Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 45 of 144
Found at i:10202063 original size:770 final size:770
Alignment explanation
Indices: 10200459--10202341 Score: 2652
Period size: 770 Copynumber: 2.4 Consensus size: 770
10200449 CGAACTTGTC
* * * * *
10200459 AAAAACTTATTTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAA-AATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* * * * * ** *
10200524 CTTTTATGATTTCTTATATAACTTCA-GTTCCTGAAAGTATTCAAGATAATCCATT-CTTTCTAG
64 CTTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAG
* * * * *
10200587 C-AATTTTTCAAACATTCCATGCTC-AGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTT
127 CAAATTTCT-AAACATTCCATGCTCGA-GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
* * * *
10200650 GTAAACAAGTTTTGGTC-CTTGAATTAAA-AACTTATTTACGTGAGAATTGGTTCTCTCTTGATT
190 GTAAACAAGTTTTGGACTCTT-AATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTT
* *
10200713 CTTGGA-TGAGCTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCT
254 CTTGGACT-AACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCT
* * *
10200777 TGGACAAATATCCAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTAT
318 TGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTTCGGTTCCTGAAAGTAT
* *
10200842 TCAAGATGATCCATTCTTTCTAGCATTTTTCGAACATTTCATGCTCGGGAGATCACATAATTTGA
383 TCAAGATGATCCATTCTTTCTAGCATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGA
*
10200907 TCTAAATAGTTTGTCTTCTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTATTTACGTGAGAA
448 TCTAAATAGTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAACTATTTACGTGAGAA
* * *
10200972 TTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTG
513 TTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTG
* *
10201037 TTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTT
578 TTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTT
*
10201102 CGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTGCT
643 CGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAACAATCCA-GCTGCT
* * *
10201167 CGGAAAATGCCATCATTTGTCTAAATAGTTTGTCATTTAAAAAACAAGTTTTGGTCTTTAAATT
707 CGAAAAATCCCATCATTTGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAATT
* * * * *
10201231 AAAAAGTTATTTACGTGAGAATTGTATCTCCTAGGTTCTCGGACGAACTTTTGAACTTGTTAAAC
1 AAAAACTTATTTACGT-AAAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
*
10201296 TTTCACGAGTTCTTTTATAACCTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
10201361 ATTTCTAAACATT-CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
130 ATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
10201425 TAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 CAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
10201490 CTAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGA
260 CTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10201555 ACATCCGAAACTTGTCAAACTTTTACGATTTCCTT-TATAGCTTCGGTTCTTGAAAGTATTCAAG
325 ACATCC-AAACTTGTCAAACTTTTACGATTT-CTTATATAACTTCGGTTCCTGAAAGTATTCAAG
* * *
10201619 ATGATCCATTCTTT-TGAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCT
388 ATGATCCATTCTTTCT-AGC-ATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCT
* * * *
10201683 AAATAGTTTGTTTTTTTGTAAACAAGTTTTGATCCTTGAATTAATAACTTTTTTACGTG-GCAAT
451 AAATAGTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAAC-TATTTACGTGAG-AAT
* * * * * *
10201747 TTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAGACTTATTTACATGAGTACTGT
514 TGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGT
* * * *
10201812 TTCACTCTTGGTTC-TGGATGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTC
579 TTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTC
* ** *
10201876 AG-TTCC-AAAAGTATTTAAGTTAATCCATTCCTTCTAGAAATTTTTTGAGA-AATCCA-C-GCT
644 -GTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGA-ACAATCCAGCTGCT
* ***
10201936 CGAAAAATCCCATCATTTTGTCTCAATAGTTTGCCATTTTGTAAACAAGTTTTGGTCTTTAAATT
707 CGAAAAATCCCATCA-TTTGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAATT
* * *
10202001 AAAAACTTATTTACGTACAAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAATTTGTTAAAC
1 AAAAACTTATTTACGTA-AAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAC
* *
10202066 TTTCACAAGTTCTTTTATAACTTAGGTTCCTTACAGTATTCAAGACGATCCATTCCTTTGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
* *
10202131 ATTTCCAAACATTCCATACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
130 ATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
10202196 CAAG-TTTGGACTGTTAATT-AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
195 CAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
10202259 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGA
260 CTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10202324 ACTTCCAAACTTGTCAAA
325 ACATCCAAACTTGTCAAA
10202342 AACTTATTTA
Statistics
Matches: 994, Mismatches: 98, Indels: 42
0.88 0.09 0.04
Matches are distributed among these distances:
768 12 0.01
769 124 0.12
770 251 0.25
771 241 0.24
772 146 0.15
773 138 0.14
774 82 0.08
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (770 bp):
AAAAACTTATTTACGTAAAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAA
TTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
TAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CATCCAAACTTGTCAAACTTTTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATG
ATCCATTCTTTCTAGCATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATA
GTTTGTCTTCTTGTAAACAAGTTTTGATCCTTGAATTAAAAACTATTTACGTGAGAATTGGTTCT
CTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTC
TTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGTTTCCA
AAAAGTATTCAAGAGAATCCATTCCTTCTAGAAATTTTTCGAACAATCCAGCTGCTCGAAAAATC
CCATCATTTGTCTAAATAGTTTGCCATTTAAAAAACAAGTTTTGGTCTTTAAATT
Found at i:10202441 original size:61 final size:62
Alignment explanation
Indices: 10202218--10202463 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10202208 GTTAATTAAT
* *
10202218 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10202280 AACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10202342 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10202403 AAC-TATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10202464 CTTTTATGAT
Statistics
Matches: 174, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
60 26 0.15
61 59 0.34
62 89 0.51
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10202441 original size:122 final size:124
Alignment explanation
Indices: 10202218--10202463 Score: 415
Period size: 122 Copynumber: 2.0 Consensus size: 124
10202208 GTTAATTAAT
10202218 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10202283 TTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTACATGAGAATTGTTTCTCTCTAGGTACTTGGACGAACATCCAAACTTGTCAAA
*
10202342 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10202406 -TATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAA
66 TTATTTACATGAGAATTGTTTCTCTCTAGGTACTTGGACGAACATCCAAACTTGTCAAA
10202464 CTTTTATGAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
122 52 0.45
123 33 0.29
124 30 0.26
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACATGAGAATTGTTTCTCTCTAGGTACTTGGACGAACATCCAAACTTGTCAAA
Found at i:10202739 original size:399 final size:397
Alignment explanation
Indices: 10202075--10202799 Score: 1049
Period size: 399 Copynumber: 1.8 Consensus size: 397
10202065 CTTTCACAAG
* *
10202075 TTCTTTTATAACTTAGGTTCCTTACAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAA
1 TTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAA
* * *
10202140 CATTCCATACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTGG
66 CATTCCATACTCGAGAAATCACATAATTTGATCAAAATAATTTGTCATTTTGTAAACAAGTTTGG
** * * * ** *
10202205 ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAA
131 ACCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTCTTAGCTCTTGGACGAACTTCCAA
*
10202270 ACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACT
196 ACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACT
* * *
10202335 TGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTC
261 TGTCAAAAA-TTATTTACGTAAGAATTGTTTCTCT-TGGTTCTTGGACGAACATCCAAACTTGTC
10202400 AAAAACTATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAAC
324 AAAAACTATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAAC
10202465 TTTTATGAT
389 TTTTATGAT
* * * * ***
10202474 TTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTTGAA
1 TTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAA
* * **
10202539 CATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTC-TTTTGTAAACAAGTTTTG
66 CATTCCATACTCGAGAAATCACATAATTTGATCAAAATAATTTGTCATTTTGTAAACAAG-TTTG
* * * * * *
10202603 GTCCCTGAGTTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCG
130 GACCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTCTTAGCTCTTGGACGAACTTCCA
* * **
10202668 AACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTA-GTTTTTGGACGAACTTCTGAA
195 AACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTC-TAGGTTCTTGGACGAACTTCCAAA
*
10202732 CTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
259 CTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10202797 AAA
324 AAA
10202800 CTTTTACGAT
Statistics
Matches: 285, Mismatches: 39, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
397 29 0.10
398 37 0.13
399 217 0.76
400 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (397 bp):
TTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAA
CATTCCATACTCGAGAAATCACATAATTTGATCAAAATAATTTGTCATTTTGTAAACAAGTTTGG
ACCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTCTTAGCTCTTGGACGAACTTCCAA
ACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACT
TGTCAAAAATTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
AAACTATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAACTT
TTATGAT
Found at i:10202792 original size:59 final size:62
Alignment explanation
Indices: 10202614--10202799 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 62
10202604 TCCCTGAGTT
* * * ** * *
10202614 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10202676 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
10202738 AAAAA-TTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10202797 AAA
1 AAA
10202800 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
59 33 0.31
60 2 0.02
61 15 0.14
62 57 0.53
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10203050 original size:62 final size:61
Alignment explanation
Indices: 10202953--10203139 Score: 214
Period size: 62 Copynumber: 3.0 Consensus size: 61
10202943 CCTTGAATTA
* * * *
10202953 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
10203015 AAAAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTC
1 AAAAACTTATTTACATGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * * *
10203077 AAAAAATTATTTACGTAAGAAT-TTTCTCTCTTAGTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACATGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10203137 AAA
1 AAA
10203140 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
60 34 0.32
61 2 0.02
62 69 0.66
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACATGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10203478 original size:62 final size:62
Alignment explanation
Indices: 10203290--10203478 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10203280 TCCTTGAATT
* * * *
10203290 AAAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
10203352 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * * *
10203414 AAAAACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10203476 AAA
1 AAA
10203479 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10203595 original size:676 final size:675
Alignment explanation
Indices: 10202277--10203753 Score: 2121
Period size: 676 Copynumber: 2.2 Consensus size: 675
10202267 CAAACTTGTC
* * * *
10202277 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10202342 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACATGTCAAAAAC
* * * * *
10202406 TATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTAT
131 TATTTACATAAGAATTGTTTCTCTCTTAGTACTTGGACGAACATCCAAACTTGTCAAACTTTTAC
* * * *
10202471 GATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTT
196 GATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTTTTT
* * * *
10202536 GAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTCTTTTGTAAACAAGTTT
261 GAACAATCCATGCTCGAGAAATCACATAATTTGATCTAAACAATTTGTCTTTTGTAAACAAGTTT
* * * *
10202601 TGGTCCCTGAGTTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTT
326 CGGTCCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTATTGGCTCTTGGACGAACTTT
* *
10202666 CGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGA
391 CAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGA
* * *
10202731 ACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
456 ACTTCTCAAAAATTATTTACGTAAGAATCGTTTCTCTTGCTTCTTGGACGAACATCCGAACTTGT
* * *
10202796 CAAACTTTTACGATTTTTTATATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCG
521 CAAACTTTTACGATTTTTTATATAACTTCGATTCATAAAAGTATTCAAGATAATCCATTCTTTCG
* *
10202861 AGAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAAATAGTTTGTCATTT
586 AGAAATTTTTCAAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAAATAGTTTGTCA-TT
*
10202926 TGTAAACAAGTTTTGGTCCTTGAATT
650 TGTAAACAAGTTTTGGTCCTTCAATT
* *
10202952 AAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 -AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10203017 AAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACATGTC-AAAA
* * * * *
10203082 ATTATTTACGTAAGAA-T-TTTCTCTCTTAGTTCTTGGACGAACATCCGATCTTGTCAAACTTTT
129 ACTATTTACATAAGAATTGTTTCTCTCTTAGTACTTGGACGAACATCCAAACTTGTCAAACTTTT
* *
10203145 ACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTTT
* * *
10203210 TTGAGCAATCCATGCTCGAGAAATCGCATAATTTTG-TCTAAACAGTTTGTCTTTTGTAAACAAG
259 TTGAACAATCCATGCTCGAGAAATCACATAA-TTTGATCTAAACAATTTGTCTTTTGTAAACAAG
* * * * * *
10203274 TTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAAC
323 TTTCGGTCCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTATTGGCTCTTGGACGAAC
*
10203339 TTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTT-
388 TTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
10203403 TCGAACTTCTCAAAAACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCG
453 T-GAACTTCTCAAAAA-TTATTTACGTAAGAATCG-TT-TCTCTTGCTTCTTGGACGAACATCCG
* *
10203468 ATCTTGTCAAACTTTTACGATTTCTTT-TATAACTTCGATTCCA-AAAAGTATTCAAGGTAATCC
514 AACTTGTCAAACTTTTACGATTT-TTTATATAACTTCGATT-CATAAAAGTATTCAAGATAATCC
* ** * *
10203531 ATTAC-TTCTAGAAA-TTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCT-AACTAG
577 ATT-CTTTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAAATAG
* *
10203592 TTTGTCATTTGTAAACCAGTTTTGGTCTTTCAATT
641 TTTGTCATTTGTAAACAAGTTTTGGTCCTTCAATT
**
10203627 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10203692 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACATGTCAAA
10203754 CTTTTATGAT
Statistics
Matches: 711, Mismatches: 80, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
673 3 0.00
674 111 0.16
675 26 0.04
676 378 0.53
677 55 0.08
678 45 0.06
679 87 0.12
680 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (675 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACATGTCAAAAAC
TATTTACATAAGAATTGTTTCTCTCTTAGTACTTGGACGAACATCCAAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTTTTT
GAACAATCCATGCTCGAGAAATCACATAATTTGATCTAAACAATTTGTCTTTTGTAAACAAGTTT
CGGTCCCTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTATTGGCTCTTGGACGAACTTT
CAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGA
ACTTCTCAAAAATTATTTACGTAAGAATCGTTTCTCTTGCTTCTTGGACGAACATCCGAACTTGT
CAAACTTTTACGATTTTTTATATAACTTCGATTCATAAAAGTATTCAAGATAATCCATTCTTTCG
AGAAATTTTTCAAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAAATAGTTTGTCATTT
GTAAACAAGTTTTGGTCCTTCAATT
Found at i:10203596 original size:337 final size:340
Alignment explanation
Indices: 10202277--10203753 Score: 2018
Period size: 337 Copynumber: 4.4 Consensus size: 340
10202267 CAAACTTGTC
* * * *
10202277 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10202342 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * * * * *
10202406 -TATTTACATGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10202470 TGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAATTTT
* * * * *
10202535 TGAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAA-TAATTTGTCTTTTGTAAACAAGT
261 CGAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAACTAGTTTGTCTTTTGTAAACAAGT
* *
10202599 TTTGGTCCCTGAGTT
326 TTTGGTCCTTGAATT
* * * *
10202614 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10202679 AACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTCAAAAA-
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
10202743 TTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
10202806 CGATTT-TTTATATAACTTCGGTT-CATGAAAGTATTCAAGATGATCCATTCTTTCGAG-AAATT
196 CGATTTCTTT-TATAACTTCGGTTCCA-GAAAGTATTCAAGATGATCCATTCTTTCGAGCAAA-T
* *
10202868 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAAATAGTTTGTCATTTTGTAAAC
258 TTTCGAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAACTAGTTTGTC-TTTTGTAAAC
10202933 AAGTTTTGGTCCTTGAATT
322 AAGTTTTGGTCCTTGAATT
* *
10202952 AAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 -AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10203017 AAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* * *
10203082 ATTATTTACGTAAGAA-T-TTTCTCTCTTAGTTCTTGGACGAACATCCGATCTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
** * * * *
10203145 ACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTTT
195 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAATTT
* * *
10203210 TTGAGCAATCCATGCTC-GAGAAATCGCATAATTTTG-TCTAAAC-AGTTTGTCTTTTGTAAACA
260 TCGAACATTCCATGCTCGGA-AAATCGCATAA-TTTGATCTAAACTAGTTTGTCTTTTGTAAACA
*
10203272 AGTTTCGGTCCTTGAATT
323 AGTTTTGGTCCTTGAATT
* * * *
10203290 AAAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10203355 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
10203420 TTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10203485 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAG-AAATTT
196 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATT-CTTTCGAGCAAATTT
* ** * * *
10203548 TCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCT-AACTAGTTTGTCATTTGTAAACCAG
260 TCGAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAACTAGTTTGTCTTTTGTAAACAAG
* *
10203611 TTTTGGTCTTTCAATT
325 TTTTGGTCCTTGAATT
**
10203627 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10203692 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10203754 CTTTTATGAT
Statistics
Matches: 1014, Mismatches: 104, Indels: 44
0.87 0.09 0.04
Matches are distributed among these distances:
335 6 0.01
336 135 0.13
337 380 0.37
338 122 0.12
339 224 0.22
340 138 0.14
341 9 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAATTTT
CGAACATTCCATGCTCGGAAAATCGCATAATTTGATCTAAACTAGTTTGTCTTTTGTAAACAAGT
TTTGGTCCTTGAATT
Found at i:10203729 original size:62 final size:62
Alignment explanation
Indices: 10203627--10203753 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10203617 TCTTTCAATT
* * * *
10203627 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
* **
10203689 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
10203751 AAA
1 AAA
10203754 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
Found at i:10203985 original size:278 final size:277
Alignment explanation
Indices: 10203352--10204800 Score: 2237
Period size: 278 Copynumber: 5.2 Consensus size: 277
10203342 CAAACTTGTC
* * * * *
10203352 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10203417 AACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** * * *
10203482 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAG-AAA
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAAT
* * * ** * * * *
10203545 TTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTGTAAACC
195 TTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTGTAAACA
* *
10203609 AGTTTTGGTCTTTCAATT
260 AGTTTTGGTCCTTGAATT
*
10203627 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTAATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10203692 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
10203757 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
10203822 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTTTGTAAACA
10203887 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10203905 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10203970 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10204035 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
*
10204100 TTTCAAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTT-TTGTAAACA
10204165 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10204183 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10204248 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10204313 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
*
10204378 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAAAA
196 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTT-TTGTAAACA
10204443 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
* *
10204461 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10204526 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * * ** * *
10204591 TTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAA
131 TTATGATTTCTTATATAAC-TTCGGTTCCTGAAAGTATTCAAGATG-ATCCATTCTTTCTAGCAA
* * * * ***
10204655 TTTTTCGAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
194 TTTTTCGAACATTTCATGCTCGGGAAAT-CACATAATTTGATCTAAATAGTTTGTC-TTT-TGTA
* *
10204719 AACAAGTTTTGGTCTTTAAATT
256 AACAAGTTTTGGTCCTTGAATT
* * * * *
10204741 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10204801 TAAACTTTCA
Statistics
Matches: 1099, Mismatches: 64, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
274 1 0.00
275 171 0.16
276 27 0.02
277 23 0.02
278 717 0.65
279 112 0.10
280 48 0.04
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTGTAAACAA
GTTTTGGTCCTTGAATT
Found at i:10204007 original size:62 final size:62
Alignment explanation
Indices: 10203905--10204031 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10203895 TCCTTGAATT
* * * *
10203905 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10203967 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10204029 AAA
1 AAA
10204032 CTTTTATGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10204258 original size:62 final size:62
Alignment explanation
Indices: 10204183--10204309 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10204173 TCCTTGAATT
* * * * *
10204183 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
* *
10204245 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
10204307 AAA
1 AAA
10204310 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
Found at i:10204544 original size:62 final size:62
Alignment explanation
Indices: 10204461--10204587 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10204451 TCCTTGAATT
* * * * * *
10204461 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10204523 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10204585 AAA
1 AAA
10204588 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10204907 original size:216 final size:217
Alignment explanation
Indices: 10204523--10205021 Score: 634
Period size: 216 Copynumber: 2.3 Consensus size: 217
10204513 CGAACTTGTC
* * * *
10204523 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10204588 CTTTTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
66 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
* * *
10204653 AATTTTTCGAACATTCCATGCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAA
131 AATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTT-AAA
*
10204718 AAACAAGTTTTGGTCT-TTAAATT
195 AAACAAGTTTTGGACTCTT-AATT
* * * * * *
10204741 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
**
10204805 CTTTCACGAGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTT-TGA
66 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCT-A
*
10204867 GAAAATTTCT-AAACATTCCATGCTCGGGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
129 G-AAATTTCTCAAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10204930 TGTAAATAAGTTTTGGACTCTTAATT
192 AAAAAACAAGTTTTGGACTCTTAATT
* *
10204956 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10205021 A
65 A
10205022 GACTTATTTA
Statistics
Matches: 240, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
215 23 0.10
216 107 0.45
217 83 0.35
218 27 0.11
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
AATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAA
AACAAGTTTTGGACTCTTAATT
Found at i:10205058 original size:62 final size:62
Alignment explanation
Indices: 10204960--10205207 Score: 361
Period size: 62 Copynumber: 4.0 Consensus size: 62
10204950 TTAATTAAAT
* * * *
10204960 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10205022 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10205084 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10205146 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10205208 CTTTTACGAT
