACTTATTTA
Statistics
Matches: 239, Mismatches: 33, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
214 5 0.02
215 125 0.52
216 36 0.15
217 45 0.19
218 28 0.12
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
CTGTTACGAGTTCTTTTATAACTTCAGTTCCAAAATGCATTAAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10163057 original size:62 final size:62
Alignment explanation
Indices: 10162951--10163375 Score: 602
Period size: 62 Copynumber: 6.9 Consensus size: 62
10162941 AATAATTTAG
* * * *
10162951 TTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTAGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* *
10163013 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * ** * * * *
10163075 TTACGTGAGAATTGTTTCACTCTTATTTCTAAGACGAGCTTCCAAACTTTTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * *
10163137 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * *
10163199 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
*
10163261 TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * * * *
10163323 TTACGTAAGAATT-ATT-TCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
10163376 CTTTTACGAT
Statistics
Matches: 326, Mismatches: 37, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
60 33 0.10
61 2 0.01
62 291 0.89
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
Found at i:10163625 original size:62 final size:62
Alignment explanation
Indices: 10163526--10163652 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10163516 TCCTTGAATT
* * * * *
10163526 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10163588 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10163650 AAA
1 AAA
10163653 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10163819 original size:278 final size:275
Alignment explanation
Indices: 10163251--10163867 Score: 884
Period size: 277 Copynumber: 2.2 Consensus size: 275
10163241 CAAACTGGTC
* * *
10163251 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10163316 AACTTATTTACGTAAGAATTATTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACTTTT
66 AACTTATGTACGTAAGAATTATTTCTCTTAGTTCTTGGACGAACATCCGAACTGGTCAAACTTTT
* * * *
10163381 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTGT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTGT
* *
10163446 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CTAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
*
10163511 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * **
10163526 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10163591 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATT-ATT-TCTCTTAGTTCTTGGACGAACATCCGAACTGGTCAAACTT
10163656 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* * * *
10163721 T-TTTGAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTT-TAA
193 TGTCT-AACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTC-TTTTTGTAA
*
10163783 ACAAGTTTTGGTCTTTAAATT
255 ACAAGTTTTGGTCCTTAAATT
** * *
10163804 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCC-TGGTTCTTGGACGAACATCCAAACTTGTCAA
10163867 A
65 A
10163868 CTTTCACGAG
Statistics
Matches: 305, Mismatches: 30, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
275 77 0.25
276 7 0.02
277 112 0.37
278 104 0.34
279 5 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTATTTCTCTTAGTTCTTGGACGAACATCCGAACTGGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTGT
CTAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10164001 original size:215 final size:216
Alignment explanation
Indices: 10163588--10164083 Score: 615
Period size: 215 Copynumber: 2.3 Consensus size: 216
10163578 TGAACTTGTC
* * * *
10163588 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10163653 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
*** * * * * ** *
10163718 ATTTTTTGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTTTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
*
10163783 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* ** *
10163804 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
10163868 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTGC
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG-
*
10163932 AAA-TTTCCAAACTTTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
10163995 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * *
10164019 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10164084 AACTTATTTA
Statistics
Matches: 237, Mismatches: 38, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 173 0.73
216 61 0.26
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10164104 original size:62 final size:62
Alignment explanation
Indices: 10164022--10164235 Score: 315
Period size: 62 Copynumber: 3.5 Consensus size: 62
10164012 GTTAATTAAT
* ***
10164022 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
* *
10164084 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
*
10164146 AACTTATTTACGTGAGAATTGTTTCTCTCATT-GTTCTT-AGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TTGGTTCTTGA-ACGAACTTCCAAACTTGTCAAA
* *
10164208 AACTTATTTACGTAAGAATTGTGTCTCT
1 AACTTATTTACGTGAGAATTGTTTCTCT
10164236 TAGTTCTGGG
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
62 137 0.99
63 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
Found at i:10164503 original size:399 final size:401
Alignment explanation
Indices: 10163804--10164544 Score: 1035
Period size: 399 Copynumber: 1.9 Consensus size: 401
10163794 TCTTTAAATT
* * * * *
10163804 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGATAAACATCCAAACTTGTCAAAC
* * *
10163869 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
66 TTTCACGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATACATTCCTTTCTGCAA
* *
10163934 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTGTAAA
* * * *
10163999 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
196 CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGAAC
* * *
10164064 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
261 GAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10164129 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCATTGTTCTTAGACGAACAT
326 CATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCATTGTTCTTAGACGAACAT
10164194 CCAAACTTGTC
391 CCAAACTTGTC
* * * *
10164205 AAAAACTTATTTACGTAAGAATTGTGTCT-CTTAGTTCTGGGATGAACATCCGAACTTGTTAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGATAAACATCCAAACTTGTCAAAC
* * * *
10164269 TTTTACGATTTCTTTTATAACTTCGGTT-CTAGAAAGTATTCAAGA-TATCCATT-CTTTCTAGC
66 TTTCACGAGTTCTTTTATAACTTCGGTTCCT-GAAAGTATTCAAGACGATACATTCCTTTCT-GC
* * * * * ***
10164331 AATTTTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 AAATTTCCAAACATTCCATGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTGT
* * * *
10164395 AAACCAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTT
193 AAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTT
* *
10164459 GGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
257 GAACGAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGA
*
10164524 CGAACATCCGAACTTGTCAAA
322 CGAACATCCAAACTTGTCAAA
10164545 CTTTTACGAT
Statistics
Matches: 295, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
398 6 0.02
399 194 0.66
400 68 0.23
401 27 0.09
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGATAAACATCCAAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATACATTCCTTTCTGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTGTAAA
CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGAAC
GAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCATTGTTCTTAGACGAACAT
CCAAACTTGTC
Found at i:10164517 original size:62 final size:62
Alignment explanation
Indices: 10164418--10164544 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10164408 TCCTTGAATT
* * * * *
10164418 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10164480 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10164542 AAA
1 AAA
10164545 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10164698 original size:278 final size:275
Alignment explanation
Indices: 10164143--10164759 Score: 873
Period size: 277 Copynumber: 2.2 Consensus size: 275
10164133 CAAACTTGTC
* * * * * *
10164143 AAAAACTTATTTACGTGAGAATTGTTTCTCTCATTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* * * *
10164208 AACTTATTTACGTAAGAATTGTGTCTCTTAGTTCTGGGATGAACATCCGAACTTGTTAAACTTTT
66 AACTTATGTACGTAAGAATTGTCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
* * * * * *
10164273 ACGATTTCTTTTATAACTTCGGTTCTAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTA
