Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 47 of 144
Found at i:10257153 original size:62 final size:62
Alignment explanation
Indices: 10257055--10257240 Score: 327
Period size: 62 Copynumber: 3.0 Consensus size: 62
10257045 GTTAATTAAT
* *
10257055 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10257117 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10257179 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10257241 TTTTTATGGT
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 119 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10257651 original size:285 final size:280
Alignment explanation
Indices: 10257114--10257803 Score: 980
Period size: 285 Copynumber: 2.5 Consensus size: 280
10257104 CAAACTTGTC
* * *
10257114 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10257179 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTACTTGGATG-A-ACATCCAAACTTGTCAAAT
66 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAAAC
10257242 TTTTATGGTTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
131 TTTTATGGTTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
* * **
10257307 TTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTGAATAATTTGTCTTTTTGTAAA
196 TTTTTCGAACAGTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCATCTTTTTGTAAA
* * *
10257372 CAAGTTTTGGCCCCTGAATT
261 CAAGCTTCGACCCCTGAATT
* * *
10257392 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGG-T-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
*
10257457 AAAACTTATTTACATGAGTATTGTTTCTCTCTTGCTTCTTGGATGAACAGTTCATCCAAACTTGT
64 AAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACA---CATCCAAACTTGT
*
10257522 CAAACTTTTATGAG-TTCTTTTATAACTTC-AGTTCCTGAAAGTATTCAAGATGATCCATTCTTT
126 CAAACTTTTATG-GTTTCTTTTATAACTTCGA-TTCCTAAAAGTATTCAAGATGATCCATTCTTT
* *
10257585 CGAGCAATTTTTCGAACAGTCCATGCTCGGGAAATCGCATAATTTGATCTAAATAGTTCATCTTT
189 CGAGCAATTTTTCGAACAGTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCATCTTT
* *
10257650 TTGTAAACAAGCTTCGATCCTTGAATT
254 TTGTAAACAAGCTTCGACCCCTGAATT
* *
10257677 AAAAACTTATTTACGTG-GCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
** * * * *
10257741 AGTCTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACG-A-ACTTCCGAACTTGTCAAA
65 AAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAAA
10257804 AACTTATTTA
Statistics
Matches: 367, Mismatches: 35, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
278 37 0.10
279 1 0.00
280 75 0.20
281 2 0.01
282 2 0.01
283 74 0.20
284 3 0.01
285 172 0.47
286 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (280 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACACATCCAAACTTGTCAAAC
TTTTATGGTTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAACAGTCCATGCTCGGGAAATCACATAATTTGATCTAAATAATTCATCTTTTTGTAAA
CAAGCTTCGACCCCTGAATT
Found at i:10257748 original size:62 final size:61
Alignment explanation
Indices: 10257677--10257865 Score: 222
Period size: 62 Copynumber: 3.0 Consensus size: 61
10257667 TCCTTGAATT
* *
10257677 AAAAACTTATTTACGTGGCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGG-AATTGTTTCTATCTTTGTTCTTGGACGAACTTCCGAACTTGTC
** * * *
10257739 AAAGTCTTATTTACATGAGTATTGTTTC-ACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTG-GAATTGTTTCTA-TCTTTGTTCTTGGACGAACTTCCGAACTTGTC
* *
10257801 AAAAACTTATTTACGTAAGAATTGTTTCTCA-C-TTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-GGAATTGTTTCT-ATCTTTG-TTCTTGGACGAACTTCCGAACTTGTC
10257863 AAA
1 AAA
10257866 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
61 3 0.03
62 102 0.95
63 1 0.01
64 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGGAATTGTTTCTATCTTTGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10258066 original size:340 final size:342
Alignment explanation
Indices: 10257423--10258143 Score: 927
Period size: 340 Copynumber: 2.1 Consensus size: 342
10257413 TTGGCTCTCT
* * * * *
10257423 CTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
* *
10257488 TTGCTTCTTGGATGAACAGTTCATCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCAG
66 TTGCTTCTTGGACGAACA--TCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG
** * * * * * **
10257553 TTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAGTCCATGCTCGGGAA
129 TTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGTCCATACTCGAAAA
* *
10257618 ATCGCATAATTTGATCTAAATAGTTCATCTTTTTGTAAACAAGCTTCGATCCTTGAATTAAAAAC
194 ATCCCATAATTTGATCTAAATAGTTCATCATTTTGTAAACAAGCTTCGA-CCTTGAATTAAAAAC
* * *
10257683 TTATTTACGTGGCAATTGGTTCTATCTTTGTTCTTGGACGAACTT-TCGAACTTGTC-AAAGTCT
258 TTAGTTACGTGGCAATTGGTTCTATCTTAGTTCTTGGACGAACTTCT-AAACTTGTCAAAAG-CT
*
10257746 TATTTACATGAGTATTGTTTCA
321 TATTTACATGAGAATTGTTTCA
*
10257768 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCAC
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
* * *
10257833 TTGCTTCTTGGACG-A-A-CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATGACTTC-GTT
66 TTGCTTCTTGGACGAACATCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
* *
10257894 CCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGAAAAAA
131 CCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGTCCATACTCG-AAAAA
* * ** * * * *
10257959 TCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGA-CTATTAATTAATAAC
195 TCCCATAATTTGATCTAAATAGTTCATCATTTTGTAAACAAG-CTTCGACCT-TGAATTAAAAAC
* * *
10258023 TTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTGTTGGACGAACTTCTAAACTTGTCAAAAGCTT
258 TTAGTTACGTG-GCAATTGGTTCTATCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAGCTT
* *
10258087 ATTTACGTGAGAATTGTTTCT
322 ATTTACATGAGAATTGTTTCA
*
10258108 CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10258144 CTTTTACGAT
Statistics
Matches: 328, Mismatches: 42, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
339 55 0.17
340 189 0.58
341 10 0.03
343 1 0.00
344 1 0.00
345 72 0.22
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (342 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCAC
TTGCTTCTTGGACGAACATCATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTT
CCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGTCCATACTCGAAAAAT
CCCATAATTTGATCTAAATAGTTCATCATTTTGTAAACAAGCTTCGACCTTGAATTAAAAACTTA
GTTACGTGGCAATTGGTTCTATCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAGCTTATTT
ACATGAGAATTGTTTCA
Found at i:10258124 original size:62 final size:62
Alignment explanation
Indices: 10258022--10258143 Score: 208
Period size: 62 Copynumber: 2.0 Consensus size: 62
10258012 TAATTAATAA
* *
10258022 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGACGAACTTCTAAACTTGTCAAAAG
1 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAG
* *
10258084 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10258144 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (62 bp):
CTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAG
Found at i:10258788 original size:492 final size:491
Alignment explanation
Indices: 10257801--10258850 Score: 1416
Period size: 492 Copynumber: 2.1 Consensus size: 491
10257791 CGAACTTGTC
* * * *
10257801 AAAAACTTATTTACGTAAGAATTGTTTCTCACTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
10257866 CTTTTACGATTTCTTTTATGACTTCGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAA
64 CTCTCACGAGTTCTTTTATAACTTCGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAA
* * * *
10257931 TTTTTCGAACATTCCATACTCGAAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 TTTTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAA
* *
10257996 ACAAGTTTTGGACTATTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTGTTGGA
194 ACAAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGA
* * * *
10258061 CGAACTTCTAAACTTGTCAAAAGCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
259 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGA
* * *
10258126 ACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGT
324 ACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGAT
* * *
10258191 AATCCATTACTTCTAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTGTAACT
389 AATCCATTACTTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAAT
* * ** *
10258256 AGTTTGTCATTTTGTATACCAGTTTTTGTCTTTCAATT
454 AGTTTGTCATTTTGTAAACAAGTTTCGGTCCTTCAATT
* * * *
10258294 AAAAACTTATTCACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGT-TCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* ** *
10258359 TCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTT-TGAGCA
65 TCTCACGAGTTCTTTTATAACTT-CGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCT-AG-A
* * *
10258423 AA-TTTCCAAACATTCCATGCTCG-AGAAATCACATCATTTGGTC-AAAGTGGTTTGTCATTTTG
127 AATTTTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAA-TAGTTTGTCATTTTG
*
10258485 AAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTT
191 AAAACAAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTT
* *
10258550 GGACGAGCTTCCAAACTTGTCAAAAACTTGTTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA
256 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA
**
10258615 CGAACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-AGTTCCTGAAAGTATTCA
321 CGAACATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCAAAAAGTATTCA
* * * * *
10258679 AGATGATCCATT-CTTTCGAGCAATTTTTCGAATATTCCATGCTCGGGAAATCGCAT-ATTTGGT
385 AGATAATCCATTAC-TTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATC-CATCATTTGGT
*
10258742 CTAAATAGTTTGT-ATTTTTGTAAACAAGTTTCGGTCCTTGAATT
448 CTAAATAGTTTGTCA-TTTTGTAAACAAGTTTCGGTCCTTCAATT
* *
10258786 AAAAACTTATTTACGTG-GCAATTGGTTCTATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCT-CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10258850 A
63 A
10258851 GTCTTATTTA
Statistics
Matches: 486, Mismatches: 59, Indels: 24
0.85 0.10 0.04
Matches are distributed among these distances:
491 7 0.01
492 367 0.76
493 109 0.22
494 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (491 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
CTCACGAGTTCTTTTATAACTTCGTTCCAAAAAGAATTCAAGACAATCCATTCCTTCTAGAAATT
TTCCAAACATTCCATACTCGAAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGAAAAC
AAGTTTTGGACTATTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
ATCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAA
TCCATTACTTCGAGAAATTTTTCAAACATTCCATGCTCGGAAAATCCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAAGTTTCGGTCCTTCAATT
Found at i:10258889 original size:62 final size:62
Alignment explanation
Indices: 10258816--10258974 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 62
10258806 ATTGGTTCTA
* * ** * *
10258816 TCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAGTCTTATTTATA-TGAGTACTGTTTCAC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTA-AGTAAGAACTGTTTCAC
* *
10258878 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTC
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAACTGTTTCAC
* * *
10258940 TCTTGCTTCTTGGATGAACATCCGAACTTGTCAAA
1 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10258975 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 1 0.01
62 84 0.99
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAAGAACTGTTTCAC
Found at i:10258894 original size:277 final size:278
Alignment explanation
Indices: 10258349--10258912 Score: 692
Period size: 277 Copynumber: 2.0 Consensus size: 278
10258339 AACTTTCGAG
*
10258349 CTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTC
1 CTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAGACGATCCATTC
*
10258414 CTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAGTGGTTTGTC
66 CTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAGTAGTTTGTC
* * * * *
10258479 ATTTTGAAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTA
131 ATTTTGAAAACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACATGAGAATTGGTTCTATCTTA
* * * * *
10258544 GTTCTTGGACGAGCTTCCAAACTTGTCAAAAACTTGTTTACGTAAGAATTATTTCTCTCTTGGTT
196 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTT
10258609 CTTGGACGAACATCCAAA
261 CTTGGACGAACATCCAAA
* * * *
10258627 CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATT
1 CTTGTCAAACTCTCACGAGTTCTTTTATAACTT-AGGTTCCTGAAAGAATTCAAGACGATCCATT
* * * * * *
10258691 -CTTTCGAGCAATTTTTCGAATATTCCATGCTCGGGAAATCGCAT-ATTTGGTCTAAA-TAGTTT
65 CCTTT-GAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTC-AAAGTAGTTT
* * * *
10258753 GT-ATTTTTGTAAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCT
128 GTCA-TTTTGAAAACAAGTTTCGG-ACTGTGAATTAAAAACTTAGTTACATGAG-AATTGGTTCT
* * * ** * * * *
10258815 ATCTTTGTTCTTGGACGAACTTTCGAACTTGTCAAAGTCTTATTTATATGAGTACTGTTTCACTC
190 ATCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTC
* *
10258880 TTGGTTCTTGGACGAACTTCCGAA
255 TTGGTTCTTGGACGAACATCCAAA
10258904 CTTGTCAAA
1 CTTGTCAAA
10258913 AACTTATTTA
Statistics
Matches: 243, Mismatches: 37, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
276 2 0.01
277 145 0.60
278 95 0.39
279 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (278 bp):
CTTGTCAAACTCTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGAATTCAAGACGATCCATTC
CTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAGTAGTTTGTC
ATTTTGAAAACAAGTTTCGGACTGTGAATTAAAAACTTAGTTACATGAGAATTGGTTCTATCTTA
GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAACTATTTCACTCTTGGTT
CTTGGACGAACATCCAAA
Found at i:10259227 original size:62 final size:62
Alignment explanation
Indices: 10259129--10259252 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 62
10259119 GTTAATTAAT
10259129 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10259191 AACTTA-TTGACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTT-ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10259253 CTTTTACGAT
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 2 0.03
62 58 0.97
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10259719 original size:62 final size:62
Alignment explanation
Indices: 10259621--10259744 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
10259611 GTTAATTAAT
* * *
10259621 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
* * *
10259683 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
10259745 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGGACAAACATCCAAACTTGTCAAA
Found at i:10260062 original size:62 final size:62
Alignment explanation
Indices: 10259884--10260072 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 62
10259874 TCCTTGAATT
* * * * * * *
10259884 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAGCTTTCAAACTCGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
10259946 AAAAACTTATTTACATGAGTATTGTATCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10260008 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTTGACGAACATCCGATCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10260070 AAA
1 AAA
10260073 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10260539 original size:62 final size:62
Alignment explanation
Indices: 10260454--10260626 Score: 283
Period size: 62 Copynumber: 2.8 Consensus size: 62
10260444 TTAGTTACAA
* * * *
10260454 GAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAACTTATTTACGT
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
10260516 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
* * *
10260578 GACAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10260627 CTTTTACAAT
Statistics
Matches: 104, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACGT
Found at i:10260877 original size:62 final size:62
Alignment explanation
Indices: 10260805--10260964 Score: 232
Period size: 62 Copynumber: 2.6 Consensus size: 62
10260795 GCAATTGGTT
* * * *
10260805 CTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* * * *
10260867 CTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
10260929 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10260965 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
61 3 0.03
62 81 0.93
63 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
Found at i:10260925 original size:338 final size:336
Alignment explanation
Indices: 10260224--10261178 Score: 1158
Period size: 338 Copynumber: 2.8 Consensus size: 336
10260214 TCTTTCAATT
* * * * *
10260224 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
* * * * * * *
10260288 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATTCATTCCTTT-GAGCA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGCA
* * * * * * * * *
10260352 AATTTCCAAACATTCCACGCT-TGAGAAAT-CACATCATTTGGTCAAAATAGTTAGTCA-TTTTG
130 ATTTTTCGAACATTCCAAGCTCTGGGAATTGCA-A-AATTTGGTCTAAATAGTTTGT-ATTTTTG
* * * * ** * * *
10260414 AAAACAAGTATTGG-ACTGTAAATTAATAACTTAGTTACAAGAGAATTGTTTCTCTCTTAGTTCT
192 TAAACAAGT-TTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTG-GTATCTCTTGGTTCT
* * * *
10260478 TGGATGAACTTCCAAACTTGTCACAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
254 TGGATGAACTT-CAAACTTGTCA-AAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGG
10260543 ACGAACATCCAAACTTGTCA
317 ACGAACATCCAAACTTGTCA
* * *
10260563 AAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
*
10260628 TTTTACAATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
10260693 TTTTTCGAACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAA
131 TTTTTCGAACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAA
*
10260758 CAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGT-TCTCTTGGTTCTTGGAT
196 CAAGTTT-GGTCCTTAAATTAAAAACTTATTTACGTGAG-AATTGGTATCTCTTGGTTCTTGGAT
*
10260821 GAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAA
259 GAAC-TTCAAACTTGTCAAA-ACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAA
* ** *
10260886 CTTCTGAACTTGTTA
322 CATCCAAACTTGTCA
*
10260901 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
*
10260966 TTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
* * * * * *
10261031 TTTTTCGAACATTCCATGCTC-GGGAAATCGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAA
131 TTTTTCGAACATTCCAAGCTCTGGG-AATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAA
* * * *
10261095 ACCAGTTTTGGTCTTTCAATT-AAAACTTATTTACGTGAGAATT-GTATCTCCTTGGTTGTTGGA
195 ACAAG-TTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTATCT-CTTGGTTCTTGGA
* *
10261158 TGAACTTTCGAGCTTGTCAAA
258 TGAAC-TTCAAACTTGTCAAA
10261179 CTTTCACGAG
Statistics
Matches: 539, Mismatches: 62, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
336 2 0.00
337 28 0.05
338 304 0.56
339 41 0.08
340 153 0.28
341 9 0.02
342 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (336 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAA
CAAGTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTATCTCTTGGTTCTTGGATGA
ACTTCAAACTTGTCAAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATC
CAAACTTGTCA
Found at i:10261318 original size:214 final size:215
Alignment explanation
Indices: 10260901--10261380 Score: 622
Period size: 214 Copynumber: 2.2 Consensus size: 215
10260891 GAACTTGTTA
* * *
10260901 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
* * * * *
10260966 TTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
* * * * * * ** * * * *
10261031 TTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAA
* * * *
10261096 CCAGTTTTGGTCTTTCAATT
196 CAAGTTTTGGACTGTAAATT
* * *
10261116 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
* *
10261180 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGCA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATT-CTTTCGAGCA
*
10261244 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTAGTCAAAATAGTTAGTCATTTTGAAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAA
10261309 ACAAGTTTTGGACTGTAAATT
195 ACAAGTTTTGGACTGTAAATT
* * * *
10261330 AATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTT
1 AA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
10261381 CTAAACTTGT
Statistics
Matches: 226, Mismatches: 36, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
214 154 0.68
215 55 0.24
216 17 0.08
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTAGTCATTTTGAAAA
CAAGTTTTGGACTGTAAATT
Found at i:10261341 original size:892 final size:881
Alignment explanation
Indices: 10259621--10261518 Score: 3210
Period size: 892 Copynumber: 2.1 Consensus size: 881
10259611 GTTAATTAAT
* * *
10259621 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
*
10259686 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGGACAAACATCCGAACTTGTCAAACTTTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
* * *
10259751 CGATATCTTTTATAACTTCGATTCCTGAAAGCATTCAAGATGATCCATTTTTTCGAGTAATCCAT
131 CAATATCTTTTATAACTTCGATTCCTGAAAGCATTCAAGATGATCCATTCTTTCGAGTAATCCAA
* *
10259816 GCTCGAGAAATCGAATAATTTTGTCTAAATAGTTTATCTTTTTGTAAACAAGTTTCGGTCCTTGA
196 GCTCGAGAAATCGAATAATTTGGTCTAAATAGTTTATATTTTTGTAAACAAGTTTCGGTCCTTGA
* *
10259881 ATTAAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGATGAGCTTTCAAACTCGTC
261 ATTAAAAACTTATTTACGTGAGAATTGGTTCTC-ATTGGTTCTTGGATGAACATTCAAACTCGTC
* * *
10259946 AAAAACTTATTTACATGAGTATTGTATCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
325 AAAAACTTATTTACATAAGTATTATATCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10260011 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTTGACGAACATCCGATCTTGTCAAACTT
390 AACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
10260076 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
455 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
10260141 TTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTCGTTTTCTAAACC
520 TTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTCGTTTTCTAAACC
10260206 AGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAAC
585 AGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAAC
10260271 TTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGA
650 TTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGA
* * *
10260336 TTCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTTGAGAAATCACATCATTTGGTCAAAATA
715 TCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTAGTCAAAATA
10260401 GTTAGTCATTTTGAAAACAAGTATTGGACTGTAAATTAATAACTTAGTTACAAGAGAATTGTTTC