Statistics
Matches: 164, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 164 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10205670 original size:276 final size:275
Alignment explanation
Indices: 10205081--10205697 Score: 706
Period size: 276 Copynumber: 2.2 Consensus size: 275
10205071 CAAACTTGTC
* * * * * *
10205081 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGACAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* * *
10205146 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
65 AACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * *
10205211 TTACGATTTCCTTTATAGCTTCGGTTCTTGTAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
130 TTACGATTTCCTTTATAACTTCGGTTCTTGAAAGTATTCAAGATAATCCATTCTTCTGAGAAATT
* * ** * * **
10205276 TTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATGGTTTGTTTTTTGTAAACAAG
195 TTTGAACAATCCACGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTGTAAACAAG
*
10205341 TTTCGATCCTTGAATT
260 TTTCGATCCTTAAATT
* * *
10205357 AATAACTTTTTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGACAA-TTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
* * * * * *
10205422 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTT
65 AACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10205487 TTACGATTTCTTTTATAACTTCGGTTC-T-AACAGTATTTAAGTTAATCCATTCCTTCT-AGAAA
130 TTACGATTTCCTTTATAACTTCGGTTCTTGAA-AGTATTCAAGATAATCCATT-CTTCTGAGAAA
* * *
10205549 TTTTTTGAGA-AATCCACGCTCGAAAAATCCCATCATTTTGTCTCAATAGTTTGCCATTTTGTAA
193 -TTTTTGA-ACAATCCACGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTG-CATTTTGTAA
* * *
10205613 ACAAGTTTTGGTCTTTAAATT
255 ACAAGTTTCGATCCTTAAATT
* ** *
10205634 AAAAACTTATTTACGT-ACTAATTGTATCTC-CTTGGTTGTTGGTTGAACTTTCGAATTTGTTAA
1 AAAAACTTATTTACGTGAC-AATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
10205697 A
64 A
10205698 CTTTCACAAG
Statistics
Matches: 285, Mismatches: 48, Indels: 16
0.82 0.14 0.05
Matches are distributed among these distances:
274 1 0.00
275 22 0.08
276 214 0.75
277 48 0.17
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (275 bp):
AAAAACTTATTTACGTGACAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAAA
ACTTATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCCTTTATAACTTCGGTTCTTGAAAGTATTCAAGATAATCCATTCTTCTGAGAAATTT
TTGAACAATCCACGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTGTAAACAAGT
TTCGATCCTTAAATT
Found at i:10205950 original size:62 final size:62
Alignment explanation
Indices: 10205852--10206161 Score: 530
Period size: 62 Copynumber: 5.0 Consensus size: 62
10205842 GTTAATTAAT
* *
10205852 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10205914 AACTTATTTACGTGACAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10205976 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10206038 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10206100 AACTTATTTACGTGAGAATTGTTTCTCTGTTGGTACTTGGATGAACATCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10206162 CTTTTATGAT
Statistics
Matches: 235, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 235 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10206418 original size:62 final size:61
Alignment explanation
Indices: 10206313--10206501 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
10206303 TCCCTGAGTT
* * ** *
10206313 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * *
10206375 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * * *
10206437 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10206499 AAA
1 AAA
10206502 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 3 0.03
62 105 0.95
63 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10206593 original size:340 final size:340
Alignment explanation
Indices: 10205973--10207458 Score: 2052
Period size: 340 Copynumber: 4.4 Consensus size: 340
10205963 TAAACTTGTC
* * * *
10205973 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10206038 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
* * * * * *
10206103 TTATTTACGTGAGAATTGTTTCTCTGTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10206168 TGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTT
196 CGATTTCTTTTATAACTTCGATTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
* * * * *
10206233 TGAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTCTTTTTGTAAACAAGT
261 CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10206298 TTTGGTCCCTGAGTT
326 TTTGGTCCTTGAATT
* * *
10206313 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10206378 AACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTCAAAAAA
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
10206443 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
10206508 CGATTT-TTTATATAACTTCGATTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
196 CGATTTCTTT-TATAACTTCGATTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
10206572 TCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAAATAGTTTGTCATTTTGTAAACAA
260 TCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCT-AAATAGTTTGTCATTTTGTAAACAA
10206637 GTTTTGGTCCTTGAATT
324 GTTTTGGTCCTTGAATT
*
10206654 AAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 -AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10206719 AAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
*
10206784 ATTATTTACGTAAGAATT-TTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
130 ATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * * *
10206848 ACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTTT
195 ACGATTTCTTTTATAACTTCGATTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
* * * * * *
10206913 TTGAGCAATCCATGCTCGAGAAATCGCATAATTTTG-TCTAAACAGTTTGTCTTTTTGTAAACAA
260 TCGAACATTCCATGCTCGGGAAATCGCATAA-TTTGATCTAAATAGTTTGTCATTTTGTAAACAA
*
10206977 GTTTCGGTCCTTGAATT
324 GTTTTGGTCCTTGAATT
** * * * * *
10206994 AAAAACTTATTTAAGTAAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10207059 AACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
* * *
10207124 TTATTTACGTGAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * *
10207189 CGATTTCTTTTATAACTTCGATTCCA-AAAAGTATTCAAGGTAATCCA-TCACTTCTAGAAAATT
196 CGATTTCTTTTATAACTTCGATT-CATGAAAGTATTCAAGATGATCCATTC-TTTCGAGAAATTT
* * ** * * *
10207252 TTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACCA
259 TTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
* *
10207316 GTTTTGGTCTTTCAATT
324 GTTTTGGTCCTTGAATT
*
10207333 AAAAACTTATTTA-TGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACT-TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * *
10207397 AAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT-CAAACTTGTCAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10207459 CTTTTATGAT
Statistics
Matches: 1018, Mismatches: 118, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
338 15 0.01
339 273 0.27
340 417 0.41
341 168 0.17
342 145 0.14
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGATTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTGAATT
Found at i:10206752 original size:62 final size:62
Alignment explanation
Indices: 10206655--10206842 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 62
10206645 CCTTGAATTA
* * * *
10206655 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10206717 AAAAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10206779 AAAAAATTATTTACGTAAGAATT-TTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10206840 AAA
1 AAA
10206843 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 35 0.33
62 72 0.67
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10207092 original size:62 final size:62
Alignment explanation
Indices: 10206994--10207182 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10206984 TCCTTGAATT
* * * * * *
10206994 AAAAACTTATTTA-AGTAAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACA-TGAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
10207056 AAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACATGAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
10207118 AAAAACTTATTTACGTGAG-AATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGTAAT-GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10207180 AAA
1 AAA
10207183 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 2 0.02
62 109 0.97
63 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10207435 original size:62 final size:61
Alignment explanation
Indices: 10207333--10207458 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 61
10207323 TCTTTCAATT
* * * *
10207333 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAAC-ATCAAACTTGTC
* *
10207395 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-AGTTCTTGGATGAACATCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGA-TTCTTGGACGAACATCAAACTTGTC
10207456 AAA
1 AAA
10207459 CTTTTATGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
61 14 0.25
62 43 0.75
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCAAACTTGTC
Found at i:10207577 original size:277 final size:277
Alignment explanation
Indices: 10207056--10208226 Score: 1690
Period size: 278 Copynumber: 4.2 Consensus size: 277
10207046 CAAACTTGTC
* * * * * *
10207056 AAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10207121 AACTTATTTACGTGAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * * *
10207186 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCA-TCACTTCTAGAAAA
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTC-CTTCTAGAAAT
** * *
10207250 TTTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATT-TTGTAAAC
195 TTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
* * *
10207314 CAGTTTTGGTCTTTCAATT
259 AAGTTTTGGTCCTTGAATT
*
10207333 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10207398 AACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT-CAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** * *
10207462 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGAAATT
** * *
10207527 TTTTGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
196 TTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
10207592 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10207610 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10207675 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* ** * *
10207740 TTAGGATTTCTTTTATAACTTCATTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGAAATT
* * *
10207805 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
196 TTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACA
10207870 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
10207888 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
*
10207953 AACTTATTTACGTAAGAATTGTTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTTAAACT
66 AACTTATTTACGTAAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
10208018 TTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAA
130 TTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATG-ATCCATTCCTTCTAGAAA
* * * ***
10208082 TTTTTCAAACATTCCATTCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATT-TAAAAA
194 TTTTTCAAACATTCCATGCTCGGAAAAT-CCATAATTTGATCTAAATAGTTTGTC-TTCTTGTAA
* * *
10208146 ACAAGTTTTGTTCTTTAAATT
257 ACAAGTTTTGGTCCTTGAATT
* * * *
10208167 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10208227 TAAACTTTCA
Statistics
Matches: 821, Mismatches: 64, Indels: 17
0.91 0.07 0.02
Matches are distributed among these distances:
276 92 0.11
277 258 0.31
278 275 0.33
279 193 0.24
280 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGAAATT
TTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCTTCTTGTAAACAA
GTTTTGGTCCTTGAATT
Found at i:10207685 original size:62 final size:62
Alignment explanation
Indices: 10207610--10207736 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10207600 TCCTTGAATT
* * * *
10207610 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10207672 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10207734 AAA
1 AAA
10207737 CTTTTAGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10208009 original size:63 final size:62
Alignment explanation
Indices: 10207888--10208011 Score: 185
Period size: 63 Copynumber: 2.0 Consensus size: 62
10207878 TCCTTGAATT
* * * *
10207888 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10207950 AAAAACTTATTTACGTAAGAATTGTTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGT
1 AAAAACTTATTTACGTAAGAATTG-GTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGT
10208012 TAAACTTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
62 23 0.42
63 32 0.58
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10208369 original size:215 final size:216
Alignment explanation
Indices: 10207950--10208890 Score: 636
Period size: 215 Copynumber: 4.3 Consensus size: 216
10207940 CGAACTTGTC
* * * *
10207950 AAAAACTTATTTACGTAAGAATTGTTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTTAA
1 AAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
* * * * * *
10208015 ACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
* * * *
10208080 AATTTTTCAAACATTCCATTCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAA
130 AATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAA
**
10208145 AACAAGTTTTGTTCT-TTAAATT
195 AACAAGTTTTGGACTCTT-AATT
* * * *
10208167 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
**
10208231 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
10208295 AAATTTCT-AAACATTCCATGCTCA-AGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTTT
129 AAATTTCTCAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTTA
** *
10208357 GTAAATAAGTTTTGGACTCTTAATT
192 AAAAACAAGTTTTGGACTCTTAATT
* * *
10208382 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT-TA
* * * **** * * *
10208447 AGACTTATTTACATGAGTACTGTTT-T-ACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA-
64 A-AC---TTT-CACGAGTTCT-TTTATAACT-TAGGTTCCAAAAAGTA-TT-C-AA---GACAAT
** ** * ** * **
10208509 AAACTTATTTACGT-GAGAATTATCTC--TC-TT-GGTTCTTGGACTAACAT-CCGA--ATTT-G
116 CCA-TTCCTT-C-TAGA-AATT-TCTCAAACATTCCATGCTCAGA--AA-ATGCC-ATCATTTGG
* * * *******
10208565 TCAAAA-ACTTATAT-ACGTTACAATTGTTTCTCTCTTGG-CTCTTTTAAATT
172 TCAAAATAGTT-TGTCA-TTTA-AAAAACAAGT-T-TTGGACTC--TT-AATT
* * * * * *
10208615 AAAAACTTATTTACCTAAGAATTGTATGTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
** * * *
10208679 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAG-A
* **
10208744 AATTTC-CAAACATTCCATGCTC-GAGAAAT-CACATCATTTCGTCAAAATAGTTTGTCATTTCG
130 AATTTCTCAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTTAA
* *
10208806 TAAACAAGTTTTGGACTGTTAATT
193 AAAACAAGTTTTGGACTCTTAATT
* * *
10208830 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
10208891 CAAAAACTTA
Statistics
Matches: 554, Mismatches: 113, Indels: 115
0.71 0.14 0.15
Matches are distributed among these distances:
214 3 0.01
215 176 0.32
216 71 0.13
217 60 0.11
218 14 0.03
219 20 0.04
220 15 0.03
221 4 0.01
222 8 0.01
223 20 0.04
224 10 0.02
225 20 0.04
226 8 0.01
227 4 0.01
228 15 0.03
229 20 0.04
230 15 0.03
231 39 0.07
232 25 0.05
233 7 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTTGGACTCTTAATT
Found at i:10208566 original size:60 final size:60
Alignment explanation
Indices: 10208386--10208607 Score: 232
Period size: 62 Copynumber: 3.6 Consensus size: 60
10208376 TTAATTAAAT
* *
10208386 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAA-TG-TTCTCTCTTGGTTCTTGGACT-AACTTCCGAACTTGTCAAA
* * * * * *
10208448 GACTTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAG-AATGTTCT-CTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
* *
10208510 AACTTATTTACGTGAGAAT-TATCTCTCTTGGTTCTTGGACTAACATCCGAATTTGTCAAA
1 AACTTATTTACGTGAGAATGT-TCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
* * * *
10208570 AACTTATATACGTTACAATTGTTTCTCTCTTGGCTCTT
1 AACTTATTTACGTGAGAA-TG-TTCTCTCTTGGTTCTT
10208608 TTAAATTAAA
Statistics
Matches: 133, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
60 48 0.36
61 8 0.06
62 75 0.56
63 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATGTTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
Found at i:10208930 original size:62 final size:61
Alignment explanation
Indices: 10208833--10209018 Score: 282
Period size: 62 Copynumber: 3.0 Consensus size: 61
10208823 GTTAATTAAT
*
10208833 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
*
10208895 AACTTATTTATGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * *
10208957 AACTTATTTACGTGAGAATTGTTTTACTCTGGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTT-CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10209019 CTTTTATGAT
Statistics
Matches: 114, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
61 1 0.01
62 113 0.99
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
Found at i:10209301 original size:61 final size:62
Alignment explanation
Indices: 10209169--10209356 Score: 272
Period size: 61 Copynumber: 3.0 Consensus size: 62
10209159 TCCTTGAATT
* ** *
10209169 AAAAACTTAATTACT-TGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTA-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10209231 AAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTCCAAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10209292 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10209354 AAA
1 AAA
10209357 CTTTTATGAT
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
61 58 0.51
62 56 0.49
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10209372 original size:338 final size:334
Alignment explanation
Indices: 10208507--10209627 Score: 1416
Period size: 338 Copynumber: 3.4 Consensus size: 334
10208497 CAAACTTGTC
* * * * *
10208507 AAAAACTTATTTACGTGAGAATT-ATCTCTCTTGGTTCTTGGACTAACATCCGAATTTGTCAAAA
1 AAAAACTTAATTACGTGAGAATTGATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* * * *
10208571 ACTTATATACGTTACAATTGTTTCTCTCTTGGCTCTT-------TT--AAA--T-T-AAAAACTT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAAACTT
* * * * * * * * *
10208623 ATTTACCTAAGAATTGTATGTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAACTTTCACG
131 ATTTACGTGAGAATTGT-TTTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATG
* * * * * *
10208687 AGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTACTTT-TAGCAAATTTC
195 ATTTATTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG-AAATTTT
* * * * * * *
10208750 CAAACATTCCATGCTC-GAGAAATCACATCATTTCG-TCAAAATAGTTTGTCATTTCGTAAACAA
257 CAAACATTCCATGCTCAG-GAAATCAAAT-AATT-GATCTAAATAGTTTGTCGTTTTGTAAATAG
** *
10208813 GTTTTGGACTGTTAATT
319 GTTTTGTCCT-TGAATT
* * * *
10208830 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTAATTACGTGAGAATTG-ATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10208895 AACTTATTTATGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAAC
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTCCAAACTTGTCAAAAAC
*
10208960 TTATTTACGTGAGAATTGTTTTACTCTGGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
129 TTATTTACGTGAGAATTGTTTT-CTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
10209025 TGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
193 TGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAA-TTTT
*
10209090 CAAACATTCCATGCTCAGGAAATCAGATAATTGATCTAAATAGTTTGTCGTTTTGTAAATAGGTT
257 CAAACATTCCATGCTCAGGAAATCAAATAATTGATCTAAATAGTTTGTCGTTTTGTAAATAGGTT
10209155 TTGTTCCTTGAATT
322 TTG-TCCTTGAATT
* * *
10209169 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTAATTACGTGAGAATT-GATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10209234 AACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAAACT
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAAACT
10209299 TATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAT
130 TATTTACGTGAGAATTGTTT-TCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAT
*
10209364 GATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAGAAATTTTCA
194 GATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTCA
** *
10209429 AACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAATAGGTTT
259 AACATTCCATGCTCAGGAAATCAAATAA-TTGATCTAAATAGTTTGTCGTTTTGTAAATAGGTTT
10209494 TGGTCCTTGAATT
323 T-GTCCTTGAATT
*
10209507 AAAAACTTAATTACTTGAGAATTGATACTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTAATTACGTGAGAATTGAT-CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10209572 AACTTATTTACGTGAGAATTGATACTCTCTTGGTTCATGGATGAACATCCAAACTT
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGACGAACTTCCAAACTT
10209628 CTGAAACTTT
Statistics
Matches: 706, Mismatches: 62, Indels: 44
0.87 0.08 0.05
Matches are distributed among these distances:
323 21 0.03
325 66 0.09
333 2 0.00
335 3 0.00
337 33 0.05
338 289 0.41
339 181 0.26
340 109 0.15
341 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (334 bp):
AAAAACTTAATTACGTGAGAATTGATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAAACTT
ATTTACGTGAGAATTGTTTTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGA
TTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTCAAA
CATTCCATGCTCAGGAAATCAAATAATTGATCTAAATAGTTTGTCGTTTTGTAAATAGGTTTTGT
CCTTGAATT
Found at i:10209604 original size:62 final size:62
Alignment explanation
Indices: 10209507--10209627 Score: 197
Period size: 62 Copynumber: 2.0 Consensus size: 62
10209497 TCCTTGAATT
* * *
10209507 AAAAACTTAATTACTTGAGAATTGATACTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTAATTACGTGAGAATTGATACTCTCTTGGTTCATGGACGAACATCCAAACTTGTC
* *
10209569 AAAAACTTATTTACGTGAGAATTGATACTCTCTTGGTTCATGGATGAACATCCAAACTT
1 AAAAACTTAATTACGTGAGAATTGATACTCTCTTGGTTCATGGACGAACATCCAAACTT
10209628 CTGAAACTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (62 bp):
AAAAACTTAATTACGTGAGAATTGATACTCTCTTGGTTCATGGACGAACATCCAAACTTGTC
Found at i:10209736 original size:277 final size:276
Alignment explanation
Indices: 10209231--10209791 Score: 793
Period size: 277 Copynumber: 2.0 Consensus size: 276
10209221 CAAACTTGTC
* * * *
10209231 AAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTAATTATGTGAGAATTGATACTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAA
* * * * *
10209296 ACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
66 ACTTATTTACGTGAGAATTGATACTCTCTGGGTTCATGGACGAACATCCAAACTTCTCAAACTTT
* *
10209361 TATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAGAAATTT
131 TACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAAGATGATCCATTATTTCGAGAAATTT
*** * *
10209426 TCAAACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAATAGG
196 TCAAACATCCCATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACAAG
*
10209491 TTTTGGTCCTTGAATT
261 TTTCGGTCCTTGAATT
10209507 AAAAACTTAATTACT-TGAGAATTGATACTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTAATTA-TGTGAGAATTGATACTCTCTTGGTTCTT-GACGAACTTCCAAACTTGTCAA
* * *
10209571 AAACTTATTTACGTGAGAATTGATACTCTCTTGGTTCATGGATGAACATCCAAACTTCTGAAACT
64 AAACTTATTTACGTGAGAATTGATACTCTCTGGGTTCATGGACGAACATCCAAACTTCTCAAACT
* * * *
10209636 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAAT
129 TTTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAAGATGATCCATTATTTCGAG-AAA
* ** *** * *
10209701 TTTTC-AACATCCCATGGTCGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
193 TTTTCAAACATCCCATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAAC
10209765 AAGTTTCGGTCCTTGAATT
258 AAGTTTCGGTCCTTGAATT
10209784 AAAAACTT
1 AAAAACTT
10209792 GTTTACGTGG
Statistics
Matches: 250, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
276 35 0.14
277 208 0.83
278 7 0.03
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (276 bp):
AAAAACTTAATTATGTGAGAATTGATACTCTCTTGGTTCTTGACGAACTTCCAAACTTGTCAAAA
ACTTATTTACGTGAGAATTGATACTCTCTGGGTTCATGGACGAACATCCAAACTTCTCAAACTTT
TACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAAGATGATCCATTATTTCGAGAAATTT
TCAAACATCCCATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACAAG
TTTCGGTCCTTGAATT
Found at i:10209909 original size:62 final size:62
Alignment explanation
Indices: 10209805--10209960 Score: 206
Period size: 62 Copynumber: 2.5 Consensus size: 62
10209795 TACGTGGCAA
* * * * * *
10209805 TTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATTAGTACTGTTTCACTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
* * * *
10209867 TTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
*
10209929 TTGGTTCTTGGAC-AACATCCGAACTTGTCAAA
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10209961 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
61 18 0.22
62 64 0.78
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (62 bp):
TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
Found at i:10210431 original size:62 final size:62
Alignment explanation
Indices: 10210328--10210507 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10210318 GTTAATTAAT
* *
10210328 AACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10210390 GACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10210452 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10210508 CTGAACTTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10210764 original size:62 final size:62
Alignment explanation
Indices: 10210663--10210907 Score: 348
Period size: 62 Copynumber: 4.0 Consensus size: 62
10210653 TCCTTGAATT
* * *
