Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 44 of 144
Found at i:10172374 original size:62 final size:61
Alignment explanation
Indices: 10172204--10172374 Score: 198
Period size: 62 Copynumber: 2.8 Consensus size: 61
10172194 TCCTTGAATT
* * ** * *
10172204 AAAAACTTATTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACCAACTTTCGAACTAGTC
1 AAAAACTTATTTACATAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTACTC
* * * * * * *
10172266 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAATTTTCGAACTTCTC
1 AAAAACTTATTTACAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTACTC
10172328 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 AAAAACTTATTTACAT-AGAATTGTTTCTCTCTTGGTTCTTGGACGA
10172375 CATCCAAACT
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
62 88 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACATAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTACTC
Found at i:10172545 original size:339 final size:337
Alignment explanation
Indices: 10171687--10172606 Score: 1047
Period size: 340 Copynumber: 2.7 Consensus size: 337
10171677 TCCATAGTTG
* * * * * * *
10171687 TTGGACGAACATTCGAACATGTCAAACTTTCACGAGTTCTGTTATAATTTAGGTTCCTTAAAGCA
1 TTGGACGAACATTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGCA
* * * * * *
10171752 TTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAAACATTCCACGTTC-GAGAAATCAAATCA
66 TTCAAGATGATCCATTCCTTCT-AG-AAATTTTTCGAACATTCCATGCTCGGA-AAATCACATCA
* * * * *
10171814 TTTGGTCCAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACG
128 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCT-TTAATTAAAAACTTATTTACG
* * * * * *
10171879 TGAGAATTGTTTCTCCCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTATTTACGTGA
192 TG-GAATTGTATCT-CCTTGGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTTACATGA
* * * *
10171944 GAAATGTTTCTCTCTTGGTACTTGGACCAACTTCCAAACTTGTCAAAAAATTATTTACGTGAGAA
255 GAAATGTTTCACTCTTGGTACTTGGACCAACTTCCAAACTTCTCAAAAAATTATTTACATAAGAA
10172009 TTGTTTCTCTCTTGGTTC
320 TTGTTTCTCTCTTGGTTC
* * * * * * *
10172027 TTGGATGAACATTCGAACTTCTGAACCTTTTACGATTTCTTTTATGACTTCGGTTCTTGAAAGCA
1 TTGGACGAACATTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGCA
* * * * ** * * * * * *
10172092 TCCAAGATGCTCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTTGGGAAATCGCATAATTT
66 TTCAAGATGATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTT
* * * *
10172157 GGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGG
131 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG-GCCTTTAATTAAAAACTTATTTACGTGG
* * * * * *
10172222 CAATTGGATCTCTCTTGGTTCTTGGACCAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTA
195 -AATTGTATCTC-CTTGGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTTACATGAGAA
* * * * * * * *
10172287 CTGTTTCACTCTTGGTTCTTTGACGAATTTTCGAACTTCTCAAAAACTTATTTACATAAGAATTG
258 ATGTTTCACTCTTGGTACTTGGACCAACTTCCAAACTTCTCAAAAAATTATTTACATAAGAATTG
10172352 TTTCTCTCTTGGTTC
323 TTTCTCTCTTGGTTC
* * * *
10172367 TTGGACG-ACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTA
1 TTGGACGAACATTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGCA
** *
10172431 TTCAACTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTT
66 TTCAAGATGATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTT
*
10172496 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGG
131 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTT-AATTAAAAACTTATTTACGT-G
*
10172561 GAATTGTATCTCCTTGGTTGTTGGACGAACTTACGAACTTGTCAAA
194 GAATTGTATCTCCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
10172607 CTTTCATGAG
Statistics
Matches: 473, Mismatches: 99, Indels: 18
0.80 0.17 0.03
Matches are distributed among these distances:
338 34 0.07
339 164 0.35
340 272 0.58
341 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (337 bp):
TTGGACGAACATTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGCA
TTCAAGATGATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAATTAAAAACTTATTTACGTGGA
ATTGTATCTCCTTGGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTTACATGAGAAATG
TTTCACTCTTGGTACTTGGACCAACTTCCAAACTTCTCAAAAAATTATTTACATAAGAATTGTTT
CTCTCTTGGTTC
Found at i:10172703 original size:215 final size:216
Alignment explanation
Indices: 10172328--10172823 Score: 608
Period size: 215 Copynumber: 2.3 Consensus size: 216
10172318 CGAACTTCTC
* * * *
10172328 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAAA
1 AAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10172392 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAACTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAACACAATCCATTCCTTCTAGAA
* * * * * * *
10172457 ATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTAGTCAAAATAATTTGCCATTTTGTAA
*
10172522 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * * *
10172543 AAAAACTTATTGACGTGGGAATTGTATCTC-CTTGGTTGTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** * *
10172607 CTTTCATGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAACACAATCCATTCCTTCT-AG-
10172671 AAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTAGTCAAAATAATTTGCCATTTTG
129 AAATTTTCCAAACATCCCATGCTCGGA-AAATCACATCATTTAGTCAAAATAATTTGCCATTTTG
10172734 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * *
10172758 AATAACTTAGTTAAGGTGAGAATTGTTTCTCTATTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTA-TTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10172823 A
65 A
10172824 GACTTATTTA
Statistics
Matches: 236, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 17 0.07
215 168 0.71
216 22 0.09
217 29 0.12
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (216 bp):
AAAAACTTATTAACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAACACAATCCATTCCTTCTAGAA
ATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTAGTCAAAATAATTTGCCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10172941 original size:62 final size:62
Alignment explanation
Indices: 10172776--10172931 Score: 249
Period size: 62 Copynumber: 2.5 Consensus size: 62
10172766 AGTTAAGGTG
* * * *
10172776 AGAATTGTTTCTCTATTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTG
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTA
* *
10172838 AGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTA
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTA
*
10172900 AGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC
1 AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10172932 ATTCGAACTT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTA
Found at i:10172959 original size:895 final size:892
Alignment explanation
Indices: 10171672--10173824 Score: 3606
Period size: 895 Copynumber: 2.4 Consensus size: 892
10171662 ATTCCAAAAA
* * * * *
10171672 GTATCTCCATAGTTGTTGGACGAACATTCGAACATGTCAAACTTTCACGAGTTCTGTTATAATTT
1 GTATCTCCTTGGTTGTTGGACGAAC-TTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTT
* *
10171737 AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGTTCGA
65 AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
* *
10171802 GAAATCAAATCATTTGGTCCAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
130 GAAATCACATCATTTGGTCAAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* *
10171867 AACTTAGTTACGTGAGAATTGTTTCTCCCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAT
195 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10171932 TTATTTACGTGAGAAATGTTTCTCTCTTGGTACTTGGACCAACTTCCAAACTTGTCAAAAAATTA
260 TTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10171997 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATTCGAACTTCTGAACCTTTTACGA
325 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTCTGAAACTTTTACGA
* * * *
10172062 TTTCTTTTATGACTTCGGTTCTTGAAAGCATCCAAGATGCTCCATTCTTTCGACCAATTTTTTGA
390 TTTCTTTTATAACTTCGATTCCTGAAAGCATCCAAGATGATCCATTCTTTCGACCAATTTTTTGA
*
10172127 ACATCCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
455 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* * *
10172192 GATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACCAACTTTC
520 GATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGATCCCCCTTGGTTCTTGAACCAACTTTC
* * *
10172257 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAATTTTCGAA
585 GAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
*
10172322 CTTCTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTG
650 CTTCTCAAAAACTCATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTG
10172387 TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAACTTAATCCATTCCTTC
715 TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAACTTAATCCATTCCTTC
*
10172452 TAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTT
780 TAGAAATTTTTCGAACATT-CAAGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTT
*
10172517 TGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGGGAATT
844 TGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGAGAATT
*
10172566 GTATCTCCTTGGTTGTTGGACGAACTTACGAACTTGTCAAACTTTCATGAGTTCTTTTATAACTT
1 GTATCTCCTTGGTTGTTGGACGAACTT-CGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTT
*
10172631 AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATCCCATGCTCGA
65 AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
* * *
10172696 GAAATCACATCATTTAGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
130 GAAATCACATCATTTGGTCAAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* * *
10172761 AACTTAGTTAAGGTGAGAATTGTTTCTCTATTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGA
195 AACTTAGTT-ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* *
10172826 CTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
259 CTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
*
10172891 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTCTGAAACTTTTACG
324 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTCTGAAACTTTTACG
* * *
10172956 ATTTCTTTTATAACTTCTATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTG
389 ATTTCTTTTATAACTTCGATTCCTGAAAGCATCCAAGATGATCCATTCTTTCGACCAATTTTTTG
*
10173021 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACAAGTTT
454 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* * * *
10173086 TGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCCCCCTTGGTTCTTGAACGAACTTT
519 CGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGATCCCCCTTGGTTCTTGAACCAACTTT
10173151 CGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGA
584 CGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGA
* * * *
10173216 ACTTGTGAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGACATCCAAACTT
649 ACTTCTCAAAAACTCATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTT
*
10173281 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTT
714 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAACTTAATCCATTCCTT
* *
10173346 CTAGAAATTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGTCATTT
779 CTAGAAATTTTTCGAACATTCAAGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
10173411 TGTAAACCAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATT
844 TGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGAGAATT
* * * *
10173460 GTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAACATGCACGAGTTCTTTTATAACTT
1 GTATCTCCTTGGTTGTTGGACGAAC-TTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTT
* *
10173525 CGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
65 AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGA
* *
10173590 GAAATCACATCATTTGGTCAAAATAGTTTGTCATCTTGTAAACAAGTTTTGGACTGTTAATTAAT
130 GAAATCACATCATTTGGTCAAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
*
10173655 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACTTGTCAAAAAC
195 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10173720 TTATTTACGTGA-AAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTGTCAAAAACTT
260 TTATTTACGTGAGAAA-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
*
10173784 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
324 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC
10173825 TTCCAAACTT
Statistics
Matches: 1174, Mismatches: 81, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
892 1 0.00
893 152 0.13
894 462 0.39
895 559 0.48
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (892 bp):
GTATCTCCTTGGTTGTTGGACGAACTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTA
GGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAG
AAATCACATCATTTGGTCAAAATAGTTTGACATTTTGTAAACAAGTTTTGGACTGTTAATTAATA
ACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTCTGAAACTTTTACGAT
TTCTTTTATAACTTCGATTCCTGAAAGCATCCAAGATGATCCATTCTTTCGACCAATTTTTTGAA
CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCG
ATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGATCCCCCTTGGTTCTTGAACCAACTTTCG
AACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAAC
TTCTCAAAAACTCATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTGT
CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAACTTAATCCATTCCTTCT
AGAAATTTTTCGAACATTCAAGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGAGAATT
Found at i:10173201 original size:62 final size:61
Alignment explanation
Indices: 10173130--10173264 Score: 171
Period size: 62 Copynumber: 2.2 Consensus size: 61
10173120 TTGGTTCCCC
* * * *
10173130 CTTGGTTCTTGAACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACT
1 CTTGGTTCTTG-ACGAACTTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
* * * * *
10173192 CTTGGTTCTTTGACGAACTTCCGAACTTGTGAAAAACTCATTTACGTAAGAATTGTTTCTCT
1 CTTGGTTC-TTGACGAACTTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
10173254 CTTGGTTCTTG
1 CTTGGTTCTTG
10173265 GATGACATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
61 3 0.05
62 57 0.90
63 3 0.05
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (61 bp):
CTTGGTTCTTGACGAACTTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
Found at i:10173210 original size:340 final size:340
Alignment explanation
Indices: 10172543--10173500 Score: 1133
Period size: 340 Copynumber: 2.8 Consensus size: 340
10172533 CCTTTAAATT
* ** * * *
10172543 AAAAACTTATTGACGTGGGAATTGTATCTC-CTTGGTTGTTGGACGAAC-TTACGAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATT-CGAACTTGTCAA
* * * * * * *
10172606 ACTTTCATGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAG
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATT-CTTTCGAG
* * * * * * *
10172670 CAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTAGTCAAAATAATTTGCCATTTTGT
129 CAATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGT
* * * * * * * ** *
10172735 AAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTAAGGTGAGAATTGTTTCTCTATTAGTTCT
194 AAACAAGTTTTGGTCCT-TCAATTAAAAACTTA-TTTACGTGAGAATTGGTTCCCCCTTGGTTCT
* * * * *
10172799 TGGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGG
10172864 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* *
10172883 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTCTGAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTGTCAAA
** * *
10172948 CTTTTACGATTTCTTTTATAACTTCTATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * * *
10173013 ATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAA
131 ATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAA
* *
10173078 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCCCCCTTGGTTCTTGA
196 ACAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAG-AATTGGTTCCCCCTTGGTTCTTGG
* *
10173142 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACG
260 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACG
* *
10173207 AACTTCCGAACTTGTG
325 AACTTCCAAACTTGTC
* * * *
10173223 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTGTCAAA
* * * * * *
10173287 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * * * *
10173352 ATTTTTCGAACAT-TCAAGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGTCATTTTGTAA
131 ATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAA
* * * *
10173416 ACCAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATT-GTAT-CTCCTTGGTTGTTGG
196 ACAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGT-TCCCCCTTGGTTCTTGG
* *
10173479 ATGAACTTTCGAGCTTGTCAAA
260 ACGAACTTTCGAACTTGTCAAA
10173501 CATGCACGAG
Statistics
Matches: 527, Mismatches: 84, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
337 33 0.06
338 83 0.16
339 83 0.16
340 170 0.32
341 154 0.29
342 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATTCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCA
ATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAATTTGTCATTTTGTAA
ACAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCCCCCTTGGTTCTTGGA
CGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10173731 original size:62 final size:62
Alignment explanation
Indices: 10173655--10174082 Score: 660
Period size: 62 Copynumber: 6.9 Consensus size: 62
10173645 GTTAATTAAT
* * *
10173655 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10173717 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10173779 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10173841 CACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10173903 AACTTATTTACGAGAGAATT-TTGTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10173965 ATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10174027 ATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10174083 CTGAAACTTT
Statistics
Matches: 340, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
61 2 0.01
62 336 0.99
63 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10174404 original size:62 final size:60
Alignment explanation
Indices: 10174234--10174421 Score: 189
Period size: 62 Copynumber: 3.0 Consensus size: 60
10174224 TCCTTGAATT
* * * * *
10174234 AAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTGGACCAACTTTCGAACTAGTC
1 AAAAACTTATTTACGTAG-AATTGTTTCACTCTTGGTTCTTGGACGAA-TTTCGAACTTGTC
* * * * *
10174296 AAAGACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTTGACGAATTTTCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCACTCTTGGTTCTTGGACGAA-TTTCGAACTTGTC
* * * *
10174358 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGACA-TCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCACTCTTGGTTCTTGGACGA-ATTTCGAACTTGTC
10174419 AAA
1 AAA
10174422 CTTTGACAAT
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
61 14 0.14
62 87 0.84
63 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACGTAGAATTGTTTCACTCTTGGTTCTTGGACGAATTTCGAACTTGTC
Found at i:10174849 original size:62 final size:62
Alignment explanation
Indices: 10174751--10174935 Score: 230
Period size: 62 Copynumber: 3.0 Consensus size: 62
10174741 ATTAATTAAT
* *
10174751 AACTTAGT-TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTA-TATACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10174813 GACTTATATATGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATATACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * * * *
10174875 AACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGCATGAACTTTCGAACTTGTCAAA
1 AACTTATATACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10174936 CTTTCACGAG
Statistics
Matches: 106, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
61 30 0.28
62 76 0.72
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATATACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10175280 original size:216 final size:215
Alignment explanation
Indices: 10174872--10175344 Score: 558
Period size: 216 Copynumber: 2.2 Consensus size: 215
10174862 CAAACTTGTC
* * * *** *
10174872 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGCATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGCAAGAACAACCGAACTTCTCAAAC
* *
10174937 TTTCACGAGTTCTTTTATAACATAGGTTCCTGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACATAGATTCCTGAAAGCATCCAAGACGATCCATTCCTTTGAGCAA
*
10175002 ATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAGTAATTTGCCATTTTGTAAA
131 ATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAGTAATTTGCCATTTTGTAAA
*
10175067 CAAGTTTTGG-ACTGTTAATT
196 CAAGTTTTGGTACT-TGAATT
* * * *
10175087 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACAACCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGCAAGAACAACCGAACTTCTCAAA
* * * * * * *
10175152 CTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGATTCATT-CTTTCGAGC
65 CTTTCACGAGTTCTTTTATAACATAGATTCCTGAAAGCATCCAAGACGATCCATTCCTTT-GAGC
* *** * * * * *
10175216 AATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAA-TAGTTTGTCTTTTTGT
129 AAATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTC-AAAGTAATTTGCCATTTTGT
*
10175280 AAACAAGTTTTGGTCCTTGAATT
193 AAACAAGTTTTGGTACTTGAATT
* *
10175303 AAAAACTTATTTACGTG-GCAATTGGTTCCCCCTTGGTTCTTG
1 AAAAACTTATTTACGTGAG-AATT-GTTTCTCCTTGGTTCTTG
10175345 AACGAACTTT
Statistics
Matches: 216, Mismatches: 36, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
215 32 0.15
216 174 0.81
217 10 0.05
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGCAAGAACAACCGAACTTCTCAAAC
TTTCACGAGTTCTTTTATAACATAGATTCCTGAAAGCATCCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAGTAATTTGCCATTTTGTAAA
CAAGTTTTGGTACTTGAATT
Found at i:10175405 original size:62 final size:61
Alignment explanation
Indices: 10175334--10175468 Score: 171
Period size: 62 Copynumber: 2.2 Consensus size: 61
10175324 TTGGTTCCCC
* * * * *
10175334 CTTGGTTCTTGAACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACT
1 CTTGGTTCTTG-ACGAAATTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
* * * *
10175396 CTTGGTTCTTTGACGAAATTCCGAACTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCT
1 CTTGGTTC-TTGACGAAATTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
10175458 CTTGGTTCTTG
1 CTTGGTTCTTG
10175469 GATGACATCC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
61 3 0.05
62 57 0.90
63 3 0.05
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (61 bp):
CTTGGTTCTTGACGAAATTCCGAACTAGTCAAAAACTCATTTACATAAGAACTGTTTCACT
Found at i:10175808 original size:215 final size:215
Alignment explanation
Indices: 10175427--10175921 Score: 579
Period size: 215 Copynumber: 2.3 Consensus size: 215
10175417 CGAACTTGTC
* *
10175427 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGACATCCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGACATCCAAACTTGTCAAAC
* * * * * **
10175492 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 ATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAA
* * * * * *
10175557 TTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGTCATTTTGTAAA
131 TTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* **
10175622 CCAGCTTTGGTCT-TTCAATT
196 CAAGCTTTGCACTGTT-AATT
* * * * * *
10175642 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCAAACTTGTCAAA
** *
10175706 CATTCACGAGTTCTTTTATAACTTAGGTTCCTCAAAGAATTCAAGACGATCCATTCCTT-TGAGC
65 CATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCT-AG-
10175770 AAA-TTTCCAAACATTCCATGCTCA-AGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCAGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
*
10175833 TAAACAAGTTTTGCACTGTTAATT
192 TAAACAAGCTTTGCACTGTTAATT
* * * * * *
10175857 AATAACTT-TGTTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTAT-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCAAACTTGTCAA
10175921 A
64 A
10175922 AACTTATTTA
Statistics
Matches: 235, Mismatches: 38, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
214 17 0.07
215 186 0.79
216 32 0.14
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGACATCCAAACTTGTCAAAC
ATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGCTTTGCACTGTTAATT
Found at i:10175960 original size:62 final size:62
Alignment explanation
Indices: 10175867--10176285 Score: 664
Period size: 62 Copynumber: 6.8 Consensus size: 62
10175857 AATAACTTTG
* * *
10175867 TTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10175929 TTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10175991 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10176053 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACGTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10176115 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10176175 TTACGTGAG-ATTTTTGTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTAT
1 TTACGTGAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10176237 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10176286 CTGAAACTTT
Statistics
Matches: 331, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
59 3 0.01
60 51 0.15
61 3 0.01
62 269 0.81
63 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10175995 original size:554 final size:556
Alignment explanation
Indices: 10174670--10177949 Score: 3656
Period size: 554 Copynumber: 5.9 Consensus size: 556
10174660 TAAAGCATTC
* *
10174670 AACATTCCATGCTCGAGAAATCTCATCATTTGGTCAAAATAATTTGCCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
* *
10174735 TGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
66 TGCACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
* * *
10174800 CAAACTTGTCAAAGACTTATATATGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
131 CAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* * * * * * *
10174865 ACTTGTCAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGCATGAACTTTCGAACT
196 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * * * ** * ***
10174929 TGTCAAACTTTCACGAGTTCTTTTATAACATAGGTTCCTGAAAGCATTCAAGACGATCCATTCCT
261 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
* * * * *
10174994 T-TGAGCAAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTC-AAAGTAATTTG
326 TCT-AG-AAATTTTTCGAACATTCCATGCTCGGA-AAATCCCATCATTTGGTCTAAA-TAGTTTG
* * * * *
10175055 CCATTTTGTAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTC
387 TCATTTTGTAAACAAGTTTTGGTCT-TTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCTC
* *** * * * * * *
10175119 TTGGTTCTTGGAAGAACAACCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCT
451 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCT
* * * * * ***
10175184 GAAAGTATCCAAGATGATTCATT-CTTTCGAGCAATTTTTTG
516 GAAAGAATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCA
* * * * * * *
10175225 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
* * * * * * * *
10175290 TGGTC-CT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCCCCCTTGGTTCTTGAACGAAC
66 T-G-CACTGTTAATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAAC
* * * * * * *
10175352 TTTCGAACTAGTCAAAGACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTTGACGAAATTC
128 TTCCAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
10175417 CGAACTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCAA
193 CAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
10175481 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATT
258 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATT
*
10175546 CCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGT
323 CCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGT
* *
10175611 CATTTTGTAAACCAGCTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTT
388 CATTTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTT
* * * * *
10175675 GGTTGTTGGATGAACTTTCGAGCTTGTCAAACATTCACGAGTTCTTTTATAACTTAGGTTCCTCA
453 GGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGA
10175740 AAGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCA
518 AAGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCA
* *
10175779 AACATTCCATGCTCAAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
* * *
10175844 TGCACTGTTAATTAATAACTTTGTTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTC
66 TGCACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
* * *
10175909 CAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
131 CAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* * *
10175974 ACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
196 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * * * **** * * *
10176039 TTTCAAACACTTATTTACGTGAGAATTGTTTCTCT--CTT-GGTTCTTGGATGAACTTCCAAACT
261 TGTC-AA-AC-T-TTTAC----GATTTCTTT-TATAACTTCGGTTCCAAAAAGTA-TT-C-AAGT
* * ** * * * ** * * * *
10176101 T-GTCAAAAACGTATTTACGTGAGAATTGTTTC--TC-TT-GGTTCTTGGACGAACTTCCGA--A
314 TAATC-CATTCCT-TCTA---GA-AATT-TTTCGAACATTCCATGCTCGGA--AA-ATCCCATCA
* * * *** ** * *
10176159 CTT-GTCAAAAACTTA-TTTACGTGAGATTTTTGTCTCTCTTGGTTCTTGGACTAACATCCGAAC
369 TTTGGTC-TAAA--TAGTTT--GT--CA-TTTTGT-AAAC-AAGTT-TTGG--T--CTTTC-AA-
* * * * * * *
10176222 TTGTCAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTC
417 -T-T-AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTG
* * ** * * *
10176287 TGAAACTTTTACGTTTTCTTTTATAACTTCGGTTCCTGAAAG---T---GTATGATCCATTCTTT
479 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAG-ACGATCCATTCCTT
*
10176346 TGA-CAAATTTTTCA
543 TGAGCAAA-TTTCCA
* ** * * * * *
10176360 AACATCCCACACTCGGGAAATCACATAATTTGGTCTAAATAGTTTGCCTTTTTGTAAACATGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
* * * * * * *
10176425 CAGTC-CT-TGAATTAAAAACTTATTTACGTG-GAAATTGGTTCTCTCTTGGTTCTTGGACCAAC
66 -TG-CACTGTTAATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAAC
* * * * * * * *
10176487 TTTCGAACTAGTCAAAGACTTATTTACGTGAGTACTGTTTCACTCTTGGTTCTTTGACGAATTTT
128 TTCCAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * *
10176552 CGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTTGTTCTTGGACG-ACATCCGA
193 CAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
*
10176616 ACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATT
258 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATT
*
10176681 CCTTCTAGAAATTTTTCGAACATTACATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGT
323 CCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGT
* *
10176746 CATTTTGTAAACAAGTTTTGG-CCTTCAAATTAAAAACTTATTTACGTGAGAGTTGTATCTC-CT
388 CATTTTGTAAACAAGTTTTGGTCTTTC-AATTAAAAACTTATTTACGTGAGAATTGTATCTCTCT
* * * * *
10176809 TGGTTGTTGGACGAATTTTCGAACTTGTAAAACTTTCACGAGTTCTTTTATAACATAGGTTCCTT
452 TGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTG
* * *
10176874 AAAGAATTCAAGACGATCCATTCCTTTGGGAAAATTTCTA
517 AAAGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCA
* *
10176914 TACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTACCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
* *
10176979 TGGACTGTTAATTAATAACATAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
66 TGCACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
* * * * *
10177044 CAAATTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACAA
131 CAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
*
10177109 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCTGAACT
196 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
*
10177173 TGTCAAACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
261 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
*
10177238 TCTTGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
326 TCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
* * *
10177303 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAATTTATTTACGTGAGAATTGTATCTC-CTTGGT
391 TTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGT
* *
10177367 TGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAG
456 TCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAG
* * *
10177432 CATTCAAGACGATCCATTCCTTTGGGAAAATTTCCA
521 AATTCAAGACGATCCATTCCTTTGAGCAAATTTCCA
* * *
10177468 AACATTCCATGCTCTAGAAATCACATCATTTGGTCAAAATAATTTCCCATTTTGTAAACAAGTTT
1 AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
*
10177533 TGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
66 TGCACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
*
10177598 CAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
131 CAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
* *
10177663 ACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
196 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * ** * * * *
10177728 TCTAAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTT
261 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
* * * * * * * *
10177793 TCGAGCAATTTTT-GAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTTAATAGTTTGTCTT
326 TCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
* * *
10177857 TTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGT-TCTCTCTTG
391 TTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAG-AATT-GTATCTCTCTTG
*
10177920 GTTCTTGGACGAACTTTCGAACTAGTCAAA
454 GTTCTTGGACGAACTTTCGAACTTGTCAAA
10177950 GACTTATTTA
Statistics
Matches: 2285, Mismatches: 351, Indels: 178
0.81 0.12 0.06
Matches are distributed among these distances:
549 58 0.03
550 26 0.01
551 1 0.00
552 3 0.00
553 7 0.00
554 1141 0.50
555 488 0.21
556 23 0.01
557 2 0.00
558 1 0.00
559 9 0.00
560 3 0.00
561 9 0.00
562 11 0.00
563 11 0.00
564 9 0.00
565 9 0.00
566 19 0.01
567 15 0.01
568 16 0.01
569 19 0.01
570 9 0.00
571 9 0.00
572 10 0.00
573 11 0.00
574 9 0.00
575 2 0.00
576 9 0.00
577 1 0.00
578 3 0.00
579 2 0.00
580 21 0.01
581 228 0.10
582 3 0.00
583 3 0.00
584 1 0.00
585 27 0.01
586 57 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (556 bp):
AACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTT
TGCACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
CAAACTTGTCAAAGACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCT
TCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGT
TCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAG
AATTCAAGACGATCCATTCCTTTGAGCAAATTTCCA
Found at i:10176238 original size:184 final size:186
Alignment explanation
Indices: 10175867--10176285 Score: 666
Period size: 184 Copynumber: 2.3 Consensus size: 186
10175857 AATAACTTTG
* * * *
10175867 TTACGTGTGAATTGTTTCTCTCTTAGATCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTATTTA
10175932 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGT
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGT
* *
10175997 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACACTTAT
131 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACACTTAT
*
10176053 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACGTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTATTTA
* *
10176118 CGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGT
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGT
* * *
10176181 GAG-ATTTTTGTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA-ATCTTAT
131 GAGAATTGTT-TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACA-CTTAT
* *
10176237 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10176286 CTGAAACTTT
Statistics
Matches: 216, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
183 6 0.03
184 138 0.64
185 2 0.01
186 70 0.32
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (186 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTATTTA
CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACACTTAT
Found at i:10176608 original size:62 final size:60
Alignment explanation
Indices: 10176438--10176625 Score: 207
Period size: 62 Copynumber: 3.0 Consensus size: 60
10176428 TCCTTGAATT
* * * *
10176438 AAAAACTTATTTACGTGGAAATTGGTTCTCTCTTGGTTCTTGGACCAACTTTCGAACTAGTC
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAA-TTTCGAACTTGTC
* * * * *
10176500 AAAGACTTATTTACGTGAGTACTGTTTCACTCTTGGTTCTTTGACGAATTTTCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TTTCGAACTTGTC
* * *
10176562 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTTGTTCTTGGACGACA-TCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGA-ATTTCGAACTTGTC
10176623 AAA
1 AAA
10176626 CTTTTACAAT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
61 14 0.13
62 89 0.85
63 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTCGAACTTGTC
Found at i:10176943 original size:215 final size:214
Alignment explanation
Indices: 10176562--10177039 Score: 561
Period size: 215 Copynumber: 2.2 Consensus size: 214
10176552 CGAACTTGTC
* * * *
10176562 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTTGTTCTTGGACGACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA-ATCCGAACTTGTAAAAC
* * * * * **
10176627 TTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
65 TTTCACAAGTTCTTTTATAACATAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAA
* * * **
10176692 TTTTTCGAACATTACATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 TATTTCGAACATTACATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTACCATTTTGTAAA
*
10176757 CAAGTTTTGGCCT-TCAAATT
195 CAAGTTTTGGACTGT-AAATT
* * * * *
10176777 AAAAACTTATTTACGTGAGAGTTGTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA--TCCGAACTTGTAAAA
* ** * *
10176841 CTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTT-TGGGA
64 CTTTCACAAGTTCTTTTATAACATAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCT-AGA
* *
10176905 AA-ATTTCTATACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTACCATTTTG
128 AATATTTCGA-ACATTACATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTACCATTTTG
*
10176968 TAAACAAGTTTTGGACTGTTAATT
191 TAAACAAGTTTTGGACTGTAAATT
* * *
10176992 AATAACATAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
10177040 CTTCCAAATT
Statistics
Matches: 220, Mismatches: 36, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
213 1 0.00
214 22 0.10
215 181 0.82
216 16 0.07
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAATCCGAACTTGTAAAACT
TTCACAAGTTCTTTTATAACATAGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAAT
ATTTCGAACATTACATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTACCATTTTGTAAAC
AAGTTTTGGACTGTAAATT
Found at i:10177103 original size:62 final size:62
Alignment explanation
Indices: 10177002--10177162 Score: 277
Period size: 62 Copynumber: 2.6 Consensus size: 62
10176992 AATAACATAG
* * *
10177002 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAATTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTAT
*
10177064 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTAT
*
10177126 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10177163 CATCTGAACT
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 93 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTAT
Found at i:10177497 original size:215 final size:216
Alignment explanation
Indices: 10177116--10177610 Score: 635
Period size: 215 Copynumber: 2.3 Consensus size: 216
10177106 CAAACTTGTC
* *
10177116 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-AC-ATCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * ** *
10177179 ACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTTGA
65 ACTTTCACGATTCCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTGGA
* * * * * * * **
10177244 AATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AAATTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAATTTCCCATTTTGTA
*
10177309 AACAAGTTTTGGCCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
* * *
10177331 AAAAATTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10177395 CTTTCACGAGTT-CTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGGG
66 CTTTCACGA-TTCCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-GG
10177458 AAAATTTCCAAACATTCCATGCTCTAG-AAATCACATCATTTGGTCAAAATAATTTCCCATTTTG
129 AAAATTTCCAAACATTCCATGCTC-AGAAAATCACATCATTTGGTCAAAATAATTTCCCATTTTG
10177522 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * * *
10177546 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10177611 GACTTATTTA
Statistics
Matches: 241, Mismatches: 32, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
214 15 0.06
215 189 0.78
216 37 0.15
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGATTCCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTGGAA
AATTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAATTTCCCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10177647 original size:62 final size:62
Alignment explanation
Indices: 10177549--10177728 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10177539 GTTAATTAAT
* *
10177549 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10177611 GACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10177673 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10177729 CTAAAACTTT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10177957 original size:339 final size:336
Alignment explanation
Indices: 10177331--10178280 Score: 1228
Period size: 339 Copynumber: 2.8 Consensus size: 336
10177321 CCTTTAAATT
* * * * *
10177331 AAAAATTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10177395 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTT-GG-A
* * ** * * **
10177460 AATTTCCAAACATTCCATGCTCTAGAAATCACATCATTTGGTCAAAATAATTTCCCATTTTGTAA
129 AATTTTCGAACA-TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
10177525 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
193 ACAAGTTTTGGCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * * *
10177590 CGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCT-CTCTTGGTTCTTGGACG
257 CGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACG
10177654 AACTTCCAAACTTGTC
321 AACTTCCAAACTTGTC
* * *
10177670 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10177735 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTCGAGC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTT-G-GA
* * * * *
10177799 AATTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTTAATAGTTTGTCTTTTTGTAA
129 AATTTTCGAACAT-CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10177864 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGG
193 ACAAGTTTTGG-CCTTAAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGG
*
10177928 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGATG
256 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACG
**
10177993 AACTTCTGAACTTGTC
321 AACTTCCAAACTTGTC
*
10178009 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10178074 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATGGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTT-TGGAA
* * * *
10178139 AGTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 A-TTTTCGAACATCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10178204 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTGGA
194 CAAGTTTTGGCC-TTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGA
*
10178267 TGAACTTTCGAACT
257 CGAACTTTCGAACT
10178281 TGTTAAACTT
Statistics
Matches: 532, Mismatches: 67, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
338 32 0.06
339 404 0.76
340 95 0.18
341 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (336 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTTGGAAA
TTTTCGAACATCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
CTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACGAACTT
CCAAACTTGTC
Found at i:10177957 original size:893 final size:894
Alignment explanation
Indices: 10176777--10178620 Score: 2959
Period size: 893 Copynumber: 2.1 Consensus size: 894
10176767 CCTTCAAATT
* * * * * * *
10176777 AAAAACTTATTTACGTGAGAGTTGTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTAAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTAAAA
* * *
10176841 CTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGGGAA
66 CTTTCACGAGTTCTTTTATAACATAGGTTCCTGAAAGAATCCAAGACGATCCATTCCTTTGAGAA
* *
10176906 AATTTCTATACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTACCATTTTGTAA
131 AATTTCTATACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTACCATTTTGTAA
* * * *
10176971 ACAAGTTTTGGACTGTTAATTAATAACATAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* * * *
10177036 CGAACTTCCAAATTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGATG
261 CGAACTTCCAAACTAGTCAAAAACTTATTTACATGAGAACTGTTT-TACTCTTGGTTCTTGGATG
10177100 AACTTAC-AAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-A
325 AACTT-CTAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10177163 CATCTGAACTTGTCAAACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTA
389 CATCCGAACTTGTCAAACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTA
* * * *
10177228 ATCCATTCCTTCTTGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAT
454 ATCCATTCCTTATGGAAAGTTTTCGAACATT-CAAGCTCGGAAAATCCCATCATTTGGTCTAAAT
*
10177293 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAATTTATTTACGTGAGAATTGTAT
518 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTAT
10177358 CTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGT
583 CTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGT
* * *
10177423 TCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAAAATTTCCAAACATTCCATGCTCTAGAAA
648 TCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATCCCATGCTCGAGAAA
* *
10177488 TCACATCATTTGGTCAAAATAATTTCCCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACT
713 TCACATCATTTGGTCAAAACAATTTCCCATTTTGTAAACAAGTTTTGGACTGTTAATCAATAACT
10177553 TAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTAT
778 TAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTAT
10177618 TTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
843 TTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10177670 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTAAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTAAAA
* * * * * *
10177735 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTCGAG-
66 CTTTCACGAGTTCTTTTATAACATAGGTTCCTGAAAGAATCCAAGACGATCCATTCCTTT-GAGA
* * * * ** ** *
10177798 CAATTTTTGA-ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTTAATAGTTTGTCTTTTTGT
130 AAATTTCT-ATACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTACCATTTTGT
* * * *
10177862 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAATTAAAAACATAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* * * *
10177925 TGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTAGTCAAAAACTTATTTACATGAGAACTGTTTTACTCTTGGTTCTTGG
*
10177990 ATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
322 ATGAACTTCTAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10178055 AACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGT
387 AACATCCGAACTTGTCAAACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGT
10178120 TAATCCATTCCTTATGGAAAGTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAA
452 TAATCCATTCCTTATGGAAAGTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAA
10178185 TAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTA
517 TAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTA
* * *
10178250 TCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTTAAACTTTCACGAGTTCTTTTATAAGTTAGG
582 TCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGG
*
10178315 TTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATCCCATGCTCGAGAA
647 TTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATCCCATGCTCGAGAA
* **
10178380 ATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATCAATAAC
712 ATCACATCATTTGGTCAAAACAATTTCCCATTTTGTAAACAAGTTTTGGACTGTTAATCAATAAC
10178445 TTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTA
777 TTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTA
*
10178510 TTTATGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
842 TTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10178563 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
10178621 CGTCAAAAAC
Statistics
Matches: 875, Mismatches: 68, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
892 3 0.00
893 700 0.80
894 172 0.20
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (894 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTAAAA
CTTTCACGAGTTCTTTTATAACATAGGTTCCTGAAAGAATCCAAGACGATCCATTCCTTTGAGAA
AATTTCTATACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTACCATTTTGTAA
ACAAGTTTCGGACTGTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTAGTCAAAAACTTATTTACATGAGAACTGTTTTACTCTTGGTTCTTGGATGA
ACTTCTAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
TCCGAACTTGTCAAACTTTTACGATTCCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAAT
CCATTCCTTATGGAAAGTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC
CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCC
TTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATCCCATGCTCGAGAAATCA
CATCATTTGGTCAAAACAATTTCCCATTTTGTAAACAAGTTTTGGACTGTTAATCAATAACTTAG
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTATTTA
CGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10177980 original size:62 final size:61
Alignment explanation
Indices: 10177910--10178073 Score: 213
Period size: 62 Copynumber: 2.6 Consensus size: 61
10177900 TGGCAATTGG