780 GTTAGTCATTTTGAAAACAAGTATTGGACTGTAAATTAATAACTTAGTTACAAGAGAATTGTTTC
*
10260466 TCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACA
845 TCTCTTAGTTCTTCGATGAACTTCCAAACTTGTCACA
10260503 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
*
10260568 TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
* * *
10260633 CAATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
131 CAATATCTTTTATAACTTCGATTCCTGAAAGCATTCAAGATGATCCATTCTTTCGAG-------T
* * *
10260698 CGAACATTCCAAGCTCTG-GGAATTGCAA-AATTTGGTCTAAATAGTTTGTATTTTTGTAAACAA
189 ---A-A-TCCAAGCTC-GAGAAATCG-AATAATTTGGTCTAAATAGTTTATATTTTTGTAAACAA
10260761 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTC-TTGGTTCTTGGATGAA
247 GTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCATTGGTTCTTGGATGAA
* * *
10260824 CATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTT
311 CATTCAAACTCGTCAAAAACTTATTTACATAAGTATTATATCACTCTTGGTTCTTGGACGAACTT
* * * *
10260889 CTGAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCG
376 CCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCG
10260954 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCAT
441 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCAT
* *
10261019 TCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTTAATATTTTG
506 TCTTTCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTG
* *
10261084 TCTTTTTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTG
571 TCGTTTTCTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTG
10261149 GTTGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
636 GTTGTTGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
*
10261214 AGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATC
701 AGAATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATC
*
10261279 ATTTAGTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTAC
766 ATTTAGTCAAAATAGTTAGTCATTTTGAAAACAAGTATTGGACTGTAAATTAATAACTTAGTTAC
* *
10261344 ATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACA
831 AAGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCCAAACTTGTCACA
**
10261395 AACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
* *
10261460 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
10261519 AACTTACTTA
Statistics
Matches: 954, Mismatches: 47, Indels: 20
0.93 0.05 0.02
Matches are distributed among these distances:
882 177 0.19
889 1 0.00
892 681 0.71
893 2 0.00
894 90 0.09
895 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (881 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
CAATATCTTTTATAACTTCGATTCCTGAAAGCATTCAAGATGATCCATTCTTTCGAGTAATCCAA
GCTCGAGAAATCGAATAATTTGGTCTAAATAGTTTATATTTTTGTAAACAAGTTTCGGTCCTTGA
ATTAAAAACTTATTTACGTGAGAATTGGTTCTCATTGGTTCTTGGATGAACATTCAAACTCGTCA
AAAACTTATTTACATAAGTATTATATCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
ACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTT
TTCGAACAATCCATGCTCGGGAAATCGCATAATTTCGTCTTAATATTTTGTCGTTTTCTAAACCA
GTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACT
TTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGAT
CCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTAGTCAAAATAG
TTAGTCATTTTGAAAACAAGTATTGGACTGTAAATTAATAACTTAGTTACAAGAGAATTGTTTCT
CTCTTAGTTCTTCGATGAACTTCCAAACTTGTCACA
Found at i:10261431 original size:62 final size:62
Alignment explanation
Indices: 10261333--10261580 Score: 302
Period size: 62 Copynumber: 4.0 Consensus size: 62
10261323 GTAAATTAAT
* * * * *
10261333 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
** * * *
10261395 AACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
*
10261457 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCT-AACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAAC-TTCTAAACTTGTCAAA
* * * * * **
10261519 AACTTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
10261581 TTTTTACGAT
Statistics
Matches: 159, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
61 1 0.01
62 157 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCTAAACTTGTCAAA
Found at i:10261553 original size:124 final size:124
Alignment explanation
Indices: 10261333--10261580 Score: 356
Period size: 124 Copynumber: 2.0 Consensus size: 124
10261323 GTAAATTAAT
* *
10261333 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACAAAC
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTCCTAAACTTGTCAAAAAC
* ** *
10261398 TTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
66 TTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10261457 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCT-AACTTGTCAAAA
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGA-TGAAC-TCCTAAACTTGTCAAAA
* *
10261520 ACTTACTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
64 ACTTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10261581 TTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 106 0.96
125 4 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (124 bp):
AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTCGATGAACTCCTAAACTTGTCAAAAAC
TTACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10261736 original size:954 final size:956
Alignment explanation
Indices: 10260441--10262641 Score: 3951
Period size: 956 Copynumber: 2.3 Consensus size: 956
10260431 GTAAATTAAT
* * * * *
10260441 AACTTAGTTACAAGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCACAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAAAC
* *
10260506 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
* * * * *
10260571 TTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACAA
131 TTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
10260636 TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
* *
10260701 ACATTCCAAGCTCTGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
261 ACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
*
10260766 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGG-T-TCTCTTGGTTCTTGGATGAACATTC
326 AGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACATTC
10260829 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
391 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
*
10260894 CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTT
456 CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
10260959 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
521 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
* * ** *
10261024 CGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTTAATATTTTGTCTTT
586 CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTT
10261089 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
651 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
10261154 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
716 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
*
10261219 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTA
781 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTA
10261284 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
846 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
* * * *
10261349 AATTGTTTCTCTCTTAGTTCTTCGATGAACTTCTAAACTTGTCACA
911 AATTGTTTCTCTCTGAGTTCTTCGAAGAACTTCCAAACTTGTCAAA
*** *
10261395 AACTTATTTTTGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAAAC
10261460 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
* *
10261525 CTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAATTTTTACGA
131 TTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
*
10261590 TTTCTTTTATAACTCCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
10261655 ACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
261 ACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
10261720 AGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACATTC
326 AGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACATTC
10261785 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
391 AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
* *
10261850 CTTGTTAAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGATCCGAACTT
456 CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
10261915 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
521 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
10261980 CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTT
586 CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTT
10262045 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
651 TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
10262110 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
716 TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
*
10262175 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTG
781 TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTA
*
10262240 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAG
846 GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
*
10262305 AATTGTTTCTCTCTGAGTTCTTGGAAGAACTTCCAAACTTGTCAAA
911 AATTGTTTCTCTCTGAGTTCTTCGAAGAACTTCCAAACTTGTCAAA
*
10262351 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACATCCAAACTTGTCAAAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAAAC
10262416 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
* *
10262481 TTTACGTAAGAA--TTTTCACTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
131 TTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
* *
10262544 TTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATTCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
** * *
10262609 ATGTTCCATGCTCAGGAAATTGCATAATTTGGT
261 ACATTCCATGCTCAGGGAATTGCAAAATTTGGT
10262642 TCTTGAATTA
Statistics
Matches: 1191, Mismatches: 54, Indels: 4
0.95 0.04 0.00
Matches are distributed among these distances:
954 479 0.40
955 1 0.00
956 711 0.60
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (956 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTA
TTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
ACATTCCATGCTCAGGGAATTGCAAAATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTC
AGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGATGAACATTC
AAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCTGAA
CTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTT
CGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTT
TTGTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
TGGATGAACTTTCGAGCTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAAT
TCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTA
GTCAAAATAGTTAGTCATTTTGAAAACAAGTTTTGGACTGTAAATTAATAACTTAGTTACATGAG
AATTGTTTCTCTCTGAGTTCTTCGAAGAACTTCCAAACTTGTCAAA
Found at i:10261833 original size:62 final size:62
Alignment explanation
Indices: 10261761--10261920 Score: 205
Period size: 62 Copynumber: 2.6 Consensus size: 62
10261751 AATTGGTTCT
* * * *
10261761 CTCTTGGTTCTTGGATGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* ** * *
10261823 CTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTTAAAAACTTATTTATGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* *
10261885 CTCTTGGTTCTTGGACGAAGATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10261921 CTTTTACGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
61 3 0.04
62 79 0.94
63 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
Found at i:10262230 original size:214 final size:214
Alignment explanation
Indices: 10261857--10262350 Score: 580
Period size: 214 Copynumber: 2.3 Consensus size: 214
10261847 GAACTTGTTA
* * * **
10261857 AAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAAC
* * * * *
10261922 TTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAA
* * * * * ** * * * *
10261987 TTTTTCGAACAATCCATGCTCGGGAAATCACATAATTTCATCTTAATATTTTGTCGTTTTGTAAA
130 ATTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAA
* *
10262052 CCAGTTTTGGTCT-TTCAATT
195 CAAGTTTTGGACTGTT-AATT
* * * * *
10262072 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACT
* *
10262137 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGCAA
66 TTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATT-CTTTCGAGCAA
* * **
10262201 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTAGTCATTTTGAAAA
130 ATTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAA
10262266 CAAGTTTTGGACTGTTAATT
195 CAAGTTTTGGACTGTTAATT
* * *
10262286 AATAACTTAGTTACATGAGAATTGTTTCT-CTCTGAGTTCTTGGAAGAACTTCCAAACTTGTCAA
1 AA-AACTTATTTACGTGAGAATTGTTTCTCCT-TG-GTTCTTGGAAGAACTTCCGAACTTGTCAA
10262350 A
63 A
10262351 AACTTATTTA
Statistics
Matches: 233, Mismatches: 41, Indels: 9
0.82 0.14 0.03
Matches are distributed among these distances:
214 151 0.65
215 57 0.24
216 25 0.11
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (214 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCATGAAAGAATTCAAGACGATCCATTCTTTCGAGCAAA
TTTCCAAACAATCCACGCTCGAGAAATCACATAATTTCATCAAAATAGTTAGTCATTTTGAAAAC
AAGTTTTGGACTGTTAATT
Found at i:10262531 original size:60 final size:62
Alignment explanation
Indices: 10262289--10262534 Score: 356
Period size: 62 Copynumber: 4.0 Consensus size: 62
10262279 GTTAATTAAT
* * * *
10262289 AACTTAGTTACATGAGAATTGTTTCTCTC-TGAGTTCTTGGAAGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGATGAACATCCAAACTTGTCAAA
* *
10262351 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTTGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
*
10262413 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCTAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCAAACTTGTCAAA
* * *
10262475 AACTTATTTACGTAAGAA-T-TTTCACTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
10262535 CTTTTACGAT
Statistics
Matches: 171, Mismatches: 10, Indels: 8
0.90 0.05 0.04
Matches are distributed among these distances:
59 1 0.01
60 37 0.22
61 1 0.01
62 129 0.75
63 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
Found at i:10262822 original size:181 final size:179
Alignment explanation
Indices: 10262472--10262822 Score: 436
Period size: 181 Copynumber: 1.9 Consensus size: 179
10262462 CTAACTTGTC
* * * *
10262472 AAAAACTTATTTACGTAAGAATTTTCACTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
1 AAAAACTTATTTACATAAGAATTTTCACTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
* * * * * * *
10262537 TTTACGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATTCATTCTTTCGAGCAAT
66 TTTACGATTTCTTTTATAACTTCGGTTCCTAAAAATATTCAAGATAATGCATTCCTTCGAGAAAT
** * * **
10262602 TTTTCGAATGTTCCATGCTCAGGAAATTGCATAATTTGGTTCTTGAATT
131 TTTTCGAACATTCAACGCTCAGGAAATCCCATAATTTGGTTCTTGAATT
* * *
10262651 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGGACATCCAAACTTGTCAAA
1 AAAAACTTATTTACATAAGAA-T-TTTCACTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10262716 CTTTTAGGATTTCTTTTATAACTTCGTTTCC-AAAAATAATTCAAGATAATGCATTCCTTCTAGA
64 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAAT-ATTCAAGATAATGCATTCCTTCGAGA
*
10262780 AATTTTTCGAACATTCAACGCTC-GGAAAATCCCATCATTTGGT
128 AATTTTTCGAACATTCAACGCTCAGG-AAATCCCATAATTTGGT
10262823 CTAAATAGTT
Statistics
Matches: 144, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
179 19 0.13
180 7 0.05
181 118 0.82
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (179 bp):
AAAAACTTATTTACATAAGAATTTTCACTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACT
TTTACGATTTCTTTTATAACTTCGGTTCCTAAAAATATTCAAGATAATGCATTCCTTCGAGAAAT
TTTTCGAACATTCAACGCTCAGGAAATCCCATAATTTGGTTCTTGAATT
Found at i:10263065 original size:215 final size:215
Alignment explanation
Indices: 10262647--10263146 Score: 564
Period size: 215 Copynumber: 2.3 Consensus size: 215
10262637 TTGGTTCTTG
* * *
10262647 AATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGCTTCTTGGACGGAC-ATCCAAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTAT-CGAACTTG
* * * * * * *
10262711 TCAAACTTTTAGGATTTCTTTTATAACTTCGTTTCCAAAAATAATTCAAGATAATGCATTCCTTC
64 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCATTCCTTC
* * * *
10262776 TAGAAATTTTTCGAACATTCAACGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
129 TAGAAATTTTCCAAACATTCAACGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
*
10262841 TGAAAACAAGTTTTGGTCCTA-A
194 TGAAAACAAGTTTTGG-ACTATA
* * *
10262863 AATTAAAAAGTCATTTACGTGAGAATTGTATCTC-CTTAGTTCTTGGACGAACTATCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTATCGAACTTGT
** * *
10262927 CAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGGATTCAAG-TCGATCCATTCCTT-
65 CAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGAT-AATCCATTCCTTC
* * * *
10262990 TGGGCAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATATTTTGTCA
129 T-AG-AAATTTTCCAAACATTCAACGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCA
* *
10263053 TTTTGTAAACAAGTTTTGGACTATT
191 TTTTGAAAACAAGTTTTGGACTATA
* * * * * *
10263078 AATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATTTTCGAACTTGT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTATCGAACTTGT
10263143 CAAA
65 CAAA
10263147 AACTTATTTA
Statistics
Matches: 238, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
214 7 0.03
215 165 0.69
216 66 0.28
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (215 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTATCGAACTTGTC
AAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCATTCCTTCTA
GAAATTTTCCAAACATTCAACGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
AAAACAAGTTTTGGACTATA
Found at i:10263248 original size:62 final size:62
Alignment explanation
Indices: 10263092--10263253 Score: 229
Period size: 62 Copynumber: 2.6 Consensus size: 62
10263082 AATAACTTAG
* * * * *
10263092 TTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATTTTCGAACTTGTCAAAAACTTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
**
10263154 TTACGAGAGAATTGTTTCTCTCTTGGAACTTGGA-GAAAGTTTCGAACATGTCAAAAAATTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AAGTTTCGAACATGTCAAAAAATTAT
10263216 TTACGTA-AGAATTGTTTCTCTCTTGGTTCTTGGACGAA
1 TTACG-AGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
10263254 CATCCGAACT
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
61 1 0.01
62 85 0.97
63 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (62 bp):
TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
Found at i:10263525 original size:62 final size:62
Alignment explanation
Indices: 10263422--10263610 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 62
10263412 TCCTTGAATT
* * * * *
10263422 AAAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10263484 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACATGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
10263546 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10263608 AAA
1 AAA
10263611 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:10263535 original size:340 final size:340
Alignment explanation
Indices: 10262875--10264165 Score: 1832
Period size: 340 Copynumber: 3.8 Consensus size: 340
10262865 TTAAAAAGTC
* * * *
10262875 ATTTACGTGAGAATTGTATCTC-CTTAGTTCTTGGACGAACTAT-CGAACTTGTCAAACTTTCAC
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTCAAACTTTTAC
* * * * * * *
10262938 GAGTTCTTTTATAACTTAGGTTCCTTAAAGGATTCAAG-TCGATCCATTCCTTT-GGGCAAATTT
65 GATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGAT-GATCCATT-CTTTCGAGCAATTTT
* * * * *
10263001 CCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATATTTTGTCATTTTGTAAACAAG
128 TCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* * * * * * *
10263066 TTTTGG-ACTATTAATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAA
193 TTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
* * * ** *
10263130 TTTTCGAACTTGTCAAAAACTTATTTACGA-GAGAATTGTTTCTCTCTTGGAACTTGGAGAAAGT
257 CTTTCGAACTTGTCAAAAACTTATTTAC-ATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGT
10263194 TTCGAACATGTCAAAAAATT
321 TTCGAACATGTCAAAAAATT
10263214 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
*
10263279 ATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
66 ATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
* *
10263344 AACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTTT
131 AACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
10263409 TGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGATGAACTTT
196 TGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
10263474 CGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGA
261 CGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGA
10263539 ACATGTCAAAAAATT
326 ACATGTCAAAAAATT
10263554 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
*
10263619 ATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTCG
66 ATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
* * * *
10263684 AACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACAAGTTT
131 AACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * *
10263749 CGGTCCTTGAATTAAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
196 TGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
* * * * * *
10263814 CAAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAA
261 CGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGA
* *
10263879 ACTTGTCAAAAACTT
326 ACATGTCAAAAAATT
* *
10263894 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACG
1 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
* * ** *
10263959 ATTT-TTTTATAACTTTGATTCCA--AAATGTATTCAAGATAATCCATTCCATCTAG-ATATTTT
66 ATTTCTTTTATAACTTTGGTT-CATGAAA-GTATTCAAGATGATCCATTCTTTCGAGCA-ATTTT
* * *
10264020 TCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
128 TCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
10264085 TTTTGGTCTTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACGA
193 TTTTGGTC-CTTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGA
10264148 ACTTTCGAACTTGTCAAA
256 ACTTTCGAACTTGTCAAA
10264166 CTTTCACGAG
Statistics
Matches: 866, Mismatches: 75, Indels: 22
0.90 0.08 0.02
Matches are distributed among these distances:
338 4 0.00
339 170 0.20
340 689 0.80
341 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (340 bp):
ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
ATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCG
AACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTT
CGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGA
ACATGTCAAAAAATT
Found at i:10263859 original size:62 final size:62
Alignment explanation
Indices: 10263762--10263950 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 62
10263752 TCCTTGAATT
* * * *
10263762 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10263824 AAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10263886 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10263948 AAA
1 AAA
10263951 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10264286 original size:215 final size:214
Alignment explanation
Indices: 10263886--10264380 Score: 660
Period size: 215 Copynumber: 2.3 Consensus size: 214
10263876 CAAACTTGTC
* * *
10263886 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10263951 CTTTTACGATTTTTTTATAACTTTGATTCCAAAATGTATTCAAGATAATCCATTCCATCTAGATA
65 CTTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATA
* * * *
10264016 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 ATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10264081 CAAGTTTTGGTCTTTTAAATT
195 CAAGTTTCGGTC-CTTAAATT
10264102 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10264166 CTTTCACGAGTTCTTTTATAACTTAGGTT-CATTAAA-GTATTCAAGACGATCCATTACTTTTAG
65 CTTTCACGA-TTCTTTTATAACTTAGATTCCA--AAATGTATTCAAGACAATCCATTACATCTAG
* * *
10264229 CA-AATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCATTTT
127 -ATAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCT-AAATAGTTTGTCATTTT
*
10264291 GTAAACAAGTTTCGGTCCTTGAATT
190 GTAAACAAGTTTCGGTCCTTAAATT
*
10264316 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10264381 AACTTATTTA
Statistics
Matches: 248, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
214 33 0.13
215 137 0.55
216 74 0.30
217 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATAA
TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTCGGTCCTTAAATT
Found at i:10264417 original size:62 final size:62
Alignment explanation
Indices: 10264316--10264442 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10264306 TCCTTGAATT
* * * * *
10264316 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
**
10264378 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
10264440 AAA
1 AAA
10264443 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10264632 original size:278 final size:276
Alignment explanation
Indices: 10263484--10264720 Score: 1114
Period size: 278 Copynumber: 4.5 Consensus size: 276
10263474 CGAACTTGTC
** * * * * * *
10263484 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACATGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10263549 AAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10263614 TTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
131 TTACGATTTCTTTTATAAC-TTGGTTCATGAAAGTATTCAAGATGATCCATTC-TTTGAGCAATT
*
10263679 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10263744 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
* *
10263762 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10263827 AACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTC--AAAC
* * * * * * ** **
10263892 TTATTTACGTGAGAATTGTTTCTCT--CTTGGTTCTTGGATGAA-CATCCGAACTTG-T-CAAAC
129 -T-TTTAC----GATTTCTTT-TATAACTTGGTTCAT-GA--AAGTATTC-AAGATGATCCATTC
* * ** ** ** * ** ** * * *
10263952 TTTTA-CGATTTTTTTATA-ACTTTGAT--TC-CAAAAT-GTATTCAAGATAATC-CATTCCATC
183 TTTGAGCAATTTTTCGA-ACA-TTCCATGCTCGGGAAATCGCA-T-AATTTGGTCTAAAT--ATT
* ** * *
10264010 TAGATATTTTTCG--AAC-A--TTCCATGCTCGAA--
242 TTG-TATTTTT-GTAAACAAGTTTCGGTCCTTGAATT
** * * * * * * ** * * **
10264040 AAATCCCATCATTT-GGTCTA-AA-TAGTT-TGTCATT--TT-GTAAAC-AAGTTTTGGTCTTTT
1 AAA-AAC-TTATTTATGT-GAGAATTGGTTCTCTC-TTGGTTCTTGGACGAACTTTCGAAC--TT
* * * *
10264097 AAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTG
60 --GTCAAAAACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * *
10264161 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCATTAAAGTATTCAAGACGATCCATTACTTT
123 TCAAACTTTTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATT-CTTT
* * * * * * * *
10264226 TAGCAAATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCA-T
186 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCT-AAATATTTTGT-ATT
10264288 TTTGTAAACAAGTTTCGGTCCTTGAATT
249 TTTGTAAACAAGTTTCGGTCCTTGAATT
10264316 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10264381 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10264446 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATT
* * *
10264511 TTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTATTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10264576 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
10264594 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10264659 AACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10264721 AACTTATTTA
Statistics
Matches: 743, Mismatches: 151, Indels: 130
0.73 0.15 0.13
Matches are distributed among these distances:
268 7 0.01
269 12 0.02
270 16 0.02
271 21 0.03
272 12 0.02
273 11 0.01
274 23 0.03
275 12 0.02
276 45 0.06
277 128 0.17
278 332 0.45
279 9 0.01
280 29 0.04
281 8 0.01
282 13 0.02
283 16 0.02
284 23 0.03
285 7 0.01
286 11 0.01
287 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (276 bp):
AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACAAG
TTTCGGTCCTTGAATT
Found at i:10264691 original size:62 final size:61
Alignment explanation
Indices: 10264594--10264782 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 61
10264584 TCCTTGAATT
* *
10264594 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * *
10264656 AAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10264718 AAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10264780 AAA
1 AAA
10264783 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 3 0.03
62 107 0.96
63 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10264936 original size:340 final size:338
Alignment explanation
Indices: 10264316--10264995 Score: 1008
Period size: 340 Copynumber: 2.0 Consensus size: 338
10264306 TCCTTGAATT
** *
10264316 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10264381 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * * *
10264446 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTTCGATTCA-GAAAGTATTCAAGATAATCCATTCCTTCGAGAAATT
* * * * *
10264511 TTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTATTTTTGTAAACA
195 TTTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACA
* * *
10264576 AGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACG
260 AGTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTCGGTTCTTGGACG
10264640 AACTTTCGAACTTGTC
323 AACTTTCGAACTTGTC
* * *
10264656 AAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAA
1 AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
*
10264720 AAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACT
* *
10264785 TTTACGATTTCTTTTATAACTTTGATTCCA-AAATGTATTCAAGATAATCCATTCCTTCTAGAAA
130 TTTACGATTTCTTTTATAACTTCGATT-CAGAAA-GTATTCAAGATAATCCATTCCTTCGAGAAA
* *
10264849 TTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAGTTTGGCA-TTTTGTAA
193 TTTTTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTT-GCATTTTTGTAA
* * * *
10264913 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTGTTGGAT
257 ACAAGTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTCTTGGAC
10264978 GAACTTTCGAACTTGTC
322 GAACTTTCGAACTTGTC
10264995 A
1 A
10264996 CACTTTCACG
Statistics
Matches: 306, Mismatches: 29, Indels: 11
0.88 0.08 0.03
Matches are distributed among these distances:
339 37 0.12
340 265 0.87
341 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (338 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCGCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGATTCAGAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTT
TTCGAACATTCAATGCTTGGAAAATCCCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACAA
GTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTCGGTTCTTGGACGAAC
TTTCGAACTTGTC
Found at i:10265100 original size:215 final size:216
Alignment explanation
Indices: 10264718--10265213 Score: 655
Period size: 215 Copynumber: 2.3 Consensus size: 216
10264708 TGAACTTGTC
* * *
10264718 AAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10264783 CTTTTACGATTTCTTTTATAACTTTGATTCCAAAATGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAATGTATTCAAGATAATCCATTCCTTCTAGAA
* * * * **
10264848 ATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAGTTTGGCATTTTGTAA
131 ATTTTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAA
*
10264913 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * * *
10264934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTCGGTTGTTGGATGAACTTTCGAACTTGTCACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10264998 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-GTATTCAAGACT-ATCCATTCCTT-TGA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCC-AAAATGTATTCAAGA-TAATCCATTCCTTCT-A
* *
10265060 GCAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTT
128 G-AAATTTTCCAAACATTCAATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGGCATTT
10265123 TGTAAACAAGTTTTGGACTGTTAATT
191 TGTAAACAAGTTTTGGACTGTTAATT
* * *
10265149 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10265214 AACTTATTTA
Statistics
Matches: 241, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
214 3 0.01
215 173 0.72
216 65 0.27
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAATGTATTCAAGATAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10265192 original size:555 final size:552
Alignment explanation
Indices: 10264378--10266108 Score: 2443
Period size: 555 Copynumber: 3.1 Consensus size: 552
10264368 CGAACTTGTC
* * * * *
10264378 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10264443 CTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGA-TGATCCATTCTTTCGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACT-ATCCATTCTTT-GAGC
* *** * * *
10264507 AATTTTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-ATTTTTGT
129 AAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCA-TTTTGT
* * *
10264571 AAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTG
193 AAACAAGTTTTGG-CCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* * * * *
10264636 GACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGAC
257 GACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* *
10264701 GAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAA
322 GAACTTC-GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
10264766 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAATGTATTCAAGATA
386 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAA-GTATTCAAGATA
* *
10264831 ATCCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAAT
450 ATCCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGAAAAATCCCATCATTTGGTCTAAAT
*
10264896 AGTTTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
515 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* * * * *
10264934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTCGGTTGTTGGATGAACTTTCGAACTTGTCACA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10264998 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATT-CTTTGAGCA
* *
10265063 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
10265128 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGCCT-TGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * *
10265193 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGA
259 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10265258 ACATTCGAGCTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACA
324 AC-TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-
10265322 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAA
387 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCC-AAAAGTATTCAAGATAA
* * *
10265387 TCCATTCCTTTTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
451 TCCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGAAAAATCCCATCATTTGGTCTAAATA
10265452 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
516 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* *
10265489 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10265553 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATT-CTTTGAGCA
* * *
10265618 AATTTCCAAACATTCCATGCTCGAGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * *
10265683 ATAGGTTTTGTTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTG-GCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10265748 CGAACTTTCAAACTTGTCAAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGA
259 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10265813 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACA
324 ACTT-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
* * * * *
10265878 TCCGAACTTGTCAAACTTTTATGATTTATTTTATAAC-TTCAGTTCCTGAAAGTATTCAAGATGA
388 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGA-TTCC-AAAAGTATTCAAGATAA
** * * ** * ** * *
10265942 TCCATTATTTCGAGAAATTTTTCAAACATTTTATGC-TCAAGAAATCAAATAATTTGATCTAAAT
451 TCCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGAA-AAATCCCATCATTTGGTCTAAAT
* * * * *
10266006 AGTTTGTCGTTTTGTAAATAGGTTTTGGTCCTTGAATT
515 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* * *
10266044 AAAAACTTAATTACTTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATT-GTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10266108 A
65 A
10266109 AACTTATTTA
Statistics
Matches: 1052, Mismatches: 109, Indels: 28
0.88 0.09 0.02
Matches are distributed among these distances:
554 11 0.01
555 962 0.91
556 79 0.08
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (552 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACTATCCATTCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
GAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAGTATTCAAGATAATCCAT
TCCTTCTAGAAATTTTTCGAACATTCAATGCTTGAAAAATCCCATCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:10265250 original size:62 final size:63
Alignment explanation
Indices: 10265152--10265337 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 63
10265142 GTTAATTAAT
* *
10265152 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
* * *
10265214 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATT-CGAGCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
*
10265276 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
10265338 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
61 4 0.04
62 107 0.95
63 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (63 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCCGAACTTGTCAAA
Found at i:10265512 original size:895 final size:885
Alignment explanation
Indices: 10264316--10266787 Score: 2434
Period size: 895 Copynumber: 2.8 Consensus size: 885
10264306 TCCTTGAATT
* *
10264316 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10264381 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10264446 TTACGATTTCTTTTATAACTTCGGTT-CATGAAAGTATTCAAGATGATCCATT-CTTTCGAGCAA
130 TTACGATTTCTTTTATAACTTAGGTTCCA-AAAAGTATTCAAGATGATCCATTCCTTT-GAGAAA
* * * * *
10264509 TTTTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-ATTTTTGTAA
193 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCA-TTTTGTAA
* * *
10264573 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
257 ACAAGTTTTGGT-CTTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10264638 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTGTCGCTTGGTTCTTGGACGA
321 CGAACTTTCGAACTTGTCAAAAACTTATTTACA-GAGTATTGTTTATCACTTGGTTCTTGGA-GA
*
10264703 ACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAACTGTTTCTCTCTTAGTTCTTGGACGAACA
384 A-TTCTGAAC-TGTCAAAAACTTATTTACGTAAGAA-TGTTTCTCTCTTAGTTCTTGGACGAACA
10264768 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAATGTATTCAAGATAAT
446 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATT-CAAAATGTATTCAAGATAAT
* * *
10264833 CCATTCCTTCTAGAAATTTTTCGAACATTCAATGCTTGGAAAATCCCATCATTTGGTTTAAATAG
510 CCATTCCTTCTAG-AATTTTTCGAACATTCAATGCTTGGAAAATCACATAATTTGATTTAAATAG
*
10264898 TTTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCT
574 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT-TCT
* * *
10264963 CCTCGGTTGTTGGATGAACTTTCGAACTTGTCACACTTTCACGAGTTCTTTTATAACTT-AGGTT
638 CCTCGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTCACGAGTTATTTTATAACTTCA-GTT
* * *
10265027 CCTTAAAGTATTCAAGACT-ATCCATTCCTTT-GAGCAAA-TTTCCAAACATTCCATGCTCGAGA
702 CCTGAAAGTATTCAAGA-TGATCCATT-ATTTCGAG-AAATTTTCCAAACATTCCATGCTCAAGA
* * * * *
10265089 AATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-ACTGTTAATTAATA
764 AATCAAATAATTTGATCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTACT-TGAATTAAAA
* *
10265153 ACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
828 ACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10265211 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATTCGAGCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10265276 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAAACT
66 AACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTCAAACT
* * * *
10265340 TTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGAAAT
129 TTTACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATGATCCATTCCTTTGAGAAAT
* *
10265405 TTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
194 TTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* *
10265470 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACCTAAGAATT-GTATCTC-CTTGGTTCTTGGAC
259 AAGTTTTGGTCTTT-AATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGAC
* * * ** *
10265533 GAACTTTCAAACTTGTC--AAAC-T-TTCAC-GAGT-TCT-TTTATAACTTAGGTTCCTTAAAGT
322 GAACTTTCGAACTTGTCAAAAACTTATTTACAGAGTAT-TGTTTATCACTT-GGTT-CTTGGAGA
* * ** * * *** * *
10265591 ATTC-AAGAC-GATCCATTAC-T-TTTA-G-CA-AAT-TTCCAAACATTCCA-TGC-TCGA-GAA
384 ATTCTGA-ACTG-TCAAAAACTTATTTACGTAAGAATGTTTCTCTC-TT--AGTTCTTGGACGAA
* * * * * * ** * *
10265645 -ATCAGATAATTTGATCTAAA-TAGTTTGTCGTTTTGTAAATAGGTTTTGTTCCTTGAATTAAAA
444 CATCCG--AACTTG-TC-AAACT--TTT-ACGATTTCT---T---TTAT-AACTTTG-ATTCAAA
** * **** * * * * * *
10265708 ACT-TAATTACTTGAGAATTGGCT-CTCTCTTG-GTTCTTGGACGAACTTTCAA-ACTTGTCAAA
494 A-TGT-ATT-CAAGATAATCCATTCCT-TCTAGAATT-TT--TCGAACATTCAATGCTTG-GAAA
* * * * * ** *** ** *
10265769 A--AC-TTATTT-ATGTTAGAATTGTTTCTC-TCTTGGT--TCTTG-GACGAACTTCCAAACTTG
551 ATCACATAATTTGAT-TTA-AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTT-TAAA--T-
* * * *
10265826 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCA
609 T-AAAAACTTATTTACGTGAGAATTG-TTCTC-CTCGGTTCTTGGATGAACTTTCGAACTTGTCA
* * *
10265891 AACTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAG
671 AACTTTCACGAGTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAG
* ** * *
10265956 AAATTTTTCAAACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGT
736 AAATTTTCCAAACATTCCATGCTCAAGAAATCAAATAATTTGATCAAAATAGTTTGTCATTTTGT
* * * *
10266021 AAATAGGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTG
801 AAACAAGTTTTGGTACTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* *
10266086 GACGAACTTTCGAACTTGTC
866 GACGAACTTCCAAACTTGTC
* * * *
10266106 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACCTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
**
10266171 AACTTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* * ** * *
10266236 TCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGGATTCAAG-TCGATCCATTCCTTTGGGCAAA
130 TTACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGAT-GATCCATTCCTTTGAG-AAA
* * * *
10266300 -TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATATTTTGTCATTTTGTAAA
193 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * * *
10266364 CAAGTTTTGGACTATTAATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGAC
258 CAAGTTTTGGTCT-TTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * * * *
10266429 GAATTTTCGAACTTGTCAAAAACTTATTTACGAGAGAATTGTTTCTCTCTT-GTAACTTGGAGAA
322 GAACTTTCGAACTTGTCAAAAACTTATTTAC-AGAGTATTGTTTATCACTTGGT-TCTTGGAG-A
* *
10266493 AGTT-TCGAACATGTCAAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
384 A-TTCT-GAAC-TGTCAAAAACTTATTTACGTAAGAA-TGTTTCTCTCTTAGTTCTTGGACGAAC
* * *
10266557 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAA-GTATTCAAGATG
445 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCA--AAATGTATTCAAGATA
* * * * * *
10266621 ATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAAT
508 ATCCATTCCTTCTAG-AATTTTTCGAACATTCAATGCTTGGAAAATCACATAATTTGATTTAAAT
* * * *
10266686 AGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTGAATT-AAAACTTAATTACTTGAGAATTGGTT
572 AGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTT
10266750 C-CCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
636 CTCCTC--GGTTCTTGGATGAACTTTCGAACTTGTCAAA
10266788 AACTTATTTA
Statistics
Matches: 1247, Mismatches: 226, Indels: 208
0.74 0.13 0.12
Matches are distributed among these distances:
878 4 0.00
879 7 0.01
880 11 0.01
881 7 0.01
882 5 0.00
883 4 0.00
884 10 0.01
885 2 0.00
886 6 0.00
887 14 0.01
888 11 0.01
889 8 0.01
890 13 0.01
891 21 0.02
892 29 0.02
893 18 0.01
894 89 0.07
895 774 0.62
896 59 0.05
897 13 0.01
898 29 0.02
899 15 0.01
900 16 0.01
901 10 0.01
902 5 0.00
903 13 0.01
904 5 0.00
905 2 0.00
906 10 0.01
907 4 0.00
908 4 0.00
909 7 0.01
910 11 0.01
911 7 0.01
912 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (885 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATGATCCATTCCTTTGAGAAATTT
TTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCTTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC
TTTCGAACTTGTCAAAAACTTATTTACAGAGTATTGTTTATCACTTGGTTCTTGGAGAATTCTGA
ACTGTCAAAAACTTATTTACGTAAGAATGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTTGATTCAAAATGTATTCAAGATAATCCATTCCTTCT
AGAATTTTTCGAACATTCAATGCTTGGAAAATCACATAATTTGATTTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTCTCCTCGGTTCTTGG
ATGAACTTTCGAACTTGTCAAACTTTCACGAGTTATTTTATAACTTCAGTTCCTGAAAGTATTCA
AGATGATCCATTATTTCGAGAAATTTTCCAAACATTCCATGCTCAAGAAATCAAATAATTTGATC
AAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTACTTGAATTAAAAACTTAATTACGTGAGAAT
TGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10265665 original size:215 final size:216
Alignment explanation
Indices: 10265273--10265768 Score: 665
Period size: 215 Copynumber: 2.3 Consensus size: 216
10265263 CGAGCTTGTC
* * * * *
10265273 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACAATCCGAACTTGTCAA
1 AAAAACTTATTTACCTGAGAATTGTATCTCTCTTGGTTCTTGGACGAAC-TTTCAAACTTGTCAA
* * * * *
10265337 ACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAGA
* * * * *
10265402 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTA
*
10265467 AACAAGTTTTGGTCTTTAAATT
195 AACAAGTTTTGGTCCTTAAATT
*
10265489 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACCTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* ** *
10265553 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAG-A
* * *
10265618 AA-TTTCCAAACATTCCATGCTCGAGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTA
130 AATTTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTA
* * * *
10265682 AATAGGTTTTGTTCCTTGAATT
195 AACAAGTTTTGGTCCTTAAATT
* * **
10265704 AAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACCTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10265769 AACTTATTTA
Statistics
Matches: 244, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
215 178 0.73
216 66 0.27
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACCTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTTTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCCTTAAATT
Found at i:10265801 original size:62 final size:62
Alignment explanation
Indices: 10265704--10265892 Score: 281
Period size: 62 Copynumber: 3.0 Consensus size: 62
10265694 TCCTTGAATT
* ** *
10265704 AAAAACTTAATTACT-TGAGAATTGGCTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTA-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10265766 AAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10265828 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10265890 AAA
1 AAA
10265893 CTTTTATGAT
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 115 0.99
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10266141 original size:62 final size:62
Alignment explanation
Indices: 10266044--10266232 Score: 272
Period size: 62 Copynumber: 3.0 Consensus size: 62
10266034 TCCTTGAATT
* * * *
10266044 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
* *
10266106 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACCTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
* * * *
10266168 AAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTC
1 AAAAACTTATTTACATGA-GAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
10266230 AAA
1 AAA
10266233 CTTTCACGAG
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
61 1 0.01
62 113 0.99
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
Found at i:10266550 original size:62 final size:62
Alignment explanation
Indices: 10266394--10266555 Score: 222
Period size: 62 Copynumber: 2.6 Consensus size: 62
10266384 AATAACTTAG
* * * * *
10266394 TTACGGGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATTTTCGAACTTGTCAAAAACTTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
*
10266456 TTACGAGAGAATTGTTTCTCTCTT-GTAACTTGGA-GAAAGTTTCGAACATGTCAAAAAATTAT
1 TTACGAGAGAATTGTTTCTCTCTTGGT-TCTTGGACG-AAGTTTCGAACATGTCAAAAAATTAT
10266518 TTACGTA-AGAATTGTTTCTCTCTTGGTTCTTGGACGAA
1 TTACG-AGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
10266556 CATCCGAACT
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
61 3 0.03
62 81 0.92
63 4 0.05
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (62 bp):
TTACGAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAGTTTCGAACATGTCAAAAAATTAT
Found at i:10266827 original size:62 final size:62
Alignment explanation
Indices: 10266724--10266911 Score: 241
Period size: 62 Copynumber: 3.0 Consensus size: 62
10266714 TCCTTGAATT
* * * * *
10266724 AAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
1 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * *
10266786 AAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACATGTCA
1 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * *
10266848 AAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
10266910 AA
1 AA
10266912 CTTTTACGAT
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
Found at i:10266891 original size:339 final size:340
Alignment explanation
Indices: 10265489--10267466 Score: 2692
Period size: 340 Copynumber: 5.8 Consensus size: 340
10265479 TCTTTAAATT
* * * * *
10265489 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10265553 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTT-TAGC
66 CTTTTACGATTTCTTTTATAACTTAGGTTCATGAAAGTATTCAAGATGATCCATT-CTTTCGAGC
* * * *
10265617 AAATTTCCAAACATTCCATGCTCGAGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTA
130 AATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTA
* * * *
10265682 AATAGGTTTTGTTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTGG
195 AACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGG
* ** * * *
10265747 ACGAACTTTCAAACTTGTCAAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACA
* * *
10265812 AACTTCCAAACTTGTC
325 AACTTTCGAACATGTC
* *
10265828 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10265893 CTTTTATGATTTATTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATTATTTCGAGA
66 CTTTTACGATTTCTTTTATAACTT-AGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGC
** * * *
10265957 AATTTTTCAAACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAATAGTTTGTCGTTTTGTA
130 AATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTA
* *
10266022 AATAGGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGG
195 AACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGG
10266087 ACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACA
260 ACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACA
*
10266152 AACTTTCGAACCTGTC
325 AACTTTCGAACATGTC
* **
10266168 AAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10266233 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGGATTCAAG-TCGATCCATTCCTTT-GGG
66 CTTTTACGATTTCTTTTATAACTTAGGTTCATGAAAGTATTCAAGAT-GATCCATT-CTTTCGAG
* * * * * *
10266296 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATATTTTGTCATTTTGT
129 CAATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGT
* * * * ** * *
10266361 AAACAAGTTTTGG-ACTATTAATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTA
194 AAACAAGTTTTGGTCCT-TGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTT
* * *
10266425 GGACGAATTTTCGAACTTGTCAAAAACTTATTTACGA-GAGAATTGTTTCTCTCTT-GTAACTTG
258 GGACGAACTTTCGAACTTGTCAAAAACTTATTTAC-ATGAGTATTGTTTCTCTCTTGGT-TCTTG
* *
10266488 GAGAAAGTTTCGAACATGTC
321 GACAAACTTTCGAACATGTC
*
10266508 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10266573 CTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTAGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* *
10266638 ATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
131 ATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
*
10266703 ACAAGTTTTGGTCCTTGAATT-AAAACTTAATTACTTGAGAATTGGTTCCCTCTTGGTTCTTGGA
196 ACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10266767 TGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAA
261 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAA
*
10266832 AGTTTCGAACATGTC
326 ACTTTCGAACATGTC
*
10266847 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10266912 CTTTTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTAGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * * * *
10266977 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAA
131 ATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
* * *
10267042 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTA-TGTTAGAATTGGTTCTCTCTTGGTTCTTGG
196 ACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACT-TGAGAATTGGTTCTCTCTTGGTTCTTGG
* * * *
10267106 ACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACG
260 ACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACA
* * *
10267171 AACTTCCAAACTTGTC
325 AACTTTCGAACATGTC
* *
10267187 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * ** *
10267252 CTTTTACGATTT-TTTTATAACTTTGATTCCA--AAATGTATTCAAGATAATCCATTCCATCTAG
66 CTTTTACGATTTCTTTTATAACTTAGGTT-CATGAAA-GTATTCAAGATGATCCATTCTTTCGAG
* * * * *
10267314 -ATATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG
129 CA-ATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTG
* * * *
10267378 TAAACAAGTTTTGGTCTTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTC
193 TAAACAAGTTTTGGTC-CTTGAATTAAAAACTTAATTACTTGAGAATTGGT-TCTCTCTTGGTTC
10267441 TTGGACGAACTTTCGAACTTGTCAAA
256 TTGGACGAACTTTCGAACTTGTCAAA
10267467 CTTTCACGAG
Statistics
Matches: 1470, Mismatches: 147, Indels: 44
0.89 0.09 0.03
Matches are distributed among these distances:
338 5 0.00
339 498 0.34
340 959 0.65
341 8 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTAGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
ATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAA
ACTTTCGAACATGTC
Found at i:10267043 original size:679 final size:677
Alignment explanation
Indices: 10265489--10267466 Score: 2889
Period size: 679 Copynumber: 2.9 Consensus size: 677
10265479 TCTTTAAATT
* * * * *
10265489 AAAAACTTATTTACCTAAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10265553 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTT-AGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATT-CTTTTGAGC
* * *
10265617 AAATTTCCAAACATTCCATGCTCGAGAAATCAG-ATAATTTGATCTAAATAGTTTGTCGTTTTGT
130 AAATTTCCAAACATTCCATGCTCGAGAAATC-GCATAATTTGGTCTAAATATTTTGTCATTTTGT
* * * * *
10265681 AAATAGGTTTTGTTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGCTCTCTCTTGGTTCTTG
194 AAACAAGTTTTG-GCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* *
10265746 GACGAACTTTCAAACTTGTCAAAAACTTATTTATGTTAGAATTGTTTCTCTCTTGGTTCTTGGAC
258 GACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
10265811 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAA
323 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * *
10265876 CATCCGAACTTGTCAAACTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATG
388 CATCCGAACTTGTCAAACTTTTACGATTT-TTTTATAACTTCGGTTCATGAAAGTATTCAAGATG
* * ** * *
10265941 ATCCATTATTTCGAGAAATTTTTCAAACATTTTATGCTCAAGAAATCAAATAATTTGATCTAAAT
452 ATCCATTCTTTCGAG-AATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAAT
* * *
10266006 AGTTTGTCGTTTTGTAAATAGGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTT
516 AGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTT
10266071 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTC
581 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTC
* *
10266136 TCTTGGTTCTTGGACAAACTTTCGAACCTGTC
646 GCTTGGTTCTTGGACAAACTTTCGAACATGTC
* **
10266168 AAAAACTTATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10266233 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGGATTCAAG-TCGATCCATTCCTTTGGGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGAT-GATCCATTCTTTTGAGC
* * *
10266297 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATATTTTGTCATTTTGTA
130 AAATTTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATATTTTGTCATTTTGTA
* * * * * * *
10266362 AACAAGTTTTGGACTATTAATTAATAACTTAGTTACGGGAGAATTGTTTCTCTCTTGGTTCTAGG
195 AACAAGTTTTGGCCT-TGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGG
* * * *
10266427 ACGAATTTTCGAACTTGTCAAAAACTTATTTACGAGAGAATTGTTTCTCTCTT-GTAACTTGGA-
259 ACGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
* * * * * *
10266490 GAAAGTTTCGAACATGTCAAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
323 G-AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10266555 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGAT
387 ACATCCGAACTTGTCAAACTTTTACGATTT-TTTTATAACTTCGGTTCATGAAAGTATTCAAGAT
*
10266620 GATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAA
451 GATCCATTCTTTCGAG-AATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAA
10266685 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTGAATT-AAAACTTAATTACTTGAGAATTGGT
515 TAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGT
* *
10266749 TCCCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCT
580 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCT
*
10266814 CGCTTGGTTCTTGGACAAAGTTTCGAACATGTC
645 CGCTTGGTTCTTGGACAAACTTTCGAACATGTC
*
10266847 AAAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10266912 CTTTTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTTGAGCA
* * * * *
10266977 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATATTTTGTCATTTTGTAA
* * * *
10267042 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGA
196 ACAAGTTTTGG-CCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
10267107 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGA
260 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10267172 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACA
325 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
* * *
10267237 TCCGAACTTGTCAAACTTTTACGATTTTTTTATAACTTTGATTCCA--AAATGTATTCAAGATAA
390 TCCGAACTTGTCAAACTTTTACGATTTTTTTATAACTTCGGTT-CATGAAA-GTATTCAAGATGA
** * * * * *
10267300 TCCATTCCATCTAGATATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
453 TCCATTCTTTCGAGA-ATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATA
* * * *
10267365 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTTAAATTAAAAACTTATTTACGTGAGAATT-GTA
517 GTTTGTCATTTTGTAAACAAGTTTTGGTC-CTTGAATTAAAAACTTAATTACTTGAGAATTGGT-
10267429 TCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
580 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10267467 CTTTCACGAG
Statistics
Matches: 1159, Mismatches: 123, Indels: 34
0.88 0.09 0.03
Matches are distributed among these distances:
677 4 0.00
678 110 0.09
679 561 0.48
680 484 0.42
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (677 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCTTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATATTTTGTCATTTTGTAA
ACAAGTTTTGGCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTGTCAAACTTTTACGATTTTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCC
ATTCTTTCGAGAATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGATCTAAATAGTTT
GTCATTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTC
TTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTG
GTTCTTGGACAAACTTTCGAACATGTC
Found at i:10267160 original size:62 final size:62
Alignment explanation
Indices: 10267063--10267251 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 62
10267053 TCCTTGAATT
* * * *
10267063 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10267125 AAAAACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10267187 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10267249 AAA
1 AAA
10267252 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10267587 original size:215 final size:214
Alignment explanation
Indices: 10267187--10267681 Score: 660
Period size: 215 Copynumber: 2.3 Consensus size: 214
10267177 CAAACTTGTC
* * *
10267187 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10267252 CTTTTACGATTTTTTTATAACTTTGATTCCAAAATGTATTCAAGATAATCCATTCCATCTAGATA
65 CTTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATA
* * * *
10267317 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 ATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10267382 CAAGTTTTGGTCTTTTAAATT
195 CAAGTTTCGGTC-CTTAAATT
10267403 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10267467 CTTTCACGAGTTCTTTTATAACTTAGGTT-CATTAAA-GTATTCAAGACGATCCATTACTTTTAG
65 CTTTCACGA-TTCTTTTATAACTTAGATTCCA--AAATGTATTCAAGACAATCCATTACATCTAG
* * *
10267530 CA-AATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCATTTT
127 -ATAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCT-AAATAGTTTGTCATTTT
*
10267592 GTAAACAAGTTTCGGTCCTTGAATT
190 GTAAACAAGTTTCGGTCCTTAAATT
*
10267617 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10267682 AACTTATTTA
Statistics
Matches: 248, Mismatches: 23, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
214 33 0.13
215 137 0.55
216 74 0.30
217 4 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTCTTTTATAACTTAGATTCCAAAATGTATTCAAGACAATCCATTACATCTAGATAA
TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTCGGTCCTTAAATT
Found at i:10267718 original size:62 final size:62
Alignment explanation
Indices: 10267617--10267743 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10267607 TCCTTGAATT
* * * * *
10267617 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
**
10267679 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
10267741 AAA
1 AAA
10267744 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10267933 original size:278 final size:276
Alignment explanation
Indices: 10266785--10268021 Score: 1123
Period size: 278 Copynumber: 4.5 Consensus size: 276
10266775 CGAACTTGTC
** * * * * * *
10266785 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACAAAGTTTCGAACATGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10266850 AAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10266915 TTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATT
131 TTACGATTTCTTTTATAAC-TTGGTTCATGAAAGTATTCAAGATGATCCATTC-TTTGAGCAATT
*
10266980 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTCTTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10267045 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
* *
10267063 AAAAACTTATTTATGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10267128 AACTTATTTACGTGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC--AAAC
* * * * * * ** **
10267193 TTATTTACGTGAGAATTGTTTCTCT--CTTGGTTCTTGGATGAA-CATCCGAACTTG-T-CAAAC
129 -T-TTTAC----GATTTCTTT-TATAACTTGGTTCAT-GA--AAGTATTC-AAGATGATCCATTC
* * ** ** ** * ** ** * * *
10267253 TTTTA-CGATTTTTTTATA-ACTTTGAT--TC-CAAAAT-GTATTCAAGATAATC-CATTCCATC
183 TTTGAGCAATTTTTCGA-ACA-TTCCATGCTCGGGAAATCGCA-T-AATTTGGTCTAAAT--ATT
* ** * *
10267311 TAGATATTTTTCG--AAC-A--TTCCATGCTCGAA--
242 TTG-TATTTTT-GTAAACAAGTTTCGGTCCTTGAATT
** * * * * * * ** * * **
10267341 AAATCCCATCATTT-GGTCTA-AA-TAGTT-TGTCATT--TT-GTAAAC-AAGTTTTGGTCTTTT
1 AAA-AAC-TTATTTATGT-GAGAATTGGTTCTCTC-TTGGTTCTTGGACGAACTTTCGAAC--TT
* * * *
10267398 AAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTG
60 --GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTG
* * * *
10267462 TCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCATTAAAGTATTCAAGACGATCCATTACTTT
123 TCAAACTTTTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATT-CTTT
* * * * * * * *
10267527 TAGCAAATTTCCAAAC-TTTCATGCTCGAGAAATCACATCATTTGGT-TGAAATATTTTGTCA-T
186 GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCT-AAATATTTTGT-ATT
10267589 TTTGTAAACAAGTTTCGGTCCTTGAATT
249 TTTGTAAACAAGTTTCGGTCCTTGAATT
10267617 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10267682 AACTTATTTACGTAAGAATTTTTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
10267747 TTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTT-GGTTCATGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATT
* * *
10267812 TTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTATTTTTGTAAACA
194 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACA
10267877 AGTTTCGGTCCTTGAATT
259 AGTTTCGGTCCTTGAATT
* *
10267895 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10267960 CACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10268022 AACTTATTTA
Statistics
Matches: 744, Mismatches: 150, Indels: 130
0.73 0.15 0.13
Matches are distributed among these distances:
268 7 0.01
269 12 0.02
270 16 0.02
271 21 0.03
272 12 0.02
273 11 0.01
274 23 0.03
275 12 0.02
276 45 0.06
277 128 0.17
278 333 0.45
279 9 0.01
280 29 0.04
281 8 0.01
282 13 0.02
283 16 0.02
284 23 0.03
285 7 0.01
286 11 0.01
287 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (276 bp):
AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTGGTTCATGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTTT
TCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATATTTTGTATTTTTGTAAACAAG
TTTCGGTCCTTGAATT
Found at i:10268082 original size:60 final size:62
Alignment explanation
Indices: 10267895--10268142 Score: 421
Period size: 62 Copynumber: 4.0 Consensus size: 62
10267885 TCCTTGAATT
* *
10267895 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10267957 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10268019 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10268079 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10268140 AAA
1 AAA
10268143 CTTTTATGAT
Statistics
Matches: 177, Mismatches: 7, Indels: 5
0.94 0.04 0.03
Matches are distributed among these distances:
60 58 0.33
61 18 0.10
62 101 0.57
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10268114 original size:122 final size:123
Alignment explanation
Indices: 10267895--10268142 Score: 419
Period size: 122 Copynumber: 2.0 Consensus size: 123
10267885 TCCTTGAATT
*
10267895 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10267960 CACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTC
*
10268019 AAAAACTTATTTACGTGAGAATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10268082 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTGTC
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTGTC
10268140 AAA
1 AAA
10268143 CTTTTATGAT
Statistics
Matches: 118, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
121 16 0.14
122 77 0.65
123 3 0.03
124 22 0.19
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (123 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTGTC
Found at i:10268335 original size:62 final size:62