** * * * *
10164338 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 AAAACATTCCATGCTCAGGAAATCCCATAATCTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10164403 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* *
10164418 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* *
10164483 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG--TCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTT
10164548 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* * *
10164613 TTAAAAACATTCCATGCT-TGGAAAATCCCATCATCTGGTCTAAATTGTTTGTCATTTTGTAAAC
193 TTAAAAACATTCCATGCTCAGG-AAATCCCATAATCTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10164677 AAGTTTTGGTCTTTAAATT
257 AAGTTTTGGTCCTTAAATT
10164696 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGACGAACTT-TCAAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCC-TGGTTCTTGGACGAACTTCT-AAACTTGTCA
10164758 AA
64 AA
10164760 CTTTCACGAG
Statistics
Matches: 303, Mismatches: 33, Indels: 10
0.88 0.10 0.03
Matches are distributed among these distances:
275 77 0.25
276 6 0.02
277 111 0.37
278 109 0.36
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTA
AAAACATTCCATGCTCAGGAAATCCCATAATCTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10164860 original size:892 final size:892
Alignment explanation
Indices: 10163130--10166018 Score: 5215
Period size: 892 Copynumber: 3.2 Consensus size: 892
10163120 ACTTTTCAAA
* * * *
10163130 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTCAAAAAC
* *
10163195 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTGGTCAAAAACTTA
66 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
*
10163260 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTT
131 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
* * *
10163325 ACGTAAGAATTATTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACTTTTACGATTTCT
196 ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
*
10163390 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTGTCTAACATTC
261 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
10163455 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
326 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
10163520 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
391 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
10163585 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
456 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10163650 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
521 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
* *
10163715 GAAATTTTTTGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTT
586 GAAATTTTTAGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
10163780 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
651 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
*
10163845 GATAAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
716 GATGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
10163910 AAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGT
781 AAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGT
10163975 CAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
846 CAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
**
10164022 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTCAAAAAC
10164087 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
*
10164152 TTTACGTGAGAATTGTTTCTCTCATTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
131 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
* *
10164217 ACGTAAGAATTGTGTCTCTTAGTTCTGGGATGAACATCCGAACTTGTTAAACTTTTACGATTTCT
196 ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
*
10164282 TTTATAACTTCGGTTCTAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
261 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
10164347 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
326 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
10164412 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
391 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
10164477 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
456 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10164542 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
521 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
* * *
10164607 GAAATTTTAAAAACATTCCATGCTTGGAAAATCCCATCATCTGGTCTAAATTGTTTGTCATTTTG
586 GAAATTTTTAGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
10164672 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
651 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
*
10164737 GACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
716 GATGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
10164802 AAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGT
781 AAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGT
*
10164867 CAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
846 CAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
**
10164914 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTCAAAAAC
10164979 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
10165044 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
131 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
10165109 ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
196 ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
10165174 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
261 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
10165239 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
326 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
*
10165304 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTAGTTCTTGGACGAACTTCTGAACTT
391 TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
10165369 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
456 GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10165434 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
521 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
* * *
10165499 GAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCTTTTGGTCTAAATAGTTTGTCATTTTG
586 GAAATTTTTAGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
*
10165564 TAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGG-TCGTT
651 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTC-TT
* * * *
10165628 GGATGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATT
715 GGATGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * *
10165693 CAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGG
780 CAAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGG
* ** *
10165758 TCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTCAATTAAT
845 TCAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* * * * *
10165806 AACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTG-GCGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTCAAAAAC
* *
10165870 TTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * ** * **
10165935 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGATTAACTTCCAAACTTGTCAATCACTTATTT
131 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
* *
10166000 ACGTGAGAATGGTTTCTCT
196 ACGTAAGAATTGTTTCTCT
10166019 CTTGGTTCTT
Statistics
Matches: 1927, Mismatches: 69, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
891 161 0.08
892 1766 0.92
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (892 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTCAAAAAC
TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACATTC
CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCT
TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTT
GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTA
GAAATTTTTAGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
GATGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
AAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGT
CAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
Found at i:10164893 original size:215 final size:216
Alignment explanation
Indices: 10164480--10164975 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
10164470 TGAACTTGTC
* * * *
10164480 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10164545 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * **
10164610 ATTTTAAAAACATTCCATGCTTGGAAAATCCCATCATCTGGTCTAAATTGTTTGTCATTTTGTAA
131 ATTTTAAAAACATTCCATGCTCGGAAAATCACATCATCTGGTCAAAATAGTTTGAAATTTTGTAA
*
10164675 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* *
10164696 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
10164760 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTGC
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG-
** * * *
10164824 AAA-TTTCCAAACTTTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTT
