Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 48 of 144
Found at i:10281027 original size:340 final size:337
Alignment explanation
Indices: 10280394--10281135 Score: 990
Period size: 340 Copynumber: 2.2 Consensus size: 337
10280384 CAAACTTGTC
* * * * *
10280394 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10280459 AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGT
65 AACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGT
* *
10280524 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
130 ATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
* * * *
10280589 ATTTCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCGATTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCG
* * * *
10280654 AACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTC-TTTTCGTATACAAGTT
260 AACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
* *
10280718 TCGATCC-TTGAATT
324 TCG-GCCTTTAAATT
10280732 AAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10280797 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAT
65 AACTTATTTACATGAGAACTGTTT--CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10280862 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* ** * * *
10280927 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGATTCCTAAAAA-TATCCAAGATAATCCACTCCTTCGAGAAATTTT
* *
10280991 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10281056 TTTTGGCCTTTAAATT
322 TTTCGGCCTTTAAATT
** * * *
10281072 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10281135 A
64 A
10281136 CTTTCACGAG
Statistics
Matches: 354, Mismatches: 42, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
338 81 0.23
339 41 0.12
340 227 0.64
341 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (337 bp):
AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGATTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTTAAATT
Found at i:10281270 original size:215 final size:216
Alignment explanation
Indices: 10280867--10281351 Score: 622
Period size: 215 Copynumber: 2.2 Consensus size: 216
10280857 AAAATTTATT
* * * *
10280867 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* ** * ** * *
10280932 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAAC
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
* *
10280997 ATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
131 ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
*
10281062 CCT-TTAAATTAAAAACTTACA
196 ACTGTTAAA-TAAAAACTTACA
* * * * *
10281083 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
** *
10281147 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
*
10281210 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
* **
10281273 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACTGTTAAATAAAAACTTACA
* *
10281298 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10281352 AACATATTTA
Statistics
Matches: 229, Mismatches: 34, Indels: 12
0.83 0.12 0.04
Matches are distributed among these distances:
214 5 0.02
215 171 0.75
216 53 0.23
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACTGTTAAATAAAAACTTACA
Found at i:10281394 original size:62 final size:61
Alignment explanation
Indices: 10281297--10281469 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10281287 AATAACTTAG
10281297 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10281359 TTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10281421 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10281470 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10281604 original size:555 final size:554
Alignment explanation
Indices: 10280527--10281692 Score: 1486
Period size: 555 Copynumber: 2.1 Consensus size: 554
10280517 AAGACGTATT
* * * * * *
10280527 TACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * *
10280592 TCTTTTATAACTTCGATTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCGAAC
65 TCTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAAC
* * ** * * *
10280657 ATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTATACAAGTTTCGA
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGA
* * * * *
10280722 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 -CCTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * * *
10280787 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
259 ACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACT
* *
10280852 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
324 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
** * *
10280917 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT
389 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCG
* * * *
10280982 AGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTT
454 ACAAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTT
*
10281047 GTAAACAAGTTTTGG-CCTTTAAATTAAAAACTTACA
519 GTAAACAAGTTTCGGTCC-TTAAATTAAAAACTTACA
* * * *
10281083 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * *
10281147 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCAAA
65 TCTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACT-CTTTCGAGCAAATTTCCAAA
* *
10281211 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTT-GAAAACAAGTTTT
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGT-CTTTTCGAAAACAAG-TTT
* * * * *
10281275 GGA-CTGTTAAATAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTT
192 CGACCT-TGAAATAAAAACTTAGTTACGTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTT
* * * *
10281338 CCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCA
255 CCAAACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCA
*
10281403 AACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
320 AACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * *
10281468 TTCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAA-TATCCAGGATGATCCATTC
385 TTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATCCAAGATAATCCATTC
* * *
10281532 TTTCGACCAATTTTTCGAACATCCCATGCTCAGG-AAATTGCATAATTTCGTCTAAATAGTTTGT
449 CTTCGACAAATTTTTCGAACATCCCATGCTC-GGAAAATTCCATAATTTCGTCTAAATAGTTTGT
* * **
10281596 CTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
513 CATTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
*
10281638 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10281693 ACTTATTTAC
Statistics
Matches: 520, Mismatches: 78, Indels: 24
0.84 0.13 0.04
Matches are distributed among these distances:
554 3 0.01
555 446 0.86
556 71 0.14
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (554 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGATTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGAC
CTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCA
AACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCGAC
AAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
Found at i:10281722 original size:340 final size:340
Alignment explanation
Indices: 10281072--10281814 Score: 960
Period size: 340 Copynumber: 2.2 Consensus size: 340
10281062 CCTTTAAATT
** * * * * * **
10281072 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * *
10281136 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10281201 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCCTTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
* * * *
10281266 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
*
10281331 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
10281396 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10281411 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10281476 CTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10281540 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGA
* * * *
10281604 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* * *
10281667 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGG
10281732 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10281751 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10281814 C
66 C
10281815 ACTTATTTAC
Statistics
Matches: 347, Mismatches: 52, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 284 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCCTTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10281819 original size:60 final size:62
Alignment explanation
Indices: 10281627--10281996 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10281617 TCCTTGAATT
*
10281627 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10281689 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10281751 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10281811 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10281873 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10281933 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10281994 AAA
1 AAA
10281997 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10281846 original size:122 final size:122
Alignment explanation
Indices: 10281627--10281996 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10281617 TCCTTGAATT
*
10281627 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10281691 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10281751 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10281816 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10281873 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10281938 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10281994 AAA
1 AAA
10281997 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10282189 original size:62 final size:62
Alignment explanation
Indices: 10282111--10282407 Score: 342
Period size: 62 Copynumber: 4.6 Consensus size: 62
10282101 GGTCTAAATA
* * *
10282111 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10282173 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10282238 CGTGAGAATT
53 CGTGAGAATT
* * *
10282248 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10282310 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10282372 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10282408 CTGAAACTTT
Statistics
Matches: 200, Mismatches: 22, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
62 137 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10282261 original size:75 final size:75
Alignment explanation
Indices: 10282133--10282275 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10282123 GTTCTTGGAT
* *
10282133 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10282198 CTTGTTGTAC
66 CTTGTTGTAC
*
10282208 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10282273 CTT
66 CTT
10282276 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10282660 original size:62 final size:62
Alignment explanation
Indices: 10282594--10282753 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10282584 AATTGGTACT
* * * * *
10282594 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * * *
10282656 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
*
10282718 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10282754 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10282860 original size:340 final size:340
Alignment explanation
Indices: 10282225--10282965 Score: 992
Period size: 340 Copynumber: 2.2 Consensus size: 340
10282215 CAAACTTGTC
* * * * *
10282225 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
10282290 CATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * *
10282355 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10282420 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10282485 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10282550 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10282565 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10282629 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 ACACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAAA
*
10282694 T-TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 TCTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTT
* *
10282758 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAATT
194 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAATT
* * * * *
10282822 TTTCGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATAC
258 TTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10282886 AAGTTTTGGCCTTTAAATT
322 AAGTTTCGGCCTTTAAATT
* *
10282905 AAAAACTTATTTACGTGAGAATT-GTA-TCACCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10282966 CAACTTTCAC
Statistics
Matches: 349, Mismatches: 45, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 37 0.11
340 297 0.85
341 13 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10283094 original size:215 final size:216
Alignment explanation
Indices: 10282689--10283184 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 216
10282679 CGAACTTGTC
* * * *
10282689 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10282754 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* * * * * * *
10282819 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10282884 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * *
10282905 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10282969 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
*
10283033 AAATTTCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTG
130 AAATTTCCAAACATTCCATGCTCGGA-AAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10283096 TAAATAGGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * * *
10283120 AATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10283185 AACTTATTTA
Statistics
Matches: 235, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 173 0.74
216 59 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10283294 original size:122 final size:124
Alignment explanation
Indices: 10283123--10283362 Score: 376
Period size: 122 Copynumber: 2.0 Consensus size: 124
10283113 GTTAATTAAT
*
10283123 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10283188 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10283247 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10283310 GTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
10283363 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 85 0.80
123 2 0.02
124 19 0.18
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
GTATTTACGTGAAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10283303 original size:60 final size:62
Alignment explanation
Indices: 10283123--10283362 Score: 376
Period size: 62 Copynumber: 3.9 Consensus size: 62
10283113 GTTAATTAAT
* * *
10283123 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10283185 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10283247 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10283307 GACGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10283363 CTGAAACTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
60 54 0.33
61 4 0.02
62 106 0.65
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10283470 original size:955 final size:957
Alignment explanation
Indices: 10282206--10284257 Score: 3592
Period size: 955 Copynumber: 2.1 Consensus size: 957
10282196 AACTTGTTGT
*
10282206 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10282271 AACTTCCAAACTTGTCAAACATTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACT-AA
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAA
* *
10282335 CATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
130 CATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
*
10282400 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
* * * *
10282465 CATTCTTTTGGCCAATTTTTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGT
260 CACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGT
* * *
10282530 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTC
325 TTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTC
10282595 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCT
390 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCT
10282660 TGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGG
455 TGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGG
10282725 TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA
520 TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA
*
10282790 GTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCA
585 GTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCA
* * **
10282855 TTTGGTCTAAATAGTTTTTCATTTTGTATACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACG
650 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACG
* *
10282920 TGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCCAACTTTCACGAGTTCTTT
715 TGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTT
10282985 TATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCC
780 TATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCC
* * * * *
10283050 ATGCTCGAGACATCACATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAGGTTTTGGACTGT
845 ATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGT
* *
10283115 TAATTAATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGG
910 TAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
*
10283163 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
10283228 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10283291 TTCCAAACTTGTCAAAGA-CGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
131 ATCCAAACTTGTCAAA-ATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
10283355 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
* * *
10283420 CACTCTTTCGAG-CAATTTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAG
260 CACTCTTTCG-GCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAG
* *
10283484 TTTGTCTTTTCGTATACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACT
324 TTTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACT
10283549 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
389 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
*
10283614 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTG
454 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTG
10283679 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
519 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * *
10283744 ATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATC
584 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
10283809 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
649 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
**
10283874 GTGAGAATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
714 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTT
* *
10283939 TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTC
779 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
10284004 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
844 CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTG
10284069 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
909 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* * *
10284118 ACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10284183 AACTTCCAAACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10284248 ATCCGAACTT
131 ATCCAAACTT
10284258 CTGAAACTTT
Statistics
Matches: 1037, Mismatches: 53, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
954 1 0.00
955 901 0.87
956 6 0.01