10210663 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
10210725 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
10210787 AAAAACATATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
10210849 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10210908 CGGATACTTT
Statistics
Matches: 160, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
62 159 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10211096 original size:401 final size:400
Alignment explanation
Indices: 10210347--10211246 Score: 1469
Period size: 401 Copynumber: 2.2 Consensus size: 400
10210337 ACGTTAGAAT
* * * * * *
10210347 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
* * *
10210412 TTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTC
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
* *
10210477 TCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAACTTTTACGATTTCTTTTATAACTTCGGTT
131 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGAACTTTTACGATTTCTTTTATAACTTCGGTT
* *
10210542 CCTGAAAATATCCAGGATGATACATTCTTTCGACCAATTTTTCGAACATCTCATGCTCGGGAAAT
196 CCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAAT
* * * * *
10210607 CGTATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTA
261 CGCATAATTTGGTCGAAATAGTTTGTCTTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACTTA
* *
10210672 TTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTT
326 TTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTT
10210737 ACATGAGTAC
391 ACATGAGTAC
* *
10210747 TGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACATATTTACGTAAGAATTGT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
10210812 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
10210877 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGATACTTTTACGATTTCTTTTATAACTTCGGT
131 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGA-ACTTTTACGATTTCTTTTATAACTTCGGT
* * *
10210942 TCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCGAACATCCCATGCTCGGGAAA
195 TCCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAA
*
10211007 TCGCATAATTTGGTCGAAATAGTTTGTCTTTTTCTAAA-AAATTTCGGTCCTTGAAATAAAACCT
260 TCGCATAATTTGGTCGAAATAGTTTGTC-TTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACT
* *
10211071 TATTTGCGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTAT
324 TATTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTAT
*
10211136 TTTCATGAGTAC
389 TTACATGAGTAC
* * *
10211148 TATTTCACCCTTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
* *
10211213 TTCTCTCTTGGTTCTTGGACGAACATCTGAACTT
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10211247 TTCCAACTTT
Statistics
Matches: 462, Mismatches: 36, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
400 152 0.33
401 302 0.65
402 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.38
Consensus pattern (400 bp):
TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTTGGATCTTGGACGAACATCCGAACTTCGGAACTTTTACGATTTCTTTTATAACTTCGGTT
CCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAAT
CGCATAATTTGGTCGAAATAGTTTGTCTTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACTTA
TTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTT
ACATGAGTAC
Found at i:10211168 original size:62 final size:62
Alignment explanation
Indices: 10211099--10211246 Score: 179
Period size: 62 Copynumber: 2.4 Consensus size: 62
10211089 TTCTCTCTTA
* * * * * *
10211099 GTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCCTTG
1 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
* * * * *
10211161 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
1 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
* *
10211223 GTTCTTGGACGAACATCTGAACTT
1 GTTCTTGGACGAACTTCCGAACTT
10211247 TTCCAACTTT
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 73 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (62 bp):
GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
Found at i:10211359 original size:339 final size:340
Alignment explanation
Indices: 10210754--10211467 Score: 911
Period size: 339 Copynumber: 2.1 Consensus size: 340
10210744 TACTGTTTCA
* * * * * * *
10210754 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACATATTTACGTAAGAATTGTTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
* *
10210819 TTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
66 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
* **
10210884 GATCTTGGACGAACATCCGAACTTCGGATACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAA
131 GATCTTGGACGAACATCCGAACTTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * * ** *
10210949 AGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCGAACATCCCATGCTCGGGAAATCGCATA
196 AGTATCCAAGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATA
* * **
10211014 ATTTGGTCGAAATAGTTTGTCTTTTTCTAAA-AAATTTCGGTCCTTGAAA-TAAAACCTTATTTG
261 ATTTGGTCGAAATAGTTTGTCATTTTCTAAACAAATTTCGG-CCTTGAAATTAAAAACTTACATG
10211077 CGTG-GCAATTAGT-TCT
325 CGTGAG-AATT-GTATCT
* * * * * *
10211093 CTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCC
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
10211158 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
66 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
* *
10211223 GTTCTTGGACGAACATCTGAACTTTTC-CA-ACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
131 GATCTTGGACGAACATCCGAAC--TTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
* ** * * * *
10211286 AAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
194 AAAGTATCCAAGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCA
* * * * * *
10211351 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACAT
259 TAATTTGGTCGAAATAGTTTGTCATTTTCTAAACAAATTTCGGCCTTGAAATTAAAAACTTACAT
*
10211416 GCGTGAGAATTGTATGT
324 GCGTGAGAATTGTATCT
* *
10211433 C-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10211468 CTTTCACGAG
Statistics
Matches: 321, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
339 287 0.89
340 30 0.09
341 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (340 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
GATCTTGGACGAACATCCGAACTTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
AGTATCCAAGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATA
ATTTGGTCGAAATAGTTTGTCATTTTCTAAACAAATTTCGGCCTTGAAATTAAAAACTTACATGC
GTGAGAATTGTATCT
Found at i:10211590 original size:215 final size:216
Alignment explanation
Indices: 10211188--10211683 Score: 615
Period size: 215 Copynumber: 2.3 Consensus size: 216
10211178 CGAACTTGAC
** * * * *
10211188 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTTTCCA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * ** * * *
10211252 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGA
* * * * *
10211317 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAA
*
10211382 AACAAGTTTTGGCCT-TTAAATT
195 AACAAGTTTTGGACTGTTAAA-T
* * * * *
10211404 AAAAACTTACATGCGTGAGAATTGTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10211468 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAG-A
10211533 AA-TTTCCAAACATTCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTTGA
130 AATTTTCCAAACATTCCATGCTCGA-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
10211596 AAACAAGTTTTGGACTGTTAAAT
194 AAACAAGTTTTGGACTGTTAAAT
* ** * * *
10211619 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10211684 AACATATTTA
Statistics
Matches: 236, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
215 168 0.71
216 68 0.29
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTTGGACTGTTAAAT
Found at i:10211726 original size:62 final size:62
Alignment explanation
Indices: 10211629--10211801 Score: 301
Period size: 62 Copynumber: 2.8 Consensus size: 62
10211619 AATAACTTAG
*
10211629 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
**
10211691 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10211753 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10211802 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10211914 original size:555 final size:555
Alignment explanation
Indices: 10210849--10212016 Score: 1446
Period size: 555 Copynumber: 2.1 Consensus size: 555
10210839 CGAACTTGCC
** * * * * *
10210849 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACT--TCGG
1 AAAAACTTACATACGTG-GCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTC--
* * * * * *
10210911 ATACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
63 AAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGA
** * * * * * *
10210976 CCAGTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCGAAATAGTTTGTCTTTTTC
128 CCAAATTTCCAAACATCCCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTC
* * * *
10211041 TAAAAAATTTCGGTCCTTGAAATAAAACCTTATTTGCGTGGCAATTAGTTCTCTCTTAGTTCTTG
193 GAAAAAATTTCGGTACTTGAAATAAAACCTTAGTTACGTGGCAATTAGTTCTCTCTTAGTTCTTG
* * * * * *
10211106 GACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCCTTGGTTCTTGGAC
258 GACGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTCTTGGAC
*
10211171 GAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
323 GAACTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * ** *
10211236 CATCTGAACTTTTCCAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTA
388 CATCCGAACTTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATA
* * * *
10211301 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
453 ATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAAT
10211366 AGTTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAAATT
518 AGTTTGTCATTTTGTAAACAAGTTTTGGTCC-TTAAATT
* *
10211404 AAAAACTTACATGCGTGAG-AATT-GTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCA
1 AAAAACTTACATACGTG-GCAATTGGT-TCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTCA
* * *
10211466 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAG
64 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGAC
* *
10211531 CAAATTTCCAAACATTCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTT-
129 CAAATTTCCAAACATCCCATGCTCG-GAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTC
* *
10211594 GAAAACAAGTTTTGG-ACTGTTAAATAATAA-CTTAGTTACGTGAG-AATT-GTTTCTCTCTTAG
193 GAAAA-AA-TTTCGGTACT-TGAAATAA-AACCTTAGTTACGTG-GCAATTAG-TTCTCTCTTAG
* * * * *
10211655 TTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTC
252 TTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTC
* * *
10211720 TTGGACGAACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
317 TTGGACGAACTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
* * *
10211785 GACGAACATCCGAACTTCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAA-TATC
382 GACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATC
* * * * ** *
10211849 CAGGATGATCCATTCTTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGG
446 CAAGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGG
* *
10211914 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATT
511 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
** *
10211959 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
1 AAAAACTTACATACGTGGCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACT
10212017 TCTCAAAGAC
Statistics
Matches: 522, Mismatches: 76, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
553 4 0.01
554 134 0.26
555 345 0.66
556 39 0.07
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
AAAAACTTACATACGTGGCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGACCA
AATTTCCAAACATCCCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTCGAA
AAAATTTCGGTACTTGAAATAAAACCTTAGTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTCTTGGACGAA
CTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATC
CATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:10212069 original size:340 final size:338
Alignment explanation
Indices: 10211417--10212485 Score: 1244
Period size: 340 Copynumber: 3.2 Consensus size: 338
10211407 AACTTACATG
* * * * * * * * *
10211417 CGTGAGAATTGTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTC
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
* * ** * * * *
10211481 TTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAAATTTCCAAACAT
66 TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
* * *
10211546 TCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGA
131 TCCATGCTCG-GAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGA
* * * * * *
10211610 CTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
195 CT-TGAATTAAAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAA
* *
10211675 CTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
258 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTT
*
10211740 GTCAAAAATTTATTTA
323 GTCAAAAACTTATTTA
* *
10211756 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACTATTTC
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
* * * *
10211821 TTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATTCTTTCGACCAATTTTTCGAACAT
66 TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
* * * * *
10211886 CCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
131 TCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG-A
* *
10211951 CTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
195 CTTGAATTAAAAACTTATTTACGTGG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAAC
* * * * * * * *
10212016 TTCTCAAAGACTTATTTACATGA-ATACTATTTCACTCTTAGTTCTTTGACGAACTTCCGAACTT
259 TTGTCAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTT
10212080 GTCAAAAACTTATTTA
323 GTCAAAAACTTATTTA
* *
10212096 CGTAAGAATTG--TCTCTCTTGGTTCTTGGACG-ACATCTGAACTTGTCAAACTTTTA-TGATTT
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACT-ATTT
* * *
10212157 CTTTTATAACTTCGGTTCC-AAAAAGTATTCAAGTTAATCCATTCCTTT--ACAAATTTTTCAAA
65 CTTTTATAACTTCGGTTCCTAAAAA-TATTCAAGATGATCCATT-CTTTCGACCAATTTTTCAAA
* * * ** *
10212219 CATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTCTCTCTTAGTTCTTGGACGAAC
128 CATTCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCT-TT--TT-GTAAAC-AAG
**** * * * *
10212284 TTCCAAACTTG--TCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACAAACT
188 TTTTGGACTTGAATTAAAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
10212347 TCCAACCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACTTCC
252 TTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCC
*
10212412 AAACTTGTCAAACACTTATTTA
317 AAACTTGTCAAAAACTTATTTA
* *
10212434 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10212486 AACTTATTTA
Statistics
Matches: 616, Mismatches: 96, Indels: 34
0.83 0.13 0.05
Matches are distributed among these distances:
336 59 0.10
337 60 0.10
338 152 0.25
339 25 0.04
340 299 0.49
341 21 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (338 bp):
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
TCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAC
TTGAATTAAAAACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTT
GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTTGTC
AAAAACTTATTTA
Found at i:10212336 original size:62 final size:62
Alignment explanation
Indices: 10212258--10212908 Score: 1042
Period size: 62 Copynumber: 10.6 Consensus size: 62
10212248 GGTCTAAATA
* *
10212258 GTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10212320 GTTTCTCTGTTGGTTCTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10212382 GTTTCTCTCTTGGTTCTTTGATGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10212444 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10212506 GTTTC-CT-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10212566 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10212628 G-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10212689 GTTTCTCTCTTGGTTCTAGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10212751 GTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10212811 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10212873 ATTTCTTTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10212909 CTGAAACTTT
Statistics
Matches: 545, Mismatches: 39, Indels: 10
0.92 0.07 0.02
Matches are distributed among these distances:
60 113 0.21
61 62 0.11
62 370 0.68
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10212575 original size:122 final size:123
Alignment explanation
Indices: 10212258--10212908 Score: 1024
Period size: 122 Copynumber: 5.3 Consensus size: 123
10212248 GGTCTAAATA
* *
10212258 GTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AAAACTTATTTACGTGAGAATTGTT
* * *
10212323 TCTCTGTTGGTTCTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATT
65 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10212382 GTTTCTCTCTTGGTTCTTTGATGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA-ACTTATTTACGTGAGAATTGTT
*
10212447 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATT
65 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10212506 GTTTC-CT-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA-CTTATTTACGTGAGAATTGTT
* * * *
10212569 TCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
65 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10212628 G-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA-ACTTATTTACGTGAGAATTGTT
* *
10212692 TCTCTCTTGGTTCTAGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATT
65 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10212751 GTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AAAACTTATTTACGTGAGAATTGTT
* * * *
10212814 TCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
65 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10212873 ATTTCTTTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10212909 CTGAAACTTT
Statistics
Matches: 488, Mismatches: 30, Indels: 18
0.91 0.06 0.03
Matches are distributed among these distances:
121 4 0.01
122 219 0.45
123 118 0.24
124 147 0.30
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (123 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAACTTATTTACGTGAGAATTGTTT
CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10212732 original size:245 final size:245
Alignment explanation
Indices: 10212270--10212908 Score: 1098
Period size: 245 Copynumber: 2.6 Consensus size: 245
10212260 TTCTCTCTTA
* * *
10212270 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * * *
10212335 CTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTT
* * *
10212400 TGATGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
130 GGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGA
* *
10212465 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATTGTTTCCTTTG
195 CGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
*
10212516 GTTCTTGGACGAACTTCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGATT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
10212581 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
10212646 GACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGAC
131 GACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGAC
*
10212711 GAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCTTTTG
196 GAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
10212761 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* *
10212826 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTATTTCTTTCTTGGTTCTT
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTT
* *
10212891 GGACGAACATCCGAACTT
130 GGACGAACTTCCAAACTT
10212909 CTGAAACTTT
Statistics
Matches: 373, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
245 237 0.64
246 136 0.36
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (245 bp):
GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTG
GACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGAC
GAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
Found at i:10213162 original size:62 final size:62
Alignment explanation
Indices: 10213095--10213253 Score: 176
Period size: 62 Copynumber: 2.6 Consensus size: 62
10213085 AATTGGTTCT
* * * * *
10213095 CTCTTGGTTCTTGGACGAACTTTCGAACTTATCAAAGATTTATTTACACGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
* * * * *
10213157 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
* * * * *
10213219 CACTTGGTTCCTGGACG-ACATCCTAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
10213254 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 16 0.20
62 66 0.80
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
Found at i:10213570 original size:214 final size:215
Alignment explanation
Indices: 10213191--10213683 Score: 602
Period size: 214 Copynumber: 2.3 Consensus size: 215
10213181 GAACTTGTCA
** * * *
10213191 AAAACTTATTTACGCAAGAATTGTTTCTCACTTGGTTCCTGGACG-ACATCCTAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* * * * * *
10213255 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTCGAAA
66 TCTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCGAAA
* * * ** * * * *
10213320 TTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATAGTTTGTTA-TTTGTAAA
131 ATTTCCAAACAGACCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
10213384 CAAGTTTTGGCCTTTAAATT
196 CAAGTTTTGGACTGTAAATT
* * * *
10213404 GAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 -AAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
** *
10213468 CTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATATTCCATTCCTT-T-GAA
65 CTCTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCG-A
10213531 CAAATTTCCAAACAGACCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 -AAATTTCCAAACAGACCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
*
10213595 TAAACAAGTTTTGGACTGTGAATT
192 TAAACAAGTTTTGGACTGTAAATT
* * *
10213619 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AA-AACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10213684 AACATATTTA
Statistics
Matches: 236, Mismatches: 36, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
212 1 0.00
213 16 0.07
214 139 0.59
215 50 0.21
216 30 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
TCTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCGAAA
ATTTCCAAACAGACCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTAAATT
Found at i:10213731 original size:62 final size:62
Alignment explanation
Indices: 10213629--10213801 Score: 301
Period size: 62 Copynumber: 2.8 Consensus size: 62
10213619 AATAACTTAG
*
10213629 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10213691 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10213753 TTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10213802 TTGAAACTTT
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 105 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10214053 original size:62 final size:62
Alignment explanation
Indices: 10213959--10214202 Score: 321
Period size: 62 Copynumber: 3.9 Consensus size: 62
10213949 TCCTTGAATT
* * *
10213959 AAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTCA
1 AAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * * *
10214021 AAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
10214083 AAAACTTATTTACGTAAGAATTATATT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
10214145 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
10214203 CTGAAACTTT
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 2 0.01
62 152 0.97
63 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
Found at i:10214080 original size:339 final size:341
Alignment explanation
Indices: 10213405--10214146 Score: 962
Period size: 339 Copynumber: 2.2 Consensus size: 341
10213395 CTTTAAATTG
* * *
10213405 AAAACTTATTTACGTGAGAATTG-TATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGATATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10213468 CTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATATTCCATTCCTTTGAACA
66 CTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGATATTCCATTCCTTTGAACA
*
10213533 AATTTCCAAACAGACCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
10213598 ACAAGTTTTGGACTGTGAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* * *
10213663 CGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGA
10213728 ACTTCCAAACTTGTCA
326 ACTTCCAAACTTGTCA
* * *
10213744 AAAACTTATTTACGTGAGAATTGAT-TCTCTCTTGGTTCTTGGACGAACATCCAAACTTTTGAAA
1 AAAACTTATTTACGTGAGAATTGATATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * * *
10213808 CTTTTACGATTTCTTTTATAACTCCGGTTCCTGAAAATATCCAGGATGA-TCCATT-CTTTCGAC
66 CTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGAT-ATTCCATTCCTTT-GAA
* * * ** * * * *
10213871 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 CAAATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGT
* * *
10213936 AAACAAGTTTCGGTCCT-TGAATTAA-AACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAATTAATAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
*** * * * *
10213998 TGGACAAACTTTTGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTG
257 TGGACAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGG
* *
10214063 ACGAACTTTCGAACTTGTCA
322 ACGAACTTCCAAACTTGTCA
* * *
10214083 AAAACTTATTTACGTAAGAATT-ATATTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGATATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10214147 AACTTATTTA
Statistics
Matches: 346, Mismatches: 50, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
338 3 0.01