* * * *
10177910 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGT
1 TTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACTTATTTACATAAGAACTGT
* * *
10177972 TT-TACTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
1 TTCT-CTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACTTATTTACATAAGAACTGT
*
10178034 TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 TTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10178074 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
61 4 0.04
62 82 0.92
63 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (61 bp):
TTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGT
Found at i:10178409 original size:215 final size:215
Alignment explanation
Indices: 10178007--10178503 Score: 635
Period size: 215 Copynumber: 2.3 Consensus size: 215
10177997 TCTGAACTTG
* *
10178007 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * ** **
10178072 AACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATGG
66 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATGG
* * * * * *
10178137 AAAGTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AAAGTTTCCAAACATCCAAGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTA
*
10178202 AACAAGTTTTGGCCT-TTAAA
196 AACAAGTTTTGGACTGTT-AA
* * * * * *
10178222 TTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTTA
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* ** *
10178286 AACTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGA
66 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATG-
*
10178350 GCAAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAAACAGTTTGTCATTT
130 G-AAAGTTTCCAAACAT-CCAAGCTCGGA-AAATCACATCATTTGGTCAAAACAGTTTGTCATTT
10178413 TGTAAACAAGTTTTGGACTGTTAA
192 TGTAAACAAGTTTTGGACTGTTAA
* * * *
10178437 TCAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCA
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
10178502 AA
66 AA
10178504 GACTTATTTA
Statistics
Matches: 239, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
213 2 0.01
214 89 0.37
215 118 0.49
216 30 0.13
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (215 bp):
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
AACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATGG
AAAGTTTCCAAACATCCAAGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTA
AACAAGTTTTGGACTGTTAA
Found at i:10178540 original size:62 final size:62
Alignment explanation
Indices: 10178437--10178689 Score: 382
Period size: 62 Copynumber: 4.1 Consensus size: 62
10178427 GGACTGTTAA
* * *
10178437 TCAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTG
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
* * * *
10178499 TCAAAGACTTATTTATGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
* *
10178561 TCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTCG
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
* * *
10178623 TCAAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTG
1 TCAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
10178685 TCAAA
1 TCAAA
10178690 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
61 1 0.01
62 171 0.99
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
Found at i:10179062 original size:617 final size:616
Alignment explanation
Indices: 10177885--10179244 Score: 2168
Period size: 617 Copynumber: 2.2 Consensus size: 616
10177875 TCCTTGAATT
* * * * * *
10177885 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
1 AAAAACTTATTGACGTGAG-AACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * * **
10177949 AGACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAA
65 AAACTTATTTACATGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
*
10178013 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 ACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * * *
10178078 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATGGAAAGTT
194 TACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTATAGAAAGTT
*
10178143 TTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
259 TTCAAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
10178208 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACT
324 TTTTGGCCTTTAAATTAAAAACTTATTTACGCGAGAATCGTATCTCCTTGGTTGTTGGATGAACT
* * * *
10178273 TTCGAACTTGTTAAACTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGAT
389 TTCGAACTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGAT
*
10178338 CCATTCCTTTGAGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAG
454 CCATTCCTTTGAGCAAATTTCCAAACATCCCACGCTCGAGAAATCACATCATTTGGTCAAAACAG
* *
10178403 TTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATCAATAACTTAGTTACGTGAGAATTGTTTCT
519 TTTGTCATTTTGAAAACAAGTTTTGGACTATTAATCAATAACTTAGTTACGTGAGAATTGTTTCT
10178468 CTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
584 CTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10178501 AAAGACTTATTTATGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTGACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10178566 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTCGTCAAAAAC
66 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10178631 TTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* *
10178696 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAATTTTT
196 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTATAGAAAGTTTT
* * *
10178761 CAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGTCATTTTGTAAACCAGT
261 CAAACATT-CAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10178826 TTTGGTCTTTCAATTAAAAACTTATTTACGCGAGAATCGTATCTCCTTGGTTGTTGGATGAACTT
325 TTTGGCCTTTAAATTAAAAACTTATTTACGCGAGAATCGTATCTCCTTGGTTGTTGGATGAACTT
* *
10178891 TTGAGCTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATC
390 TCGAACTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATC
** *
10178956 CATTCCTTTGAGCAAATTTCCAAACATTTCACGCTCGAGAAATCACATCATTTGGTCAAAATAGT
455 CATTCCTTTGAGCAAATTTCCAAACATCCCACGCTCGAGAAATCACATCATTTGGTCAAAACAGT
*
10179021 TTGTCATTTTGAAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTC
520 TTGTCATTTTGAAAACAAGTTTTGGACTATTAATCAATAACTTAGTTACGTGAGAATTGTTTCTC
*
10179086 TCTTAGTTCTTGGACGAACTTCCAAACTTTTC
585 TCTTAGTTCTTGGACGAACTTCCAAACTTGTC
* *
10179118 AAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTGACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10179183 AATTTATTGACATGAGAATTGTTTCTCTCTTAGTT-TTGGGACGAACATCCAAAGTTGTCAAA
66 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTCCAAACTTGTCAAA
10179245 CTTTTACGAT
Statistics
Matches: 682, Mismatches: 58, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
616 241 0.35
617 441 0.65
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (616 bp):
AAAAACTTATTGACGTGAGAACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTATAGAAAGTTTT
CAAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGCCTTTAAATTAAAAACTTATTTACGCGAGAATCGTATCTCCTTGGTTGTTGGATGAACTTT
CGAACTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCC
ATTCCTTTGAGCAAATTTCCAAACATCCCACGCTCGAGAAATCACATCATTTGGTCAAAACAGTT
TGTCATTTTGAAAACAAGTTTTGGACTATTAATCAATAACTTAGTTACGTGAGAATTGTTTCTCT
CTTAGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10179157 original size:62 final size:62
Alignment explanation
Indices: 10179059--10179244 Score: 277
Period size: 62 Copynumber: 3.0 Consensus size: 62
10179049 ATTAATTAAT
*
10179059 AACTTAGTT-ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTTTCAAA
1 AACTTA-TTGACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10179121 AACTTATTGACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACTTCCAAACTTGTCAAA
1 AACTTATTGACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10179183 AATTTATTGACATGAGAATTGTTTCTCTCTTAGTT-TTGGGACGAACATCCAAAGTTGTCAAA
1 AACTTATTGACGTGAGAATTGTTTCTCTCTTAGTTCTT-GGACGAACTTCCAAACTTGTCAAA
10179245 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
61 4 0.04
62 109 0.96
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTGACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10179497 original size:62 final size:62
Alignment explanation
Indices: 10179399--10179584 Score: 275
Period size: 62 Copynumber: 3.0 Consensus size: 62
10179389 ATTAATTAAT
* * * *
10179399 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
**
10179461 AACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
* * *
10179523 ATCTTATTTACGTGAGAATTGTTTCC-CTCTTGGTTCTTGGGTGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTG-TTCCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
10179585 CTATTATGAT
Statistics
Matches: 112, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
62 108 0.96
63 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
Found at i:10179517 original size:340 final size:339
Alignment explanation
Indices: 10178896--10180821 Score: 2353
Period size: 340 Copynumber: 5.7 Consensus size: 339
10178886 AACTTTTGAG
* * * * ** * **
10178896 CTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* * * * * *
10178961 CTT-TGAGCAAA-TTTCCAAACATTTCACGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTT
66 CTTCT-AG-AAATTTTTCGAACATTCCATGCTCGGA-AAATCCCATCATTTGGTCTAAATAGTTT
* *
10179023 GTCATTTTGAAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTC
128 GTCATTTTGTAAACAAGTTTTGGACT-TTAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTC
* *
10179088 TTAGTTCTTGGACGAACTTCCAAACTTTTCAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTG
192 TTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * *
10179153 GTTCTTCGACGAACTTCCAAACTTGTCAAAAATTTATTGACATGAGAATTGTTTCTCTCTTAGTT
257 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTT
10179218 -TTGGGACGAACATCCAAA
321 CTTGGGACGAACATCCAAA
* ** *
10179236 GTTGTCAAACTTTTACGATTTCTTTTACGACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* *
10179301 CTTCTAGAAATTATTT-GAACATTCCATACTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGC
66 CTTCTAGAAATT-TTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGT
* *
10179365 CAGTTTGTAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTT
130 CATTTTGTAAACAAGTTTTGGACT-TTAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTT
* * *
10179430 AGTTCTTGGATGAACTTCCAAACTTTTCAAAAACTTATTTACGTGAGAATTGTTCCTCTCTTGGT
194 AGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * *
10179495 TCTTGGACAAACTTCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCT
259 TCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCT
*
10179560 TGGG-TGAACATCCAAA
323 TGGGACGAACATCCAAA
* * * ** *
10179576 CTTGTCAAACTATTATGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* * * * * **
10179641 TTTCGAGTAATTTTTCGAACATTCCATGCTC-GAGAAATCACATAATTTGGTCTAAATAGTTCAT
66 CTTCTAGAAATTTTTCGAACATTCCATGCTCGGA-AAATCCCATCATTTGGTCTAAATAGTTTGT
* * * * * * *
10179705 CTTTTTGTAAACAAGTTTCGTTACTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTAT
130 CATTTTGTAAACAAGTTTTG-GACTTTAATTAAAAACTTAGTTACGTGAG-AATTGTTTCTCTCT
* * * * * * * *
10179769 TGGTT-TTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGG
193 TAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
*
10179833 TTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGCTT
258 TTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTG-TT
*
10179897 CTT-GGACGAACATCCGAA
321 CTTGGGACGAACATCCAAA
*
10179915 CTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* *
10179980 CTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAGCCCATCATTTGGTCTAAATAGTTTGT
66 CTTCTAGAAA-TTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGT
*
10180045 CATTTTGTAAACAAGTTTTGGACTGTTAATTAATAAATAACTTAGTCACGTGAGAATTG-TT-TC
130 CATTTTGTAAACAAGTTTTGGACT-TTAA-T--TAAA-AACTTAGTTACGTGAGAATTGTTTCTC
*
10180108 TCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCT
190 TCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
10180173 TGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
255 TGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-G
*
10180238 TTC-TGGGACGAACATCCGAA
319 TTCTTGGGACGAACATCCAAA
* * ** * * * *
10180258 CTTGTCAAACTTTTACGATTTCATTTATAACTTTGGTTCCTGAAAGCATTCGAGATGATCTATTC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* * * * * * * * *
10180323 TTTCGAGCAATTTTTTGAGCAATCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
66 CTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTC
* * * ** *
10180388 TTTTTGTAAACAAGTTTCGGTCCTCGAATTAAAAACTTATTTACGTG-GTAATTCG-TTCTCTCT
131 ATTTTGTAAACAAGTTTTGG-ACTTTAATTAAAAACTTAGTTACGTGAG-AATT-GTTTCTCTCT
* * * * * * * * * * *
10180451 TGGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTAATTTACATGAGTACTATTTCACTCTTGG
193 TAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
* *
10180516 TTCTTGGATC-AACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTT
258 TTCTTGGA-CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-TT
*
10180580 CTT-AGACGAACATCCAAA
321 CTTGGGACGAACATCCAAA
* *
10180598 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATGC
1 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
* *
10180663 CTTCTAGAAATTTTTCTAACATTCCATGCTC-GAAAAGTCCGATCATTTGGTCTAAATAGTTTGT
66 CTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAA-TCCCATCATTTGGTCTAAATAGTTTGT
* * * * *
10180727 CATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAAGTTATTTATGTGAGAATTGTATCTC-CTT
130 CATTTTGTAAACAAGTTTTGGACTTT-AATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTT
* * * *
10180791 GGTTGTTGGATGAACTTTCAAACTTGTCAAA
194 AGTTCTTGGACGAACTTCCAAACTTGTCAAA
10180822 CTTTCACGAG
Statistics
Matches: 1364, Mismatches: 187, Indels: 71
0.84 0.12 0.04
Matches are distributed among these distances:
337 1 0.00
338 20 0.01
339 240 0.18
340 790 0.58
341 20 0.01
342 76 0.06
343 197 0.14
344 19 0.01
345 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTC
CTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTC
ATTTTGTAAACAAGTTTTGGACTTTAATTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTAG
TTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
TTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGG
GACGAACATCCAAA
Found at i:10179853 original size:62 final size:62
Alignment explanation
Indices: 10179736--10179923 Score: 220
Period size: 62 Copynumber: 3.0 Consensus size: 62
10179726 TACTTGAATT
* * * * * *
10179736 AAAAACTTATTTACGT-GGCAATTGGTTCTCTATTGGTT-TTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATAGG-AACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
10179797 AAAGACTTATTTACAT-GAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACATAG-GAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10179859 AAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATAGGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10179921 AAA
1 AAA
10179924 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
61 29 0.27
62 79 0.72
63 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACATAGGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10180192 original size:62 final size:61
Alignment explanation
Indices: 10180083--10180266 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 61
10180073 ATTAATAAAT
* * * *
10180083 AACTTAGTCACGTGAGAATTGTT-TCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10180143 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATT-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10180205 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATT-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10180267 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
60 18 0.16
61 2 0.02
62 94 0.82
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10180289 original size:682 final size:679
Alignment explanation
Indices: 10178841--10180821 Score: 2736
Period size: 682 Copynumber: 2.9 Consensus size: 679
10178831 TCTTTCAATT
* * * * * * ** *
10178841 AAAAACTTATTTACGCGAGAATCGTATCTC-CTTGGTTGTTGGATGAACTTTTGAGCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACATCCGAACTTGTCAAA
* * * * *
10178905 CTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGC
66 CTATTACGATTTCTTTTATAACTTA-GTTCCTGAAAGAATTCAAGATGATCCATT-CTTTCGAGC
* * * * * * * * *
10178969 AAATTTCCAAACATTTCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAA
129 AATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
* * * * * * *
10179034 AACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
194 AACAAGTTTCGTACT-TGAATTAAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGG
* * * * * * * * * *
10179099 ACGAACTTCCAAACTTTTCAAAAACTTATTGACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACG
257 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
* * * *
10179164 AACTTCCAAACTTGTCAAAAATTTATTGACAT-GAGAATTGTTTCTCTCTTAG-TT-TTGGGACG
322 AACTTCCGAACTTGTCAAAAACTTATTTACGTAG-GAATTGTTTCTCTCTT-GCTTCTT-GGACG
* * *
10179226 AACATCCAAAGTTGTCAAACTTTTACGATTTCTTTTACGACTTCGTTTCCAAAAAGTATTCAAGA
384 AACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGA
* *
10179291 TAATCCATTCCTTCTAGAAATTATTT-GAACATTCCATACTCGGAAAATCCCATCATTTGGTCTA
449 TAATCCATTCCTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAGCCCATCATTTGGTCTA
* * *
10179355 AATAGTTTGCCAGTTTGTAAACAAGTTTTGGAC--T-ATTAATTAATAACTTAGTTACGTGAGAA
514 AATAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTAATTAATAAATAACTTAGTTACGTGAGAA
* *
10179417 TTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTTTCAAAAACTTATTTACGTGAGAATTG
579 TTG-TT-TCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTA
10179482 TTCCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
642 TTCCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
* * *
10179520 AAAATCTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGG-TGAACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGGATGAACATCCGAACTTGTCAA
* * *
10179584 ACTATTATGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGT
65 ACTATTACGATTTCTTTTATAACTT-AGTTCCTGAAAGAATTCAAGATGATCCATTCTTTCGAGC
**
10179649 AATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTCATCTTTTTGTA
129 AATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
*
10179714 AACAAGTTTCGTTACTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTATTGGTT-TTGG
194 AACAAGTTTCG-TACTTGAATTAAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGG
10179778 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
257 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
10179843 AACTTCCGAACTTGTCAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
322 AACTTCCGAACTTGTCAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
*
10179908 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGATAA
387 ATCCAAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGATAA
10179973 TCCATTCCTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAGCCCATCATTTGGTCTAAAT
452 TCCATTCCTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAGCCCATCATTTGGTCTAAAT
*
10180038 AGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAAATAACTTAGTCACGTGAGAATT
517 AGTTTGTCATTTTGTAAACAAGTTTTGGACT-TTAATTAATAAATAACTTAGTTACGTGAGAATT
* *
10180103 GTTTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTC
581 GTTTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTCC
*
10180168 TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
646 TCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
*
10180202 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACATCCGAACTTGTCAAA
* * * * * *
10180267 CTTTTACGATTTCATTTATAACTTTGGTTCCTGAAAGCATTCGAGATGATCTATTCTTTCGAGCA
66 CTATTACGATTTCTTTTATAAC-TTAGTTCCTGAAAGAATTCAAGATGATCCATTCTTTCGAGCA
* * * * *
10180332 ATTTTTTGAGCAATCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
130 ATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * *
10180397 ACAAGTTTCGGTCCTCGAATTAAAAACTTATTTACGTGGTAATTCGTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTC-GTACTTGAATTAAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGA
* * *
10180462 CAAACTTTCGAACTTGTCAAAGACTAATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATC-
258 CGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA-CG
* *
10180526 AACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTAGACGAAC
322 AACTTCCGAACTTGTCAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAAC
* *
10180591 ATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAA
387 ATCCAAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGATAA
* * * *
10180656 TCCATGCCTTCTAGAAA-TTTTTCTAACATTCCATGCTC-GAAAAGTCCGATCATTTGGTCTAAA
452 TCCATTCCTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAG-CCCATCATTTGGTCTAAA
* * * * *
10180719 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA--ATTAAA-AAGTTATTTATGTGAGAATT
516 TAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTAATTAATAAATAACTTAGTTACGTGAGAATT
* * * *
10180781 GTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
581 GTTTCT-CTTAGTTCTTGGATGAACTTCCAAACTTGTCAAA
10180822 CTTTCACGAG
Statistics
Matches: 1166, Mismatches: 115, Indels: 42
0.88 0.09 0.03
Matches are distributed among these distances:
678 22 0.02
679 261 0.22
680 243 0.21
681 21 0.02
682 378 0.32
683 211 0.18
684 30 0.03
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (679 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGATGAACATCCGAACTTGTCAAA
CTATTACGATTTCTTTTATAACTTAGTTCCTGAAAGAATTCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
CAAGTTTCGTACTTGAATTAAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGA
ACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACT
TCCGAACTTGTCAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCC
AAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCGGTTCCAAAAAGTATTCAAGATAATCCA
TTCCTTCTAGAAATTTTTTCGAACATTCCATACTCGGAAAAGCCCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGACTTTAATTAATAAATAACTTAGTTACGTGAGAATTGTTTC
TCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTCCTCTCT
TGGTTCTTGGACAAACTTCCAAACTTGTC
Found at i:10180575 original size:62 final size:61
Alignment explanation
Indices: 10180418--10180606 Score: 193
Period size: 62 Copynumber: 3.0 Consensus size: 61
10180408 TCCTCGAATT
* *
10180418 AAAAACTTATTTACGTGGTAATTCG-TTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAG-AATT-GTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
* * * * * * *
10180480 AAAGACTAATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATC-AACTTCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGA-CAAACTTCCGAACTTGTC
* * * * *
10180542 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTAGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
10180604 AAA
1 AAA
10180607 CTTTTACGAT
Statistics
Matches: 102, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
61 1 0.01
62 99 0.97
63 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
Found at i:10181023 original size:215 final size:215
Alignment explanation
Indices: 10180542--10181023 Score: 634
Period size: 215 Copynumber: 2.2 Consensus size: 215
10180532 CGAACTTGTC
* * * * *
10180542 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTAGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * **
10180607 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATGCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATGCCTTCTAGAA
* * * *
10180672 ATTTTTCTAACATTCCATGCTCGAAAAGTCCGATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 A-TTTCCAAACATTCCATGCTCGAAAAGTCCGATCATTTGGTCAAAATAGTTTGCCATTTTGTAA
*
10180737 ACAAGTTTTGGTCTTTAAATT
195 ACAAGTTTTGGACTTTAAATT
* * * * *
10180758 AAAAAGTTATTTATGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
** *
10180822 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATGCCTTCT-AG-
*
10180886 AAA-TTCCAAACATTCCATGCTCGAGAAA-TCAC-CTCATTTGGTCAAAATAGTTTGCCATTTTG
129 AAATTTCCAAACATTCCATGCTCGA-AAAGTC-CGATCATTTGGTCAAAATAGTTTGCCATTTTG
10180948 TAAACAAGTTTTGGACTGTT-AATT
192 TAAACAAGTTTTGGACT-TTAAATT
* *
10180972 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
10181024 TGAACTAGTT
Statistics
Matches: 229, Mismatches: 31, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
214 94 0.41
215 106 0.46
216 29 0.13
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATGCCTTCTAGAA
ATTTCCAAACATTCCATGCTCGAAAAGTCCGATCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
CAAGTTTTGGACTTTAAATT
Found at i:10181154 original size:62 final size:62
Alignment explanation