Alignment explanation
Indices: 10268257--10268553 Score: 326
Period size: 62 Copynumber: 4.6 Consensus size: 62
10268247 GGTCTAAATA
* *
10268257 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10268319 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGATGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10268384 CGTGAGAATT
53 CGTGAGAATT
* * * *
10268394 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10268456 GTTTCTCTCTTGATTCTTGGACT-AACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGA-TGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10268518 GTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTT
10268554 CTGAAACTTT
Statistics
Matches: 199, Mismatches: 21, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
61 1 0.01
62 135 0.68
63 3 0.02
65 1 0.01
66 1 0.01
67 1 0.01
70 1 0.01
71 1 0.01
72 1 0.01
74 3 0.02
75 51 0.26
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10268407 original size:75 final size:75
Alignment explanation
Indices: 10268279--10268421 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10268269 GTTCTTGGAT
* *
10268279 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10268344 CTTGTTGTAC
66 CTTGTTGTAC
*
10268354 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10268419 CTT
66 CTT
10268422 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10268806 original size:62 final size:62
Alignment explanation
Indices: 10268740--10268896 Score: 217
Period size: 62 Copynumber: 2.5 Consensus size: 62
10268730 AATTGGTACT
* * *
10268740 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * * *
10268802 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10268864 CTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTC
1 CTCTTGGTTCTTGGACGAACTTTC-GAACTTGTC
10268897 CAACATTTAC
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 1 0.01
62 83 0.99
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10269311 original size:553 final size:554
Alignment explanation
Indices: 10268506--10269668 Score: 1476
Period size: 553 Copynumber: 2.1 Consensus size: 554
10268496 AAATCTTATT
* * * * * *
10268506 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * * * *
10268571 TCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGTCCAATTTTTCGAAC
65 TCTTTTATAACTTAGCTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGACCAAATTTCCAAAC
* * * * * *
10268636 ATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTTTCGG
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGTTTCGG
* * * * * *
10268701 TCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 TACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * *
10268766 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
260 ACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACT
* * *
10268831 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGT
325 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
* * ** * *
10268896 CCAACATTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT
390 CAAACATTTACGATTTCTTTCATAACTTCGGTTCCAAAAA-TATCCAAGATAATCCATTCCTTCG
* * * *
10268961 AGAAATTTTTCGAACATTCCATGCTC-GAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTT
454 ACAAATTTTTCGAACATCCCATGCTCAGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTT
* *
10269025 GTAAACAAGTTTTGG-CCTTTAATTAAAAACTTACA
519 GTAAACAAGTTTCGGTCCTTGAATTAAAAACTTACA
* * * *
10269060 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * *
10269124 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAAC
65 TCTTTTATAACTTAGCTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGACCAAATTTCCAAAC
* * *
10269189 ATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGTTTTGG
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGTTTCGG
* * * *
10269254 -ACTGTTAAAT-AATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
195 TACT-TGAAATGAA-AACTTAGTTACCTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTTC
* * * * *
10269316 CAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAA
257 CAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAA
*
10269381 ACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
322 ACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * * ** * * *
10269446 TCTGAAACTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAATATCCAGGATGATCCATTCTTT
387 TCTCAAACATTTACGATTTCTTTCATAACTTCGGTTCCAAAAATATCCAAGATAATCCATTCCTT
* * * *
10269511 CGACCAATTTTTCGAACATCCCATGCTCAGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTT
452 CGACAAATTTTTCGAACATCCCATGCTCAGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATT
**
10269576 TTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
517 TTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTACA
*
10269614 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10269669 ACTTATTTAC
Statistics
Matches: 515, Mismatches: 85, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
552 44 0.09
553 391 0.76
554 47 0.09
555 33 0.06
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (554 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGCTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGACCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCGTTTTGAAAACAAGTTTCGGT
ACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAA
CTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTT
GTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTC
AAACATTTACGATTTCTTTCATAACTTCGGTTCCAAAAATATCCAAGATAATCCATTCCTTCGAC
AAATTTTTCGAACATCCCATGCTCAGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTCGGTCCTTGAATTAAAAACTTACA
Found at i:10269371 original size:62 final size:61
Alignment explanation
Indices: 10269274--10269446 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10269264 AATAACTTAG
10269274 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10269336 TTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10269398 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10269447 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10269684 original size:339 final size:340
Alignment explanation
Indices: 10269049--10269790 Score: 951
Period size: 339 Copynumber: 2.2 Consensus size: 340
10269039 GCCTTTAATT
** * * * * * **
10269049 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * *
10269113 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGACCA
* * *
10269178 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCGTTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCGTTTTGAAA
* * * *
10269243 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* *
10269308 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10269373 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10269388 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10269453 CTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAA-TATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10269516 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCGTTTTGA
* * * *
10269580 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* *
10269643 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
10269708 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10269727 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10269790 C
66 C
10269791 ACTTATTTAC
Statistics
Matches: 346, Mismatches: 52, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
337 30 0.09
338 7 0.02
339 249 0.72
340 60 0.17
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCGTTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10269795 original size:60 final size:62
Alignment explanation
Indices: 10269603--10269972 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10269593 TCCTTGAATT
*
10269603 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10269665 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10269727 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10269787 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10269849 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10269909 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10269970 AAA
1 AAA
10269973 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10269822 original size:122 final size:122
Alignment explanation
Indices: 10269603--10269972 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10269593 TCCTTGAATT
*
10269603 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10269667 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10269727 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10269792 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10269849 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10269914 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10269970 AAA
1 AAA
10269973 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10270165 original size:62 final size:62
Alignment explanation
Indices: 10270088--10270383 Score: 340
Period size: 62 Copynumber: 4.6 Consensus size: 62
10270078 TCTAAATAGT
* * *
10270088 TTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
* * *
10270150 TTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTAC
1 TTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTAC
10270215 GTGAGAATTG
53 GTGAGAATTG
* * *
10270225 TTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
* * * *
10270287 TTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTG
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
* *
10270349 TTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10270384 CTGAAACTTT
Statistics
Matches: 199, Mismatches: 22, Indels: 26
0.81 0.09 0.11
Matches are distributed among these distances:
62 136 0.68
63 3 0.02
65 1 0.01
66 1 0.01
67 1 0.01
70 1 0.01
71 1 0.01
72 1 0.01
74 3 0.02
75 51 0.26
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG
Found at i:10270237 original size:75 final size:75
Alignment explanation
Indices: 10270109--10270251 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10270099 GTTCTTGGAT
* *
10270109 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10270174 CTTGTTGTAC
66 CTTGTTGTAC
*
10270184 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10270249 CTT
66 CTT
10270252 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10270708 original size:62 final size:61
Alignment explanation
Indices: 10270568--10270728 Score: 232
Period size: 62 Copynumber: 2.6 Consensus size: 61
10270558 GCAATTGGTA
* * * *
10270568 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTTTTACATAAGAACTGTTT
* * * *
10270629 CACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTT-TTTACATAAGAACTGTTT
*
10270691 CTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10270729 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 39 0.44
62 50 0.56
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.38
Consensus pattern (61 bp):
CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTTTTACATAAGAACTGTTT
Found at i:10270835 original size:339 final size:340
Alignment explanation
Indices: 10270201--10270944 Score: 1016
Period size: 339 Copynumber: 2.2 Consensus size: 340
10270191 CAAACTTGTC
* * * * *
10270201 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10270266 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* *
10270331 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10270396 CGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * * *
10270461 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10270526 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10270541 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10270605 AGACTT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 ACACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAAA
*
10270669 T-TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 TCTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTT
* * * *
10270733 TACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTCAAGTTAATCCAATCCTTCTAG-AAATT
194 TACGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAATT
* * *
10270797 TTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
258 TTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
10270862 AGTTTTGGCCTTTAAATT
323 AGTTTCGGCCTTTAAATT
*
10270880 AAAAACTTATTTACGTGAGAATT-GTA-TCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10270943 AC
65 AC
10270945 TTTCACGAGT
Statistics
Matches: 353, Mismatches: 45, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
337 3 0.01
338 38 0.11
339 240 0.68
340 72 0.20
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10270960 original size:215 final size:215
Alignment explanation
Indices: 10270664--10271158 Score: 672
Period size: 215 Copynumber: 2.3 Consensus size: 215
10270654 CGAACTTGTC
* * *
10270664 AAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * ** **
10270729 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTCAAGTTAATCCAATCCTTCT-AGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTT-TGAGA
* * * * * *
10270793 AATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
*
10270858 AACAAGTTTTGGCCT-TTAAATT
195 AA-AAGTTTTGGACTGTT-AATT
* * *
10270880 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10270944 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTTGAGAA
*
10271009 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10271074 ATAGTTTTGGACTGTTAATT
196 AAAGTTTTGGACTGTTAATT
* * * *
10271094 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10271159 AACTTATTTA
Statistics
Matches: 243, Mismatches: 33, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
214 42 0.17
215 174 0.72
216 27 0.11
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTTGAGAA
AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
AAAGTTTTGGACTGTTAATT
Found at i:10271066 original size:21 final size:19
Alignment explanation
Indices: 10271042--10271080 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
10271032 AGAAATCACA
10271042 TCATTTGGTCAAAATAGTTTG
1 TCATTTGGT--AAATAGTTTG
*
10271063 TCATTTTGTAAATAGTTT
1 TCATTTGGTAAATAGTTT
10271081 TGGACTGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (19 bp):
TCATTTGGTAAATAGTTTG
Found at i:10271194 original size:61 final size:62
Alignment explanation
Indices: 10271097--10271335 Score: 403
Period size: 61 Copynumber: 3.9 Consensus size: 62
10271087 GTTAATTAAT
* *
10271097 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10271159 AACTTATTTACGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10271220 AACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10271280 AACGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10271336 CTGAAACTTT
Statistics
Matches: 169, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
60 24 0.14
61 123 0.73
62 22 0.13
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10271588 original size:62 final size:62
Alignment explanation
Indices: 10271522--10271681 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
10271512 AATTGGTACT
* * * *
10271522 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10271584 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10271646 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10271682 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10271800 original size:340 final size:336
Alignment explanation
Indices: 10271156--10271895 Score: 1054
Period size: 340 Copynumber: 2.2 Consensus size: 336
10271146 CAAACTTGTC
* * * * *
10271156 AAAAACTTATTTACGTGAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
* * *
10271221 ACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAACGTA
66 ACTTATTTACATGAGAACTGTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAACGTA
* *
10271286 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
* * * *
10271351 TTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
* * * *
10271416 ACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
*
10271481 GGTCCTTGAATT
326 GG-CCTTAAATT
10271493 AAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10271558 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAT
65 AACTTATTTACATGAGAACTGTTT-ACTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AAAAC
* * *
10271623 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * *
10271688 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCATTCCTTCGAGAAATTTT
* *
10271752 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10271817 TTTTGGCCTTAAATT
322 TTTCGGCCTTAAATT
** * * *
10271832 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10271895 A
64 A
10271896 CTTTCACGAG
Statistics
Matches: 359, Mismatches: 38, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
337 19 0.05
338 97 0.27
339 63 0.18
340 180 0.50
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (336 bp):
AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTAAATT
Found at i:10272030 original size:214 final size:216
Alignment explanation
Indices: 10271628--10272111 Score: 613
Period size: 214 Copynumber: 2.2 Consensus size: 216
10271618 AAAATTTATT
* * * *
10271628 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* ** * ** * *
10271693 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAAC
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
* *
10271758 ATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
131 ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
10271823 -C-CTTAAATTAAAAACTTACA
196 ACTCTTAAA-TAAAAACTTACA
* * * * *
10271843 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
** *
10271907 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
*
10271970 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
* * **
10272033 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACTCTTAAATAAAAACTTACA
* *
10272058 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10272112 AACATATTTA
Statistics
Matches: 228, Mismatches: 34, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
213 5 0.02
214 143 0.63
215 46 0.20
216 34 0.15
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACTCTTAAATAAAAACTTACA
Found at i:10272154 original size:62 final size:61
Alignment explanation
Indices: 10272057--10272229 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10272047 AATAACTTAG
10272057 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10272119 TTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10272181 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10272230 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10272201 original size:953 final size:955
Alignment explanation
Indices: 10270182--10272229 Score: 3701
Period size: 952 Copynumber: 2.1 Consensus size: 955
10270172 AACTTGTTGT
*
10270182 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
10270247 AACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
10270312 ATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
131 ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
*
10270377 CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATCC
196 CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAATATCCAAGATGATCC
* * *
10270442 ATTCTTTTGGCCAATTTTTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTT
261 ATTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
*
10270507 TGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCT
326 TGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
10270572 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTTG
391 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTTG
10270637 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
456 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
10270702 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATT
521 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATT
*
10270767 ATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATT
586 ATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATT
**
10270832 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTG
651 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGTG
*
10270897 AGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
716 AGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTTTA
10270962 TAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCAT
781 TAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCAT
* *
10271027 GCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAGTTTTGGACTGTTAA
846 GCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAAAAGTTTTGGACTGTTAA
*
10271092 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
911 ATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
10271137 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA-AATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10271201 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
10271265 TTCCAAACTTGTCAAAA-CGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
131 ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
*
10271329 CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCC
196 CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAATATCCAAGATGATCC
* * *
10271394 ATTCTTTCGAG-CAATTTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGT
261 ATTCTTTCG-GCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGT
*
10271458 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTC
325 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTC
10271523 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCT
390 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTT-TTTACATGAGTACTGTTTCACTCT
10271588 TGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGG
454 TGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGG
10271653 TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA
519 TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA
* * * *
10271718 TTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATCA
584 TTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCA
10271783 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCC-TTAAATTAAAAACTTACATACG
649 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACG
*