957 129 0.12
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (957 bp):
ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
ATCCAAACTTGTCAAAATCGTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCC
ACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTT
GGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGT
TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG
TATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGT
GAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGTTCTTTT
ATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCA
TGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGTT
AAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
Found at i:10283615 original size:62 final size:62
Alignment explanation
Indices: 10283549--10283708 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
10283539 AATTGGTACT
* * * *
10283549 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10283611 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10283673 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10283709 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10283815 original size:340 final size:337
Alignment explanation
Indices: 10283182--10283923 Score: 999
Period size: 340 Copynumber: 2.2 Consensus size: 337
10283172 CAAACTTGTC
* * * * *
10283182 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10283247 AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGT
65 AACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGT
* *
10283312 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
130 ATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
* * * *
10283377 ATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCG
* * * *
10283442 AACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTC-TTTTCGTATACAAGTT
260 AACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
* *
10283506 TCGATCC-TTGAATT
324 TCG-GCCTTTAAATT
10283520 AAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10283585 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAT
65 AACTTATTTACATGAGAACTGTTT--CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10283650 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * *
10283715 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCACTCCTTCGAGAAATTTT
* *
10283779 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10283844 TTTTGGCCTTTAAATT
322 TTTCGGCCTTTAAATT
** * * *
10283860 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10283923 A
64 A
10283924 CTTTCACGAG
Statistics
Matches: 355, Mismatches: 41, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
338 81 0.23
339 41 0.12
340 228 0.64
341 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (337 bp):
AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTTAAATT
Found at i:10284046 original size:215 final size:216
Alignment explanation
Indices: 10283655--10284139 Score: 631
Period size: 215 Copynumber: 2.2 Consensus size: 216
10283645 AAAATTTATT
* * * *
10283655 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* ** * ** * *
10283720 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAAC
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
* *
10283785 ATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
131 ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
*
10283850 CCT-TTAAATTAAAAACTTACA
196 ACTGTTAAA-TAAAAACTTACA
* * * * *
10283871 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
** *
10283935 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTCCAA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-AAATTTTCCAA
10283998 ACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
129 ACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTT
* **
10284061 TTGGACTGTTAAATAATAACTTAGT
192 TTGGACTGTTAAATAAAAACTTACA
* *
10284086 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10284140 AACATATTTA
Statistics
Matches: 230, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 5 0.02
215 172 0.75
216 53 0.23
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTTTCCAAAC
ATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGG
ACTGTTAAATAAAAACTTACA
Found at i:10284182 original size:62 final size:61
Alignment explanation
Indices: 10284085--10284257 Score: 265
Period size: 62 Copynumber: 2.8 Consensus size: 61
10284075 AATAACTTAG
10284085 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* **
10284147 TTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10284209 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10284258 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
61 1 0.01
62 100 0.98
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10284392 original size:555 final size:554
Alignment explanation
Indices: 10283315--10284480 Score: 1495
Period size: 555 Copynumber: 2.1 Consensus size: 554
10283305 AAGACGTATT
* * * * * *
10283315 TACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGATT
1 TACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * * * *
10283380 TCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCGAAC
65 TCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAAC
* * ** * * *
10283445 ATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTATACAAGTTTCGA
130 ATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGA
* * * * *
10283510 TCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGA
195 -CCTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAA
* * * * *
10283575 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
259 ACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACT
* *
10283640 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
324 TGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCT
** * *
10283705 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT
389 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCG
* * * *
10283770 AGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTT
454 ACAAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTT
*
10283835 GTAAACAAGTTTTGG-CCTTTAAATTAAAAACTTACA
519 GTAAACAAGTTTCGGTCC-TTAAATTAAAAACTTACA
* * * *
10283871 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAACTTTCACGAGT
1 TACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* * * *
10283935 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCAAA
65 TCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCACT-CTTTCGAGCAAATTTCCAAA
* *
10283999 CATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT-GAAAACAAGTTTT
129 CATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTC-TTTTCGAAAACAAG-TTT
* * * * *
10284063 GGA-CTGTTAAATAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTT
192 CGACCT-TGAAATAAAAACTTAGTTACGTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTT
* * * *
10284126 CCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCA
255 CCAAACTTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCA
*
10284191 AACTTGTCAAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
320 AACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * *
10284256 TTCTGAAACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAA-TATCCAGGATGATCCATTC
385 TTCTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAATTATCCAAGATAATCCATTC
* * *
10284320 TTTCGACCAATTTTTCGAACATCCCATGCTCAGG-AAATTGCATAATTTCGTCTAAATAGTTTGT
449 CTTCGACAAATTTTTCGAACATCCCATGCTC-GGAAAATTCCATAATTTCGTCTAAATAGTTTGT
* * **
10284384 CTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATT
513 CATTTTGTAAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
*
10284426 TACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
1 TACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
10284481 ACTTATTTAC
Statistics
Matches: 521, Mismatches: 77, Indels: 24
0.84 0.12 0.04
Matches are distributed among these distances:
554 3 0.01
555 448 0.86
556 70 0.13
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (554 bp):
TACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTT
CTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAACA
TCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTCGAAAACAAGTTTCGAC
CTTGAAATAAAAACTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAAC
TTGTCAAAAACATATTTACATGAGAACTGTTCCACTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCA
AACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATCCAAGATAATCCATTCCTTCGAC
AAATTTTTCGAACATCCCATGCTCGGAAAATTCCATAATTTCGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTCGGTCCTTAAATTAAAAACTTACA
Found at i:10284510 original size:340 final size:340
Alignment explanation
Indices: 10283860--10284602 Score: 960
Period size: 340 Copynumber: 2.2 Consensus size: 340
10283850 CCTTTAAATT
** * * * * * **
10283860 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * *
10283924 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
* * *
10283989 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
131 AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
* * * *
10284054 ACAAGTTTTGGACTGTTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
*
10284119 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGA
261 CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
10284184 ACTTCCAAACTTGTC
326 ACTTCCAAACTTGTC
* * *
10284199 AAAAATTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
* * * * * * *
10284264 CTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATT-CTTTCGACC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTT-GACC
* * * ** * * *
10284328 AATTTTTCGAACATCCCATGCTC-AGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGT
130 AAATTTCCAAACATCCCATGCTCGA-GAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGA
* * * *
10284392 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
194 AAACAAGTTTCGG-ACTGTGAAATAAAAACTTAGTTACGTGAG-AATTGGTTCTCTCTTAGTTCT
* * *
10284455 TGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGG
10284520 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTGTC
* * *
10284539 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
10284602 C
66 C
10284603 ACTTATTTAC
Statistics
Matches: 347, Mismatches: 52, Indels: 11
0.85 0.13 0.03
Matches are distributed among these distances:
338 30 0.09
339 31 0.09
340 284 0.82
341 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAACATCCAAGACGATCCATTCCTTTGACCA
AATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTCGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTCGGACTGTGAAATAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
CGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTC
Found at i:10284607 original size:60 final size:62
Alignment explanation
Indices: 10284415--10284784 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10284405 TCCTTGAATT
*
10284415 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10284477 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10284539 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10284599 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10284661 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10284721 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10284782 AAA
1 AAA
10284785 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10284634 original size:122 final size:122
Alignment explanation
Indices: 10284415--10284784 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10284405 TCCTTGAATT
*
10284415 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10284479 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10284539 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10284604 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10284661 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10284726 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10284782 AAA
1 AAA
10284785 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10284976 original size:62 final size:62
Alignment explanation
Indices: 10284898--10285194 Score: 351
Period size: 62 Copynumber: 4.6 Consensus size: 62
10284888 GGTCTAAATA
* * *
10284898 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10284960 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10285025 CGTGAGAATT
53 CGTGAGAATT
* *
10285035 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10285097 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10285159 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10285195 CTGAAACTTT
Statistics
Matches: 202, Mismatches: 20, Indels: 26
0.81 0.08 0.10
Matches are distributed among these distances:
62 139 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10285048 original size:75 final size:75
Alignment explanation
Indices: 10284920--10285062 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10284910 GTTCTTGGAT
* *
10284920 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10284985 CTTGTTGTAC
66 CTTGTTGTAC
*
10284995 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10285060 CTT
66 CTT
10285063 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10285183 original size:937 final size:936
Alignment explanation
Indices: 10284078--10287041 Score: 3387
Period size: 954 Copynumber: 3.1 Consensus size: 936
10284068 GTTAAATAAT
* *
10284078 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10284143 ATATTTACGTGAGAATTGTTCCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAAT-TT
66 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACTTCCAAACTTGTC-AAAATCTT
* *
10284207 ATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
*
10284272 ATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAGGATGATCCATTCTTTCGACCAATTTTTCG
195 ATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAATTTTTCG
*
10284337 AACATCCCATGCTCAGGAAATTGCATAATTTCGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
260 AACATCCCATGCTC-GGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
* *
10284402 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTC
324 CGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTT
* * * * * * *
10284467 CAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA
389 CGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGA
* * * *
10284532 ACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACT
454 ACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * *
10284595 TGTCAAAC-AC-T-TATT-T-A-C-G-T-GAGAATT-GTT-T-C-T-C-TCTTG-GTTCTTGGAC
519 TGTCAAACTACTTCTATTATAATCGGTTAAAGAATTAGTTATCCATCCTTCTAGAATT-TT--AC
* **
10284644 GAAC-TTCCAAACTTGTCAAAA-ACTT-ATTTACGT-GAGAAT-TGTTTC-TTTTGGT-T-CTTG
581 GAACATTCCAAACTCG-CAAAACACTTCATTT-CGTCGA-AATATGTTTCATTTT-GTATACAAG
* *
10284701 -GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
642 TGACGAACTT-CAAA--T-T-AAAAACTTATTTACGTAAGAATTGTATCAC-CTTGGTTCTTGGA
* * * * *
10284765 CG-ACATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAAATTTGATT-CC-AAAGGTATTCA
701 CGAACATCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAAATTAGATTCCCTAAA-GCATTCA
** ** * * * *
10284827 AGTTAATCCATTCCTTCT-AGAATTTTTTCGAACATTCCATGCTCGGAAAATCCCGTCATTTGGT
765 AGACAATCCATTCCTT-TGAGAAAATTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGT
* ** * **
10284891 CTAAATAGTTTCTC-TCTTAGT-TCTTGG-ATGAACT-TCCAAACTTGTCAAAAACTTATTTACG
829 CAAAATAGTTTCTCAT-TTAGTAAATAGGTATGAACTGT--AAA--T-T-AAAAACTTAGCTACG
* *
10284952 TGAAAATTGTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAA
887 TGAAAATTGTTTCTC-------TCTT--A-G---TTATTGGACGAACTTCCAAACTTGTCAAA
* *
10285015 AACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10285080 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACTTCCAAACTTGTCAAAATCTTA
10285145 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
* * *
10285210 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTTCGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAATTTTTCGA
* * *
10285275 ACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCG-GAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* *
10285340 GGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTC
325 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTC
10285405 GAACTTGTCAAAGACTT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAA
390 GAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAA
*
10285469 CTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
455 CTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
* *
10285534 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTT
520 GTCAAAC---TAC---TTCTATTATAA--TCGGTT----AAAGAATT--AGTT-ATCC-ATCCTT
** ** * * * * *
10285599 CTAGAAATTTTTTGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATT
569 CTAG-AATTTTACGAACATTCCAAACTCGCAAAA-CACTTCATTTCGTCGAAATA-TGTTTCATT
*** ** * * *
10285664 TTGTATACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCACCTTGGTTG
631 TTGTATACAAGTGACGAACTTCAAATTAAAAACTTATTTACGTAAGAATTGTATCACCTTGGTTC
* * * * *
10285729 TTGGACGAACTTTCGAACTTGTCCAACTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCA
696 TTGGACGAACATCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAAATTAGATTCCCTAAAGCA
* * * *
10285794 TTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGGGACATCACATTATTT
761 TTCAAGACAATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGGAAAATCACATCATTT
* * * * * * *
10285859 GGTCAAAATAGTTTGTCATTTTGTAAATAGGTTTTGGACTGTTAATTAATAACTTAGCTACTTGA
826 GGTCAAAATAGTTTCTCATTTAGTAAATAGG-TATGAACTGTAAATTAAAAACTTAGCTACGTGA
*
10285924 GAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAA
890 AAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAA
*
10285971 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10286036 TTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGA-TGAACTTCCAAACTTGTCAAAGA-CG
66 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACT-AACTTCCAAACTTGTCAAA-ATCT
* *
10286097 TATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
129 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
* *
10286162 GATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTC
194 GATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAATTTTTC
* * *
10286227 GAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTATACAAGTT
259 GAACATCCCATGC-TCGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
*
10286292 TCGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTT
323 TCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTT
10286357 TCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCG
388 TCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCG
10286422 AACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
453 AACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* *
10286487 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCC
518 TTGTCAAAC---TAC---TTCTATTATAA--TCGGTT--AAAGA--ATT--AGTT-ATCCA-TCC
* ** * * * *
10286552 TTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTC-CATCATTTGGTCTAAATA-GTTTGT
567 TTCTAG-AATTTTACGAACATTCCAAACTCGCAAAA--CACTTCATTTCGTCGAAATATG-TT-T
* *** ** * ** * **
10286615 CATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGTGAGAATTGTATGTCCTTG
627 CATTTTGTATACAAGTGACGAACTTCAAATTAAAAACTTATTTACGTAAGAATTGTATCACCTTG
* * * * * *
10286680 GTTGTTGGACGAACTTTCGAAC-TGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
692 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAAATTAGATTCCCTAA
* * *
10286744 AGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTC-GAGAAATCACAG