339 191 0.55
340 149 0.43
341 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (341 bp):
AAAACTTATTTACGTGAGAATTGATATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGATATTCCATTCCTTTGAACA
AATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTCGGACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTCA
Found at i:10214435 original size:340 final size:339
Alignment explanation
Indices: 10214024--10214763 Score: 943
Period size: 340 Copynumber: 2.2 Consensus size: 339
10214014 CTTGTCAAAG
* * * * * *
10214024 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACT
* * *
10214089 TATTTACGTAAGAATTATATT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
65 TATTTACATAAGAACTAT-TTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
* *
10214153 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
129 TTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
* ** * * * * * *
10214218 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATTCATTCTTTCGACCAGCTTTTCGA
194 TTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTTCGA
* * *
10214283 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTC
259 ACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGTTTC
10214348 GGTCC-TTGAAA-T-AAA
324 GG-CCGTT-AAATTGAAA
*
10214363 ACCTTATTTACGTG-GCAATTGGT-TCTCCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAG
1 A-CTTATTTACGTGAG-AATT-GTATCT-CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * ** *
10214426 ACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATTAACTTCCGAACTTGTTAAAAACT
62 ACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* * *
10214491 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTAC
127 TATTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTAC
* * * * * * *
10214556 GATTTCTTTTATAATTTCAGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAAATTTTTC
192 GATTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTTC
* * * *
10214621 GAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
257 GAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGTT
*
10214686 TTGGCCGTTAAATTGAAA
322 TCGGCCGTTAAATTGAAA
* **
10214704 ACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGGTGAACTTTCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10214764 CTTTCACGAG
Statistics
Matches: 345, Mismatches: 46, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
339 43 0.12
340 294 0.85
341 8 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (339 bp):
ACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTT
ATTTACATAAGAACTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTACGATT
TCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTTCGAAC
ATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGTTTCGG
CCGTTAAATTGAAA
Found at i:10214458 original size:62 final size:62
Alignment explanation
Indices: 10214391--10214548 Score: 208
Period size: 62 Copynumber: 2.5 Consensus size: 62
10214381 TTGGTTCTCC
* * * * *
10214391 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
* * * * * *
10214453 CTTGGTTCTTGGATTAACTTCCGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
*
10214515 CTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
10214549 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
Found at i:10214881 original size:214 final size:216
Alignment explanation
Indices: 10214485--10214978 Score: 545
Period size: 215 Copynumber: 2.3 Consensus size: 216
10214475 GAACTTGTTA
*
10214485 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
* * * * * * *
10214550 TTTTACGATTTCTTTTATAATTTCAGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGTAAATCCAATCCTTCTAGAAA
** * * * *
10214615 TTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 AATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
10214680 CAAGTTTTGGCCGTTAAATTG
196 CAAGTTTTGGCCGTTAAATTG
* * * * *
10214701 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGGTGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
** **
10214765 TTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAATCATCCAAG-AAGATCCAATCCTT-T-GA
66 TTTCACGAGTTCTTTTATAACTTCA-GTTCCAAAAAGAATCCAAGTAA-ATCCAATCCTTCTAGA
*
10214826 ACAAATTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 A-AAATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
**
10214890 TAAACAAGTTTTGGAATGTT-AATT-
192 TAAACAAGTTTTGG-CCGTTAAATTG
* * * * * * * * * * *
10214914 AATTACTTAGTTACGTGAGAAATGTTTCTCTCTTAGTTCTAGGACGAACTTCCAAATTTGTCAAA
1 AA-AACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
10214979 ACTTATTTAC
Statistics
Matches: 233, Mismatches: 38, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
213 7 0.03
214 96 0.41
215 103 0.44
216 27 0.12
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGTAAATCCAATCCTTCTAGAAA
AATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCGTTAAATTG
Found at i:10215069 original size:62 final size:62
Alignment explanation
Indices: 10214918--10215281 Score: 507
Period size: 62 Copynumber: 5.9 Consensus size: 62
10214908 TTAATTAATT
* * * * *
10214918 ACTTAGTTACGTGAGAAATGTTTCTCTCTTAGTTCTAGGACGAACTTCCAAATTTGTC-AAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* *
10214979 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* *
10215041 ACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAACGTCCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* ** *
10215103 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACCACCGAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* *
10215165 ACTTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AAA
1 AC-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* * * ** * *
10215227 ACTTATTTACGTGAGAATTGTTTTTCCCTTGGATCTTTTACGAACATCCGAACTT
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10215282 CTGAAACTTT
Statistics
Matches: 277, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
61 99 0.36
62 125 0.45
63 53 0.19
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
Found at i:10215607 original size:63 final size:62
Alignment explanation
Indices: 10215439--10215628 Score: 229
Period size: 63 Copynumber: 3.0 Consensus size: 62
10215429 CCTTTAAATT
* * *
10215439 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC-
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
* * * * * *
10215501 AAAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
* * * *
10215564 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCA
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
10215627 AA
1 AA
10215629 CATTTACTAT
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
62 51 0.48
63 55 0.52
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCA
Found at i:10215735 original size:341 final size:340
Alignment explanation
Indices: 10215099--10215881 Score: 1076
Period size: 341 Copynumber: 2.3 Consensus size: 340
10215089 CAAACTTGTC
*
10215099 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACCACCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAA-CATCGAACTTGTCAAA
*
10215164 AACTTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAC
65 AAC-TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAC
* * * ** * * *
10215229 TTATTTACGTGAGAATTGTTTTTCCCTTGGATCTTTTACGAACATCCGAACTTCTGAAACTTTTA
129 TTATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCAAACTTCTCAAACATTTA
* * *
10215294 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAATTTT
194 CGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGACCAAATTTT
* ** * *
10215359 CTAACATCCTATGCTCGGCAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTTGCAAACAAG
259 CGAACATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTTGAAAACAAG
10215423 TTTTGGCCTTTAAATT-
324 TTTTGGCCTTTAAATTA
* *
10215439 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGA-TGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACT-AAC-ATCGAACTTGTCA
* * * * * * *
10215502 AAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAA
63 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--AA
* * *
10215567 AACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACAT
126 AACTTATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCAAACTTCTCAAACAT
* * * * *
10215632 TTACTATTTCTTTTTATAACTTCGGTTCC-AAAAGTATTCAAGTTAATCCATTCCTTCTA-GAAA
191 TTACGATTTC-TTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGACCAAA
*
10215695 GTTTTCGAACATTCC-ATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTTGAA
255 -TTTTCGAACA-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTTGAA
10215759 AACAAGTTTTGGCCTTTAAATTA
318 AACAAGTTTTGGCCTTTAAATTA
*
10215782 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC-GAACTTGTCAAA
*
10215847 AACTTATTTACTTGAGAATTGTTTCTCTCTTGGTT
65 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTT
10215882 NNNNNNNNNN
Statistics
Matches: 385, Mismatches: 45, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
339 52 0.14
340 61 0.16
341 134 0.35
342 52 0.14
343 84 0.22
344 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCGAACTTGTCAAAA
ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAACTT
ATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCAAACTTCTCAAACATTTACG
ATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGACCAAATTTTCG
AACATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTTGAAAACAAGTT
TTGGCCTTTAAATTA
Found at i:10216264 original size:61 final size:60
Alignment explanation
Indices: 10216140--10216274 Score: 164
Period size: 61 Copynumber: 2.2 Consensus size: 60
10216130 CGCATAATTT
* * *
10216140 CGAACTTGTCAAAAACTTATTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTC
1 CGAACTTGTCAAAAAATTATTACATAAGAATTGTTTCTCACTTGGTTCTTGGACAAAG-TC
* * * * *
10216201 CGAACATGTCAAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGACA-TC
1 CGAACTTGTCAAAAAATTA-TTACATAAGAATTGTTTCTCACTTGGTTCTTGGA-CAAAGTC
10216262 CGAACTTGTCAAA
1 CGAACTTGTCAAA
10216275 CTTTTACGAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
61 31 0.49
62 30 0.48
63 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (60 bp):
CGAACTTGTCAAAAAATTATTACATAAGAATTGTTTCTCACTTGGTTCTTGGACAAAGTC
Found at i:10216550 original size:60 final size:59
Alignment explanation
Indices: 10216424--10216608 Score: 246
Period size: 60 Copynumber: 3.1 Consensus size: 59
10216414 ACTGTTGAAT
* *
10216424 AAAAACTTATTTATGTGAGAATGGTTTCTCTTATTGGTTCTTGGATGAA-TTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAAT-GTTTCTC-TCTTGGTTCTTGGA-GAACTTCAAACTTGTC
* *
10216485 AAAAACTTATTTACATGAGAACTGTTTCTCTCTTGGTTCTTGGAGAACTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAA-TGTTTCTCTCTTGGTTCTTGGAGAACTTCAAACTTGTC
* * *
10216545 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAA-TGTTTCTCTCTTGGTTCTTGGAGAAC-TTCAAACTTGTC
10216606 AAA
1 AAA
10216609 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
59 3 0.03
60 68 0.61
61 39 0.35
62 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (59 bp):
AAAAACTTATTTACGTGAGAATGTTTCTCTCTTGGTTCTTGGAGAACTTCAAACTTGTC
Found at i:10216847 original size:62 final size:62
Alignment explanation
Indices: 10216757--10216882 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10216747 CTTTCAAATT
* * * * *
10216757 AAAACTTATTTATGGAGAATTGTGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCA
1 AAAACTTATTTACGAAGAATTGTGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCA
*
10216819 AAAACTTATTTACGTAAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCA
1 AAAACTTATTTACG-AAGAATTGTGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCA
10216881 AA
1 AA
10216883 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
62 49 0.86
63 8 0.14
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACGAAGAATTGTGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCA
Found at i:10217202 original size:215 final size:217
Alignment explanation
Indices: 10216818--10217316 Score: 634
Period size: 215 Copynumber: 2.3 Consensus size: 217
10216808 CGAACTTGTC
* * * *
10216818 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
10216883 CTTTTAGGATTTCTTTTATAACTTCGTTTTTCCAAAAAGTATTCATGATAATCCATTCCTTCTAG
66 CTTTCACGAGTTCTTTTATAACTTAG-TGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAG
* * *
10216948 AAATTTTTTGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTTGA
130 AAATTTTCTAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTTGA
*
10217013 AAACAAGTTTTGGTCT-TTAAATT
195 AAACAAGTTTTGGACTCTT-AATT
* * * * *
10217036 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
10217100 CTTTCACGAGTTCTTTTATAACTTAG-GTTCCTTAAAGTATTCAAGACGATCTATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGTGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
10217163 CAAA-TTTCTAAACATTCCATGCTC-GAGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
130 -AAATTTTCTAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
* *
10217225 TGTAAATAAGTTTTGGACTCTTAATT
192 TGAAAACAAGTTTTGGACTCTTAATT
* *
10217251 AAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10217316 A
65 A
10217317 GAATTATTTA
Statistics
Matches: 241, Mismatches: 33, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
214 4 0.02
215 101 0.42
216 28 0.12
217 81 0.34
218 27 0.11
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGTGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
AATTTTCTAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTTGAA
AACAAGTTTTGGACTCTTAATT
Found at i:10217359 original size:62 final size:62
Alignment explanation
Indices: 10217255--10217502 Score: 347
Period size: 62 Copynumber: 4.0 Consensus size: 62
10217245 TTAATTAAAT
* * *
10217255 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10217317 GAA-TTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 -AACTTATTTACATGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10217379 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10217441 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10217503 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
61 3 0.02
62 160 0.96
63 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10217895 original size:276 final size:276
Alignment explanation
Indices: 10217376--10217987 Score: 668
Period size: 276 Copynumber: 2.2 Consensus size: 276
10217366 CAAACTTGTC
* * *
10217376 AAAAACTTATTTACGTGAG-AATTAT-TTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCA
1 AAAAACTTATTTACGTG-GCAATT-TGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCA
* * * *
10217439 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAAC
64 AAAACTCATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAAC
* ** * * *
10217504 TTTTACGATTCCTTTATGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
129 TTTTACGATTCCTTTATACTTCGGTTCTCAAAAGTATTCAAGATAATCCATTCTTCTGAGAAATT
* * * ** * **
10217569 TTTTGAGCATTCCATGCTCGGGAAATCGCATAATTTGGCCTAAGTAGTTTGTTTTTTTGTAAACA
194 TTTTGAGAAATCCACGCTCGAAAAATCCCATAATTTGGCCTAAGTAGTTTGTCATTTTGTAAACA
*
10217634 AGTTTCGATCCTTGAATT
259 AGTTTCGATCCTTAAATT
* *
10217652 AATAACTTTTTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
* * * * * *
10217717 GAA-TCATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAACT
66 -AACTCATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
* * * *
10217781 TTTACGATATCTTTTATAACTTCGGTTC-CAAAAGTATTTAAGTTAATCCTTTCCTTCT-AGAAA
130 TTTACGAT-TCCTTTAT-ACTTCGGTTCTCAAAAGTATTCAAGATAATCCATT-CTTCTGAGAAA
* * *
10217844 TTTTTTGA-AAATCCACGCTCGAAAAATCCCATCATTTTGTCTCAA-TAGTTTGTCATTTTGTAA
192 TTTTTTGAGAAATCCACGCTCGAAAAATCCCATAATTTGGCCT-AAGTAGTTTGTCATTTTGTAA
* * *
10217907 ACAAGTTTTGGTCTTTAAATT
256 ACAAGTTTCGATCCTTAAATT
* * ** *
10217928 AAAAACTTATTTACGT-ACTAA-TTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAATTTGT
1 AAAAACTTATTTACGTGGC-AATTTGT-TCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGT
10217988 TAAACTTTCA
Statistics
Matches: 280, Mismatches: 47, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
275 33 0.12
276 193 0.69
277 41 0.15
278 13 0.05
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (276 bp):
AAAAACTTATTTACGTGGCAATTTGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
AACTCATTTACATAAGAACTGTTTCACTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTCCTTTATACTTCGGTTCTCAAAAGTATTCAAGATAATCCATTCTTCTGAGAAATTTT
TTGAGAAATCCACGCTCGAAAAATCCCATAATTTGGCCTAAGTAGTTTGTCATTTTGTAAACAAG
TTTCGATCCTTAAATT
Found at i:10218243 original size:62 final size:62
Alignment explanation
Indices: 10218145--10218332 Score: 313
Period size: 62 Copynumber: 3.0 Consensus size: 62
10218135 GTTAATTAAT
* *
10218145 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10218207 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC--AAA
* * *
10218271 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10218333 TTTTTATGGT
Statistics
Matches: 119, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
62 60 0.50
64 59 0.50
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10218274 original size:892 final size:891
Alignment explanation
Indices: 10216424--10218332 Score: 2688
Period size: 892 Copynumber: 2.1 Consensus size: 891
10216414 ACTGTTGAAT
* * * *
10216424 AAAAACTTATTTATGTGAGAATGGTTTCTCTTATTGGTTCTTGGATGAA-TT-CAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * *
10216487 AAACTTATTTACATGAGAACTGTTTCTCTCTTGGTTCTTGGAGAAC-TTCGAACTTGTCAAAAAC
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAACATCCGAACTTGTCAAAAAC
10216551 TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAGAACATCCAAACTTGTCAAACTTTTAC
130 TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAGAACATCCAAACTTGTCAAACTTTTAC
* *
10216616 GATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAACCCATACTGCTAGAAATTCTTCA
195 GATTTCCTTTATAACTTCGATTCCAAAAAGTATTCAAGATAACCCATACTGCTAGAAATTCTTCA
** * * *
10216681 AACATTCCATGCTCGGAAAATCCATCGTTTGGTCAACTAGTTTGTCATTTTGTTAAACCAGTTGG
260 AACATTCCATGCTCGGAAAATCCATAATTTGGCCAACTAGTTTGTCATTTTGTTAAACAAGTTGA
* * *
10216746 TCTTTCAAATTAAAACTTATTTATGGAGAATTGTGTTCTCTCTTGATTCTTGGACGAACTTTCGA
325 TCCTTCAAATTAAAACTTATTTATGGACAATTGTGTTCTCTCTTGATTCTTGGACAAACTTTCGA
* * * *
10216811 ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACT
390 ACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACT
* * * *
10216876 TGTCAAACTTTTAGGATTTCTTTTATAACTTCGTTTTTCCAAAAAGTATTCATGATAATCCATTC
455 TGTCAAACTTTTACGATATCTTTTATAACTTCG-TGTTCCAAAAAGTATTCAAGATAATCCATTC
* * *
10216941 CTTCTAGAAATTTTTTGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTC
519 CTTCTAGAAATTTTTTGAACAATCCACGCTCAGAAAATCCCATCATTTGGTCTAAATAGTTTGTC
*
10217006 ATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAAGTTATTTACGTGAGAATTGTATCTCCTAGG
584 ATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTAGG
*
10217071 TTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
649 TTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCCTTAAA
* *
10217136 GTATTCAAGACGATCTATTCCTTTGAGCAAATTTCTAAACATTCCATGCTCGAGAAATCACATCA
714 GTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCA
*
10217201 TTTGGTCAAAATAGTTTGTCATTTTGTAAATAAGTTTTGGACTCTTAATTAAATAACTTAGTTAC
779 TTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAACTTAGTTAC
* * *
10217266 ATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
844 ATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10217314 AAAGAA-TTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 AAA-AACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
*
10217377 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAA
64 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TAACATCCGAACTTGTCAAAA
*
10217442 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGC-TCTTGGACGAACATCCGAACTTGTCAAACTT
128 ACTTATTTACGTAAGAATTGTTTCTCTCTT-GCTTCTTGGA-GAACATCCAAACTTGTCAAACTT
* * *** * * * ** *
10217506 TTACGA-TTCCTTTAT-GCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
191 TTACGATTTCCTTTATAACTTCGATTCCAAAAAGTATTCAAGATAACCCATACTGCT-AGAAATT
* ** * * * **
10217569 TTTTGAGCATTCCATGCTCGGGAAATCGCATAATTTGGCCTAAGTAGTTTGTTTTTTTG-TAAAC
255 CTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGGCC-AACTAGTTTGTCATTTTGTTAAAC
* * *
10217633 AAGTTTCGATCCTT-GAATTAATAACTTTTTTACGTGG-CAATT-TGTTCTCTCTTGGTTCTTGG
318 AAG-TT-GATCCTTCAAATTAA-AACTTATTTA--TGGACAATTGTGTTCTCTCTTGATTCTTGG
* * *
10217695 ACAAACTTTCGAACTTGTCAAAGAA-TCATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGAC
378 ACAAACTTTCGAACTTGTCAAA-AACTCATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGAC
* * * *
10217759 GAACTTTCGAACTTGTCAAACTTTTACGATATCTTTTATAACTTCG-GTTCC-AAAAGTATTTAA
442 GAACATCCAAACTTGTCAAACTTTTACGATATCTTTTATAACTTCGTGTTCCAAAAAGTATTCAA
* * *
10217822 GTTAATCCTTTCCTTCTAGAAATTTTTTGAA-AATCCACGCTC-GAAAAATCCCATCATTTTGTC
507 GATAATCCATTCCTTCTAGAAATTTTTTGAACAATCCACGCTCAG-AAAATCCCATCATTTGGTC
* * *
10217885 TCAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGT-ACTAA
571 TAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGA-GAA
* * * * *
10217949 TTGTATCTCCTTGGTTGTTGGATGAACTTTCGAATTTGTTAAACTTTCACAAGTTCTTTTATAAC
635 TTGTATCTCCTAGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAAC
* **
10218014 TTAGGTTCCTTACAGTATTCAAGACGATCCATTCCTTTGATTAAATTTCCAAACATTCCATGCTC
700 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTC
*
10218079 GAGAAATCACATCATTTGGTCAAAATAG-TTGTCATTTTGTAAACAAGTTTTGGACTGTTAATT-
765 GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTA
*
10218142 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
830 AATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
10218204 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC--A
* *
10218269 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTGTCAAA
64 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT-AACATCCGAACTTGTCAAA
10218333 TTTTTATGGT
Statistics
Matches: 902, Mismatches: 93, Indels: 46
0.87 0.09 0.04
Matches are distributed among these distances:
889 19 0.02
890 134 0.15
891 90 0.10
892 323 0.36
893 127 0.14
894 50 0.06
895 23 0.03
896 127 0.14
897 6 0.01
898 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (891 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAACATCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGAGAACATCCAAACTTGTCAAACTTTTACG
ATTTCCTTTATAACTTCGATTCCAAAAAGTATTCAAGATAACCCATACTGCTAGAAATTCTTCAA
ACATTCCATGCTCGGAAAATCCATAATTTGGCCAACTAGTTTGTCATTTTGTTAAACAAGTTGAT
CCTTCAAATTAAAACTTATTTATGGACAATTGTGTTCTCTCTTGATTCTTGGACAAACTTTCGAA
CTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTT
GTCAAACTTTTACGATATCTTTTATAACTTCGTGTTCCAAAAAGTATTCAAGATAATCCATTCCT
TCTAGAAATTTTTTGAACAATCCACGCTCAGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
TTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTAGGTT
CTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCCTTAAAGT
ATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
TGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAACTTAGTTACAT
GAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10218283 original size:64 final size:64
Alignment explanation
Indices: 10218145--10218332 Score: 317
Period size: 64 Copynumber: 3.0 Consensus size: 64
10218135 GTTAATTAAT
* *
10218145 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC--AAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
10218207 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* * *
10218271 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10218333 TTTTTATGGT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
62 57 0.48
64 62 0.52
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (64 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
Found at i:10218741 original size:284 final size:278
Alignment explanation
Indices: 10218204--10218893 Score: 989
Period size: 284 Copynumber: 2.5 Consensus size: 278
10218194 CAAACTTGTC
* * *
10218204 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC---
* * *
10218269 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATG-A-ACATCCAAACTTGTCAA
63 AAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAA
*
10218332 ATTTTTATGGTTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGC
128 ACTTTTATGGTTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGC
* *
10218397 AATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTCTTTTTGTA
193 AATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCGTC-TTTTGTA
* *
10218462 AACAAGTTTTGGCCCCTGAATT
257 AACAAGTTTCGACCCCTGAATT
* *
10218484 AAAAACTTAATTACGTGAGAATTGGCTCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGG-T-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
*
10218549 AAACTTATTTACATGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACAGTTCATCCAAACTTGTC
64 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACA---CATCCAAACTTGTC
10218614 AAACTTTTATGAG-TTCTTTTATAACTTC-AGTTCCTGAAAGTATTCAAGATGATCCATTCTTTC
126 AAACTTTTATG-GTTTCTTTTATAACTTCGA-TTCCTGAAAGTATTCAAGATGATCCATTCTTTC
* *
10218677 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTCGTCTTTT
189 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCGTCTTTT
* *
10218742 GTAAACAAGTTTCGATCCTTGAATT
254 GTAAACAAGTTTCGACCCCTGAATT
* *
10218767 AAAAACTTATTTACGTG-GCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10218831 AGTCTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACG-A-ACTTCCGAACTTGTCAAA
65 A-ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAAA
10218894 AACTTATTTA
Statistics