10271847 TGAGAATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTT
714 TGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTT
*
10271912 TATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCC
779 TATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCC
*
10271977 ATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTTGGACTGT
844 ATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAA-AAGTTTTGGACTGT
10272042 TAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
908 TAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * *
10272090 ACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10272155 AACTTCCAAACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
10272220 ATCCGAACTT
131 ATCCAAACTT
10272230 CTGAAACTTT
Statistics
Matches: 1049, Mismatches: 39, Indels: 10
0.96 0.04 0.01
Matches are distributed among these distances:
952 462 0.44
953 388 0.37
954 133 0.13
955 66 0.06
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (955 bp):
ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAATATCCAAGATGATCC
ATTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTTG
GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATT
ATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATT
TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGTG
AGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTTTA
TAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCAT
GCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAAAAGTTTTGGACTGTTAA
ATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
Found at i:10272364 original size:554 final size:555
Alignment explanation
Indices: 10271288--10272452 Score: 1536
Period size: 554 Copynumber: 2.1 Consensus size: 555
10271278 AAAACGTATT
* * * * * *
10271288 TACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * *
10271353 TCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGAAC
65 TCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCTTTCGAGCAAATTTCCAAAC
* * ** * * *
10271418 ATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGG
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTCGG
* * * * * *
10271483 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 TACTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * * *
10271548 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
260 ACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACT
* *
10271613 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
325 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
** * *
10271678 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT
390 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCG
* * * *
10271743 AGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTT
455 ACAAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTT
*
10271808 GTAAACAAGTTTTGG-CCTTAAATTAAAAACTTACA
520 GTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
* * * *
10271843 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * *
10271907 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCAAA
65 TCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATT-CTTTCGAGCAAATTTCCAAA
* * *
10271971 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTTG
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTCG
* * * *
10272036 G-ACTGTTAAATAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTTC
194 GTACT-TGAAATAAAAACTTAGTTACGTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTTC
* * * *
10272099 CAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAA
257 CAAACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAA
*
10272164 ACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
322 ACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * * * * *
10272229 TCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAA-TATCCAGGATGATCCATTCT
387 TCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATCCAAGATAATCCATTCC
* *
10272293 TTCGACCAATTTTTCGAACATCCCATGCTCAGG-AAATTGCATAATTTCGTCTAAATAGTTTGTC
451 TTCGACAAATTTTTCGAACATCCCATGCTC-GGAAAATTCCATAATTTCGTCTAAATAGTTTGTC
* * **
10272357 TTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
515 ATTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
*
10272398 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10272453 ACTTATTTAC
Statistics
Matches: 523, Mismatches: 77, Indels: 19
0.84 0.12 0.03
Matches are distributed among these distances:
553 2 0.00
554 432 0.83
555 56 0.11
556 33 0.06
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCTTTCGAGCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTCGGT
ACTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAA
CTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACTT
GTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTC
AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCGA
CAAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
Found at i:10272482 original size:340 final size:340
Alignment explanation
Indices: 10271832--10272574 Score: 960
Period size: 340 Copynumber: 2.2 Consensus size: 340
10271822 GCCTTAAATT
** * * * * * **
10271832 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * *
10271896 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10271961 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
* * * *
10272026 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
*
10272091 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
10272156 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10272171 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10272236 CTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10272300 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGA
* * * *
10272364 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* * *
10272427 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGG
10272492 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10272511 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10272574 C
66 C
10272575 ACTTATTTAC
Statistics
Matches: 347, Mismatches: 52, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 284 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10272579 original size:60 final size:62
Alignment explanation
Indices: 10272387--10272756 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10272377 TCCTTGAATT
*
10272387 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10272449 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10272511 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10272571 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10272633 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10272693 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10272754 AAA
1 AAA
10272757 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10272606 original size:122 final size:122
Alignment explanation
Indices: 10272387--10272756 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10272377 TCCTTGAATT
*
10272387 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10272451 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10272511 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10272576 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10272633 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10272698 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10272754 AAA
1 AAA
10272757 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10272953 original size:62 final size:62
Alignment explanation
Indices: 10272871--10273167 Score: 333
Period size: 62 Copynumber: 4.6 Consensus size: 62
10272861 GGTCTAAATA
* * *
10272871 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10272933 GTTTCTTTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10272998 CGTGAGAATT
53 CGTGAGAATT
* * *
10273008 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10273070 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10273132 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10273168 CTGAAACTTT
Statistics
Matches: 199, Mismatches: 23, Indels: 26
0.80 0.09 0.10
Matches are distributed among these distances:
62 136 0.68
63 3 0.02
65 1 0.01
66 1 0.01
67 1 0.01
70 1 0.01
71 1 0.01
72 1 0.01
74 3 0.02
75 51 0.26
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10273021 original size:75 final size:75
Alignment explanation
Indices: 10272893--10273035 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10272883 GTTCTTGGAT
* *
10272893 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTTTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10272958 CTTGTTGTAC
66 CTTGTTGTAC
*
10272968 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10273033 CTT
66 CTT
10273036 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10273420 original size:62 final size:62
Alignment explanation
Indices: 10273354--10273513 Score: 223
Period size: 62 Copynumber: 2.6 Consensus size: 62
10273344 AATTGGTACT
* * *
10273354 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * * *
10273416 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10273478 CTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAA
10273514 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 1 0.01
62 86 0.99
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10273620 original size:340 final size:340
Alignment explanation
Indices: 10272985--10273729 Score: 982
Period size: 340 Copynumber: 2.2 Consensus size: 340
10272975 CAAACTTGTC
* * * *
10272985 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10273050 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* *
10273115 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* ** * * * *
10273180 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATTCTTCTAGCAAATTTTT
* * *
10273245 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10273310 TTCGGTCCTTGAATT
326 TTCGGCCCTTAAATT
* * *
10273325 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10273389 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 ACACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAAA
* *
10273454 T-TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTT
129 TCTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTT
* ** *
10273518 TACGATTTCTTTTATAACTTCGATTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAG-AAATT
194 TACGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATT-CTTCTAGCAAATT
* *
10273582 TTTCGAACATTCCATGCTCG-GAAAATTC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
258 TTTCGAACATCCCATGCTCGAG-AAA-TCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10273645 CAAGTTTTGGCCCTTAAATT
321 CAAGTTTCGGCCCTTAAATT
** * * *
10273665 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTACTAT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10273728 AC
65 AC
10273730 TTTCACGAGT
Statistics
Matches: 350, Mismatches: 48, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
338 2 0.01
339 37 0.11
340 298 0.85
341 13 0.04
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATTCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCCTTAAATT
Found at i:10273851 original size:215 final size:216
Alignment explanation
Indices: 10273460--10273944 Score: 597
Period size: 215 Copynumber: 2.2 Consensus size: 216
10273450 AAAATTTATT
* * * *
10273460 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCAAACTTTTACGAT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTCACGAG
* ** * ** * *
10273524 TTCTTTTATAACTTCGATTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAA
65 TTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAA
* *
10273589 CATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
130 CATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTG
10273654 G-CCCTTAAATTAAAAACTTACA
195 GACCCTTAAA-TAAAAACTTACA
* * * *
10273676 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGT
* ** *
10273740 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGATTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
10273803 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
** * **
10273866 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACCCTTAAATAAAAACTTACA
* * *
10273891 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10273945 AACATATTTA
Statistics
Matches: 228, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 5 0.02
215 167 0.73
216 56 0.25
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGATTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACCCTTAAATAAAAACTTACA
Found at i:10273921 original size:555 final size:555
Alignment explanation
Indices: 10273120--10274285 Score: 1511
Period size: 555 Copynumber: 2.1 Consensus size: 555
10273110 AAATCTTATT
* * * * *
10273120 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * * *
10273185 TCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTTCGAAC
65 TCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGGCCAAATTTCCAAAC
* * * * * *
10273250 ATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTTTCGG
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCGG
* * * * * *
10273315 TCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 TACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * *
10273380 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
260 ACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACT
* * *
10273445 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGT
325 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
* ** *
10273510 CAAACTTTTACGATTTCTTTTATAACTTCGATTCC-AAAAATTATTGAAGTTAATCCATTCCTTC
390 CAAACTTTTACGATTTCTTTCATAACTTCGATTCCTAAAAA-TATCCAAGATAATCCATTCCTTC
* * * * *
10273574 TAGAAATTTTTCGAACATTCCATGCTC-GGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATT
454 GACAAATTTTTCGAACATCCCATGCTCAGG-AAATTCCATAATTTCGTCTAAATAGTTTGTCATT
*
10273638 TTGTAAACAAGTTTTGGCCCTTAAATTAAAAACTTACA
518 TTGTAAACAAGTTTCGGCCCTTAAATTAAAAACTTACA
* * * *
10273676 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* *
10273740 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAG-CAAATTTCCAAA
65 TCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTG-GCCAAATTTCCAAA
* * *
10273804 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTG
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCG
* * * *
10273869 G-ACTGTTAAAT-AATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTT
194 GTACT-TGAAATGAA-AACTTAGTTACCTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTT
* * * * *
10273931 CCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCA
256 CCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCA
*
10273996 AACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
321 AACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * * * *
10274061 TTCTGAAACTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATTCT
386 TTCTCAAACTTTTACGATTTCTTTCATAACTTCGATTCCTAAAAATATCCAAGATAATCCATTCC
* * *
10274126 TTCGACCAATTTTTCGAACATCCCATGCTCAGGAAATTGCATAATTTCGTCTAAATAGTTTGTCT
451 TTCGACAAATTTTTCGAACATCCCATGCTCAGGAAATTCCATAATTTCGTCTAAATAGTTTGTCA
* * **
10274191 TTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
516 TTTTGTAAACAAGTTTCGGCCCTTAAATTAAAAACTTACA
*
10274231 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10274286 ACTTATTTAC
Statistics
Matches: 521, Mismatches: 79, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
554 5 0.01
555 459 0.88
556 57 0.11
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGGCCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCGGT
ACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAA
CTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTT
GTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTC
AAACTTTTACGATTTCTTTCATAACTTCGATTCCTAAAAATATCCAAGATAATCCATTCCTTCGA
CAAATTTTTCGAACATCCCATGCTCAGGAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTCGGCCCTTAAATTAAAAACTTACA
Found at i:10273987 original size:62 final size:61
Alignment explanation
Indices: 10273890--10274062 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10273880 AATAACTTAG
10273890 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10273952 TTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10274014 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10274063 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10274315 original size:340 final size:340
Alignment explanation
Indices: 10273665--10274407 Score: 951
Period size: 340 Copynumber: 2.2 Consensus size: 340
10273655 CCCTTAAATT
** * * * * * **
10273665 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * *
10273729 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10273794 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
* * * *
10273859 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* *
10273924 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10273989 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10274004 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10274069 CTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10274133 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGA
* * * *
10274197 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* *
10274260 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
10274325 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10274344 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10274407 C
66 C
10274408 ACTTATTTAC
Statistics
Matches: 346, Mismatches: 53, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 283 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10274412 original size:60 final size:62
Alignment explanation
Indices: 10274220--10274589 Score: 626
Period size: 62 Copynumber: 6.0 Consensus size: 62
10274210 TCCTTGAATT
*
10274220 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10274282 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10274344 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10274404 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10274466 AAAAACTTATTTATGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10274526 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10274587 AAA
1 AAA
10274590 CTTTTATGAT
Statistics
Matches: 293, Mismatches: 10, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
60 115 0.39
61 20 0.07
62 157 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10274439 original size:122 final size:122
Alignment explanation
Indices: 10274220--10274589 Score: 645
Period size: 122 Copynumber: 3.0 Consensus size: 122
10274210 TCCTTGAATT
*
10274220 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10274284 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10274344 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10274409 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10274466 AAAAACTTATTTATGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10274531 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10274587 AAA
1 AAA
10274590 CTTTTATGAT
Statistics
Matches: 239, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 198 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10274782 original size:62 final size:62
Alignment explanation
Indices: 10274704--10275000 Score: 342
Period size: 62 Copynumber: 4.6 Consensus size: 62
10274694 GGTCTAAATA
* * *
10274704 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10274766 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10274831 CGTGAGAATT
53 CGTGAGAATT
* * *
10274841 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10274903 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10274965 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10275001 CTGAAACTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
62 137 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10274854 original size:75 final size:75
Alignment explanation
Indices: 10274726--10274868 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10274716 GTTCTTGGAT
* *
10274726 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10274791 CTTGTTGTAC
66 CTTGTTGTAC
*
10274801 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10274866 CTT
66 CTT
10274869 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10275253 original size:62 final size:62
Alignment explanation
Indices: 10275187--10275346 Score: 205
Period size: 62 Copynumber: 2.6 Consensus size: 62
10275177 AATTGGTACT
* * * * *
10275187 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGT-TTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-AATGTATTTACATAAGAACTATTTCA
* * * *
10275249 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
* *
10275311 CTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10275347 CTTTTACGAT
Statistics
Matches: 86, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 3 0.03
62 83 0.97
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
Found at i:10275453 original size:340 final size:340
Alignment explanation
Indices: 10274818--10275558 Score: 958
Period size: 340 Copynumber: 2.2 Consensus size: 340
10274808 CAAACTTGTC
* * * * *
10274818 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10274883 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * * *
10274948 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10275013 CGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10275078 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10275143 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10275158 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10275222 AGACTGT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
65 ACA-TGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAA
*
10275286 AT-TTATTTACGTAAGAATTATTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACTT
128 ATCTTATTTACGTAAGAATTATTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTCTCAAACTT
* * *
10275350 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAAT
193 TTACGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAAT
* * * * *