Indices: 10180975--10181160 Score: 282
Period size: 62 Copynumber: 3.0 Consensus size: 62
10180965 GTTAATTAAT
* * * *
10180975 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTAGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* *
10181037 AACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * *
10181099 AACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
10181161 CTTTTACAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
Found at i:10181380 original size:62 final size:63
Alignment explanation
Indices: 10181273--10181396 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 63
10181263 TCTTTAAATT
* *
10181273 AAAAACTTATTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
1 AAAAACTTAGTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTA
10181336 AAAAACTTAGTTACGTGAGAATTGT-T-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
1 AAAAACTTAGTTACGTGAGAATTGTATATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGT
10181397 CAAACTTTCA
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
61 4 0.07
62 30 0.52
63 24 0.41
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (63 bp):
AAAAACTTAGTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTA
Found at i:10181652 original size:62 final size:62
Alignment explanation
Indices: 10181555--10181740 Score: 264
Period size: 62 Copynumber: 3.0 Consensus size: 62
10181545 TTAATTAATT
* * ** *
10181555 AACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTAGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * *
10181617 AACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * * *
10181679 AACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
10181741 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
Found at i:10181909 original size:579 final size:579
Alignment explanation
Indices: 10180758--10181975 Score: 2296
Period size: 580 Copynumber: 2.1 Consensus size: 579
10180748 TCTTTAAATT
* * * * * *
10180758 AAAAAGTTATTTATGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10180822 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCA
10180887 AATTCCAAACATTCCATGCTCGAGAAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
131 AATTCCAAACATTCCATGCTCGAGAAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
*
10180952 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC
10181017 GAACTTTTGAACTAGTTAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAA
261 GAACTTTTGAACTAGTTAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAA
*
10181082 CTTCTGAACTTGTCAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
326 CTTCCGAACTTGTCAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
*
10181147 CCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGTTTGTCATTTTGAA
391 CCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGAA
10181212 AAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
456 AAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
10181277 ACTTATTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
521 ACTTATTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
10181336 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
*
10181401 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCA
10181466 AATTCCAAACATTCCATGCTCGAGAAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
131 AATTCCAAACATTCCATGCTCGAGAAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
10181531 CAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
196 CAAGTTTTGGACTGTTAATTAA-TAACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
10181596 CGAACTTTTGAACTAGTTAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGA
260 CGAACTTTTGAACTAGTTAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGA
10181661 ACTTCCGAACTTGTCAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
325 ACTTCCGAACTTGTCAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
*
10181726 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGA
390 TCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGA
10181791 AAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAA
455 AAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAA
*
10181856 AATTTATTTACGTGAGAATTGTA-ATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
520 AACTTATTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
*
10181915 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
10181976 AAAAAACTTA
Statistics
Matches: 625, Mismatches: 13, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
578 26 0.04
579 279 0.45
580 320 0.51
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (579 bp):
AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCA
AATTCCAAACATTCCATGCTCGAGAAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC
GAACTTTTGAACTAGTTAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAA
CTTCCGAACTTGTCAAAAACTTATTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGAA
AAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAA
ACTTATTTACGTGAGAATTGTATATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTA
Found at i:10181950 original size:62 final size:62
Alignment explanation
Indices: 10181853--10182037 Score: 273
Period size: 62 Copynumber: 3.0 Consensus size: 62
10181843 TCTTTAAATT
* * * *
10181853 AAAAATTTATTTACGTGAGAATTGTAATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTA
1 AAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTA
*
10181915 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTA
* ** *
10181977 AAAAACTTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGGTGAACATCCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
10182038 CAAACTATTA
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
61 4 0.04
62 108 0.96
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTA
Found at i:10182041 original size:301 final size:302
Alignment explanation
Indices: 10181490--10182066 Score: 883
Period size: 301 Copynumber: 1.9 Consensus size: 302
10181480 CATGCTCGAG
*
10181490 AAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAATT
1 AAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAATA
* * *
10181555 AACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTAGTTAAAAAC
66 AACTTAGTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTAAAAAAC
* * * *
10181620 TTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
131 TTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTA
* * * *
10181685 TTTACTTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
196 TTTACGTAAGAATTGTTTCCCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTATTACGA
10181750 TTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGAA
261 TTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGAA
* * *
10181792 AAATC-CCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTAAATTAA
1 AAATCACC-TCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTT-AATTAA
* * * *
10181855 -AAATTTATTTACGTGAGAATTGTAATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTAAAA
64 TAAACTTAGTTACGTGAGAATTAT-ATCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTAAAA
*
10181918 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAAC
128 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAAC
* **
10181983 TTATTTACGTGAGAATTGTTTCCCTCTTGGTTCTTGGGTGAACATCCAAACTTGTCAAACTATTA
193 TTATTTACGTAAGAATTGTTTCCCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTATTA
*
10182048 TGATTTCTTTTATAACTTC
258 CGATTTCTTTTATAACTTC
10182067 AGTTTCTGAA
Statistics
Matches: 248, Mismatches: 24, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
301 190 0.77
302 58 0.23
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (302 bp):
AAATCACCTCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAATA
AACTTAGTTACGTGAGAATTATATCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTAAAAAAC
TTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTA
TTTACGTAAGAATTGTTTCCCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTATTACGA
TTTCTTTTATAACTTCGGTTCCAAAAAGCTTGTCATTTTGAA
Found at i:10182297 original size:62 final size:62
Alignment explanation
Indices: 10182195--10182445 Score: 317
Period size: 62 Copynumber: 4.0 Consensus size: 62
10182185 CCCTTAAATT
* * ** * *
10182195 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATAAACTTTCAAACTTTTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC
* * * * *
10182257 AAAGACTTATTTACATGAGTATTGTTTCACTCTT-AGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGA-TTCTTGGACGAACTTCCAAACTTGTC
* * * *
10182319 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGCTTCTTTGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC
* *
10182381 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATT-CGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAAC-TTCCAAACTTGTC
10182443 AAA
1 AAA
10182446 CTTTTACGAT
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 1 0.01
62 161 0.99
63 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC
Found at i:10182763 original size:215 final size:214
Alignment explanation
Indices: 10182381--10182876 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 214
10182371 CAAACTTGTC
* * *
10182381 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * **
10182446 CTTTTACGATTTCTTTTATAACTTCGGTTCGAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
** ** * * * * *
10182511 TTTTTTTGAAAAATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
130 -TACTTCCAAAAATCCATACTCGAAAAATCACATCATTTAGTCAAAATAGTTTGCCATTTTGTAA
* *
10182576 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTCGACTGTT-AATT
* *
10182597 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGAATCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10182661 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
10182725 AA-ACTTCCAAAAATTCCATACTCGAGAAATCACATCATTTAGTCAAAATAGTTTGCCATTTTGT
128 AATACTTCCAAAAA-TCCATACTCGAAAAATCACATCATTTAGTCAAAATAGTTTGCCATTTTGT
10182789 AAACAAGTTTTCGACTGTTAATT
192 AAACAAGTTTTCGACTGTTAATT
* * * *
10182812 AATAACTTAGTTACGTGAGAATTGCTTCTCTCTT-AGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGA-TTCTTGGACGAACTTTCGAACTTGTCAA
10182876 A
64 A
10182877 ACCTTATTTA
Statistics
Matches: 240, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
214 8 0.03
215 172 0.72
216 60 0.25
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAT
ACTTCCAAAAATCCATACTCGAAAAATCACATCATTTAGTCAAAATAGTTTGCCATTTTGTAAAC
AAGTTTTCGACTGTTAATT
Found at i:10182924 original size:62 final size:61
Alignment explanation
Indices: 10182815--10183000 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 61
10182805 GTTAATTAAT
* * * *
10182815 AACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAA
* * *
10182876 AACCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCATATTTGCCGAA
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC-AA
* * * *
10182939 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACTAACATCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAA
10183000 A
1 A
10183001 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
61 5 0.05
62 100 0.92
63 4 0.04
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAA
Found at i:10183332 original size:61 final size:62
Alignment explanation
Indices: 10183171--10183339 Score: 216
Period size: 61 Copynumber: 2.7 Consensus size: 62
10183161 TTAACGTGGC
* * *
10183171 AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGAATTATTGACATGAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAATTATTGACATAAG
* * * * * *
10183233 TACTGTTTCACTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA-AACTTATT-ACGTAAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAA-TTATTGACATAAG
* *
10183294 AATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10183340 CTTTTACGAT
Statistics
Matches: 90, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
61 46 0.51
62 44 0.49
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (62 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAATTATTGACATAAG
Found at i:10183591 original size:62 final size:62
Alignment explanation
Indices: 10183493--10183678 Score: 318
Period size: 62 Copynumber: 3.0 Consensus size: 62
10183483 GTTAATTAAT
* *
10183493 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10183555 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACATGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10183617 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10183679 CTTTTATGAT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 117 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10183645 original size:339 final size:340
Alignment explanation
Indices: 10182597--10183795 Score: 1556
Period size: 340 Copynumber: 3.5 Consensus size: 340
10182587 TCTTTAAATT
* ** * *
10182597 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGAATCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
* * * * * * *
10182661 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCCTTCGAGCA
* * * * * * * * *
10182726 AACTTCCAAAAATTCCATACTC-GAGAAATCACATCATTTAGTCAAAATAGTTTGCCATTTTGTA
131 AATTTTCGAACATTCCATACTCGGA-AAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTA
10182790 AACAAGTTTTCGACTGTTAATTAATAACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTCGACTGTTAATTAATAACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGG
* *
10182855 ACGAACTTCCAAACTTGTCAAAACCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA
260 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
10182920 AACTTCCATATTTGCC
325 AACTTCCAAACTTGTC
*
10182936 GAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACT-AACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA-TGAACATCCGAACTTGTCAA
*
10183000 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCTTTCGAGC
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCCTTCGAGC
* * * * *
10183065 -AATTTTTGAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGC
130 AAATTTTCG-AACATTCCATACTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
10183129 AAATAAG-TTTCGATCCT-TGAATTAAAAACTT-TTTAACGTG-GCAATTGGTTCTCTCTTGGTT
194 AAACAAGTTTTCGA--CTGTTAATTAATAACTTAGTT-ACGTGAG-AATTGCTTCTCTCTTAGTT
* * * * * * *
10183190 CTTGGACGAACTTTCGAACTTGTCAAAGAA-TTATTGACATGAGTACTGTTTCACTCTTGGTTCT
255 CTTGGACGAACTTCCAAACTTGTCAAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* **
10183254 TGGACGAACATCTGAACTTGTC
319 TGGACGAACTTCCAAACTTGTC
* *
10183276 AAAAACTTA-TTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
* * ** * * *
10183340 CTTTTACGATTTCTTTTATGAGTTCGGTTCCCAAAAGTATTCAAGATAATCCATTCCTTCTAG-A
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCCTTCGAGCA
* *
10183404 AATTTTCGAACATTCCATACTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 AATTTTCGAACATTCCATACTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10183469 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTTCGACTGTTAATTAATAACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGA
10183534 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10183599 ACTTCCAAACATGTC
326 ACTTCCAAACTTGTC
* * *
10183614 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
* * * *
10183679 CTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCGAGATGATCCATTCTTTCGAGTA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCCTTCGAGCA
* * * * * * *
10183744 ATTTTTCGAGCAATCCATGCTCGGGAAATCGTATAATTTTGTCTAAATAGTT
131 AATTTTCGAACATTCCATACTCGGAAAATCGCATAATTTGGTCTAAATAGTT
10183796 CCATGCTTGA
Statistics
Matches: 733, Mismatches: 109, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
337 4 0.01
338 171 0.23
339 265 0.36
340 288 0.39
341 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCCTTCGAGCA
AATTTTCGAACATTCCATACTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTCGACTGTTAATTAATAACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10183947 original size:62 final size:61
Alignment explanation
Indices: 10183871--10184242 Score: 426
Period size: 62 Copynumber: 6.0 Consensus size: 61
10183861 GTTAATTAAT
* * * *
10183871 AACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10183933 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGCCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10183995 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCGAACTTGTCAAA
*
10184057 AACTTATTT--GTGCAAGAATTGTTTCTCTCTTCGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTG--AGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** * * * * * * *
10184119 GACTTATTGCCATGAGTACTGTTTCACTATTGGTTCTTGGACAAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10184181 AACTTATTTATGTAAGAATTGTTCCTCTCTTGCTTCTCT-GACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCT-TGGACGAACTTCCGAACTTGTCAAA
10184243 CTTTTACGAT
Statistics
Matches: 264, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
60 3 0.01
61 2 0.01
62 255 0.97
63 2 0.01
64 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10184201 original size:186 final size:186
Alignment explanation
Indices: 10183885--10184242 Score: 520
Period size: 186 Copynumber: 1.9 Consensus size: 186
10183875 TAGTTACGTG
* * *
10183885 AGAATTGCTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGA
1 AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
* * * *
10183950 ATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTGAGAATT
66 ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
* *
10184015 GTTTCTCTCTTGCTTCT-TGGACTAACATCCGAACTTGTCAAAAACTTATTTGTGCA
131 GTTCCTCTCTTGCTTCTCT-GACGAACATCCGAACTTGTCAAAAACTTATTTGTGCA
* * * * * * *
10184071 AGAATTGTTTCTCTCTTCGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTGCCATGAGT
1 AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
** * *
10184136 ACTGTTTCACTATTGGTTCTTGGACAAACTTCTGAACTTGTCAAAAACTTATTTATGTAAGAATT
66 ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
10184201 GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAA
131 GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAA
10184243 CTTTTACGAT
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
186 150 0.99
187 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (186 bp):
AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAAAACTTATTTGTGCA
Found at i:10184653 original size:62 final size:62
Alignment explanation
Indices: 10184555--10185103 Score: 401
Period size: 62 Copynumber: 9.0 Consensus size: 62
10184545 GAGAAATCAT
* * * *
10184555 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10184617 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10184679 AACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAGCATCCGAACTTGTC--A
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * **** * *
10184739 AAC-T-TTTAC----GATTTCTTT-TATAACTTCGGTTCCAT--A--AAGTTTGTCA-TTTTGAA
1 AACTTATTTACGTGAGAATTGTTTCTCT--CTT-GGTT-CTTGGACGAACTTCCAAACTTGTCAA
10184792 A
62 A
* * * * * * ** *** ** *
10184793 AATCTCATCATTT-GGTCTA-AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTT-TAAA--T
1 AA-CT--T-ATTTACGT-GAGAATTGTTTCTC-TCTTGGT--TCTTG-GACGAACTTCCAAACTT
10184852 -T-AAA
57 GTCAAA
* * *
10184856 AACTTATTTACTTGAGAATTGTATATCTC-CTT-GTTCTTGGACGAACTTTCAAACTTGTAAAA
1 AACTTATTTACGTGAGAATTGT-T-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10184918 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10184980 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCATAA-TTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA-AACTTGTCAAA
* *
10185042 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10185104 CTTTTACGAT
Statistics
Matches: 385, Mismatches: 62, Indels: 80
0.73 0.12 0.15
Matches are distributed among these distances:
52 3 0.01
53 5 0.01
54 10 0.03
55 4 0.01
56 4 0.01
57 6 0.02
58 11 0.03
59 6 0.02
60 21 0.05
61 12 0.03
62 284 0.74
63 12 0.03
64 2 0.01
65 2 0.01
66 1 0.00
67 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10185362 original size:62 final size:62
Alignment explanation
Indices: 10185257--10185383 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10185247 TCCTTGAATT
* * * *
10185257 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* * *
10185319 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10185381 AAA
1 AAA
10185384 CTTTTAGGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10185490 original size:280 final size:278
Alignment explanation
Indices: 10184977--10185594 Score: 886
Period size: 280 Copynumber: 2.2 Consensus size: 278
10184967 CAAACTTATA
* * *
10184977 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCATAATTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAA
* * *
10185041 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
** * * *
10185106 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCACTCTTTCGAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCACTCCTTCGAGAAAT
* *
10185171 TTCTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAA
195 TTCTCGAACATTCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTC--ATT-TAAAA
* *
10185236 AA-AAGTTTTGGTCCTTGAATT
257 AACAAGTTTCGGTCCTTAAATT
* *
10185257 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10185322 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * *
10185387 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCACTCCTTCGAGAAATT
* *
10185452 TTTCGAACATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
196 TCTCGAACATTCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
*
10185516 AAGTTTCGGTCTTTAAATT
260 AAGTTTCGGTCCTTAAATT
* * * *
10185535 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGAACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
10185595 TAAACTTTCA
Statistics
Matches: 303, Mismatches: 31, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
277 35 0.12
278 43 0.14
279 1 0.00
280 220 0.73
281 4 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCACTCCTTCGAGAAATT
TCTCGAACATTCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTAAAAAACA
AGTTTCGGTCCTTAAATT
Found at i:10185752 original size:215 final size:217
Alignment explanation
Indices: 10185319--10185816 Score: 587
Period size: 215 Copynumber: 2.3 Consensus size: 217
10185309 CGAACTTGTC
* * * * * * *
10185319 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTCGAACTTGTCAAA
* * * * * *
10185384 CTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * * * *
10185449 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
131 ATTTCTCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
*
10185514 ACAAGTTTCGGTCTTTAAATT-
196 ACAAGTTTCGGACTTTAAATTA
* * * * *
10185535 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGAACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTCGAACTTGTCAAA
** *
10185599 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
**
10185663 AAATTTCT-AAACATTCCATGCTCA-AGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTCTCAAACATTCCATGCTCAGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTAA
* * *
10185726 TAAATAAGTTTTGGACTCTT-AATTA
193 AAAACAAGTTTCGGACT-TTAAATTA
* *
10185751 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC-CTGGATGAACTTTCGAACTTGTCA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTC-GGACGAACTTTCGAACTTGTCA
10185815 AA
64 AA
10185817 GACTTATTTA
Statistics
Matches: 235, Mismatches: 39, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
214 2 0.01
215 142 0.60
216 38 0.16
217 25 0.11
218 28 0.12
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTCGGACTTTAAATTA
Found at i:10185863 original size:62 final size:62
Alignment explanation
Indices: 10185755--10186002 Score: 336
Period size: 62 Copynumber: 4.0 Consensus size: 62
10185745 TAATTAAAAT
* * * * *
10185755 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10185817 GACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10185879 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10185941 AACTTATTCACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10186003 CTTTTACGAT
Statistics
Matches: 162, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 160 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10186252 original size:62 final size:62
Alignment explanation
Indices: 10186154--10186342 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10186144 TCCTTGAATT
* * * *
10186154 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATAAACTTTCAAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTC
* * * *
