Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 46 of 144
Found at i:10230820 original size:215 final size:216
Alignment explanation
Indices: 10230528--10231019 Score: 579
Period size: 215 Copynumber: 2.3 Consensus size: 216
10230518 ACTAGTCAAC
* * * *
10230528 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCGAACTTTTCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
* * * **
10230592 TTACGATTTCTTTTATAACTTCA-GTTCAAAAAAGTATTCAAGTTAATCCACTCCTTCT-AG-AA
66 TCACGAGTTCTTTTATAACTT-AGGTTCAAAAAAGCATTCAAGACAATCCACTCCTT-TGAGCAA
* * *
10230654 ATTTTTCGAACATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAAA-AGTTTGT-CATTTTG
129 A-TTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTGGTC-AAAATAGTTT-TCCATTTTG
* *
10230716 TAAACCAGTTTTGGCCT-TTAAATAAAA
190 TAAACAAGTTTTGGACTGTT-AATAAAA
* * * *
10230743 AACTTATTTATGTGAGAATTGTATCTC-CTTGGTTATTGGACGAACTTTCGAACTTGTCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
*** * * * *
10230807 TCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCGAGACGATCCATTGCTTTGAGCAAAT
66 TCACGAGTTCTTTTATAACTTAGGTTCAAAAAAGCATTCAAGACAATCCACTCCTTTGAGCAAAT
10230872 TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCCATTTTGTAAACA
131 TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCCATTTTGTAAACA
* *
10230937 AGTTTTGGACTGTTAATTAAT
196 AGTTTTGGACTGTTAATAAAA
* * * *
10230958 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAATTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10231020 AACTTATTTA
Statistics
Matches: 233, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
214 20 0.09
215 178 0.76
216 35 0.15
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TCACGAGTTCTTTTATAACTTAGGTTCAAAAAAGCATTCAAGACAATCCACTCCTTTGAGCAAAT
TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCCATTTTGTAAACA
AGTTTTGGACTGTTAATAAAA
Found at i:10231056 original size:62 final size:62
Alignment explanation
Indices: 10230958--10231137 Score: 297
Period size: 62 Copynumber: 2.9 Consensus size: 62
10230948 GTTAATTAAT
* * *
10230958 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAATTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10231020 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10231082 AACTTATTTACGTGAGAATTGATACTCTCTTGGTTCTTGGATGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10231138 CTGAAACTTT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10231420 original size:62 final size:62
Alignment explanation
Indices: 10231316--10231471 Score: 206
Period size: 62 Copynumber: 2.5 Consensus size: 62
10231306 TACGTGGCAA
* * * * * *
10231316 TTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATTAGTACTGTTTCACTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
* * * *
10231378 TTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
*
10231440 TTGGTTCTTGGAC-AACATCCGAACTTGTCAAA
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10231472 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
61 18 0.22
62 64 0.78
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (62 bp):
TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTCATTTACATAAGAACTGTTTCACTC
Found at i:10231825 original size:214 final size:215
Alignment explanation
Indices: 10231408--10231900 Score: 611
Period size: 213 Copynumber: 2.3 Consensus size: 215
10231398 CGAACTTGTC
* * * * *
10231408 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACATCCGAACTTGTCAAA
1 AAAAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * * * * **
10231472 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * * * * * *
10231537 ATTTTTCGAATATTCCATGCTCCGAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 AATTTCCAAACATTCCATGCTCAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
*
10231602 CAAGTTTTGGCCT-TTAAATT
196 CAAGTTTTGGACTGTT-AATT
* * * *
10231622 AAAAACTTA-TTAC-TTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTTAA
1 AAAAACTTAGTTACGTT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAA
** * *
10231684 ACATTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGGG
65 ACATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG
*
10231748 AAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGT
129 AAAATTTCCAAACATTCCATGC-TCAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGT
10231813 AAACAAGTTTTGGACTGTTAATT
193 AAACAAGTTTTGGACTGTTAATT
* * *
10231836 AATAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
10231901 GACTTATTTA
Statistics
Matches: 235, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
212 15 0.06
213 99 0.42
214 72 0.31
215 18 0.08
216 31 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
CATTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
AATTTCCAAACATTCCATGCTCAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10231942 original size:62 final size:62
Alignment explanation
Indices: 10231839--10232018 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10231829 GTTAATTAAT
* *
10231839 AACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10231901 GACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10231963 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10232019 CTGAACTTTT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10232258 original size:339 final size:338
Alignment explanation
Indices: 10231622--10232357 Score: 955
Period size: 339 Copynumber: 2.2 Consensus size: 338
10231612 CCTTTAAATT
* * * *
10231622 AAAAACTTA-TTACTTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT--TTAAA
* * * * *
10231685 CATTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAA
64 CATTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATACATTCCTTTGCGAA
* *
10231750 AATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAA
129 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGCCATTTTGTAA
* * * *
10231815 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGA
194 ACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10231880 CGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCCTGGACGA
259 CGAACTTCCAAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCCTGGACGA
10231945 ACTTCCAAACTTGTC
324 ACTTCCAAACTTGTC
* *
10231960 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT-TAAAC
* * * * * * *
10232025 TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATACATT-CTTT-CGACC
65 ATTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATACATTCCTTTGCGA--
* * * * * * * *
10232088 AATTTTTCGAACA-TCTCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
128 AAATTTCCAAACATTC-CATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGCCATTTTGT
* * *
10232152 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACG-TGGCAATTGGTTCTCTCTTGGTTCT
192 AAACAAGTTTCGG-ACTGTGAATTAAAAACTTAGTTACGTTAG-AATTGGTTCTCTCTTGGTTCT
* * *
10232215 TGGACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTG
255 TGGACGAACTTCCAAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCCTGG
*
10232280 ACGAACTTCCGAACTTGTC
320 ACGAACTTCCAAACTTGTC
* * *
10232299 AAAAACATATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10232358 GCCAAAAACT
Statistics
Matches: 345, Mismatches: 45, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
337 2 0.01
338 18 0.05
339 299 0.87
340 26 0.08
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTAAACA
TTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATACATTCCTTTGCGAAAA
TTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGCCATTTTGTAAAC
AAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCCTGGACGAAC
TTCCAAACTTGTC
Found at i:10232276 original size:62 final size:62
Alignment explanation
Indices: 10232175--10232419 Score: 339
Period size: 62 Copynumber: 4.0 Consensus size: 62
10232165 TCCTTGAATT
* * *
10232175 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
10232237 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
10232299 AAAAACATATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
10232361 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10232420 CGGATACTTT
Statistics
Matches: 158, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
62 157 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10232608 original size:401 final size:401
Alignment explanation
Indices: 10231858--10232758 Score: 1471
Period size: 401 Copynumber: 2.2 Consensus size: 401
10231848 ACGTTAGAAT
* * * * * *
10231858 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
* * *
10231923 TTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTC
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
* *
10231988 TCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAACTTTTACGATTTCTTTTATAACTTCGGTT
131 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGAACTTTTACGATTTCTTTTATAACTTCGGTT
* * *
10232053 CCTGAAAATATCCAGGATGATACATTCTTTCGACCAATTTTTCGAACATCTCATGCTCGGGAAAT
196 CCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTCCGAACATCCCATGCTCGGGAAAT
* * * *
10232118 CGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTT
261 CGCATAATTTGGTCGAAATAGTTTGTCTTTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACTT
* *
10232183 ATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATT
326 ATTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATT
10232248 TACATGAGTAC
391 TACATGAGTAC
* * *
10232259 TGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACATATTTACGTAAGAATTAT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
10232324 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
10232389 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGATACTTTTACGATTTCTTTTATAACTTCGGT
131 TCTCTTGGATCTTGGACGAACATCCGAACTTCGGA-ACTTTTACGATTTCTTTTATAACTTCGGT
* * *
10232454 TCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTCCGAACATCCCATGCTCGGGAAA
195 TCCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTCCGAACATCCCATGCTCGGGAAA
*
10232519 TCGCATAATTTGGTCGAAATAGTTTGTCTTTTTCTAAA-AAATTTCGGTCCTTGAAATAAAACCT
260 TCGCATAATTTGGTCGAAATAGTTTGTCTTTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACT
* *
10232583 TATTTGCGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTAT
325 TATTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTAT
*
10232648 TTTCATGAGTAC
390 TTACATGAGTAC
* * *
10232660 TATTTCACCCTTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGT
1 TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
* *
10232725 TTCTCTCTTGGTTCTTGGACGAACATCTGAACTT
66 TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10232759 TTCCAACTTT
Statistics
Matches: 461, Mismatches: 38, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
401 337 0.73
402 124 0.27
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (401 bp):
TGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTTGGATCTTGGACGAACATCCGAACTTCGGAACTTTTACGATTTCTTTTATAACTTCGGTT
CCTGAAAATATCCAAGATGATACATTCTTTCGACCAATTTTCCGAACATCCCATGCTCGGGAAAT
CGCATAATTTGGTCGAAATAGTTTGTCTTTTTCTAAACAAATTTCGGTCCTTGAAATAAAAACTT
ATTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATT
TACATGAGTAC
Found at i:10232680 original size:62 final size:62
Alignment explanation
Indices: 10232611--10232758 Score: 179
Period size: 62 Copynumber: 2.4 Consensus size: 62
10232601 TTCTCTCTTA
* * * * * *
10232611 GTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCCTTG
1 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
* * * * *
10232673 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
1 GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
* *
10232735 GTTCTTGGACGAACATCTGAACTT
1 GTTCTTGGACGAACTTCCGAACTT
10232759 TTCCAACTTT
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 73 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (62 bp):
GTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACATAAGAACTATTTCACCCTTG
Found at i:10232960 original size:339 final size:339
Alignment explanation
Indices: 10232266--10232979 Score: 909
Period size: 339 Copynumber: 2.1 Consensus size: 339
10232256 TACTGTTTCA
* * * * * *
10232266 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACATATTTACGTAAGAATTATTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
* *
10232331 TTGGTTCTTGGACGAACTTCCGAACTTGCCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
66 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
* **
10232396 GATCTTGGACGAACATCCGAACTTCGGATACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAA
131 GATCTTGGACGAACATCCGAACTTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * * ** *
10232461 AGTATCCAAGATGATCCATTCTTTCGACCAGTTTTCCGAACATCCCATGCTCGGGAAATCGCATA
196 AGTATCCAAGATAATCCATTCCTTCGACAAATTTTCCGAACATCCCATGCTCGAAAAATCCCATA
* * **
10232526 ATTTGGTCGAAATAGTTTGTCTTTTTCTAAAAAATTTCGGTCCTTGAAATAAAACCTTATTTGCG
261 ATTTGGTCGAAATAGTTTGTCATTTTCTAAAAAATTTCGGTCCTTGAAATAAAAACTTACATGCG
10232591 TGGCAATTAGTTCT
326 TGGCAATTAGTTCT
* * * * * *
10232605 CTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCC
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
10232670 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
66 TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
* *
10232735 GTTCTTGGACGAACATCTGAACTTTTC-CA-ACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
131 GATCTTGGACGAACATCCGAAC--TTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
* ** * * * * *
10232798 AAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
194 AAAGTATCCAAGATAATCCATTCCTTCGACAAATTTTCCGAACATCCCATGCTCGAAAAATCCCA
* * * * * *
10232863 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAAATTAAAAACTTACA
259 TAATTTGGTCGAAATAGTTTGTCATTTTCTAAA-AAATTTCGGTCCTTGAAA-TAAAAACTTACA
*
10232927 TGCGTGAG-AATT-GTATGT
322 TGCGTG-GCAATTAGT-TCT
* *
10232945 C-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10232980 CTTTCACGAG
Statistics
Matches: 321, Mismatches: 48, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
339 287 0.89
340 30 0.09
341 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (339 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACATATTTACATAAGAACTATTTCACCC
TTGGTTCTTGGACGAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
GATCTTGGACGAACATCCGAACTTCGCATACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
AGTATCCAAGATAATCCATTCCTTCGACAAATTTTCCGAACATCCCATGCTCGAAAAATCCCATA
ATTTGGTCGAAATAGTTTGTCATTTTCTAAAAAATTTCGGTCCTTGAAATAAAAACTTACATGCG
TGGCAATTAGTTCT
Found at i:10233102 original size:215 final size:216
Alignment explanation
Indices: 10232700--10233195 Score: 615
Period size: 215 Copynumber: 2.3 Consensus size: 216
10232690 CGAACTTGAC
** * * * *
10232700 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTTTCCA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * ** * * *
10232764 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGA
* * * * *
10232829 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAA
*
10232894 AACAAGTTTTGGCCT-TTAAATT
195 AACAAGTTTTGGACTGTTAAA-T
* * * * *
10232916 AAAAACTTACATGCGTGAGAATTGTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10232980 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAG-A
10233045 AA-TTTCCAAACATTCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTTGA
130 AATTTTCCAAACATTCCATGCTCGA-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
10233108 AAACAAGTTTTGGACTGTTAAAT
194 AAACAAGTTTTGGACTGTTAAAT
* ** * * *
10233131 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10233196 AACATATTTA
Statistics
Matches: 236, Mismatches: 39, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
215 168 0.71
216 68 0.29
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTACATACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTTGGACTGTTAAAT
Found at i:10233238 original size:62 final size:62
Alignment explanation
Indices: 10233141--10233313 Score: 301
Period size: 62 Copynumber: 2.8 Consensus size: 62
10233131 AATAACTTAG
*
10233141 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
**
10233203 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10233265 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10233314 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10233426 original size:555 final size:555
Alignment explanation
Indices: 10232361--10233528 Score: 1446
Period size: 555 Copynumber: 2.1 Consensus size: 555
10232351 CGAACTTGCC
** * * * * *
10232361 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACT--TCGG
1 AAAAACTTACATACGTG-GCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTC--
* * * * * *
10232423 ATACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
63 AAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGA
** * * * * *
10232488 CCAGTTTTCCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCGAAATAGTTTGTCTTTTTC
128 CCAAATTTCCAAACATCCCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTC
* * * *
10232553 TAAAAAATTTCGGTCCTTGAAATAAAACCTTATTTGCGTGGCAATTAGTTCTCTCTTAGTTCTTG
193 GAAAAAATTTCGGTACTTGAAATAAAACCTTAGTTACGTGGCAATTAGTTCTCTCTTAGTTCTTG
* * * * * *
10232618 GACGAACTTTCGAACTTGTCAAAGACTTATTTTCATGAGTACTATTTCACCCTTGGTTCTTGGAC
258 GACGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTCTTGGAC
*
10232683 GAACTTCCGAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
323 GAACTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * ** *
10232748 CATCTGAACTTTTCCAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTA
388 CATCCGAACTTCTCAAACTTTTACGATTTCTTTCATAACTTCGGTTCCAAAAATTATCCAAGATA
* * * *
10232813 ATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
453 ATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAAT
10232878 AGTTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAAATT
518 AGTTTGTCATTTTGTAAACAAGTTTTGGTCC-TTAAATT
* *
10232916 AAAAACTTACATGCGTGAG-AATT-GTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCA
1 AAAAACTTACATACGTG-GCAATTGGT-TCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTCA
* * *
10232978 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAG
64 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGAC
* *
10233043 CAAATTTCCAAACATTCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTT-
129 CAAATTTCCAAACATCCCATGCTCG-GAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTC
* *
10233106 GAAAACAAGTTTTGG-ACTGTTAAATAATAA-CTTAGTTACGTGAG-AATT-GTTTCTCTCTTAG
193 GAAAA-AA-TTTCGGTACT-TGAAATAA-AACCTTAGTTACGTG-GCAATTAG-TTCTCTCTTAG
* * * * *
10233167 TTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTC
252 TTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTC
* * *
10233232 TTGGACGAACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
317 TTGGACGAACTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
* * *
10233297 GACGAACATCCGAACTTCTGAAACTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAAA-TATC
382 GACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTTCATAACTTCGGTTCC-AAAAATTATC
* * * * ** *
10233361 CAGGATGATCCATTCTTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGG
446 CAAGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGG
* *
10233426 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATT
511 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
** *
10233471 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACT
1 AAAAACTTACATACGTGGCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACT
10233529 TCTCAAAGAC
Statistics
Matches: 522, Mismatches: 76, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
553 4 0.01
554 135 0.26
555 344 0.66
556 39 0.07
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
AAAAACTTACATACGTGGCAATTGGTTCTCTCTTGGTTATTGGACGAACTTTCGAACTGGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGATGATCCATTCCTTCGACCA
AATTTCCAAACATCCCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTCGAA
AAAATTTCGGTACTTGAAATAAAACCTTAGTTACGTGGCAATTAGTTCTCTCTTAGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTATTTCACCCTTGGTTCTTGGACGAA
CTTCCAAACTTGACAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTCTCAAACTTTTACGATTTCTTTCATAACTTCGGTTCCAAAAATTATCCAAGATAATC
CATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:10233581 original size:340 final size:338
Alignment explanation
Indices: 10232929--10233997 Score: 1235
Period size: 340 Copynumber: 3.2 Consensus size: 338
10232919 AACTTACATG
* * * * * * * * *
10232929 CGTGAGAATTGTATGTC-CTTGGTTATTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTC
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
* * ** * * * *
10232993 TTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAAATTTCCAAACAT
66 TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
* * *
10233058 TCCATGCTCGAGAAAAT-ACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGA
131 TCCATGCTCG-GAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGA
* * * * * *
10233122 CTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAA
195 CT-TGAATTAAAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAA
* *
10233187 CTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
258 CTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTT
*
10233252 GTCAAAAATTTATTTA
323 GTCAAAAACTTATTTA
* *
10233268 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACTATTTC
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
* * * * *
10233333 TTTCATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATTCTTTCGACCAATTTTTCGAACAT
66 TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
* * * * *
10233398 CCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTC
131 TCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG-A
* *
10233463 CTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC
195 CTTGAATTAAAAACTTATTTACGTGG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAAC
* * * * * * * *
10233528 TTCTCAAAGACTTATTTACATGA-ATACTATTTCACTCTTAGTTCTTTGACGAACTTCCGAACTT
259 TTGTCAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTT
10233592 GTCAAAAACTTATTTA
323 GTCAAAAACTTATTTA
* *
10233608 CGTAAGAATTG--TCTCTCTTGGTTCTTGGACG-ACATCTGAACTTGTCAAACTTTTA-TGATTT
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACT-ATTT
* * *
10233669 CTTTTATAACTTCGGTTCC-AAAAAGTATTCAAGTTAATCCATTCCTTT--ACAAATTTTTCAAA
65 CTTTTATAACTTCGGTTCCTAAAAA-TATTCAAGATGATCCATT-CTTTCGACCAATTTTTCAAA
* * * ** *
10233731 CATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTCTCTCTTAGTTCTTGGACGAAC
128 CATTCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCT-TT--TT-GTAAAC-AAG
**** * * * *
10233796 TTCCAAACTTG--TCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACAAACT
188 TTTTGGACTTGAATTAAAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
10233859 TCCAACCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACTTCC
252 TTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCC
*
10233924 AAACTTGTCAAACACTTATTTA
317 AAACTTGTCAAAAACTTATTTA
* *
10233946 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10233998 AACTTATTTA
Statistics
Matches: 614, Mismatches: 98, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
336 59 0.10
337 59 0.10
338 152 0.25
339 25 0.04
340 298 0.49
341 21 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (338 bp):
CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTATTTC
TTTTATAACTTCGGTTCCTAAAAATATTCAAGATGATCCATTCTTTCGACCAATTTTTCAAACAT
TCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAC
TTGAATTAAAAACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTT
GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACTTCCAAACTTGTC
AAAAACTTATTTA
Found at i:10233848 original size:62 final size:62
Alignment explanation
Indices: 10233770--10234421 Score: 1053
Period size: 62 Copynumber: 10.6 Consensus size: 62
10233760 GGTCTAAATA
* *
10233770 GTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10233832 GTTTCTCTGTTGGTTCTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10233894 GTTTCTCTCTTGGTTCTTTGATGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10233956 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10234018 GTTTC-CT-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10234078 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10234140 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10234202 GTTTCTCTCTTGGTTCTAGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
10234264 GTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10234324 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATA-TTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA-ACTTATTTACGTGAGAATT
* * * *
10234386 ATTTCTTTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10234422 CTGAAACTTT
Statistics
Matches: 547, Mismatches: 38, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
60 114 0.21
61 6 0.01
62 426 0.78
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10234111 original size:184 final size:185
Alignment explanation
Indices: 10233770--10234421 Score: 1037
Period size: 184 Copynumber: 3.5 Consensus size: 185
10233760 GGTCTAAATA
* *
10233770 GTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
* * *
10233835 TCTCTGTTGGTTCTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
66 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
*
10233900 CTCTTGGTTCTTTGA-TGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
131 CTCTTGGTTCTTGGACT-AACTTCCAAACTTGTCAAA-ACTTATTTACGTGAGAATT
*
10233956 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
10234021 TC-CT-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
66 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
* *
10234084 CTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
131 CTCTTGGTTCTTGGACTAACTTCCAAACTTGTCAAAA-CTTATTTACGTGAGAATT
*
10234140 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
* *
10234205 TCTCTCTTGGTTCTAGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCT
66 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
*
10234270 -T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
131 CTCTTGGTTCTTGGACTAACTTCCAAACTTGTC-AAAACTTATTTACGTGAGAATT
* * * *
10234324 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATA-TTATTTACGTGAGAATTAT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA-ACTTATTTACGTGAGAATTGT
* * *
10234388 TTCTTTCTTGGTTCTTGGACGAACATCCGAACTT
65 TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10234422 CTGAAACTTT
Statistics
Matches: 436, Mismatches: 24, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
183 1 0.00
184 303 0.69
185 11 0.03
186 121 0.28
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (185 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTT
TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
CTCTTGGTTCTTGGACTAACTTCCAAACTTGTCAAAACTTATTTACGTGAGAATT
Found at i:10234216 original size:246 final size:246
Alignment explanation
Indices: 10233782--10234421 Score: 1118
Period size: 246 Copynumber: 2.6 Consensus size: 246
10233772 TTCTCTCTTA
* * *
10233782 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * * *
10233847 CTTGGACAAACTTCCAACCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
10233912 TGATGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
131 GGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGA
* *
10233977 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGCATTGTTTCCTTTG
196 CGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
10234028 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
10234093 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10234158 GGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGA
131 GGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGA
*
10234223 CGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCTTTTG
196 CGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
10234274 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
* * *
10234339 CTTGGACTAACATCCAAACTTGTCAAAATATTATTTACGTGAGAATTATTTCTTTCTTGGTTCTT
66 CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* *
10234404 GGACGAACATCCGAACTT
131 GGACGAACTTCCAAACTT
10234422 CTGAAACTTT
Statistics
Matches: 376, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
246 376 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (246 bp):
GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATT
CTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
GGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGA
CGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCCTTTG
Found at i:10234675 original size:62 final size:62
Alignment explanation
Indices: 10234608--10234766 Score: 176
Period size: 62 Copynumber: 2.6 Consensus size: 62
10234598 AATTGGTTCT
* * * * *
10234608 CTCTTGGTTCTTGGACGAACTTTCGAACTTATCAAAGATTTATTTACACGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
* * * * *
10234670 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAAACTTATTTACGCAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
* * * * *
10234732 CACTTGGTTCCTGGACG-ACATCCTAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAA
10234767 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 16 0.20
62 66 0.80
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACACAAGAACTGTTTCA
Found at i:10234895 original size:339 final size:338
Alignment explanation
Indices: 10234241--10234954 Score: 911
Period size: 339 Copynumber: 2.1 Consensus size: 338
10234231 CAAACTTATC
* *
10234241 AAAAACTTATTTACGTGAGAATTGTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAA
** * * *
10234305 ACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATAT
66 ACTTATTTACACGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATAT
** ** * *
10234370 TATTTACGTGAGAATTATTTCTTTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
131 TATTTACGCAAGAATTATTTCTCACTTGGTTCCTGGACGAACATCCGAACTTCTCAAACTTTTAC
** * *
10234435 GATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGGTGATCCATTCTTTCGACCAATTTTTT
196 GATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGGTAATCCATTCTTTCGA-CAATTTTTC
* * * *
10234500 TAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
260 GAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
10234565 TCGATCC-ATGAATT
325 TCG-GCCTATAAATT
* *
10234579 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTATCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAA
* * * * * * *
10234643 AGATTTATTTACACGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTCAAAA-
64 AAACTTATTTACACGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAAT
* * *
10234707 ACTTATTTACGCAAGAATTGTTTCTCACTTGGTTCCTGGACG-ACATCCTAACTTGTCAAACTTT
129 A-TTATTTACGCAAGAATTATTTCTCACTTGGTTCCTGGACGAACATCCGAACTTCTCAAACTTT
* * *
10234771 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTCGA-AATT
193 TACGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGGTAATCCATT-CTT-TCGACAATT
* * *
10234835 TTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
256 TTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
* *
10234900 AGTTTTGGCCTTTAAATT
321 AGTTTCGGCCTATAAATT
*
10234918 GAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTT
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTT
10234955 GTTGTTGGAT
Statistics
Matches: 323, Mismatches: 44, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
337 1 0.00
338 32 0.10
339 164 0.51
340 122 0.38
341 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAA
ACTTATTTACACGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATAT
TATTTACGCAAGAATTATTTCTCACTTGGTTCCTGGACGAACATCCGAACTTCTCAAACTTTTAC
GATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGGTAATCCATTCTTTCGACAATTTTTCG
AACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
CGGCCTATAAATT
Found at i:10235087 original size:218 final size:216
Alignment explanation
Indices: 10234706--10235200 Score: 572
Period size: 218 Copynumber: 2.3 Consensus size: 216
10234696 ACTTGTCAAA
* ** * * * * * * *
10234706 AACTTATTTACGCAAGAATTGTTTCTCACTTGGTTCCTGGACG-ACATCCTAACTTGTCAAACTT
1 AACTTAGTTACGTGAGAATTGTATCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAACTC
* * * * * *
10234770 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTCGAAATT
66 TCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCGAAAAT
* * ** * * *
10234835 TTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
131 TTCCAAACAGACCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA
*
10234900 AGTTTTGGCCT-TTAAATTGAA-
196 AGTTTTGGACTGTT-AATT-AAT
* * * * *
10234921 AACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTATCTCTC-T--TAGTTCTTGGACGAACTTCCAAACTTGTCAAA
** *
10234985 CTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATATTCCATTCCTT-T-GAA
63 CTCTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCG-A
10235048 CAAATTTCCAAACAGACCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
127 -AAATTTCCAAACAGACCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10235112 TAAACAAGTTTTGGACTGTTAATTAAT
190 TAAACAAGTTTTGGACTGTTAATTAAT
*
10235139 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTATCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10235201 AACATATTTA
Statistics
Matches: 236, Mismatches: 34, Indels: 19
0.82 0.12 0.07
Matches are distributed among these distances:
214 1 0.00
215 25 0.11
216 29 0.12
217 15 0.06
218 163 0.69
219 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
AACTTAGTTACGTGAGAATTGTATCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAACTC
TCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTCGAAAAT
TTCCAAACAGACCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGACTGTTAATTAAT
Found at i:10235248 original size:62 final size:62
Alignment explanation
Indices: 10235146--10235318 Score: 292
Period size: 62 Copynumber: 2.8 Consensus size: 62
10235136 AATAACTTAG
*
10235146 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10235208 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10235270 TTACGTGAGAATTGATTCCCTCTTGGTTCTTGGACGAACATCCAAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10235319 TTGAAACTTT
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10235571 original size:62 final size:62
Alignment explanation
Indices: 10235476--10235720 Score: 323
Period size: 62 Copynumber: 4.0 Consensus size: 62
10235466 TCCTTGAATT
* * *
10235476 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * *
10235538 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
10235600 AAAAACTTATTTACGTAAGAATTATATT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
10235662 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
10235721 CTGAAACTTT
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 2 0.01
62 153 0.97
63 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10235598 original size:340 final size:341
Alignment explanation
Indices: 10234919--10235664 Score: 914
Period size: 340 Copynumber: 2.2 Consensus size: 341
10234909 CTTTAAATTG
* * * *
10234919 AAAACTTATTTACGTGAGAATTG-TATCTCCT-TGGTTGTTGTTGGATGAACTTTCAAACTTGTC
1 AAAACTTATTTACGTGAGAATTGATATC-CCTCT--TGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10234982 AAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATATTCCATTCCTTTGA
63 AAACTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGATATTCCATTCCTTTGA
*
10235047 ACAAATTTCCAAACAGACCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 ACAAATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
10235112 TAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
193 TAAACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTT
* * *
10235177 GGACGAACTTCCAAACTTGTCAAAAACATATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
258 GGACAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGA
10235242 CGAACTTCCAAACTTGTCA
323 CGAACTTCCAAACTTGTCA
* * *
10235261 AAAACTTATTTACGTGAGAATTGAT-TCCCTCTTGGTTCTTGGACGAACATCCAAACTTTTGAAA
1 AAAACTTATTTACGTGAGAATTGATATCCCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * * *
10235325 CTTTTACGATTTCTTTTATAACTCCGGTTCCTGAAAATATCCAGGATGA-TCCATT-CTTTCGAC
66 CTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGAT-ATTCCATTCCTTT-GAA
* * * ** * * * *
10235388 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 CAAATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGT
* * *
10235453 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAATTAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
*** * * * *
10235516 TGGACAAACTTTTGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTG
257 TGGACAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGG
* *
10235581 ACGAACTTTCGAACTTGTCA
322 ACGAACTTCCAAACTTGTCA
* ** *
10235601 AAAACTTATTTACGTAAGAATT-ATATTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGATATCCCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10235665 AACTTATTTA
Statistics
Matches: 343, Mismatches: 54, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
339 7 0.02
340 303 0.88
341 6 0.02
342 26 0.08
343 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (341 bp):
AAAACTTATTTACGTGAGAATTGATATCCCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTCTCACGAGTTCTTTTATAACTCAGGTTCCTGAAAACATCCAAGATATTCCATTCCTTTGAACA
AATTTCCAAACAGACCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CAAACTTCCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTCA
Found at i:10235922 original size:402 final size:402
Alignment explanation
Indices: 10235140--10236066 Score: 1496
Period size: 402 Copynumber: 2.3 Consensus size: 402
10235130 TTAATTAATA
* * * * * * * *
10235140 ACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACA
1 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* * *
10235205 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
66 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
10235270 TTACGTGAGAATTGATTCCCTCTTGGTTCTTGGACGAACATCCAAACTTTTGAAACTTTTACGAT
131 TTACGTGAGAATTGATTCCCTCTTGGATCTTGGACGAACATCCAAACTTCTGAAACTTTTACGAT
* *
10235335 TTCTTTTATAACTCCGGTTCCTGAAAATATCCAGGATGATCCATTCTTTCGACCAATTTTTCGAA
196 TTCTTTTATAACTCCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAACTTTTCGAA
* *
10235400 CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCG
261 CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTCG
* * *
10235465 GTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTTG
326 GTCCTTGAAATAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGGACAAACTTTCG
10235530 AACTTGTCAAAG
391 AACTTGTCAAAG
* *
10235542 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAAAACT
1 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
*
10235607 TATTTACGTAAGAATTATATT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
66 TATTTACGTAAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
* * *
10235671 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
130 TTTACGTGAGAATTGATTCCCTCTTGGATCTTGGACGAACATCCAAACTTCTGAAACTTTTACGA
* * * *
10235736 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATTCATTCTTTCGACCAGCTTTTCGA
195 TTTCTTTTATAACTCCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAACTTTTCGA
10235801 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTC
260 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTC
* *
10235866 GGTCCTTGAAATAAAACCTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGGACGAACTTTC
325 GGTCCTTGAAATAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGGACAAACTTTC
10235931 GAACTTGTCAAAG
390 GAACTTGTCAAAG
* ** *
10235944 ACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATTAACTTCCGAACTTGTTAAAAACT
1 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* *
10236009 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
66 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10236067 CTTTTACGAT
Statistics
Matches: 482, Mismatches: 41, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
401 2 0.00
402 478 0.99
403 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (402 bp):
ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
TTACGTGAGAATTGATTCCCTCTTGGATCTTGGACGAACATCCAAACTTCTGAAACTTTTACGAT
TTCTTTTATAACTCCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAACTTTTCGAA
CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTCG
GTCCTTGAAATAAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGGACAAACTTTCG
AACTTGTCAAAG
Found at i:10235976 original size:62 final size:62
Alignment explanation
Indices: 10235909--10236066 Score: 208
Period size: 62 Copynumber: 2.5 Consensus size: 62
10235899 TTGGTTCTCC
* * * * *
10235909 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
* * * * * *
10235971 CTTGGTTCTTGGATTAACTTCCGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
*
10236033 CTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
10236067 CTTTTACGAT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 82 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACT
Found at i:10236173 original size:340 final size:339
Alignment explanation
Indices: 10235542--10236281 Score: 950
Period size: 340 Copynumber: 2.2 Consensus size: 339
10235532 CTTGTCAAAG
* * * * * *
10235542 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACT
* * *
10235607 TATTTACGTAAGAATTATATTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
65 TATTTACATAAGAACTATATTACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
10235672 TTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGAT
130 TTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTACGAT
* ** * * * * * *
10235737 TTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATTCATTCTTTCGACCAGCTTTTCGAA
195 TTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTTCGAA
* * *
10235802 CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAAAAAGTTTCG
260 CATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGTTTCG
10235867 GTCCTTGAAA-T-AAA
325 G-CCTTGAAATTGAAA
*
10235881 ACCTTATTTACGTG-GCAATTGGT-TCTCCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAG
1 A-CTTATTTACGTGAG-AATT-GTATCT-CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * ** *
10235944 ACTTATTTACATGAGTACTAT-TTCACTCTTGGTTCTTGGATTAACTTCCGAACTTGTTAAAAAC
62 ACTTATTTACATAAGAACTATATT-ACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
10236008 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
126 TTATTTACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* * * * * * *
10236073 CGATTTCTTTTATAATTTCAGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAAATTTTT
191 CGATTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTT
* * * *
10236138 CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
256 CGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGT
* *
10236203 TTTGGCCTTTAAATTGAAA
321 TTCGGCCTTGAAATTGAAA
* **
10236222 ACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGGTGAACTTTCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10236282 CTTTCACGAG
Statistics
Matches: 345, Mismatches: 47, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
339 45 0.13
340 292 0.85
341 8 0.02
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (339 bp):
ACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTT
ATTTACATAAGAACTATATTACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTCAAACTTTTACGATT
TCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGATAATCCATTCCTTCGACAAACTTTTCGAAC
ATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTCTAAAAAAGTTTCGG
CCTTGAAATTGAAA
Found at i:10236399 original size:214 final size:216
Alignment explanation
Indices: 10236003--10236496 Score: 545
Period size: 215 Copynumber: 2.3 Consensus size: 216
10235993 GAACTTGTTA
*
10236003 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
* * * * * * *
10236068 TTTTACGATTTCTTTTATAATTTCAGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGTAAATCCAATCCTTCTAGAAA
** * * * *
10236133 TTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 AATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
10236198 CAAGTTTTGGCCTTTAAATTG
196 CAAGTTTTGGCCTTTAAATTG
* * * * *
10236219 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGGTGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
** **
10236283 TTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAATCATCCAAG-AAGATCCAATCCTT-T-GA
66 TTTCACGAGTTCTTTTATAACTTCA-GTTCCAAAAAGAATCCAAGTAA-ATCCAATCCTTCTAGA
*
10236344 ACAAATTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 A-AAATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
**
10236408 TAAACAAGTTTTGGAATGTT-AATT-
192 TAAACAAGTTTTGGCCT-TTAAATTG
* * * * * * * * * * *
10236432 AATTACTTAGTTACGTGAGAAATGTTTCTCTCTTAGTTCTAGGACGAACTTCCAAATTTGTCAAA
1 AA-AACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
10236497 AACTTATTTA
Statistics
Matches: 233, Mismatches: 38, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
213 7 0.03
214 97 0.42
215 102 0.44
216 27 0.12
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGAATCCAAGTAAATCCAATCCTTCTAGAAA
AATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCTTTAAATTG
Found at i:10236533 original size:62 final size:62
Alignment explanation
Indices: 10236436--10236800 Score: 534
Period size: 62 Copynumber: 5.9 Consensus size: 62
10236426 TTAATTAATT
* * * * *
10236436 ACTTAGTTACGTGAGAAATGTTTCTCTCTTAGTTCTAGGACGAACTTCCAAATTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* *
10236498 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* *
10236560 ACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAACGTCCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* * *
10236622 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACCTCCGAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
*
10236684 ACTTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC-AAA
1 AC-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
* * * ** * *
10236746 ACTTATTTACGTGAGAATTGTTTTTCCCTTGGATCTTTTACGAACATCCGAACTT
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10236801 CTGAAACTTT
Statistics
Matches: 278, Mismatches: 24, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
61 47 0.17
62 178 0.64
63 53 0.19
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
Found at i:10237062 original size:62 final size:62
Alignment explanation
Indices: 10236987--10237146 Score: 221
Period size: 62 Copynumber: 2.6 Consensus size: 62
10236977 AATTGGTTCT
* * * * *
10236987 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAGACTTATATACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATATACATAAGAACTATTTCA
* * * *
10237049 CTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATATACATAAGAACTATTTCA
* *
10237111 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