10275414 TTTTCGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATA
257 TTTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10275478 CAAGTTTTGGCCTTTAAATT
321 CAAGTTTCGGCCTTTAAATT
* *
10275498 AAAAACTTATTTACGTGAGAATT-GTA-TCACCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10275559 CAACTTTCAC
Statistics
Matches: 346, Mismatches: 47, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 37 0.11
340 292 0.84
341 15 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10275702 original size:215 final size:216
Alignment explanation
Indices: 10275282--10275777 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 216
10275272 CGAACTTGTC
* * * *
10275282 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10275347 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* * * * * * *
10275412 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10275477 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * * *
10275498 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10275562 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
*
10275626 AAATTTCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTG
130 AAATTTCCAAACATTCCATGCTCGGA-AAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10275689 TAAATAGGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * *
10275713 AATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
10275778 AACTTATTTA
Statistics
Matches: 234, Mismatches: 41, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 172 0.74
216 59 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10275887 original size:122 final size:124
Alignment explanation
Indices: 10275716--10275955 Score: 376
Period size: 122 Copynumber: 2.0 Consensus size: 124
10275706 GTTAATTAAT
*
10275716 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10275781 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10275840 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10275903 GTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
10275956 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 85 0.80
123 2 0.02
124 19 0.18
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10275896 original size:60 final size:62
Alignment explanation
Indices: 10275716--10275955 Score: 376
Period size: 62 Copynumber: 3.9 Consensus size: 62
10275706 GTTAATTAAT
* * *
10275716 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10275778 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10275840 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10275900 GACGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10275956 CTGAAACTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
60 54 0.33
61 4 0.02
62 106 0.65
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10276063 original size:955 final size:957
Alignment explanation
Indices: 10274799--10276850 Score: 3549
Period size: 955 Copynumber: 2.1 Consensus size: 957
10274789 AACTTGTTGT
*
10274799 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10274864 AACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACT-AA
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAA
* *
10274928 CATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
130 CATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
* *
10274993 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
* * * *
10275058 CATTCTTTTGGCCAATTTTTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGT
260 CACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGT
* * *
10275123 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTC
325 TTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTC
10275188 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGT-TTTACATGAGTACTGTTTCACTC
390 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACT-TATTTACATGAGTACTGTTTCACTC
10275252 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTA
454 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTA
10275317 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
519 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
*
10275382 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTC
584 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
* * **
10275447 ATTTGGTCTAAATAGTTTTTCATTTTGTATACAAGTTTTGGCCTTTAAATTAAAAACTTATTTAC
649 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
* *
10275512 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCCAACTTTCACGAGTTCTT
714 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
10275577 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
779 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
* * * * *
10275642 CATGCTCGAGACATCACATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAGGTTTTGGACTG
844 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
* *
10275707 TTAATTAATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGG
909 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
*
10275756 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10275821 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10275884 TTCCAAACTTGTCAAAGA-CGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
131 ATCCAAACTTGTCAAA-ATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
10275948 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
* * *
10276013 CACTCTTTCGAG-CAATTTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAG
260 CACTCTTTCG-GCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAG
* *
10276077 TTTGTCTTTTCGTATACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACT
324 TTTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACT
10276142 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
389 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
* *
10276207 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTG
454 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTA
10276272 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
519 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * *
10276337 ATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATC
584 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
10276402 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
649 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
**
10276467 GTGAGAATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
714 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
* *
10276532 TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTC
779 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
*
10276597 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTTGGACTG
844 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
10276662 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
909 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * *
10276711 ACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10276776 AACTTCCAAACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10276841 ATCCGAACTT
131 ATCCAAACTT
10276851 CTGAAACTTT
Statistics
Matches: 1033, Mismatches: 56, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
954 2 0.00
955 896 0.87
956 6 0.01
957 129 0.12
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (957 bp):
ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCC
ACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTT
GGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTAGT
TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG
TATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGT
GAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTTT
ATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCA
TGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGTT
AAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
Found at i:10276208 original size:62 final size:62
Alignment explanation
Indices: 10276142--10276301 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
10276132 AATTGGTACT
* * * *
10276142 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10276204 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10276266 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10276302 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10276408 original size:340 final size:337
Alignment explanation
Indices: 10275775--10276516 Score: 990
Period size: 340 Copynumber: 2.2 Consensus size: 337
10275765 CAAACTTGTC
* * * * *
10275775 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10275840 AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGT
65 AACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGT
* *
10275905 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
130 ATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
* * * *
10275970 ATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCGATTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCG
* * * *
10276035 AACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTC-TTTTCGTATACAAGTT
260 AACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
* *
10276099 TCGATCC-TTGAATT
324 TCG-GCCTTTAAATT
10276113 AAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10276178 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAT
65 AACTTATTTACATGAGAACTGTTT--CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10276243 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* ** * * *
10276308 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGATTCCTAAAAA-TATCCAAGATAATCCACTCCTTCGAGAAATTTT
* *
10276372 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10276437 TTTTGGCCTTTAAATT
322 TTTCGGCCTTTAAATT
** * * *
10276453 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10276516 A
64 A
10276517 CTTTCACGAG
Statistics
Matches: 354, Mismatches: 42, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
338 81 0.23
339 41 0.12
340 227 0.64
341 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (337 bp):
AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGATTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTTAAATT
Found at i:10276651 original size:215 final size:216
Alignment explanation
Indices: 10276248--10276732 Score: 622
Period size: 215 Copynumber: 2.2 Consensus size: 216
10276238 AAAATTTATT
* * * *
10276248 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* ** * ** * *
10276313 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAAC
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
* *
10276378 ATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
131 ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
*
10276443 CCT-TTAAATTAAAAACTTACA
196 ACTGTTAAA-TAAAAACTTACA
* * * * *
10276464 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
** *
10276528 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
*
10276591 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
* **
10276654 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACTGTTAAATAAAAACTTACA
* *
10276679 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10276733 AACATATTTA
Statistics
Matches: 229, Mismatches: 34, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
214 5 0.02
215 171 0.75
216 53 0.23
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACTGTTAAATAAAAACTTACA
Found at i:10276775 original size:62 final size:61
Alignment explanation
Indices: 10276678--10276850 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10276668 AATAACTTAG
10276678 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10276740 TTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10276802 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10276851 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10276985 original size:555 final size:554
Alignment explanation
Indices: 10275908--10277073 Score: 1486
Period size: 555 Copynumber: 2.1 Consensus size: 554
10275898 AAGACGTATT
* * * * * *
10275908 TACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * *
10275973 TCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCGAAC
65 TCTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAAC
* * ** * * *
10276038 ATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTATACAAGTTTCGA
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGA
* * * * *
10276103 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 -CCTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * * *
10276168 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
259 ACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACT
* *
10276233 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
324 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
** * *
10276298 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT
389 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCG
* * * *
10276363 AGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTT
454 ACAAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTT
*
10276428 GTAAACAAGTTTTGG-CCTTTAAATTAAAAACTTACA
519 GTAAACAAGTTTCGGTCC-TTAAATTAAAAACTTACA
* * * *
10276464 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * *
10276528 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCAAA
65 TCTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACT-CTTTCGAGCAAATTTCCAAA
* *
10276592 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTT-GAAAACAAGTTTT
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGT-CTTTTCGAAAACAAG-TTT
* * * * *
10276656 GGA-CTGTTAAATAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTT
192 CGACCT-TGAAATAAAAACTTAGTTACGTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTT
* * * *
10276719 CCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCA
255 CCAAACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCA
*
10276784 AACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
320 AACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * *
10276849 TTCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAA-TATCCAGGATGATCCATTC
385 TTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATCCAAGATAATCCATTC
* * *
10276913 TTTCGACCAATTTTTCGAACATCCCATGCTCAGG-AAATTGCATAATTTCGTCTAAATAGTTTGT
449 CTTCGACAAATTTTTCGAACATCCCATGCTC-GGAAAATTCCATAATTTCGTCTAAATAGTTTGT
* * **
10276977 CTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
513 CATTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
*
10277019 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10277074 ACTTATTTAC
Statistics
Matches: 520, Mismatches: 78, Indels: 24
0.84 0.13 0.04
Matches are distributed among these distances:
554 3 0.01
555 446 0.86
556 71 0.14
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (554 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGAC
CTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCA
AACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCGAC
AAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
Found at i:10277103 original size:340 final size:340
Alignment explanation
Indices: 10276453--10277195 Score: 960
Period size: 340 Copynumber: 2.2 Consensus size: 340
10276443 CCTTTAAATT
** * * * * * **
10276453 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * *
10276517 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10276582 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
* * * *
10276647 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
*
10276712 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
10276777 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10276792 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10276857 CTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10276921 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGA
* * * *
10276985 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* * *
10277048 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGG
10277113 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10277132 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10277195 C
66 C
10277196 ACTTATTTAC
Statistics
Matches: 347, Mismatches: 52, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 284 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10277200 original size:60 final size:62
Alignment explanation
Indices: 10277008--10277377 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10276998 TCCTTGAATT
*
10277008 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10277070 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10277132 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10277192 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10277254 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10277314 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10277375 AAA
1 AAA
10277378 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10277227 original size:122 final size:122
Alignment explanation
Indices: 10277008--10277377 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10276998 TCCTTGAATT
*
10277008 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10277072 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10277132 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10277197 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10277254 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10277319 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10277375 AAA
1 AAA
10277378 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10277573 original size:62 final size:62
Alignment explanation
Indices: 10277491--10277787 Score: 333
Period size: 62 Copynumber: 4.6 Consensus size: 62
10277481 GGTCTAAATA
* * *
10277491 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10277553 GTTTCTTTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10277618 CGTGAGAATT
53 CGTGAGAATT
* * *
10277628 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10277690 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10277752 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10277788 CTGAAACTTT
Statistics
Matches: 199, Mismatches: 23, Indels: 26
0.80 0.09 0.10
Matches are distributed among these distances:
62 136 0.68
63 3 0.02
65 1 0.01
66 1 0.01
67 1 0.01
70 1 0.01
71 1 0.01
72 1 0.01
74 3 0.02
75 51 0.26
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10277641 original size:75 final size:75
Alignment explanation
Indices: 10277513--10277655 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10277503 GTTCTTGGAT
* *
10277513 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTTTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10277578 CTTGTTGTAC
66 CTTGTTGTAC
*
10277588 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10277653 CTT
66 CTT
10277656 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10278040 original size:62 final size:62
Alignment explanation
Indices: 10277974--10278133 Score: 223
Period size: 62 Copynumber: 2.6 Consensus size: 62
10277964 AATTGGTACT
* * *
10277974 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * * *
10278036 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10278098 CTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAA
10278134 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 1 0.01
62 86 0.99
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10278111 original size:402 final size:399
Alignment explanation
Indices: 10277116--10278133 Score: 1203
Period size: 402 Copynumber: 2.5 Consensus size: 399
10277106 TTCTTGGACG
* *
10277116 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT-GTTTCTTTTGGTTCTTGGACGAACT
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTG-GAATTGGTCTCTCTTGGTTCTTGGACGAACT
* * * *
10277180 TCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
65 TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCC
* *
10277245 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAA
130 AAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAA
*
10277308 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTG
195 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTC
* * * *
10277373 TCAAACTTTTATGATTTCTTTTATAAATTTGATTCCAAAAGTATTCAAGTTAATCCATTCCTTCT
260 TCAAACTTTTACGATTTCTTTTATAAATTCGATTCCAAAAGTATCCAAGATAATCCATTCCTTCT
* * *
10277438 AGAATTTTTTCGAACATTCCATGCTCGGAAAATCCCGTCATTTGGTCTAAATAGTTTCTCTCTTA
325 AGAATTTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTCTCTCTTA
* * **
10277503 GTTCTTGGATG
390 -TTCGTGAAAC
* * * *
10277514 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTTTGTTGGTTCTTGGACGAAC
1 AACTTCCAAACTTGTCAAAAACTTATTTACGTG-GAATTG-GTCTCTCTTGGTTCTTGGACGAAC
10277579 TTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTA-TCTTGGTT
64 ---TT-T-CG--------AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTC-ACTCTTGGTT
* *
10277643 CTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT
115 CTTGGACGAACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * *
10277708 GGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
180 GGACGAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
* * * *
10277773 CGAACATCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAA
245 CG-ACATCCGAACTTCTCAAACTTTTACGATTTCTTTTATAAATTCGATTCC-AAAAGTATCCAA
* * * * *
10277838 GATGATCCATT-CTTTTGGCCAA-TTTTTCGAACATCCCATTCTC-GAGAAATCGCATAATTTGG
308 GATAATCCATTCCTTCTAG--AATTTTTTCGAACATCCCATGCTCGGA-AAATCCCATAATTTGG
* *
10277900 TCTAAATGGTTTGTCT-TT-TT-GT-AAAC
370 TCTAAATAGTTTCTCTCTTATTCGTGAAAC
* **** ** *
10277926 AAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCTCTTGGTTCTTGGACG
1 AA-CTTCCAAACTTG--TCAAAAACTTATTTACGTGG-AATTGGT-CTCTCTTGGTTCTTGGACG
* * * *
10277991 AACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC
61 AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAAC
* *
10278056 TTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
126 TTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
**
10278121 TGAACTTGTCAAA
191 CAAACTTGTCAAA
10278134 CTTTTACGAT
Statistics
Matches: 529, Mismatches: 62, Indels: 54
0.82 0.10 0.08
Matches are distributed among these distances:
398 38 0.07
400 20 0.04
401 1 0.00
402 122 0.23