10186216 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTC
* * * * *
10186278 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTC
10186340 AAA
1 AAA
10186343 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCAAACTTGTC
Found at i:10186336 original size:402 final size:403
Alignment explanation
Indices: 10185535--10186342 Score: 1113
Period size: 402 Copynumber: 2.0 Consensus size: 403
10185525 TCTTTAAATT
* * * * * * *
10185535 AAAAAGTTATTTACGTGAGAATTGTATCTCCTAGGTTCTCGAACGAACTTTCGAACTTGTTAAAC
1 AAAAACTTATTCACGTAAGAATTGTATCTCCTAGGCTCTCGAACGAACATCCGAACTTGTCAAAC
*
10185600 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCCTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
* *
10185665 ATTTCTAAACATTCCATGCTCAAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCTAAACATTCCATGCTCAAGAAATCACATAATTTGGTCAAAACAGTTTGTCATTTTGTAAA
* * * *
10185730 TAAGTTTTGGACTCTTAATTAAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGG
196 CAAGTTTCGGACTCTTAATTAAAATAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCCTGG
* * *
10185795 ATGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACG
261 ATAAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACG
* * *
10185860 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAAC
326 AACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGACGAAC
10185925 ATCCGAACTTGTC
391 ATCCGAACTTGTC
* * * *
10185938 AAAAACTTATTCACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTCACGTAAGAATTGTATCTC-CTAGGCTCTCGAACGAACATCCGAACTTGTCAAA
* * * * * *
10186003 CTTTTACGATTTCCTTTATAGCTTCGGTT-CTTGAAAGTATTCAAGATGATCCATTCTTTTGAGC
65 CTTTCACGAGTTCCTTTATAACTTAGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTTGAGC
* * * ** * * * *
10186067 AATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTTGTCTAAACAGTTTGTCTTTTTGTA
129 AAATTTCTAAACATTCCATGCTCAAGAAATCACATAATTTGGTCAAAACAGTTTGTCATTTTGTA
* * *
10186132 AACAAGTTTCGGTC-CTTGAATT-AAA-AACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCT
194 AACAAGTTTCGGACTCTT-AATTAAAATAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCC
* *
10186194 TGGATAAACTTTCAAACTTTTCAAAAACTTATTTACATGAGTATTGTTTCT-CTCTTGGTTCTTG
258 TGGATAAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTG
* * *
10186258 GACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAC
322 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGAC
*
10186323 GAACATTCGAACTTGTC
387 GAACATCCGAACTTGTC
10186340 AAA
1 AAA
10186343 CTTTTACGAT
Statistics
Matches: 353, Mismatches: 48, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
402 168 0.48
403 36 0.10
404 149 0.42
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (403 bp):
AAAAACTTATTCACGTAAGAATTGTATCTCCTAGGCTCTCGAACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCCTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCTAAACATTCCATGCTCAAGAAATCACATAATTTGGTCAAAACAGTTTGTCATTTTGTAAA
CAAGTTTCGGACTCTTAATTAAAATAACTTAGTTACGTGAGAATTGGTTCTCTATTGGTTCCTGG
ATAAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGACGAAC
ATCCGAACTTGTC
Found at i:10186615 original size:62 final size:62
Alignment explanation
Indices: 10186493--10186619 Score: 155
Period size: 62 Copynumber: 2.0 Consensus size: 62
10186483 TCTTTCAATT
** * * *** *
10186493 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAGCTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* * *
10186555 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10186617 AAA
1 AAA
10186620 CTTTTATGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10186845 original size:278 final size:275
Alignment explanation
Indices: 10186216--10187108 Score: 1297
Period size: 278 Copynumber: 3.2 Consensus size: 275
10186206 CAAACTTTTC
* * *
10186216 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10186281 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10186346 TTACGATTTCTGTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAATT
131 TTACGATTTCT-TTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAGAAATT
* * * *
10186411 TTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACCA
194 TTTCGAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
10186476 GTTTTGGTCTTTCAATT
259 GTTTTGGTCTTTAAATT
** * *
10186493 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAGCTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10186558 AACTTATTTACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * ** * *
10186623 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTACGATTTCTT-TATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTC-TTCTAGAAATT
* * * * * *
10186688 TTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGAAAATC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
10186753 AGTTTTGGTCCTTGAATT
258 AGTTTTGGTCTTTAAATT
*
10186771 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10186836 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10186901 TTAGGATTTCTTTTATAACTTC-ATTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
131 TTACGATTTC-TTTATAACTTCGA-TTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAGAAAT
* ***
10186965 TTTTCGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
193 TTTTCGAACATTCCATGCTCGGAAAAT-CCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
10187030 AAGTTTTGGTCTTTAAATT
257 AAGTTTTGGTCTTTAAATT
* * * *
10187049 AAAAAGTTATTTACATGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACATGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10187109 TAAACTTTCA
Statistics
Matches: 549, Mismatches: 59, Indels: 16
0.88 0.09 0.03
Matches are distributed among these distances:
276 2 0.00
277 225 0.41
278 318 0.58
279 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCTTCTAGAAATTTT
TCGAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCTTTAAATT
Found at i:10186873 original size:62 final size:62
Alignment explanation
Indices: 10186771--10186897 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10186761 TCCTTGAATT
* * * *
10186771 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10186833 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10186895 AAA
1 AAA
10186898 CTTTTAGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10187251 original size:215 final size:216
Alignment explanation
Indices: 10186833--10187329 Score: 621
Period size: 215 Copynumber: 2.3 Consensus size: 216
10186823 CGAACTTGTC
* * * *
10186833 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
10186898 CTTTTAGGATTTCTTTTATAACTTCATTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACCTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * *
10186963 ATTTTTCGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
131 ATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
*
10187028 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTCTT-AATT
* * * * * *
10187049 AAAAAGTTATTTACATGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10187113 CTTTCACGAGTTCTTTTATAACCT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACCTCA-GTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
10187176 CAAATTTCT-AAACATTCCATGCTC-GAGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
129 -AAATTTCTCAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10187238 TGTAAATAAGTTTTGGACTCTTAATT
191 AAAAAACAAGTTTTGGACTCTTAATT
* *
10187264 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10187329 A
65 A
10187330 GACTTATTTA
Statistics
Matches: 238, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
214 5 0.02
215 145 0.61
216 58 0.24
217 30 0.13
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACCTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTTGGACTCTTAATT
Found at i:10187366 original size:62 final size:62
Alignment explanation
Indices: 10187268--10187515 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10187258 TTAATTAAAT
* * * *
10187268 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10187330 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10187392 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10187454 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10187516 CTTTTACGAT
Statistics
Matches: 163, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 163 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10188259 original size:62 final size:62
Alignment explanation
Indices: 10188161--10188406 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10188151 GTTAATTAAT
* * *
10188161 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10188223 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10188285 AACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10188345 AACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10188407 CTTTTACGAT
Statistics
Matches: 173, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
60 56 0.32
61 4 0.02
62 113 0.65
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10188376 original size:122 final size:124
Alignment explanation
Indices: 10188161--10188406 Score: 424
Period size: 122 Copynumber: 2.0 Consensus size: 124
10188151 GTTAATTAAT
10188161 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10188226 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10188285 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10188348 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAA
66 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10188407 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
122 94 0.81
123 2 0.02
124 20 0.17
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10188742 original size:62 final size:62
Alignment explanation
Indices: 10188558--10188746 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
10188548 TCCTTGAATT
* * * *
10188558 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
10188620 AAAAACTTATTTACATGAGTATTGTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10188682 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10188744 AAA
1 AAA
10188747 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10188999 original size:62 final size:62
Alignment explanation
Indices: 10188897--10189023 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10188887 TCTTTCAATT
* * * *
10188897 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
* * *
10188959 AAAAACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
10189021 AAA
1 AAA
10189024 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
Found at i:10189254 original size:278 final size:278
Alignment explanation
Indices: 10188620--10190068 Score: 2221
Period size: 278 Copynumber: 5.2 Consensus size: 278
10188610 CAAACTTGTC
* * *
10188620 AAAAACTTATTTACATGAGTATT-GTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTT-CTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAA
* * *
10188684 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * ** * * *
10188749 TTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAA
130 TTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAA
* * ** * *
10188813 TTTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAA
194 TTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAA
* * *
10188877 CCAGTTTTGGTCTTTCAATT
259 CAAGTTTTGGTCCTTGAATT
*
10188897 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10188962 AACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10189027 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * * *
10189092 TTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTAGTCGTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
10189157 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
10189175 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10189240 AACTTATTTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
10189305 TTATGATTTCTTATATAACTTCAGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * *
10189370 TTTCAAACATTCCATGCTCAGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
10189435 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
* *
10189453 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAGCTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10189518 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10189583 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10189648 TTTCGAACATTTCATGCTCGGGAGATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10189712 AAGTTTTGGTCCTTGAATT
260 AAGTTTTGGTCCTTGAATT
*
10189731 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10189796 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** * *
10189861 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAAT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG-ATCCATTCTTTCTAGCAAT
* * * ***
10189925 TTTTCGAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCTAAATAGTTTGTCATTTAAAAAA
195 TTTTCGAACATTCCATGCTCGGGAAAT-CACATAATTTGATCTAAATAGTTTGTCATTTTGTAAA
* *
10189989 CAAGTTTTGGTCTTTAAATT
259 CAAGTTTTGGTCCTTGAATT
* * * * *
10190009 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10190069 TAAACTTTCA
Statistics
Matches: 1085, Mismatches: 79, Indels: 16
0.92 0.07 0.01
Matches are distributed among these distances:
276 1 0.00
277 227 0.21
278 854 0.79
279 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGTCCTTGAATT
Found at i:10189277 original size:62 final size:62
Alignment explanation
Indices: 10189175--10189301 Score: 193
Period size: 62 Copynumber: 2.0 Consensus size: 62
10189165 TCCTTGAATT
* * * *
10189175 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
*
10189237 AAAAACTTATTTACGTAAGAATT-GTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGT-TCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10189299 AAA
1 AAA
10189302 CTTTTATGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 2 0.03
62 57 0.97
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10189573 original size:62 final size:62
Alignment explanation
Indices: 10189453--10189579 Score: 166
Period size: 62 Copynumber: 2.0 Consensus size: 62
10189443 TCCTTGAATT
* * ** * *
10189453 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAGCTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAATTCCAAACTTGTC
* *
10189515 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-CAAATATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAAT-TCCAAACTTGTC
10189577 AAA
1 AAA
10189580 CTTTTATGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 2 0.04
62 54 0.96
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAATTCCAAACTTGTC
Found at i:10189806 original size:62 final size:62
Alignment explanation
Indices: 10189731--10189857 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10189721 TCCTTGAATT
* * * * *
10189731 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10189793 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10189855 AAA
1 AAA
10189858 CTTTTAGGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10190211 original size:215 final size:216
Alignment explanation
Indices: 10189793--10190289 Score: 621
Period size: 215 Copynumber: 2.3 Consensus size: 216
10189783 CGAACTTGTC
*
10189793 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * *
10189858 CTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACCTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
* * *
10189923 ATTTTTCGAACATTCCATGCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
131 ATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
*
10189988 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTCTT-AATT
* * * * * *** *
10190009 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
**
10190073 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACCTAGGTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCT-AG
10190136 CAAATTTCT-AAACATTCCATGCTC-GAGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
129 -AAATTTCTCAAACATTCCATGCTCGGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10190198 TGTAAATAAGTTTTGGACTCTTAATT
191 AAAAAACAAGTTTTGGACTCTTAATT
* * *
10190224 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
10190289 A
65 A
10190290 AACTTATTTA
Statistics
Matches: 237, Mismatches: 36, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
214 4 0.02
215 145 0.61
216 61 0.26
217 27 0.11
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACCTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTTGGACTCTTAATT
Found at i:10190293 original size:834 final size:829
Alignment explanation
Indices: 10188342--10190351 Score: 2114
Period size: 834 Copynumber: 2.4 Consensus size: 829
10188332 CAAACTTGTC
* * * * * *
10188342 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAA
* * * *
10188407 CTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCAAGATGATCCATTCTTTCGAGC-
65 CTTTTACGAGTTCTTTTATAACCTAGGTTCTTGAAAGCATTCAAGACGATCCATTCTTT-GAGCA
* * * * * * * * * *
10188471 AATTTTTCGAGCAATCCATGCTCGAGAAATCGCATAATTTTGTCTAAACAGTTTGTCTTTTTGTA
129 AATTTAT-AAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
* * *
10188536 AACAAGTTTCGG-TCCTTGAATTAAA-AACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTT
193 AA-AAGTTTTGGCT-CTT-AATTAAATAACTTAGTTACGTGAGAATTGTTTCTCT-TTGGTTCTT
* * *
10188599 GGA-TGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATT-GTTCCTCTCTTGGTTCTTG
254 GGACT-AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGGTT-CTCTCTTGGTTCTTG
10188662 GACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAC
317 GACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAC
* * * *
10188727 GAACATCCGATCTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAG
382 AAACATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAG
* ** *
10188792 GTAATCCATTACTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAA
447 ATAATCCATTACTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAA
* * * *
10188857 CTAGTTTGTCATTTTGTAAACCAGTTTTGGTCTTTCAATTAAAAACTTATTTATGTGAGAATTGG
512 ATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGG
*
10188922 TTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGCATTGTTTC
577 TTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTC
* *
10188987 TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGT
642 TCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTAGGATTTCTTATATAACTTCGGT
** * * * * *
10189052 TCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAGCATTTCATGCTCGGGAAA
707 TCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAA
* *** *
10189117 TCACATAATTTGATCTAAATAGTTAGTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
772 TCACATAATTTGATCTAAATAGTTAGTCATTTAAAAAACAAGTTTTGGTCCTTAAATT
*
10189175 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT--AA
** * * ** * *
10189240 AACTTATTTACGTAAG-AATTGTGTCTCTCTTGGTTCTTGGACGAA-CATCCAA-ACTTG-T-CA
63 AAC-T-TTTACG--AGTTCTTTTATAAC-CTAGGTTCTT-GA--AAGCATTCAAGAC--GATCCA
** * ** * ** * * * *
10189300 AACTTTTATG-ATTTCTTATATAAC-TT-CA-GTTCCTGAAAGT-A-TTCA--AGAT-AATCCAT
118 TTCTTTGA-GCAAAT-TTATA-AACATTCCATGCTCGAGAAA-TCACATCATTTGGTCAA--AAT
** * * * ** * * * *
10189356 TCTTTCTAGCAATTTT-TCAAACA-TTCCAT-GCTCAGGAAATCACATAA-TTTGAT-C-T-A-A
177 AGTTTGT--C-ATTTTGT-AAAAAGTT--TTGGCTC--TTAATTAAATAACTTAGTTACGTGAGA
* * * ** * * ** *
10189413 ATAGTTTGTCTTT--TT-GTAAAC-AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAA
234 ATTGTTTCTCTTTGGTTCTTGGACTAA-CTTTCGAACTTG--TCAAAAACTTATTTACGTGAGAA
* * *
10189474 TTGGTTCTCTCTTGATTCTTGGATGAGCTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTG
296 TTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTG
* * *
10189539 TTTCTCTCTTGGTTCTTGGACAAATATCCAAACTTGTCAAACTTTTATGATTTCTTATATAACTT
361 TTTCTCTCTTGCTTCTTGGACAAACATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTT
* ** * * * *
10189604 CGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAATTTTTCGAACATTTCATGCTCG
426 CGATTCCAAAAAGTATTCAAGATAATCCATTAC-TTCTAGAAATTTTTCAAACATTCCATGCTCG
* * *
10189668 GGAGATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAACAAGTTTTGGTCCTTGAATTA
490 GAAAATC-CATAATTTGATCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCCTTCAATTA
*
10189732 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAAA
553 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAA
10189797 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTT
618 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTT
* *
10189862 TAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAATT
683 TAGGATTTCTTATATAACTTCGGTTCCAAAAAGTATTCAAGATG-ATCCATTCCTTCTAGAAATT
* * *
10189926 TTTCGAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
747 TTTCGAACATTCCATGCTCGGAAAAT-CACATAATTTGATCTAAATAGTTAGTCATTTAAAAAAC
*
10189990 AAGTTTTGGTCTTTAAATT
811 AAGTTTTGGTCCTTAAATT
* * * * *
10190009 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAA
* *
10190073 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTT-AAAGTATTCAAGACGATCCATTCCTTTGAGC
65 CTTTTACGAGTTCTTTTATAACCTAGGTT-CTTGAAAGCATTCAAGACGATCCATT-CTTTGAGC
*
10190137 AAATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
128 AAATTTATAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
10190202 AATAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
193 AA-AAGTTTTGG-CTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCT-TTGGTTCTTG
* * * * *
10190267 GACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGAC
255 GACTAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* *
10190332 GAACATCCGAACTTGTCAAA
320 GAACTTTCGAACTTGTCAAA
10190352 CTTTTACGAT
Statistics
Matches: 928, Mismatches: 178, Indels: 141
0.74 0.14 0.11
Matches are distributed among these distances:
824 3 0.00
825 9 0.01
826 12 0.01
827 35 0.04
828 24 0.03
829 14 0.02
830 10 0.01
831 16 0.02
832 15 0.02
833 282 0.30
834 386 0.42
835 17 0.02
836 16 0.02
837 13 0.01
838 18 0.02
839 29 0.03
840 14 0.02
841 12 0.01
842 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (829 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTAAAAC
TTTTACGAGTTCTTTTATAACCTAGGTTCTTGAAAGCATTCAAGACGATCCATTCTTTGAGCAAA
TTTATAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAA
AGTTTTGGCTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTTTGGTTCTTGGACTAA
CTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
TCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCA
AACTTGTCAAACTTTTACGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCAT
TACTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTT
GATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGT
TCTTGGACGAACATCCAAACTTGTCAAACTTTTAGGATTTCTTATATAACTTCGGTTCCAAAAAG
TATTCAAGATGATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCACATAAT
TTGATCTAAATAGTTAGTCATTTAAAAAACAAGTTTTGGTCCTTAAATT
Found at i:10190328 original size:62 final size:62
Alignment explanation
Indices: 10190228--10190351 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
10190218 TTAATTAAAT
* * *
10190228 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
*
10190290 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
10190352 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (62 bp):
AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10190441 original size:772 final size:770
Alignment explanation
Indices: 10189237--10191120 Score: 2698
Period size: 771 Copynumber: 2.4 Consensus size: 770
10189227 CGAACTTGTC
* * * * *
10189237 AAAAACTTATTTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGT-AGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* * * * * ** *
10189302 CTTTTATGATTTCTTATATAACTTCA-GTTCCTGAAAGTATTCAAGATAATCCATT-CTTTCTAG
64 CTTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAG
* * * * *
10189365 C-AATTTTTCAAACATTCCATGCTC-AGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTT
127 CAAATTTCT-AAACATTCCATGCTCGA-GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
10189428 GTAAACAAGTTTTGGTC-CTTGAATTAAA-AACTTATTTACGTGAGAATTGGTTCTCTCTTGATT
190 GTAAACAAGTTTTGGACTCTT-AATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTT
* *
10189491 CTTGGA-TGAGCTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCT
254 CTTGGACT-AACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCT
* * *
10189555 TGGACAAATATCCAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTAT
318 TGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTTCGGTTCCTGAAAGTAT
* *
10189620 TCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATTTCATGCTCGGGAGATCACATAATTTG