Matches: 371, Mismatches: 28, Indels: 25
0.88 0.07 0.06
Matches are distributed among these distances:
277 15 0.04
279 41 0.11
280 25 0.07
281 39 0.11
282 73 0.20
283 48 0.13
284 129 0.35
285 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAAACT
TTTATGGTTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT
TTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCGTCTTTTGTAAACA
AGTTTCGACCCCTGAATT
Found at i:10218954 original size:61 final size:60
Alignment explanation
Indices: 10218767--10218954 Score: 220
Period size: 62 Copynumber: 3.0 Consensus size: 60
10218757 TCCTTGAATT
* *
10218767 AAAAACTTATTTACGTGGCAATTGGTTCT-ATCTTTGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAG-AATT-GTTCTCATC-TTGTTCTTGGACGAACTTCCGAACTTGTC
** * *
10218829 AAAGTCTTATTTACATGAGTATTGTT-TCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTCTCA-TCTT-GTTCTTGGACGAACTTCCGAACTTGTC
*
10218891 AAAAACTTATTTACGTAAGAATTGTTCTCA-CTTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTCTCATCTTG-TTCTTGGACGAACTTCCGAACTTGTC
10218952 AAA
1 AAA
10218955 CTTTTACGAT
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
60 2 0.02
61 37 0.34
62 65 0.60
63 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACGTAGAATTGTTCTCATCTTGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10219179 original size:339 final size:341
Alignment explanation
Indices: 10218515--10219232 Score: 934
Period size: 339 Copynumber: 2.1 Consensus size: 341
10218505 TTGGCTCTCT
* * * * *
10218515 CTCTTGGCTCTTGGACGAACTTTCGAACTTGTC-AAAACTTATTTACATGAGTATTGTTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
* *
10218579 TTGCTTCTTGGATGAACAGTTCATCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAG
66 TTGCTTCTTGGACGAACA--TCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG
** * * * * * **
10218644 TTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAA
129 TTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCGAAAA
*
10218709 ATCGCATAATTTGATCTAAATAGTTCGTCTTTTGTAAACAAGTTTCGATCCTTGAATTAAAAACT
194 ATCCCATAATTTGATCTAAATAGTTCGTCTTTTGTAAACAAGTTTCGA-CCTTGAATTAAAAACT
* * *
10218774 TATTTACGTGGCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAGTCTTAT
258 TAGTTACGTGGCAATTGGTTCTATCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGTCTTAT
*
10218839 TTACATGAGTATTGTTTCA
323 TTACATGAGAATTGTTTCA
*
10218858 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTG-TTCTCAC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
* * *
10218922 TTGCTTCTTGGACG-A-A-CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATGACTTC-GTT
66 TTGCTTCTTGGACGAACATCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
*
10218983 CCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGAAAAAA
131 CCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCG-AAAAA
* * * * * *
10219048 TCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGA-CTATTAATTAATAAC
195 TCCCATAATTTGATCTAAATAGTTCGTC-TTTTGTAAACAAG-TTTCGACCT-TGAATTAAAAAC
* * *
10219112 TTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTGTTGGACGAAC-TTCTAAACTTGTCAAAAG-C
257 TTAGTTACGTG-GCAATTGGTTCTATCTTAGTTCTTGGACGAACTTTC-AAACTTGTC-AAAGTC
* *
10219174 TTATTTACGTGAGAATTGTTTCT
319 TTATTTACATGAGAATTGTTTCA
*
10219197 CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10219233 CTTTTACGAT
Statistics
Matches: 329, Mismatches: 38, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
337 54 0.16
338 70 0.21
339 123 0.37
340 10 0.03
341 1 0.00
342 1 0.00
343 50 0.15
344 20 0.06
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (341 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
TTGCTTCTTGGACGAACATCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
CCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCGAAAAAT
CCCATAATTTGATCTAAATAGTTCGTCTTTTGTAAACAAGTTTCGACCTTGAATTAAAAACTTAG
TTACGTGGCAATTGGTTCTATCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGTCTTATTTA
CATGAGAATTGTTTCA
Found at i:10219213 original size:62 final size:62
Alignment explanation
Indices: 10219111--10219232 Score: 208
Period size: 62 Copynumber: 2.0 Consensus size: 62
10219101 TAATTAATAA
* *
10219111 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGACGAACTTCTAAACTTGTCAAAAG
1 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAG
* *
10219173 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10219233 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (62 bp):
CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAG
Found at i:10219235 original size:625 final size:619
Alignment explanation
Indices: 10217929--10219446 Score: 1775
Period size: 625 Copynumber: 2.5 Consensus size: 619
10217919 CTTTAAATTA
* * * * * * * * * *
10217929 AAAACTTATTTACGT-ACTAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAATTTGTTAAA
1 AAAACTTATTTACATGA-GAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCAAACTTGTCAAA
* * * * * *
10217992 CTTTCACAAGTTCTTTTATAACTT-AGGTTCCTTACAGTATTCAAGACGATCCATTCCTTT-GAT
65 CTTTTACGAGTTCTTTTATAACTTCA-GTTCCTAAAAGTATTCAAGATGATCCATTACTTTCGA-
* * * *
10218055 TAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTGTCATTTTGT
128 GAAATTTTTCAAACATTCCATGCTCGGGAAATC-CATCATTTGGTCTAAATAGTTGTCATTTTGT
* * * * *
10218119 AAACAAGTTTTGGA--CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCT
192 AAACAAGTTTTCGATCCT-TCAATTAAAAACTTATTTACGTGAGAATTGGTTCT-TCTTAGTTCT
* * * *
10218182 TGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
255 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTGG
* * *
10218247 ACGAACTTCCAAACTTGTCAAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGA
320 ACGAACTTCCAAACTTGTC-AAAAAACTTATTTACGTAAGAATTGTTTCTCACTTGCTACTTGGA
* * * * ** *
10218312 TGAACATCCAAACTTGTCAAATTTTTATGGTTTCTTTTATAACTTCGATTCCTGAAAGTATTCAA
384 CGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATTCAA
* * * * **
10218377 GATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCT
449 GATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCGAAAAATCACATAATTTGATCT
* * * *
10218442 GAATAATTTGTCTTTTTGTAAACAAGTTTTGGCCCCTGAATTAAAAACTTAATTACGTGAGAATT
514 AAATAATTTGTCATTTTGTAAACAAGTTTTGGACCATGAATTAAAAACTTAATTACGTGAGAATT
* *
10218507 GGCTCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
579 GGCTCTCTCTCTTAGCTCTTGGACGAACTTTCAAACTTGTC
* *
10218548 AAAACTTATTTACATGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACAGTTCATCCAAACTTGT
1 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACA--T--T-CAAACTTGT
* *
10218613 CAAACTTTTATGAGTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTC
61 CAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATGATCCATTACTTTC
* * * *
10218677 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTCGTC-TTT
126 GAGAAATTTTTCAAACATTCCATGCTCGGGAAATC-CATCATTTGGTCTAAATAGTT-GTCATTT
* *
10218741 TGTAAACAAG-TTTCGATCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTATCTTTGT
189 TGTAAACAAGTTTTCGATCCTTCAATTAAAAACTTATTTACGTGAG-AATTGGTTCT-TCTTAGT
** *
10218804 TCTTGGACGAACTTTCGAACTTGTCAAAGTCTTATTTACATGAGTATTGTTTCACTCTTGGTTCT
252 TCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCT
* *
10218869 TGGACGAACTTCCGAACTTGTC-AAAAACTTATTTACGTAAGAATTG-TTCTCACTTGCTTCTTG
317 TGGACGAACTTCCAAACTTGTCAAAAAACTTATTTACGTAAGAATTGTTTCTCACTTGCTACTTG
* *
10218932 GACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATGACTTCG-TTCCAAAAAGCATTC
382 GACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATTC
* * * *
10218996 AAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGAAAAAATCCCATCATTTGG
447 AAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCATACTCG-AAAAATCACATAATTTGA
* * * * *
10219061 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGA
511 TCTAAATAATTTGTCATTTTGTAAACAAGTTTTGGACCATGAATTAAAAACTTAATTACGTGAGA
* * *
10219126 ATT-G-TTTCTCTCTTAGTTGTTGGACGAAC-TTCTAAACTTGTC
576 ATTGGCTCTCTCTCTTAGCTCTTGGACGAACTTTC-AAACTTGTC
* *
10219168 AAAAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAA
1 AAAA-CTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATT-CAAACTTGTCAA
* * * * *
10219232 ACTTTTACGATTTCTTTTATAACTTC-GATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTA
64 ACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTAAAAGTATTCAAGATGATCCATTACTTTCGA
* * *
10219295 GAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTGTAACTAGTTTGTCATTTTGT
128 GAAATTTTTCAAACATTCCATGCTCGGGAAATCCATCATTTGGTCTAAATAG-TTGTCATTTTGT
* * * * * * * *
10219360 ATACCAGTTTTTG-TCTTTCAATTAAAAACTTATTCACGTGAGAATT-GTATCTCCTTGGTTGTT
192 AAACAAGTTTTCGATCCTTCAATTAAAAACTTATTTACGTGAGAATTGGT-TCTTCTTAGTTCTT
* *
10219423 GGATGAACTTTCGAGCTTGTCAAA
256 GGACGAACTTTCGAACTTGTCAAA
10219447 CTCTCACGAG
Statistics
Matches: 769, Mismatches: 106, Indels: 52
0.83 0.11 0.06
Matches are distributed among these distances:
615 51 0.07
616 140 0.18
617 6 0.01
618 1 0.00
619 26 0.03
620 50 0.07
621 94 0.12
622 130 0.17
623 23 0.03
624 13 0.02
625 229 0.30
626 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (619 bp):
AAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATTCAAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATGATCCATTACTTTCGAGAA
ATTTTTCAAACATTCCATGCTCGGGAAATCCATCATTTGGTCTAAATAGTTGTCATTTTGTAAAC
AAGTTTTCGATCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCTTCTTAGTTCTTGGACG
AACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAAACTTATTTACGTAAGAATTGTTTCTCACTTGCTACTTGGACGAACAT
CCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATTCAAGATAATC
CATTCCTTCGAGAAATTTTTCGAACATTCCATACTCGAAAAATCACATAATTTGATCTAAATAAT
TTGTCATTTTGTAAACAAGTTTTGGACCATGAATTAAAAACTTAATTACGTGAGAATTGGCTCTC
TCTCTTAGCTCTTGGACGAACTTTCAAACTTGTC
Found at i:10219350 original size:277 final size:276
Alignment explanation
Indices: 10218834--10219446 Score: 856
Period size: 277 Copynumber: 2.2 Consensus size: 276
10218824 TTGTCAAAGT
* * * * *
10218834 CTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTT
1 CTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAAAACTT
*
10218899 ATTTACGTAAGAATTGTTCTCACTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
65 ATTTACGTAAGAATTGTTCTCACTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGA
* * *
10218964 TTTCTTTTATGACTTCGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAA
130 TTTCTTTTATAACTTCGTTCCAAAAAGCATTCAAGATAATCCATTACTTCTAGAAATTTTTCAAA
10219029 CATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
195 CATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
*
10219094 GGACTATT-AATTAATAA
260 GGACT-TTCAATTAAAAA
* * *
10219111 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGACGAACTTCTAAACTTGTCAAAAGCTT
1 CTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAAAACTT
* * * *
10219176 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACG
65 ATTTACGTAAGAATTG-TTCTCACTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACG
* *
10219241 ATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAATTTTTCA
129 ATTTCTTTTATAACTTCG-TTCCAAAAAGCATTCAAGATAATCCATTACTTCTAGAAATTTTTCA
* * * * * *
10219306 AACATTCCATGCTCG-GAAAAT-CCATCATTTGGTGTAACTAGTTTGTCATTTTGTATACCAGTT
193 AACATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
10219369 TTTGTCTTTCAATTAAAAA
258 TTGGACTTTCAATTAAAAA
* * * * *
10219388 CTTATTCACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAA
1 CTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAA
10219447 CTCTCACGAG
Statistics
Matches: 297, Mismatches: 35, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
276 32 0.11
277 143 0.48
278 66 0.22
279 56 0.19
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (276 bp):
CTTATTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTAAGAATTGTTCTCACTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGAT
TTCTTTTATAACTTCGTTCCAAAAAGCATTCAAGATAATCCATTACTTCTAGAAATTTTTCAAAC
ATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
GACTTTCAATTAAAAA
Found at i:10219830 original size:492 final size:491
Alignment explanation
Indices: 10218891--10219938 Score: 1405
Period size: 492 Copynumber: 2.1 Consensus size: 491
10218881 CGAACTTGTC
* * * *
10218891 AAAAACTTATTTACGTAAGAATTGTTCTCACTTGCTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * * * *
10218956 TTTTACGATTTCTTTTATGACTTCGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAAT
65 TCTCACGAGTTCTTTTATAACTTCGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAAT
* * * *
10219021 TTTTCGAACATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 TTTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAAA
* *
10219086 CAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGAC
195 CAAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGAC
* * * *
10219151 GAACTTCTAAACTTGTCAAAAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
260 GAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * *
10219216 CTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTA
325 CATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATA
* * *
10219281 ATCCATTACTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTGTAACTA
390 ATCCATTACTTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATA
* * ** *
10219346 GTTTGTCA-TTTTGTATACCAGTTTTTGTCTTTCAATT
455 GTTTGT-ATTTTTGTAAACAAGTTTCGGTCCTTCAATT
* * * *
10219383 AAAAACTTATTCACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGT-TCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* ** *
10219448 TCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTT-TGAGCA
65 TCTCACGAGTTCTTTTATAACTT-CGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCT-AG-A
* * *
10219512 AA-TTTCCAAACATTCCATGCTCG-AGAAATCACATCATTTGGTC-AAAGTGGTTTGTCATTTTG
127 AATTTTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAA-TAGTTTGTCATTTTG
*
10219574 AAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTT
191 AAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTT
* *
10219639 GGACGAGCTTCCAAACTTGTCAAAAACTTGTTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA
256 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA
**
10219704 CGAACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTGAAAGTATTCA
321 CGAACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCAAAAAGTATTCA
* * ** * *
10219768 AGATGATCCATT-CTTTCGAGCAATTTTTTGAATATTCCATGCTCGGGAAATCGCAT-ATTTGGT
385 AGATAATCCATTAC-TTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATC-CATCATTTGGT
*
10219831 CTAAATAGTTTGTATTTTTGTAAACAAGTTTCGGTCCTTGAATT
448 CTAAATAGTTTGTATTTTTGTAAACAAGTTTCGGTCCTTCAATT
* *
10219875 -AAAACTTATTTACGTG-GCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCT-CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10219938 A
63 A
10219939 GTCTTATTTA
Statistics
Matches: 484, Mismatches: 60, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
490 1 0.00
491 28 0.06
492 397 0.82
493 55 0.11
494 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (491 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
CTCACGAGTTCTTTTATAACTTCGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAATT
TTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAAAC
AAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
ATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAA
TCCATTACTTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAG
TTTGTATTTTTGTAAACAAGTTTCGGTCCTTCAATT
Found at i:10219975 original size:62 final size:62
Alignment explanation
Indices: 10219904--10220062 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 62
10219894 ATTGGTTCTA
* * ** * *
10219904 TCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAGTCTTATTTACA-TGAGTACTGTTTCAC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTA-AGTAAGAACTGTTTCAC
* *
10219966 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAACTGTTTCAC
* * *
10220028 TCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10220063 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 1 0.01
62 84 0.99
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAACTGTTTCAC
Found at i:10220315 original size:62 final size:62
Alignment explanation
Indices: 10220217--10220340 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
10220207 GTTAATTAAT
10220217 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10220279 AACTTA-TTGACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTT-ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10220341 CTTTTACGAT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 2 0.03
62 58 0.97
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10220807 original size:62 final size:62
Alignment explanation
Indices: 10220709--10220832 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
10220699 GTTAATTAAT
* * *
10220709 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
* * *
10220771 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
10220833 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
Found at i:10221090 original size:62 final size:62
Alignment explanation
Indices: 10220993--10221149 Score: 206
Period size: 62 Copynumber: 2.5 Consensus size: 62
10220983 TACGTGAGAA
* * * * * * *
10220993 TTGGTTCTTGGATGAGCTTTCAAACTCGTCAAAAACTTATTTACATGAGTATTGTTTCTCTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTC
*
10221055 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTC
* * * *
10221117 TTGCTTCTTTGACGAACATCCGAGCTTGTCAAA
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10221150 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.39
Consensus pattern (62 bp):
TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTC
Found at i:10221758 original size:61 final size:62
Alignment explanation
Indices: 10221531--10221764 Score: 371
Period size: 62 Copynumber: 3.8 Consensus size: 62
10221521 TTAGTTACAA
* * * *
10221531 GAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGT
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
10221593 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
* * *
10221655 GAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTACTTACGT
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
* * *
10221717 AAGAATT-TTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10221765 CTTTTACAAT
Statistics
Matches: 162, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
61 39 0.24
62 123 0.76
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
Found at i:10222015 original size:62 final size:62
Alignment explanation
Indices: 10221943--10222102 Score: 232
Period size: 62 Copynumber: 2.6 Consensus size: 62
10221933 GCAATTGGTT
* * * *
10221943 CTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* * * *
10222005 CTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
10222067 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10222103 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
61 3 0.03
62 81 0.93
63 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
Found at i:10222075 original size:399 final size:401
Alignment explanation
Indices: 10221301--10222102 Score: 1007
Period size: 401 Copynumber: 2.0 Consensus size: 401
10221291 TCTTTCAATT
* * * ** * * *
10221301 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAACT
1 AAAACTTACTTACGTAAGAATTGTATCTCCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACT
* *
10221366 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
66 TTCACAAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
* *
10221431 TTTCCAAACATTCCACGCTTGAGAAATCACATCATTTGGTCAAAATAGTTAGTCATTTTGAAAAC
131 TTTCCAAACATTCCAAGCTTGAGAAATCACATAATTTGGTCAAAATAGTTAGTCATTTTGAAAAC
* *
10221496 AAGTATTGGACTGTAAATTAATAACTTAGTTACAAGAGAATTGTTTCTCTCTTAGTTCTTGGATG
196 AAGTATTGGACTGTAAATTAAAAACTTAGTTACAAGAGAATTGTGTCTCTCTTAGTTCTTGGATG
* * * *
10221561 AACTTCCAAACTTGTCACAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
261 AACTTCCAAACTTGTCACAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAAC
* *
10221626 ATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
326 ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
*
10221691 CTAACTTGTCA
391 CGAACTTGTCA
*
10221702 AAAACTTACTTACGTAAGAATT-TTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAC
1 AAAACTTACTTACGTAAGAATTGTATCTC-CTTGGTTCTTGGACAAACATCCGAACTTGTCAAAC
* * * * *
10221766 TTTTACAATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGCA
65 TTTCACAAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTT-GAGCA
* * * * * * *
10221830 ATTTTTCGAACATTCCAAGCTCTGGGAATTGCA-A-AATTTGGTCTAAATAGTTTGT-ATTTTTG
129 AATTTCCAAACATTCCAAGCT-TGAGAAAT-CACATAATTTGGTCAAAATAGTTAGTCA-TTTTG
* * * * ** *
10221892 TAAACAAGT-TTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTG-GT-TCTCTTGGTT
191 AAAACAAGTATT-GG-ACTGTAAATTAAAAACTTAGTTACAAGAG-AATTGTGTCTCTCTTAGTT
*
10221952 CTTGGATGAACATT-CAAACTTGTCA-AAGACTTATTTACATAAGTATTATTTCACTCTTGGTTC
253 CTTGGATGAAC-TTCCAAACTTGTCACAA-ACTTATTTACATAAGAATTATTTCACTCTTGGTTC
* ** *
10222015 TTGGACGAACTTCTGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
316 TTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
*
10222080 GACGAACATTCGAACTTGTCA
381 GACGAACATCCGAACTTGTCA
10222101 AA
1 AA
10222103 CTTTTACGAT
Statistics
Matches: 344, Mismatches: 47, Indels: 22
0.83 0.11 0.05
Matches are distributed among these distances:
398 2 0.01
399 141 0.41
400 16 0.05
401 174 0.51
402 9 0.03
403 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (401 bp):
AAAACTTACTTACGTAAGAATTGTATCTCCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACT
TTCACAAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
TTTCCAAACATTCCAAGCTTGAGAAATCACATAATTTGGTCAAAATAGTTAGTCATTTTGAAAAC
AAGTATTGGACTGTAAATTAAAAACTTAGTTACAAGAGAATTGTGTCTCTCTTAGTTCTTGGATG
AACTTCCAAACTTGTCACAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAAC
ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTGTCA
Found at i:10222230 original size:338 final size:337
Alignment explanation
Indices: 10221579--10222316 Score: 1099
Period size: 338 Copynumber: 2.2 Consensus size: 337
10221569 AACTTGTCAC
* * * *
10221579 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
1 AAACTTATTTACGTGAGAATTG-GTATCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAAA
* * * * *
10221644 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTT
65 CTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAAACTT
10221709 ACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACAA
130 ACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACAA
*
10221774 TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
195 TTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
10221839 ACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
260 ACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
*
10221904 GGTCCTTGAATTAA
325 GGTCCTTCAATT-A
*
10221918 AAACTTATTTACGTG-GCAATTGGT-TCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAGA
1 AAACTTATTTACGTGAG-AATTGGTATCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAAA
* * *
10221981 CTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAACT
65 CTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCT-AACTTGTCAAAAACT
* * *
10222045 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTTAC
129 TACTTACGTAAGAATT-TTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTAC
*
10222110 GATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
193 AATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
* * * * * *
10222175 GAACATTCCATGCTC-GGGAAATTGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAAACCAGT
258 GAACATTCCAAGCTCTGGG-AATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGT
* *
10222239 TTTGGTCTTTCAATTA
322 TTCGGTCCTTCAATTA
* * * *
10222255 AAACTTATTTACGTGAGAATT-GTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAA
1 AAACTTATTTACGTGAGAATTGGTATCT-CTTGGTTCTTGGATGAACATTCAAACTTGTCAAA
10222317 CTTTCACGAG
Statistics
Matches: 362, Mismatches: 30, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
336 5 0.01
337 129 0.36
338 208 0.57
339 20 0.06
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (337 bp):
AAACTTATTTACGTGAGAATTGGTATCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAAAC
TTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAAACTTA
CTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACAAT
TTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAA
CATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTCG
GTCCTTCAATTA
Found at i:10222456 original size:214 final size:215
Alignment explanation
Indices: 10222039--10222518 Score: 604
Period size: 214 Copynumber: 2.2 Consensus size: 215
10222029 GAACTTGTTA
* * *
10222039 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
* * * * *
10222104 TTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
* * * * * ** * ** * * * *
10222169 TTTTTCGAACATTCCATGCTCGGGAAATTGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAAA
131 ATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAA
* * * *
10222234 CCAGTTTTGGTCTTTCAATT
196 CAAGTTTTGGACTGTAAATT
* * *
10222254 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
* *
10222318 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGCA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATT-CTTTCGAGCA
*
10222382 AATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTAGTCAAAATAGTTAGTCATTTTGAAA
130 AATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAA
10222447 ACAAGTTTTGGACTGTAAATT