129 AAATTTTAAAAACATTCCATGCTCGGA-AAATCACATCATCTGGTCAAAATAGTTTGAAATTTTG
10164887 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * *
10164911 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10164976 AACTTATTTA
Statistics
Matches: 241, Mismatches: 34, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 3 0.01
215 175 0.73
216 63 0.26
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTAAAAACATTCCATGCTCGGAAAATCACATCATCTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10165156 original size:60 final size:62
Alignment explanation
Indices: 10164914--10165159 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10164904 GTTAATTAAT
* * * ***
10164914 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10164976 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10165038 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10165100 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10165160 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 32 0.19
61 2 0.01
62 134 0.80
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10165395 original size:399 final size:401
Alignment explanation
Indices: 10164696--10165436 Score: 1035
Period size: 399 Copynumber: 1.9 Consensus size: 401
10164686 TCTTTAAATT
* * * * *
10164696 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAACATCCAAACTTGTCAAAC
* ** *
10164761 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
66 TTTCACGAGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCTGCAA
* *
10164826 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAAA
* * * * *
10164891 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
196 CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTAGTTCTTGAAC
* * *
10164956 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
261 GAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10165021 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
326 CATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
10165086 CCAAACTTGTC
391 CCAAACTTGTC
* * *
10165097 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTAGTTCTGGGATGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAACATCCAAACTTGTCAAAC
* * * *
10165161 TTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGA-TATCCATT-CTTTCTAGCA
66 TTTCACGAGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCT-GCA
* * * * * **
10165224 ATTTTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTG-TCTTTTTGT
130 AATTTCCAAACATTCCATGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTT-T
* * * *
10165287 AAACCAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTAGTTCTT
193 AAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTAGTTCTT
* *
10165351 GGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
257 GAACGAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGA
*
10165416 CGAACATCCGAACTTGTCAAA
322 CGAACATCCAAACTTGTCAAA
10165437 CTTTTACGAT
Statistics
Matches: 295, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
398 11 0.04
399 186 0.63
400 71 0.24
401 27 0.09
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAACATCCAAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCTGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAAA
CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTAGTTCTTGAAC
GAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
CCAAACTTGTC
Found at i:10165411 original size:62 final size:62
Alignment explanation
Indices: 10165310--10165436 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10165300 TCCTTGAATT
* * * * *
10165310 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTAGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTAGTTCTTGGACGAACATCCGAACTTGTC
* * *
10165372 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTAGTTCTTGGACGAACATCCGAACTTGTC
10165434 AAA
1 AAA
10165437 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTAGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10165819 original size:215 final size:215
Alignment explanation
Indices: 10165372--10165866 Score: 599
Period size: 215 Copynumber: 2.3 Consensus size: 215
10165362 TGAACTTGTC
*
10165372 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10165437 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCTAGAA
* * * * * * * *
10165502 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAA
130 ATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTAA
* *
10165567 ACAAGTTTTGGCCTTTAAATT
195 ACAAGTTTTGGACTGTAAATT
* * * *
10165588 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGG-TCGTTGGATGAACTTTCGAACTTGTCAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACATCCGAACTTGTCAA
* * *
10165651 ACTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGC-ATTCAAGACGATCCATTCCTT-TGA
64 ACTTTCACGAGTTCTTTCATAACTTAGGTTCC-AAAAACTATTCAAGACAATCCATTCCTTCT-A
10165714 GCAAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAAACAGTTTGTCATTT
127 G-AAATTTTCCAAACATCCCATGCTCGGA-AAATCACATCATTTGGTCAAAACAGTTTGTCATTT
*
10165777 TGTAAACAAGTTTTGGACTGTCAATT
190 TGTAAACAAGTTTTGGACTGTAAATT
* * * * * *
10165803 AATAACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTGG-CGAACTTCCAAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10165867 AACTTATTTA
Statistics
Matches: 238, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
214 5 0.02
215 191 0.80
216 40 0.17
217 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTAAATT
Found at i:10165925 original size:62 final size:62
Alignment explanation
Indices: 10165806--10166170 Score: 543
Period size: 62 Copynumber: 5.9 Consensus size: 62
10165796 GTCAATTAAT
* * * *
10165806 AACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTGG-CGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10165867 AACTTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** *
10165929 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGATTAACTTCCAAACTTGTCAAT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10165991 CACTTATTTACGTGAGAATGGTTTCTCTCTTGGTTCTTGGACGAATTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10166053 AATTTATTTACGTGAGTACTGTTTCTGTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10166115 AACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10166171 CTGAAACTTT
Statistics
Matches: 270, Mismatches: 33, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
61 34 0.13
62 236 0.87
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10166425 original size:62 final size:62
Alignment explanation
Indices: 10166328--10166454 Score: 177
Period size: 62 Copynumber: 2.0 Consensus size: 62
10166318 TCCTTGAATT
* * * *
10166328 AAAAACTTATTTACAAGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACAAGGCAATTAGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
*
10166390 AAAAACTTATTTACGTAA-G-AATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTAC--AAGGCAATTAGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10166452 AAA
1 AAA
10166455 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
62 55 0.95
63 1 0.02
64 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACAAGGCAATTAGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10166790 original size:215 final size:216
Alignment explanation
Indices: 10166390--10166885 Score: 562
Period size: 214 Copynumber: 2.3 Consensus size: 216
10166380 CGAACTTGTC
* *
10166390 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10166455 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTCATCCATTGCTTATAGAA
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGATTTCAAGTACATCCATTCCTTATAGAA
* * * * * * * *
10166520 TTTTTTCGAACATTCAAGCTCAGAAAATCCCATCTTTTGGTCTAAATAGTTTGTCA-TTTTGTAA
131 TATTTCCAAACATCCAAGCTCAGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTTGTAA
*
10166584 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * *
10166605 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGG-TCGTTGGATGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACGAACATCCGAACTTGTCAA
**
10166668 ACTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTT-AAG-ACGATCCATTCCTT-TG
65 ACTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAG-ATTTCAAGTAC-ATCCATTCCTTAT-
*
10166730 AGCAA-ATTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAAACAGTTTGTCATT
127 AG-AATATTTCCAAACAT-CCAAGCTCAGA-AAATCACATCATTTGGTCAAAACAGTTTGTCATT
10166793 TTTGTAAACAAGTTTTGGACTGTTAATT
189 TTTGTAAACAAGTTTTGGACTGTTAATT
* * * * * * *
10166821 AATAACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTGG-CGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10166885 C
66 C
10166886 ACTTATTTAC
Statistics
Matches: 236, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