383 TCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTG
*
10189685 ATCTAAATAGTTTGTCTTCTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAG
448 ATCTAAATAGTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAACTTATTTACGTG-G
* *
10189750 -AATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAA
512 CAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAA
* * *
10189814 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAA
577 CTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAA
* *
10189879 CTTC-GTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGA-ACATTCCATG
642 CTTCAG-TTCC-AAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAGA-AATCCACG
* * *
10189942 CTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAACAAGTTTTGGTCTTTAAA
704 CTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAA
10190007 TT
769 TT
* * * *
10190009 AAAAAGTTATTTACGTGAGAATTGTATCTCCTAGGTTCTCGGACGAACTTTTGAACTTGTTAAAC
1 AAAAACTTATTTACGT-AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
*
10190074 TTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
10190139 ATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
130 ATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
10190204 TAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 CAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
10190269 CTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGA
260 CTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * *
10190334 ACATCCGAACTTGTCAAACTTTTACGATTTCCTT-TATAGCTTCGGTTCTTGAAAGTATTCAAGA
325 ACATCCAAACTTGTCAAACTTTTACGATTT-CTTATATAACTTCGGTTCCTGAAAGTATTCAAGA
* * *
10190398 TGATCCATTCTTT-TGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTA
389 TGATCCATTCTTTCT-AGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTA
* * * * *
10190462 AATAGTTTGTTTTTTTGTAAACAAGTTTTGATCCTTGAATTAATAACTTTTTTACGTGGCAATTT
453 AATAGTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAACTTATTTACGTGGCAATTG
* * * * *
10190527 GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAGACTTATTTACATGAGTACTGTTT
518 GTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTT
* * * *
10190592 CACTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAG
583 CACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAG
* ** *
10190657 TTCCAAAAGTATTTAAGTTAATCCATTCCTTCTAGAAATTTTTTGAGAAATCCACGCTCGAAAAA
648 TTCCAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAGAAATCCACGCTCGAAAAA
* * ***
10190722 TCCCATCATTTTGTCTCAATAGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATT
713 TCCCATCATTTGGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAATT
* * * *
10190780 AAAAACTTATTTACGTACAAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAATTTGTTAAAC
1 AAAAACTTATTTACGTA-GAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
* *
10190845 TTTCACAAGTTCTTTTATAACTTAGGTTCCTTACAGTATTCAAGACGATCCATTCCTTTGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
* *
10190910 ATTTCCAAACATTCCATACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
130 ATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
10190975 CAAGTTTTGGACTGTTAATT-AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
195 CAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
10191039 CGAACTTCCAAACTTGTC-AAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGA
260 CTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10191103 ACTTCCAAACTTGTCAAA
325 ACATCCAAACTTGTCAAA
10191121 AACTTATTTA
Statistics
Matches: 997, Mismatches: 102, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
769 59 0.06
770 60 0.06
771 448 0.45
772 425 0.43
773 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (770 bp):
AAAAACTTATTTACGTAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAA
TTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
TAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG
ATCCATTCTTTCTAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAAT
AGTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTT
CTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCAC
TCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTC
CAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAGAAATCCACGCTCGAAAAATCC
CATCATTTGGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAATT
Found at i:10190458 original size:494 final size:493
Alignment explanation
Indices: 10189515--10190567 Score: 1406
Period size: 494 Copynumber: 2.1 Consensus size: 493
10189505 CGAACTTGTC
* * * * *
10189515 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACT-TTCGAACTTGTTAA
* * * * * * *
10189579 ACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGC
64 ACTTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGC
* * * * * *
10189644 AATTTTTCGAACATTTCATGCTCGGGAGATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTA
129 AATTTCTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCTTCTTGTA
* *
10189709 AACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGG
194 AACAAGTTTTGGACCTTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGG
* * *
10189774 ACTAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
259 ACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACG
* * *
10189839 AACATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA
324 AACATCCAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTCAAGA
*
10189904 GAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATGCCATCATTTGGTCTAA
389 GAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATGCCATAATTTGGTCTAA
* *
10189969 ATAGTTTGTCATTTAAAAAACAAGTTTTGGTCTTTAAATT
454 ATAGTTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
* * * *
10190009 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* *
10190073 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGC
65 CTTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATT-CTTTCGAGC
* *
10190137 AAATTTCT-AAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATT-TTG
129 -AATTTCTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTC-TTCTTG
* * *
10190200 TAAATAAGTTTTGGACTCTT-AATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC
192 TAAACAAGTTTTGGAC-CTTGAATTAAA-AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTC
10190264 TTGGACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTG
255 TTGGACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTG
* * ***
10190329 GACGAACATCCGAACTTGTCAAACTTTTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGTATTC
320 GACGAACATCCAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTC
* * * *
10190394 AAGATG-ATCCATT-CTTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAAT-CGCATAATTT
385 AAGA-GAATCCATTCCTTCT-AGAAATTTTTCGAACATTCCATGCTCGGAAAATGC-CATAATTT
** *** *
10190456 GGTCTAAATAGTTTGTTTTTTTGTAAACAAGTTTTGATCCTTGAATT
447 GGTCTAAATAGTTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
* *
10190503 AATAACTTTTTTACGTG-GCAATTTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
1 AAAAACTTATTTACGTGAG-AA-TTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
10190567 A
64 A
10190568 GACTTATTTA
Statistics
Matches: 485, Mismatches: 61, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
493 146 0.30
494 303 0.62
495 36 0.07
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (493 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
TTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAA
TTTCTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCTTCTTGTAAA
CAAGTTTTGGACCTTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
TAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAA
CATCCAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTCAAGAGA
ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATGCCATAATTTGGTCTAAAT
AGTTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
Found at i:10190634 original size:278 final size:275
Alignment explanation
Indices: 10190007--10190843 Score: 905
Period size: 278 Copynumber: 3.0 Consensus size: 275
10189997 GGTCTTTAAA
* * * * * * * * * *
10190007 TTAAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTA
1 TTAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * * *
10190071 AACTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG
66 AACTTTTACGATTTCTTTTATAACTTCGGTT-CTTAAAGTATTCAAGATGATCCATTCTTTTGAG
* * * *
10190136 CAAATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
130 CAATTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
10190201 AAATAAGTTTTGGA-CTCTTAATTAAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTC
195 AAACAAGTTTT-GATC-CTTAATT-AATAACTTATTTACGTG-GCAATTG-TTCTCTCTTGGTTC
* * *
10190264 TTGGACTAACATCCGAACTTG
255 TTGGACGAACTTTCGAACTTG
* * * * * * *
10190285 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCA
1 TTAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
10190350 AACTTTTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAG
66 AACTTTTACGATTTCTTTTATAACTTCGGTTCTT-AAAGTATTCAAGATGATCCATTCTTTTGAG
* * * **
10190415 CAATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTTTTTTTGT
130 CAATTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
10190480 AAACAAGTTTTGATCCTTGAATTAATAACTTTTTTACGTGGCAATTTGTTCTCTCTTGGTTCTTG
195 AAACAAGTTTTGATCCTT-AATTAATAACTTATTTACGTGGCAA-TTGTTCTCTCTTGGTTCTTG
10190545 GACGAACTTTCGAACTTG
258 GACGAACTTTCGAACTTG
* * * *
10190563 TTAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
1 TTAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* ** * * * *
10190628 AACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAGTATTTAAGTTAATCCATTCCTTCT-AG
66 AACTTTTACGATTTCTTTTATAACTTCGGTTCTTAAAGTATTCAAGATGATCCATT-CTTTTGAG
* * * * * * * *
10190692 AAATTTTTTGAGA-AATCCACGCTCGAAAAATCCCATCATTTTGTCTCAATAGTTTGCCATTTTG
130 CAATTTTTTGA-ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
10190756 TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGT-ACAAATTGTATCTC-CTTGGTTGT
194 TAAACAAGTTTTGATCCTT-AATTAATAACTTATTTACGTGGC-AATTGT-TCTCTCTTGGTTCT
* *
10190819 TGGATGAACTTTCGAATTTG
256 TGGACGAACTTTCGAACTTG
10190839 TTAAA
1 TTAAA
10190844 CTTTCACAAG
Statistics
Matches: 474, Mismatches: 75, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
276 36 0.08
277 113 0.24
278 173 0.36
279 152 0.32
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (275 bp):
TTAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
AACTTTTACGATTTCTTTTATAACTTCGGTTCTTAAAGTATTCAAGATGATCCATTCTTTTGAGC
AATTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
AACAAGTTTTGATCCTTAATTAATAACTTATTTACGTGGCAATTGTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTG
Found at i:10190970 original size:215 final size:214
Alignment explanation
Indices: 10190594--10191059 Score: 523
Period size: 215 Copynumber: 2.2 Consensus size: 214
10190584 TACTGTTTCA
* * *
10190594 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTT
1 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTCAGTT
* ** ** *
10190659 CCAAAAGTATTTAAGTTAATCCATTCCTTCTAGAAATTTTTTGAGAAATCCACGCTCGAAAAATC
66 CCAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA-TTTTCCAGAAATCCACACTCGAAAAATC
* * ** *
10190724 CCATCATTTTGTCTCAATAGTTTGCCATTTTGTAAACAAGTTTTGGTCT-TTAAATTAAAAACTT
130 ACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTT-AATTAAAAACTT
*
10190788 ATTTACGT-ACAAATTGTATCT
194 AGTTACGTGA-AAATTGTATCT
* * *
10190809 C-CTTGGTTGTTGGATGAACTTTCGAATTTGTTAAACTTTCACAAGTTCTTTTATAACTT-AGGT
1 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTCA-GT
* * * * *
10190872 TCCTTACAGTATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCA-AACATTCCATACTCGAG
65 TCC-AAAAGTATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAGAA-A-TCCACACTCGAA
* *
10190934 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATA
125 AAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAA
* *
10190999 ACTTAGTTACGTGAGAATTGTTTCT
190 ACTTAGTTACGTGAAAATTGTATCT
* * * *
10191024 CTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
10191060 ACTTATTTAC
Statistics
Matches: 208, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
213 3 0.01
214 63 0.30
215 109 0.52
216 33 0.16
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.39
Consensus pattern (214 bp):
CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTCAGTT
CCAAAAGTATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAGAAATCCACACTCGAAAAATCA
CATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAG
TTACGTGAAAATTGTATCT
Found at i:10191149 original size:62 final size:62
Alignment explanation
Indices: 10190998--10191244 Score: 399
Period size: 62 Copynumber: 4.0 Consensus size: 62
10190988 GTTAATTAAT
*
10190998 AACTTAGTTACGTGAGAATTGTTTCTCTCTTA-GTTCTTGGACGAACTTCCAAACTTGTC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10191059 AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10191121 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
10191183 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10191245 CTTTTATGAT
Statistics
Matches: 177, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
60 2 0.01
61 55 0.31
62 120 0.68
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10191501 original size:62 final size:61
Alignment explanation
Indices: 10191396--10191584 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
10191386 TCCCTGAGTT
* * ** *
10191396 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * *
10191458 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * * *
10191520 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10191582 AAA
1 AAA
10191585 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 3 0.03
62 105 0.95
63 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10191677 original size:340 final size:340
Alignment explanation
Indices: 10191057--10192542 Score: 2120
Period size: 340 Copynumber: 4.4 Consensus size: 340
10191047 CAAACTTGTC
* * * *
10191057 AAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * * *
10191122 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
66 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAAT
* * * * * * *
10191187 TATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTAT
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* * * * *
10191252 GATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTT
196 GATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTC
* * * *
10191317 GAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTCTTTTTGTAAACAAGTT
261 GAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
10191382 TTGGTCCCTGAGTTA
326 TTGGTCCTTGAATTA
* * * *
10191397 AAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * *
10191462 ACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTCAAAAAAT
66 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAAT
10191527 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
10191592 GATTT-TTTATATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
196 GATTTCTTT-TATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
10191656 CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAAATAGTTTGTCATTTTGTAAACAAG
260 CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCT-AAATAGTTTGTCATTTTGTAAACAAG
10191721 TTTTGGTCCTTGAATTAA
324 TTTTGGTCCTTGAATT-A
* *
10191739 AAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * * *
10191804 ACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAAAT
66 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAAT
* *
10191869 TATTTACGTAAGAATT-TTTCTCTCTTAGTTCTTGGACGAACATCCGATCTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* * * * * *
10191933 GATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTTTTT
196 GATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTC
* * * * *
10191998 GAGCAATCCATGCTCGAGAAATCGCATAATTTTG-TCTAAACAGTTTGTCTTTTTGTAAACAAGT
261 GAACATTCCATGCTCGGGAAATCGCATAA-TTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10192062 TTCGGTCCTTGAATTA
325 TTTGGTCCTTGAATTA
* * * *
10192078 AAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * *
10192143 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAACT
66 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAAT
* * *
10192208 TATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* * * * *
10192273 GATTTCTTTTATAACTTCGATTCCA-AAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAATTTT
196 GATTTCTTTTATAACTTCGGTT-CATGAAAGTATTCAAGATGATCCATT-CTTTCGAGAAATTTT
* * ** * * *
10192336 TCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACCAG
259 TCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAG
* *
10192400 TTTTGGTCTTTCAATTA
324 TTTTGGTCCTTGAATTA
**
10192417 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * * * *
10192482 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
66 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10192543 CTTTTATGAT
Statistics
Matches: 1027, Mismatches: 110, Indels: 19
0.89 0.10 0.02
Matches are distributed among these distances:
338 4 0.00
339 291 0.28
340 418 0.41
341 169 0.16
342 145 0.14
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (340 bp):
AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAAT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTC
GAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCCTTGAATTA
Found at i:10191835 original size:62 final size:62
Alignment explanation
Indices: 10191738--10191925 Score: 234
Period size: 62 Copynumber: 3.0 Consensus size: 62
10191728 CCTTGAATTA
* * * *
10191738 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10191800 AAAAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
10191862 AAAAAATTATTTACGTAAGAATT-TTTCTCTCTTAGTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10191923 AAA
1 AAA
10191926 CTTTTACGAT
Statistics
Matches: 106, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
61 34 0.32
62 72 0.68
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10192265 original size:62 final size:62
Alignment explanation
Indices: 10192077--10192265 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10192067 TCCTTGAATT
* * * *
10192077 AAAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
10192139 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * * *
10192201 AAAAACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10192263 AAA
1 AAA
10192266 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10192518 original size:62 final size:62
Alignment explanation
Indices: 10192416--10192542 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10192406 TCTTTCAATT
* * * *
10192416 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
* **
10192478 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
10192540 AAA
1 AAA
10192543 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
Found at i:10192776 original size:278 final size:277
Alignment explanation
Indices: 10192139--10193588 Score: 2255
Period size: 278 Copynumber: 5.2 Consensus size: 277
10192129 CAAACTTGTC
* * * * *
10192139 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10192204 AACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** * * *
10192269 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAAT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAAT
* * * ** * *
10192333 TTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAAC
195 TTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTTTGTAAAC
* * *
10192397 CAGTTTTGGTCTTTCAATT
259 AAGTTTTGGTCCTTGAATT
*
10192416 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10192481 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10192546 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
10192611 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTTTGTAAACA
10192676 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10192694 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10192759 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10192824 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
*
10192889 TTTCAAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTT-TTGTAAACA
10192954 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10192972 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10193037 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10193102 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
*
10193167 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAAAA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTT-TTGTAAACA
10193232 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
* *
10193250 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10193315 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * * ** * *
10193380 TTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAA
131 TTATGATTTCTTATATAAC-TTCGGTTCCTGAAAGTATTCAAGATG-ATCCATTCTTTCTAGCAA
* * * * ***
10193444 TTTTTCGAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
194 TTTTTCGAACATTTCATGCTCGGGAAAT-CACATAATTTGATCTAAATAGTTTGTC-TTTTGTAA
* *
10193508 ACAAGTTTTGGTCTTTAAATT
257 ACAAGTTTTGGTCCTTGAATT
* * * * *
10193529 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10193589 TAAACTTTCA
Statistics
Matches: 1101, Mismatches: 64, Indels: 15
0.93 0.05 0.01
Matches are distributed among these distances:
276 1 0.00
277 201 0.18
278 766 0.70
279 130 0.12
280 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTGTAAACAA
GTTTTGGTCCTTGAATT
Found at i:10192796 original size:62 final size:62
Alignment explanation
Indices: 10192694--10192820 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10192684 TCCTTGAATT
* * * *
10192694 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10192756 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10192818 AAA
1 AAA
10192821 CTTTTATGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10193047 original size:62 final size:62
Alignment explanation
Indices: 10192972--10193098 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10192962 TCCTTGAATT
* * * * *
10192972 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
* *
10193034 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
10193096 AAA
1 AAA
10193099 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
Found at i:10193333 original size:62 final size:62
Alignment explanation
Indices: 10193250--10193376 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10193240 TCCTTGAATT
* * * * * *
10193250 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10193312 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10193374 AAA
1 AAA
10193377 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10193695 original size:215 final size:216
Alignment explanation
Indices: 10193312--10193808 Score: 630
Period size: 216 Copynumber: 2.3 Consensus size: 216
10193302 CGAACTTGTC
* * * *
10193312 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10193377 CTTTTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
65 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
* * *
10193442 AATTTTTCGAACATTCCATGCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAA
130 AATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAA
*
10193507 AACAAGTTTTGGTCT-TTAAATT
195 AACAAGTTTTGGACTCTT-AATT
* * * * *
10193529 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-GGTTCTTGGACGAACTTTCGAACTTGTCAAA
**
10193593 CTTTCACGAGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTT-TGA
65 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCT-A
*
10193655 GAAAATTTCT-AAACATTCCATGCTCGGGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
128 G-AAATTTCTCAAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10193718 TGTAAATAAGTTTTGGACTCTTAATT
191 AAAAAACAAGTTTTGGACTCTTAATT
* *
10193744 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10193809 GACTTATTTA
Statistics
Matches: 240, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
214 2 0.01
215 103 0.43
216 106 0.44
217 29 0.12
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTTGGACTCTTAATT
Found at i:10193943 original size:61 final size:62
Alignment explanation
Indices: 10193748--10193990 Score: 337
Period size: 62 Copynumber: 4.0 Consensus size: 62
10193738 TTAATTAAAT
* * * *