757 AGCATTCAAGACAATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGGA-AAATCACAT
* * * * * * * *
10286808 CATTTGGTCAAAATAGTTTGTCATTGT-GAAAACAAGTTTTGGACTGTTAAA-TAATAACTTAGT
821 CATTTGGTCAAAATAGTTTCTCATT-TAGTAAA-TAGGTATGAACTG-TAAATTAAAAACTTAGC
* *
10286871 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
883 TACGTGAAAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAA
* * * *
10286925 AACTTATTTACGTGAAAAATGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC-AAAAT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10286989 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACTTCCAAACTT
10287042 CTGAAACTTT
Statistics
Matches: 1797, Mismatches: 156, Indels: 130
0.86 0.07 0.06
Matches are distributed among these distances:
936 80 0.04
937 375 0.21
938 32 0.02
942 2 0.00
946 1 0.00
947 3 0.00
948 1 0.00
949 1 0.00
952 1 0.00
953 28 0.02
954 555 0.31
955 335 0.19
956 109 0.06
959 6 0.00
960 1 0.00
962 7 0.00
964 1 0.00
965 1 0.00
967 1 0.00
968 9 0.01
969 51 0.03
970 77 0.04
971 83 0.05
972 15 0.01
973 7 0.00
974 10 0.01
975 5 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (936 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACTTCCAAACTTGTCAAAATCTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGACCAATTTTTCGA
ACATCCCATGCTCGGAAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCG
GTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCG
AACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAAC
TTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
TCAAACTACTTCTATTATAATCGGTTAAAGAATTAGTTATCCATCCTTCTAGAATTTTACGAACA
TTCCAAACTCGCAAAACACTTCATTTCGTCGAAATATGTTTCATTTTGTATACAAGTGACGAACT
TCAAATTAAAAACTTATTTACGTAAGAATTGTATCACCTTGGTTCTTGGACGAACATCCGAACTT
GTCAAACTTTCACGAGTTCTTTTATAAATTAGATTCCCTAAAGCATTCAAGACAATCCATTCCTT
TGAGAAAATTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTCTCATT
TAGTAAATAGGTATGAACTGTAAATTAAAAACTTAGCTACGTGAAAATTGTTTCTCTCTTAGTTA
TTGGACGAACTTCCAAACTTGTCAAA
Found at i:10285519 original size:62 final size:61
Alignment explanation
Indices: 10285379--10285539 Score: 223
Period size: 62 Copynumber: 2.6 Consensus size: 61
10285369 GCAATTGGTA
* * * * *
10285379 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTTTTACATAAGAACTATTT
* * * *
10285440 CACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTT
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTT-TTTACATAAGAACTATTT
*
10285502 CTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10285540 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
61 39 0.44
62 49 0.56
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (61 bp):
CTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTTTTACATAAGAACTATTT
Found at i:10285880 original size:215 final size:216
Alignment explanation
Indices: 10285475--10285970 Score: 586
Period size: 215 Copynumber: 2.3 Consensus size: 216
10285465 CGAACTTGTC
* * * * *
10285475 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10285540 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* *** * * * *
10285605 ATTTTTTGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10285670 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * *
10285691 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
** * *
10285755 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
* *
10285819 AAATTTCCAAACATTCCATGCTCGGGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTGT
130 AAATTTCCAAACATTCCATGCTCGGAAAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
10285883 AAATAGGTTTTGGACTGTTAATT
194 AAACAAGTTTTGGACTGTTAATT
* ** * * *
10285906 AATAACTTAGCTACTTGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
10285971 AACTTATTTA
Statistics
Matches: 233, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
214 1 0.00
215 173 0.74
216 59 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10286080 original size:122 final size:124
Alignment explanation
Indices: 10285921--10286148 Score: 352
Period size: 122 Copynumber: 1.9 Consensus size: 124
10285911 CTTAGCTACT
* *
10285921 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
1 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTCA
* *
10285986 AAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
66 AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACG
* * * *
10286045 TGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGTATTTACGTCA
1 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTCA
* *
10286108 GAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
10286149 CTGAAACTTT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
122 83 0.88
123 2 0.02
124 9 0.10
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTCA
AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACG
Found at i:10286089 original size:60 final size:62
Alignment explanation
Indices: 10285921--10286148 Score: 352
Period size: 62 Copynumber: 3.7 Consensus size: 62
10285911 CTTAGCTACT
* *
10285921 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
*
10285983 TGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * *
10286045 TGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * * *
10286105 TCAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10286149 CTGAAACTTT
Statistics
Matches: 152, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
60 53 0.35
61 4 0.03
62 95 0.62
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
Found at i:10286401 original size:62 final size:62
Alignment explanation
Indices: 10286335--10286494 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
10286325 AATTGGTACT
* * * *
10286335 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10286397 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10286459 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10286495 CTTTTACGAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 89 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10286601 original size:340 final size:337
Alignment explanation
Indices: 10285968--10286708 Score: 999
Period size: 340 Copynumber: 2.2 Consensus size: 337
10285958 CAAACTTGTC
* * * * *
10285968 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10286033 AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGT
65 AACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGT
* *
10286098 ATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
130 ATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
* * * *
10286163 ATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCG
* * * *
10286228 AACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTC-TTTTCGTATACAAGTT
260 AACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
* *
10286292 TCGATCC-TTGAATT
324 TCG-GCCTTTAAATT
10286306 AAAAACTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10286371 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAT
65 AACTTATTTACATGAGAACTGTTT--CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10286436 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * *
10286501 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCACTCCTTCGAGAAATTTT
* *
10286565 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10286630 TTTTGGCCTTTAAATT
322 TTTCGGCCTTTAAATT
** * *
10286646 AAAAACTTACATACGTGAGAATT-GTA-TGTCCTTGGTTGTTGGACGAACTTTCGAAC-TGTCAA
1 AAAAACTTATTTACGTG-GAATTGGTACTCT-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10286708 A
64 A
10286709 CTTTCACGAG
Statistics
Matches: 355, Mismatches: 40, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
338 88 0.25
339 34 0.10
340 228 0.64
341 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (337 bp):
AAAAACTTATTTACGTGGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCACTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTTAAATT
Found at i:10286730 original size:214 final size:216
Alignment explanation
Indices: 10286441--10286924 Score: 613
Period size: 214 Copynumber: 2.2 Consensus size: 216
10286431 AAAATTTATT
* * * *
10286441 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
* ** * ** * *
10286506 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCT-AG-AAATTTTTCGA
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTT-TGAGCAAA-TTTCCAA
* * * *
10286569 ACATTCCATGCTCG-GAAAATTC-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
129 ACATTCCATGCTCGAG-AAA-TCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTT
*
10286632 TTGGCCT-TTAAATTAAAAACTTACA
192 TTGGACTGTTAAA-TAAAAACTTACA
* * * *
10286657 TACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAAC-TGTCAAACTTTCACGAGT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
** *
10286720 TCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAAC
66 TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAAC
10286785 ATTCCATGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGG
131 ATTCCATGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGG
* **
10286850 ACTGTTAAATAATAACTTAGT
196 ACTGTTAAATAAAAACTTACA
* *
10286871 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10286925 AACTTATTTA
Statistics
Matches: 228, Mismatches: 33, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
213 3 0.01
214 148 0.65
215 54 0.24
216 23 0.10
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGT
TCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTTGAGCAAATTTCCAAAC
ATTCCATGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGG
ACTGTTAAATAAAAACTTACA
Found at i:10286950 original size:954 final size:956
Alignment explanation
Indices: 10284993--10287041 Score: 3527
Period size: 954 Copynumber: 2.1 Consensus size: 956
10284983 AACTTGTTGT
* *
10284993 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10285058 AACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACT-AA
66 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAA
* * *
10285122 CATCCAAACTTGTCAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
130 CATCCAAACTTGTCAAAATCGTATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
*
10285187 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
* * * *
10285252 CATTCTTTTGGCCAATTTTTCGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGT
260 CACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGT
* * *
10285317 TTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTACTC
325 TTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTC
10285382 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTT
390 TCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTT
10285447 GGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGT
455 GGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGT
10285512 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG
520 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAG
* *
10285577 TATTCAAGTTAATCCAATCCTTCTAGAAATTTTTTGAACATTCCATGCTCGGAAAATCCCTTCAT
585 TATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCAT
* * **
10285642 TTGGTCTAAATAGTTTTTCATTTTGTATACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGT
650 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGT
*
10285707 GAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCCAACTTTCACGAGTTCTTTT
715 GAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTT
10285772 ATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCA
780 ATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCA
* * ** * * * *
10285837 TGCTCGGGACATCACATTATTTGGTCAAAATAGTTTGTCATTTTGTAAATAGGTTTTGGACTGTT
845 TGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGGACTGTT
* *
10285902 AATTAATAACTTAGCTACTTGAGAATTGTTTCTCTCTTAGTTATTGG
910 AAATAATAACTTAGCTACGTGAGAATTGTTTCTCTCTTAGTTATTGG
10285949 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
10286014 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAAC
66 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10286077 TTCCAAACTTGTCAAAGA-CGTATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
131 ATCCAAACTTGTCAAA-ATCGTATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACAT
10286141 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
195 CCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATC
* * *
10286206 CACTCTTTCGAG-CAATTTTTCGAACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAG
260 CACTCTTTCG-GCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAG
* *
10286270 TTTGTCTTTTCGTATACAAGTTTCGATCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTACT
324 TTTGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACT
10286335 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
389 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTT-TTTACATGAGTACTGTTTCACTC
*
10286400 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTG
453 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTG
10286465 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
518 GTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
* * * *
10286530 ATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATTCCATC
583 AGTATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATC
10286595 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
648 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATAC
**
10286660 GTGAGAATTGTATGTCCTTGGTTGTTGGACGAACTTTCGAAC-TGTCAAACTTTCACGAGTTCTT
713 GTGAGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTT
* *
10286724 TTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACATTC
778 TTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTC
10286789 CATGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGGACTG
843 CATGCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGGACTG
* *
10286854 TTAAATAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
908 TTAAATAATAACTTAGCTACGTGAGAATTGTTTCTCTCTTAGTTATTGG
* *
10286903 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGATTCTTGGACG
1 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10286968 AACTTCCAAACTTGTC-AAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
*
10287032 ATCCGAACTT
131 ATCCAAACTT
10287042 CTGAAACTTT
Statistics
Matches: 1032, Mismatches: 55, Indels: 13
0.94 0.05 0.01
Matches are distributed among these distances:
953 23 0.02
954 563 0.55
955 344 0.33
956 102 0.10
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (956 bp):
ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC
ATCCAAACTTGTCAAAATCGTATTTACGTCAGAATTATTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCC
ACTCTTTCGGCCAATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTCGTAAACAAGTTTCGATCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTACTCT
CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTTTTACATGAGTACTGTTTCACTCTTG
GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTT
CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGT
ATTCAAGTTAATCCAATCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATT
TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTACATACGTG
AGAATTGTATCACCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
TAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCAT
GCTCGAGAAATCACAGCATTTGGTCAAAATAGTTTGTCATTGTGAAAACAAGTTTTGGACTGTTA
AATAATAACTTAGCTACGTGAGAATTGTTTCTCTCTTAGTTATTGG
Found at i:10287023 original size:61 final size:62
Alignment explanation
Indices: 10286863--10287041 Score: 279
Period size: 62 Copynumber: 2.9 Consensus size: 62
10286853 GTTAAATAAT
* *
10286863 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10286925 AACTTATTTACGTGAAAAATGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10286986 AATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10287042 CTGAAACTTT
Statistics
Matches: 106, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 52 0.49
62 54 0.51
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10287206 original size:553 final size:554
Alignment explanation
Indices: 10286117--10287263 Score: 1445
Period size: 554 Copynumber: 2.1 Consensus size: 554
10286107 AGAATTATTT
* * * * *
10286117 CTCTCTTGGTTCTTGGACGAACATCCGAACT-TCTGAAACTTTTACGATTTCTTTTATAACTTCG
1 CTCTCTTGGTTCTTGGACGAACTTTCGAACTGTC--AAACTTTCACGAGTTCTTTTATAACTTAG
* * * * * * *
10286181 GTTCCTGAAAATATCCAAGATGATCCACTCTTTCGAGCAATTTTTCGAACATCCCATGCTTGGGA
64 GTTCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAACATCCCATGCTCGAGA
** * * * * * *
10286246 AATTGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTATACAAGTTTCGATCCTTGAATTAAAAA
129 AATCACAGAATTTGGTCAAAATAGTTTGTCTTGTCGAAAACAAGTTTCGA-CCTTGAAATAAAAA
* * * * *
10286311 CTTATTTACGTGGCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTT
193 CTTAGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
** * * *
10286376 ATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATT
258 ATTTACATGAAAAATGTTTCACTCTTGATTCTTGGACGAACTTCCAAACTTGTCAAAAATTTATT
*
10286441 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
323 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGATT
* * * * *
10286506 TCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTTTCGAAC
388 TCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGACAAATTTTTCGAAC
* * *
10286571 ATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
453 ATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGG
*
10286636 CCTTTAAATTAAAAACTTACAT-ACGTGAG-AATT-GTA
518 CCTTTAAATTAAAAACTTA-ATCACCTG-GCAATTGGTA
* *
10286672 -TGTCCTTGGTTGTTGGACGAACTTTCGAACTGTCAAACTTTCACGAGTTCTTTTATAACTTAGG
1 CTCT-CTTGGTTCTTGGACGAACTTTCGAACTGTCAAACTTTCACGAGTTCTTTTATAACTTAGG
* * * * *
10286736 TTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAGCAAATTTCCAAACATTCCATGCTCGAGA
65 TTCCTGAAAACATCCAAGACGATCCACT-CTTTCGAGCAAATTTCCAAACATCCCATGCTCGAGA
* * * *
10286800 AATCACAGCATTTGGTCAAAATAGTTTGTCATTGT-GAAAACAAGTTTTGGA-CTGTTAAATAAT
129 AATCACAGAATTTGGTCAAAATAGTTTGTC-TTGTCGAAAACAAG-TTTCGACCT-TGAAATAAA
* *
10286863 AACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
191 AACTTAGTTACGTG-GCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* *
10286927 CTTATTTACGTGAAAAATGTTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGTC-AAAATTT
255 CTTATTTACATGAAAAATGTTTCACTCTTGATTCTTGGACGAACTTCCAAACTTGTCAAAAATTT
* * *
10286991 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACT
320 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
** * * * * *
10287056 ATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAGGATGATCCATTCTTTCGACCAATTTTTTG
385 ATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGACAAATTTTTCG
* * *
10287121 AACATCCCATGCTCGGGAAA-TCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTT
450 AACATCCCATGCTCGGAAAATTC-CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* * *
10287185 TCGGTCC-TTGAATTGAAAACTTATTCACCTGGCAATTGGTA
514 TCGG-CCTTTAAATTAAAAACTTAATCACCTGGCAATTGGTA
10287226 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 CTCTCTTGGTTCTTGGACGAACTTTCGAAC-TGTCAAA
10287264 GACTTACTGT
Statistics
Matches: 505, Mismatches: 73, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
552 4 0.01
553 204 0.40
554 249 0.49
555 46 0.09
556 2 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (554 bp):
CTCTCTTGGTTCTTGGACGAACTTTCGAACTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGT
TCCTGAAAACATCCAAGACGATCCACTCTTTCGAGCAAATTTCCAAACATCCCATGCTCGAGAAA
TCACAGAATTTGGTCAAAATAGTTTGTCTTGTCGAAAACAAGTTTCGACCTTGAAATAAAAACTT
AGTTACGTGGCAATTGGTACTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
TACATGAAAAATGTTTCACTCTTGATTCTTGGACGAACTTCCAAACTTGTCAAAAATTTATTTAC
GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGATTTCT
TTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGACAAATTTTTCGAACATC
CCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGCCT
TTAAATTAAAAACTTAATCACCTGGCAATTGGTA
Found at i:10287349 original size:60 final size:62
Alignment explanation
Indices: 10287279--10287434 Score: 255
Period size: 60 Copynumber: 2.6 Consensus size: 62
10287269 ACTGTTTCAG
* *
10287279 TCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT-
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC
10287340 T-TTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC
* *
10287401 TCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAA
1 TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10287435 CTTTTATGAT
Statistics
Matches: 89, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
60 57 0.64
61 18 0.20
62 14 0.16
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC
Found at i:10287627 original size:62 final size:62
Alignment explanation
Indices: 10287549--10287845 Score: 351
Period size: 62 Copynumber: 4.6 Consensus size: 62
10287539 GGTCTAAATA
* * *
10287549 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10287611 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10287676 CGTGAGAATT
53 CGTGAGAATT
* *
10287686 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10287748 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10287810 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10287846 CTGAAACTTT
Statistics
Matches: 202, Mismatches: 20, Indels: 26
0.81 0.08 0.10
Matches are distributed among these distances:
62 139 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10287699 original size:75 final size:75
Alignment explanation
Indices: 10287571--10287713 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10287561 GTTCTTGGAT
* *
10287571 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10287636 CTTGTTGTAC
66 CTTGTTGTAC
*
10287646 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10287711 CTT
66 CTT
10287714 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10288098 original size:62 final size:62
Alignment explanation
Indices: 10288032--10288191 Score: 214
Period size: 62 Copynumber: 2.6 Consensus size: 62
10288022 AATTGGTACT
* * * * *
10288032 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTGT-TTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA-AATGTATTTACATAAGAACTATTTCA
* * * *
10288094 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
*
10288156 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10288192 CTTTTACGAT
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 3 0.03
62 84 0.97
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATGTATTTACATAAGAACTATTTCA
Found at i:10288298 original size:340 final size:340
Alignment explanation
Indices: 10287663--10288403 Score: 983
Period size: 340 Copynumber: 2.2 Consensus size: 340
10287653 CAAACTTGTC
* * * * *
10287663 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10287728 CACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * *
10287793 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10287858 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10287923 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10287988 TTCGGTCATTGAATT
326 TTCGGCCATTAAATT
*
10288003 GAAAACTTATTTACGTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10288067 AGACTGT-TTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
65 ACACT-TATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAA
*
10288131 AT-TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
128 ATCTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTT
* *
10288195 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAAT
193 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAAT
* * * * * *
10288259 TTTTTGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATA
257 TTTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* *
10288323 CAAGTTTTGGCCTTTAAATT
321 CAAGTTTCGGCCATTAAATT
* *
10288343 AAAAACTTATTTACGTGAGAATT-GTA-TCACCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10288404 CAACTTTCAC
Statistics
Matches: 349, Mismatches: 45, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 35 0.10
340 298 0.85
341 14 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCATTAAATT
Found at i:10288532 original size:215 final size:216
Alignment explanation
Indices: 10288127--10288622 Score: 586
Period size: 215 Copynumber: 2.3 Consensus size: 216
10288117 CGAACTTGTC
* * * * *
10288127 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10288192 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* *** * * * *
10288257 ATTTTTTGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10288322 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * *
10288343 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
** * *
10288407 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
* *
10288471 AAATTTCCAAACATTCCATGCTCGGGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTGT
130 AAATTTCCAAACATTCCATGCTCGGAAAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
10288535 AAATAGGTTTTGGACTGTTAATT
194 AAACAAGTTTTGGACTGTTAATT
* ** * * *
10288558 AATAACTTAGCTACTTGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
10288623 AACTTATTTA
Statistics
Matches: 233, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
214 1 0.00
215 173 0.74
216 59 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10288732 original size:122 final size:124
Alignment explanation
Indices: 10288573--10288800 Score: 361
Period size: 122 Copynumber: 1.9 Consensus size: 124
10288563 CTTAGCTACT
*
10288573 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
1 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTGA
* *
10288638 AAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
66 AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACG
* * * *
10288697 TGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGTATTTACGTGA
1 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTGA
* *
10288760 GAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
66 AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
10288801 CTGAAACTTT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 84 0.88
123 2 0.02
124 9 0.09
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (124 bp):
TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACGTATTTACGTGA
AAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACG
Found at i:10288741 original size:60 final size:62
Alignment explanation
Indices: 10288573--10288800 Score: 361
Period size: 62 Copynumber: 3.7 Consensus size: 62
10288563 CTTAGCTACT
* *
10288573 TGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
*
10288635 TGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * *
10288697 TGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGTATTTACG
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * *
10288757 TGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10288801 CTGAAACTTT
Statistics
Matches: 153, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
60 54 0.35
61 4 0.03
62 95 0.62
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
Found at i:10289053 original size:62 final size:62
Alignment explanation
Indices: 10288987--10289146 Score: 248
Period size: 62 Copynumber: 2.6 Consensus size: 62
10288977 AATTGGTTCT
* * * *
10288987 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * *
10289049 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10289111 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10289147 CTTTTACGAT
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10289253 original size:340 final size:337
Alignment explanation
Indices: 10288620--10289361 Score: 1026
Period size: 340 Copynumber: 2.2 Consensus size: 337
10288610 CAAACTTGTC
* * * *
10288620 AAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10288685 AACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAGACGT
65 AACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGT
* *
10288750 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACG
130 ATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
* * * *
10288815 ATTTCTTTTATAACTTCGGTTCCTGAAAATATCCAAGATGATCCATTCTTTCGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCG
* * * *
10288880 AACATCCCATGCTTGGGAAATTGCATAATTTGGTCTAAATAGTTTGTC-TTTTCGTATACAAGTT
260 AACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTT-GTAAACAAGTT
* *
10288944 TCGATCC-TTGAATT
324 TCG-GCCTTTAAATT
10288958 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10289023 GACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
65 AACTTATTTACATGAGAACTGTTT--CTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10289088 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
128 GTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * *
10289153 CGATTTCTTTTATAACTTCGGTTCC-AAAAATTATTGAAGTTAATCCATTCCTTCTAGAAATTTT
193 CGATTTCTTTTATAACTTCGGTTCCTAAAAA-TATCCAAGATAATCCATTCCTTCGAGAAATTTT
* *
10289217 TCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
257 TCGAACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
10289282 TTTTGGCCTTTAAATT
322 TTTCGGCCTTTAAATT
** * * *
10289298 AAAAACTTACATACGTGAGAATT-GTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAA
1 AAAAACTTATTTACGTG-GAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10289361 A
64 A
10289362 CTTTCACGAG
Statistics
Matches: 358, Mismatches: 38, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
338 80 0.22
339 40 0.11
340 233 0.65
341 5 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (337 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACATGAGAACTGTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACGTA
TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGA
ACATCCCATGCTCGGAAAATTCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTC
GGCCTTTAAATT
Found at i:10289484 original size:215 final size:216
Alignment explanation
Indices: 10289082--10289577 Score: 644
Period size: 215 Copynumber: 2.3 Consensus size: 216
10289072 CGAACTTGTC
* * *
10289082 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * ** * **
10289147 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAATTATTGAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * *
10289212 ATTTTTCGAACATTCCATGCTCGGAAAATTCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
*
10289277 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTTAAA-T
* * * * * *
10289298 AAAAACTTACATACGTGAGAATTGTATGTC-CTTGGTTGTTGGACGAACTTTCGAACTGGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** *
10289362 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-
10289426 AAA-TTTCCAAACATTCCATGCTC-GAGAAA-TCACATCATTTGGTCAAAATAGTTTGTCATTTT
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATTC-CATCATTTGGTCAAAATAGTTTGTCATTTT
10289488 GAAAACAAGTTTTGGACTGTTAAAT
192 GAAAACAAGTTTTGGACTGTTAAAT
* * * *
10289513 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10289578 AACATATTTA
Statistics
Matches: 239, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 5 0.02
215 172 0.72
216 62 0.26
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (216 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATTCCATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
ACAAGTTTTGGACTGTTAAAT
Found at i:10289619 original size:61 final size:61
Alignment explanation
Indices: 10289523--10289694 Score: 265
Period size: 61 Copynumber: 2.8 Consensus size: 61
10289513 AATAACTTAG
10289523 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
**
10289585 TTACGTGAGAATTG-TTCTCTCTTGTTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTAT
1 TTACGTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
* * *
10289646 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACTTCCAAACTT
10289695 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
60 1 0.01
61 56 0.55
62 44 0.43
63 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (61 bp):
TTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATAT
Found at i:10290044 original size:60 final size:62
Alignment explanation
Indices: 10289852--10290221 Score: 635
Period size: 62 Copynumber: 6.0 Consensus size: 62
10289842 TCCTTGAATT
*
10289852 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10289914 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10289976 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10290036 AAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10290098 AAAAACTTATTTACGTGAGAATTGTTTCT-T-TTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10290158 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10290219 AAA
1 AAA
10290222 CTTTTATGAT
Statistics
Matches: 295, Mismatches: 8, Indels: 11
0.94 0.03 0.04
Matches are distributed among these distances:
60 116 0.39
61 20 0.07
62 158 0.54
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10290071 original size:122 final size:122
Alignment explanation
Indices: 10289852--10290221 Score: 654
Period size: 122 Copynumber: 3.0 Consensus size: 122
10289842 TCCTTGAATT
*
10289852 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTT-TCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10289916 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
63 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10289976 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
10290041 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10290098 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
* * *
10290163 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
66 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10290219 AAA
1 AAA
10290222 CTTTTATGAT
Statistics
Matches: 240, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
121 16 0.07
122 199 0.83
123 3 0.01
124 21 0.09
125 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (122 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10290414 original size:62 final size:62
Alignment explanation
Indices: 10290336--10290632 Score: 351
Period size: 62 Copynumber: 4.6 Consensus size: 62
10290326 GGTCTAAATA
* * *
10290336 GTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * *
10290398 GTTTCTCTGTTGGTTCTTGGACGAACTTGTTGTACGAACTTCCAAACTTGTCAAAAACTTATTTA
1 GTTTCTCTCTTGGTTCTTGGACGAAC----T-T-----C--CAAAC-TTGTCAAAAACTTATTTA
10290463 CGTGAGAATT
53 CGTGAGAATT
* *
10290473 GTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * *
10290535 GTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATCTTATTTACGTGAGAATT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10290597 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10290633 CTGAAACTTT
Statistics
Matches: 202, Mismatches: 20, Indels: 26
0.81 0.08 0.10
Matches are distributed among these distances:
62 139 0.69
63 3 0.01
65 1 0.00
66 1 0.00
67 1 0.00
70 1 0.00
71 1 0.00
72 1 0.00
74 3 0.01
75 51 0.25
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
Found at i:10290486 original size:75 final size:75
Alignment explanation
Indices: 10290358--10290500 Score: 259
Period size: 75 Copynumber: 1.9 Consensus size: 75
10290348 GTTCTTGGAT
* *
10290358 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTGTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10290423 CTTGTTGTAC
66 CTTGTTGTAC
*
10290433 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAA
1 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
10290498 CTT
66 CTT
10290501 CCAAACTTGT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 65 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (75 bp):
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTATCTTGGTTCTTGGACGAA
CTTGTTGTAC
Found at i:10290885 original size:62 final size:62
Alignment explanation
Indices: 10290819--10290978 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10290809 AATTGGTACT
* * * * *
10290819 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * * *
10290881 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
*
10290943 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10290979 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10291085 original size:340 final size:340
Alignment explanation
Indices: 10290450--10291190 Score: 1001
Period size: 340 Copynumber: 2.2 Consensus size: 340
10290440 CAAACTTGTC
* * * * *
10290450 AAAAACTTATTTACGTGAGAATTGTTTCTATCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10290515 CACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACTAACATCCAAACTTGTCAAAATC
66 CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
* * *
10290580 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * * *
10290645 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGGCCAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
* * * *
10290710 CGAACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGT
261 CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10290775 TTCGGTCC-TTGAATT
326 TTCGG-CCTTTAAATT
* *
10290790 GAAAACTTATTTACCTG-GCAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * *
10290854 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
65 ACACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTC-AAAA
*
10290919 T-TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 TCTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTT
* *
10290983 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAG-AAATT
194 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCC-ATCCTTCTAGCAAATT
* * * * *
10291047 TTTCGAACATTCCATGCTCG-GAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTATAC
258 TTTCGAACATCCCATGCTCGAG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10291111 AAGTTTTGGCCTTTAAATT
322 AAGTTTCGGCCTTTAAATT
* *
10291130 AAAAACTTATTTACGTGAGAATT-GTA-TCACCTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGGTACTC-TCTTGGTTCTTGGACGAACTTTCGAACTTGTC
10291191 CAACTTTCAC
Statistics
Matches: 350, Mismatches: 44, Indels: 15
0.86 0.11 0.04
Matches are distributed among these distances:
338 2 0.01
339 37 0.11
340 298 0.85
341 13 0.04
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTACTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CACTTATTTACATGAGAACTGTTTCACTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAATC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATCCTTCTAGCAAATTTTT
CGAACATCCCATGCTCGAGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:10291319 original size:215 final size:216
Alignment explanation
Indices: 10290914--10291409 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 216
10290904 CGAACTTGTC
* * * *
10290914 AAAAATTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10290979 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCAATCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
* * * * * * *
10291044 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTTTCATTTTGTAT
131 AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10291109 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * *
10291130 AAAAACTTATTTACGTGAGAATTGTATCAC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10291194 CTTTCACGAGTTCTTTTATAACTTAGGTTCCCTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCT-AGA
*
10291258 AAATTTCCAAACATTCCATGCTC-GAGACATCACATT-ATTTGGTCAAAATAGTTTGTCATTTTG
130 AAATTTCCAAACATTCCATGCTCGGA-AAATC-CATTCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10291321 TAAATAGGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * * * *
10291345 AATAACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10291410 AACTTATTTA
Statistics
Matches: 235, Mismatches: 40, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 173 0.74
216 59 0.25
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCAATCCTTCTAGAA
AATTTCCAAACATTCCATGCTCGGAAAATCCATTCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10291446 original size:62 final size:62
Alignment explanation
Indices: 10291348--10291773 Score: 703
Period size: 62 Copynumber: 6.9 Consensus size: 62
10291338 GTTAATTAAT
* * *
10291348 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10291410 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10291472 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10291534 CACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10291596 AACTTATTTCCGTGAGAATTGTTTCT-T-TTGGTTCATGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** * *
10291656 AACTTATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10291718 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10291774 CTGAAACTTT
Statistics
Matches: 341, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
60 57 0.17
61 2 0.01
62 282 0.83
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10291695 original size:184 final size:185
Alignment explanation
Indices: 10291348--10291773 Score: 703
Period size: 184 Copynumber: 2.3 Consensus size: 185
10291338 GTTAATTAAT
* * *
10291348 AACTTAGTTACTTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10291413 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCATGGACGAACTTCCAAACTTGTCAAAAACTTA
** *
10291478 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
131 TTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATCCAAACTTGTCAA
10291533 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* *
10291598 CTTATTTCCGTGAGAATTGTTTCT-T-TTGGTTCATGGACGAACTTCCAAACTTGTCAAAAACTT
65 CTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCATGGACGAACTTCCAAACTTGTCAAAAACTT
* *
10291661 ATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTCAA
130 ATTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATCCAAACTTGTCAA
* *
10291717 AATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10291774 CTGAAACTTT
Statistics
Matches: 226, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
183 1 0.00
184 141 0.62
185 2 0.01
186 82 0.36
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (185 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAAAATTGTTTCTCTCTTGGTTCATGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTCATTCTTGGACGAACATCCAAACTTGTCAA
Found at i:10292025 original size:62 final size:61
Alignment explanation
Indices: 10291959--10292117 Score: 192
Period size: 62 Copynumber: 2.6 Consensus size: 61
10291949 AATTGGTTCT
* * * *
10291959 CTCTTGTTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCA
1 CTCTTGGTTCTTGGAC-AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * * * *
10292021 CTCTTGGTTCTTTGACGAACTTTCGAATTTGTCAAAAACTTATTTACGTAAGAATTATTTCT
1 CTCTTGGTTCTTGGAC-AACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * *
10292083 CTCTTGGTTCCTGGACGACATTCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACAACTTTCGAACTTGTCAAA
10292118 CTTTTATGAT
Statistics
Matches: 82, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 16 0.20
62 66 0.80
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.40
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10292363 original size:62 final size:62
Alignment explanation
Indices: 10292297--10292456 Score: 221
Period size: 62 Copynumber: 2.6 Consensus size: 62
10292287 AATTGGTACT
* * * *
10292297 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTACTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
* * * ** *
10292359 CTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
*
10292421 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10292457 CTTTTACGAT
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 86 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTACTTCA
Found at i:10292670 original size:339 final size:341
Alignment explanation
Indices: 10291593--10292671 Score: 1382
Period size: 339 Copynumber: 3.2 Consensus size: 341
10291583 CAAACTTGTC
* * * * *
10291593 AAAAACTTATTTCCGTGAG-AATT-GT-T-TCTTTTGGTTCATGGACGAACTTCCAAACTTGTCA
1 AAAAACTTATTTACGTG-GCAATTGGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * * * * * ** * * *
10291654 AAAACTTATTTGCGTGAGAATTGTTTCTCTCTTCATTCTTGGACTAACATCCAAACTTGTC-AAA
65 AAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAA
* * *
10291718 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTT
130 AT-TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* ** * * * * **
10291783 TTACTATTT-TTTTATAACTTCGGTTCCTGAAAGTATTCAGGATGATCCATTCTTTC-ACCCAAT
194 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTA-GAAAT
* *
10291846 TTTTCGAACATCCCATGCTTAGG-AAATTGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
258 TTTTCGAACATCCCATGC-TCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
*
10291910 CAAGTTTCGGTCCATGAATT
322 CAAGTTTCGGTCCTTGAATT
* *
10291930 AAAAACTTATTTACGTGGCAATTGGT-TCTCTCTTGTTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGGCAATTGGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10291994 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTTGACGAACTTTCGAATTTGTCAAAAA
66 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
* * * *
10292059 CTTATTTACGTAAGAATTATTTCTCTCTTGGTTCCTGGACG-ACATTCGAACTTGTCAAACTTTT
131 TTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * *
10292123 ATGATTTCTTCTATAACTTCGATTCCACAGAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
196 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * *
10292188 T-GAACATCCCATTCTC-GAGAAATCGCATAATTTAGTCTAAATTGTTTGTCTTTTTGTAAACAA
261 TCGAACATCCCATGCTCGGA-AAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
10292251 GTTTCGGTCCTTGAATT
325 GTTTCGGTCCTTGAATT
* * *
10292268 GAAAACTTATTCACCTGGCAATTGGTA-CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGGCAATTGGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
*
10292332 AGACTTATTTACATGAGTACTACTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
66 AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
*
10292397 TTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
131 TTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
*
10292462 ACGATTTCTTTTATAACTTCGGCTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
196 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * * * * *
10292527 TCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAG
261 TCGAACATCCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
* *
10292592 TTTTGG-CCTTTAAATT
326 TTTCGGTCC-TTGAATT
* *
10292608 AAAAACTTATTTACGTGAG-AATT-GTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTCA
1 AAAAACTTATTTACGTG-GCAATTGGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
10292670 AA
65 AA
10292672 CTTTGACGAG
Statistics
Matches: 642, Mismatches: 85, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
336 2 0.00
337 21 0.03
338 252 0.39
339 276 0.43
340 88 0.14
341 3 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (341 bp):
AAAAACTTATTTACGTGGCAATTGGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
AGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
TTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TCGAACATCCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
TTTCGGTCCTTGAATT
Found at i:10292795 original size:215 final size:216
Alignment explanation
Indices: 10292392--10292887 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
10292382 CGAACTTGTC
* * * *
10292392 AAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * **
10292457 CTTTTACGATTTCTTTTATAACTTCGGCTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTGACGAGTTCTTTTATAACTTCGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * * *
10292522 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTAA
**
10292587 ACAAGTTTTGG-CCTTTAAATT
196 ACAAGTTTTGGACAGTT-AATT
* * * *
10292608 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * ** *
10292672 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTGACGAGTTCTTTTATAACTTCGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-
*
10292736 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTGTGTCATTTTG
10292799 TAAACAAGTTTTGGACAGTTAATT
193 TAAACAAGTTTTGGACAGTTAATT
* * * *
10292823 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10292888 AACTTATTTA
Statistics
Matches: 241, Mismatches: 34, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
214 3 0.01
215 177 0.73
216 61 0.25
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTGACGAGTTCTTTTATAACTTCGGCTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTGTGTCATTTTGTAA
ACAAGTTTTGGACAGTTAATT
Found at i:10292924 original size:62 final size:62
Alignment explanation
Indices: 10292826--10293005 Score: 288
Period size: 62 Copynumber: 2.9 Consensus size: 62
10292816 GTTAATTAAT
* *
10292826 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10292888 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10292950 ATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10293006 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10293199 original size:555 final size:551
Alignment explanation
Indices: 10292054--10293226 Score: 1414
Period size: 555 Copynumber: 2.1 Consensus size: 551
10292044 CGAATTTGTC
* * *
10292054 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCCTGGACGACATTCGAACTTGTCAAAC
1 AAAAACTTATTTACGT-GGAATT-GTTCTCTCTTGGTTCTTGGACGA-ATTCGAACTTGTCAAAC
* * * * * **
10292119 TTTTATGATTTCTTCTATAACTTCGATTCCACAGAGTATTCAAGTTAATCCATTCCTTCTAGAAA
63 TTTGACGAGTTCTTCTATAACTTCGATTCCACAAAGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * * *
10292184 TTTTTGAACATCCCATTCTCGAGAAATCGCATAATTTAGTCTAAATTGTTTGTCTTTTTGTAAAC
128 TTTCCAAACATCCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTTGTCATTTTGTAAAC
* *
10292249 AAGTTTCGGTCCTTGAATTGAAAACTTATTCACCTGGCAATTGGTACTCTCTTGGTTCTTGGACG
193 AAGTTTCGGACCTTGAATTGAAAACTTATTCACCTGGCAATTGGTACTCTCTTAGTTCTTGGACG
* * * ** *
10292314 AACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTACTTCACTCTTGGTTCTTGGACAAAC
258 AACTTCCAAACTTGTCAAAAACTTATTTACATGAAAAATACTTCACTCTTGGTTCTTGGACAAAC
*
10292379 TTCCGAACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
323 TTCCAAACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
* * * * *
10292444 CGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGCTCCAAAAAGTATTCAAGTTAATCC
388 CGAACTTCTCAAACTTTTACGATTTCTTTTATAACTCCAGCTCCAAAAAGTATCCAAGATAATCC
* * * * * *
10292509 ATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTG
453 ATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCCAAATAGTG
* * *
10292574 TGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
518 TGTCATTTTCTAAAAAAGTTTCGGCCTTTAAATT
*
10292608 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGT-TCTCTCTTGGTTCTTGGACGAA--TTCGAACTTGTCAAA
* * * ** *
10292672 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
62 CTTTGACGAGTTCTTCTATAACTTCGATTCCACAAAGCATTCAAGACAATCCATTCCTTCT-AG-
* * *
10292736 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
125 AAATTTCCAAACATCCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTTGTCATTTTGTA
* * * * *
10292801 AACAAGTTTTGGACAGTT-AATT-AATAACTTAGTT-ACGTGAG-AATTGTTTCTCTCTTAGTTC
190 AACAAGTTTCGGAC-CTTGAATTGAA-AACTTA-TTCACCTG-GCAATTGGTACTCTCTTAGTTC
* ** *
10292862 TTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTG
251 TTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAAAAATACTTCACTCTTGGTTCTTG
* *
10292927 GACGAACTTCCAAACTTGTC-AAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
316 GACAAACTTCCAAACTTGTCAAAAAT-TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGA
* * **
10292991 CGAACATCCGAACTTCTGAAACTTTTACGATTTCTTTTAATAACTCCAG-TTCTGAAAGTATCCA
380 CGAACATCCGAACTTCTCAAACTTTTACGATTTCTTTT-ATAACTCCAGCTCCAAAAAGTATCCA
* * * * *
10293055 AGATGATCCATT-CTTCGACCAGTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTC
444 AGATAATCCATTCCTTCGACAAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTC
* * *
10293119 CAAATAGAT-TTTCTTTTTCTAAAAAAGTTTCGGTCC-TTGAATT
509 CAAATAG-TGTGTCATTTTCTAAAAAAGTTTCGG-CCTTTAAATT
10293162 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGG-AATT-GTTCTCTCTTGGTTCTTGGACG-A-ATTCGAACTTGTCAAA
10293227 GACTTATTTA
Statistics
Matches: 525, Mismatches: 75, Indels: 37
0.82 0.12 0.06
Matches are distributed among these distances:
552 1 0.00
553 17 0.03
554 194 0.37
555 298 0.57
556 14 0.03
557 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (551 bp):
AAAAACTTATTTACGTGGAATTGTTCTCTCTTGGTTCTTGGACGAATTCGAACTTGTCAAACTTT
GACGAGTTCTTCTATAACTTCGATTCCACAAAGCATTCAAGACAATCCATTCCTTCTAGAAATTT
CCAAACATCCCATGCTCGAGAAATCACATAATTTAGTCAAAATAGTTTGTCATTTTGTAAACAAG
TTTCGGACCTTGAATTGAAAACTTATTCACCTGGCAATTGGTACTCTCTTAGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACATGAAAAATACTTCACTCTTGGTTCTTGGACAAACTTC
CAAACTTGTCAAAAATTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA
ACTTCTCAAACTTTTACGATTTCTTTTATAACTCCAGCTCCAAAAAGTATCCAAGATAATCCATT
CCTTCGACAAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCCAAATAGTGTGT
CATTTTCTAAAAAAGTTTCGGCCTTTAAATT
Found at i:10293234 original size:339 final size:335
Alignment explanation
Indices: 10292608--10293553 Score: 1109
Period size: 339 Copynumber: 2.8 Consensus size: 335
10292598 CCTTTAAATT
* * ** *
10292608 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAATTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
10292672 CTTTGACGAGTTCTTTTATAACTTGGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATGATCCATT-CTTAGA-CA
* * *
10292737 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
129 ATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTT-TCATTTTGTAA
* * * * *
10292802 ACAAGTTTTGGACAGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
193 ACAAGTTTTGG-C-CTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * *
10292867 CGAAC-TTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACG
256 CGAACATT-CGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACG
10292931 AACTTCCAAACTTGTC
320 AACTTCCAAACTTGTC
* * * *
10292947 AAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
10293012 CTTTTACGATTTCTTTTAATAACTCCAGTT-CTGAAAGTATCCAAGATGATCCATTCTTCGACCA
66 CTTTTACGATTTCTTTT-ATAACTTCGGTTCCTAAAAGAATTCAAGATGATCCATTCTTAGA-CA
* * * * * * * *
10293076 GTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCCAAATAGATTTTCTTTTTCTAA
129 ATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAG-TTTTCATTTTGTAA
* *
10293141 AAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGG
193 ACAAGTTTTGG-CCTT-AATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGG
* ** * **
10293205 ACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATT
255 ACGAACATTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACG
*
10293270 AACTTCCGAACTTGTC
320 AACTTCCAAACTTGTC
* * *
10293286 AAAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10293351 CTTTTAGGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTAGTTAATCC-TTC-TAGA-AAT
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATGATCCATTCTTAGACAAT
* * * * *
10293413 TTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTAAAC
131 TTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGT-TTTCATTTTGTAAAC
*
10293478 AAGTTTTGGCCTTTAAATCAAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACG
195 AAGTTTTGGCC-TT-AATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
*
10293541 AACATCCGAACTT
258 AACATTCGAACTT
10293554 CTGAAACTTT
Statistics
Matches: 514, Mismatches: 83, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
333 30 0.06
334 6 0.01
335 88 0.17
336 1 0.00
337 3 0.01
338 16 0.03
339 292 0.57
340 69 0.13
341 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (335 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGAATTCAAGATGATCCATTCTTAGACAAT
TTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTTCATTTTGTAAACA
AGTTTTGGCCTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC
ATTCGAACTTGTCAAAAACTTATTTACATGAAAAATGTTTCACTCTTGGTTCTTGGACGAACTTC
CAAACTTGTC
Found at i:10293263 original size:62 final size:62
Alignment explanation
Indices: 10293191--10293350 Score: 205
Period size: 62 Copynumber: 2.6 Consensus size: 62
10293181 AATTGGTTCT
* * * * *
10293191 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTAGTTACATAAGAACTGTTACA
** * * *
10293253 CTCTTGGTTCTTGGATTAAC-TTCCGAACTTGTCAAAAACTTAGTTACGTAAGAATTGTTACT
1 CTCTTGGTTCTTGGACGAACATT-CGAACTTGTCAAAAACTTAGTTACATAAGAACTGTTACA
*
10293315 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10293351 CTTTTAGGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
61 2 0.02
62 80 0.96
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTAGTTACATAAGAACTGTTACA
Found at i:10293574 original size:209 final size:212
Alignment explanation
Indices: 10293284--10293774 Score: 607
Period size: 213 Copynumber: 2.3 Consensus size: 212
10293274 TCCGAACTTG
* * *
10293284 TCAAAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 TCAAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCA
* * *
10293349 AACTTTTAGGATTTCTTTTATAACTTCGGTTCCAAAAAGAATTCTA-G-T-T-AATCCTTCTAGA
65 AACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAA-AATTCCAGGATATCAATCCTTCTACA
* * *
10293410 AATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGTA
128 AATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTA
*
10293475 AACAAGTTTTGGCCTTTAAA
193 AACAAGTTTCGGCCTTTAAA
*
10293495 TCAAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAA
1 TCAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAA
* ** * *
10293559 ACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATTCCAGGATGATCCATTCTTTCTACAA
66 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAATTCCAGGAT-AT-CAATCCTTCTACAA
* ** * * *
10293624 ATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
129 ATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTAA
* *
10293689 ACAAGTTTCGGTCTTTGAA
194 ACAAGTTTCGGCCTTTAAA
* * * * * *
10293708 TTAAAAACTTATTTACG-GGGCAGTTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 TCAAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTC
10293772 AAA
64 AAA
10293775 GATTTATTTA
Statistics
Matches: 240, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
207 6 0.03
208 3 0.01
209 65 0.27
211 27 0.11
212 2 0.01
213 101 0.42
214 3 0.01
215 33 0.14
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (212 bp):
TCAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAA
ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAATTCCAGGATATCAATCCTTCTACAAAT
TTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTGTGTCATTTTGTAAAC
AAGTTTCGGCCTTTAAA
Found at i:10293807 original size:62 final size:62
Alignment explanation
Indices: 10293739--10293898 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 62