213 4 0.02
214 85 0.36
215 66 0.28
216 71 0.30
217 9 0.04
218 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGATTTCAAGTACATCCATTCCTTATAGAA
TATTTCCAAACATCCAAGCTCAGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10167141 original size:184 final size:185
Alignment explanation
Indices: 10166824--10167234 Score: 589
Period size: 184 Copynumber: 2.2 Consensus size: 185
10166814 GTTAATTAAT
* * * * *
10166824 AACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTGG-CGAACTTCCAAACTTGTCAAACAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAACAC
*
10166888 TTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACATGTCAAAAACTTA
* * * *
10166953 TTTACGTGAGATTTGTTTCTCTCTTGTTTCTTGGACGAAC-TCCCAAACTTGTCAA
131 TTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACAT-CCAAACTTGTCAA
*
10167008 ACACTTATTTACGTGAGAATGGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAA-A
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAACA
* * * * *
10167072 TTTTATTTACGTGAGAATTG-TTC-CTCTTGGTTCTTGGACGAACTTCCAAACATGTGAAAAACT
65 -CTTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACATGTCAAAAACT
* *
10167135 TATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAA
129 TATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
10167192 AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
10167235 GAACATCTGA
Statistics
Matches: 203, Mismatches: 19, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
183 1 0.00
184 127 0.63
185 39 0.19
186 36 0.18
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.40
Consensus pattern (185 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAACAC
TTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACATGTCAAAAACTTA
TTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
Found at i:10167248 original size:62 final size:61
Alignment explanation
Indices: 10166824--10167238 Score: 575
Period size: 62 Copynumber: 6.8 Consensus size: 61
10166814 GTTAATTAAT
* * * *
10166824 AACTTAGTTACGTGAGAATTGTTTCTCTTTTAGTTTTTGG-CGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10166884 ACACTTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
* * *
10166947 AACTTATTTACGTGAGATTTGTTTCTCTCTTGTTTCTTGGACGAACTCCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* *
10167008 ACACTTATTTACGTGAGAATGGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10167070 AATTTTATTTACGTGAGAATTG-TTC-CTCTTGGTTCTTGGACGAACTTCCAAACATGTGAAA
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT-CAA
* * * * *
10167131 AACTTATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10167192 AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10167239 ATCTGAACTT
Statistics
Matches: 312, Mismatches: 34, Indels: 16
0.86 0.09 0.04
Matches are distributed among these distances:
60 48 0.15
61 50 0.16
62 211 0.68
63 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10167503 original size:62 final size:62
Alignment explanation
Indices: 10167406--10167532 Score: 195
Period size: 62 Copynumber: 2.0 Consensus size: 62
10167396 TCCTTGAATT
*
10167406 AAAAACTTATTTACGAGGCAATTGGTTCTCTCTTGGTTCTTGGACGAAC-TGCCGAACTTGTC
1 AAAAACTTATTTACGAAGCAATTGGTTCTCTCTTGGTTCTTGGACGAACAT-CCGAACTTGTC
* *
10167468 AAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTATTTACG-AAGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10167530 AAA
1 AAA
10167533 CTTTTACGAT
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
62 57 0.95
63 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATTTACGAAGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10167650 original size:278 final size:277
Alignment explanation
Indices: 10167128--10167732 Score: 869
Period size: 278 Copynumber: 2.2 Consensus size: 277
10167118 CAAACATGTG
* *
10167128 AAAAACTTATTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
10167193 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTT
65 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTCAAACTT
** * * *
10167258 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAGGATGATCCATTCTTTCGACCAATT
130 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACCAATT
* *
10167323 TTTCGAACATCCCATGCTCGGGAAATCACATAATTAGGTCTAAATAGTTTGTCTTTTTGTAAACA
195 TTTCGAACATCCCATGCTCGGAAAATCACATAATTAGGTCTAAATAGTTTGTCATTTTGTAAACA
*
10167388 AGTTTCGGTCCTT-GAATT
260 AGTTTCGG-CCTTCAAATT
*
10167406 AAAAACTTATTTACGAG-GCAATTGGT-TCTCTCTTGGTTCTTGGACGAACTGCCGAACTTGTCA
1 AAAAACTTATTTACGTGAG-AATT-GTATCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCA
*
10167469 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAAC
63 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTCAAAC
* * * * *
10167534 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTCTA-GAT
128 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACCA-
* * * * * *
10167598 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTACATAGTTTTTCATTTTGTAA
192 ATTTTTCGAACATCCCATGCTCGGAAAATCACATAATTAGGTCTAAATAGTTTGTCATTTTGTAA
10167663 ACAAGTTTCGGCCTTCAAATT
257 ACAAGTTTCGGCCTTCAAATT
* *
10167684 AAAAACTTATTTACGTGAGAGTTGTATCTC-CTTGGTTGTTGGACGAACT
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACT
10167733 TTAAAACTTG
Statistics
Matches: 291, Mismatches: 29, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
277 27 0.09
278 262 0.90
279 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAAA
ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTCAAACTTT
TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACCAATTT
TTCGAACATCCCATGCTCGGAAAATCACATAATTAGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTCGGCCTTCAAATT
Found at i:10167874 original size:215 final size:216
Alignment explanation
Indices: 10167468--10167963 Score: 556
Period size: 215 Copynumber: 2.3 Consensus size: 216
10167458 CGAACTTGTC
* *
10167468 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAA
* * * ** * *
10167533 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTCTAGAT
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGCTAATCCATTCCTTCTAGAA
* * * * * **
10167598 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTACATAGTTTTTCATTTTGTAA
131 AATTTCCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAA
10167663 ACAAGTTTCGGCCTTCAAATT
196 ACAAGTTTCGGCCTTCAAATT
* * * *
10167684 AAAAACTTATTTACGTGAGAGTTGTATCTC-CTTGGTTGTTGGACGAAC-TTTAAAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCT-AAACTTGTCAA
** *
10167747 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACT-ATCCATTCCTT-TGG
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAG-CTAATCCATTCCTTCT-A
10167810 GAAAATTTCC-AGACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTT
128 GAAAATTTCCGA-ACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGCCATTT
* * *
10167873 TGTAAACAAGTTTTGGACTGT-TAATT
191 TGTAAACAAGTTTCGGCCT-TCAAATT
* ** * * * * * * * *
10167899 AATAACTTAGATACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAATTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAA
10167964 AACTTATTTA
Statistics
Matches: 234, Mismatches: 38, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
214 6 0.03
215 172 0.74
216 55 0.24
217 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGCTAATCCATTCCTTCTAGAA
AATTTCCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAA
ACAAGTTTCGGCCTTCAAATT
Found at i:10168000 original size:62 final size:62
Alignment explanation
Indices: 10167902--10168071 Score: 270
Period size: 62 Copynumber: 2.7 Consensus size: 62
10167892 GTTAATTAAT
* * *
10167902 AACTTA-GATACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAATTTGTCAAA
1 AACTTATG-TACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10167964 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATGTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10168026 AACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATGTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10168072 ATCCGAACAT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
62 99 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATGTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10168336 original size:340 final size:335
Alignment explanation
Indices: 10167684--10168635 Score: 1055
Period size: 340 Copynumber: 2.8 Consensus size: 335
10167674 CCTTCAAATT
* * * * **
10167684 AAAAACTTATTTACGTGAGAGTTGTATCTC-CTTGGTTGTTGGACGAACTTTAAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10167748 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACTATCCATTCCTTTGGGAA
66 CTTTTACGATTTCTTTTATAACTT-GGTTCCTAAAAGTATTCAAGA-TATCCATT-CTTT-CGAA
** * *
10167813 AATTTCCAG-ACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTA
127 AATTTTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * ** * * *
10167877 AACAAGTTTTGGACTGTTAATTAATAACTTAGATACATGAGAATTGTTTCTCTCCTAGTTCTTGG
192 AACAAGTTTTGGCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTC-CCTTGTTCTTGG
* * * * * * *
10167942 ACGAACTTCCAAATTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATG
255 ACGAACTTTCAAACTAGTCAAAAACTTATTTACATGAGAACTGTGTCACTCTTGGTTCTTGGACG
*
10168007 AACTTCCAAACTTGTC
320 AACTTCCAAACTTATC
* * * * *
10168023 AAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10168088 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACCA
66 CTTTTACGATTTCTTTTATAACTT-GGTTCCTAAAAGTATTCAAGAT-ATCCATTCTTTCGA-AA
* * * *
10168153 ATTTTTTGAACA-TCTCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTGTA
128 ATTTTTAGAACATTC-CATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
10168217 AACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCCCTTGATTCTTG
192 AACAAGTTTTGG-CCTTAAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCCCTTG-TTCTTG
* *** * * *
10168281 AACGAACTTTTGTACTAGTCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTTTGAC
254 GACGAACTTTCAAACTAGTCAAAAACTTATTTACATGAGAACTGTGTCACTCTTGGTTCTTGGAC
*
10168346 GAACTTCCGAACTTATC
319 GAACTTCCAAACTTATC
* * *
10168363 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACG-ACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10168427 CTTTTACGATTTC-TTT-T---TTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 CTTTTACGATTTCTTTTATAACTTGGTTCCTAAAAGTATTCAAGAT-ATCCATTCTTTCGA-AAA
* * * *
10168487 TTTTTCGATCATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
129 TTTTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10168552 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTATGTGAGAATT-GTATCT-CCTTGGTTGTTGGA
194 CAAGTTTTGGCC-TTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCCCTT-GTTCTTGGA
* *
10168615 CGAACTTTCGAACTTGTCAAA
256 CGAACTTTCAAACTAGTCAAA
10168636 CTTTCACGAG
Statistics
Matches: 517, Mismatches: 83, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
332 32 0.06
333 127 0.25
334 5 0.01
337 1 0.00
338 5 0.01
339 72 0.14
340 273 0.53
341 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (335 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTGGTTCCTAAAAGTATTCAAGATATCCATTCTTTCGAAAATT
TTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTTGTTCTTGGACGAAC
TTTCAAACTAGTCAAAAACTTATTTACATGAGAACTGTGTCACTCTTGGTTCTTGGACGAACTTC
CAAACTTATC
Found at i:10168365 original size:62 final size:61
Alignment explanation
Indices: 10168299--10168426 Score: 139
Period size: 62 Copynumber: 2.1 Consensus size: 61
10168289 TTTGTACTAG
* * * * * * *
10168299 TCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTTTGACGAACTTCCGAACTTA
1 TCAAAAACTCATTTACATAAGAACTGTGTCACTCTTGGTTCTTAGACG-ACATCCAAACTTA
* * * * *
10168361 TCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGACATCCAAACTTG
1 TCAAAAACTCATTTACATAAGAACTGTGTCACTCTTGGTTCTTAGACGACATCCAAACTTA
10168422 TCAAA
1 TCAAA
10168427 CTTTTACGAT
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
61 15 0.28
62 39 0.72
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (61 bp):
TCAAAAACTCATTTACATAAGAACTGTGTCACTCTTGGTTCTTAGACGACATCCAAACTTA
Found at i:10168817 original size:888 final size:892
Alignment explanation
Indices: 10167435--10169313 Score: 3124
Period size: 888 Copynumber: 2.1 Consensus size: 892
10167425 AATTGGTTCT
*
10167435 CTCTTGGTTCTTGGACGAACTGCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
**
10167500 TTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCA
66 TTGGTTCTT-GACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTAT-A-TTCGGTTCCA
* * *
10167565 AAAAGTTTTCAAGTTAATCCATTCCTTCTAGATATTTTTCGAACATTCCATGCTCGGAAAATCCC
128 AAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCC
* *
10167630 ATCATTTGGTCTACATAGTTTTTCATTTTGTAAACAAGTTTCGGCCTTCAAATTAAAAACTTATT
193 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGCCTTCAAATTAAAAACTTATT
*
10167695 TACGTGAGAGTTGTATCTCCTTGGTTGTTGGACGAACTTTAAAACTTGTCAAACTTTCACGAGTT
258 TACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTAAAACTTGTCAAACTTTCACGAGTT
* * *
10167760 CTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACTATCCATTCCTTTGGGAAAATTTCCAGACA
323 CTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGAAAATTTCCAAACA
*
10167825 TTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGA
388 TTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGA
* *
10167890 CTGTTAATTAATAACTTAGATACATGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAA
453 CTGTTAATTAATAACTTAGATACATGAGAATTGTTTCTCTCCTAGATCTTGCACGAACTTCCAAA
* * *
10167955 TTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTT
518 CTTGTCAAAAACTTATTTACATGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10168020 GTCAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTG
583 GTCAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTG
10168085 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGA
648 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGA
*
10168150 CCAATTTTTTGAACATCTCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTG
713 CCAATTTTTTGAACATCCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTG
*
10168215 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGATTCTT
778 TAAACAAGTTTCGGTCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGATTCTT
* *
10168280 GAACGAACTTTTGTACTAGTCAAAGACTTATTTACATGAGCACTGTGTCA
843 GAACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCA
* * *
10168330 CTCTTGGTTCTTTGACGAACTTCCGAACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
10168395 TTGGTTCTTAGACG-ACATCCAAACTTGTCAAACTTTTACGATTTC-TTT-T-TT-GGTTCCAAA
66 TTGGTTCTT-GACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATATTCGGTTCCAAA
*
10168455 AAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGATCATTCCATGCTCGAAAAATCCCAT
130 AAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCAT
* *
10168520 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTA
195 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGCCTTCAAATTAAAAACTTATTTA
* **
10168585 TGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCT
260 CGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTAAAACTTGTCAAACTTTCACGAGTTCT
10168650 TTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGAAAATTTCCAAACATT
325 TTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGAAAATTTCCAAACATT
* *
10168715 CCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAACCAGTTTTGTACT
390 CCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACT
* * * *
10168780 GTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGCATGAACTTCCAAACT
455 GTTAATTAATAACTTAGATACATGAGAATTGTTTCTCTCCTAGATCTTGCACGAACTTCCAAACT
* * *
10168845 TGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
520 TGTCAAAAACTTATTTACATGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
* * *
10168910 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTCTGAA
585 CAAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTGAA
* * *
10168975 ACTTTTACGATTTCTTTTATAAGTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGC
650 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACC
* * *
10169040 AATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
715 AATTTTTTGAACATCCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTGTA
* * * *
10169105 AACAAGTTTCGGTCCTGGAATTAAAATCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGG
780 AACAAGTTTCGGTCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGATTCTTGA
* *
10169170 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
845 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCA
* * *
10169218 CTCTTGGTTCTTGGATGAACTTCGGAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
* *
10169281 TTGGTTCTTGAACGAACTTCCACACTTGTCAAA
66 TTGGTTCTTG-ACGAACATCCAAACTTGTCAAA
10169314 AACTTATTTA
Statistics
Matches: 918, Mismatches: 64, Indels: 12
0.92 0.06 0.01
Matches are distributed among these distances:
885 1 0.00
886 16 0.02
887 18 0.02
888 774 0.84
889 2 0.00
892 1 0.00
893 3 0.00
894 29 0.03
895 74 0.08
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (892 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
TTGGTTCTTGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATATTCGGTTCCAAAA
AGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATC
ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGCCTTCAAATTAAAAACTTATTTAC
GTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTAAAACTTGTCAAACTTTCACGAGTTCTT
TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGAAAATTTCCAAACATTC
CATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTG
TTAATTAATAACTTAGATACATGAGAATTGTTTCTCTCCTAGATCTTGCACGAACTTCCAAACTT
GTCAAAAACTTATTTACATGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
AAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTGAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACCA
ATTTTTTGAACATCCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTGTAA
ACAAGTTTCGGTCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGATTCTTGAA
CGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCA
Found at i:10168890 original size:62 final size:62
Alignment explanation
Indices: 10168790--10168969 Score: 252
Period size: 62 Copynumber: 2.9 Consensus size: 62
10168780 GTTAATTAAT
* * *
10168790 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGCATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTTGTCAAA
* * * * *
10168852 GACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTTGTCAAA
* * * *
10168914 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTT
10168970 CTGAAACTTT
Statistics
Matches: 104, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGCACGAACTTCCAAACTTGTCAAA
Found at i:10169177 original size:548 final size:542
Alignment explanation
Indices: 10168023--10169177 Score: 1320
Period size: 548 Copynumber: 2.1 Consensus size: 542
10168013 CAAACTTGTC
* * *
10168023 AAAAACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACATCTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC-T-TG---ATC-GAAA
* * * * * *
10168088 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACCA
60 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATCCAAGACGATCCATTCTTGCGA-CA
* *** * * * *
10168153 ATTTTTTGAACATCTCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTAGTCTTTTTGTAA
124 AATTTCCAAACATCTCATGCTCGAGAAATCACATAATTTGGTCAAAATAATTAGCCATTTTGTAA
* *
10168218 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGATTCTTGAA
189 ACAAGTTTCGGTACTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCCCTTGATTCTTGAA
**** *
10168283 CGAACTTTTGTACTAGTCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTTTGACGA
254 CGAACTTCCAAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTTGGACGA
*
10168348 ACTTCCGAACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGACAT
319 ACTTCCAAACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGACAT
* * *
10168413 CCAAACTTGTCAAACTTTTACGATTTCTTTTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
384 CCAAACTTCTCAAACTTTTACGATTTCTTTTTTGGTTCCAAAAAGTATCCAAGATAATCCATTCC
* * * *
10168478 TTCTAGAAATTTTTCGATCATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCA
449 TTCGAGAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCA
* *
10168543 TTTTGTAAACAAGTTTTGGCCTTTAAATT
514 TTTTGTAAACAAGTTTCGGCCTTGAAATT
* * *
10168572 AAAAACTTATTTATGTGAGAATT-GTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAAC-TT-G-A-TCG--AA
* * *
10168635 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGA
59 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATCCAAGACGATCCATT-CT-TGCGA
* *
10168700 -AAATTTCCAAACAT-TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTG
122 CAAATTTCCAAACATCT-CATGCTCGAGAAATCACATAATTTGGTCAAAATAATTAGCCATTTTG
* * * * * *
10168763 TAAACCAGTTT-TGTACTGTTAATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGA-T
186 TAAACAAGTTTCGGTACT-TGAATTAAAAACTTAGTTACGTG-GCAATTGGTTCTCCCTT-GATT
* * * * * * *
10168825 CTTGCATGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTT
248 CTTGAACGAACTTCCAAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTT
* * * * *
10168890 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGA
313 GGACGAACTTCCAAACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGA
* * **
10168955 CGAACATCCGAACTTCTGAAACTTTTACGATTTCTTTTATAAGTTCGGTTCCTGAAAGTATCCAA
378 CG-ACATCCAAACTTCTCAAACTTTTACGATTTC-TTT-T---TT-GGTTCCAAAAAGTATCCAA
* * * * ** *
10169020 GATGATCCATTCTTTCGAGCAATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCT
436 GATAATCCATTCCTTCGAGAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCT
* *
10169085 AAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC-TGGAATT
501 AAATAGTTTGTCATTTTGTAAACAAGTTTCGG-CCTTGAAATT
*
10169127 AAAATCTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTT
10169178 TCGAACTAGT
Statistics
Matches: 506, Mismatches: 78, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
546 2 0.00
547 6 0.01
548 280 0.55
549 58 0.11
550 6 0.01
551 1 0.00
554 3 0.01
555 129 0.25
556 21 0.04
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (542 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTGATCGAAACTTTCA
CGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATCCAAGACGATCCATTCTTGCGACAAATTTCC
AAACATCTCATGCTCGAGAAATCACATAATTTGGTCAAAATAATTAGCCATTTTGTAAACAAGTT
TCGGTACTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCCCTTGATTCTTGAACGAACTT
CCAAACTAGTCAAAGACTTATTTACATGAGCACTGTGTCACTCTTGGTTCTTGGACGAACTTCCA
AACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGACATCCAAACT
TCTCAAACTTTTACGATTTCTTTTTTGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGAGA
AATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTCGGCCTTGAAATT
Found at i:10169223 original size:62 final size:61
Alignment explanation
Indices: 10169127--10169431 Score: 400
Period size: 62 Copynumber: 5.0 Consensus size: 61
10169117 TCCTGGAATT
* * *
10169127 AAAATCTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * * *
10169189 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* *
10169251 AAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGAACGAACTTCCACACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGA-ACTTGTC
* * *
10169311 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
*
10169373 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTT
10169432 CTGAAACTTT
Statistics
Matches: 211, Mismatches: 26, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
59 1 0.00
60 51 0.24
61 7 0.03
62 148 0.70
63 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10169230 original size:340 final size:340
Alignment explanation
Indices: 10168572--10169297 Score: 917
Period size: 340 Copynumber: 2.1 Consensus size: 340
10168562 CCTTTAAATT
* * * * * *
10168572 AAAAACTTATTTATGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAA
* * *
10168636 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTCTGGGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTCTGAGAA
* *
10168701 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAATTTGCCATTTTGTAA
* * * *
10168766 ACCAGTTTTGTACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGCA
196 ACAAGTTTGGTACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGATCTTGCA
* * * *
10168831 TGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGA
261 CGAACTTCCAAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGA
10168896 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* *
10168911 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAA
* * * * * * * *
10168976 CTTTTACGATTTCTTTTATAAGTTCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTCGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTCT-GAGA
* *** * * * * * *
10169040 AATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
130 AAATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAATTTGCCATTTTGTA
* * * *
10169105 AACAAGTTTCGGTCCTG-GAATTAA-AATCTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
195 AACAAGTTT-GGTACTGTGAATTAATAA-CTTAGTTACGTGAG-AATTGGTTCTCTCTTAGATCT
* * *
10169167 TGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
257 TGCACGAACTTCCAAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
* **
10169232 ATGAACTTCGGAACTTGTC
322 ACGAACTTCCAAACTTGTC
*
10169251 AAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGAACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10169298 TTCCACACTT
Statistics
Matches: 331, Mismatches: 51, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
338 19 0.06
339 36 0.11
340 271 0.82
341 5 0.02
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTCTGAGAA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAATTTGCCATTTTGTAA
ACAAGTTTGGTACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGATCTTGCA
CGAACTTCCAAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10169351 original size:122 final size:123
Alignment explanation
Indices: 10169127--10169430 Score: 409
Period size: 122 Copynumber: 2.5 Consensus size: 123
10169117 TCCTGGAATT
*
10169127 AAAATCTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
1 AAAATCTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCCAACTAGTCAA
* * * *
10169191 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA-TGAACTTCGGAACTTGTC
64 AAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACT-AACATCCGAACTTGTC
* * *