195 ACAAGTTTTGGACTGTAAATT
* * * *
10222468 AATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTT
1 AA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
10222519 CTAAACTTGT
Statistics
Matches: 224, Mismatches: 38, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
214 152 0.68
215 55 0.25
216 17 0.08
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
ATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAA
CAAGTTTTGGACTGTAAATT
Found at i:10222569 original size:62 final size:62
Alignment explanation
Indices: 10222471--10222718 Score: 302
Period size: 62 Copynumber: 4.0 Consensus size: 62
10222461 GTAAATTAAT
* * * * *
10222471 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
** * * *
10222533 AACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
*
10222595 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCT-AACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAAC-TTCTAAACTTGTCAAA
* * * * * **
10222657 AACTTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
10222719 TTTTTACGAT
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
61 1 0.01
62 157 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
Found at i:10222691 original size:124 final size:124
Alignment explanation
Indices: 10222471--10222718 Score: 356
Period size: 124 Copynumber: 2.0 Consensus size: 124
10222461 GTAAATTAAT
* *
10222471 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACAAAC
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTCCTAAACTTGTCAAAAAC
* ** *
10222536 TTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
66 TTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10222595 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCT-AACTTGTCAAAA
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGA-TGAAC-TCCTAAACTTGTCAAAA
* *
10222658 ACTTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
64 ACTTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10222719 TTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 106 0.96
125 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (124 bp):
AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTCCTAAACTTGTCAAAAAC
TTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10222971 original size:62 final size:62
Alignment explanation
Indices: 10222899--10223058 Score: 205
Period size: 62 Copynumber: 2.6 Consensus size: 62
10222889 AATTGGTTCT
* * * *
10222899 CTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* ** * *
10222961 CTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAACTTATTTATGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* *
10223023 CTCTTGGTTCTTGGACGAAGATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10223059 CTTTTACGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
61 3 0.04
62 79 0.94
63 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
Found at i:10223027 original size:402 final size:401
Alignment explanation
Indices: 10222254--10223058 Score: 987
Period size: 402 Copynumber: 2.0 Consensus size: 401
10222244 TCTTTCAATT
* * * * * * *
10222254 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAACT
1 AAAACTTACTTACGTAAGAATTGTATCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* *
10222319 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
66 TTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
*
10222384 TTTCCAAACATTCCACGCTCGAGAAATCACATCATTTAGTCAAAATAGTTAGTCATTTTGAAAAC
131 TTTCCAAACATTCCACGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAAC
* * *
10222449 AAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATG
196 AAGTTTAGGACTGTAAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTAGTTCTTCGATG
*** * * *
10222514 AACTTCTAAACTTGTCACAAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
261 AACTTCTAAACTTGTCACAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAAC
* *
10222579 ATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
326 ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
*
10222644 CTAACTTGTCA
391 CGAACTTGTCA
* * *
10222655 AAAACTTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAT
1 AAAACTTACTTACGTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * * *
10222720 TTTTACGATTTCTTTTATAACTCCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGCA
65 TTTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTT-GAGCA
* * * * * * * * *
10222784 ATTTTTCGAACATTCCATGCTCAGGGAATTGCA-A-AATTTGGTCTAAATAGTTTGT-ATTTTTG
129 AATTTCCAAACATTCCACGCTC-GAGAAAT-CACATAATTTAGTCAAAATAGTTAGTCA-TTTTG
* ** * * * *
10222846 TAAACAAGTTTCAGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTC
191 AAAACAAGTTT-AGGACTGTAAATTAAAAACTTAGTTACATGAG-AATTGGTTCTCTCTTAGTTC
* *
10222909 TTGGATGAACATTC-AAACTTGTCA-AAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCT
254 TTCGATGAAC-TTCTAAACTTGTCACAA-ACTTATTTACATAAGAATTATTTCACTCTTGGTTCT
* ** * *
10222972 TGGACGAACTTCTGAACTTGTTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGG
317 TGGACGAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
*
10223037 ACGAAGATCCGAACTTGTCA
382 ACGAACATCCGAACTTGTCA
10223057 AA
1 AA
10223059 CTTTTACGAT
Statistics
Matches: 341, Mismatches: 54, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
401 33 0.10
402 294 0.86
403 12 0.04
404 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAACTTACTTACGTAAGAATTGTATCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAGAATTCAAGACGATCCATTCCTTTGAGCAAA
TTTCCAAACATTCCACGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAAC
AAGTTTAGGACTGTAAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTAGTTCTTCGATG
AACTTCTAAACTTGTCACAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAAC
ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTGTCA
Found at i:10223187 original size:340 final size:339
Alignment explanation
Indices: 10222532--10223272 Score: 1044
Period size: 340 Copynumber: 2.2 Consensus size: 339
10222522 AACTTGTCAC
** * * *
10222532 AAACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
1 AAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAAA
* * * * *
10222597 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTT
66 CTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAAACTT
* *
10222662 ACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAATTTTTACG
131 ACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
*
10222727 ATTTCTTTTATAACTCCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
196 ATTTCTTTTATAACTCCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
* * ** *
10222792 AACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTT
261 AACAATCCATGCTCAGGGAAATGCAAAATTTCATCTAAATAGTTTGTAGTTTTGTAAACAAGTTT
*
10222857 CAGTCCTTGAATTAA
326 CAGTCCTTCAATT-A
*
10222872 AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAG
1 AAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAA
* * *
10222936 ACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAAC
65 ACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCT-AACTTGTCAAAAAC
* * *
10223000 TTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGATCCGAACTTGTCAAACTTTTA
129 TTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
*
10223065 CGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
194 CGATTTCTTTTATAACTCCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
* * * *
10223130 CGAACAATCCATGCTC-GGGAAAT-CACATAATTTCATCTTAATATTTTGTCGTTTTGTAAACCA
259 CGAACAATCCATGCTCAGGGAAATGCA-A-AATTTCATCTAAATAGTTTGTAGTTTTGTAAACAA
** *
10223193 GTTTTGGTCTTTCAATTA
322 GTTTCAGTCCTTCAATTA
* * * *
10223211 AAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAA
1 AAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAA
10223273 CTTTCACGAG
Statistics
Matches: 357, Mismatches: 38, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
338 34 0.10
339 35 0.10
340 288 0.81
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (339 bp):
AAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAAA
CTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAAACTT
ACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
ATTTCTTTTATAACTCCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
AACAATCCATGCTCAGGGAAATGCAAAATTTCATCTAAATAGTTTGTAGTTTTGTAAACAAGTTT
CAGTCCTTCAATTA
Found at i:10223350 original size:956 final size:953
Alignment explanation
Indices: 10220709--10223779 Score: 5274
Period size: 956 Copynumber: 3.2 Consensus size: 953
10220699 GTTAATTAAT
* * * * *
10220709 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
* * *
10220774 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACATCCGAACTTGTCAAACTTTTA
66 TTACTTACGTAAGAATT-TTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
* * * *
10220839 CGATATCTTTTATAACTTCGATTCCTGAAAGCATTCAAGATGATCCATTTTTTCGAG-------T
130 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
* * * * *
10220897 ---A-A-TCCATGCTC-GAGAAAT-CGAATAATTTTGTCTAAATAGTTTATCTTTTTGTAAACAA
195 CGAACATTCCATGCTCAGGGAATTGC-AA-AATTTGGTCTAAATAGTTTGTATTTTTGTAAACAA
*
10220955 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAG-AA---------TTGGTTCTTGGATGAGC
258 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTTGGTTCTTGGATGAAC
* * * * * *
10221010 TTTCAAACTCGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
322 ATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTC
* * * *
10221075 CGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTTGACGAACATCCGA
387 TGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
*
10221140 GCTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATT
452 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATT
10221205 CTTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGT
517 CTTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGT
*
10221270 CGTTTTCTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
582 CGTTTTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
10221335 TTGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
647 TTGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
*
10221400 GAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTTGAGAAATCACATCA
712 GAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCA
*
10221465 TTTGGTCAAAATAGTTAGTCATTTTGAAAACAAGTATTGGACTGTAAATTAATAACTTAGTTACA
777 TTTGGTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACA
*
10221530 AGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGA
842 TGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGA
10221595 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
907 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10221642 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
10221707 TTACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTAC
66 TTACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTAC
*
10221772 AATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
131 GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
* *
10221837 GAACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTT
196 GAACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTT
10221902 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTTGGTTCTTGGATGAACATTC
261 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTTGGTTCTTGGATGAACATTC
10221967 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
326 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
*
10222032 CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTT
391 CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
10222097 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
456 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
* * * *
10222162 CGAGCAATTTTTCGAACATTCCATGCTCGGGAAATTGCATAATTTGGTCTTAATATTTTGTCTTT
521 CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTCGTT
10222227 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
586 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
10222292 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
651 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
*
10222357 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTA
716 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTG
10222422 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
781 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
* * **
10222487 AATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACAAACTTATTTTTGTGAGAAT
846 AATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGAGAAT
10222552 TGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
911 TGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10222595 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
* *
10222660 TTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAATTTTTA
66 TTACTTACGTAAGAA-TTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
*
10222725 CGATTTCTTTTATAACTCCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
130 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
10222790 CGAACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGT
195 CGAACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGT
*
10222855 TTCAGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACA
260 TTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGG-T-TCTCTTGGTTCTTGGATGAACA
10222920 TTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCT
323 TTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCT
* *
10222985 GAACTTGTTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGATCCGAA
388 GAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAA
10223050 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTC
453 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTC
* *
10223115 TTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTC
518 TTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTC
10223180 GTTTTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
583 GTTTTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGT
10223245 TGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAG
648 TGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAG
10223310 AATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCAT
713 AATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCAT
*
10223375 TTGGTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACAT
778 TTGGTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACAT
* * * *
10223440 GAGAATTGTTTCTCTCTGAGTTCTTGGAAGAACTTCCAAACTTGTCAAAAACTTATTTACATGAG
843 GAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGAG
* *
10223505 AATTGTTTCTCTCTTGGTTCTTTGATGAACATCCAAACTTGTCAAA
908 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10223551 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
* **
10223616 TTATTTACGTAAGAA-TTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTAC
66 TTACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTAC
* *
10223680 GATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATTCATTCTTTCGAGCAATTTTTC
131 GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
** * *
10223745 GAATGTTCCATGCTCAGGAAATTGCATAATTTGGT
196 GAACATTCCATGCTCAGGGAATTGCAAAATTTGGT
10223780 TCTTGAATTA
Statistics
Matches: 2028, Mismatches: 83, Indels: 33
0.95 0.04 0.02
Matches are distributed among these distances:
932 98 0.05
933 75 0.04
939 1 0.00
942 1 0.00
943 2 0.00
944 76 0.04
945 7 0.00
946 1 0.00
953 703 0.35
954 352 0.17
955 1 0.00
956 711 0.35
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (953 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAAC
TTACTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
GAACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTT
TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTTGGTTCTTGGATGAACATTC
AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTCGTT
TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTG
GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
AATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGAGAAT
TGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10223368 original size:214 final size:214
Alignment explanation
Indices: 10222995--10223488 Score: 580
Period size: 214 Copynumber: 2.3 Consensus size: 214
10222985 GAACTTGTTA
* * * **
10222995 AAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAAC
* * * * *
10223060 TTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
* * * * * ** * * * *
10223125 TTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTTTTGTAAA
130 ATTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAA
* *
10223190 CCAGTTTTGGTCT-TTCAATT
195 CAAGTTTTGGACTGTT-AATT
* * * * *
10223210 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACT
* *
10223275 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGCAA
66 TTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATT-CTTTCGAGCAA
* * **
10223339 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTAGTCATTTTGAAAA
130 ATTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAA
10223404 CAAGTTTTGGACTGTTAATT
195 CAAGTTTTGGACTGTTAATT
* * *
10223424 AATAACTTAGTTACATGAGAATTGTTTCT-CTCTGAGTTCTTGGAAGAACTTCCAAACTTGTCAA
1 AA-AACTTATTTACGTGAGAATTGTTTCTCCT-TG-GTTCTTGGAAGAACTTCCGAACTTGTCAA
10223488 A
63 A
10223489 AACTTATTTA
Statistics
Matches: 233, Mismatches: 41, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
214 151 0.65
215 57 0.24
216 25 0.11
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (214 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAAA
TTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAAC
AAGTTTTGGACTGTTAATT
Found at i:10223666 original size:60 final size:62
Alignment explanation
Indices: 10223427--10223672 Score: 365
Period size: 62 Copynumber: 4.0 Consensus size: 62
10223417 GTTAATTAAT
* * * *
10223427 AACTTAGTTACATGAGAATTGTTTCTCTC-TGAGTTCTTGGAAGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGATGAACATCCAAACTTGTCAAA
* *
10223489 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
*
10223551 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCTAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCAAACTTGTCAAA
* *
10223613 AACTTATTTACGTAAGAA-T-TTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
10223673 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
59 1 0.01
60 38 0.22
61 1 0.01
62 129 0.75
63 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
Found at i:10223960 original size:181 final size:179
Alignment explanation
Indices: 10223610--10223960 Score: 445
Period size: 181 Copynumber: 1.9 Consensus size: 179
10223600 CTAACTTGTC
* * * *
10223610 AAAAACTTATTTACGTAAGAATTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
1 AAAAACTTATTTACATAAGAATTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * * * * *
10223675 TTTACGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATTCATTCTTTCGAGCAAT
66 TTTACGATTTCTTTTATAACTTCGGTTCCTAAAAATATTCAAGATAATGCATTCCTTCGAGAAAT
** * * **
10223740 TTTTCGAATGTTCCATGCTCAGGAAATTGCATAATTTGGTTCTTGAATT
131 TTTTCGAACATTCAACGCTCAGGAAATCCCATAATTTGGTTCTTGAATT
* *
10223789 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGGACATCCAAACTTGTCAAA
1 AAAAACTTATTTACATAAGAA-T-TTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10223854 CTTTTAGGATTTCTTTTATAACTTCGTTTCC-AAAAATAATTCAAGATAATGCATTCCTTCTAGA
64 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAAT-ATTCAAGATAATGCATTCCTTCGAGA
*
10223918 AATTTTTCGAACATTCAACGCTC-GGAAAATCCCATCATTTGGT
128 AATTTTTCGAACATTCAACGCTCAGG-AAATCCCATAATTTGGT
10223961 CTAAATAGTT
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
179 19 0.13
180 7 0.05
181 119 0.82
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (179 bp):
AAAAACTTATTTACATAAGAATTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
TTTACGATTTCTTTTATAACTTCGGTTCCTAAAAATATTCAAGATAATGCATTCCTTCGAGAAAT
TTTTCGAACATTCAACGCTCAGGAAATCCCATAATTTGGTTCTTGAATT
Found at i:10224203 original size:215 final size:215
Alignment explanation
Indices: 10223785--10224284 Score: 546
Period size: 215 Copynumber: 2.3 Consensus size: 215
10223775 TTGGTTCTTG
* * *
10223785 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGGAC-ATCCAAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTAT-CGAACTTG
* * * * * * *
10223849 TCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAATAATTCAAGATAATGCATTCCTTC
64 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCATTCCTTC
* * * *
10223914 TAGAAATTTTTCGAACATTCAACGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
129 TAGAAATTTTCCAAACATTCAACGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
*
10223979 TGAAAACAAGTTTTGGTCCTA-A
194 TGAAAACAAGTTTTGG-ACTATA
* * *
10224001 AATTAAAAAGTCATTTACGTGAGAATTGTATCTC-CTTAGTTCTTGGACGAACTATCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTATCGAACTTGT
*** * *
10224065 CAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTGAAGGATTCAAG-TCGATCCATTCCTT-
65 CAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGAT-AATCCATTCCTTC
* * * *
10224128 TGGGCAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATATTTTGTCA
129 T-AG-AAATTTTCCAAACATTCAACGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCA
* *
10224191 TTTTGTAAACAAGTTTTGGACTATT
191 TTTTGAAAACAAGTTTTGGACTATA
* * * * * * *
10224216 AATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATTTTTGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTATCGAACTTGT
10224281 CAAA
65 CAAA
10224285 AACTTATTTA
Statistics
Matches: 236, Mismatches: 40, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
214 7 0.03
215 164 0.69
216 65 0.28
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (215 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTATCGAACTTGTC
AAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCATTCCTTCTA
GAAATTTTCCAAACATTCAACGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
AAAACAAGTTTTGGACTATA
Found at i:10224386 original size:62 final size:62
Alignment explanation
Indices: 10224230--10224391 Score: 220
Period size: 62 Copynumber: 2.6 Consensus size: 62
10224220 AATAACTTAG
* * * * * *
10224230 TTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATTTTTGAACTTGTCAAAAACTTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
**
10224292 TTACGAGAGAATTGTTTCTCTCTTGGAACTTGGA-GAAAGTTTCGAACATGTCAAAAAATTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAGTTTCGAACATGTCAAAAAATTAT
10224354 TTACGTA-AGAATTGTTTCTCTCTTGGTTCTTGGACGAA
1 TTACG-AGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
10224392 CATCCGAACT
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
61 1 0.01
62 84 0.97
63 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (62 bp):
TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
Found at i:10224663 original size:62 final size:62
Alignment explanation
Indices: 10224560--10224748 Score: 252
Period size: 62 Copynumber: 3.0 Consensus size: 62
10224550 TCCTTGAATT
* * * * *
10224560 AAAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
10224622 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10224684 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10224746 AAA
1 AAA
10224749 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10224673 original size:340 final size:341
Alignment explanation
Indices: 10224013--10225303 Score: 1820
Period size: 340 Copynumber: 3.8 Consensus size: 341
10224003 TTAAAAAGTC
* * * *
10224013 ATTTACGTGAGAATTGTATCTC-CTTAGTTCTTGGACGAACTAT-CGAACTTGTCAAACTTTCAC
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTCAAACTTTTAC
* * * * * *
10224076 GAGTTCTTTTATAACTTAGGTTCCTTG-AAGGATTCAAG-TCGATCCATTCCTTT-GGGCAAATT
65 GATTTCTTTTATAACTTTGGTTCCATGAAAGTATTCAAGAT-GATCCATT-CTTTCGAGCAATTT
* * * * *
10224138 TCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATATTTTGTCATTTTGTAAACAA
128 TTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * *
10224203 GTTTTGG-ACTATTAATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGA
193 GTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
* * * * ** *
10224267 ATTTTTGAACTTGTCAAAAACTTATTTACGA-GAGAATTGTTTCTCTCTTGGAACTTGGAGAAAG
257 ACTTTCGAACTTGTCAAAAACTTATTTAC-ATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAG
*
10224331 TTTCGAACATGTCAAAAAATT
321 TTTCGAACTTGTCAAAAAATT
10224352 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
*
10224417 ATTTCTTTTATAACTTCGGTT-CATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
66 ATTTCTTTTATAACTTTGGTTCCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
* *
10224481 GAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
131 GAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * *
10224546 TTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGATGAACTT
196 TTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
10224611 TCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCG
261 TCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCG
10224676 AACTTGTCAAAAAATT
326 AACTTGTCAAAAAATT
10224692 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
*
10224757 ATTTCTTTTATAACTTTGGTT-CATGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTC
66 ATTTCTTTTATAACTTTGGTTCCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
* * * *
10224821 GAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACAAGTT
131 GAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * *
10224886 TCGGTCCTTGAATTAAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