403 2 0.00
405 1 0.00
410 2 0.00
411 1 0.00
412 5 0.01
413 102 0.19
414 4 0.01
415 112 0.21
416 52 0.10
417 65 0.12
418 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (399 bp):
AACTTCCAAACTTGTCAAAAACTTATTTACGTGGAATTGGTCTCTCTTGGTTCTTGGACGAACTT
TCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCA
AACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAAC
TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTCT
CAAACTTTTACGATTTCTTTTATAAATTCGATTCCAAAAGTATCCAAGATAATCCATTCCTTCTA
GAATTTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTCTCTCTTAT
TCGTGAAAC
Found at i:10278240 original size:340 final size:340
Alignment explanation
Indices: 10277605--10278349 Score: 984
Period size: 340 Copynumber: 2.2 Consensus size: 340
10277595 CAAACTTGTC
* * * *
10277605 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10277670 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* *
10277735 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * *
10277800 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCTTCTAGCAAATTTTT
* * *
10277865 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10277930 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* * *
10277945 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10278009 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 ACACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAAA
* *
10278074 T-TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTT
129 TCTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTT
* ** *
10278138 TACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAG-AAATT
194 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATT-CTTCTAGCAAATT
* *
10278202 TTTCGAACATTCCATGCTCG-GAAAATTC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
258 TTTCGAACATCCCATGCTCGAG-AAA-TCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10278265 CAAGTTTTGGCCTTTAAATT
321 CAAGTTTCGGCCTTTAAATT
** * * *
10278285 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTACTAT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10278348 AC
65 AC
10278350 TTTCACGAGT
Statistics
Matches: 351, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 39 0.11
340 297 0.85
341 13 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTATCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10278471 original size:215 final size:216
Alignment explanation
Indices: 10278080--10278564 Score: 615
Period size: 215 Copynumber: 2.2 Consensus size: 216
10278070 AAAATTTATT
* * * *
10278080 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCAAACTTTTACGAT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTCACGAG
* ** * ** * *
10278144 TTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAA
65 TTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAA
* *
10278209 CATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
130 CATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTG
*
10278274 GCCT-TTAAATTAAAAACTTACA
195 GACTGTTAAA-TAAAAACTTACA
* * * *
10278296 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGT
** *
10278360 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
10278423 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
* **
10278486 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACTGTTAAATAAAAACTTACA
* * *
10278511 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10278565 AACATATTTA
Statistics
Matches: 230, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 5 0.02
215 170 0.74
216 55 0.24
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACTGTTAAATAAAAACTTACA
Found at i:10278541 original size:555 final size:555
Alignment explanation
Indices: 10277740--10278905 Score: 1513
Period size: 555 Copynumber: 2.1 Consensus size: 555
10277730 AAATCTTATT
* * * * *
10277740 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * * *
10277805 TCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTTCGAAC
65 TCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGGCCAAATTTCCAAAC
* * * * * *
10277870 ATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTTTCGG
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCGG
* * * * * *
10277935 TCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 TACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * *
10278000 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
260 ACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACT
* * *
10278065 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGT
325 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
* ** *
10278130 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTC
390 CAAACTTTTACGATTTCTTTCATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCATTCCTTC
* * * * *
10278194 TAGAAATTTTTCGAACATTCCATGCTC-GGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATT
454 GACAAATTTTTCGAACATCCCATGCTCAGG-AAATTCCATAATTTCGTCTAAATAGTTTGTCATT
*
10278258 TTGTAAACAAGTTTTGG-CCTTTAAATTAAAAACTTACA
518 TTGTAAACAAGTTTCGGTCC-TTAAATTAAAAACTTACA
* * * *
10278296 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* *
10278360 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAG-CAAATTTCCAAA
65 TCTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTG-GCCAAATTTCCAAA
* * *
10278424 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTG
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCG
* * * *
10278489 G-ACTGTTAAAT-AATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTT
194 GTACT-TGAAATGAA-AACTTAGTTACCTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTT
* * * * *
10278551 CCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCA
256 CCAAACTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCA
*
10278616 AACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
321 AACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * * *
10278681 TTCTGAAACTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATTCT
386 TTCTCAAACTTTTACGATTTCTTTCATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCC
* * *
10278746 TTCGACCAATTTTTCGAACATCCCATGCTCAGGAAATTGCATAATTTCGTCTAAATAGTTTGTCT
451 TTCGACAAATTTTTCGAACATCCCATGCTCAGGAAATTCCATAATTTCGTCTAAATAGTTTGTCA
* **
10278811 TTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
516 TTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
*
10278851 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10278906 ACTTATTTAC
Statistics
Matches: 522, Mismatches: 77, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
554 5 0.01
555 458 0.88
556 59 0.11
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (555 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGGTTCCTGAAAGCATCCAAGACGATCCATTCCTTTGGCCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTCGGT
ACTTGAAATGAAAACTTAGTTACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAA
CTTGTCAAAAACATATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTT
GTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTC
AAACTTTTACGATTTCTTTCATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGA
CAAATTTTTCGAACATCCCATGCTCAGGAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
Found at i:10278607 original size:62 final size:61
Alignment explanation
Indices: 10278510--10278682 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10278500 AATAACTTAG
10278510 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10278572 TTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10278634 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10278683 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10278935 original size:340 final size:340
Alignment explanation
Indices: 10278285--10279027 Score: 951
Period size: 340 Copynumber: 2.2 Consensus size: 340
10278275 CCTTTAAATT
** * * * * * **
10278285 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * *
10278349 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10278414 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
* * * *
10278479 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* *
10278544 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGTTTTTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10278609 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10278624 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10278689 CTTTTACTATTTCTTTCATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10278753 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGA
* * * *
10278817 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* *
10278880 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
10278945 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10278964 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10279027 C
66 C
10279028 ACTTATTTAC
Statistics
Matches: 346, Mismatches: 53, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 283 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10279032 original size:60 final size:62
Alignment explanation
Indices: 10278840--10279209 Score: 626
Period size: 62 Copynumber: 6.0 Consensus size: 62
10278830 TCCTTGAATT
*
10278840 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10278902 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10278964 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10279024 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10279086 AAAAACTTATTTATGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10279146 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10279207 AAA
1 AAA
10279210 CTTTTATGAT
Statistics
Matches: 293, Mismatches: 10, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
60 115 0.39
61 20 0.07
62 157 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10279059 original size:122 final size:122
Alignment explanation
Indices: 10278840--10279209 Score: 645
Period size: 122 Copynumber: 3.0 Consensus size: 122
10278830 TCCTTGAATT
*
10278840 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10278904 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10278964 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10279029 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10279086 AAAAACTTATTTATGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10279151 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10279207 AAA
1 AAA
10279210 CTTTTATGAT
Statistics
Matches: 239, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 198 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10279402 original size:62 final size:62
Alignment explanation
Indices: 10279324--10279620 Score: 342
Period size: 62 Copynumber: 4.6 Consensus size: 62
10279314 GGTCTAAATA
* * *
10279324 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10279386 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10279451 CGTGAGAATT
53 CGTGAGAATT
* * *
10279461 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10279523 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10279585 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10279621 CTGAAACTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
62 137 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10279474 original size:75 final size:75
Alignment explanation
Indices: 10279346--10279488 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10279336 GTTCTTGGAT
* *
10279346 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10279411 CTTGTTGTAC
66 CTTGTTGTAC
*
10279421 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10279486 CTT
66 CTT
10279489 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10279960 original size:61 final size:62
Alignment explanation
Indices: 10279805--10279965 Score: 209
Period size: 62 Copynumber: 2.6 Consensus size: 62
10279795 GCAATTGGTA
* * * * *
10279805 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGTTTTACATGAGTACTGTTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAATGTTTTACATAAGAACTATTT
* * * *
10279867 CACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-AATTTATTTACGTAAGAATTATTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAATGT-TTTACATAAGAACTATTT
*
10279929 CTCTCTT-GTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10279966 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
61 32 0.37
62 55 0.63
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAGAATGTTTTACATAAGAACTATTT
Found at i:10280078 original size:339 final size:340
Alignment explanation
Indices: 10279438--10280177 Score: 958
Period size: 339 Copynumber: 2.2 Consensus size: 340
10279428 CAAACTTGTC
* * * * *
10279438 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10279503 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * *
10279568 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10279633 CGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10279698 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10279763 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10279778 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10279842 AGACTGT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
65 ACA-TGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAA
*
10279906 AT-TTATTTACGTAAGAATTATTTCTCTCTT-GTTCTTGGACGAACATCCGAACTTGTCAAACTT
128 ATCTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTT
* * *
10279969 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAAT
193 TTACGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAAT
* * * * *
10280033 TTTTCGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATA
257 TTTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
10280097 CAAGTTTTGGCCTTTAAATT
321 CAAGTTTCGGCCTTTAAATT
* *
10280117 AAAAACTTATTTACGTGAGAATT-GTA-TCACCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10280178 CAACTTTCAC
Statistics
Matches: 346, Mismatches: 46, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
337 2 0.01
338 36 0.10
339 165 0.48
340 136 0.39
341 7 0.02
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CATGTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGCTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10280287 original size:215 final size:215
Alignment explanation
Indices: 10279902--10280396 Score: 595
Period size: 215 Copynumber: 2.3 Consensus size: 215
10279892 CGAACTTGTC
* * * *
10279902 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * * * **
10279967 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAAA
* * * * * * *
10280032 TTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATA
131 ATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
10280097 CAAGTTTTGGCCT-TTAAATT
196 CAAGTTTTGGACTGTT-AATT
* * * * *
10280117 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10280181 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
*
10280245 AAATTTCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTCCAAACATTCCATGCTCGGA-AAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10280308 TAAATAGGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
* * * *
10280332 AATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCGAACTTGTCAAA
10280397 AACTTATTTA
Statistics
Matches: 234, Mismatches: 40, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
214 6 0.03
215 194 0.83
216 34 0.15
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAAA
ATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10280506 original size:122 final size:124
Alignment explanation
Indices: 10280335--10280574 Score: 376
Period size: 122 Copynumber: 2.0 Consensus size: 124
10280325 GTTAATTAAT
*
10280335 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10280400 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10280459 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10280522 GTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
10280575 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 85 0.80
123 2 0.02
124 19 0.18
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10280515 original size:60 final size:62
Alignment explanation
Indices: 10280335--10280574 Score: 376
Period size: 62 Copynumber: 3.9 Consensus size: 62
10280325 GTTAATTAAT
* * *
10280335 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10280397 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10280459 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10280519 GACGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10280575 CTGAAACTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
60 54 0.33
61 4 0.02
62 106 0.65
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10280682 original size:954 final size:957
Alignment explanation
Indices: 10279419--10281469 Score: 3549
Period size: 955 Copynumber: 2.1 Consensus size: 957
10279409 AACTTGTTGT
*
10279419 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10279484 AACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACT-AA
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAA
* *
10279548 CATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
130 CATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
* *
10279613 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGCTTCCTGAAAGTATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
* * * *
10279678 CATTCTTTTGGCCAATTTTTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGT
260 CACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGT
* * *
10279743 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTC
325 TTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTC
10279808 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGT-TTTACATGAGTACTGTTTCACTC
390 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACT-TATTTACATGAGTACTGTTTCACTC
10279872 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTT-
454 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTG
10279936 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
519 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
*
10280001 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTC
584 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
* * **
10280066 ATTTGGTCTAAATAGTTTTTCATTTTGTATACAAGTTTTGGCCTTTAAATTAAAAACTTATTTAC
649 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
* *
10280131 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCCAACTTTCACGAGTTCTT
714 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
10280196 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
779 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
* * * * *
10280261 CATGCTCGAGACATCACATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAGGTTTTGGACTG
844 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
* *
10280326 TTAATTAATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGG
909 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
*
10280375 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10280440 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10280503 TTCCAAACTTGTCAAAGA-CGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
131 ATCCAAACTTGTCAAA-ATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
10280567 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATC
* * *
10280632 CACTCTTTCGAG-CAATTTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAG
260 CACTCTTTCG-GCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAG
* *
10280696 TTTGTCTTTTCGTATACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACT
324 TTTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACT
10280761 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
389 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
*
10280826 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTG
454 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTG
10280891 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
519 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * *
10280956 ATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATC
584 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
10281021 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
649 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
**
10281086 GTGAGAATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
714 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
* *
10281151 TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTC
779 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
*
10281216 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTTTTGGACTG
844 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
10281281 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
909 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * *
10281330 ACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10281395 AACTTCCAAACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10281460 ATCCGAACTT
131 ATCCAAACTT
10281470 CTGAAACTTT
Statistics
Matches: 1033, Mismatches: 55, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
953 2 0.00
954 381 0.37
955 519 0.50
956 103 0.10
957 28 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (957 bp):
ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCC
ACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTT
GGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGT
TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG
TATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGT
GAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTTT
ATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCA
TGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGTT
AAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
Found at i:10280827 original size:62 final size:62
Alignment explanation
Indices: 10280761--10280920 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
10280751 AATTGGTACT
* * * *
10280761 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10280823 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10280885 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10280921 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Done.