10169251 AAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGAACGAAC-TTCCACACTTGTCAAA
1 AAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCCA-ACTAGTCAAA
* * * *
10169314 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
65 AACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACTAACATCCGAACTTGTC
* *
10169373 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACT
1 AAAATCTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCCAACT
10169431 TCTGAAACTT
Statistics
Matches: 159, Mismatches: 15, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
121 4 0.03
122 101 0.64
123 6 0.04
124 43 0.27
125 5 0.03
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (123 bp):
AAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCCAACTAGTCAAAA
ACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACTAACATCCGAACTTGTC
Found at i:10169701 original size:62 final size:62
Alignment explanation
Indices: 10169618--10169776 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 62
10169608 AATTGGTTCT
* * * * *
10169618 CTCTTGGCTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10169680 CTCTTGGTTCTTTGACGAACTTTCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * *
10169742 CTCTTGGTTCTTGGACG-ACATCCGAACTTATCAAA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10169777 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
61 14 0.17
62 69 0.83
ACGTcount: A:0.27, C:0.21, G:0.14, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10169711 original size:462 final size:464
Alignment explanation
Indices: 10168790--10169776 Score: 1588
Period size: 462 Copynumber: 2.1 Consensus size: 464
10168780 GTTAATTAAT
* * * * * *
10168790 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGCATGAACTTCCAAACTTGTCAAAGAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
* *
10168855 TTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
*
10168920 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
* * * *
10168985 TTTCTTTTATAAGTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATCATCCATTCTTTCGACCAATTTTTCGA
10169050 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* * * *
10169115 GGTCCTGGAATTAAAATCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
326 GATCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTTC
* *
10169180 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCGGAA
391 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCGAAA
10169245 CTTGTCAAA
456 CTTGTCAAA
*
10169254 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGAACGAACTTCCACACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10169317 TTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTA
66 TTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
*
10169382 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
* *
10169447 TTTCTTTTATAACTTCGGTTCTTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATCATCCATTCTTTCGACCAATTTTTCGA
10169512 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG-TTC
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
*
10169576 TGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTT
326 -GATCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTT
* *
10169641 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTC-A
390 CGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC-TTCGA
10169705 AACTTGTCAAA
454 AACTTGTCAAA
* * * * * *
10169716 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
10169777 CTTTTACGAT
Statistics
Matches: 481, Mismatches: 38, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
461 3 0.01
462 420 0.87
463 21 0.04
464 37 0.08
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (464 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATCATCCATTCTTTCGACCAATTTTTCGA
ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
GATCCTGGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTTC
GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCGAAA
CTTGTCAAA
Found at i:10169905 original size:339 final size:339
Alignment explanation
Indices: 10169251--10169991 Score: 994
Period size: 339 Copynumber: 2.2 Consensus size: 339
10169241 GGAACTTGTC
* *
10169251 AAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGAACGAAC-TTCCACACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAA
* * * * * * *
10169314 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATC
65 AACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
* * * * *
10169379 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTCTGAAACTTTTA
130 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAACTTTTA
** * * *
10169444 CGATTTCTTTTATAACTTCGGTTCTTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCTCAAAAGTATCCAAGATAATCCATTCCTTCGACCAATTTTT
* ** * *
10169509 CGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
260 CAAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10169574 TCTGATCC-TTGAATT
325 TCTG-GCCTTTAAATT
* *
10169589 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10169653 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCAAACTTGTCAAAAA
64 AAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
10169718 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTATCAAACTTTT
129 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAACTTTT
* * * *
10169782 ACGATTTCTTTTATAACTTCGGTTC-CAAAACGTATTCAAGTTAATCCATTCCTTCTA-GATATT
194 ACGATTTCTTTTATAACTTCGGTTCTCAAAA-GTATCCAAGATAATCCATTCCTTCGACCA-ATT
* *
10169845 TTTCAAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
257 TTTCAAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
10169910 AGTTTTGGCCTTTAAATT
322 AGTTCTGGCCTTTAAATT
*
10169928 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10169992 CTTTCACGAG
Statistics
Matches: 351, Mismatches: 43, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
337 1 0.00
338 60 0.17
339 166 0.47
340 120 0.34
341 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACT
TATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCTCAAAAGTATCCAAGATAATCCATTCCTTCGACCAATTTTTC
AAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
CTGGCCTTTAAATT
Found at i:10170098 original size:215 final size:215
Alignment explanation
Indices: 10169713--10170206 Score: 622
Period size: 215 Copynumber: 2.3 Consensus size: 215
10169703 CAAACTTGTC
* * * *
10169713 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * ** *
10169777 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAACGTATTCAAGTTAATCCATTCCTTCTAGAT
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAACGCATTCAAGACAATCCATTACTTCTAGAT
* * * * *
10169842 ATTTTTCAAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10169907 ACAAGTTTTGGCCT-TTAAATT
196 A-AAGTTTTGGACTGTT-AATT
* * *
10169928 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10169992 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-GCATTGAAGACGATCCATTACTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCC-AAAACGCATTCAAGACAATCCATTACTTCT-AG
*
10170055 CA-AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTG
129 -ATAATTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTG
10170119 TAAAAAGTTTTGGACTGTTAATT
193 TAAAAAGTTTTGGACTGTTAATT
* * * * * * *
10170142 AATAACTTAGTTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTGCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10170207 AACTTATTTA
Statistics
Matches: 240, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 56 0.23
215 180 0.75
216 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAACGCATTCAAGACAATCCATTACTTCTAGAT
AATTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
AAAGTTTTGGACTGTTAATT
Found at i:10170245 original size:62 final size:62
Alignment explanation
Indices: 10170145--10170569 Score: 622
Period size: 62 Copynumber: 6.9 Consensus size: 62
10170135 GTTAATTAAT
* * * * *
10170145 AACTTAGTTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTGCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10170207 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10170269 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10170331 CACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACTTCCAAACTTG-CAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
** * *
10170392 AACTTATTTAATTGAGAATT-TTT-TCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10170452 AACTTATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10170514 ATCTTATTTGCATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10170570 TTGAAACTTT
Statistics
Matches: 325, Mismatches: 35, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
59 28 0.09
60 25 0.08
61 23 0.07
62 249 0.77
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10170463 original size:183 final size:185