196 TTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
* * * * * *
10224951 TCAAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCA
261 TCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCG
*
10225016 AACTTGTCAAAAACTT
326 AACTTGTCAAAAAATT
* *
10225032 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
* * ** *
10225097 ATTT-TTTTATAACTTTGATTCCA--AAATGTATTCAAGATAATCCATTCCATCTAG-ATATTTT
66 ATTTCTTTTATAACTTTGGTTCCATGAAA-GTATTCAAGATGATCCATTCTTTCGAGCA-ATTTT
* * *
10225158 TCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
129 TCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
10225223 TTTTGGTCTTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACGA
194 TTTTGGTC-CTTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGA
10225286 ACTTTCGAACTTGTCAAA
257 ACTTTCGAACTTGTCAAA
10225304 CTTTCACGAG
Statistics
Matches: 865, Mismatches: 75, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
338 4 0.00
339 173 0.20
340 685 0.79
341 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (341 bp):
ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
ATTTCTTTTATAACTTTGGTTCCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTC
GAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT
TCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCG
AACTTGTCAAAAAATT
Found at i:10224997 original size:62 final size:62
Alignment explanation
Indices: 10224900--10225088 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 62
10224890 TCCTTGAATT
* * * *
10224900 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10224962 AAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10225024 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10225086 AAA
1 AAA
10225089 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10225424 original size:215 final size:214
Alignment explanation
Indices: 10225024--10225518 Score: 660
Period size: 215 Copynumber: 2.3 Consensus size: 214
10225014 CAAACTTGTC
* * *
10225024 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10225089 CTTTTACGATTTTTTTATAACTTTGATTCCAAAATGTATTCAAGATAATCCATTCCATCTAGATA
65 CTTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATA
* * * *
10225154 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 ATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10225219 CAAGTTTTGGTCTTTTAAATT
195 CAAGTTTCGGTC-CTTAAATT
10225240 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10225304 CTTTCACGAGTTCTTTTATAACTTAGGTT-CATTAAA-GTATTCAAGACGATCCATTACTTTTAG
65 CTTTCACGA-TTCTTTTATAACTTAGATTCCA--AAATGTATTCAAGACAATCCATTACATCTAG
* * *
10225367 CA-AATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCATTTT
127 -ATAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCT-AAATAGTTTGTCATTTT
*
10225429 GTAAACAAGTTTCGGTCCTTGAATT
190 GTAAACAAGTTTCGGTCCTTAAATT
*
10225454 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10225519 AACTTATTTA
Statistics
Matches: 248, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
214 33 0.13
215 137 0.55
216 74 0.30
217 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATAA
TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTCGGTCCTTAAATT
Found at i:10225555 original size:62 final size:62
Alignment explanation
Indices: 10225454--10225580 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10225444 TCCTTGAATT
* * * * * *
10225454 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
**
10225516 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
10225578 AAA
1 AAA
10225581 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10225770 original size:278 final size:276
Alignment explanation
Indices: 10224622--10225858 Score: 1123
Period size: 278 Copynumber: 4.5 Consensus size: 276
10224612 CGAACTTGTC
** * * * * *
10224622 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10224687 AAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10224752 TTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
131 TTACGATTTCTTTTATAAC-TTGGTTCATGAAAGTATTCAAGATGATCCATTC-TTTGAGCAATT
*
10224817 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10224882 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
* *
10224900 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10224965 AACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTC--AAAC
* * * * * * ** **
10225030 TTATTTACGTGAGAATTGTTTCTCT--CTTGGTTCTTGGATGAA-CATCCGAACTTG-T-CAAAC
129 -T-TTTAC----GATTTCTTT-TATAACTTGGTTCAT-GA--AAGTATTC-AAGATGATCCATTC
* * ** ** ** * ** ** * * *
10225090 TTTTA-CGATTTTTTTATA-ACTTTGAT--TC-CAAAAT-GTATTCAAGATAATC-CATTCCATC
183 TTTGAGCAATTTTTCGA-ACA-TTCCATGCTCGGGAAATCGCA-T-AATTTGGTCTAAAT--ATT
* ** * *
10225148 TAGATATTTTTCG--AAC-A--TTCCATGCTCGAA--
242 TTG-TATTTTT-GTAAACAAGTTTCGGTCCTTGAATT
** * * * * * * ** * * **
10225178 AAATCCCATCATTT-GGTCTA-AA-TAGTT-TGTCATT--TT-GTAAAC-AAGTTTTGGTCTTTT
1 AAA-AAC-TTATTTATGT-GAGAATTGGTTCTCTC-TTGGTTCTTGGACGAACTTTCGAAC--TT
* * * *
10225235 AAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTG
60 --GTCAAAAACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * *
10225299 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCATTAAAGTATTCAAGACGATCCATTACTTT
123 TCAAACTTTTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATT-CTTT
* * * * * * * *
10225364 TAGCAAATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCA-T
186 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCT-AAATATTTTGT-ATT
10225426 TTTGTAAACAAGTTTCGGTCCTTGAATT
249 TTTGTAAACAAGTTTCGGTCCTTGAATT
10225454 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
10225519 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10225584 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATT
* *
10225649 TTTCGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTATTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10225714 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
10225732 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10225797 AACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10225859 AACTTATTTA
Statistics
Matches: 743, Mismatches: 151, Indels: 130
0.73 0.15 0.13
Matches are distributed among these distances:
268 7 0.01
269 12 0.02
270 16 0.02
271 21 0.03
272 12 0.02
273 11 0.01
274 23 0.03
275 12 0.02
276 45 0.06
277 128 0.17
278 332 0.45
279 9 0.01
280 29 0.04
281 8 0.01
282 13 0.02
283 16 0.02
284 23 0.03
285 7 0.01
286 11 0.01
287 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (276 bp):
AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACAAG
TTTCGGTCCTTGAATT
Found at i:10225829 original size:62 final size:61
Alignment explanation
Indices: 10225732--10225920 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 61
10225722 TCCTTGAATT
* *
10225732 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * *
10225794 AAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10225856 AAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10225918 AAA
1 AAA
10225921 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 3 0.03
62 107 0.96
63 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10226074 original size:340 final size:338
Alignment explanation
Indices: 10225454--10226133 Score: 999
Period size: 340 Copynumber: 2.0 Consensus size: 338
10225444 TCCTTGAATT
** *
10225454 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10225519 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * *
10225584 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTTCGATTCA-GAAAGTATTCAAGATAATCCATTCCTTCGAGAAATT
* * * *
10225649 TTTCGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTATTTTTGTAAACA
195 TTTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACA
* * *
10225714 AGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACG
260 AGTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTCGGTTCTTGGACG
10225778 AACTTTCGAACTTGTC
323 AACTTTCGAACTTGTC
* * *
10225794 AAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* *
10225858 AAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACT
* * *
10225923 TTTACGATTTCTTTTATATCTTTGATTCCA-AAATGTATTCAAGATAATCCATTCCTTCTAGAAA
130 TTTACGATTTCTTTTATAACTTCGATT-CAGAAA-GTATTCAAGATAATCCATTCCTTCGAGAAA
* *
10225987 TTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAGTTTGGCA-TTTTGTAA
193 TTTTTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTT-GCATTTTTGTAA
* * * *
10226051 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGGAT
257 ACAAGTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTCTTGGAC
10226116 GAACTTTCGAACTTGTC
322 GAACTTTCGAACTTGTC
10226133 A
1 A
10226134 CACTTTCACG
Statistics
Matches: 305, Mismatches: 30, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
339 37 0.12
340 264 0.87
341 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (338 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGATTCAGAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTT
TTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACAA
GTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTCTTGGACGAAC
TTTCGAACTTGTC
Found at i:10226238 original size:215 final size:216
Alignment explanation
Indices: 10225856--10226351 Score: 637
Period size: 215 Copynumber: 2.3 Consensus size: 216
10225846 TGAACTTGTC
* * *
10225856 AAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
10225921 CTTTTACGATTTCTTTTATATCTTTGATTCCAAAATGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAATGTATTCAAAATAATCCATTCCTTCTAGAA
* * * * **
10225986 ATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAGTTTGGCATTTTGTAA
131 ATTTTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAA
*
10226051 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * * *
10226072 AAAAACTTATTTACGTGAGAATTGTATCTC-CTCGGTTGTTGGATGAACTTTCGAACTTGTCACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10226136 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-GTATTCAAAACT-ATCCATTCCTT-TGA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCC-AAAATGTATTCAAAA-TAATCCATTCCTTCT-A
* *
10226198 GCAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
128 G-AAATTTTCCAAACATTCAATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGGCATTT
10226261 TGTAAACAAGTTTTGGACTGTTAATT
191 TGTAAACAAGTTTTGGACTGTTAATT
* * *
10226287 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10226352 AACTTATTTA
Statistics
Matches: 239, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 3 0.01
215 171 0.72
216 65 0.27
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAATGTATTCAAAATAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10226334 original size:555 final size:554
Alignment explanation
Indices: 10225516--10227246 Score: 2510
Period size: 555 Copynumber: 3.1 Consensus size: 554
10225506 CGAACTTGTC
* * * * *
10225516 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * *
10225581 CTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGA-TGATCCATTCTTTCGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACT-ATCCATTCTTT-GAGC
* * * * * * * *
10225645 AATTTTTCGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-ATTTTTGT
129 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCA-TTTTGT
* * * * * * *
10225709 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTT
193 AAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
10225773 GGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGA
257 GGACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTGGTTCTTGGA
* *
10225838 CGAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGA
322 CGAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10225903 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATATCTTTGATTCCAAAATGTATTCAAGAT
387 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAA-GTATTCAAGAT
* * *
10225968 AATCCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAA
451 AATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTAGGAAAATCCCATCATTTGGTCTAAA
*
10226033 TAGTTTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
516 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* * * * * *
10226072 AAAAACTTATTTACGTGAGAATTGTATCTC-CTCGGTTGTTGGATGAACTTTCGAACTTGTCACA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
*
10226136 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAAACTATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATT-CTTTGAGCA
10226201 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
10226266 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
10226331 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGA
260 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGA
*
10226396 ACATTC-GAGCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AC
325 AC-TTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10226459 AATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATA
389 -ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCC-AAAAGTATTCAAGATA
* * *
10226524 ATCCATTCCTTTTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
452 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTAGGAAAATCCCATCATTTGGTCTAAAT
10226589 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
517 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
*
10226627 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* *
10226691 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATT-CTTTGAGCA
* *
10226756 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTCGTCAAAATAGTTTGTCATTTCGTAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
10226821 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
10226886 CGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGA
260 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGA
* * * *
10226951 ACTT-TCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTGGGTTCTTGGAAGAAC
325 ACTTCT-GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
10227015 ATCCGAACTTGTCAAACTTTTATGATTTATTTTATAAC-TTCAGTTCCTGAAAGTATTCAAGATG
389 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGA-TTCC-AAAAGTATTCAAGATA
* * * ** * *
10227079 ATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGCTCAGG-AAATCAGATAATTTGATCTAAA
452 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCT-AGGAAAATCCCATCATTTGGTCTAAA
* * * * * *
10227143 TAGTTTGTCGTTTTGTAAATAGGTTTTGTTCCTTGAATT
516 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* * * **
10227182 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10227247 AACTTATTTA
Statistics
Matches: 1062, Mismatches: 100, Indels: 26
0.89 0.08 0.02
Matches are distributed among these distances:
554 9 0.01
555 976 0.92
556 77 0.07
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATTCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGAA
CTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAGTATTCAAGATAATCC
ATTCCTTCTAGAAATTTTTCGAACATTCCATGCTAGGAAAATCCCATCATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:10226388 original size:62 final size:63
Alignment explanation
Indices: 10226290--10226475 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 63
10226280 GTTAATTAAT
* *
10226290 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
* * *
10226352 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATT-CGAGCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
*
10226414 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
10226476 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
61 4 0.04
62 107 0.95
63 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (63 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
Found at i:10226650 original size:895 final size:889
Alignment explanation
Indices: 10225454--10227926 Score: 2471
Period size: 895 Copynumber: 2.8 Consensus size: 889
10225444 TCCTTGAATT
*
10225454 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
* * * *
10225519 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAACTT
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10225584 TTACGATTTCTTTTATAACTTCGGTT-CATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT
130 TTACGATTTCTTTTATAACTTTGATTCCA-GAAAGTATTCAAGATGATCCATTCTTTCGAGAAAT
* ** *
10225648 TTTTCGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-ATTTTTGTAAA
194 TTTTCGAACATTCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCA-TTTTGTAAA
* **
10225712 CAAGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
258 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACCTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* *
10225777 GAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAA
323 GAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTATCACTTGGTTCTTGGACGAA
10225842 CTTCTGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACAT
388 CTTCTGAACTTGTCAAAAACTTATTTACGT-AGAA-TGTTTCTCTCTTAGTTCTTGGA-GAACAT
*
10225907 CCGAACTTGTCAAACTTTTACGATTTCTTTTATATCTTTGATTCCAAAATGTATTCAAGATAATC
450 CCGAACTTGTCAAACTTTTACGATTTCTTTTATATCTTTGATTCCAAAATGTATTCAAGACAAT-
* * *
10225972 CATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAGT
514 CATTCCTTCTAGAAATTTTACGAACATTCAA-GCTTGGAAAAT-ACATCATTTGGTTAAAATAGT
* * *
10226037 TTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC
577 TTGTCATTTTGTAAACAAGTTTTGGACTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * *
10226102 -CTCGGTTGTTGGATGAACTTTCGAACTTGTCACACTTTCACGAGTTCTTTTATAACTT-AGGTT
642 TCTCGGTTCTTGGAAGAACTTTCGAACTTGTCAAACTTTCACGAGTTATTTTATAACTTCA-GTT
*
10226165 CCTTAAAGTATTCAAAACT-ATCCATTCCTTT-GAGCAAA-TTTCCAAACATTCCATGCTC-GAG
706 CCTGAAAGTATTCAAAA-TGATCCATT-CTTTCGAG-AAATTTTCCAAACATTCCATGCTCAG-G
* * * *
10226226 AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTG-GACTGTTAATTAAT
767 AAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGTGACT-TGAATTAAA
* **
10226290 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
831 AACTTAATTACGTGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10226349 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATTCGAGCTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10226414 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAAACT
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTCAAACT
* * *
10226478 TTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTT-TAGAAA
129 TTTACGATTTCTTTTATAACTTTGATTCCAGAAAGTATTCAAGATGATCCATT-CTTTCGAGAAA
* *
10226542 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
193 TTTTTCGAACATTCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
10226607 CAAGTTTTGGTCTTTAAATTAAAAACTTATTTACCTAAGAATT-GTATCTC-CTTGGTTCTTGGA
258 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACCTGAGAATTGGT-TCTCTCTTGGTTCTTGGA
* * * *
10226670 CGAACTTTCAAACTTGTC--AAAC---TTT-CACGAGT-TCT-TTTATAACTTAGGTTCCTT-AA
322 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTAT-TGTTTATCACTT-GGTT-CTTGGA
* * * * ** * * *** * *
10226726 AGTA-TTC-AAGAC--GATCCATTAC-T-TTTA-GCA-AAT-TTCCAAACATTCCA-TGC-TCGA
384 CGAACTTCTGA-ACTTG-TCAAAAACTTATTTACGTAGAATGTTTCTCTC-TT--AGTTCTTGGA
* * * * ** * *
10226780 GAA-ATCAC-ATCATTTCGTCAAAATAGTTTGTC-ATTTCGTAAACAAGT-TTTGGACTGT-TAA
444 GAACATC-CGA--ACTT-GTCAAACT--TTT-ACGATTTCTTTTA-TA-TCTTT-GA-T-TCCAA
* ** * ** * * * * *
10226840 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTG--GTTCTTGGACGAACTTTCAAACTTGT
497 --AAT---GTA-TT-CAAGACAATCATTCCT-TCTAGAAATT-TT--ACGAACATTCAAGCTTG-
* * * * * * * * ** *** *
10226903 CAAAA-AC-TTATTTATGTGAGAATTGTTTGTC-TCTTGGT--TCTTG-GACGAACTTTCAAACT
550 GAAAATACATCATTT-GGTTAAAATAGTTTGTCAT-TTTGTAAACAAGTTTTGGACTTT-AAA--
* * * *
10226962 TGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTGGGTTCTTGGAAGAACATCCGAACTTGT
610 T-T-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGAAGAACTTTCGAACTTGT
* * * *
10227027 CAAACTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCG
673 CAAACTTTCACGAGTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAAATGATCCATTCTTTCG
* * * *
10227092 AGAAATTTTTCAAACATTCCATGCTCAGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTT
738 AGAAATTTTCCAAACATTCCATGCTCAGGAAATCACATAATTTGATCAAAATAGTTTGTCATTTT
* * ** *
10227157 GTAAATAGGTTTTGTTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCT
803 GTAAACAAGTTTTGTGACTTGAATTAAAAACTTAATTACGTGAGAATTGGCTCTCTCTTGGTTCT
*
10227222 TGGACGAACTTTCAAACTTGTC
868 TGGACGAACTTCCAAACTTGTC
* *
10227244 AAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAA
*
10227309 AACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * *
10227374 TTATGATTTATTTTATAAC-TTCAGTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAGAAAT
130 TTACGATTTCTTTTATAACTTTGA-TTCCAGAAAGTATTCAAGATGATCCATTCTTTCGAGAAAT
* ** * * *
10227438 TTTTCAAACATTTTATGCTC-AAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTAAA
194 TTTTCGAACATTCCATGCTCGAA-AAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
10227502 TAGGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
258 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACCTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * *
10227567 GAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAA
323 GAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTATCACTTGGTTCTTGGACGAA
* *
10227632 CTT-TCGAACTTGTCAAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACA
388 CTTCT-GAACTTGTCAAAAACTTATTTACGTA-GAA-TGTTTCTCTCTTAGTTCTTGGA-GAACA
* * * * * * * *
10227696 TCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-GAATTCAAGACGA
449 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATATCTTTGATTCC-AAAATGTATTCAAGACAA
* * * * *
10227760 TACATTCCTT-TGAGCAAA-TTTCCAAACATTCCACGC-TCGAGAAATAACATCATTTGGTCAAA
513 T-CATTCCTTCT-AG-AAATTTTACGAACATT-CAAGCTTGGA-AAAT-ACATCATTTGGTTAAA
* * * *
10227822 ATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACATGAGAATTG
572 ATAGTTTGTCATTTTGTAAACAAGTTTTGGACT-TTAAATTAAAAACTTATTTACGTGAGAATTG
** * *
10227886 TTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAA
636 TTTCTCTCTCGGTTCTTGGAAGAACTTTCGAACTTGTCAAA
10227927 AACTTATTTA
Statistics
Matches: 1252, Mismatches: 223, Indels: 205
0.75 0.13 0.12
Matches are distributed among these distances:
878 4 0.00
879 8 0.01
880 9 0.01
881 11 0.01
882 2 0.00
883 11 0.01
884 9 0.01
885 5 0.00
886 9 0.01
887 14 0.01
888 17 0.01
889 11 0.01
890 5 0.00
891 10 0.01
892 29 0.02
893 15 0.01
894 94 0.08
895 724 0.58
896 111 0.09
897 11 0.01
898 31 0.02
899 8 0.01
900 4 0.00
901 10 0.01
902 15 0.01
903 15 0.01
904 7 0.01
905 4 0.00
906 8 0.01
907 10 0.01
909 11 0.01
910 9 0.01
911 7 0.01
912 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (889 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTTGATTCCAGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTT
TTCGAACATTCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCCTTGAATTAAAAACTTATTTACCTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
CTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTATCACTTGGTTCTTGGACGAACTT
CTGAACTTGTCAAAAACTTATTTACGTAGAATGTTTCTCTCTTAGTTCTTGGAGAACATCCGAAC
TTGTCAAACTTTTACGATTTCTTTTATATCTTTGATTCCAAAATGTATTCAAGACAATCATTCCT
TCTAGAAATTTTACGAACATTCAAGCTTGGAAAATACATCATTTGGTTAAAATAGTTTGTCATTT
TGTAAACAAGTTTTGGACTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTC
TTGGAAGAACTTTCGAACTTGTCAAACTTTCACGAGTTATTTTATAACTTCAGTTCCTGAAAGTA
TTCAAAATGATCCATTCTTTCGAGAAATTTTCCAAACATTCCATGCTCAGGAAATCACATAATTT
GATCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGTGACTTGAATTAAAAACTTAATTACGTGA
GAATTGGCTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10226793 original size:215 final size:216
Alignment explanation
Indices: 10226411--10226906 Score: 712
Period size: 215 Copynumber: 2.3 Consensus size: 216
10226401 CGAGCTTGTC
* * *
10226411 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTTCAAACTTGTCAA
* * * * *
10226475 ACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAGA
* * * * * *
10226540 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTCGTA
*
10226605 AACAAGTTTTGGTCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
* * *
10226627 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* ** *
10226691 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAG-A
*
10226756 AA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTCGTCAAAATAGTTTGTCATTTCGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTCGTA
10226820 AACAAGTTTTGGACTGTTAATT
195 AACAAGTTTTGGACTGTTAATT
* *
10226842 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10226907 AACTTATTTA
Statistics
Matches: 248, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
215 180 0.73
216 68 0.27
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTCGTCAAAATAGTTTGTCATTTCGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10226942 original size:62 final size:62
Alignment explanation
Indices: 10226845--10227030 Score: 291
Period size: 62 Copynumber: 3.0 Consensus size: 62
10226835 GTTAATTAAT
*
10226845 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* *
10226907 AACTTATTTATGTGAGAATTGTTTGTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * * *
10226969 AACTTATTTACGTGAGAATTGTTTCACTCTGGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10227031 CTTTTATGAT
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
Found at i:10227279 original size:62 final size:62
Alignment explanation
Indices: 10227182--10227370 Score: 281
Period size: 62 Copynumber: 3.0 Consensus size: 62
10227172 TCCTTGAATT
* ** *