10237147 CATTTACGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAACTTATATACATAAGAACTATTTCA
Found at i:10237253 original size:340 final size:338
Alignment explanation
Indices: 10236618--10237418 Score: 1135
Period size: 340 Copynumber: 2.4 Consensus size: 338
10236608 CAAACTTGTC
*
10236618 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACCTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAA-CTTCGAACTTGTCAAA
* *
10236683 AACTTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAC
65 AAC-TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAC
* * * ** * *
10236748 TTATTTACGTGAGAATTGTTTTTCCCTTGGATCTTTTACGAACATCCGAACTTCTGAAACTTTTA
129 TTATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTCAAACATTTA
* * *
10236813 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAATTTT
194 CGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGACCAAATTTT
* ** * * *
10236878 CTAACATCCTATGCTCGGCAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAAACAAGT
259 CGAACATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGT
10236943 TTTGGCCTTTAAATT
324 TTTGGCCTTTAAATT
*
10236958 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGA-TGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACT-AAC-TTCGAACTTGTCA
* * * * * * *
10237021 AAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAA
63 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AAA
* * *
10237086 ACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATT
127 ACTTATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTCAAACATT
* * * *
10237151 TACGATTTCTTTTATAACTTCGGTTCC-AAAACGTATTCAAGTTAATCCATTCCTTCTA-GAAAG
192 TACGATTTCTTTTATAACTTCGGTTCCTAAAA-GTATCCAAGATAATCCATTCCTTCGACCAAA-
*
10237214 TTTTCGAACATTCC-ATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAAA
255 TTTTCGAACA-TCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAA
10237278 CAAGTTTTGGCCTTTAAATT
319 CAAGTTTTGGCCTTTAAATT
* *
10237298 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTC-GAACTTGTCAAA
*
10237363 AACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
65 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
10237419 CTGAAACTTT
Statistics
Matches: 405, Mismatches: 46, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
339 59 0.15
340 341 0.84
341 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCGAACTTGTCAAAA
ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAACTT
ATTTACGTAAGAATTATTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTCAAACATTTACG
ATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATAATCCATTCCTTCGACCAAATTTTCG
AACATCCTATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTT
TGGCCTTTAAATT
Found at i:10237395 original size:62 final size:62
Alignment explanation
Indices: 10237298--10237418 Score: 215
Period size: 62 Copynumber: 2.0 Consensus size: 62
10237288 CCTTTAAATT
* *
10237298 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
*
10237360 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
10237419 CTGAAACTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10237531 original size:278 final size:277
Alignment explanation
Indices: 10237024--10237708 Score: 833
Period size: 278 Copynumber: 2.5 Consensus size: 277
10237014 CTTGTCAAAG
* * * * *
10237024 ACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGA-TGAACTTCCGAACTTGTCAAAAAC
1 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AAC-TCTGAACTTGTCAAAAAC
* * * *
10237088 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTA
64 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACATTTA
* *
10237153 CGATTTCTTTTATAACTTCGGTTCCAAAACGTATTCAAGTTAATCCATTCCTTCTAGAAAGTTTT
129 CGATTTCTTTTATAACTTCGATTCCAAAACGTATTCAAGATAATCCATTCCTTCTAGAAAGTTTT
* *
10237218 CGAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGT
194 CGAACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGT
*
10237283 TTTGG-CCTTTAAATTAAAA
259 TTCGGTCC-TTAAATTAAAA
10237302 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAAACT
1 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAAC-TCTGAACTTGTCAAAAACT
* * *
10237367 TATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
65 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACATTTAC
* * * * * *
10237432 GATTTCTTTTATAACTTCGATTCCTGAAA-GTA-TCTAAGATGATCCATT-CTTTTGGCCAATTT
130 GATTTCTTTTATAACTTCGATTCC-AAAACGTATTC-AAGATAATCCATTCCTTCTAG-AAAGTT
* * * * * * *
10237494 TTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAATAA
192 TTCGAACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAA
* *
10237559 GTTTCGGTCCTTGAATTGAAA
257 GTTTCGGTCCTTAAATTAAAA
* * * * * * * *
10237580 ACTTATTCACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAGCTTTCGAACTTGTCAAAGAC
1 ACTTATTTACATGAG-AATTGTTTCTCTCTTGGTTCTTGGACTAACTCT-GAACTTGTCAAAAAC
* * * * * *
10237644 TTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTA
64 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACATTTA
10237709 TTTACGTAAG
Statistics
Matches: 351, Mismatches: 49, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
277 10 0.03
278 335 0.95
279 6 0.02
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (277 bp):
ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTCTGAACTTGTCAAAAACTT
ATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACATTTACG
ATTTCTTTTATAACTTCGATTCCAAAACGTATTCAAGATAATCCATTCCTTCTAGAAAGTTTTCG
AACATCCCATGCTCGAAAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTT
CGGTCCTTAAATTAAAA
Found at i:10237648 original size:340 final size:339
Alignment explanation
Indices: 10237302--10237979 Score: 924
Period size: 340 Copynumber: 2.0 Consensus size: 339
10237292 TAAATTAAAA
* * * *
10237302 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAAACT
1 ACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
* * *
10237367 TATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
66 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTAC
* ** * * * *
10237432 GATTTCTTTTATAACTTCGATTCCTGAAAGTA-TCTAAGATGATCCATT-CTTTTGGCCAA-TTT
131 GATTTCTTTTATAACTTCG-GTCCAAAAAGTATTC-AAGATAATCCATTCCTTCTAG-AAATTTT
* * * *
10237494 TTCGAACATCCCATTCTC-GAGAAAT-CGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAAT
193 TTCGAACATCCCATGCTCAGA-AAATAC-CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
10237557 AAGTTTCGGTCCTTG-AATTGAAA-ACTTATTCACCTG-GCAATTGGTA-CTCTCTTGGTTCTTG
256 AAGTTTCGG-CCTTGAAATT-AAAGACTTATTCACCTGAG-AATT-GTATCTC-CTTGGTTCTTG
*
10237618 GACGAGCTTTCGAACTTGTCAAAG
316 GACGAACTTTCGAACTTGTCAAAG
* * *
10237642 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATT
1 ACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
*
10237707 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
66 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTAC
*
10237772 GATTTCTTTTATAACTTCGGTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTC
131 GATTTCTTTTATAACTTCGGTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTC
* * *
10237837 GAACATTCCATGCTCAGAAAATACCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
196 GAACATCCCATGCTCAGAAAATACCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * * *
10237902 TTGGCCTTGAAATTAAAGACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTT
261 TCGGCCTTGAAATTAAAGACTTATTCACCTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTT
10237967 CGAACTTGTCAAA
326 CGAACTTGTCAAA
10237980 CTTTCACAAG
Statistics
Matches: 298, Mismatches: 31, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
339 65 0.22
340 229 0.77
341 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (339 bp):
ACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTC
GAACATCCCATGCTCAGAAAATACCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TCGGCCTTGAAATTAAAGACTTATTCACCTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTT
CGAACTTGTCAAAG
Found at i:10237671 original size:62 final size:62
Alignment explanation
Indices: 10237605--10237764 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10237595 AATTGGTACT
* * * * *
10237605 CTCTTGGTTCTTGGACGAGCTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10237667 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10237729 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10237765 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10237869 original size:618 final size:618
Alignment explanation
Indices: 10236680--10237979 Score: 2094
Period size: 618 Copynumber: 2.1 Consensus size: 618
10236670 CGAACTTGTC
**
10236680 AAAAACTTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC-A
1 AAAAAC-TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAA
* **
10236744 AAACTTATTTACGTGAGAATTGTTTTTCCCTTGGATCTTTTACGAACATCCGAACTTCTGAAACT
65 AAACTTATTTACGTGAGAATTGTTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTGAAACT
*
10236809 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAA
130 TTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAA
* *
10236874 TTTTCTAACATCCTATGCTCGGCAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAAAC
195 TTTTCGAACATCCCATGCTCGGCAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAAAC
* * * * *
10236939 AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATG
260 AAGTTTCGGCCTTTAAATTAAAAACTTATTCACCTGGCAATTGGTACTCTCTTGGTTCTTGGACG
*
10237004 AACTTTCGAACTTGTCAAAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAAC
325 AACTTTCGAACTTGTCAAAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC
10237069 TTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
390 TTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
*
10237134 CGAACTTGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCAAAACGTATTCAAGTTAATCC
455 CGAACTTGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCC
10237199 ATTCCTTCTAGAAAGTTTTCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTT
520 ATTCCTTCTAGAAAGTTTTCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTT
*
10237264 TGTCATTTTGAAAACAAGTTTTGGCCTTTAAATT
585 TGTCATTTTGAAAACAAGTTTTGGCCTTGAAATT
* *
10237298 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
* * *
10237363 AACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTT
* * * *
10237428 TTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCTAAGATGATCCATTCTTTTGGCCAATT
131 TTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAAT
* * * *
10237493 TTTCGAACATCCCATTCTCGAG-AAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAAT
196 TTTCGAACATCCCATGCTCG-GCAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAAAC
* *
10237557 AAGTTTCGGTCC-TTGAATTGAAAACTTATTCACCTGGCAATTGGTACTCTCTTGGTTCTTGGAC
260 AAGTTTCGG-CCTTTAAATTAAAAACTTATTCACCTGGCAATTGGTACTCTCTTGGTTCTTGGAC
* *
10237621 GAGCTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAA
324 GAACTTTCGAACTTGTCAAAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAA
* *
10237686 CTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
389 CTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
*
10237751 CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG-TCCAAAAAGTATTCAAGTTAATC
454 CCGAACTTGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATC
* *
10237815 CATTCCTTCTAGAAATTTTTTCGAACATTCCATGCTC-AGAAAAT-ACCTTCATTTGGTCTAAAT
519 CATTCCTTCTAGAAA-GTTTTCGAACATTCCATGCTCGA-AAAATCA-CATCATTTGGTCTAAAT
*
10237878 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTGAAATT
581 AGTTTGTCATTTTGAAAACAAGTTTTGGCCTTGAAATT
* * * *
10237916 AAAGACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAAC-TTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCT-GAACTTGTCAA
10237979 A
65 A
10237980 CTTTCACAAG
Statistics
Matches: 630, Mismatches: 45, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
616 2 0.00
617 119 0.19
618 506 0.80
619 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (618 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCCCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTT
TTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAAAT
TTTCGAACATCCCATGCTCGGCAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAAACA
AGTTTCGGCCTTTAAATTAAAAACTTATTCACCTGGCAATTGGTACTCTCTTGGTTCTTGGACGA
ACTTTCGAACTTGTCAAAGACTTATATACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACT
TCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCC
GAACTTGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCA
TTCCTTCTAGAAAGTTTTCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTT
GTCATTTTGAAAACAAGTTTTGGCCTTGAAATT
Found at i:10238086 original size:215 final size:216
Alignment explanation
Indices: 10237706--10238195 Score: 625
Period size: 215 Copynumber: 2.3 Consensus size: 216
10237696 TGTCAAAAAT
* * *
10237706 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
* * * * ** * *
10237771 CGATTTCTTTTATAACTTCGGTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTT
66 CAAGTTCTTTTATAACTTAGGTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATATTTC
* * *
10237836 CGAACATTCCATGCTCAGAAAATACCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
131 CAAACATTCCATGCTCAGAAAATACATTCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGT
* *
10237901 TTTGGCCT-TGAAATTAA-AGAC
196 TTTGGACTGT-AAATTAATA-AA
* * *
10237922 TTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
** *
10237986 CAAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGAAA-ATT
66 CAAGTTCTTTTATAACTTAGG-TCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AGAAATATT
*
10238049 TCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
129 TCCAAACATTCCATGCTCAGA-AAAT-ACATTCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
*
10238112 AAGTTTTGGACTGTTAATTAATAAA
192 AAGTTTTGGACTGTAAATTAATAAA
* * * *
10238137 TTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATGTCAAA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10238196 AACTTATTTA
Statistics
Matches: 236, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
214 2 0.01
215 147 0.62
216 87 0.37
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
CAAGTTCTTTTATAACTTAGGTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATATTTC
CAAACATTCCATGCTCAGAAAATACATTCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGACTGTAAATTAATAAA
Found at i:10238305 original size:122 final size:124
Alignment explanation
Indices: 10238141--10238363 Score: 369
Period size: 122 Copynumber: 1.8 Consensus size: 124
10238131 AATAAATTAG
*
10238141 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATCTCAAAAACTTATTTA
10238206 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10238265 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTCTCAAAGACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATCTCAAAAACTTATTTA
* *
10238328 TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10238364 ACCCGAACTT
Statistics
Matches: 92, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
122 76 0.83
123 2 0.02
124 14 0.15
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (124 bp):
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATCTCAAAAACTTATTTA
CGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10238317 original size:60 final size:62
Alignment explanation
Indices: 10238141--10238363 Score: 369
Period size: 62 Copynumber: 3.6 Consensus size: 62
10238131 AATAAATTAG
* *
10238141 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACATGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10238203 TTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10238265 TTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTCTCAAAGACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10238325 TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10238364 ACCCGAACTT
Statistics
Matches: 150, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
60 54 0.36
61 4 0.03
62 92 0.61
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10238628 original size:62 final size:62
Alignment explanation
Indices: 10238531--10238654 Score: 196
Period size: 62 Copynumber: 2.0 Consensus size: 62
10238521 TCCTTGAATT
* *
10238531 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTAGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10238593 AAAAACTTATTTACGTAAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGT-AGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10238655 CAACTTTTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
62 56 0.98
63 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10238778 original size:278 final size:276
Alignment explanation
Indices: 10238255--10238872 Score: 794
Period size: 278 Copynumber: 2.2 Consensus size: 276
10238245 CAAACTTGTC
* * * *
10238255 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTCTCAAAGA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* *
10238320 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACACCCGAACTTCTAAAACTTTT
66 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACACCCGAACTTCTAAAACTTTT
* * * * *
10238385 ACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGAGCAATTTT
131 AAGATTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTT
* ** ** * *
10238450 TCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTATACAAG
196 TCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
10238515 TTTCAGTCC-TTGAATT
261 TTT-AGGCCTTTAAATT
10238531 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * **
10238595 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCCAACT
63 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACACCCGAACTTCTAAAACT
** * *
10238660 TTTAAGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAA
128 TTTAAGATTTCTTTTATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCATTCCTTCGAGAAA
* * *
10238724 TTTTTCGAACATTCCATGCTCGAAAAATCCCGTCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
192 TTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10238789 CAAGTTTTGGCCTTTAAATT
257 CAAGTTTAGGCCTTTAAATT
** * * * *
10238809 AAAAACTTACATACGTGAGAATTGTATGTC-CCTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-T-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10238873 CTTTCACGAG
Statistics
Matches: 295, Mismatches: 40, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
275 1 0.00
276 21 0.07
277 42 0.14
278 230 0.78
279 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (276 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACACCCGAACTTCTAAAACTTTT
AAGATTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTT
TCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
TTTAGGCCTTTAAATT
Found at i:10239147 original size:61 final size:62
Alignment explanation
Indices: 10239034--10239195 Score: 272
Period size: 61 Copynumber: 2.6 Consensus size: 62
10239024 AATAACTTAG
10239034 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10239096 TTACGTGAGAATTGTTTCTCTCTT-GTTTTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* *
10239157 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC
10239196 AACCGAACTT
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
61 57 0.61
62 37 0.39
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10239464 original size:62 final size:62
Alignment explanation
Indices: 10239367--10239735 Score: 543
Period size: 62 Copynumber: 6.0 Consensus size: 62
10239357 TGAATTAAAA
*
10239367 ACTTATTTACGTG-GAAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAC
1 ACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
10239429 ACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 ACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* *
10239491 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* *
10239553 ACTTATTTACGTGAGAATT-GTT-TCTTTTGGTTCTTAGACGAACTTCCAAACTTGTCAAAC
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* ** * *
10239613 ACTTATTTACATGAGAATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* * * *
10239675 ACTTATTTACGTAAGAATT-GTCTCTATCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAAC
1 ACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
10239736 TTTTATGATT
Statistics
Matches: 281, Mismatches: 22, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
60 53 0.19
61 21 0.07
62 206 0.73
63 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
Found at i:10239628 original size:122 final size:122
Alignment explanation
Indices: 10239367--10239735 Score: 555
Period size: 122 Copynumber: 3.0 Consensus size: 122
10239357 TGAATTAAAA
* * *
10239367 ACTTATTTACGTG-GAAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAACAC
1 ACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10239431 TTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
65 TTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
10239491 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
*
10239556 TATTTACGTGAGAATTGTTTCTTTTGGTTCTTAGACGAACTTCCAAACTTGTCAAAC
66 TATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
* * *
10239613 ACTTATTTACATGAGAATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* * * *
10239678 TATTTACGTAAGAATTGTCTCTATCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAAC
66 TATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
10239736 TTTTATGATT
Statistics
Matches: 228, Mismatches: 13, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
122 118 0.52
123 21 0.09
124 87 0.38
125 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (122 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
Found at i:10239707 original size:184 final size:185
Alignment explanation
Indices: 10239363--10239734 Score: 572
Period size: 184 Copynumber: 2.0 Consensus size: 185
10239353 TCCTTGAATT
* *
10239363 AAAAACTTATTTACGTGGAAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGGAAATTGGTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10239428 CACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACAC
66 CACTTATTTACATGGCAATTAGTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10239493 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
131 TTATTTACGTAAGAATTGTCTCTATCTTGGTTCTTGGACG-ACATCCAAACTTGTC
*
10239549 AAAAACTTATTTACGT-GAGAATT-GTT-TCTTTTGGTTCTTAGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGGA-AATTGGTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAA
*
10239611 ACACTTATTTACATGAG-AATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
65 ACACTTATTTACATG-GCAATTAGTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
*
10239675 ACTTATTTACGTAAGAATTGTCTCTATCTTGGTTCTTGGACGACATCCGAACTTGTC
129 ACTTATTTACGTAAGAATTGTCTCTATCTTGGTTCTTGGACGACATCCAAACTTGTC
10239732 AAA
1 AAA
10239735 CTTTTATGAT
Statistics
Matches: 171, Mismatches: 13, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
183 16 0.09
184 129 0.75
185 6 0.04
186 20 0.12
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (185 bp):
AAAAACTTATTTACGTGGAAATTGGTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
CACTTATTTACATGGCAATTAGTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTCTCTATCTTGGTTCTTGGACGACATCCAAACTTGTC
Found at i:10239927 original size:62 final size:62
Alignment explanation
Indices: 10239849--10240145 Score: 342
Period size: 62 Copynumber: 4.6 Consensus size: 62
10239839 GGTCTAAATA
* * *
10239849 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10239911 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10239976 CGTGAGAATT