Alignment explanation
Indices: 10170145--10170569 Score: 622
Period size: 183 Copynumber: 2.3 Consensus size: 185
10170135 GTTAATTAAT
* * * * *
10170145 AACTTAGTTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTGCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10170210 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCAAAAACTAA
66 TTATTTAAGTGAAAATTGTTTCTCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAAAACTAA
* *
10170275 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
131 TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* *
10170330 ACACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACTTCCAAACTTG-CAAAAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* * *
10170394 CTTATTTAATTGAGAATT-TTT-TCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAAAACTT
65 CTTATTTAAGTGAAAATTGTTTCTCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAAAACTA
* *
10170457 ATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAA
130 ATTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* * *
10170513 AATCTTATTTGCATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10170570 TTGAAACTTT
Statistics
Matches: 215, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
182 1 0.00
183 140 0.65
184 3 0.01
185 22 0.10
186 49 0.23
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (185 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTAAGTGAAAATTGTTTCTCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAAAACTAA
TTTACGTGAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
Found at i:10170818 original size:62 final size:61
Alignment explanation
Indices: 10170751--10170909 Score: 167
Period size: 62 Copynumber: 2.6 Consensus size: 61
10170741 AATTGGTTCT
* * * *
10170751 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACACGAGTACTGTTTCA
1 CTCTTGGTTCTTAGACGAAC-TTCGAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
* ** ** * *
10170813 CTCTTGGTTCTTTGACGAACTTCTGAACACGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTAGACGAACTTC-GAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
* *
10170875 CTCTTGGTTCTTAGACG-ACATCCGAAGTTGTCAAA
1 CTCTTGGTTCTTAGACGAAC-TTCGAACTTGTCAAA
10170910 CTTTTACGAT
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
61 14 0.17
62 66 0.82
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (61 bp):
CTCTTGGTTCTTAGACGAACTTCGAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
Found at i:10171171 original size:339 final size:338
Alignment explanation
Indices: 10170415--10171655 Score: 1519
Period size: 339 Copynumber: 3.7 Consensus size: 338
10170405 GAGAATTTTT
* * * * * * *
10170415 TCTCTTGATTCTTGGACGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTGTCTCT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCACT
* * * * * * *
10170480 CTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTATTTGCATGAGAATTGTTTCTCTCTT
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCCCTT
* * * *
10170545 GGTTCTTGGACGAACATCCAAACTTTTGAAACTTTTACGTTTTCTTTTATAACTTCGGTTCCTGA
131 GGTTCTTGGACGAACATCCGAACTTGTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCT-A
* * * *
10170610 AAGTGTA-T---G-ATCCATTCTTTCGACAAATTTT-TCAAACATCCCACGCTCGGGAAATCGCA
195 AAGAGTATTCAAGTATCCATTCCTTCGACAAATTTTAT--AACATCCCATGCTCGGAAAATCGCA
*
10170669 TAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTAAATTAAAATCTTATTT
258 TAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTATTT
10170734 ACGTGGCAATTGGTTC
323 ACGTGGCAATTGGTTC
* ** *
10170750 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACACGAGTACTGTTTCACT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCACT
* * ** *
10170815 CTTGGTTCTTTGACGAACTTCTGAACACGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCCCTT
* * * *
10170880 GGTTCTTAGACG-ACATCCGAAGTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AA
131 GGTTCTTGGACGAACATCCGAACTTGTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTAA
* ** * * *
10170943 AGAGTATTCAAGTTAATCCATTCCTTCTAGGAATTTCTATAACATTCCATGCTCGAAAAATCCCA
196 AGAGTATTCAAG-T-ATCCATTCCTTCGACAAATTT-TATAACATCCCATGCTCGGAAAATCGCA
* * * *
10171008 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACCAGTTTTGG-CCTTTAAATTAAAAACTTATT
258 TAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCC-TTAAATTAAAAACTTATT
10171072 TACGTGAG-AATT-GTATC
322 TACGTG-GCAATTGGT-TC
* * * **
10171089 TC-CTTGGTTATTGGACGAACTTTCGAACTTGT-AAAAACTTATTTATGTGAGAATTGTTTTTCT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCACT
* * *
10171152 CTTGGTTCTTGGGGACGAACTTCCAAACTTGTCAAAAAGTTATTTACGTGAGAATTGTTTCTCCC
66 CTTGGTTCTT--GGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCCC
* *
10171217 TTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCT
129 TTGGTTCTTGGACGAACATCCGAACTTGTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCT
* * * * *
10171282 GAA-AGTATCCAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCAT-CTCGGGAAAA-C
194 AAAGAGTATTCAAG-T-ATCCATTCCTTCGACAAATTTTAT-AACATCCCATGCTC-GGAAAATC
* *
10171344 GCATAATTTGGTCTAAATAGTTTGTCTTTTTGTTAACAAGTTTCGGTCCTTGAATTAAAAACTTA
255 GCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTA
*
10171409 TTTACTTGGCAATTGGTTC
320 TTTACGTGGCAATTGGTTC
* * * * * *
10171428 TCTCTTGGTTCTTGGACGAACTTTCGAACTAGTTAAAGACTTATTTACCTGAGTACTCTTTCACT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCACT
* *
10171493 CTTGGTTCTTGGGCGAACTTCCGAACTTGTCAAAAACTTTTTTACGTAAGAATTGTTTCTCCCTT
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCCCTT
* *
10171558 GGTTCTTGGACGAACATCCGAACTTGTTAAACTTTTATGATTTCTTTTATAACTTCGATTCC-AA
131 GGTTCTTGGACGAACATCCGAACTTGTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTAA
* * * *
10171622 AAAGTATTCATGT-TCCATTCCTTCTAGAAATTTT
196 AGAGTATTCAAGTATCCATTCCTTCGACAAATTTT
10171656 TCGAACATTC
Statistics
Matches: 772, Mismatches: 110, Indels: 47
0.83 0.12 0.05
Matches are distributed among these distances:
332 7 0.01
333 1 0.00
334 44 0.06
335 120 0.16
336 18 0.02
337 33 0.04
338 37 0.05
339 357 0.46
340 119 0.15
341 36 0.05
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCACT
CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCCCTT
GGTTCTTGGACGAACATCCGAACTTGTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTAA
AGAGTATTCAAGTATCCATTCCTTCGACAAATTTTATAACATCCCATGCTCGGAAAATCGCATAA
TTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTATTTACG
TGGCAATTGGTTC
Found at i:10171203 original size:64 final size:62
Alignment explanation
Indices: 10171060--10171227 Score: 232
Period size: 64 Copynumber: 2.7 Consensus size: 62
10171050 GCCTTTAAAT
* * * *
10171060 TAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTATT--GGACGAACTTTCGAACTTG
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGGGACGAACTTCCAAACTTG
* *
10171120 TAAAAACTTATTTATGTGAGAATTGTTTTTCTCTTGGTTCTTGGGGACGAACTTCCAAACTTG
1 TAAAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGGGACGAACTTCCAAACTTG
*
10171183 TCAAAAAGTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGG
1 T-AAAAACTTATTTACGTGAGAATTGTTTCT-CCTTGGTTCTTGG
10171228 ACGAACATCT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
60 28 0.30
61 9 0.10
63 18 0.19
64 38 0.40
65 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (62 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGGGACGAACTTCCAAACTTG
Found at i:10171495 original size:62 final size:62
Alignment explanation
Indices: 10171429--10171588 Score: 194
Period size: 62 Copynumber: 2.6 Consensus size: 62
10171419 AATTGGTTCT
* * * * *
10171429 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTTAAAGACTTATTTACCTGAGTACTCTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAAAACTTATTTACCTAAGAACTCTTTCA
* * * * * * *
10171491 CTCTTGGTTCTTGGGCGAACTTCCGAACTTGTCAAAAACTTTTTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAAAACTTATTTACCTAAGAACTCTTTCA
* *
10171553 CCCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAA
10171589 CTTTTATGAT
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTTAAAAACTTATTTACCTAAGAACTCTTTCA
Found at i:10172046 original size:62 final size:62
Alignment explanation
Indices: 10171874--10172036 Score: 263
Period size: 62 Copynumber: 2.6 Consensus size: 62
10171864 AATAACTTAG
* * *
10171874 TTACGTGAGAATTGTTTCTCCCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAATTAT
* * *
10171936 TTACGTGAGAAATGTTTCTCTCTTGGTACTTGGACCAACTTCCAAACTTGTCAAAAAATTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAATTAT
*
10171998 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10172037 ATTCGAACTT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 91 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAATTAT
Done.