10227182 AAAAACTTAATTACT-TGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTA-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10227244 AAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10227306 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10227368 AAA
1 AAA
10227371 CTTTTATGAT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 115 0.99
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10227280 original size:340 final size:340
Alignment explanation
Indices: 10226627--10228049 Score: 1920
Period size: 340 Copynumber: 4.2 Consensus size: 340
10226617 TCTTTAAATT
* * * * * *
10226627 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10226691 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTATTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTACTTTGAGCA
* *
10226756 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTCG-TCAAAATAGTTTGTCATTTCGTA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTT-GATCAAAATAGTTTGTCATTTTGTA
* * * * *
10226820 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
195 AACAAGTTTTGGACTGTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGG
*
10226885 ACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTGTCTCTTGGTTCTTGGACG
260 ACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10226950 AACTTTCAAACTTGTC
325 AACTTCCAAACTTGTC
* * *
10226966 AAAAACTTATTTACGTGAGAATTGTTTCACTCTGGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10227031 CTTTTATGATTTATTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
66 CTTTCACGAGTTATTTTATAACTT-AGGTTCCTGAAAGTATTCAAGACGATCCATTACTTT-GAG
* * * *
10227094 -AAATTTTTCAAACATTCCATGCTC-AGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTT
129 CAAA-TTTCCAAACATTCCATGCTCGA-GAAATCACATAATTTGATCAAAATAGTTTGTCATTTT
* * ** *
10227157 GTAAATAGGTTTTGTTCCT-TGAATTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTC
192 GTAAACAAGTTTTG-GACTGTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTC
*
10227221 TTGGACGAACTTTCAAACTTGTCAAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTG
256 TTGGACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTG
10227286 GACGAACTTCCAAACTTGTC
321 GACGAACTTCCAAACTTGTC
*
10227306 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10227371 CTTTTATGATTTATTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATTA-TTTCGAG
66 CTTTCACGAGTTATTTTATAACTT-AGGTTCCTGAAAGTATTCAAGACGATCCATTACTTT-GAG
* ** * * * *
10227434 -AAATTTTTCAAACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTG
129 CAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTG
* * *
10227498 TAAATAGGTTTTGGTCCT-TGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCT
193 TAAACAAGTTTTGG-ACTGTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCT
* ** *
10227562 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
10227627 ACAAACTTTCGAACTTGTC
322 ACGAACTTCCAAACTTGTC
**
10227646 AAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * *
10227710 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATACATTCCTTTGAGC
65 ACTTTCACGAGTTATTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTACTTTGAGC
* * * * *
10227775 AAATTTCCAAACATTCCACGCTCGAGAAATAACATCATTTGGTCAAAATAGTTTGTCATTTTGAA
130 AAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTA
* * * * * *
10227840 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGG
*
10227905 ACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAAAATTG-TT-TCTCTTGGTTCTTGGACG
260 ACGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10227968 AACTTCCACACTTGTC
325 AACTTCCAAACTTGTC
* * *
10227984 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCCTGGACTAACCATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CATCCGAACTTGTCAA
10228049 A
65 A
10228050 ATCTTATTTA
Statistics
Matches: 971, Mismatches: 96, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
338 72 0.07
339 59 0.06
340 830 0.85
341 10 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTCACGAGTTATTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTACTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
CGAACTTTCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10227619 original size:62 final size:62
Alignment explanation
Indices: 10227522--10227710 Score: 281
Period size: 62 Copynumber: 3.0 Consensus size: 62
10227512 TCCTTGAATT
* * * *
10227522 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
*
10227584 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
* * * *
10227646 AAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTC
1 AAAAACTTATTTACATGA-GAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
10227708 AAA
1 AAA
10227711 CTTTCACGAG
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 115 0.99
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
Found at i:10228056 original size:63 final size:61
Alignment explanation
Indices: 10227865--10228105 Score: 306
Period size: 63 Copynumber: 3.9 Consensus size: 61
10227855 GTTAATTAAT
* * * *
10227865 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAA
* *
10227927 AACTTATTTATGTGAAAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCACACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA-ACTTGTCAAA
* * * *
10227987 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCCTGGACTAACCATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCC-AACTTGTCAAA
* * *
10228050 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATTCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTT
10228106 CTGAAACTTT
Statistics
Matches: 154, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
59 4 0.03
60 48 0.31
61 4 0.03
62 41 0.27
63 56 0.36
64 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAA
Found at i:10228105 original size:401 final size:402
Alignment explanation
Indices: 10227522--10228388 Score: 1056
Period size: 401 Copynumber: 2.2 Consensus size: 402
10227512 TCCTTGAATT
* * *
10227522 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACTTGAAAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCCAACTTGTCAAA
* * * *
10227587 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAAC
66 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTGGACAAACATCCGAACTTGTCAAAAAC
*
10227652 TTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTCAAACTTTCA
131 TTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTCTCAAACTTTCA
* * *
10227717 CGAGTT-CTTTTATAACTTAGGTTCCTTAAAGAATT-CAAGACGATACATTCCTTT-GAGCAAAT
196 CGA-TTACTTTTATAACTTAGGTTCCTGAAAG-ATTCCAAGACGATACATT-CTTTCAACCAAAT
* *
10227779 TTCCAAACATTCCACGCTCGAGAAATAACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACA
258 TTCCAAACATCCCACGCTCGAGAAATAACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACA
* * * * * *
10227844 AGTTTTGG-ACTGTTAATTAATAACTTAGTTACAT-GAGAATTGTTTCTCTCTTAGTTCTTGGAC
323 AGTTTCGGTACT-TGAATTAAAAACTTAGTTACATGGA-AATTGGTTCTCTCTTAGCTCTTGGAA
*
10227907 GAACTTTCAAACTTGTC
386 GAACTTTCAAACTAGTC
10227924 AAAAACTTATTTA-TGTGAAAATT-GTT-TCTCTTGGTTCTTGGACGAAC-TTCCACACTTGTCA
1 AAAAACTTATTTACT-TGAAAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCCA-ACTTGTCA
* * *
10227985 AAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCCTGGACTAACCATCCGAACTTGTCAAA
64 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTGGAC-AAACATCCGAACTTGTCAAA
* * * *
10228050 ATCTTATTTACGT-GAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATTCGAACTTCTGAAACT
128 AACTTATTTACGTAG-GAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTCTCAAACT
* * * * * * *
10228114 TTTACGATTACTTTTATAACTTCGGTTCCTGAAAGCTTCCAGGATGATTCATTCTTTCAACCAAT
192 TTCACGATTACTTTTATAACTTAGGTTCCTGAAAGATTCCAAGACGATACATTCTTTCAACCAAA
* * * * * * * *
10228179 TTTTCGAACATCCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
257 TTTCCAAACATCCCACGCTCGAGAAATAACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAAC
* * * *
10228244 AAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGAAATTGGTTCTCTCTTGGCTCTTGGAAG
322 AAGTTTCGGTACTTGAATTAAAAACTTAGTTACATGGAAATTGGTTCTCTCTTAGCTCTTGGAAG
*
10228309 AACTTTCGAACTAGTC
387 AACTTTCAAACTAGTC
* * ** * ** * *
10228325 AAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACG-AC-ATCCGAACTTGTCAA
1 AAAAACTTATTTACTTGAAAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCC-AACTTGTCAA
10228388 A
65 A
10228389 CTGTTACGAT
Statistics
Matches: 397, Mismatches: 55, Indels: 26
0.83 0.12 0.05
Matches are distributed among these distances:
399 4 0.01
400 78 0.20
401 257 0.65
402 40 0.10
403 18 0.05
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (402 bp):
AAAAACTTATTTACTTGAAAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCCAACTTGTCAAA
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCCTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTCTCAAACTTTCA
CGATTACTTTTATAACTTAGGTTCCTGAAAGATTCCAAGACGATACATTCTTTCAACCAAATTTC
CAAACATCCCACGCTCGAGAAATAACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGT
TTCGGTACTTGAATTAAAAACTTAGTTACATGGAAATTGGTTCTCTCTTAGCTCTTGGAAGAACT
TTCAAACTAGTC
Found at i:10228495 original size:277 final size:277
Alignment explanation
Indices: 10227984--10228603 Score: 766
Period size: 277 Copynumber: 2.2 Consensus size: 277
10227974 CACACTTGTC
* * * * *
10227984 AAAAACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCCTGGACTAACCATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAA-TTGTTCTCTCTTGGTTCTTGGACGAA-CTTTCGAACTTGTCAA
* * * * * * *
10228049 AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATTCGAACTTCTGAAACT
64 AATCTTATTTACATGAGAACTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACT
* ** * * * * *
10228114 TTTACGATTACTTTTATAACTTCGGTTCCTGAAAGCTTCCAGGATGATTCATTCTTTCAACCAAT
129 GTTACGATTACTTTTATAACTTCGGTTCCAAAAAGCTTCCAAGATAATCCATTCCTTCAACAAAT
** *
10228179 TTTTCGAACATCCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
194 TTTTCGAACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10228244 AAGTTTCGGTCC-TTGAATT
259 AAGTTTCGG-CCTTTAAATT
* * *
10228263 AAAAACTTATTTACGTG-GAAATTGGTTCTCTCTTGGCTCTTGGAAGAACTTTCGAACTAGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* *
10228327 AGA-CTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAAC
64 A-ATCTTATTTACATGAGAACTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAAC
* * * * *
10228390 TGTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG-TATTCAAGTTAATCCATTCCTTCTAGAA
128 TGTTACGATTACTTTTATAACTTCGGTTCCAAAAAGCT-TCCAAGATAATCCATTCCTTCAACAA
* * *
10228454 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATTATTTGGTCTAAATAGTTTGTCATTTTGTAA
192 ATTTTTCGAACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
*
10228519 ACAAGTTTTGGCCTTTAAATT
257 ACAAGTTTCGGCCTTTAAATT
* *
10228540 AAAAACTTATTTACGTGAGAATTGTATCTC-CCTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10228604 CTTTTACGAG
Statistics
Matches: 291, Mismatches: 43, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
276 34 0.12
277 165 0.57
278 53 0.18
279 39 0.13
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
TCTTATTTACATGAGAACTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTGT
TACGATTACTTTTATAACTTCGGTTCCAAAAAGCTTCCAAGATAATCCATTCCTTCAACAAATTT
TTCGAACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTCGGCCTTTAAATT
Found at i:10228710 original size:215 final size:216
Alignment explanation
Indices: 10228358--10228819 Score: 655
Period size: 215 Copynumber: 2.1 Consensus size: 216
10228348 ATTTCACTCT
* * *
10228358 TGGTTCTTGGACG-ACATCCGAACTTGTCAAACTGTTACGATTTCTTTTATAACTTCGGTTCCAA
1 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTTCCAA
* * * * *
10228422 AAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
66 AAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAATCACA
* * * *
10228487 TTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCT-TTAAATTAAAAACTTATT
131 TCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTT-AATTAAAAACTTAGT
10228551 TACGTGAGAATTGTATCTC-CC
195 TACGTGAGAATTGTATCTCTCC
* * * **
10228572 TGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTTCCTT
1 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTTCCAA
* *
10228637 AAAGCATTCAAGATGATCCATTCCTT-TGAGCAAA-TTTCCAAACATTCCATGCTCGAGAAATCA
66 AAAGCATTCAAGATAATCCATTCCTTCT-AG-AAATTTTCCAAACATTCCATGCTCGAAAAATCA
*
10228700 CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
129 CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAG
* *
10228765 TTACGTGAGAATTGTTTCTCTCT
194 TTACGTGAGAATTGTATCTCTCC
*
10228788 TGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10228820 AACTTATTTA
Statistics
Matches: 218, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
214 13 0.06
215 170 0.78
216 35 0.16
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTTCCAA
AAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAATCACA
TCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAGTT
ACGTGAGAATTGTATCTCTCC
Found at i:10228856 original size:62 final size:63
Alignment explanation
Indices: 10228758--10228943 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 63
10228748 GTTAATTAAT
* *
10228758 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
* * *
10228820 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATT-CGAGCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
*
10228882 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
10228944 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
61 4 0.04
62 107 0.95
63 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (63 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
Found at i:10229264 original size:62 final size:62
Alignment explanation
Indices: 10229190--10229407 Score: 323
Period size: 62 Copynumber: 3.5 Consensus size: 62
10229180 CTTAGGTACA
* *
10229190 TGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTATG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* *
10229252 TGAAAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCACACTTGTCAAAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * * * * *
10229312 TGAGAATTTTTTCTCTCTTGGTTCCTGGACTAACATCCGAACTTGTCAAAATCTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
*
10229374 TGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10229408 ATTCGAACTT
Statistics
Matches: 138, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 53 0.38
61 4 0.03
62 81 0.59
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
Found at i:10230022 original size:215 final size:216
Alignment explanation
Indices: 10229666--10230131 Score: 616
Period size: 215 Copynumber: 2.2 Consensus size: 216
10229656 TACTATTTCA
* * * *
10229666 CTCTTGGTTCTTGGACG-ACATCCGAACTTGTTAAACTGTTACGATTTCTTTTATAACTTCGGTT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTT
* * ***
10229730 CCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAAT
66 CCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAAT
* * * * *
10229795 CCCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTT
131 CACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTAAATTAAAAACTT
** *
10229860 ATTTACGTGAGAATTGTATCT
196 AGCTACGTAAGAATTGTATCT
* * *
10229881 C-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTAGGTT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTT
** * *
10229945 CCTTAAAGCATTCAAGATGATCCATTCCTT-TGAGCAAA-TTTCCAAACATTCCATGCTCGAGAA
66 CCAAAAAGCATTCAAGATAATCCATTCCTTCT-AG-AAATTTTCCAAACATTCCATGCTCGAAAA
* * *
10230008 ATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAGGTTTTGGACTGTGAATTAATAAC
129 ATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTAAATTAAAAAC
*
10230073 TTAGCTACGTAAGAATTGTTTCT
194 TTAGCTACGTAAGAATTGTATCT
* *
10230096 CTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10230132 AACTTATTTA
Statistics
Matches: 215, Mismatches: 32, Indels: 7
0.85 0.13 0.03
Matches are distributed among these distances:
214 15 0.07
215 167 0.78
216 33 0.15
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTGTTACGAGTTCTTTTATAACTTAGGTT
CCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAAT
CACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTAAATTAAAAACTT
AGCTACGTAAGAATTGTATCT
Found at i:10230168 original size:62 final size:62
Alignment explanation
Indices: 10230078--10230249 Score: 299
Period size: 62 Copynumber: 2.8 Consensus size: 62
10230068 ATAACTTAGC
* * *
10230078 TACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTATT
10230140 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTATT
* *
10230202 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10230250 TTGAAACTTT
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 105 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTAAAAAACTTATT
Found at i:10230501 original size:62 final size:62
Alignment explanation
Indices: 10230430--10230581 Score: 200
Period size: 62 Copynumber: 2.5 Consensus size: 62
10230420 GATTGGTTCT
* * *
10230430 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA-AGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAACA-ACTTATTTACATAAGAACTGTTTCA
* * * *
10230492 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAACAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAACAACTTATTTACATAAGAACTGTTTCA
* *
10230554 CTCTTGGTTCTTGGATG-ACATCCGAACT
1 CTCTTGGTTCTTGGACGAACTTCCGAACT
10230582 TTTCAAACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
61 10 0.13
62 68 0.86
63 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAACAACTTATTTACATAAGAACTGTTTCA
Found at i:10230728 original size:888 final size:889
Alignment explanation
Indices: 10229604--10232357 Score: 4623
Period size: 888 Copynumber: 3.1 Consensus size: 889
10229594 AATTGGTTCT
* * * * * * * * * *
10229604 CTCTTGGCTCTTGGAAGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTATTTCACTC
1 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAAAAACTTATTTACGTAAGAATTATTTCTCTC
*
10229669 TTGGTTCTTGGACGACATCCGAACTTGTT-AAACTGTTACGATTTCTTTTATAACTTCGGTTCCA
66 TTGGTTCTTGGACGACATCCGAACTT-TTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCA
* *
10229733 AAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCC
130 AAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCC
*
10229798 ATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATT
195 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATT
*
10229863 TACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTT
260 TACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTT
*
10229928 CTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAAACA
325 CTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACA
*
10229993 TTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAGGTTTTGGA
390 TTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGA
* *
10230058 CTGTGAATTAATAACTTAGCTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
455 CTGTTAATTAATAACTTAGTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
10230123 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
520 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
* *
10230188 GTAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTG
585 GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTG
* *
10230253 AAACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATCCAATATGATCCATTCTTTCGA
650 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
*
10230318 GCAATTTTTTGAACATCTAATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTG
715 GCAATTTTTTGAACATCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
10230382 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGATTGGTTCTCTCTTGGTTCTTGGACG
780 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGATTGGTTCTCTCTTGGTTCTTGGACG
10230447 AACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
845 AACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
* *
10230492 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAACAACTTATTTACGTAAGAATTGTTTCTCTC
1 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAAAAACTTATTTACGTAAGAATTATTTCTCTC
* * *
10230557 TTGGTTCTTGGATGACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCAAA
66 TTGGTTCTTGGACGACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
*
10230622 AAAGTATTCAAGTTAATCCACTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCA
131 AAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCA
* * *
10230687 TCATTTGGTCTAAAAAGTTTGTCATTTTGTAAACCAGTTTTGGCCTTTAAATAAAAAACTTATTT
196 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTT
* *
10230752 ATGTGAGAATTGTATCTCCTTGGTTATTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTC
261 ACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTC
* *
10230817 TTTTATAACTTAGGTTCCTTAAAGCATTCGAGACGATCCATTGCTTTGAGCAAATTTCCAAACAT
326 TTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACAT
10230882 TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTT-TCCATTTTGTAAACAAGTTTTGGA
391 TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGT-CATTTTGTAAACAAGTTTTGGA
*
10230946 CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
455 CTGTTAATTAATAACTTAGTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
*
10231011 TTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
520 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
* * * *
10231076 GTCAAAAACTTATTTACGTGAGAATTGATACTCTCTTGGTTCTTGGATGAACATCCAAACTTCTG
585 GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTG
10231141 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
650 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
* * * *
10231206 GCAATTTTTTCAACATCCCATGGTCGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
715 GCAATTTTTTGAACATCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
**
10231271 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACG--TGG----CAATTGGTTCTTGGACG
780 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGATTGGTTCTCTCTTGGTTCTTGGACG
*
10231330 AACTTTCGAACTAGTCAAAGACTTATTTACATTAGTACTGTTTCA
845 AACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
* * *
10231375 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCTC
1 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAAAAACTTATTTACGTAAGAATTATTTCTCTC
* *
10231440 TTGGTTCTTGGACAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
66 TTGGTTCTTGGACGACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
* *
10231505 AAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAATATTCCATGCTCCG-AAATCCCA
131 AAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCA
10231569 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTA-TT
196 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTT
* * * *
10231633 ACTTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTTAAACATTCACGAGTTC
261 ACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTC
* *
10231698 TTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAAAATTTCCAAACAT
326 TTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACAT
* *
10231763 TCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGAC
391 TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAC
* *
10231828 TGTTAATTAATAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
456 TGTTAATTAATAACTTAGTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAAC
* * * *
10231893 TTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTG
521 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
10231958 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTG-
586 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGA
* * * *
10232022 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATACATTCTTTCGAC
651 AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
*
10232087 CAATTTTTCGAACATCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
716 CAATTTTTTGAACATCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
10232152 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTG
781 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTAC---G--ATTGGTTCTCTCTTGGTTCTTG
* *
10232217 GACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
841 GACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
* *
10232266 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACATATTTACGTAAGAATTATTTCTCTC
1 CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAAAAACTTATTTACGTAAGAATTATTTCTCTC
*
10232331 TTGGTTCTTGGACGAACTTCCGAACTT
66 TTGGTTCTTGGACG-ACATCCGAACTT
10232358 GCCAAAAACT
Statistics
Matches: 1744, Mismatches: 106, Indels: 28
0.93 0.06 0.01
Matches are distributed among these distances:
880 158 0.09
881 367 0.21
882 67 0.04
883 235 0.13
887 9 0.01
888 721 0.41
889 44 0.03
891 132 0.08
892 11 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (889 bp):
CTCTTGGTTCTTTGACGAACTTCCGAACTAGTCAAAAACTTATTTACGTAAGAATTATTTCTCTC
TTGGTTCTTGGACGACATCCGAACTTTTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
AAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCA
TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTT
ACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTC
TTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACAT
TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAC
TGTTAATTAATAACTTAGTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGA
AACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
CAATTTTTTGAACATCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGATTGGTTCTCTCTTGGTTCTTGGACGA
ACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
Done.