10193748 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10193809 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10193871 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC-TACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10193932 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10193991 CAACTTTTAC
Statistics
Matches: 158, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
61 78 0.49
62 80 0.51
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10193970 original size:123 final size:122
Alignment explanation
Indices: 10193748--10193990 Score: 335
Period size: 123 Copynumber: 2.0 Consensus size: 122
10193738 TTAATTAAAT
* * * *
10193748 AACTTAGTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGATGAACTTTCGAACTTGTCAAAGACT
1 AACTTAGTTACGTGAGAATTATTTCTCTCTGGTTCTTGGAT-AACATCCGAACTTGTCAAAAACT
* * * *
10193813 TATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
65 TATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCAAACTTGTCAAA
*
10193871 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACT-ACATCCGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTATTTCTCTC-TGGTTCTTGGA-TAACATCCGAACTTGTCAAAAAC
* * * *
10193935 TTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
64 TTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCAAACTTGTC
10193991 CAACTTTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
123 93 0.89
124 11 0.10
125 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (122 bp):
AACTTAGTTACGTGAGAATTATTTCTCTCTGGTTCTTGGATAACATCCGAACTTGTCAAAAACTT
ATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10194489 original size:62 final size:60
Alignment explanation
Indices: 10194414--10194571 Score: 176
Period size: 62 Copynumber: 2.6 Consensus size: 60
10194404 AATTGGTTCT
* *
10194414 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGAATTATTGACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA-AATTATT-ACATAAGAACTGTTTCA
* * * * *
10194476 CTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCAAAACTTATTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAAAATTATTACATAAGAACTGTTTCA
* * *
10194536 CTC-TGCTTCTTGGATGAACTTCCGAAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCG-AACTTGTCAAA
10194572 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
59 15 0.18
60 27 0.33
61 8 0.10
62 32 0.39
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (60 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTACATAAGAACTGTTTCA
Found at i:10194826 original size:60 final size:59
Alignment explanation
Indices: 10194732--10194915 Score: 244
Period size: 60 Copynumber: 3.0 Consensus size: 59
10194722 TATAACTTAG
*
10194732 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAAACGTTGTCAAAATTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AAAC-TTGTCAAAATTT
*
10194793 TTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCCAAACATGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCAAACTTGTC-AAAA-TT-T
* * * *
10194855 TTACGTGAGGAATTGTTTCTCTCTTGGTTCTGGGACGAACATCCGAACTTGTCAAACTTT
1 TTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATTT
10194915 T
1 T
10194916 ATGATTTCTT
Statistics
Matches: 110, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
59 4 0.04
60 35 0.32
61 20 0.18
62 12 0.11
63 15 0.14
64 24 0.22
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.38
Consensus pattern (59 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATTT
Found at i:10194891 original size:64 final size:63
Alignment explanation
Indices: 10194725--10194894 Score: 249
Period size: 60 Copynumber: 2.7 Consensus size: 63
10194715 TGTTAATTAT
* * *
10194725 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAAACGTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAACGATGTCAA
*
10194788 AA-TT-TTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCCAAAC-ATGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAACGATGTC-AA
*
10194848 AACTTATTTACGTGAGGAATTGTTTCTCTCTTGGTTCTGGGACGAAC
1 AACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10194895 ATCCGAACTT
Statistics
Matches: 97, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
59 4 0.04
60 35 0.36
61 16 0.16
62 11 0.11
63 8 0.08
64 23 0.24
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (63 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAACGATGTCAA
Found at i:10195182 original size:62 final size:61
Alignment explanation
Indices: 10195106--10195477 Score: 426
Period size: 62 Copynumber: 6.0 Consensus size: 61
10195096 GTTAATTAAT
* * * *
10195106 AACTTAGTTACGTGAGAATTGCTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10195168 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGCCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10195230 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCGAACTTGTCAAA
*
10195292 AACTTATTT--GTGCAAGAATTGTTTCTCTCTTCGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTG--AGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** * * * * * * *
10195354 GACTTATTGCCATGAGTACTGTTTCACTATTGGTTCTTGGACAAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10195416 AACTTATTTATGTAAGAATTGTTCCTCTCTTGCTTCTCT-GACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCT-TGGACGAACTTCCGAACTTGTCAAA
10195478 CTTTTACGAT
Statistics
Matches: 264, Mismatches: 38, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
60 3 0.01
61 2 0.01
62 255 0.97
63 2 0.01
64 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10195436 original size:186 final size:186
Alignment explanation
Indices: 10195120--10195477 Score: 520
Period size: 186 Copynumber: 1.9 Consensus size: 186
10195110 TAGTTACGTG
* * *
10195120 AGAATTGCTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGA
1 AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
* * * *
10195185 ATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTGAGAATT
66 ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
* *
10195250 GTTTCTCTCTTGCTTCT-TGGACTAACATCCGAACTTGTCAAAAACTTATTTGTGCA
131 GTTCCTCTCTTGCTTCTCT-GACGAACATCCGAACTTGTCAAAAACTTATTTGTGCA
* * * * * * *
10195306 AGAATTGTTTCTCTCTTCGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTGCCATGAGT
1 AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
** * *
10195371 ACTGTTTCACTATTGGTTCTTGGACAAACTTCTGAACTTGTCAAAAACTTATTTATGTAAGAATT
66 ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
10195436 GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAA
131 GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAA
10195478 CTTTTACGAT
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
186 150 0.99
187 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (186 bp):
AGAATTGCTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTGACATGAGA
ACTGTTTCACTATTGGTTCTTGGACAAACTTCCAAACTTGCCAAAAACTTATTTACGTAAGAATT
GTTCCTCTCTTGCTTCTCTGACGAACATCCGAACTTGTCAAAAACTTATTTGTGCA
Found at i:10195888 original size:62 final size:62
Alignment explanation
Indices: 10195790--10196336 Score: 383
Period size: 62 Copynumber: 9.0 Consensus size: 62
10195780 GAGAAATCAT
* * * *
10195790 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10195852 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10195914 AACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAGCATCCGAACTTGTC--A
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * **** * *
10195974 AAC-T-TTTAC----GATTTCTTT-TATAACTTCGGTTCCAT--A--AAGTTTGTCA-TTTTGAA
1 AACTTATTTACGTGAGAATTGTTTCTCT--CTT-GGTT-CTTGGACGAACTTCCAAACTTGTCAA
10196027 A
62 A
* * * * * * ** *** ** *
10196028 AATCTCATCATTT-GGTCTA-AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTT-TAAA--T
1 AA-CT--T-ATTTACGT-GAGAATTGTTTCTC-TCTTGGT--TCTTG-GACGAACTTCCAAACTT
10196087 -T-AAA
57 GTCAAA
* * *
10196091 AACTTATTTACTTGAGAATTGTATATCTC-CTT-GTTCTTGGACGAACTTTCAAACTTGTAAAA
1 AACTTATTTACGTGAGAATTGT-T-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10196153 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCAAACTTATAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10196214 AACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCATAA-TTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA-AACTTGTCAAA
* *
10196275 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10196337 CTTTTACGAT
Statistics
Matches: 382, Mismatches: 62, Indels: 82
0.73 0.12 0.16
Matches are distributed among these distances:
52 3 0.01
53 5 0.01
54 10 0.03
55 4 0.01
56 4 0.01
57 6 0.02
58 11 0.03
59 6 0.02
60 22 0.06
61 122 0.32
62 172 0.45
63 10 0.03
64 2 0.01
65 2 0.01
66 1 0.00
67 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10196197 original size:61 final size:61
Alignment explanation
Indices: 10196088--10196332 Score: 368
Period size: 61 Copynumber: 4.0 Consensus size: 61
10196078 TCTTTAAATT
* * *
10196088 AAAAACTTATTTACTTGAGAATTGTATATCTC-CTTGTTCTTGGACGAACTTTCAAACTTGTA
1 AAAAACTTATTTACGTGAGAATTGT-T-TCTCTCTGGTTCTTGGACGAACTTCCAAACTTGTA
* *
10196150 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCAAACTTATA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCAAACTTGTA
*
10196211 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCATAA-TTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCA-AACTTGTA
* *
10196272 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTCCAAACTTGT
10196333 CAAACTTTTA
Statistics
Matches: 169, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
60 4 0.02
61 117 0.69
62 48 0.28
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACTTCCAAACTTGTA
Found at i:10196595 original size:62 final size:62
Alignment explanation
Indices: 10196490--10196616 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10196480 TCCTTGAATT
* * * *
10196490 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* * *
10196552 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTTTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10196614 AAA
1 AAA
10196617 CTTTTAGGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10197169 original size:61 final size:61
Alignment explanation
Indices: 10196987--10197232 Score: 314
Period size: 61 Copynumber: 4.0 Consensus size: 61
10196977 TAATTAAAAT
* * * * *
10196987 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10197049 GACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCT-CTC-TGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10197111 AACTTATTTACGTGAGAATTATTTCTCTCTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10197172 AACTTATTCACGTAAGAATTGTTTCTCTCTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10197233 CTTTTACGAT
Statistics
Matches: 160, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
61 86 0.54
62 73 0.46
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10197548 original size:63 final size:63
Alignment explanation
Indices: 10197383--10197572 Score: 274
Period size: 63 Copynumber: 3.0 Consensus size: 63
10197373 TCCTTGAATT
* * ** * *
10197383 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATAAACTTTCAAACTTTTC-
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
10197445 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
10197508 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
10197571 AA
1 AA
10197573 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
62 54 0.47
63 60 0.53
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (63 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
Found at i:10197698 original size:337 final size:339
Alignment explanation
Indices: 10197078--10197846 Score: 1043
Period size: 337 Copynumber: 2.3 Consensus size: 339
10197068 TGTTTTACTC
* * *
10197078 TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTC-TG
1 TTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
*
10197142 GTTCTTGGACTAACATCCGAACTTGTC-AAAAACTTATTCACGTAAGAATTGTTTCTCTCTGGCT
66 GTTCTTGGACGAACATCCGAACTTGTCAAAAAACTTATTCACGTAAGAATTGTTTCTCTCTGGCT
* * ***
10197206 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGT
131 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGATCCAAAAAGT
* * * ** *
10197271 ATTCAAGATGATCCATTCTTTTGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATT
196 ATTCAAGATAATCCATTCTTCTGAGCAAATTTTCAAACATTCCATGCTCGGAAAATCGCATAATT
* * *
10197336 TTGTCTAAACAGTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGA
261 TGGTCTAAACAGTTGTCTATTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTACGTGA
10197401 GAATTGGTTCTCTA
326 GAATTGGTTCTCTA
** * *
10197415 TTGGTTCTTGGATAAACTTTCAAACTTTTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTG
1 TTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
* * * *
10197480 GTTCTTGGACGAACTTTCGAACTTGTCAAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCT
66 GTTCTTGGACGAACATCCGAACTTGTCAAAAAACTTATTCACGTAAGAATTGTTTCTCTCTGGC-
*
10197545 TCTTGGACGAACATTCGAACTTGTCAAACTTTTACGATTT-CTGTTATAACTTC-GATCCAAAAA
130 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCCT-TTATAACTTCGGATCCAAAAA
* *
10197608 GTATTCAAGGTAATCCATTACTTCT-AG-AAATTTTCAAACATTCCATGCTCGGAAAATC-CATC
194 GTATTCAAGATAATCCATT-CTTCTGAGCAAATTTTCAAACATTCCATGCTCGGAAAATCGCATA
* * * *
10197670 GTTTGGTCT-AACTAGTTTGTC-ATTTGTAAACCAGTTTTGGTCTTTCAATTAAAAACTTATTTA
258 ATTTGGTCTAAAC-AG-TTGTCTATTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTA
* *
10197733 TGTGAGAATTGGTTCTCTC
321 CGTGAGAATTGGTTCTCTA
* ** * *
10197752 TTGATTCTTGGACGAACTTTTGAGCTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTG
1 TTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
* * *
10197817 CTTCTTGGATGAACATCCAAACTTGTCAAA
66 GTTCTTGGACGAACATCCGAACTTGTCAAA
10197847 CTTTTATGAT
Statistics
Matches: 376, Mismatches: 49, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
336 3 0.01
337 202 0.54
338 58 0.15
339 61 0.16
340 52 0.14
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
TTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
GTTCTTGGACGAACATCCGAACTTGTCAAAAAACTTATTCACGTAAGAATTGTTTCTCTCTGGCT
CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGATCCAAAAAGT
ATTCAAGATAATCCATTCTTCTGAGCAAATTTTCAAACATTCCATGCTCGGAAAATCGCATAATT
TGGTCTAAACAGTTGTCTATTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTACGTGA
GAATTGGTTCTCTA
Found at i:10197842 original size:62 final size:62
Alignment explanation
Indices: 10197720--10197846 Score: 155
Period size: 62 Copynumber: 2.0 Consensus size: 62
10197710 TCTTTCAATT
** * * *** *
10197720 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAGCTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* * *
10197782 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10197844 AAA
1 AAA
10197847 CTTTTATGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10198117 original size:60 final size:62
Alignment explanation
Indices: 10197998--10198122 Score: 191
Period size: 60 Copynumber: 2.0 Consensus size: 62
10197988 TCCTTGAATT
* * * *
10197998 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
*
10198060 AAAAACTTATTTACGTAAGAATT-G-TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10198120 AAA
1 AAA
10198123 CTTTTAGGAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 35 0.60
61 1 0.02
62 22 0.38
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10198177 original size:276 final size:272
Alignment explanation
Indices: 10197445--10198333 Score: 1210
Period size: 276 Copynumber: 3.2 Consensus size: 272
10197435 CAAACTTTTC
* * *
10197445 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC-AA
* *
10197510 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAATTG-TTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
* * *
10197575 TTTACGATTTCTGTTATAACTTCGA-TCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAAT
129 TTTACGATTTCTTTTATAACTTC-ATTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAGAATT
* * * * *
10197639 TTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATTTGTAAACCAG
192 TTTCGAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAG
*
10197704 TTTTGGTCTTTCAATT
257 TTTTGGTCTTTAAATT
** * *
10197720 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAGCTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10197785 AACTTATTTACATAAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTG-TTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** *
10197850 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
130 TTACGATTTCTTTTATAACTTC-ATTCCAAAAAGTATTCAAGATAATCCATTC-TTCTAG-AATT
* * * * *
10197915 TTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACA
192 TTTCGAACATTCCATGCTCGGAAAATC-CATCATTTGGTCTAAATAGTTTGTC-TTTTGTAAACA
* *
10197980 AGTTTTGGTCCTTGAATT
255 AGTTTTGGTCTTTAAATT
*
10197998 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10198063 AACTTATTTACGTAAGAATTG-TCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTT
66 AACTTATTTACGTAAGAATTGTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTTT
*
10198127 TAGGATTTCTTTTATAACTTCATTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
131 TACGATTTCTTTTATAACTTCA-TTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAG-AATTT
* ***
10198192 TTCGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAACAA
193 TTCGAACATTCCATGCTCGGAAAAT-CCATCATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAA
10198257 GTTTTGGTCTTTAAATT
256 GTTTTGGTCTTTAAATT
* * * *
10198274 AAAAAGTTATTTACATGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACATGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10198334 TAAACTTTCA
Statistics
Matches: 543, Mismatches: 62, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
274 85 0.16
275 113 0.21
276 215 0.40
277 23 0.04
278 107 0.20
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (272 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTCATTCCAAAAAGTATTCAAGATAATCCATTCTTCTAGAATTTTTC
GAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTT
GGTCTTTAAATT
Found at i:10198439 original size:214 final size:214
Alignment explanation
Indices: 10198060--10198552 Score: 586
Period size: 214 Copynumber: 2.3 Consensus size: 214
10198050 CGAACTTGTC
* * * * * *
10198060 AAAAACTTATTTACGTAAGAATTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
* * * * * *
10198125 TTTAGGATTTCTTTTATAACTTCATTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
66 TTCACGAGTTCTTTTATAACCTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAAT
* * *
10198190 TTTTCGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
131 TTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAAAC
*
10198255 AAGTTTTGGTCT-TTAAATT
196 AAGTTTTGGACTCTT-AATT
* * * *
10198274 AAAAAGTTATTTACATGAGAATTGTATCTCCTAGGTTCTCGGACGAACTTTCGAACTTGTTAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCT-GGTTCTTGGACGAACTTTCGAACTTGTCAAAC
** *
10198339 TTTCACGAGTT-TTTTATAACCT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
65 TTTCACGAGTTCTTTTATAACCTCA-GTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
10198401 AAATTTCT-AAACATTCCATGCTC-GAGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTTT
127 AAATTTCTCAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTTA
** *
10198463 GTAAATAAGTTTTGGACTCTTAATT
190 AAAAACAAGTTTTGGACTCTTAATT
* * *
10198488 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAA-AACTTATTTACGTGAGAATTGTATCTC-CTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10198553 GACTTATTTA
Statistics
Matches: 236, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
213 5 0.02
214 134 0.57
215 95 0.40
216 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACCTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAAT
TTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAAAC
AAGTTTTGGACTCTTAATT
Found at i:10198593 original size:62 final size:62
Alignment explanation
Indices: 10198492--10198738 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10198482 TTAATTAAAT
* * * *
10198492 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10198553 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10198615 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10198677 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10198739 CTTTTACGAT
Statistics
Matches: 162, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
61 23 0.14
62 139 0.86
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10198842 original size:892 final size:890
Alignment explanation
Indices: 10197720--10199907 Score: 3311
Period size: 892 Copynumber: 2.5 Consensus size: 890
10197710 TCTTTCAATT
* * ** *
10197720 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAGCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10197785 AACTTATTTACATAAGAATTGTTTCTCTCTT-GCTTCTTGGATGAACATCCAAACTTGTCAAACT
65 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGC-TCTTGGACGAACATCCGAACTTGTCAAACT
* *
10197849 TTTATGATTT-CTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCT-AGCA
129 TTTACGATTTCCTT-TATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTT-TGAGCA
* * *
10197912 ATTTTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAA
192 ATTTTTCGAGCATTCCATGCTCGAGAAATCGCATAATTTG-TCTAAATAGTTTGTCTTTTTGTAA
* *
10197977 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
256 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10198042 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTCTCTCTTGGTTCTTGGACGAAC
321 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTCTCTCTTGGTTCTTGGACGAAC
* * * * *
10198107 ATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCATTTCCAAAAAGTATTCAAGATAA
386 TTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCC-AAAAGTATTCAAGATAA
*
10198172 TCCATTCCTTCTAGAAATTTTTCG-AACATTCCATGCTC-AGAAAATGCCATCATTTGGTCTAAA
450 TCCATTCCTTCTAGAAATTTTTCGAAACA-TCCATGCTCGA-AAAATCCCATCATTTGGTCTAAA
* *
10198235 TAGTTTGTCATTTAAAAAACAAGTTTTGGTCTTTAAATTAAAAAGTTATTTACATGA-GAATTGT
513 TAGTTTGTCATTTAAAAAACAAGTTTTGCTCTTTAAATTAAAAACTTATTTACAT-ACGAATTGT
*
10198299 ATCTCCTAGGTTCTCGGACGAACTTTCGAACTT-GTTAAACTTTCACGAGTT-TTTTATAACCTA
577 ATCTCCTAGGTTCTCGGACGAACTTTCGAA-TTCGTTAAACTTTCACAAGTTCTTTTATAACCTA
* * *
10198362 GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCTAAACATTCCATGCTCGAG
641 GGTTCCTTAAAGTATTCAAGACGATCAACTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAG
*
10198427 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAAGTTTTGGACTCTTAATTAAAT
706 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATT-AAT
* * * * *
10198492 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACTTTCGAACTTGTCAAAGAC
770 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10198556 TTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
835 TTATTTACATGAGAACTATTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10198612 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
10198677 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTTTCAAACTT
65 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* *
10198742 TTACGATTTCCTTTATAGCTTCGGTTCTTGTAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
130 TTACGATTTCCTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
* * * *
10198807 TTTTGAACATTCCATGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTTTTTTTGTAAACA
195 TTTCGAGCATTCCATGCTCGAGAAATCGCATAATTT-GTCTAAATAGTTTGTCTTTTTGTAAACA
* * *
10198872 AGTTTCGATCCTTGAATTAATAACTT-TTTACGTG-GCAATTTGTTCTCTCTTGGTTCTTGGACG
259 AGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACG
* * * * *
10198935 AACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAAC
323 AACTTTCGAACTTGTCAAAAACTTATTTACATGAG-AAT-TGTCTCTCTTGGTTCTTGGACGAAC
* * * *
10199000 TTTCGAACTTGTCAAACTTTTACGATTTCTTTTATTACTTCGGTTCCAAAAGTATTTAAGTTAAT
386 TTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAGTATTCAAGATAAT
* * *
10199065 CCATTCCTTCTAGAAATTTTTTGAAACATCCATGCTCGAAAAATCCCATCATTTTGTCTCAATAG
451 CCATTCCTTCTAGAAATTTTTCGAAACATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAG
*** * *
10199130 TTTGTCATTTTGTAAACAAGTTTTGCTCTTTAAATTAAAAACTTATTTACGTACTAATTGTATCT
516 TTTGTCATTTAAAAAACAAGTTTTGCTCTTTAAATTAAAAACTTATTTACATACGAATTGTATCT
* * * * *
10199195 CCTTGGTTGTTGGATGAACTTTCGAATTCGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTC
581 CCTAGGTTCTCGGACGAACTTTCGAATTCGTTAAACTTTCACAAGTTCTTTTATAACCTAGGTTC
*
10199260 CTTACAGTATTCAAGACGATCAACTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATC
646 CTTAAAGTATTCAAGACGATCAACTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATC
*
10199325 ACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTA
711 ACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAATAACTTA
10199390 GTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
776 GTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
* * *
10199455 ACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
841 ACATGAGAACTATTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10199505 AAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
* * *
10199569 ACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAACTTT
66 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * *
10199634 TACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTT
131 TACGATTTCCTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTT
* *
10199699 TTCGAGCAATCCATGCTCGAGAAATCGCATAATTTTGTCTAAACAGTTTGTCTTTTTGTAAACAA
196 TTCGAGCATTCCATGCTCGAGAAATCGCATAA-TTTGTCTAAATAGTTTGTCTTTTTGTAAACAA
* *
10199764 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAA
260 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
* *
10199829 CTTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTCCTCTCTTGGTTCTTGGACGAACTT
325 CTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTG-T-CTCTCTTGGTTCTTGGACGAACTT
10199894 TCGAACTTGTCAAA
388 TCGAACTTGTCAAA
10199908 AACTTATTTA
Statistics
Matches: 1169, Mismatches: 109, Indels: 36
0.89 0.08 0.03
Matches are distributed among these distances:
890 2 0.00
891 305 0.26
892 553 0.47
893 309 0.26
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (890 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
ACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCCTTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTT
TTCGAGCATTCCATGCTCGAGAAATCGCATAATTTGTCTAAATAGTTTGTCTTTTTGTAAACAAG
TTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC
TTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTCTCTCTTGGTTCTTGGACGAACTTTCG
AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAGTATTCAAGATAATCCATT
CCTTCTAGAAATTTTTCGAAACATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGT
CATTTAAAAAACAAGTTTTGCTCTTTAAATTAAAAACTTATTTACATACGAATTGTATCTCCTAG
GTTCTCGGACGAACTTTCGAATTCGTTAAACTTTCACAAGTTCTTTTATAACCTAGGTTCCTTAA
AGTATTCAAGACGATCAACTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATC
ATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAATAACTTAGTTAC
GTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATG
AGAACTATTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10199217 original size:276 final size:277
Alignment explanation
Indices: 10198612--10199220 Score: 730
Period size: 277 Copynumber: 2.2 Consensus size: 277
10198602 CAAACTTGTC
* * * *
10198612 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGACAATT-GTTCTCTCTTGGTTCTTGGA-TGAACTTTCGAACTTGTCAA
* * * *
10198676 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTTTCAAACT
64 AAACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
*** * * *
10198741 TTTACGATTTCCTTTATAGCTTCGGTTCTTGTAAGTATTCAAGATGATCCATTCTTTTGAGCAAT
129 TTTACGATTTCCTTTATAGCTTCGGTTCTCAAAAGTATTCAAGATAATCCATTCTTCTGAGAAAT
* ** **
10198806 TTTTTGAACATTCCATGCTCGAGAAATCGTATAATTTGGTCTAAATAGTTTGTTTTTTTGTAAAC
194 TTTTTGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10198871 AAGTTTCGATCCTTGAATT
259 AAGTTTCGATCCTTAAATT
* * *
10198890 AATAACTT-TTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGACAA-TTGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * * * *
10198954 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTT
65 AACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10199019 TTACGATTTCTTTTATTA-CTTCGGTTC-CAAAAGTATTTAAGTTAATCCATTCCTTCT-AGAAA
130 TTACGATTTCCTTTA-TAGCTTCGGTTCTCAAAAGTATTCAAGATAATCCATT-CTTCTGAGAAA
* * *
10199081 TTTTTTGAAACA-TCCATGCTCGAAAAATCCCATCATTTTGTCTCAATAGTTTGTCATTTTGTAA
193 TTTTTTG-AACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
10199145 ACAAGTTTTGCTCTTTAAATT
257 ACAAGTTTCGATCCTTAAATT
*
10199166 AAAAACTTATTTACGT-ACTAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAA
1 AAAAACTTATTTACGTGAC-AATTGT-TCTCTCTTGGTTCTTGGATGAACTTTCGAA
10199221 TTCGTTAAAC
Statistics
Matches: 280, Mismatches: 43, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
276 125 0.45
277 144 0.51
278 11 0.04
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (277 bp):
AAAAACTTATTTACGTGACAATTGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAA
ACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCCTTTATAGCTTCGGTTCTCAAAAGTATTCAAGATAATCCATTCTTCTGAGAAATTT
TTTGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTCGATCCTTAAATT
Found at i:10199482 original size:62 final size:62
Alignment explanation
Indices: 10199384--10199629 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10199374 GTTAATTAAT
* * *
10199384 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10199446 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10199508 AACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10199568 AACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10199630 CTTTTACGAT
Statistics
Matches: 173, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
60 56 0.32
61 4 0.02
62 113 0.65
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10199599 original size:122 final size:124
Alignment explanation
Indices: 10199384--10199629 Score: 424
Period size: 122 Copynumber: 2.0 Consensus size: 124
10199374 GTTAATTAAT
10199384 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10199449 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10199508 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10199571 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAA
66 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10199630 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
122 94 0.81
123 2 0.02
124 20 0.17
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10199965 original size:62 final size:62
Alignment explanation
Indices: 10199781--10199969 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
10199771 TCCTTGAATT
* * * *
10199781 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
10199843 AAAAACTTATTTACATGAGTATTGTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10199905 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10199967 AAA
1 AAA
10199970 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10200191 original size:338 final size:339
Alignment explanation
Indices: 10199443--10200245 Score: 1168
Period size: 338 Copynumber: 2.4 Consensus size: 339
10199433 CAAACTTGTC
** *
10199443 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
*
10199508 AACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
66 AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* *
10199572 TATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGAGGAACATCCGAACTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* *** * *
10199637 GATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
196 GATTTCTTTTATAACTTCGATTCCAAAAAGCATTCAAGATAATCCATTCTTTCGAGCAAATTTTC
* * * *
10199702 GAGCAATCCATGCTCGAGAAATCGCATAATTTTGTCTAAACAGTTTGTCTTTTTGTAAACAAGTT
261 AAACAATCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGTCATTTTGTAAACAAGTT
*
10199767 TCGGTCCTTGAATT
326 TCGGTCCTTCAATT
* *
10199781 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * *
10199846 AACTTATTTACATGAGTATTGTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* *
10199911 TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * *
10199976 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAG-AAATTT
195 CGATTTCTTTTATAACTTCGATTCCAAAAAGCATTCAAGATAATCCATT-CTTTCGAGCAAATTT
* ** *
10200039 TCAAACATTCCATGCTCG-GAAAATC-CATCGTTTGGTCT-AACTAGTTTGTCATTTTGTAAACC
259 TCAAACAATCCATGCTCGAG-AAATCGCATAATTTGGTCTAAAC-AGTTTGTCATTTTGTAAACA
* *
10200101 AGTTTTGGTCTTTCAATT
322 AGTTTCGGTCCTTCAATT
* * *
10200119 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * *
10200184 AACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
66 AACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10200246 CTTTTATGAT
Statistics
Matches: 416, Mismatches: 43, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
337 3 0.01
338 239 0.57
339 27 0.06
340 146 0.35
341 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGATTCCAAAAAGCATTCAAGATAATCCATTCTTTCGAGCAAATTTTC
AAACAATCCATGCTCGAGAAATCGCATAATTTGGTCTAAACAGTTTGTCATTTTGTAAACAAGTT
TCGGTCCTTCAATT
Found at i:10200221 original size:62 final size:62
Alignment explanation
Indices: 10200119--10200245 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10200109 TCTTTCAATT
* * * *
10200119 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
* * *
10200181 AAAAACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
10200243 AAA
1 AAA
10200246 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
Found at i:10200475 original size:278 final size:278
Alignment explanation
Indices: 10199843--10201290 Score: 2173
Period size: 278 Copynumber: 5.2 Consensus size: 278
10199833 CAAACTTGTC
* * *
10199843 AAAAACTTATTTACATGAGTATT-GTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTT-CTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAA
* * *
10199907 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * ** * *
10199972 TTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAG-AA
130 TTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAA
* * * ** * *
10200035 ATTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAA
194 TTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAA
* * *
10200099 CCAGTTTTGGTCTTTCAATT
259 CAAGTTTTGGTCCTTGAATT
*
10200119 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10200184 AACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10200249 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * * *
10200314 TTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTAGTCGTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
10200379 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
10200397 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10200462 AACTTATTTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
10200527 TTATGATTTCTTATATAACTTCAGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * *
10200592 TTTCAAACATTCCATGCTCAGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
10200657 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
* *
10200675 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAGCTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10200740 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10200805 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGC-ATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10200869 TTTCGAACATTTCATGCTCGGGAGATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10200933 AAGTTTTGGTCCTTGAATT
260 AAGTTTTGGTCCTTGAATT
*
10200952 AAAAAC-TATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10201016 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** * *
10201081 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAAT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG-ATCCATTCTTTCTAGCAAT
* * ***
10201145 TTTTCGAACATTCCATGCTGCTCGGAAAATGC-CATCATTTG-TCTAAATAGTTTGTCATTTAAA
195 TTTTCGAACATTCCA---TGCTCGGGAAAT-CACATAATTTGATCTAAATAGTTTGTCATTTTGT
* *
10201208 AAACAAGTTTTGGTCTTTAAATT
256 AAACAAGTTTTGGTCCTTGAATT
* * * * *
10201231 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10201291 TAAACTTTCA
Statistics
Matches: 1080, Mismatches: 78, Indels: 25
0.91 0.07 0.02
Matches are distributed among these distances:
275 2 0.00
276 342 0.32
277 130 0.12
278 496 0.46
279 69 0.06
280 40 0.04
281 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGTCCTTGAATT
Found at i:10200499 original size:62 final size:62
Alignment explanation
Indices: 10200397--10200523 Score: 193
Period size: 62 Copynumber: 2.0 Consensus size: 62
10200387 TCCTTGAATT
* * * *
10200397 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
*
10200459 AAAAACTTATTTACGTAAGAATT-GTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGT-TCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10200521 AAA
1 AAA
10200524 CTTTTATGAT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 2 0.03
62 57 0.97
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10200795 original size:62 final size:62
Alignment explanation
Indices: 10200675--10200801 Score: 166
Period size: 62 Copynumber: 2.0 Consensus size: 62
10200665 TCCTTGAATT
* * ** * *
10200675 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAGCTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAATTCCAAACTTGTC
* *
10200737 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-CAAATATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAAT-TCCAAACTTGTC
10200799 AAA
1 AAA
10200802 CTTTTATGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
61 2 0.04
62 54 0.96
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGATCAAATTCCAAACTTGTC
Found at i:10201026 original size:62 final size:61
Alignment explanation
Indices: 10200952--10201077 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 61
10200942 TCCTTGAATT
* * * * *
10200952 AAAAACTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTC
1 AAAAACTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10201013 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAAC-TATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10201075 AAA
1 AAA
10201078 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 6 0.11
62 51 0.89
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (61 bp):
AAAAACTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10201027 original size:554 final size:552
Alignment explanation
Indices: 10199843--10201290 Score: 2291
Period size: 554 Copynumber: 2.6 Consensus size: 552
10199833 CAAACTTGTC
* * *
10199843 AAAAACTTATTTACATGAGTATT-GTTCCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTT-CTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAA
* * *
10199907 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
* *
10199972 TTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAAT
130 TTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAGAATT
* * *
10200037 TTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACCA
194 TTTCAAACATTCCATGCTCGGAAAATCCATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAA
* *
10200102 GTTTTGGTCTTTCAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAA
258 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAA
* *
10200167 CTTTCGAACTTGTCAAAAACTTATTTACGTAAGCATTGTTTCTCTCTTGGTTCTTGGACGAACAT
323 CTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACAT
*
10200232 CCGAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATC
388 CCAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATC
*
10200297 CATTCTTTCTAGCAATTTTTCGAGCATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGT
453 CATTCTTTCTAGCAATTTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGT
10200362 TAGTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
518 TAGTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
10200397 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10200462 AACTTATTTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * **
10200527 TTATGATTTCTTATATAACTTC-AGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
131 TTACGATTTCTTTTATAACTTCGA-TTCCAAAAAGTATTCAAGATAATCCATTC-TTCTAG-AAT
* *
10200591 TTTTCAAACATTCCATGCTCAGG-AAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAA
193 TTTTCAAACATTCCATGCTC-GGAAAATC-CATCATTTG-TCTAAATAGTTTGTCATTTTGTAAA
* * *
10200655 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAT
255 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
*
10200720 GAGCTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAA
320 GAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAA
*
10200785 TATCCAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG
385 CATCCAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG
*
10200850 ATCCATTCTTTCTAGC-ATTTTTCGAACATTTCATGCTCGGGAGATCACATAATTTGATCTAAAT
450 ATCCATTCTTTCTAGCAATTTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAAT
*
10200914 AGTTTGTC-TTCTTGTAAACAAGTTTTGGTCCTTGAATT
515 AGTTAGTCGTT-TTGTAAACAAGTTTTGGTCCTTGAATT
*
10200952 AAAAAC-TATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10201016 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * *
10201081 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATT-CTTCTAG-AATT
* ***
10201146 TTTCGAACATTCCATGCTGCTCGGAAAATGCCATCATTTGTCTAAATAGTTTGTCATTTAAAAAA
194 TTTCAAACATTCCA---TGCTCGGAAAAT-CCATCATTTGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
10201211 CAAGTTTTGGTCTTTAAATTAAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGA
255 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGA
*
10201274 CGAACTTTTGAACTTGT
319 CGAACTTTCGAACTTGT
10201291 TAAACTTTCA
Statistics
Matches: 824, Mismatches: 54, Indels: 31
0.91 0.06 0.03
Matches are distributed among these distances:
553 2 0.00
554 361 0.44
555 144 0.17
556 299 0.36
557 17 0.02
558 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (552 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCTTCTAGAATTTT
TCAAACATTCCATGCTCGGAAAATCCATCATTTGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTT
TCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCA
AACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCAT
TCTTTCTAGCAATTTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTAG
TCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
Found at i:10201549 original size:62 final size:63
Alignment explanation
Indices: 10201449--10201573 Score: 207
Period size: 62 Copynumber: 2.0 Consensus size: 63
10201439 TTAATTAAAT
* * *
10201449 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCG-AACTTGTCAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAAACTTGTCAAA
*
10201511 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAAACTTGTCAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAAACTTGTCAAA
10201574 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 47 0.81
63 11 0.19
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (63 bp):
AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAAACTTGTCAAA
Found at i:10201772 original size:495 final size:491
Alignment explanation
Indices: 10200737--10201789 Score: 1363
Period size: 493 Copynumber: 2.1 Consensus size: 491
10200727 CGAACTTGTC
* * * * *
10200737 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACT-TTCGAACTTGTTAA
* * * * * * *
10200801 ACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGC
64 ACTTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGC
** * * * *
10200866 ATTTTTCGAACATTTCATGCTCGGGAGATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAA
129 AAATTTCAAACATTTCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCTTCTTGTAA
* *
10200931 ACAAGTTTTGGTCCTTGAATTAAAAACTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
194 ACAAGTTTTGGACCTTGAATTAAAAACTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
* * *
10200996 TAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
259 TAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAA
* * *
10201061 CATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGA
324 CATCCAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTCAAGAGA
*
10201126 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTGCTCGGAAAATGCCATCATTTGTCTAA
389 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCA--CTGCTCGGAAAATGCCATAATTTGTCTAA
* *
10201191 ATAGTTTGTCATTTAAAAAACAAGTTTTGGTCTTTAAATT
452 ATAGTTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
* * * *
10201231 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* *
10201295 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGC
65 CTTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATT-CTTTCGAGC
* *
10201359 AAATTTCTAAACA-TTCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATT-TTGT
129 AAATTTC-AAACATTTCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTC-TTCTTGT
* * *
10201422 AAATAAGTTTTGGACTCTT-AATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
192 AAACAAGTTTTGGAC-CTTGAATTAAA-AAC-TAGTTACGTGAGAATTGGTTCTCTCTTGATTCT
10201486 TGGACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGG
254 TGGACTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGG
* ***
10201551 ACGAACATCCGAAACTTGTCAAACTTTTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGTATTC
319 ACGAACATCC-AAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTC
* * * *
10201616 AAGATG-ATCCATT-CTTTTGAGCAATTTTTTGAACATTCCA-TGCTCGGGAAAT-CGCATAATT
383 AAGA-GAATCCATTCCTTCT-AGAAATTTTTCGAACATTCCACTGCTCGGAAAATGC-CATAATT
** *** *
10201677 TGGTCTAAATAGTTTGTTTTTTTGTAAACAAGTTTTGATCCTTGAATT
445 T-GTCTAAATAGTTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
* *
10201725 AATAACTTTTTTACGTG-GCAATTTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
1 AAAAACTTATTTACGTGAG-AA-TTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
10201789 A
64 A
10201790 GACTTATTTA
Statistics
Matches: 483, Mismatches: 60, Indels: 31
0.84 0.10 0.05
Matches are distributed among these distances:
492 1 0.00
493 160 0.33
494 103 0.21
495 141 0.29
496 77 0.16
497 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (491 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
TTTCACGAGTTCTTATATAACCTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAA
ATTTCAAACATTTCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCTTCTTGTAAAC
AAGTTTTGGACCTTGAATTAAAAACTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTA
ACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACA
TCCAAACTTGTCAAACTTTTACGATTTCCTTTATAACTTCGGTTCCAAAAAGTATTCAAGAGAAT
CCATTCCTTCTAGAAATTTTTCGAACATTCCACTGCTCGGAAAATGCCATAATTTGTCTAAATAG
TTTGTCATTTAAAAAACAAGTTTTGATCCTTAAATT
Found at i:10201784 original size:279 final size:275
Alignment explanation
Indices: 10201231--10202060 Score: 904
Period size: 279 Copynumber: 3.0 Consensus size: 275
10201221 TCTTTAAATT
* * * * * *
10201231 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
10201295 CTTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTT-CTTAAAGTATTCAAGATGATCCATTCTTTTGAGCA
* * * *
10201360 AATTTCTAAACATT-CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
130 ATTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10201424 ATAAGTTTTGGA-CTCTTAATTAAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTT
195 ACAAGTTTT-GATC-CTTAATT-AATAACTTATTTACGTG-GCAATTG-TTCTCTCTTGGTTCTT
* * *
10201487 GGACTAACATCCGAACTTGTC
255 GGACGAACTTTCGAACTTGTC
* * * *
10201508 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG-AACTTGTCAA
* *
10201573 ACTTTTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGC
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCTT-AAAGTATTCAAGATGATCCATTCTTTTGAGC
* * * **
10201638 AATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTTTTTTTGTA
129 AATTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
10201703 AACAAGTTTTGATCCTTGAATTAATAACTTTTTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGG
194 AACAAGTTTTGATCCTT-AATTAATAACTTATTTACGTGGCAA-TTGTTCTCTCTTGGTTCTTGG
*
10201768 ACGAACTTTCGAACTTGTT
257 ACGAACTTTCGAACTTGTC
* * * * * *
10201787 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTC-TGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * * * *
10201851 CTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAGTATTTAAGTTAATCCATTCCTTCT-AGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCTTAAAGTATTCAAGATGATCCATT-CTTTTGAGCA
* * * * * * *
10201915 ATTTTTTGAGA-AATCCACGCTCGAAAAATCCCATCATTTTGTCTCAATAGTTTGCCATTTTGTA
130 ATTTTTTGA-ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
10201979 AACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGT-ACAAATTGTATCTC-CTTGGTTGTTG
194 AACAAGTTTTGATCCTT-AATTAATAACTTATTTACGTGGC-AATTGT-TCTCTCTTGGTTCTTG
* *
10202042 GATGAACTTTCGAATTTGT
256 GACGAACTTTCGAACTTGT
10202061 TAAACTTTCA
Statistics
Matches: 467, Mismatches: 74, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
275 32 0.07
276 112 0.24
277 70 0.15
278 32 0.07
279 161 0.34
280 60 0.13
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCTTAAAGTATTCAAGATGATCCATTCTTTTGAGCAA
TTTTTTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGATCCTTAATTAATAACTTATTTACGTGGCAATTGTTCTCTCTTGGTTCTTGGACGA
ACTTTCGAACTTGTC
Done.