53 CGTGAGAATT
* * *
10239986 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10240048 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10240110 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10240146 CTGAATCTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
62 137 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10239999 original size:75 final size:75
Alignment explanation
Indices: 10239871--10240013 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10239861 GTTCTTGGAT
* *
10239871 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10239936 CTTGTTGTAC
66 CTTGTTGTAC
*
10239946 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10240011 CTT
66 CTT
10240014 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10240503 original size:215 final size:217
Alignment explanation
Indices: 10240098--10240584 Score: 601
Period size: 215 Copynumber: 2.2 Consensus size: 217
10240088 AAATCTTATT
* * * * * * *
10240098 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAATCTTTTACTATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * *
10240163 TCTTTTATAACTTCGGTTCCTGAAAATATTCAAGATGATATCCATTCCTTCTAAAAATTTTTCGA
66 TCTTTTATAACTTAGGTTCCTGAAAACATTCAAGACGA-ATCCATTCCTTCTAAAAATTTTCCAA
* * *
10240228 ACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
130 ACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTT
*
10240293 GGCCT-TTAAATTAAAAACTTACA
195 GGACTGTTAAA-TAAAAACTTACA
* * * * *
10240316 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * *
10240380 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACG-ATCCATTCCTT-TGAGCAAA-TTTCCA
66 TCTTTTATAACTTAGGTTCCTGAAAACATTCAAGACGAATCCATTCCTTCT-A-AAAATTTTCCA
*
10240442 AACATTCCATGCTC-GAGAAA-CCACATCATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGT
129 AACATTCCATGCTCGGA-AAATCC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGT
* **
10240505 TTTGGACTGTTAAATAATAACTTAGT
192 TTTGGACTGTTAAATAAAAACTTACA
* *
10240531 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10240585 AACATATTTA
Statistics
Matches: 228, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
214 4 0.02
215 103 0.45
216 37 0.16
217 67 0.29
218 17 0.07
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (217 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCTGAAAACATTCAAGACGAATCCATTCCTTCTAAAAATTTTCCAAA
CATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTG
GACTGTTAAATAAAAACTTACA
Found at i:10240627 original size:62 final size:61
Alignment explanation
Indices: 10240530--10240702 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10240520 AATAACTTAG
10240530 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10240592 TTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10240654 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10240703 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10240966 original size:62 final size:62
Alignment explanation
Indices: 10240861--10241231 Score: 534
Period size: 62 Copynumber: 6.0 Consensus size: 62
10240851 CCTTGAATTG
* * * * *
10240861 AAAACTTATTCACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
1 AAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
10240923 AAGACTTATTTACATGAGTACTGTTTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * *
10240985 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
10241047 AACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
10241109 AAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
10241169 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
10241230 AA
1 AA
10241232 CTTTTATGAT
Statistics
Matches: 278, Mismatches: 28, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
60 58 0.21
61 18 0.06
62 201 0.72
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
Found at i:10240967 original size:340 final size:340
Alignment explanation
Indices: 10240320--10241049 Score: 905
Period size: 340 Copynumber: 2.1 Consensus size: 340
10240310 CTTACATACG
* * * * * **
10240320 TGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTCACGAGTTCTT
* * *
10240384 TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTC
66 TTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATCC
* * *
10240449 CATGCTCGAGAAACCACATCATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGTTTTGGACTG
131 CATGCTCGAGAAACCACATAATTTGGACAAAATAGTTTGCCGTTTTGAAAACAAGTTTTGGACTG
* * * *
10240514 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTT
196 TGAAATAATAACTTAGTTACCTGAGAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAACTT
* * * * *
10240579 GTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAAACTTGTC
261 GTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10240644 AAAAATTTATTTACA
326 AAAAATTTATTTACA
* * *
10240659 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATTTCTT
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTCACGAGTTCTT
* * * * * * *
10240724 TTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTG-GCCAATTTTTCGAACATC
66 TTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGAG-CAAATTTCCAAACATC
* * * * * * * *
10240788 CCATTCTCGAGAAATCGCATAATTTGGACTAAATGGTTTGCCTTTTTGTAAACAAGTTTTGGTCC
130 CCATGCTCGAGAAACCACATAATTTGGACAAAATAGTTTGCCGTTTTGAAAACAAGTTTTGG-AC
* * * *
10240853 T-TGAATTGAA-AACTTA-TTCACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCG
194 TGTGAAAT-AATAACTTAGTT-ACCTGAG-AATTGGTACTCTCTTAGTTCTTGGACGAACTTCCA
* * * * *
10240914 AACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTTTTGGTTCTTGGACGAACTTCCGAAC
256 AACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAAC
*
10240979 TTGTCAAAAATTTATTTACG
321 TTGTCAAAAATTTATTTACA
* *
10240999 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAAC
10241050 ACTTATTTAC
Statistics
Matches: 332, Mismatches: 53, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
339 17 0.05
340 311 0.94
341 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (340 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTCACGAGTTCTT
TTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATCC
CATGCTCGAGAAACCACATAATTTGGACAAAATAGTTTGCCGTTTTGAAAACAAGTTTTGGACTG
TGAAATAATAACTTAGTTACCTGAGAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAACTT
GTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
AAAAATTTATTTACA
Found at i:10241188 original size:184 final size:184
Alignment explanation
Indices: 10240887--10241232 Score: 595
Period size: 184 Copynumber: 1.9 Consensus size: 184
10240877 GCAATTGGTA
* * * *
10240887 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCAC
1 CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTT-AC
* *
10240952 TTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCT
65 TTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
10241017 TGGTTCTTGGACGAACATCCGAACTTGTCAAACACTTATTTACGTGAGAATTGTTT
130 TGGTTCTTGGACG-ACATCCGAACTTGTCAAACACTTATTTACGTGAGAATTGTTT
* *
10241073 CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT-CT
1 CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTTACT
10241137 TTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
66 TTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
10241202 GGTTCTTGGACGACATCCGAACTTGTCAAAC
131 GGTTCTTGGACGACATCCGAACTTGTCAAAC
10241233 TTTTATGATT
Statistics
Matches: 152, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
183 19 0.12
184 77 0.51
186 56 0.37
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (184 bp):
CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAACTGTTTACT
TTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
GGTTCTTGGACGACATCCGAACTTGTCAAACACTTATTTACGTGAGAATTGTTT
Found at i:10241414 original size:62 final size:62
Alignment explanation
Indices: 10241345--10241641 Score: 342
Period size: 62 Copynumber: 4.6 Consensus size: 62
10241335 GGTCTAAATA
* * *
10241345 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10241407 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10241472 CGTGAGAATT
53 CGTGAGAATT
* * *
10241482 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10241544 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10241606 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10241642 CTGAAACTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
62 137 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10241495 original size:75 final size:75
Alignment explanation
Indices: 10241367--10241509 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10241357 GTTCTTGGAT
* *
10241367 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10241432 CTTGTTGTAC
66 CTTGTTGTAC
*
10241442 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10241507 CTT
66 CTT
10241510 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10241894 original size:62 final size:62
Alignment explanation
Indices: 10241828--10241987 Score: 214
Period size: 62 Copynumber: 2.6 Consensus size: 62
10241818 AATTGGTACT
* * * * *
10241828 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGT-TTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-AATGTATTTACATAAGAACTATTTCA
* * * *
10241890 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
*
10241952 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10241988 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 3 0.03
62 84 0.97
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
Found at i:10242094 original size:340 final size:340
Alignment explanation
Indices: 10241459--10242199 Score: 994
Period size: 340 Copynumber: 2.2 Consensus size: 340
10241449 CAAACTTGTC
* * * * *
10241459 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10241524 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * *
10241589 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10241654 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10241719 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10241784 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10241799 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10241863 AGACTGT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
65 ACA-TGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAA
*
10241927 AT-TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
128 ATCTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTT
* *
10241991 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAAT
193 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAAT
* * * *
10242055 TTTTCGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTATA
257 TTTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10242119 CAAGTTTTGGCCTTTAAATT
321 CAAGTTTCGGCCTTTAAATT
*
10242139 AAAAACTTATTTACGTGAGAATT-GTA-TCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTC
10242200 CAACTTTCAC
Statistics
Matches: 350, Mismatches: 43, Indels: 17
0.85 0.10 0.04
Matches are distributed among these distances:
338 3 0.01
339 37 0.11
340 295 0.84
341 15 0.04
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10242325 original size:215 final size:216
Alignment explanation
Indices: 10241923--10242418 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10241913 CGAACTTGTC
* * * *
10241923 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10241988 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* * * * * *
10242053 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10242118 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * *
10242139 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10242203 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
*
10242267 AAATTTCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTG
130 AAATTTCCAAACATTCCATGCTCGGA-AAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10242330 TAAATAGGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * * *
10242354 AATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10242419 AACTTATTTA
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 175 0.74
216 60 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10242455 original size:62 final size:62
Alignment explanation
Indices: 10242357--10242785 Score: 601
Period size: 62 Copynumber: 6.7 Consensus size: 62
10242347 GTTAATTAAT
* * *
10242357 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10242419 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC----T-TCCAAA----C--
10242484 ACTTGTCAAA
55 --TTGTCAAA
*
10242494 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10242556 CACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10242618 AACTTATTTCCGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** * *
10242678 AACTTATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10242740 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10242786 ATCTGAACTT
Statistics
Matches: 330, Mismatches: 22, Indels: 30
0.86 0.06 0.08
Matches are distributed among these distances:
60 58 0.18
61 2 0.01
62 204 0.62
66 2 0.01
67 5 0.02
70 5 0.02
71 2 0.01
75 52 0.16
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10242523 original size:75 final size:75
Alignment explanation
Indices: 10242400--10242541 Score: 266
Period size: 75 Copynumber: 1.9 Consensus size: 75
10242390 TTCTTGGACG
*
10242400 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGCTCTTGGACGAAC
10242465 TTGTTGTACA
66 TTGTTGTACA
*
10242475 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGCTCTTGGACGAAC
10242540 TT
66 TT
10242542 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (75 bp):
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGCTCTTGGACGAAC
TTGTTGTACA
Found at i:10242603 original size:137 final size:137
Alignment explanation
Indices: 10242357--10242603 Score: 440
Period size: 137 Copynumber: 1.8 Consensus size: 137
10242347 GTTAATTAAT
* *
10242357 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
10242422 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAAACT
66 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAAACT
10242487 TGTCAAA
131 TGTCAAA
* * *
10242494 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTCCAAACTTGTCAAACAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10242559 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
66 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
10242604 CCAAACTTGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
137 104 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (137 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAAACT
TGTCAAA
Found at i:10242644 original size:51 final size:53
Alignment explanation
Indices: 10242588--10242700 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 53
10242578 TTCTCTCTTG
10242588 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTCCGTGAGAATTGTTTCTTTT
1 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTCCGTGAGAATTG------TT
*
10242647 GGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTGCGTGAGAATTGTT
1 -GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTCCGTGAGAATTGTT
10242701 TCTCTCTTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
54 2 0.04
60 50 0.96
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (53 bp):
GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTCCGTGAGAATTGTT
Found at i:10242695 original size:122 final size:124
Alignment explanation
Indices: 10242357--10242785 Score: 610
Period size: 122 Copynumber: 3.4 Consensus size: 124
10242347 GTTAATTAAT
* * *
10242357 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10242422 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAAACT
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G--G-AC-----G----AACTTCCAAACT
10242487 TGTCAAA
118 TGTCAAA
* *
10242494 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTCCAAACTTGTCAAACAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
10242559 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10242618 AACTTATTTCCGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* ** * *
10242681 TTATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10242740 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10242786 ATCTGAACTT
Statistics
Matches: 274, Mismatches: 16, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
122 112 0.41
123 2 0.01
124 61 0.22
128 1 0.00
133 2 0.01
134 1 0.00
136 1 0.00
137 94 0.34
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10243048 original size:62 final size:61
Alignment explanation
Indices: 10242982--10243140 Score: 192
Period size: 62 Copynumber: 2.6 Consensus size: 61
10242972 AATTGGTTCT
* * * *
10242982 CTCTTGTTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCA
1 CTCTTGGTTCTTGGAC-AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * * * *
10243044 CTCTTGGTTCTTTGACGAACTTTCGAATTTGTCAAAAACTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGAC-AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * *
10243106 CTCTTGGTTCCTGGACGACATTCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACAACTTTCGAACTTGTCAAA
10243141 CTTTTATGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 16 0.20
62 66 0.80
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10243274 original size:339 final size:338
Alignment explanation
Indices: 10242615--10243694 Score: 1320
Period size: 339 Copynumber: 3.2 Consensus size: 338
10242605 CAAACTTGTC
* * * *
10242615 AAAAACTTATTTCCGTGAGAATTGTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAG
* * * * * * ** * * * *
10242679 ACTTATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAAATCT
66 ACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAACT
* * *
10242744 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCTGAACTTCTGAAACTTTTA
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAAACTTTTA
* * * * * **
10242808 CT-ATTTTTTTTATAACTTCGGTT-C-CTGAAAGTATTCAGGATGATCCATTCTTTC-ACCCAAT
195 -TGATTTCTTTTATAACTTCGGTTCCACTG--AGTATTCAAGTTAATCCATTCCTTCTA-GAAAT
* * *
10242869 TTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTATAAAC
256 TTTTCGAACATCCCATGC-TCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
*
10242934 AAGTTTCGGTCCATGAATT
320 AAGTTTCGGTCCTTGAATT
* * *
10242953 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGTTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
* * * *
10243017 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTTGACGAACTTTCGAATTTGTCAAAAA
64 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
* *
10243082 CTTATTTACGTAAGAATTATTTCTCTCTTGGTTCCTGGACG-ACATTCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTT
* *
10243146 ATGATTTCTTCTATAACTTCGATTCCACTGAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
194 ATGATTTCTTTTATAACTTCGGTTCCACTGAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * * *
10243211 TTGAACATCCCATTCTCGAGAAATCGCATAATTTAGTCTAAATTGTTTGTCTTTTTGTAAACAAG
259 TCGAACATCCCATGCTCG-GAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
10243276 TTTCGGTCCTTGAATT
323 TTTCGGTCCTTGAATT
* * * *
10243292 -GAAACTTATTCACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
*
10243355 AGACTTATTTACATGAGTACTACTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
64 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
* * *
10243420 TTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTT
* * ***
10243485 ACGATTTCTTTTATAACTTCGGCTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
194 ATGATTTCTTTTATAACTTCGGTTCCACTGAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * * * * *
10243550 TCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAG
259 TCGAACATCCCATGCTCGG-AAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
* *
10243615 TTTTGG-CCTTTAAATT
323 TTTCGGTCC-TTGAATT
* * **
10243631 AATAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10243695 CTTTCACGAG
Statistics
Matches: 639, Mismatches: 88, Indels: 29
0.85 0.12 0.04
Matches are distributed among these distances:
337 1 0.00
338 179 0.28
339 314 0.49
340 141 0.22
341 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAG
ACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTTAT
GATTTCTTTTATAACTTCGGTTCCACTGAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTC
GAACATCCCATGCTCGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
CGGTCCTTGAATT
Found at i:10243392 original size:62 final size:62
Alignment explanation
Indices: 10243320--10243479 Score: 212
Period size: 62 Copynumber: 2.6 Consensus size: 62
10243310 AATTGGTACT
* * * * *
10243320 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTACTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
* * * ** *
10243382 CTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
*
10243444 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10243480 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
Found at i:10243818 original size:215 final size:216
Alignment explanation
Indices: 10243421--10243910 Score: 612
Period size: 215 Copynumber: 2.3 Consensus size: 216
10243411 TGTCAAAAAT
* * * *
10243421 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
* * * ** *
10243486 CGATTTCTTTTATAACTTCGGCTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTT
66 CGAGTTCTTTTATAACTTAGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTC
* * * * *
10243551 CGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAGT
131 CAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGAAAACAAGT
* *
10243616 TTTGGCCT-TTAAATTAATAAC
196 TTTGGACTGTTAAA-CAATAAC
* * **
10243637 TTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTTGAACTTGTCAAACTTTCA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
* ** ** *
10243701 CGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCTGGACGATCCATTCCTT-TGAGCAAA-TT
66 CGAGTTCTTTTATAACTTAGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTT
*
10243764 TCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACA
129 TCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGAAAACA
*
10243828 AGTTTTGGATTGTTAAACAATAAC
193 AGTTTTGGACTGTTAAACAATAAC
* * * *
10243852 TTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTGGTCAAA
1 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10243911 AACATATTTA
Statistics
Matches: 232, Mismatches: 37, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
214 3 0.01
215 172 0.74
216 57 0.25
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCA
CGAGTTCTTTTATAACTTAGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTC
CAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGAAAACAAGT
TTTGGACTGTTAAACAATAAC
Found at i:10244028 original size:62 final size:62
Alignment explanation
Indices: 10243849--10244028 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10243839 GTTAAACAAT
* * *
10243849 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTGGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10243911 AACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10243973 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10244029 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10244283 original size:340 final size:338
Alignment explanation
Indices: 10243634--10244730 Score: 1148
Period size: 340 Copynumber: 3.2 Consensus size: 338
10243624 TTAAATTAAT
* * * **