10293729 AGTTGGTTCT
* * * * *
10293739 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGATTTATTTACACGAGTACTATTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTATTTCA
* * ** * * *
10293801 CTCTTGGTTCTTTGTCGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTATTTCA
*
10293863 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10293899 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACACAAGAACTATTTCA
Found at i:10294218 original size:214 final size:215
Alignment explanation
Indices: 10293834--10294327 Score: 656
Period size: 214 Copynumber: 2.3 Consensus size: 215
10293824 CGAACTTGTC
* * *
10293834 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10293899 CTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTGAAA
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGATAATCCATTCCTTCTGAAA
* * * * * *
10293964 TTTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATACCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
10294029 CAAGTTTTGG-CATTTAAATT
196 CAAGTTTTGGAC-TGTAAATT
* * *
10294049 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * ** *
10294113 CTTTCAGGAGTT-TTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGATAATCCATTCCTTCTGA--
* *
10294176 AAATTTCCAAACATACCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTGT
129 AAATTTCCAAACATACCATGCTCGGA-AAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGT
*
10294240 AAACAAGTTTTGGACTGTGAATT
193 AAACAAGTTTTGGACTGTAAATT
* * *
10294263 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10294328 AACTTATTTA
Statistics
Matches: 242, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
212 3 0.01
213 41 0.17
214 138 0.57
215 60 0.25
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGATAATCCATTCCTTCTGAAA
ATTTCCAAACATACCATGCTCGGAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTAAATT
Found at i:10294364 original size:62 final size:62
Alignment explanation
Indices: 10294266--10294445 Score: 315
Period size: 62 Copynumber: 2.9 Consensus size: 62
10294256 GTGAATTAAT
* *
10294266 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10294328 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10294390 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10294446 CTGAAACTTT
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10294760 original size:62 final size:61
Alignment explanation
Indices: 10294604--10294790 Score: 252
Period size: 61 Copynumber: 3.0 Consensus size: 61
10294594 TCCTTGAATT
* * * *
10294604 AAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TGTC
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10294665 AAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10294727 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACTTCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10294788 AAA
1 AAA
10294791 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 64 0.59
62 45 0.41
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10295209 original size:209 final size:212
Alignment explanation
Indices: 10294727--10295211 Score: 601
Period size: 212 Copynumber: 2.3 Consensus size: 212
10294717 CGAACTTGTC
*
10294727 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCT-TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
10294791 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCTAGTTAATCCATTCTTCTAGAAA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCCATTCTTCGAGAAA
* * * * *
10294856 TTTTTCGAACATTCCATGCTCGGAAAATCCTTCATTGGTCTAAATAGTTTGTCATTTTGTAAACA
130 TTTTCCAAACATACCATGCTCGGAAAATCCATCATTGGTCAAAATAGTTTGTCATTTTGTAAACA
* * *
10294921 AGTTTTGGCCTTTAAATT
195 AGTTTTGGACTTGAAAGT
* * * * *
10294939 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* ** *
10295004 TTTCACGAGTTCTTTTATAATTTAGGTTCCTTAAAG-ATTCAAGATGATCCATTCCTT-GAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCCATT-CTTCGAG-AA
10295067 A-TTTCCAAACATACCATGCTC-GAGAAAT-CATCATTTGGTCAAAATAGTTTGTCA-TTTGT-A
129 ATTTTCCAAACATACCATGCTCGGA-AAATCCATCA-TTGGTCAAAATAGTTTGTCATTTTGTAA
10295127 ACAAG-TTTGGACTGTGAAAGT
192 ACAAGTTTTGGACT-TGAAAGT
* * * *
10295148 AATAACTTAGTTACGTGAGAATTGTTTCTTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10295212 ACTTATTTAC
Statistics
Matches: 234, Mismatches: 33, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
208 7 0.03
209 66 0.28
210 11 0.05
211 69 0.29
212 81 0.35
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (212 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCCATTCTTCGAGAAAT
TTTCCAAACATACCATGCTCGGAAAATCCATCATTGGTCAAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGACTTGAAAGT
Found at i:10295267 original size:61 final size:61
Alignment explanation
Indices: 10295151--10295377 Score: 361
Period size: 60 Copynumber: 3.8 Consensus size: 61
10295141 TGAAAGTAAT
* *
10295151 AACTTAGTTACGTGAGAATTGTTTCT-TCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10295211 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
* *
10295273 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10295332 AAATTATTTACGTGAGAATTGTTTTTCTCTTGGATCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10295378 ATTCGAACTT
Statistics
Matches: 156, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
59 22 0.14
60 59 0.38
61 52 0.33
62 23 0.15
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10295387 original size:121 final size:122
Alignment explanation
Indices: 10295151--10295377 Score: 384
Period size: 121 Copynumber: 1.9 Consensus size: 122
10295141 TGAAAGTAAT
* *
10295151 AACTTAGTTACGTGAGAATTGTTTCTTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAACTT
1 AACTTAGTTACGTGAGAATTGTTTCTTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAAATT
*
10295216 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 ATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10295273 AACTTATTTACGTGAGAATTGTTTC-TCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAATT
1 AACTTAGTTACGTGAGAATTGTTTCTTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAAATT
*
10295337 ATTTACGTGAGAATTGTTTTTCTCTTGGATCTTGGACGAAC
66 ATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAAC
10295378 ATTCGAACTT
Statistics
Matches: 98, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
121 74 0.76
122 24 0.24
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (122 bp):
AACTTAGTTACGTGAGAATTGTTTCTTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAAATT
ATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10295704 original size:62 final size:61
Alignment explanation
Indices: 10295573--10295785 Score: 211
Period size: 61 Copynumber: 3.4 Consensus size: 61
10295563 AATGGATCAT
* * ** * * *
10295573 AAACAATTGTTACGGTAAATAAG-TTTTGACAAGTTCAGATGTT-ATCCAAGAACGAAGAGA
1 AAACAATTCTCAC-GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
10295633 GAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 -AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
* * *
10295695 AAACAAATTCT-ACGTAAAAAAGTTTTTTGACAAG-CTGGAAGTTCGTCTCCAAGAACTAAGAGA
1 AAAC-AATTCTCACGTAAATAAG-TTTTTGACAAGTTTGGAAGTTCG--TCCAAGAACCAAGAGA
* *
10295758 GAACCAGTTGC-CACGTAAATAAGTTTTT
1 -AAACAATT-CTCACGTAAATAAGTTTTT
10295786 AATTCAAGAA
Statistics
Matches: 130, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
60 9 0.07
61 52 0.40
62 32 0.25
63 23 0.18
64 14 0.11
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (61 bp):
AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
Found at i:10296127 original size:61 final size:62
Alignment explanation
Indices: 10295935--10296239 Score: 429
Period size: 61 Copynumber: 5.0 Consensus size: 62
10295925 ATCGTAAAAG
* * * * *
10295935 TTTGTCAAGTTTGGATGTTCATCCAAGAACCAAGAGAGAAGCAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10295997 TTTGATATGTTCGGATGTTAGTCCAAGAACCAAGAGAG--ACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10296057 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA-ATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10296118 TTTAACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10296180 TTTGACAAGTTCGAAAGTTCG-CCAAAAACTAAGAGAGAAACAATTCTCACGTAACTAAGT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10296240 ATTAATTAAC
Statistics
Matches: 218, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
60 53 0.24
61 95 0.44
62 70 0.32
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10296145 original size:54 final size:55
Alignment explanation
Indices: 10296085--10296204 Score: 127
Period size: 62 Copynumber: 2.1 Consensus size: 55
10296075 TCGTCCAAGA
* *
10296085 ACCAAGAGAGAAACAATTCTCA-ATAAATAAGTTTTTAACAAGTTTGGAAGTTCGTCCAAG
1 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAACAAGTTCGAAAG-T--T-C--G
* *
10296145 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCG
1 -ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAACAAGTTCGAAAGTTCG
10296201 -CCAA
1 ACCAA
10296205 AAACTAAGAG
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
54 4 0.07
56 1 0.02
58 1 0.02
59 1 0.02
61 23 0.43
62 24 0.44
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (55 bp):
ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAACAAGTTCGAAAGTTCG
Found at i:10296813 original size:61 final size:62
Alignment explanation
Indices: 10296689--10296876 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10296679 CGTATAAAAG
* * * * *
10296689 TTTGACAAGTTCGGAAGTTCGTCTAAGAAGCGAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10296751 TTTGACAAGTTCGGAAGTTCGACCAAGAA-CAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10296812 TTTGACAAGTTTGAAAGTTC-ATCCAAGAACCAATG-GAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGA-CCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTT
10296874 TTT
1 TTT
10296877 AATTCAAGGA
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
60 1 0.01
61 53 0.48
62 56 0.50
63 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGACCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10297108 original size:60 final size:60
Alignment explanation
Indices: 10297024--10297147 Score: 203
Period size: 60 Copynumber: 2.1 Consensus size: 60
10297014 AATCGTAAAC
* * *
10297024 GTTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTGTCACGTAAATAA
1 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGCCACGTAAATAA
* *
10297084 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCATGTAAATAA
1 GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGCCACGTAAATAA
10297144 GTTT
1 GTTT
10297148 TTAATTCAAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (60 bp):
GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGCCACGTAAATAA
Found at i:10297332 original size:62 final size:62
Alignment explanation
Indices: 10297255--10297470 Score: 267
Period size: 62 Copynumber: 3.4 Consensus size: 62
10297245 AATGGATCAT
* * * * * *
10297255 AAACAATTGTTACGTAAATAAGTTTTTGACAAGTTCAGATGTT-ATCCAAGAACGAAGAGGAG
1 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTT-GGAAGTTCGTCCAAGAACCAAGAGGAG
10297317 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGA-GAG
1 AAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTGGAAGTTCGTCCAAGAACCAAGAGGAG
* *
10297379 AAACAATTCTCACGTAAAAAAGTTTTTGACAAGCTTGGAAGTTCGTCCAAGAACTAAGAAGAGAG
1 AAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTGGAAGTTCGTCCAAGAACCAAG-AG-GAG
* *
10297444 AACCAGTTGC-CACGTAAATAAGTTTTT
1 AAACAATT-CTCACGTAAATAAGTTTTT
10297471 ATTCAAGAAC
Statistics
Matches: 136, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
62 94 0.69
63 16 0.12
65 25 0.18
66 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.26
Consensus pattern (62 bp):
AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTGGAAGTTCGTCCAAGAACCAAGAGGAG
Found at i:10297780 original size:123 final size:122
Alignment explanation
Indices: 10297619--10297924 Score: 386
Period size: 123 Copynumber: 2.5 Consensus size: 122
10297609 ATCGTAAAAG
* * * * * *
10297619 TTTGTCAAG-TTGGATGTTCATCCAAGAACCAAGAGAGAAGCAATTCTTACGTAATAAGTTTTTG
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAATAAGTTTTTA
* * *
10297683 ATATGTTCGGATGTTAGTCCAAGAACCCAGAGAGAGAAACAATTCTCACGTAAATAAG-T
65 ACAAGTTCGGAAGTTAGTCCAAGAA-CCA-AGAGAGAAACAATTCTCACGTAAATAAGTT
*
10297742 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGT-AATAAGTTTTTA
* *
10297807 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
65 ACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10297865 TTTGACAAGTTCGAAAGTTCG-CAAAAAACTAAGAGAGAAAC-ATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAA-TAAGTT
10297925 ATAATTAACA
Statistics
Matches: 161, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
121 2 0.01
122 49 0.30
123 62 0.39
124 48 0.30
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (122 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAATAAGTTTTTAA
CAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10297797 original size:60 final size:62
Alignment explanation
Indices: 10297619--10297924 Score: 390
Period size: 61 Copynumber: 5.0 Consensus size: 62
10297609 ATCGTAAAAG
* * * * *
10297619 TTTGTCAAG-TTGGATGTTCATCCAAGAACCAAGAGAGAAGCAATTCTTACGT-AATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10297679 TTTGATATGTTCGGATGTTAGTCCAAGAACCCAGAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAA-CCA-AGAGAGAAACAATTCTCACGTAAATAAGTT
*
10297742 TTTGACAAGTTTGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10297803 TTTAACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10297865 TTTGACAAGTTCGAAAGTTCG-CAAAAAACTAAGAGAGAAAC-ATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10297925 ATAATTAACA
Statistics
Matches: 217, Mismatches: 23, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
60 51 0.24
61 64 0.29
62 52 0.24
63 44 0.20
64 6 0.03
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10298191 original size:81 final size:81
Alignment explanation
Indices: 10298052--10298219 Score: 216
Period size: 81 Copynumber: 2.1 Consensus size: 81
10298042 TTAAGGAACC
* * * *
10298052 TAAGTTATTAAAGAACTCGTGTGAAAGTTTGACAAGCTCGAAAGTTCGTCCAAGAACCAA-GAGA
1 TAAGTCATAAAAGAACTCG-GTGAAAGTTTGACAAGCTCGAAAGTTCATCCAACAACCAATGAGA
10298116 GAACCAATTGC-CACATAAA
65 -AA-CAATT-CTCACATAAA
* * *
10298135 TAAGTCATAAAAGAACTC-GTGAGAGTTTGACAAGCTTGAAAGTTCATCCAACAACCAATGAGAT
1 TAAGTCATAAAAGAACTCGGTGAAAGTTTGACAAGCTCGAAAGTTCATCCAACAACCAATGAGAA
10298199 ACAATTCTCACATAAA
66 ACAATTCTCACATAAA
10298215 TAAGT
1 TAAGT
10298220 TTTTAATTGA
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 1 0.01
80 18 0.24
81 37 0.49
82 4 0.05
83 16 0.21
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (81 bp):
TAAGTCATAAAAGAACTCGGTGAAAGTTTGACAAGCTCGAAAGTTCATCCAACAACCAATGAGAA
ACAATTCTCACATAAA
Found at i:10298513 original size:216 final size:215
Alignment explanation
Indices: 10298135--10298655 Score: 678
Period size: 217 Copynumber: 2.4 Consensus size: 215
10298125 GCCACATAAA
* * *
10298135 TAAGTCATAAAAGAACTCGTGAGAGTTTGACAAGCTTGAAAGTTCATCCAACAACCAATGAGATA
1 TAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGCTTGAAAGTTCATCCAACAACCAAGGAGATA
10298200 CAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAATGGTTTACAAAATGACAAACTAGT
66 CAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAATGGTTTACAAAATGACAAACTAGT
* * * * *
10298265 TTGACCAAATGATGTGATTTCTTGAGCATGGAATG-TTTAGAAATTGTTC-A-AAGGAATGGATC
131 TAGACCAAATGATGGGATTTCTCGAGCATGGAATGCTTGA-AAATT-TTCTAGAACGAATGGATC
*
10298327 ATCTTGAATACTTTAAGGAACC
194 ACCTTGAATACTTTAAGGAACC
10298349 TAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGCTTGAAAGTTCATCCAACAACCAAACAAGGA
1 TAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGCTTGAAAGTTCATCCAACAA-C---CAAGGA
* *
10298414 GATACAA-TCTCACTTAAATAAG-TTTTAATTGAAAGACCAAAACTGGTTTACAAAATGACAAAC
62 GATACAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAATGGTTTACAAAATGACAAAC
*
10298477 TAGTTAGACCAAATGATGGGATTT-TCCGAGCATGGAATGCTTGAAAATTTTCTAGAACTAATGG
127 TAGTTAGACCAAATGATGGGATTTCT-CGAGCATGGAATGCTTGAAAATTTTCTAGAACGAATGG
* ** *
10298541 ATTACCTTGAATACTTTTTGGAATC
191 ATCACCTTGAATACTTTAAGGAACC
* * * * * * * *
10298566 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAG-TTCGGATGTTCGTCCAAGAAGCAAGAGAGA
1 TAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGCTT-GAAAGTTCATCCAACAACCAAG-GAGA
* *
10298630 AACAATTCTCACGTAAATAAGTTTTT
64 TACAATTCTCACATAAATAAGTTTTT
10298656 GACAAGTTCA
Statistics
Matches: 269, Mismatches: 26, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
213 4 0.01
214 60 0.22
215 19 0.07
216 86 0.32
217 88 0.33
218 12 0.04
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
TAAGTTATAAAAGAACTCGTGAAAGTTTGACAAGCTTGAAAGTTCATCCAACAACCAAGGAGATA
CAATTCTCACATAAATAAGTTTTTAATTGAAAGACCAAAAATGGTTTACAAAATGACAAACTAGT
TAGACCAAATGATGGGATTTCTCGAGCATGGAATGCTTGAAAATTTTCTAGAACGAATGGATCAC
CTTGAATACTTTAAGGAACC
Found at i:10298688 original size:62 final size:62
Alignment explanation
Indices: 10298591--10298779 Score: 274
Period size: 62 Copynumber: 3.0 Consensus size: 62
10298581 ATCGTAAAAG
* * *
10298591 TTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10298653 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10298715 TTTGACAAGTT-TGAAAGTTCATCCAAGAACCAATG-GAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCTCACGTAAATAAGTT
10298777 TTT
1 TTT
10298780 AATTCAAGGA
Statistics
Matches: 115, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
61 1 0.01
62 113 0.98
63 1 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10299028 original size:62 final size:62
Alignment explanation
Indices: 10298931--10299239 Score: 467
Period size: 62 Copynumber: 5.0 Consensus size: 62
10298921 ATCGTAAAAG
* * *
10298931 TTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10298993 TTTGACAAGTTAGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10299055 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10299117 TTTGACAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10299179 TTTGACAAGTTTGGACGTTTGTCCAAGAAACTA-AGAGAAACAATTCTCACATAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10299240 ATTAATTAAC
Statistics
Matches: 229, Mismatches: 18, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
61 26 0.11
62 203 0.89
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10299056 original size:340 final size:337
Alignment explanation
Indices: 10298374--10299979 Score: 1173
Period size: 340 Copynumber: 4.7 Consensus size: 337
10298364 CTCGTGAAAG
* * *
10298374 TTTGACAAGCTTGAAAGTTCATCCAACAACCAAACAAGGAGATACAA-TCTCACTTAAATAAG-T
1 TTTGACAAGTTTGAAAGTTCATCCAAGAA-C---CAAGGAGA-ACAATTCTCACGTAAATAAGTT
* * * * * * * *
10298437 TTTAATTGAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAATGATGGGATTTT
61 TTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGA-CAAATTATGCGA-TTT
* ** * * ** * * * * ** *
10298502 CC-GAGCATGGAATGCTTGAAAATTTTCTAGAACTAATGGATTACCTTGAATACTTTTTGGAATC
124 CCTGAGCATGGATTGCTCAAAAAATTGCTAGAAAGAATGGATCATCTCGAATGCTTTCAGGAACC
10298566 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAA
189 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAA
10298631 ACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAAAC
254 ACAATTCTCACGTAAATAAGTTTTTGACAAGTT-AGAAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
10298695 AATACTCATGTAAATAAGTT
318 AATACTCACGTAAATAAGTT