10243634 AACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTTGAACTTGTCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * * * * *
10243698 TCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCTGGACGATCCATTCCTTT-GAGCAAA
66 TTACTATTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAGGATGATCCATT-CTTTCGAGCAAT
* * * * * * *
10243762 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAAC
130 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAAG
* ** * * * *
10243827 AAGTTTTGGATTGTT-AAACAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
195 AAG-TTTCGATACTTGAATCAAAAACTTATTTACGTG-GAATTGTTTCTCTCTTGGTTCTTGGAC
* * *
10243891 GAACTTCCAAACTGGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
258 GAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10243956 CTTCTAAACTTGTCAA
323 CTTCCAAACTTGTCAA
* *
10243972 AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* * *
10244037 TTTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAGGATGATCCATTCTTTCGACCAAT
65 TTTACTATTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAGGATGATCCATTCTTTCGAGCAAT
* * * *
10244102 TTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAG
130 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAAG
* * * *
10244167 AAGTTTCGATCCTTGAATTAAAAACTAATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACG
195 AAGTTTCGATACTTGAATCAAAAACTTATTTACGTGG-AATTGTTTCTCTCTTGGTTCTTGGACG
* * * * ** * * * *
10244232 AACTTTCGAACTTGTTAAAGATTTATTTACACGAGTACTGTTTCACTCTTGGTTCTTTGACGAAC
259 AACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
10244297 TTCCGAACTTGTCAAA
324 TTCCAAACTTGTC-AA
* * * *
10244313 AACTTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGATGAACATCTGAACTTGTCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * * * * *
10244378 TTA-TGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTACT-ATTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAGGATGATCCATTCTTTCGAGCAAT
* * * * *
10244442 TTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAATTTCACTCTTAGTTCT-
130 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTT--GTCTT--TT-TG
* * * * * * *
10244506 TGGACGAA-CTTCCAAACTTG--TCAAAAACTTATTTACGTGAACATTGTTTCTCTGTTGGTTCT
190 T-AAAGAAGTTTCGATACTTGAATCAAAAACTTATTTACGTGGA-ATTGTTTCTCTCTTGGTTCT
10244568 TGGACGAACTTGTTGTACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTC
253 TGGACGAAC------T------TT-CAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTC
*
10244633 TCTTCGTTCTTGGACGAACTTCCAAACTTGTCAA
305 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* *
10244667 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
10244731 ACTTATTTAC
Statistics
Matches: 625, Mismatches: 106, Indels: 39
0.81 0.14 0.05
Matches are distributed among these distances:
338 2 0.00
339 38 0.06
340 394 0.63
341 5 0.01
342 48 0.08
344 11 0.02
345 5 0.01
348 1 0.00
354 5 0.01
355 116 0.19
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACTATTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAGGATGATCCATTCTTTCGAGCAATT
TTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCTTTTTGTAAAGA
AGTTTCGATACTTGAATCAAAAACTTATTTACGTGGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CCAAACTTGTCAA
Found at i:10244336 original size:62 final size:61
Alignment explanation
Indices: 10244186--10244374 Score: 200
Period size: 62 Copynumber: 3.0 Consensus size: 61
10244176 TCCTTGAATT
* * * * *
10244186 AAAAACTAATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTT
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
10244248 AAAGATTTATTTACACG-AGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTC
1 AAAAACTTATTT--ACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
10244310 AAAAACTTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGATGAACATCTGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10244372 AAA
1 AAA
10244375 CTTTTATGAT
Statistics
Matches: 102, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
60 3 0.03
62 95 0.93
63 1 0.01
64 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10244572 original size:62 final size:62
Alignment explanation
Indices: 10244490--10244969 Score: 687
Period size: 62 Copynumber: 7.6 Consensus size: 62
10244480 GTCTAAATAA
* *
10244490 TTTCACTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA-ACATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGA-ATTG
* *
10244552 TTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACAAACTTCCAAACTTGTCAAAAACTTATTTAC
1 TTTCTCTCTTGGTTCTTGGACGAAC----T-TCCAAA----C----TTGTCAAAAACTTATTTAC
10244617 GTGAGAATTG
53 GTGAGAATTG
* *
10244627 TTTCTCTCTTCGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
*
10244689 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
10244751 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
10244813 TTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
** * * *
10244873 TTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
* *
10244935 TTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10244970 CTAAAACTTT
Statistics
Matches: 383, Mismatches: 19, Indels: 32
0.88 0.04 0.07
Matches are distributed among these distances:
60 59 0.15
61 2 0.01
62 257 0.67
66 2 0.01
67 5 0.01
70 5 0.01
71 2 0.01
75 50 0.13
76 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
Found at i:10244642 original size:75 final size:75
Alignment explanation
Indices: 10244512--10244653 Score: 250
Period size: 75 Copynumber: 1.9 Consensus size: 75
10244502 TTCTTGGACG
* *
10244512 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAACATTGTTTCTCTGTTGGTTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAACATTGTTTCTCTCTTCGTTCTTGGACGAAC
10244577 TTGTTGTACA
66 TTGTTGTACA
10244587 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTCGTTCTTGGACGAA
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGA-ACATTGTTTCTCTCTTCGTTCTTGGACGAA
10244651 CTT
65 CTT
10244654 CCAAACTTGT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
75 63 0.98
76 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (75 bp):
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAACATTGTTTCTCTCTTCGTTCTTGGACGAAC
TTGTTGTACA
Found at i:10244905 original size:184 final size:186
Alignment explanation
Indices: 10244587--10244969 Score: 664
Period size: 184 Copynumber: 2.1 Consensus size: 186
10244577 TTGTTGTACA
10244587 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACGAAC
* ** *
10244652 TTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
66 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATC
10244717 CAAACTTGTCAAACA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
131 CAAACTTGTCAAA-ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10244773 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACGAAC
*
10244836 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATC
66 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATC
10244901 CAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
131 CAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10244957 AACATCCGAACTT
1 AACTTCCAAACTT
10244970 CTAAAACTTT
Statistics
Matches: 188, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
183 1 0.01
184 141 0.75
185 1 0.01
186 45 0.24
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (186 bp):
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATC
CAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
Found at i:10245223 original size:62 final size:62
Alignment explanation
Indices: 10245156--10245315 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 62
10245146 AATTGGTTCT
* * * * * *
10245156 CTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAGATTTATTTACACGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
* * ** * *
10245218 CTCTTGGTTCTTTGACGAACTTCCGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
*
10245280 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10245316 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTGTTTCA
Found at i:10245439 original size:340 final size:338
Alignment explanation
Indices: 10244789--10245870 Score: 1537
Period size: 340 Copynumber: 3.2 Consensus size: 338
10244779 CAAACTTGTC
* * * *
10244789 AAAAACTTATTTACGTGAGAATTGTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAG
* * * * ** * * * *
10244853 ACTTATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAAATCT
66 ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* * *
10244918 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTAAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* *
10244983 GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTC-AGAATGATCCATTCTTTCGACCAATTTTT
196 GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAG-ATGATCCATTCTTTTGGCCAATTTTT
* * *
10245047 TGAACATCCCATGCTCGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
260 CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
10245112 TTCGATCCTTGAATT
325 TTCG-TCCTTGAATT
*
10245127 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10245191 AGATTTATTTACACGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTTAAAAA
64 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
10245256 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
*
10245321 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGGCCAATTTT
* *
10245386 TCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAG
259 TCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
10245451 TTTCGGTCCTTGAATT
324 TTTC-GTCCTTGAATT
* * * *
10245467 GAAAACTTATTCACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10245531 AGACTTATTTACATGAGTACTGTTTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
64 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* *
10245596 TTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTCT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* ** * * * * *
10245661 ACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAG-AAATTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTTGGCCAATTT
* * * * * *
10245725 TTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
258 TTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
* * *
10245790 GTTTTGGCCTTTAAATT
323 GTTTCGTCC-TTGAATT
*
10245807 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10245871 CTTTCACGAG
Statistics
Matches: 668, Mismatches: 67, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
337 1 0.00
338 21 0.03
339 41 0.06
340 596 0.89
341 9 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAG
ACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGGCCAATTTTTC
GAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
TCGTCCTTGAATT
Found at i:10245568 original size:62 final size:62
Alignment explanation
Indices: 10245496--10245655 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10245486 AATTGGTACT
* * * *
10245496 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * * *
10245558 CTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10245620 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10245656 CTTCTACGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10245993 original size:215 final size:216
Alignment explanation
Indices: 10245591--10246086 Score: 653
Period size: 215 Copynumber: 2.3 Consensus size: 216
10245581 CGAACTTGTC
* * *
10245591 AAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10245656 CTTCTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTCTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * *
10245721 ATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGAAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10245786 ACAAGTTTTGGCCTT-TAAATT
196 ACAAGTTTTGG-ATTGTAAATT
* * *
10245807 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** *
10245871 CTT-TCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAG
66 CTTCT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG
* * *
10245934 CAAA-TTTCCAAACATTCCATGCTCGAGACAT-CATATTATTTGGTCAAAATAGTTTGTCATTTT
129 -AAATTTTCCAAACATTCCATGCTCGAAAAATCCAT-TCATTTGGTCAAAATAGTTTGTCATTTT
*
10245997 GTAAACAAGTTTTGGATTGTTAATT
192 GTAAACAAGTTTTGGATTGTAAATT
* * * *
10246022 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10246087 AACTTATTTA
Statistics
Matches: 243, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
214 6 0.02
215 177 0.73
216 60 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTCTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGATTGTAAATT
Found at i:10246249 original size:122 final size:124
Alignment explanation
Indices: 10246025--10246264 Score: 378
Period size: 122 Copynumber: 2.0 Consensus size: 124
10246015 GTTAATTAAT
10246025 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10246090 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTACGTGAAAAATGTTTCTCTATTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10246149 AACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTTAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10246212 TTATTTACGTGAGAATTGTTTCTCTATTGGATT-TTGGACGAACATCCGAACTT
66 TTATTTACGTGAAAAATGTTTCTCTATTGG-TTCTTGGACGAACATCCAAACTT
10246265 CTGAAACTTT
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
122 79 0.74
123 3 0.03
124 25 0.23
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAAAAATGTTTCTCTATTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10246273 original size:60 final size:62
Alignment explanation
Indices: 10246025--10246264 Score: 378
Period size: 62 Copynumber: 3.9 Consensus size: 62
10246015 GTTAATTAAT
* *
10246025 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10246087 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10246149 AACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10246209 AACTTATTTACGTGAGAATTGTTTCTCTATTGGATT-TTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACTTCCAAACTT
10246265 CTGAAACTTT
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
60 58 0.35
61 2 0.01
62 104 0.63
63 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10246483 original size:338 final size:336
Alignment explanation
Indices: 10246084--10246824 Score: 861
Period size: 340 Copynumber: 2.2 Consensus size: 336
10246074 CAAACTTGTC
* * * *
10246084 AAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAA
* * * * *
10246149 AACTTATTTACGTGAGAATTGTTT-CTTTTGGTTCTTGGACGAACTTCCAAACTTGTTAAAAACT
64 AACTTATTTACATGAGAACTATTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* *
10246213 TATTTACGTGAGAAT-TGTTTCTCTATTGGATT-TTGGACGAACATCCGAACTTCTGAAACTTTT
129 TATTTACGTAAGAATCT-TTTCTCTATTGG-TTCTTGGACGAACATCCGAACTTCTCAAACTTTT
* * ** * * * * *
10246276 ACGATTTCTTTTATAACTCCGGTTCCTGAAAGTATCC-ATGATGATCCATTCTTTCGACCAGTTT
192 AAGATTTCTTTTATAACTCCGGTTACAAAAAGAATCCTA-GATAATCCATTCCTTCGACAAATTT
* * ** *
10246340 TTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGAT-TGTCTTTTTCTAAA-A
256 TTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAG-TGTGTCATTTTCTAAACA
*
10246403 TAGTTTTGGTCC-TTGAATT
320 -AG-TTTGG-CCTTTAAATT
*
10246422 AAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTATCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGACGAACT-TCGAACTTGTCAAA
* * ** *
10246487 GACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATTAACTTCCGAACTTGTCAAAAAC
64 AACTTATTTACATGAGAACTATTT-ACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10246552 TTATTTACGTAAGAATCTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 TTATTTACGTAAGAATCTTTTCTCTATTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* * * * *
10246617 AGATTTCTTTTATAACTTCGGTTACAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAAATTTTT
193 AGATTTCTTTTATAACTCCGGTTACAAAAAGAATCCTAGATAATCCATTCCTTCGACAAATTTTT
* * * *
10246682 CGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAGT
258 CGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTCTAAACAAGT
10246747 TTGGCCTTTAAATT
323 TTGGCCTTTAAATT
* * * *
10246761 AAAAACTTATTTACGT-GAGATTTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGGA-ATTGGT-TCTCTCTTGGTTCTTGGACGAA-CTTCGAACTTGTCAA
10246824 A
63 A
10246825 CTTTGACGAG
Statistics
Matches: 342, Mismatches: 48, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
337 1 0.00
338 113 0.33
339 35 0.10
340 190 0.56
341 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (336 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAA
CTTATTTACATGAGAACTATTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTAAGAATCTTTTCTCTATTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTAAGA
TTTCTTTTATAACTCCGGTTACAAAAAGAATCCTAGATAATCCATTCCTTCGACAAATTTTTCGA
ACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTCTAAACAAGTTTG
GCCTTTAAATT
Found at i:10246524 original size:62 final size:63
Alignment explanation
Indices: 10246451--10246610 Score: 220
Period size: 62 Copynumber: 2.6 Consensus size: 63
10246441 AATTGGTTCT
* * *
10246451 CTCTTGGTTCTTGGACGAACTAT-CGAACTTGTCAAAGACTTATTTACATGAGTA-CTATTTCA
1 CTCTTGGTTCTTGGACGAACTATCCGAACTTGTCAAAAACTTATTTACATAAGAATCT-TTTCA
** * *
10246513 CTCTTGGTTCTTGGATTAACT-TCCGAACTTGTCAAAAACTTATTTACGTAAGAATCTTTTCT
1 CTCTTGGTTCTTGGACGAACTATCCGAACTTGTCAAAAACTTATTTACATAAGAATCTTTTCA
10246575 CTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTATCCGAACTTGTCAAA
10246611 CTTTTAAGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
61 1 0.01
62 83 0.97
63 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (63 bp):
CTCTTGGTTCTTGGACGAACTATCCGAACTTGTCAAAAACTTATTTACATAAGAATCTTTTCA
Found at i:10246948 original size:214 final size:215
Alignment explanation
Indices: 10246546--10247040 Score: 599
Period size: 214 Copynumber: 2.3 Consensus size: 215
10246536 CGAACTTGTC
* *
10246546 AAAAACTTATTTACGTAAGAATCTT-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AT-TTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * **
10246610 ACTTTTAAGATTTCTTTTATAACTTCGGTTACAAAAAGAATTCTAGTTAATCCATTCCTTCTAGA
64 ACTTTGAAGAGTTCTTTTATAACTTCGGTTACAAAAAGAATTCAAGACAATCCATTCCTTCTAGA
* * * * *
10246675 AATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTA
129 AATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTA
**
10246740 AACAAG-TTTGG-CCTTTAAATT
194 AACAAGTTTTGGACAGTT-AATT
* * * *
10246761 AAAAACTTATTTACGTGAGATTTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGATTTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * ** *
10246825 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACAATCCATTCCTT-TGAGC
65 CTTTGAAGAGTTCTTTTATAACTTCGGTTACAAAAAGAATTCAAGACAATCCATTCCTTCT-AG-
*
10246889 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTGTGTCATTTTG
10246952 TAAACAAGTTTTGGACAGTTAATT
192 TAAACAAGTTTTGGACAGTTAATT
* * * * *
10246976 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGATTTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10247041 AACTTATTTA
Statistics
Matches: 237, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
213 5 0.02
214 141 0.59
215 59 0.25
216 32 0.14
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGATTTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTGAAGAGTTCTTTTATAACTTCGGTTACAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTAAA
CAAGTTTTGGACAGTTAATT
Found at i:10247077 original size:62 final size:62
Alignment explanation
Indices: 10246979--10247158 Score: 297
Period size: 62 Copynumber: 2.9 Consensus size: 62
10246969 GTTAATTAAT
* *
10246979 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10247041 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10247103 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10247159 CTTAAACTTT
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10247417 original size:62 final size:62
Alignment explanation
Indices: 10247345--10247504 Score: 214
Period size: 62 Copynumber: 2.6 Consensus size: 62
10247335 AATTGGTTCT
* * * *
10247345 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
** * * *
10247407 CTCTTGGTTCTTGGATTAAC-TTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACATT-CGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
*
10247469 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10247505 CTTTTACGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
61 2 0.02
62 81 0.96
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10247442 original size:340 final size:336
Alignment explanation
Indices: 10246761--10247719 Score: 1111
Period size: 340 Copynumber: 2.8 Consensus size: 336
10246751 CCTTTAAATT
* * * * ** *
10246761 AAAAACTTATTTACGTGAGATTTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10246825 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTT-GAGC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATT-CTTTCGAGC
* * *
10246889 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTT-TCATTTTGTA
* * * * *
10246954 AACAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
194 AACAAGTTTTGG-C-CTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGG
* * *
10247019 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACG
257 ACGAACTT-CGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACG
10247084 AACTTCCAAACTTGTC
321 AACTTCCAAACTTGTC
* * * * *
10247100 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCAAACTTCTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10247165 CTTTTACGATTTCTTTTA-ATACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACC
66 CTTTTACGATTTCTTTTATA-ACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTTCGAGC
* * * ** * * * *
10247229 AGTTTTTCGAACATCCCATGCTCGGGAAATTGCATAATTTGGTCCAAATAGATTTTCTTTTTCTA
130 AATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAG-TTTTCATTTTGTA
* *
10247294 AAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTG
194 AACAAGTTTTGG-CCTT-AATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTG
* ** * *
10247358 GACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAT
256 GACGAAC-TTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGAC
* *
10247423 TAACTTCCGAACTTGTC
320 GAACTTCCAAACTTGTC
* *
10247440 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10247505 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTTCGAGCA
* * * * *
10247570 ATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGT-TTTCATTTTGTAA
*
10247635 ACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTGG
195 ACAAGTTTTGGCC-TT-AATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGG
* *
10247698 ATGAATTTTCGAACTTGTCAAA
257 ACGAA-CTTCGAACTTGTCAAA
10247720 CTTTGACGAG
Statistics
Matches: 518, Mismatches: 89, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
339 70 0.14
340 441 0.85
341 7 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (336 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTTCGAGCA
ATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCATTTTGTAAA
CAAGTTTTGGCCTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
ACTTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGAACTT
CCAAACTTGTC
Found at i:10247736 original size:215 final size:216
Alignment explanation
Indices: 10247440--10247935 Score: 667
Period size: 215 Copynumber: 2.3 Consensus size: 216
10247430 CGAACTTGTC
* * *
10247440 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * **
10247505 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTCT-AG-
66 CTTTGACGAGTTCTTTTATAACTTCGGTTCCAAAAAGAATTCAAGACAATCCATTCCTT-TGAGC
* * * * *
10247568 AAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGT
130 AAA-TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGT
**
10247633 AAACAAGTTTTGG-CCTTTAAATT
194 AAACAAGTTTTGGACAGTT-AATT
* * * * *
10247656 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** *
10247720 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTTGAGCA
66 CTTTGACGAGTTCTTTTATAACTTCGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTTGAGCA
* *
10247785 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTAA
10247850 ACAAGTTTTGGACAGTTAATT
196 ACAAGTTTTGGACAGTTAATT
* * * *
10247871 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10247936 AACTTATTTA
Statistics
Matches: 241, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
214 1 0.00
215 179 0.74
216 61 0.25
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTGACGAGTTCTTTTATAACTTCGGTTCCAAAAAGAATTCAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTAA
ACAAGTTTTGGACAGTTAATT
Found at i:10247972 original size:62 final size:62
Alignment explanation
Indices: 10247874--10248053 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10247864 GTTAATTAAT
* *
10247874 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10247936 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10247998 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10248054 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10248081 original size:895 final size:894
Alignment explanation
Indices: 10246087--10249164 Score: 4797
Period size: 895 Copynumber: 3.5 Consensus size: 894
10246077 ACTTGTCAAA
* * * *
10246087 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10246152 TTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTTAAAAACTTA
66 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10246215 TTTACGTGAGAATTGTTTCTCTATTGGATTTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
*
10246280 TTTCTTTTATAACTCCGGTTCCTGAAAGTATCCATGATGATCCATTCTTTCGACCAGTTTTTCGA
196 TTTCTTTTATAACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCGA
* * * * * *
10246345 ACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGATTGTCTTTTTCTAAAATAGTTTT
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTTC
*
10246410 GGTCCTTGAATTAAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAAC-TAT
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACAT-T
*
10246474 CGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGATTAACTTCCGA
390 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGA
10246539 ACTTGTCAAAAACTTATTTACGTAAGAATCTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
455 ACTTGTCAAAAACTTATTTACGTAAGAAT-TTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* *
10246604 TGTCAAACTTTTAAGATTTCTTTTATAACTTCGGTTACAAAAAGAATTCTAGTTAATCCATTCCT
519 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCT
*
10246669 TCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
584 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
*
10246734 TTTGTAAACAAG-TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGATTTGTATCTCCTTGGTT
649 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
10246798 GTTGGATGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGC
714 GTTGGATGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGC
10246863 ATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
779 ATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
10246928 TGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTTAATTAAT
844 TGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTTAATTAAT
10246979 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10247044 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATCTTA
66 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
10247109 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCAAACTTCTTAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
10247174 TTTCTTTTA-ATACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCG
196 TTTCTTTTATA-ACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCG
*
10247238 AACATCCCATGCTCGGGAAATTGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTT
260 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTT
10247303 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATT
10247368 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGA
390 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGA
10247433 ACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
455 ACTTGTCAAAAACTTATTTACGTAAGAATT-TTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
10247498 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCT
519 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCT
10247563 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
584 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
10247628 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
649 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
10247693 GTTGGATGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGC
714 GTTGGATGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGC
10247758 ATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
779 ATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
10247823 TGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTTAATTAAT
844 TGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTTAATTAAT
10247874 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10247939 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATCTTA
66 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
10248004 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
*
10248069 TTTCTTTTA-ATACTCCAGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCG
196 TTTCTTTTATA-ACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCG
10248133 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTT
260 AACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTT
10248198 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATT
325 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATT
10248263 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGA
390 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGA
* * *
10248328 ACTTGTCCAAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCCGAACT
455 ACTTGTCAAAAACTTATTTACGTAAGAATT-TTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
10248393 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTT-A---A-TCCT
519 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCT
10248453 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
584 TCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCAT
* *
10248518 TTTGTAAACAAGTTTTGGCCTTTAAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
649 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGT
* ** * * * * * * * *
10248583 TCTTGGACT-AACATCCGAACTTCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAA
713 TGTTGGA-TGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAA
* ** * *** * * *
10248647 --ATTTCCAGGATGATCCATT-CTTTCTA-CAAATTTTTTGAACATCCCATGCTCGGGAAATCGC
777 GCA-TT-CAAGACAATCCATTCCTTT-GAGCAAA-TTTCCAAACATTCCATGCTCGAGAAATCAC
* * * * * * *
10248708 ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTC-TTTGAATTAAA
838 ATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTT-AATTAAT
* * * * * * * * *
10248765 AACTTATTTACG-GGGCAGTTGGTTCTCTCTTGGTTCTTGAACGAACTTTCGAACTTGTCAAAGA
1 AACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* ** ** * * * * * *
10248829 TTTATTTACACGAGTACTATTTCACTCTTGGTTCTTTGTCGAACTTCCGAACTTGTCAAAAACTT
65 CTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
* * * ** *
10248894 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCGAACTAGTCAAACTTTTACG
130 ATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
* * ** * * * * *
10248958 ATTTC-TTTATAACTTCGATTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTGA--AATTTTTC
195 ATTTCTTTTATAACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTC-GACCAGTTTTTC
* * * * * * * *
10249020 GAACATGCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAG-TTTGTCATTTTGTAAACAAGT
259 GAACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTT-TCTTTTTCTAAAAAAGT
* * * *
10249084 TTTGG-CATTTAAATTAAAAACTTATTTACGTGAG-AATT-GTATCTC-CTTGGTTGTTGGACGA
323 TTCGGTC-CTTGAATTAAAAACTTATTTACGTG-GCAATTGGT-TCTCTCTTGGTTCTTGGACGA
* *
10249145 ACTTTCAAAACTTGTCAAAG
385 ACATTC-GAACTTGTCAAAG
10249165 GACGAACATC
Statistics
Matches: 2052, Mismatches: 113, Indels: 46
0.93 0.05 0.02
Matches are distributed among these distances:
887 26 0.01
888 106 0.05
889 37 0.02
890 170 0.08
891 281 0.14
892 83 0.04
893 3 0.00
894 548 0.27
895 798 0.39
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (894 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
TTTCTTTTATAACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTCGA
ACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAAAAAAGTTTC
GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTC
GAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACTTCCGAA
CTTGTCAAAAACTTATTTACGTAAGAATTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCCATTCCTTC
TAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTT
TGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
TGGATGAATTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCAT
TCAAGACAATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTG
GTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACAGTTAATTAAT
Found at i:10248213 original size:555 final size:555
Alignment explanation
Indices: 10247100--10248275 Score: 1411
Period size: 555 Copynumber: 2.1 Consensus size: 555
10247090 CAAACTTGTC
* * * * * *
10247100 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCAAACTTCTTAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
* * * **
10247165 CTTTTACGATTTCTTTTAATACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCA
65 CTTTGACGAGTTCTTTTAATACTCCGGTTCCTGAAAGCATCCAAGACAATCCATTCTTTCGACCA
** * * * ** * *
10247230 GTTTTTCGAACATCCCATGCTCGGGAAATTGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAA
130 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTTTCATTTTCTAA
* * *
10247295 AAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGA
195 AAAAGTTTCGGACCTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCTCTTAGTTCTTGGA
* * ** * **
10247360 CGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTA
260 CGAACATTCAAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGA
* *
10247425 ACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACA
325 ACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGATCTTGGACGAACA
* * * * * *
10247490 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAAT
390 TCCGAACTTCTCAAACTTTTACGATTTCTTTTATAACTCCAGTTCCAAAAAGAATCCAAGATAAT
* * * * * *
10247555 CCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAG
455 CCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCCAAATAG
* * *
10247620 TGTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
520 TGTGTCATTTTCTAAAAAAGTTTCGGCCTTTAAATT
* * **
10247656 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
** * * *
10247720 CTTTGACGAGTTCTTTT-ATAACTTGGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTT-GAG
65 CTTTGACGAGTTCTTTTAAT-ACTCCGGTTCCTGAAAGCATCCAAGACAATCCATT-CTTTCGAC
* * *
10247783 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAG-TTTGTCATTTTG
128 CAAATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTT-TCATTTTC
* * * * *
10247847 TAAACAAGTTTTGGACAGTT-AATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTC
192 TAAAAAAGTTTCGGAC-CTTGAATTAAAAACTTAGTTACGTG-GCAATTGGTTCTCTCTTAGTTC
* *
10247910 TTGGACGAAC-TTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTT
255 TTGGACGAACATT-CAAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTT
* * *
10247974 GGACGAACTTCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGA
319 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGATCTTGGA
* ** *
10248039 CGAACATCCGAACTTCTGAAACTTTTACGATTTCTTTTA-ATACTCCAGTTCCTGAAAGTATCCA
384 CGAACATCCGAACTTCTCAAACTTTTACGATTTCTTTTATA-ACTCCAGTTCCAAAAAGAATCCA
* * * * ** *
10248103 AGATGATCCATTCTTTCGACCAGTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTC
448 AGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTC
* * *
10248168 CAAATAGAT-TTTCTTTTTCTAAAAAAGTTTCGGTCC-TTGAATT
513 CAAATAG-TGTGTCATTTTCTAAAAAAGTTTCGG-CCTTTAAATT
10248211 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAA
10248275 A
64 A
10248276 GACTTATTTA
Statistics
Matches: 520, Mismatches: 87, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
554 9 0.02
555 442 0.85
556 69 0.13
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
TTTGACGAGTTCTTTTAATACTCCGGTTCCTGAAAGCATCCAAGACAATCCATTCTTTCGACCAA
ATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTTTCATTTTCTAAA
AAAGTTTCGGACCTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCTCTTAGTTCTTGGAC
GAACATTCAAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGATCTTGGACGAACAT
CCGAACTTCTCAAACTTTTACGATTTCTTTTATAACTCCAGTTCCAAAAAGAATCCAAGATAATC
CATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCCAAATAGT
GTGTCATTTTCTAAAAAAGTTTCGGCCTTTAAATT
Found at i:10248312 original size:62 final size:61
Alignment explanation
Indices: 10248240--10248399 Score: 196
Period size: 62 Copynumber: 2.6 Consensus size: 61
10248230 AATTGGTTCT
* * * *
10248240 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA-ACTTAGTTACATAAGAACTGTTACA
** * * *
10248302 CTCTTGGTTCTTGGATTAAC-TTCCGAACTTGTCCAAAACTTAGTTACGTAAGAATTGTTACT
1 CTCTTGGTTCTTGGACGAACATT-CGAACTTGT-CAAAACTTAGTTACATAAGAACTGTTACA
*
10248364 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10248400 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
61 6 0.07
62 72 0.87
63 5 0.06
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAACTTAGTTACATAAGAACTGTTACA
Found at i:10248333 original size:340 final size:335
Alignment explanation
Indices: 10247657--10248604 Score: 1111
Period size: 340 Copynumber: 2.8 Consensus size: 335
10247647 CTTTAAATTA
* * * ** *
10247657 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAATTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * * * *
10247721 TTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACAATCCATTCCTTTGAGCAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATT-CTTTGA-CAA
* * *
10247786 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
129 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTT-TCATTTTGTAAA
* * * *
10247851 CAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
193 CAAGTTTTGG-C-CTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * *
10247916 GAAC-TTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGA
256 GAACATT-CGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGA
10247980 ACTTCCAAACTTGT-C
320 ACTTCCAAACTTGTCC
* * *
10247995 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAA
1 AAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10248060 CTTTTACGATTTCTTTTA-ATACTCCAGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACC
65 CTTTTACGATTTCTTTTATA-ACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTT-GA-C
* * * * * * * *
10248124 AGTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTA
127 AATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAG-TTTTCATTTTGTA
* * *
10248189 AAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTG
191 AACAAGTTTTGG-CCTT-AATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTG
* ** * *
10248253 GACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAT
253 GACGAACATTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGAC
* *
10248318 TAACTTCCGAACTTGTCC
318 GAACTTCCAAACTTGTCC
* * *
10248336 AAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * *
10248401 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCC-TTC-TAGA-AATT
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTTGACAATT
* * * * *
10248463 TTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAACA
131 TTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGT-TTTCATTTTGTAAACA
* *
10248528 AGTTTTGGCCTTTAAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTA
195 AGTTTTGGCC-TT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10248593 ACATCCGAACTT
258 ACATTCGAACTT
10248605 CTGAAACTTT
Statistics
Matches: 514, Mismatches: 83, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
334 3 0.01
335 121 0.24
336 1 0.00
337 2 0.00
338 5 0.01
339 35 0.07
340 336 0.65
341 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (335 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATAATCCATTCTTTGACAATT
TTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCATTTTGTAAACAA
GTTTTGGCCTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
TTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGAACTTCC
AAACTTGTCC
Found at i:10248625 original size:211 final size:214
Alignment explanation
Indices: 10248336--10248826 Score: 605
Period size: 216 Copynumber: 2.3 Consensus size: 214
10248326 GAACTTGTCC
* * * *
10248336 AAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAAC
* *
10248401 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTA-G-T-T-AATCCTTCTAGAAAT
66 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA-AATTCCAGGATATCAATCCTTCTACAAAT
* * *
10248462 TTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAAC
130 TTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTAAAC
*
10248527 AAGTTTTGGCCTTTAAATCA
195 AAGTTTCGGCCTTTAAATCA
* *
10248547 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTGAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAAC
* ** * * *
10248612 TTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATTTCCAGGATGATCCATTCTTTCTACAAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAAATTCCAGGAT-AT-CAATCCTTCTACAAA
* ** * * *
10248677 TTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
129 TTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTAAA
* * *
10248742 CAAGTTTCGGTCTTTGAATTA
194 CAAGTTTCGGCCTTTAAATCA
* * * * * * *
10248763 AAAACTTATTTACG-GGGCAGTTGGTTCTCTCTTGGTTCTTGAACGAACTTTCGAACTTGTCAAA
1 AAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAA
10248827 GATTTATTTA
Statistics
Matches: 237, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
210 5 0.02
211 92 0.39
212 1 0.00
214 1 0.00
215 2 0.01
216 136 0.57
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (214 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAAATTCCAGGATATCAATCCTTCTACAAATT
TTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTAAACA
AGTTTCGGCCTTTAAATCA
Found at i:10248919 original size:62 final size:63
Alignment explanation
Indices: 10248787--10248926 Score: 167
Period size: 62 Copynumber: 2.3 Consensus size: 63
10248777 GGGCAGTTGG
* * * * *
10248787 TTCTCTCTTGGTTC-TTGAACGAACTTTCGAACTTGTCAAAGATTTATTTACACGAGTACTAT
1 TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTAT
* * ** * *
10248849 TTCACTCTTGGTTCTTTG-TCGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
1 TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTAT
10248911 TTCTCTCTTGGTTCTT
1 TTCTCTCTTGGTTCTT
10248927 GGATGACATC
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 62 0.95
63 3 0.05
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (63 bp):
TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTAT
Found at i:10249353 original size:240 final size:238
Alignment explanation
Indices: 10248932--10249403 Score: 605
Period size: 240 Copynumber: 2.0 Consensus size: 238
10248922 TTCTTGGATG
* *
10248932 ACATCCGAACTAGTCAAACTTTTACGATTTCTTTATAACTTCGATTCCAAAAAGTATTCAAGTTA
1 ACATCCGAACTAGTCAAACTTTTACGATTTCTTTATAACTTCGATTCCAAAAAGCATTCAAGATA
* * *
10248997 ATCCATTCCTTCTGAAATTTTTCGAACATGCCATGCTCGGAAAATCCCATCATTTGGTCTAAATA
66 ATCCACTCCTTCTGAAATTTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAACA
* *
10249062 GTTTGTCATTTTGTAAACAAGTTTTGGCATTTAAATTAAAAACTTATTTACGTGAGAATT-GTAT
131 GTTTGTCATTTTGTAAACAAGTTTCGGCACTTAAATTAAAAACTTATTTACGTGAGAATTGGT-T
* *
10249126 CTC-CTTGGTTGTTGGACGAACTTTCAAAACTTGTCAAAGGACGA
195 CTCTATTGGTTCTTGGACGAACTTTC-AAACTTGTCAAAGGACGA
* * *** *
10249170 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGAT
1 ACATCCGAACTAGTCAAACTTTTACGATTTC-TTTATAACTTCGATTCCAAAAAGCATTCAAGAT
* * * * * *
10249235 GATCCACTCTTTC-GAGCAATTTTTTGAGCAAT-CCATGCTC-GAGAAATCGCATAATTTTGTCT
65 AATCCACTCCTTCTGA--AATTTTTCGAAC-ATGCCATGCTCGGA-AAATCCCATAATTTGGTCT
* * *
10249297 AAACAGTTTGTCTTTTTGTAAACAAGTTTCGGTC-CTTGAATTAAAAACTTATTTACGTGAGTAT
126 AAACAGTTTGTCATTTTGTAAACAAGTTTCGG-CACTTAAATTAAAAACTTATTTACGTGAGAAT
*
10249361 TGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
190 TGGTTCTCTATTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10249404 AACTTATTTA
Statistics
Matches: 201, Mismatches: 25, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
238 32 0.16
239 38 0.19
240 107 0.53
241 24 0.12
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (238 bp):
ACATCCGAACTAGTCAAACTTTTACGATTTCTTTATAACTTCGATTCCAAAAAGCATTCAAGATA
ATCCACTCCTTCTGAAATTTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAACA
GTTTGTCATTTTGTAAACAAGTTTCGGCACTTAAATTAAAAACTTATTTACGTGAGAATTGGTTC
TCTATTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGGACGA
Found at i:10249527 original size:62 final size:62
Alignment explanation
Indices: 10249339--10249527 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10249329 TCCTTGAATT
* * * *
10249339 AAAAACTTATTTACGTGAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
10249401 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * * *
10249463 AAAAACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10249525 AAA
1 AAA
10249528 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10249780 original size:62 final size:62
Alignment explanation
Indices: 10249678--10249804 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10249668 TCTTTCAATT
* * * * *
10249678 AAAAACTTATTTACGTGAGAATTGGTTCTCTTTTAATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
* **
10249740 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
10249802 AAA
1 AAA
10249805 CTTTTATGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAATTCTTGGACGAACATCCAAACTTGTC
Found at i:10249785 original size:339 final size:340
Alignment explanation
Indices: 10249164--10249788 Score: 898
Period size: 339 Copynumber: 1.8 Consensus size: 340
10249154 ACTTGTCAAA
* ***
10249164 GGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATT
1 GGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATT
* * * ** * *
10249229 CGAGATGATCCACTCTTTCGAGCAATTTTTTGAGCAATCCATGCTCGAGAAATCGCATAATTTTG
66 CAAGATAATCCACTCTTTCGAGAAATTTTTCAAACAATCCATGCTCGAGAAATCGCATAATTTGG
* * *
10249294 TCTAAACAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGT
131 TCTAAACAGTTTGTCATTTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTACGTGAGA
** * * *
10249359 ATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATT
196 ATTGGTTCTCTATTAATTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATAAGAATT
10249424 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAACTTATTTACGTAAGAATCGTT
261 GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAACTTATTTACGTAAGAATCGTT
10249489 TCTCTCTTGCTTCTT
326 TCTCTCTTGCTTCTT
* *
10249504 GGACGAACATCCGATCTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATT
1 GGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATT
* * * * **
10249569 CAAGGTAATCCATTAC-TTCTAGAAATTTTTCAAACATTCCATGCTCG-GAAAATC-CATCGTTT
66 CAAGATAATCCACT-CTTTCGAGAAATTTTTCAAACAATCCATGCTCGAG-AAATCGCATAATTT
* * *
10249631 GGTCT-AACTAGTTTGTCATTTTGTAAACTAGTTTTGGTCTTTCAATTAAAAACTTATTTACGTG
129 GGTCTAAAC-AGTTTGTCATTTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTACGTG
* * *
10249695 AGAATTGGTTCTCTTTTAATTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGA
193 AGAATTGGTTCTCTATTAATTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATAAGA
10249760 ATTGTTTCTCTCTTGGTTCTTGGACGAAC
258 ATTGTTTCTCTCTTGGTTCTTGGACGAAC
10249789 ATCCAAACTT
Statistics
Matches: 249, Mismatches: 33, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
338 3 0.01
339 146 0.59
340 99 0.40
341 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (340 bp):
GGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGCATT
CAAGATAATCCACTCTTTCGAGAAATTTTTCAAACAATCCATGCTCGAGAAATCGCATAATTTGG
TCTAAACAGTTTGTCATTTTGTAAACAAGTTTCGGTCCTTCAATTAAAAACTTATTTACGTGAGA
ATTGGTTCTCTATTAATTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATAAGAATT
GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAACTTATTTACGTAAGAATCGTT
TCTCTCTTGCTTCTT
Found at i:10250038 original size:278 final size:278
Alignment explanation
Indices: 10249401--10251683 Score: 2308
Period size: 278 Copynumber: 8.2 Consensus size: 278
10249391 CAAACTTGTC
* * * *
10249401 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10249466 AACTTATTTACGTAAGAATCGTTTCTCTCTTGCTTCTTGGACGAACATCCGATCTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * ** * * *
10249531 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAAT
131 TTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAAT
* * ** * *
10249595 TTTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAAC
195 TTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAAC
* * *
10249659 TAGTTTTGGTCTTTCAATT
260 AAGTTTTGGTCCTTGAATT
* **
10249678 AAAAACTTATTTACGTGAGAATTGGTTCTCTTTTAATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10249743 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10249808 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10249873 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
10249938 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTGAATT
* *
10249956 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGCCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10250021 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
10250086 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10250151 TTTCAAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10250215 AAGTTTTGGTCCTTGAATT
260 AAGTTTTGGTCCTTGAATT
* *
10250234 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10250299 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
10250364 TTATGATTTCTTATATAACTTCGGTTCCTGAAGGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10250429 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAA
196 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10250493 AAGTTTTGGTCCTTGAATT
260 AAGTTTTGGTCCTTGAATT
* *
10250512 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10250577 AACTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * * ** * *
10250642 TTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAA
131 TTACGATTTCTTATATAAC-TTCGGTTCCTGAAAGTATTCAAGATG-ATCCATTCTTTCTAGCAA
* * * ***
10250706 TTTTTCGAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
194 TTTTTCGAACATTCCATGCTCGGGAAAT-CACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
* *
10250770 ACAAGTTTTGGTCTTTAAATT
258 ACAAGTTTTGGTCCTTGAATT
* * * * *
10250791 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGT--T
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10250852 AAAC-T-TTCACG--AG--TTCTTT-TATAACTTAGGTTCCTT--A--AAGTATTCAAGAC--GA
65 AAACTTATTTACGTAAGAATTGTTTCTCT--CTT-GGTT-CTTGGACGAA-CATCCAA-ACTTG-
** * * * * ** * ** *
10250904 TCCATTCCTTTGAGCAAATTTC---TA-AACATTCCATGCTCGGGAAA-TCACATC-ATTTGGTC
123 T-CA-AACTTTTA-C-GATTTCTTATATAAC-TT-C-GGTTCCTGAAAGT-A-TTCAAGATGATC
* * ** * * * ** * * * *
10250963 AAAATAGTT-T-GTC-ATTTTGT-AAATAAGTT--TTGGACTC--TTAATTAAATAACTTAGTTA
179 -CATTCTTTCTAG-CAATTTT-TCGAA-CA-TTCCAT-G-CTCGGGAAATCACATAA-TTTGAT-
* * * * * ** * * ** *
10251020 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-CTTTCGAACTTG--TC
235 C-T-A-AATAGTTTGTC-ATT--TT-GT-AAACAAGTTTTGGTCCTTGAATT
* * * * * * * *
10251069 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10251134 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * *
10251199 TTACGATTTCCTT-TATAGCTTCGGTTCTTGTAAGTATTCAAGATGATCCATTCTTT-TGAGCAA
131 TTACGATTT-CTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCT-AGCAA
* * * * **
10251262 TTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATTGTTTGTTTTTTTGTAAA
194 TTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAA
* *
10251327 CAAGTTTCGATCCTTGAATT
259 CAAGTTTTGGTCCTTGAATT
* * * *
10251347 AATAACTTTTTTACGTG-GCAATTTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTTAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * * *
10251411 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * * * *
10251476 TTTACGATTTCTTTTATAACTTCGGTT-CT-AACAGTATTTAAGTTAATCCATTCCTTCTAGAAA
130 TTTACGATTTCTTATATAACTTCGGTTCCTGAA-AGTATTCAAGATGATCCATTCTTTCTAGCAA
* * * ** * * * *
10251539 TTTTTTGAGA-AATCCACGCTCGAAAAATCCCATCATTTTG-TCTCAATAGTTTGCCATTTTGTA
194 TTTTTCGA-ACATTCCATGCTCGGGAAATCACAT-AATTTGATCTAAATAGTTTGTCATTTTGTA
* *
10251602 AACAAGTTTTGGTCTTTAAATT
257 AACAAGTTTTGGTCCTTGAATT
* * * *
10251624 AAAAACTTATTTACGT-ACTAATT-GTATCTC-CTTGGTTGTTGGATGAACTTTCGAATTTGT
1 AAAAACTTATTTACGTGA-GAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
10251684 TAAACTTTCA
Statistics
Matches: 1685, Mismatches: 236, Indels: 171
0.81 0.11 0.08
Matches are distributed among these distances:
269 5 0.00
270 16 0.01
271 26 0.02
272 27 0.02
273 16 0.01
274 11 0.01
275 5 0.00
276 51 0.03
277 317 0.19
278 919 0.55
279 160 0.09
280 18 0.01
281 8 0.00
282 2 0.00
283 22 0.01
284 25 0.01
285 28 0.02
286 12 0.01
287 12 0.01
288 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGTCCTTGAATT
Found at i:10250076 original size:62 final size:62
Alignment explanation
Indices: 10249956--10250082 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10249946 TCCTTGAATT
* * * *
10249956 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGCC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGCC
* * *
10250018 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGCC
10250080 AAA
1 AAA
10250083 CTTTTATGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGCC
Found at i:10250354 original size:62 final size:62
Alignment explanation
Indices: 10250234--10250360 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10250224 TCCTTGAATT
* ** * * *
10250234 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
* *
10250296 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
10250358 AAA
1 AAA
10250361 CTTTTATGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACAAACATCCAAACTTGTC
Found at i:10250587 original size:62 final size:62
Alignment explanation
Indices: 10250512--10250638 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10250502 TCCTTGAATT
* * * * * *
10250512 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACTAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAAAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10250574 AAAAACTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAAAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10250636 AAA
1 AAA
10250639 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAAAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10250993 original size:215 final size:217
Alignment explanation
Indices: 10250574--10251071 Score: 632
Period size: 215 Copynumber: 2.3 Consensus size: 217
10250564 CGAACTTGTC
* * * * *
10250574 AAAAACTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10250639 CTTTTAGGATTTCTTTTATAACTTTTGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
66 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
* * *
10250704 AATTTTTCGAACATTCCATGCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAA
131 AATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAA
*
10250769 AACAAGTTTTGGTCT-TTAAATT
196 AACAAGTTTTGGACTCTT-AATT
* * * * * *
10250791 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
**
10250855 CTTTCACGAGTTCTTTTATAAC-TTAGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTT-TGA
66 CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCT-A
*
10250917 GCAAATTTCT-AAACATTCCATGCTCGGGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
129 G-AAATTTCTCAAACATTCCATGCTCGGAAAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10250980 TGTAAATAAGTTTTGGACTCTTAATT
192 AAAAAACAAGTTTTGGACTCTTAATT
* *
10251006 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10251071 A
65 A
10251072 GACTTATTTA
Statistics
Matches: 239, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 2 0.01
215 102 0.43
216 80 0.33
217 55 0.23
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGA
AATTTCTCAAACATTCCATGCTCGGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAA
AACAAGTTTTGGACTCTTAATT
Found at i:10251108 original size:62 final size:62
Alignment explanation
Indices: 10251010--10251195 Score: 273
Period size: 62 Copynumber: 3.0 Consensus size: 62
10251000 TTAATTAAAT
* * * *
10251010 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10251072 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10251134 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10251196 CTTTTACGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10251814 original size:215 final size:214
Alignment explanation
Indices: 10251438--10251903 Score: 521
Period size: 215 Copynumber: 2.2 Consensus size: 214
10251428 TACTGTTTCA
* * * *
10251438 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTAGGTT
* ** ** *
10251503 CTAACAGTATTTAAGTTAATCCATTCCTTCTAGAAATTTTTTGAGAAATCCACGCTCGAAAAATC
66 CTAACAGTATTCAAGACAATCCATTCCTTCTAGAAA-TTTTCCAGAAATCCACACTCGAAAAATC
* * ** *
10251568 CCATCATTTTGTCTCAATAGTTTGCCATTTTGTAAACAAGTTTTGGTCT-TTAAATTAAAAACTT
130 ACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTT-AATTAAAAACTT
* *
10251632 ATTTACGT-ACTAATTGTATCT
194 AGTTACGTGA-GAATTGTATCT
* * * *
10251653 C-CTTGGTTGTTGGATGAACTTTCGAATTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTAGGTT
* * * * *
10251717 CCTTATAGTATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCA-AACATTCCATACTCGAGA
66 -CTAACAGTATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAGAA-A-TCCACACTCGAAA
* * *
10251779 AATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTCATTAATAA
126 AATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAA
*
10251844 CTTAGTTACGTGAGAATTGTTTCT
191 CTTAGTTACGTGAGAATTGTATCT
* * *
10251868 CTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10251904 AACTTATTTA
Statistics
Matches: 206, Mismatches: 37, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
213 2 0.01
214 61 0.30
215 110 0.53
216 33 0.16
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (214 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACAAGTTCTTTTATAACTTAGGTT
CTAACAGTATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAGAAATCCACACTCGAAAAATCA
CATCATTTGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAG
TTACGTGAGAATTGTATCT
Found at i:10251940 original size:62 final size:62
Alignment explanation
Indices: 10251842--10252151 Score: 521
Period size: 62 Copynumber: 5.0 Consensus size: 62
10251832 GTTCATTAAT
* *
10251842 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10251904 AACTTATTTACGTGACAATTGTTTCTCTCTAGGTTCTTGGACGAACTTCTAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10251966 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10252028 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10252090 AACTTATTTACGTGAGAATTGTTTCTCTGTTGGTACTTGGATGAACATCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10252152 CTTTTATGAT
Statistics
Matches: 233, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 233 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10252395 original size:62 final size:61
Alignment explanation
Indices: 10252303--10252491 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
10252293 TCCCTGAGTT
* * ** *
10252303 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * *
10252365 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * * *
10252427 AAAAAATTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10252489 AAA
1 AAA
10252492 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 3 0.03
62 105 0.95
63 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10252583 original size:340 final size:340
Alignment explanation
Indices: 10251963--10253448 Score: 2009
Period size: 340 Copynumber: 4.4 Consensus size: 340
10251953 TAAACTTGTC
* * * *
10251963 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10252028 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
* * * * * *
10252093 TTATTTACGTGAGAATTGTTTCTCTGTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * ** * *
10252158 TGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTAATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
* * * *
10252223 TGAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTC-TCTTTGTAAACAAG
261 CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCAT-TTTGTAAACAAG
* *
10252287 TTTTGGTCCCTGAGTT
325 TTTTGGTCCTTGAATT
* * *
10252303 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10252368 AACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAACTTCTGAACTTGTCAAAAAA
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
* *
10252433 TTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
*
10252498 CGATTT-TTTATATAACTTCGGTTAATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTA
196 CGATTTCTTT-TATAACTTCGGTTAATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
*
10252562 TCGAACATTCCATGCTCGGGAAGTCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAG
260 TCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAG
10252627 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTGAATT
*
10252643 AAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 -AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10252708 AAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
10252773 ATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
130 ATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
** * * * *
10252838 ACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTTT
195 ACGATTTCTTTTATAACTTCGGTTAATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
* * * * * *
10252903 TTGAGCAATCCATGCTCGAGAAATCGCATAATTTTG-TCTAAACAGTTTGTCTTTTTGTAAACAA
260 TCGAACATTCCATGCTCGGGAAATCGCATAA-TTTGATCTAAATAGTTTGTCATTTTGTAAACAA
*
10252967 GTTTCGGTCCTTGAATT
324 GTTTTGGTCCTTGAATT
** * * * * *
10252984 AAAAACTTATTTAAGTAAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10253049 AACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAAAAC
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
** *
10253114 TTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10253179 CGATTTCTTTTATAACTTCGATTCCAA--AAAGTATTCAAGGTAATCCATTAC-TTCTAGAAAAT
196 CGATTTCTTTTATAACTTCGGTT--AATGAAAGTATTCAAGATGATCCATT-CTTTCGAGAAATT
* * ** * * *
10253241 TTTCAAACATTCCATGCTCGGAAAATC-CATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACC
258 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
* *
10253305 AGTTTTGGTCTTTCAATT
323 AGTTTTGGTCCTTGAATT
* *
10253323 AAAAACTTATTTA-TGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAACTTGTCAA
1 AAAAACTTATTTACT-TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * *
10253387 AAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT-CAAACTTGTCAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10253449 CTTTTATGAT
Statistics
Matches: 1013, Mismatches: 123, Indels: 22
0.87 0.11 0.02
Matches are distributed among these distances:
338 15 0.01
339 141 0.14
340 543 0.54
341 307 0.30
342 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAA
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTAATGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTT
CGAACATTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTGAATT
Found at i:10252735 original size:681 final size:678
Alignment explanation
Indices: 10251963--10253448 Score: 2108
Period size: 681 Copynumber: 2.2 Consensus size: 678
10251953 TAAACTTGTC
* * * *
10251963 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10252028 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAA
* * * *
10252093 TTATTTACGTGAGAATTGTTTCTCTGTTGGTACTTGGATGAACATCCAAACTTTTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTACTTGGACGAACATCCAAACTTGTCAAACTTTTA
* * * * *
10252158 TGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTTTT
* * * *
10252223 TGAACATTCCATGCTCGGGAAATCACATAA-TTTGATCTGAATAATTTGTCTCTTTGTAAACAAG
261 TGAACAATCCATGCTCGAGAAATCACATAATTTTG-TCTAAACAATTTGTCTCTTTGTAAACAAG
* * ** * *
10252287 TTTTGGTCCCTGAGTTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGCTCTTGGACGAAC
325 TTTCGGTCCCTGAATTAAAAACTTAATTAAGTAAGAATTGGCTCTCTATTGGCTCTTGGACGAAC
* * *
10252352 TTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTTTTGGACGAAC-TT
390 TTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTCTCTCTTAGTTCTTGGACGAACTTT
* * ** *
10252416 CTGAACTTGTCAAAAAATTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCG
455 C-GAACTTCTCAAAAAATTATTTACGTAAGAATCATTTCTCTCTGGCTTCTTGGACGAACATCCG
* *
10252481 AACTTGTCAAACTTTTACGATTT-TTTATATAACTTCGGTT-AATGAAAGTATTCAAGATGATCC
519 AACTTGTCAAACTTTTACGATTTCTTT-TATAACTTCGATTCAA--AAAGTATTCAAGATAATCC
* * *
10252544 ATT-CTTTCGAG-AAATTTATCGAACATTCCATGCTCGGGAAGTCGCATAATTTGATCTAAATAG
581 ATTAC-TTCGAGAAAATTT-TCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAG
*
10252607 TTTGTCATTTTGTAAACAAGTTTTGGTCCTTGAATT
643 TTTGTCATTTTGTAAACAAGTTTTGGTCCTTCAATT
*
10252643 AAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 -AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * *
10252708 AAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAAC-ATGTCAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTA-GTCAAAA
* *
10252772 AATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 AATTATTTACGTAAGAATTGTTTCTCTCTTGGTACTTGGACGAACATCCAAACTTGTCAAACTTT
* *
10252837 TACGATTTCTTTTATAACTTCGGTTCTTGAAAGCATTCGAGATGATCCACTCTTTCGAGCAATTT
194 TACGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTT
* * * *
10252902 TTTGAGCAATCCATGCTCGAGAAATCGCATAATTTTGTCTAAACAGTTTGTCTTTTTGTAAACAA
259 TTTGAACAATCCATGCTCGAGAAATCACATAATTTTGTCTAAACAATTTGTCTCTTTGTAAACAA
* * * * * *
10252967 GTTTCGGTCCTTGAATTAAAAACTTATTTAAGTAAGTATTGGTTCTCTATTGGTTCTTGGATGAA
324 GTTTCGGTCCCTGAATTAAAAACTTAATTAAGTAAGAATTGGCTCTCTATTGGCTCTTGGACGAA
*
10253032 CTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTT
389 CTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTCTCTCTTAGTTCTTGGACGAACTT
* *
10253097 TCGAACTTCTCAAAAACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCG
454 TCGAACTTCTCAAAAAATTATTTACGTAAGAATCATTTCTCTCTGGCTTCTTGGACGAACATCCG
*
10253162 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCAT
519 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATT-CAAAAAGTATTCAAGATAATCCAT
* ** * *
10253227 TACTTCTAGAAAATTTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGT
583 TACTTCGAGAAAATTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGT
* *
10253292 CATTTTGTAAACCAGTTTTGGTCTTTCAATT
648 CATTTTGTAAACAAGTTTTGGTCCTTCAATT
* *
10253323 AAAAACTTATTTA-TGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAACTTGTCAA
1 AAAAACTTATTTACT-TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10253387 AAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT-CAAACTTGTCAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAA
10253449 CTTTTATGAT
Statistics
Matches: 711, Mismatches: 84, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
678 11 0.02
679 99 0.14
680 49 0.07
681 533 0.75
682 17 0.02
683 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (678 bp):
AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAA
TTATTTACGTAAGAATTGTTTCTCTCTTGGTACTTGGACGAACATCCAAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCACTCTTTCGAGCAATTTTT
TGAACAATCCATGCTCGAGAAATCACATAATTTTGTCTAAACAATTTGTCTCTTTGTAAACAAGT
TTCGGTCCCTGAATTAAAAACTTAATTAAGTAAGAATTGGCTCTCTATTGGCTCTTGGACGAACT
TTCAAACTTGTCAAAAACTTATTTACATGAGTACTGTTTCTCTCTTAGTTCTTGGACGAACTTTC
GAACTTCTCAAAAAATTATTTACGTAAGAATCATTTCTCTCTGGCTTCTTGGACGAACATCCGAA
CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCAAAAAGTATTCAAGATAATCCATTAC
TTCGAGAAAATTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCCTTCAATT
Found at i:10252741 original size:62 final size:62
Alignment explanation
Indices: 10252644--10252832 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10252634 CCTTGAATTA
* * * *
10252644 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10252706 AAAAACTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
10252768 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10252830 AAA
1 AAA
10252833 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10253082 original size:62 final size:62
Alignment explanation
Indices: 10252984--10253172 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 62
10252974 TCCTTGAATT
* * * * *
10252984 AAAAACTTATTTA-AGTAAGTATTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACA-TAAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
10253046 AAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACATAAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10253108 AAAAACTTATTTACGTAAG-AATCATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATAAGTAAT-GTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10253170 AAA
1 AAA
10253173 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 2 0.02
62 107 0.97
63 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGTAATGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10253675 original size:62 final size:62
Alignment explanation
Indices: 10253600--10253726 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10253590 TCCTTGAATT
* * * *
10253600 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10253662 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10253724 AAA
1 AAA
10253727 CTTTTAGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10253848 original size:278 final size:277
Alignment explanation
Indices: 10253046--10254215 Score: 1715
Period size: 278 Copynumber: 4.2 Consensus size: 277
10253036 CAAACTTGTC
* * * * * *
10253046 AAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
10253111 AACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * * *
10253176 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAAA
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATT-CTTTCTAGAAAT
** * * *
10253240 TTTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACC
195 TTTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
* *
10253305 AGTTTTGGTCTTTCAATT
260 AGTTTTGGTCCTTGAATT
* *
10253323 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10253388 AACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT-CAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * * ** *
10253452 TTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCTTTCTAGAAATT
* * *
10253517 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
196 TTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10253581 AAGTTTTGGTCCTTGAATT
259 AAGTTTTGGTCCTTGAATT
10253600 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10253665 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
** *
10253730 TTAGGATTTCTTTTATAACTTCGTTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCTTTCTAGAAATT
* * *
10253795 TTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAAC
196 TTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAGTTTGTCATT-TTGTAAAC
10253859 AAGTTTTGGTCCTTGAATT
259 AAGTTTTGGTCCTTGAATT
10253878 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
10253943 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10254008 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCTAGAAAT
131 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATG-ATCCATTCTTTCTAGAAAT
* * * ***
10254072 TTTTCAAACATTCCATTCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAAAC
195 TTTTCAAACATTCCATGCTCGGAAAAT-CCATAATTTGATCTAAATAGTTTGTCATTTTGTAAAC
* * *
10254137 AAGTTTTGTTCTTTAAATT
259 AAGTTTTGGTCCTTGAATT
* * * * *
10254156 AAAAAGTTATTTACGTGGGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTGGACGAACTTTCGAACTTGT
10254216 TAAACTTTCA
Statistics
Matches: 824, Mismatches: 61, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
275 1 0.00
276 95 0.12
277 284 0.34
278 441 0.54
279 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATGATCCATTCTTTCTAGAAATT
TTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCCTTGAATT
Found at i:10253953 original size:62 final size:62
Alignment explanation
Indices: 10253878--10254004 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10253868 TCCTTGAATT
* * * *
10253878 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
* *
10253940 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
10254002 AAA
1 AAA
10254005 CTTTTAGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTC
Found at i:10254202 original size:555 final size:554
Alignment explanation
Indices: 10253046--10254215 Score: 1715
Period size: 554 Copynumber: 2.1 Consensus size: 554
10253036 CAAACTTGTC
* * * * * *
10253046 AAAAACTTATTTACATGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
10253111 AACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
*
10253176 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAAAT
131 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTACTTCTAGAAAAT
** * * *
10253241 TTTCAAACATTCCATGCTCGGAAAATCCATCGTTTGGTCTAACTAGTTTGTCATTTTGTAAACCA
196 TTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
* *
10253306 GTTTTGGTCTTTCAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAA
261 GTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAA
* *
10253371 CTTTTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGATGAACAT
326 CTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACAT
* **
10253436 CAAACTTGTCAAACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCC
391 CAAACTTGTCAAACTTTTAGGATTTCTTATATAACTTCGGTTCCAAAAAGTATTCAAGATGATCC
* * * * *
10253501 ATTCTTTCTAGCAATTTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTT
456 ATTCCTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAGTT
*** *
10253566 TGTCTTCTTGTAAACAAGTTTTGGTCCTTGAATT
521 TGTCTTCTAAAAAACAAGTTTTGGTCCTTAAATT
* *
10253600 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10253665 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
* * ** * * *
10253730 TTAGGATTTCTTTTATAACTTCGTTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTAGCAAT
131 TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTAC-TTCTAGAAAA
* * *
10253794 TTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTC-TTCTTGTAAA
195 TTTTCAAACATTCCATGCTCGGAAAATC-CATAATTTGATCTAAATAGTTTGTCATT-TTGTAAA
*
10253858 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
258 CAAGTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
*
10253923 GAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
323 GAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
* *
10253988 CATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGA-G
388 CAT-CAAACTTGTCAAACTTTTAGGATTTCTTATATAACTTCGGTTCCAAAAAGTATTCAAGATG
* * *
10254052 AATCCATTCCTTCTAGAAATTTTTCAAACATTCCATTCTCGGAAAATGC-CATCATTTGGTCTAA
452 -ATCCATTCCTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAAT-CACATAATTTGATCTAA
* *
10254116 ATAGTTTGTCATT-TAAAAAACAAGTTTTGTTCTTTAAATT
515 ATAGTTTGTC-TTCTAAAAAACAAGTTTTGGTCCTTAAATT
* * *
10254156 AAAAAGTTATTTACGTGGGAATT-GTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGT
10254216 TAAACTTTCA
Statistics
Matches: 552, Mismatches: 56, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
553 1 0.00
554 201 0.36
555 184 0.33
556 163 0.30
557 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTAGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAATCATTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTACTTCTAGAAAAT
TTTCAAACATTCCATGCTCGGAAAATCCATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAA
CTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACAT
CAAACTTGTCAAACTTTTAGGATTTCTTATATAACTTCGGTTCCAAAAAGTATTCAAGATGATCC
ATTCCTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAGTT
TGTCTTCTAAAAAACAAGTTTTGGTCCTTAAATT
Found at i:10254358 original size:215 final size:216
Alignment explanation
Indices: 10253940--10254436 Score: 621
Period size: 215 Copynumber: 2.3 Consensus size: 216
10253930 CGAACTTGTC
* * * *
10253940 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10254005 CTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
* * * *
10254070 ATTTTTCAAACATTCCATTCTCGGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTAAAAA
131 ATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
**
10254135 ACAAGTTTTGTTCT-TTAAATT
196 ACAAGTTTTGGACTCTT-AATT
* * * * * *
10254156 AAAAAGTTATTTACGTGGGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
**
10254220 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGA-GAATCCATTCCTTCT-AG
10254283 CAAATTTCT-AAACATTCCATGCTCA-AGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
129 -AAATTTCTCAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
*** *
10254345 TGTAAATAAGTTTTGGACTCTTAATT
191 AAAAAACAAGTTTTGGACTCTTAATT
* *
10254371 AAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10254436 A
65 A
10254437 GACTTATTTA
Statistics
Matches: 238, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
214 3 0.01
215 146 0.61
216 59 0.25
217 30 0.13
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGAGAATCCATTCCTTCTAGAA
ATTTCTCAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTAAAAA
ACAAGTTTTGGACTCTTAATT
Found at i:10254597 original size:122 final size:124
Alignment explanation
Indices: 10254375--10254620 Score: 311
Period size: 122 Copynumber: 2.0 Consensus size: 124
10254365 TTAATTAAAT
* * * *
10254375 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAGAC
1 AACTTAGTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAAC
* ** * *
10254440 TTATTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATATACATGACAACTGTTTTACTCTTGGCTCTTGGACGAACATCCAAACTTGTCAAA
* *
10254499 AACTTATTTACGTGAGAA-T-TATCTCTCTTGGTTCTTGGACT-AACATCCGAATTTGTCAAAAA
1 AACTTAGTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAAAA
* * * *
10254561 CTTATATACGTTACAATTGTTTCT-CTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
65 CTTATATACATGACAACTGTTT-TACTCTTGGCTCTTGGACGAACATCCAAACTTGTCAAA
10254621 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
122 85 0.81
123 3 0.03
124 17 0.16
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAAC
TTATATACATGACAACTGTTTTACTCTTGGCTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10254623 original size:60 final size:61
Alignment explanation
Indices: 10254375--10254620 Score: 291
Period size: 62 Copynumber: 4.0 Consensus size: 61
10254365 TTAATTAAAT
* * * *
10254375 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * *
10254436 AGACTTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 A-ACTTATTTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AA
* * *
10254499 AACTTATTTACGTGAGAA-T-TATCTCTCTTGGTTCTTGGACTAACATCCGAATTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AA
* * * *
10254559 AACTTATATACGTTACAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
10254620 A
1 A
10254621 CTTTTACGAT
Statistics
Matches: 158, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
60 49 0.31
61 8 0.05
62 98 0.62
63 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
Found at i:10255364 original size:62 final size:62
Alignment explanation
Indices: 10255266--10255450 Score: 318
Period size: 62 Copynumber: 3.0 Consensus size: 62
10255256 GTTAATTAAT
* *
10255266 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10255328 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10255389 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10255451 CTTTTATGAT
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
61 58 0.50
62 59 0.50
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10255418 original size:892 final size:893
Alignment explanation
Indices: 10253600--10257240 Score: 4770
Period size: 893 Copynumber: 4.1 Consensus size: 893
10253590 TCCTTGAATT
* * * * *
10253600 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* * *
10253665 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATATACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * * *
10253730 TTAGGATTTCTTTTATAACTTCGTTTCCTGAAAGTATTCAAGATGATCCATTCTTTCT-AGCAAT
131 TTACGA-TTCCTTTAT-GCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTT-TGAGCAAT
* * * * *
10253794 TTTTCGAACATTTCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTCTTGTAAAC
193 TTTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* * * * *
10253859 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACG
258 AAGTTTCGATCCTTGAATTAATAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACA
* * *
10253924 AACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
322 AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAAC
* * * *
10253989 ATCCAAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGAGAA
387 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAA
* * * * *
10254054 TCCATTCCTTCTAGAAA-TTTTTCAAACATTCCATTCTCGGAAAATGCCATCATTTGGTCTAAAT
452 TCCATTCCTTCTAGAAATTTTTTGAAA-AATCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
** * * **
10254118 AGTTTGTCATTTAAAAAACAAGTTTTGTTCTTTAAATTAAAAAGTTATTTACGTGGGAATTGTAT
516 AGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACGAATTGTAT
*
10254183 CTCCTAGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACGAGTTCTTTTATAACTTAGGT
581 CTCCTAGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGT
* *
10254248 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCTAAACATTCCATGCTCAAGAAA
646 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAA
*
10254313 TCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAAGTTTTGGACTCTTAATTAAATAAC
711 TCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAAC
* * * * *
10254378 TTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAGACTTA
776 TTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
*
10254443 TTTACATGAGTACTGTTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
841 TTTACATGAGAACTGTTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10254496 AAAAACTTATTTACGTGAGAA-T-TATCTCTCTTGGTTCTTGGACTAACATCCGAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* *
10254559 AACTTATATACGTTACAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATATACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
10254624 TTACGATTTCCTTTATAGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
131 TTACGA-TTCCTTTAT-GCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
10254689 TTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-TTTTTGTAAACA
194 TTTTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* *
10254753 AGTTTCGATCCTTGAATTAATAACTTTTTTACGTG-GCAATTCGTTCTCTCTTGGTTCTTGGACG
259 AGTTTCGATCCTTGAATTAATAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACA
* * *
10254817 AACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC
322 AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAAC
* * * *
10254882 TTTCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAGTATTTAAGTTAA
387 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAA
* * *
10254946 TCCTTTCCTTCTAGAAATTTTTTGAAAAATCCATGCTCGAAAAATCCCATCATTTTGTCTCAATA
452 TCCATTCCTTCTAGAAATTTTTTGAAAAATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
* *
10255011 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACTAATTGTATC
517 GTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACGAATTGTATC
* * * * *
10255076 TCCTTGGTTGTTGGATGAACTTTCGAATTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTT
582 TCCTAGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTT
* * *
10255141 CCTTACAGTAATCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACACTCCATGCTCGAGAAAT
647 CCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAAT
*
10255206 CACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATT-AATAACT
712 CACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAACT
10255270 TAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
777 TAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* *
10255335 TTACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTT-CAAACTTGTC
842 TTACATGAGAACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10255386 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGA-TGAACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAA
*** * * * * * **** * * * ** *
10255450 ACTTTTATGATTTCTTTTATAACTTCGGTTC-CTGAAAG-TATT-CAAGATGATCC-ATTCTTTC
65 AAACTTAT-A-TAC-GTAAGAA-TT-GTTTCTCTCTTGGCTCTTGGACGAACATCCGA-AC-TT-
* * * * *
10255511 GAGCAAATTTTTGAAC-ATTCC---ATGC-TCGG-----GAAA-TCA--CAAAACTTGATCTGAA
122 G-TCAAACTTTT--ACGATTCCTTTATGCTTCGGTTCTTGAAAGT-ATTCAAGA--TGATC-CAT
** * * * * * * ** * **
10255563 TAATTTG-TC--TTTTTGTAAACAAGTT--TTGGTCCCTGAATTAAAAGCTTAA-TTACT-TGAG
180 TCTTTTGAGCAATTTTT-TGAAC-A-TTCCAT-G-CTCGGGA--AATCGCATAATTTGGTCT-A-
* * * * * * *
10255621 AATTGGTTCTCTCTTGGCTCTTG--GACGAACTTTCGA-ACTTG--TCAA-AAGCTTATTTACAT
236 AA-TAGTT-TGTCTT---T-TTGTAAAC-AAGTTTCGATCCTTGAATTAATAA-CTTATTTACGT
* * * * * * *
10255680 GAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTCAAAAAATTATTTACGTAAG
293 GAGAATTG-TTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTTATTTACATAAG
* * *
10255745 AATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
357 AACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
* * *
10255810 AACTTCGGTTTTCCAAAAAGTATTCATGATAATCCATTCCTTCTAGAAATTTTTTGAACATTCCA
422 AACTTCGG--TTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTGAAAAATCCA
*
10255875 TGCTC-AGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTT
485 TGCTCGA-AAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTT
*
10255939 AAATTAAAAAGTTATTTACGTGA-GAATTGTATCTCCTAGGTTCTCGGACGAACTTTCGAACTTG
549 AAATTAAAAACTTATTTACGT-ACGAATTGTATCTCCTAGGTTCTCGGACGAACTTTCGAACTTG
* *
10256003 TTAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCTATTCCTTT
613 TTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT
*
10256068 GAGCAAATTTCTAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
678 GAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
* * *
10256133 TGTAAATAAGTTTTGGACTCTTAATTAAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTT
743 TGTAAACAAGTTTTGGACTCTTAATTAAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTT
* * *
10256198 CTTGGACGAACTTTCGAACTTGTCAAAGAA-TTATTTACATGAGTACTGTTTTACTCTTGGTTCT
808 CTTGGACGAACTTCCAAACTTGTCAAA-AACTTATTTACATGAGAACTGTTTTACTCTTGGTTCT
10256262 TGGACGAACTTCCAAACTTGTC
872 TGGACGAACTTCCAAACTTGTC
*
10256284 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
*
10256349 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATATACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
10256414 TTACGATTCCTTTATGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTT
131 TTACGATTCCTTTATGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTT
* * * * *
10256479 TGGAGCATTCCATGCTCGGGAAATCGCATAATTTGGCCTAAGTAGTTTGTTTTTTTGTAAACAAG
196 TTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
*
10256544 TTTCGATCCTTGAATTAATAACTTTTTTACGTG-GCAATTTGTTCTCTCTTGGTTCTTGGACAAA
261 TTTCGATCCTTGAATTAATAACTTATTTACGTGAG-AA-TTGTTCTCTCTTGGTTCTTGGACAAA
* * * * * * *
10256608 CTTTCGAACTTGTTAAAGACTCATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTT
324 CTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACAT
* * * *
10256673 TCGAACTTGTCAAACTTTTACGATATCTTTTATAACTTCGGTTCC-AAAAGTATTTAAGTTAATC
389 CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATC
* * * *
10256737 CTTTCCTTCTAGAAATTTTTTGAAAAATCCACGCTCGAAAAATCCCATCATTTTGTCTCAATAGT
454 CATTCCTTCTAGAAATTTTTTGAAAAATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGT
* *
10256802 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACTAATTGTATCTC
519 TTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACGAATTGTATCTC
* * * * *
10256867 CTTGGTTGTTGGATGAACTTTCGAATTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCC
584 CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCC
* **
10256932 TTACAGTATTCAAGACGATCCATTCCTTTGATTAAATTTCCAAACATTCCATGCTCGAGAAATCA
649 TTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCA
* *
10256997 TATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATT-AATAACTTA
714 CATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAACTTA
10257061 GTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
779 GTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
* *
10257126 ACGTGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
844 ACATGAGAACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10257176 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGA-TGAACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAA
10257240 A
65 A
10257241 TTTTTATGGT
Statistics
Matches: 2373, Mismatches: 283, Indels: 182
0.84 0.10 0.06
Matches are distributed among these distances:
885 9 0.00
886 6 0.00
887 13 0.01
888 13 0.01
889 4 0.00
890 40 0.02
891 114 0.05
892 524 0.22
893 638 0.27
894 230 0.10
895 36 0.02
896 485 0.20
897 131 0.06
898 85 0.04
899 6 0.00
900 13 0.01
901 13 0.01
902 4 0.00
903 9 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (893 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
AACTTATATACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTCCTTTATGCTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTT
TTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
TTTCGATCCTTGAATTAATAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACAAACT
TTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCC
GAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCA
TTCCTTCTAGAAATTTTTTGAAAAATCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTT
GTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTACGAATTGTATCTCCT
AGGTTCTCGGACGAACTTTCGAACTTGTTAAACTTTCACAAGTTCTTTTATAACTTAGGTTCCTT
AAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACA
TCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTCTTAATTAAATAACTTAGT
TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTAC
ATGAGAACTGTTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10255705 original size:62 final size:62
Alignment explanation
Indices: 10255602--10255790 Score: 234
Period size: 62 Copynumber: 3.0 Consensus size: 62
10255592 TCCCTGAATT
* * * * *
10255602 AAAAGCTTAATTACTTGAGAATTGGTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTC
1 AAAAGCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10255664 AAAAGCTTATTTACATGAGTATTGTTTCTCACTTGGTTCTTGGACAAAGTTCCGAACATGTC
1 AAAAGCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
** * * * *
10255726 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAGCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10255788 AAA
1 AAA
10255791 CTTTTACGAT
Statistics
Matches: 106, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (62 bp):
AAAAGCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10256110 original size:215 final size:217
Alignment explanation
Indices: 10255726--10256224 Score: 643
Period size: 215 Copynumber: 2.3 Consensus size: 217
10255716 CGAACATGTC
* * * *
10255726 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10255791 CTTTTACGATTTCTTTTATAACTTCGGTTTTCCAAAAAGTATTCATGATAATCCATTCCTTCTAG
66 CTTTCACGAGTTCTTTTATAACTTAGG-TTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAG
* * *
10255856 AAATTTTTTGAACATTCCATGCTCAGAAAATGCCATCATTTGGTCTAAATAGTTTGTCATTTTGA
130 AAATTTTCTAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTTGA
*
10255921 AAACAAGTTTTGGTCT-TTAAATT
195 AAACAAGTTTTGGACTCTT-AATT
* * * * *
10255944 AAAAAGTTATTTACGTGAGAATTGTATCTC-CTAGGTTCTCGGACGAACTTTCGAACTTGTTAAA
1 AAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
10256008 CTTTCACGAGTTCTTTTATAACTTAGG-TTCCTTAAAGTATTCAAGACGATCTATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGGTTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
10256071 CAAA-TTTCTAAACATTCCATGCTC-GAGAAAT-CACATCATTTGGTCAAAATAGTTTGTCATTT
130 -AAATTTTCTAAACATTCCATGCTCAGA-AAATGC-CATCATTTGGTCAAAATAGTTTGTCATTT
* *
10256133 TGTAAATAAGTTTTGGACTCTTAATT
192 TGAAAACAAGTTTTGGACTCTTAATT
* * *
10256159 AAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAA-AAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10256224 A
65 A
10256225 GAATTATTTA
Statistics
Matches: 243, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
214 4 0.02
215 101 0.42
216 28 0.12
217 83 0.34
218 27 0.11
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
AATTTTCTAAACATTCCATGCTCAGAAAATGCCATCATTTGGTCAAAATAGTTTGTCATTTTGAA
AACAAGTTTTGGACTCTTAATT
Found at i:10256267 original size:62 final size:62
Alignment explanation
Indices: 10256163--10256410 Score: 347
Period size: 62 Copynumber: 4.0 Consensus size: 62
10256153 TTAATTAAAT
* * *
10256163 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10256225 GAA-TTATTTACATGAGTACTGTTT-TACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 -AACTTATTTACATGAGAATTGTTTCT-CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10256287 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10256349 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10256411 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
61 3 0.02
62 160 0.96
63 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Done.