10298715 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATGGAGAACCAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAA-GGAGAA-CAATTCTCACGTAAATAAGTTTTT
* *
10298780 AATTCAAGGACCGAAACTTGTTTACAAAAAAGACAAACTATTTTGAAAAATTATGCGATTTCCTG
64 AATTCAAGGACCGAAACTTGTTTAC-AAAAAGACAAACTATTTAGACAAATTATGCGATTTCCTG
* *
10298845 AGCATGGATTGCTCGAAAAATTGCTCGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAG
128 AGCATGGATTGCTCAAAAAATTGCTAGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAG
* *
10298910 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAA
193 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAA
* * * *
10298975 TTCTCACGTAAATAAGTTTTTGACAAGTTAGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTC
258 TTCTCACGTAAATAAGTTTTTGACAAGTTAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATAC
*
10299040 TCACGTAATTAAGTT
323 TCACGTAAATAAGTT
* * * *
10299055 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAG-AACAATTCTCACGTAAATAAGTTTTT
* **** ** ** * * * * *
10299120 GA--CAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
64 AATTCAAGGACCGAAACTTGT-TTACAA--AA-AGACAAACTATT-T-A-G-ACA-AA--TTATG
* * * * * * *** * ** * *
10299183 ACAAGTT--TG-G-A-CGTTTG-TCCAAGAAACTAAGAGAAACAAT-TCTCA-CATAACTAA-GT
118 -CGATTTCCTGAGCATGGATTGCT-CAAAAAATTGCTAGAAAGAATGGATCATC-T--CGAATGC
* ** * * * * *
10299239 TATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAAC-T---ATTTTGACCAAATAAT-
178 T-TTCA-GGA-A--CC-GAA---G-TT-AT-AAAA-GA-AATCGTAAAAGTTTGA-CAAGT--TC
* * * *** * * * * * *
10299299 GTGAT-TTC-T-CGAGCATGGAATGTTTG-GA-AATT-T-GCTTAAAGGAA----TGGA-TAGTC
226 G-GATGTTCGTCCAAG-AAGCAA-GAGAGAAACAATTCTCACGTAAA-TAAGTTTTTGACAAGT-
* * * ** * *
10299352 TTGAATGCTT--T--AAGAAGCCTCAGTTATAAA-AGA-ACT--CGT-GA-AAG--
286 TAGAAAG-TTCGTCCAAGAA-CC-AAGAGAGAAACA-ATACTCACGTAAATAAGTT
* * * *
10299396 TTTGACAAGTTCGAAAATTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTA
1 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGA-ACAATTCTCACGTAAATAAGTTTTTA
* * * * * *
10299461 ATTTAAAGG-CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TTC
65 A-TTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGA-CAAATTATGCGATTTCCT-
* * * * * * * * *
10299524 GAGCATGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGA
127 GAGCATGGATTGCTCAAAAAATTGCTAGAAAGAATGGATCATCTCGAATGC-TTTCAGGAACCGA
* *
10299588 AGTCATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTAGTCCAAGAAGCAAGAGAGAAAC
191 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAAC
* * *
10299653 AATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAAT
256 AATTCTCACGTAAATAAGTTTTTGACAAGTTAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
*
10299718 ACTCATGTAAATAAGTT
321 ACTCACGTAAATAAGTT
*
10299735 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATGGAGAACCAATTTTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAA-GGAGAA-CAATTCTCACGTAAATAAGTTTTT
* * * *
10299800 AATTCAAGGACCGAAACTTGTTTACAAGAAGACAAACTGTTTTGACAAATTATGCGATTTCCCGA
64 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAATTATGCGATTTCCTGA
*
10299865 GCATGGATTGCTCAAAAAATTGCTCGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAGT
129 GCATGGATTGCTCAAAAAATTGCTAGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAGT
10299930 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCCAAGAA
194 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGT-CCAAGAA
10299980 CTTTTGAACT
Statistics
Matches: 965, Mismatches: 199, Indels: 203
0.71 0.15 0.15
Matches are distributed among these distances:
322 3 0.00
323 7 0.01
324 9 0.01
325 11 0.01
326 14 0.01
327 4 0.00
328 5 0.01
330 4 0.00
331 13 0.01
332 15 0.02
333 8 0.01
334 9 0.01
335 7 0.01
336 21 0.02
337 13 0.01
338 34 0.04
339 168 0.17
340 377 0.39
341 87 0.09
342 8 0.01
343 11 0.01
344 20 0.02
345 13 0.01
346 9 0.01
347 8 0.01
348 15 0.02
349 14 0.01
350 4 0.00
352 5 0.01
353 4 0.00
354 15 0.02
355 10 0.01
356 10 0.01
357 7 0.01
358 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (337 bp):
TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGAACAATTCTCACGTAAATAAGTTTTTAA
TTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAATTATGCGATTTCCTGAGC
ATGGATTGCTCAAAAAATTGCTAGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAGTTA
TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTC
TCACGTAAATAAGTTTTTGACAAGTTAGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCA
CGTAAATAAGTT
Found at i:10299459 original size:464 final size:463
Alignment explanation
Indices: 10298591--10299459 Score: 1189
Period size: 464 Copynumber: 1.9 Consensus size: 463
10298581 ATCGTAAAAG
*
10298591 TTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10298656 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTGAC
66 GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
* * *
10298721 AAGTTTGAAAGTTCATCCAAGAACCAATGGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCA
131 AAGTTTGAAAGTTCATCCAAGAACCAA-GGAGAAACAATTCTCACATAAATAAGTTATTAATTCA
* * *
10298786 AGGACCGAAACTTGTTTACAAAAAAGACAAACTATTTTGAAAAATTATGCGATTTCCTGAGCATG
195 AAGACCAAAACTTGTTTACAAAAAAGACAAACTATTTTGAAAAATAATGCGATTTCCTGAGCATG
* *
10298851 GATTGCTCGAAAAATTGCTCGAAAGAATGGATCATCTCGAATGCTTTCAGGAACCGAAGTTATAA
260 GAATGCTCGAAAAATTGCTCGAAAGAATGGATCATCTCGAATGCTTTCAAGAACCGAAGTTATAA
* ** * *
10298916 AAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCA
325 AAGAAATCGTAAAAGTTTGACAAGTTCGAAAATTCGTCCAACAACCAAGAGAGAAACAATTCTCA
10298981 CGTAAATAAGTTTTTGACAAGTTAGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
390 CGTAAATAAGTTTTTGACAAGTTAGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
10299046 AATTAAGTT
455 AATTAAGTT
* *
10299055 TTTGACAAGTTTGGAAGTTCGTCTAAGAA-CTAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAGC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTT
** * *
10299119 TGACAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
65 TGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGA
* * ** * *
10299184 CAAGTTTGGACGTTTGTCCAAGAAACTAA-GAGAAACAATTCTCACATAACTAAGTTATTAATT-
130 CAAGTTTGAAAGTTCATCCAAG-AACCAAGGAGAAACAATTCTCACATAAATAAGTTATTAATTC
* * * * *
10299247 AACAGTCCAAAACTTGTTTGGTC-AAAATGACAAACTATTTTGACCAAATAATGTGATTT-CTCG
194 AA-AGACCAAAACTTGTTT--ACAAAAAAGACAAACTATTTTGA-AAAATAATGCGATTTCCT-G
* * * * * * *
10299310 AGCATGGAATGTTTGGAAATTTGCT-TAAAGGAATGGAT-AGTCTTGAATGCTTT-AAGAAGCCT
254 AGCATGGAATGCTCGAAAAATTGCTCGAAA-GAATGGATCA-TCTCGAATGCTTTCAAGAA-CCG
* * * *
10299372 CAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAATTCGTCCAACAACCAAG-GAGATA
316 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAATTCGTCCAACAACCAAGAGAGAAA
10299436 CAATTCTCACGTAAATAAGTTTTT
381 CAATTCTCACGTAAATAAGTTTTT
10299460 AATTTAAAGG
Statistics
Matches: 352, Mismatches: 43, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
462 2 0.01
463 44 0.12
464 195 0.55
465 111 0.32
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (463 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
AAGTTTGAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACATAAATAAGTTATTAATTCAA
AGACCAAAACTTGTTTACAAAAAAGACAAACTATTTTGAAAAATAATGCGATTTCCTGAGCATGG
AATGCTCGAAAAATTGCTCGAAAGAATGGATCATCTCGAATGCTTTCAAGAACCGAAGTTATAAA
AGAAATCGTAAAAGTTTGACAAGTTCGAAAATTCGTCCAACAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTGACAAGTTAGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
ATTAAGTT
Found at i:10299558 original size:215 final size:217
Alignment explanation
Indices: 10299212--10299675 Score: 564
Period size: 215 Copynumber: 2.1 Consensus size: 217
10299202 CAAGAAACTA
* * * * *
10299212 AGAGAAACAATTCTCACATAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTGTTT-GACAAAATGA
* * ***
10299277 CAAACTATTTTGACCAAATAATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGCTTAAAGGA
65 CAAACTATTTAGACCAAATAATGGGATTTCTCGAGCATGGAATGTTAAAAAATTTGCTTAAAGGA
* * ** * * *
10299342 ATGGA-TAGTCTTGAATGC-TTTAAGAAGCCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAG
130 ATGGATTA-ACTTGAATACATTTAAGAA-CCGAAGTCATAAAAGAAATCGTAAAAGTTTGACAAG
*
10299405 TTCGAAAATTCGTCCAACAACCAAG
193 TTCGAAAATTAGTCCAACAACCAAG
*
10299430 -GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGGCCAAAACTTGTTT-ACAAAATGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGGCCAAAACTTGTTTGACAAAATGA
* *
10299492 CAAACTATTTAGACCAAATGATGGGATTTTTCGAGCATGGAATGTTCAAAAAATTT-C-TAGAAG
65 CAAACTATTTAGACCAAATAATGGGATTTCTCGAGCATGGAATGTT-AAAAAATTTGCTTA-AAG
**
10299555 GAATGGATTAACTTGAATACATTTTGGAACCGAAGTCATAAAAGAAATCGTAAAAGTTTGACAAG
128 GAATGGATTAACTTGAATACATTTAAGAACCGAAGTCATAAAAGAAATCGTAAAAGTTTGACAAG
* ** * *
10299620 TTCGGATGTTAGTCCAAGAAGCAAG
193 TTCGAAAATTAGTCCAACAACCAAG
*
10299645 AGAGAAACAATTCTTACGTAAATAAGTTTTT
1 AGAGAAACAATTCTCACGTAAATAAGTTTTT
10299676 GACAAGTTCG
Statistics
Matches: 210, Mismatches: 30, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
214 2 0.01
215 119 0.57
216 42 0.20
217 43 0.20
218 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (217 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTGTTTGACAAAATGAC
AAACTATTTAGACCAAATAATGGGATTTCTCGAGCATGGAATGTTAAAAAATTTGCTTAAAGGAA
TGGATTAACTTGAATACATTTAAGAACCGAAGTCATAAAAGAAATCGTAAAAGTTTGACAAGTTC
GAAAATTAGTCCAACAACCAAG
Found at i:10299697 original size:62 final size:62
Alignment explanation
Indices: 10299611--10299799 Score: 247
Period size: 62 Copynumber: 3.0 Consensus size: 62
10299601 ATCGTAAAAG
* * * *
10299611 TTTGACAAGTTCGGATGTTAGTCCAAGAAGCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
* * * *
10299673 TTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
* * *
10299735 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATG-GAGAACCAATT-TTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCTT-ACGTAAATAAGTT
10299797 TTT
1 TTT
10299800 AATTCAAGGA
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 1 0.01
62 108 0.98
63 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
Found at i:10300271 original size:62 final size:62
Alignment explanation
Indices: 10300158--10300274 Score: 189
Period size: 62 Copynumber: 1.9 Consensus size: 62
10300148 ATTAACTCAG
* *
10300158 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
* * *
10300220 TTACGTGAGAATTGTTTCTCTCTTGATTCTTGGATGAACATCCGAATTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAA
10300275 CTTTTATGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
Found at i:10300486 original size:277 final size:277
Alignment explanation
Indices: 10299986--10300577 Score: 812
Period size: 277 Copynumber: 2.1 Consensus size: 277
10299976 AGAACTTTTG
* * * * * *
10299986 AACTAGTCAAACTTTCACGAGTTCTTTAATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCAT
1 AACTTGTCAAACTTTTACGATTTCTTT-ATAACTTCGGCTCCTGAAAGTATTCAAGATGATCCAT
* * * *
10300051 TCCTTTGACCAAATTTCCAAACGTTCTATGCTCGAGAAATCACATCATTTGGTCGAAATAGTTTG
65 TCCTTTGACCAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCGAAATAGTTTG
* ** *
10300116 TCATTTTGTAAACAAGTTTTGGACTGTTAATTATTAACTCAGTTACGTGAGAATTGTTTCTCTCT
130 TCATTTTGTAAACAAGTTTTGGACTGTGAATTAAAAACTCAGTTACGTGAGAATTGGTTCTCTCT
* *
10300181 TGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGA
195 TGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGA
* *
10300246 TTCTTGGATGAACATCCG
260 TTCTTGGACGAACATCCA
* *
10300264 AATTTGTCAAACTTTTATGATTTCTTATATAACTTCGGCTCCTGAAAGTATTCAAGATGATCCAT
1 AACTTGTCAAACTTTTACGATTTCTT-TATAACTTCGGCTCCTGAAAGTATTCAAGATGATCCAT
* * * * * *
10300329 T-CTTTCTAGC-AATTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTT
65 TCCTTT-GACCAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCGAAATAGTTT
* * * *
10300392 GTCTTTTTGTAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCT
129 GTCATTTTGTAAACAAGTTTTGG-ACTGTGAATTAAAAACTCAGTTACGTGAGAATTGGTTCTCT
* *
10300456 CTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
193 CTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
*
10300521 GGTTCTTGGACGAACATCCA
258 GATTCTTGGACGAACATCCA
*
10300541 AACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCG
1 AACTTGTCAAACTTTTACGATTTC-TTTATAACTTCG
10300578 TTTCCAGAAA
Statistics
Matches: 275, Mismatches: 35, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
277 212 0.77
278 62 0.23
279 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (277 bp):
AACTTGTCAAACTTTTACGATTTCTTTATAACTTCGGCTCCTGAAAGTATTCAAGATGATCCATT
CCTTTGACCAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCGAAATAGTTTGT
CATTTTGTAAACAAGTTTTGGACTGTGAATTAAAAACTCAGTTACGTGAGAATTGGTTCTCTCTT
GGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGAT
TCTTGGACGAACATCCA
Found at i:10300522 original size:62 final size:62
Alignment explanation
Indices: 10300425--10300551 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10300415 TCCTTGAATT
* * * *
10300425 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
* *
10300487 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
10300549 AAA
1 AAA
10300552 CTTTTAGGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTC
Found at i:10300987 original size:62 final size:62
Alignment explanation
Indices: 10300897--10301137 Score: 410
Period size: 62 Copynumber: 3.9 Consensus size: 62
10300887 AATAACTTGG
* *
10300897 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10300959 TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10301021 TTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10301083 TTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10301138 CTTTTATGAT
Statistics
Matches: 169, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 169 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10301310 original size:402 final size:399
Alignment explanation
Indices: 10300673--10301476 Score: 1154
Period size: 402 Copynumber: 2.0 Consensus size: 399
10300663 TCTTTAAATT
* * * *
10300673 AAAAAGTTATTTACGTGAGAATTGTATCTCCTTGGTTCTCGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTGGGTTCTCGGACGAACATCCAAACTTGTCAAAC
* * *
10300738 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTACAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTATTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
*
10300803 ATTCCAAACATTCCATTCTCGAGAAATCACATCATTTTGTCAAAATAGTTTATCATTTTGTAAAC
131 ATTCCAAACATTCCATGCTCGAGAAATCACATCATTTTGTCAAAATAGTTTATCATTTTGTAAAC
* * ** *
10300868 AAGTTTTGGACTATTAATTAATAACTTGGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
196 AAGTTTTGGACTATGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
** *
10300933 AACTTTCGAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
261 AACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
*
10300998 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTC
326 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT-ACTCTTGGTTCTTGGACGAACATC
10301063 CAAACTTGTC
390 CAAACTTGTC
* * * *
10301073 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTGGGTTCTCGGACGAACATCCAAACTTGTCAAA
* * * *
10301138 CTTTTATGATTTATTTTATAACTATA-GTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
65 CTTTCACGAGTTATTTTATAACT-TAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTT-GAG
* * * * *
10301201 -AAATTTTTCGAACATTCCATGCTC-AGGAAATCACATGA-TTTGATCTAAATAGTTTGT-AGTT
128 CAAA--TTCCAAACATTCCATGCTCGA-GAAATCACATCATTTTG-TCAAAATAGTTTATCA-TT
* *
10301262 TTGTAAACAAGTTTTGGTCCT-TGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGT
188 TTGTAAACAAGTTTTGG-ACTATGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGT
*
10301326 TCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCT
252 TCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCT
*
10301391 TGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGA
317 TGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTACTCTTGGTTCTTGGA
*
10301456 CGAACATCCGAACTTGTC
382 CGAACATCCAAACTTGTC
10301474 AAA
1 AAA
10301477 CTTTTACGAT
Statistics
Matches: 360, Mismatches: 35, Indels: 17
0.87 0.08 0.04
Matches are distributed among these distances:
400 35 0.10
401 116 0.32
402 207 0.57
403 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (399 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTGGGTTCTCGGACGAACATCCAAACTTGTCAAAC
TTTCACGAGTTATTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
ATTCCAAACATTCCATGCTCGAGAAATCACATCATTTTGTCAAAATAGTTTATCATTTTGTAAAC
AAGTTTTGGACTATGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC
TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTACTCTTGGTTCTTGGACGAACATCC
AAACTTGTC
Found at i:10301386 original size:62 final size:62
Alignment explanation
Indices: 10301289--10301476 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
10301279 TCCTTGAATT
* * * *
10301289 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
10301351 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
10301413 AAAAACTTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10301474 AAA
1 AAA
10301477 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 34 0.30
62 80 0.70
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10301631 original size:339 final size:340
Alignment explanation
Indices: 10300949--10301691 Score: 1122
Period size: 339 Copynumber: 2.2 Consensus size: 340
10300939 CGAACTTGTC
* * *
10300949 AAAAACTTATTTA-TGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACT-TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* *
10301013 AAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
65 AAACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAA
*
10301078 CTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* ** * *
10301143 ATGATTTATTTTATAACTATAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTT
195 ACGATTTATTTTATAACTATAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* *
10301208 TCGAACATTCCATGCTCAGGAAATCACATGATTTGATCTAAATAGTTTGTAGTTTTGTAAACAAG
260 TCGAACATTCCATGCTCAGGAAATCACATCATTTGATCTAAATAGTTTGCAGTTTTGTAAACAAG
*
10301273 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTAAATT
*
10301289 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
10301354 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAAC
*
10301419 TTATTTACGTGAGAATTGTTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
10301483 CGATTTCTTTTATAACT-TTGATTCGAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
196 CGATTTATTTTATAACTATAG-TTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* * * *
10301547 TCGAACATTCCATGCT-TGGAAAATCCCATCATTTGGTGTAAATAGTTTGGCA-TTTTGTAAACA
260 TCGAACATTCCATGCTCAGG-AAATCACATCATTTGATCTAAATAGTTT-GCAGTTTTGTAAACA
*
10301610 AGTTTTGGTCTTTAAATT
323 AGTTTTGGTCCTTAAATT
* * *
10301628 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACTTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10301691 A
65 A
10301692 CTTTCACGAG
Statistics
Matches: 367, Mismatches: 31, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
338 38 0.10
339 185 0.50
340 143 0.39
341 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGAATTGTTTCACTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTATTTTATAACTATAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCAGGAAATCACATCATTTGATCTAAATAGTTTGCAGTTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10301794 original size:215 final size:215
Alignment explanation
Indices: 10301413--10301907 Score: 631
Period size: 215 Copynumber: 2.3 Consensus size: 215
10301403 CAAACTTGTC
* *
10301413 AAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * * * * *
10301478 TTTTACGATTTCTTTTATAACTTTGATTCGAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAA
66 TTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
* * * * **
10301543 TTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTGTAAATAGTTTGGCATTTTGTAAA
131 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAAA
* *
10301608 CAAGTTTTGGTCT-TTAAATT
196 CAAGTATTGGACTGTT-AATT
* * *
10301628 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** *
10301692 CTTTCACGAGTGCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
65 CTTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
10301756 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGGCATTTTG
*
10301819 TAAAGAAGTATTGGACTGTTAATT
192 TAAACAAGTATTGGACTGTTAATT
* * * * *
10301843 AATAACTTAGTTATGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10301908 AACTTATTTA
Statistics
Matches: 240, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
214 3 0.01
215 199 0.83
216 38 0.16
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGGCATTTTGTAAA
CAAGTATTGGACTGTTAATT
Found at i:10301944 original size:62 final size:62
Alignment explanation
Indices: 10301846--10302031 Score: 266
Period size: 62 Copynumber: 3.0 Consensus size: 62
10301836 GTTAATTAAT
* * * *
10301846 AACTTAGTTATGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
* * *
10301908 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATT-CTAGCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCCAAACTTGTCAAA
* * *
10301970 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
10302032 CTTTTATGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
61 1 0.01
62 107 0.97
63 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
Found at i:10302176 original size:555 final size:554
Alignment explanation
Indices: 10301073--10302247 Score: 1799
Period size: 554 Copynumber: 2.1 Consensus size: 554
10301063 CAAACTTGTC
* * * *
10301073 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * * *
10301138 CTTTTATGATTTATTTTATAACTATAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAA
65 CTTTCACGAGTGATTTTATAACTATAGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGAA
* * * *
10301203 ATTTTTCGAACATTCCATGCTCAGGAAATCACATGATTTGATCTAAATAGTTTGTAGTTTTGTAA
130 ATTTTCCAAACATTCCATGCTCAGGAAATCACATCATTTGATCAAAATAGTTTGTAGTTTTGTAA
* *
10301268 ACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
195 ACAAGTATTGGTACTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * * *
10301333 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACAA
260 CGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACAA
*
10301398 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTTCTCTTGGTTCTTGGACGAACAT
325 ACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTTCTCTTGGTTCTTGGACGAACAT
*
10301463 CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCGAAAAAGTATTCAAGATAATC
390 CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATC
* *
10301528 CATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTGTAAATAGT
455 CATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGT
10301593 TTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
520 TTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
*
10301628 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
* *
10301693 TTTCACGAGTGCTTTTATAACT-TAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGC
66 TTTCACGAGTGATTTTATAACTATA-GTTCCTGAAAGTATTCAAGACGATCCATT-CTTTCGAG-
*
10301756 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCA-TTTT
128 AAATTTTCCAAACATTCCATGCTCAG-GAAATCACATCATTTGATCAAAATAGTTTGT-AGTTTT
* * * * * *
10301818 GTAAAGAAGTATTGG-ACTGTTAATTAATAACTTAGTTA-TGTGAGAATTGTTTCTCTGTTGGTT
191 GTAAACAAGTATTGGTACT-TGAATTAAAAACTTAATTACT-TGAGAATTGGTTCTCTCTTGGTT
*
10301881 CTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
254 CTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTT
** * *
10301946 GGATGAACATT-CTAGCTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
319 GGACAAAC-TTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTT-TCTCTTGGTTCTTGG
* *
10302010 ATGAACATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCA
382 ACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCA
*
10302075 AGATAATCCATTCCTTTTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTC
447 AGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTC
*
10302140 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
512 TAAATAGTTTGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* *
10302183 AAAAACTTATATACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTTGAACTTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTCGAAC-TTGTCAAA
10302248 AACTTATTTA
Statistics
Matches: 565, Mismatches: 45, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
553 6 0.01
554 278 0.49
555 273 0.48
556 8 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
TTTCACGAGTGATTTTATAACTATAGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGAAA
TTTTCCAAACATTCCATGCTCAGGAAATCACATCATTTGATCAAAATAGTTTGTAGTTTTGTAAA
CAAGTATTGGTACTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACAAA
CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTTCTCTTGGTTCTTGGACGAACATC
CGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCC
ATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTT
TGGCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:10302286 original size:340 final size:339
Alignment explanation
Indices: 10301628--10302295 Score: 941
Period size: 340 Copynumber: 2.0 Consensus size: 339
10301618 TCTTTAAATT
* * * *
10301628 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
* ** *
10301693 TTTCACGAGTGCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTTGAGCAA
10301758 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* * * * *
10301823 GAAGTATTGGACTGTTAATTAATAACTTAGTTATGTGAGAATTGTTTCTCTGTTGGTTCTTGGAC
196 CAAGTATTGGACTGTTAATTAAAAACTTAGTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAC
* *
10301888 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAA
261 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGAGTTCTTGGACGAA
10301953 CATTCTAGCTTGTC
326 CATTCTAGCTTGTC
*
10301967 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTC-CTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
* * * * * * *
10302032 CTTTTATGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAG-A
65 CTTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTTGAGCA
* * * *
10302096 AATTTTTCGAACATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 AA-TTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
10302160 AAACAAGTTTTGGTCT-TTAAATTAAAAACTTA-TATACGTGAGAATTGTATCTC-CTTGGTTCT
193 AAACAAGTATTGGACTGTT-AATTAAAAACTTAGT-TACGTGAGAATTGTATCTCTCTTGGTTCT
* *** *
10302222 TGGATGAACTTTTGAACTTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTG
256 TGGACGAACTTCCAAAC-TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGAGTTCTTG
10302287 GACGAACAT
320 GACGAACAT
10302296 CCAAACTTCT
Statistics
Matches: 289, Mismatches: 34, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
339 56 0.19
340 233 0.81
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
TTTCACGAGTGCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTATTGGACTGTTAATTAAAAACTTAGTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTGAGTTCTTGGACGAA
CATTCTAGCTTGTC
Found at i:10302309 original size:62 final size:62
Alignment explanation
Indices: 10302183--10302309 Score: 157
Period size: 62 Copynumber: 2.0 Consensus size: 62
10302173 TCTTTAAATT
* * * *** *
10302183 AAAAACTTATATACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTTGAACTTTGTC
1 AAAAACTTATATACGTGAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCAAACTTTCTC
* *
10302245 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAAC-TTCTC
1 AAAAACTTATATACGTGAGAATTGTATCTC-CTGGGTTCTTGGACGAACATCCAAACTTTCTC
10302307 AAA
1 AAA
10302310 CTTTTATGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 35 0.64
63 20 0.36
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (62 bp):
AAAAACTTATATACGTGAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCAAACTTTCTC
Found at i:10302422 original size:278 final size:276
Alignment explanation
Indices: 10301905--10302567 Score: 913
Period size: 278 Copynumber: 2.4 Consensus size: 276
10301895 CAAACTTGTC
* * * *
10301905 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACATTCTAGCTTGTCAAA
1 AAAAACTTATATACGTGAGAATTG-TTCTCTCTTGGTTCTTGGATGAAC-TTTTAACTTGTCAAA
* * * *
10301970 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTT
64 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCAAACTT
* * * *
10302035 TTATGATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGAAATT
129 TTATGATTTATTTTATAACTTAGATTCCAAAAAGTATTCAACATAATCCATTCCTTTGAGAAATT
* * * *
10302100 TTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
194 TTTCAAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACA
*
10302165 AGTTTTGGTCTTTAAATT
259 AGTTTTGGTCCTTAAATT
10302183 AAAAACTTATATACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTTGAACTTTGTCAA
1 AAAAACTTATATACGTGAGAATTGT-TCTCTCTTGGTTCTTGGATGAACTTTT-AAC-TTGTCAA
*
10302247 AAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAACT
63 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCAAACT
** *
10302312 TTTATGATTTATTTTATAACTTCAG-TTCCTGAAAGTATTCAACATGATCCATT-CTTTCGAGAA
128 TTTATGATTTATTTTATAACTT-AGATTCCAAAAAGTATTCAACATAATCCATTCCTTT-GAGAA
* *
10302375 ATTTTTCAAACATTCCATGCTCAGG-AAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTA
191 ATTTTTCAAACATTCCATGCTC-GGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTA
* *
10302439 AACAAGTTTTGGTCCTTGAGTT
255 AACAAGTTTTGGTCCTTAAATT
* * *
10302461 AAAAACTTA-ATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
1 AAAAACTTATA-TACGTGAGAATT-GTTCTCTCTTGGTTCTTGGATGAACTTT-TAACTTGTCAA
** *
10302525 AAACTTATTTACAAGAGTATTGTTTCTCTCTTGGTTCTTGGAC
63 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
10302568 AAACTTTCGA
Statistics
Matches: 343, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
276 3 0.01
277 25 0.07
278 287 0.84
279 28 0.08
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (276 bp):
AAAAACTTATATACGTGAGAATTGTTCTCTCTTGGTTCTTGGATGAACTTTTAACTTGTCAAAAA
CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCAAACTTTT
ATGATTTATTTTATAACTTAGATTCCAAAAAGTATTCAACATAATCCATTCCTTTGAGAAATTTT
TCAAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCCTTAAATT
Found at i:10302482 original size:618 final size:613
Alignment explanation
Indices: 10301628--10302861 Score: 1701
Period size: 618 Copynumber: 2.0 Consensus size: 613
10301618 TCTTTAAATT
* * * * * * *
10301628 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCAAACTTCTCAAAC
* * *
10301693 TTTCACGAGTGCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTGATTTTATAACTTAGGTTCCTGAAAGTATTCAACACGATCCATTCCTTTGAGCAA
* *
10301758 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAAA
* * * * * *
10301823 GAAGTATTGGACTGTTAATTAATAACTTAGTTATGTGAGAATTGTTTCTCTGTTGGTTCTTGGAC
196 CAAGTATTGGACTGTGAATTAAAAACTTAATTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
** **
10301888 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAA
261 GAACTTCCAAACTTGTCAAAAACTTATTTACAAGAGAATTGTTTCTCTCTTAGTTCTTGGACAAA
* * *
10301953 CATTCTAGCTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACAT
326 CATTCGAACTTGCCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACAT
* * *
10302018 CCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTTGATTCCA-AAAAGTATTCAAGATAAT
391 CCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATT-CATAAAAGTATTCAAGATAAT
* * *
10302082 CCATTCCTTT-TAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATA
455 CCATT-CTTTCGAGAAA-TTTTCGAACATTCCATGCTCGGAAAATCCCATAATTTAGTCTAAATA
*
10302146 GTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATATACGTGAGAATTGTATC
518 GTTTGTC-TTTTCTAAACAAGTTTTGGTCTTTAAATT-AAAACTTATATACGTGAGAATTGTATC
*
10302211 TCCTTGGTTCTTGGATGAACTTTTGAACTTTGTC
581 TCCTTGGTTCTTGGATGAACTTTCGAAC-TTGTC
*
10302245 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTGGGTTCTTGGACGAACATCCAAACTTCTCAAA
* * * * *
10302310 CTTTTATGATTTATTTTATAACTTCA-GTTCCTGAAAGTATTCAACATGATCCATT-CTTTCGAG
65 CTTTCACGAGTGATTTTATAACTT-AGGTTCCTGAAAGTATTCAACACGATCCATTCCTTT-GAG
* * * *
10302373 -AAATTTTTCAAACATTCCATGCTC-AGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTT
128 CAAA-TTTCCAAACATTCCATGCTCGA-GAAATCACATAATTTGATCAAAATAGTTTGTCATTTT
* * *
10302436 GTAAACAAGTTTTGGTCCT-TGAGTTAAAAACTTAATTACT-TGAGAATTGGTTCTCTCTTGGTT
191 GTAAACAAGTATTGG-ACTGTGAATTAAAAACTTAATTA-TGTGAGAATTGGTTCTCTCTTGGTT
* * *
10302499 CTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACAAGAGTATTGTTTCTCTCTTGGTTCTT
254 CTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACAAGAGAATTGTTTCTCTCTTAGTTCTT
* *
10302564 GGACAAACTTTCGAACTTGCCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTTTGGA
319 GGACAAACATTCGAACTTGCCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
10302629 TGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAA
384 TGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCATAAAAGTATTCAA
* * * ** *
10302694 GATGATCCATTCTTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCGTATAATTTAGTCTT
449 GATAATCCATTCTTTCGAGAAATTTTCGAACATTCCATGCTCGGAAAATCCCATAATTTAGTCTA
* * * *
10302759 AATATTTTGTCTTTTCTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTA
514 AATAGTTTGTCTTTTCTAAACAAGTTTTGGTCTTTAAATTAAAACTTATATACGTGAGAATTGTA
* * *
10302824 TTTCCTTGGTTGTTGGATGAACTTTCGAGCTTGTC
579 TCTCCTTGGTTCTTGGATGAACTTTCGAACTTGTC
10302859 AAA
1 AAA
10302862 CTTTCTCGAG
Statistics
Matches: 542, Mismatches: 66, Indels: 21
0.86 0.10 0.03
Matches are distributed among these distances:
614 8 0.01
615 50 0.09
616 26 0.05
617 90 0.17
618 364 0.67
619 4 0.01
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (613 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCAAACTTCTCAAAC
TTTCACGAGTGATTTTATAACTTAGGTTCCTGAAAGTATTCAACACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAAA
CAAGTATTGGACTGTGAATTAAAAACTTAATTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACAAGAGAATTGTTTCTCTCTTAGTTCTTGGACAAA
CATTCGAACTTGCCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACAT
CCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCATAAAAGTATTCAAGATAATC
CATTCTTTCGAGAAATTTTCGAACATTCCATGCTCGGAAAATCCCATAATTTAGTCTAAATAGTT
TGTCTTTTCTAAACAAGTTTTGGTCTTTAAATTAAAACTTATATACGTGAGAATTGTATCTCCTT
GGTTCTTGGATGAACTTTCGAACTTGTC
Found at i:10302558 original size:62 final size:61
Alignment explanation
Indices: 10302461--10302649 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 61
10302451 TCCTTGAGTT
* ** *
10302461 AAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACAAGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * *
10302523 AAAAACTTATTTACAAGAGTATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGCC
1 AAAAACTTATTTACAAGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * *
10302585 AAAAACTTATTTACGTAAGA-ATTGTTTCTCTCTTGGTTTTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTAC--AAGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
10302647 AAA
1 AAA
10302650 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
62 106 0.96
64 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACAAGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
Found at i:10303123 original size:60 final size:62
Alignment explanation
Indices: 10303016--10303255 Score: 319
Period size: 62 Copynumber: 3.9 Consensus size: 62
10303006 GTTAATTAAT
* * *
10303016 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10303078 AACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTGAACGAACTTCC-ACACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTCAAA
* * *
10303138 AACTTATTTACGTGAGAATT-TTTACTCTCTTGCTTCTTGGACTAACATT-CGAACTTGTGAAA
1 AACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAA
* * *
10303200 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10303256 CTGAAACTTT
Statistics
Matches: 155, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 54 0.35
61 2 0.01
62 92 0.59
63 6 0.04
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10303264 original size:122 final size:122
Alignment explanation
Indices: 10303016--10303248 Score: 328
Period size: 122 Copynumber: 1.9 Consensus size: 122
10303006 GTTAATTAAT
10303016 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
*
10303081 TTATTTACGTGAGAATTGCTTCTCTTGGTTCTTGAACGAACTTCCACACTTGTCAAA
66 TTATTTACGTGAGAATTGCTTCTCTTGGTTCTTGAACGAACATCCACACTTGTCAAA
* * * *
10303138 AACTTATTTACGTGAGAATT-TTTACTCTCTT-GCTTCTTGGACTAACATT-CGAACTTGTGAAA
1 AACTTAGTTACATGAGAATTGTTT-CTCTCTTAG-TTCTTGGACGAAC-TTCCGAACTTGTCAAA
* * *
10303200 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
63 AACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTGAACGAACATC
10303249 TGAACTTCTG
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
121 4 0.04
122 69 0.70
123 3 0.03
124 22 0.22
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (122 bp):
AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGCTTCTCTTGGTTCTTGAACGAACATCCACACTTGTCAAA
Found at i:10303508 original size:62 final size:61
Alignment explanation
Indices: 10303442--10303600 Score: 176
Period size: 62 Copynumber: 2.6 Consensus size: 61
10303432 AATTGGTTCT
* * * * * *
10303442 CTCTTGGCTCCTGGACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCA
* * * *
10303504 CTCTTGGTTCTTTGACGAACTTCTGAACTTGTCAAAAAATTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCA
* *
10303566 CCCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10303601 TTTTACGATT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
61 17 0.21
62 65 0.79
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.36
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCA
Found at i:10303713 original size:338 final size:339
Alignment explanation
Indices: 10303075--10303815 Score: 942
Period size: 338 Copynumber: 2.2 Consensus size: 339
10303065 CGAACTTGTC
* * *
10303075 AAAAACTTATTTACGTGAGAATTGCT-TCTCTTGGTTCTTGAACGAAC-TTCCACACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGA-ACTTGTCAAA
* * * * * * **
10303138 AACTTATTTACGTGAGAATTTTTACTCTCTTGCTTCTTGGACTAACATTCGAACTTGTGAAAATC
65 CACTTATTTACATGAGAATGTTTACACTCTTGCTTCTTGGACGAACATTCGAACTTGTCAAAAAA
* * * *
10303203 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
* ** * * *
10303268 CGATTTCTTTTATGACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACAAATTTTT
* * * * * *
10303333 TGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGT
260 CGAACATCCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10303398 TTCGGTCC-TTGAATT
325 TTCGG-CCTTTAAATT
* * *
10303413 AAAAATTTATTTACGTG-GCAATTGGTTCTCTCTTGGCTCCTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
10303477 ACACTTATTTACATGAGTACTGTTT-CACTCTTGGTTCTTTGACGAAC-TTCTGAACTTGTCAAA
64 ACACTTATTTACATGAG-AATGTTTACACTCTTGCTTCTTGGACGAACATTC-GAACTTGTCAAA
*
10303540 AAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAA-TT
127 AAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTT
* * * *
10303603 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATT
192 TTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACAAATT
* * *
10303668 TTTCGAACATTCCATGCTTAGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
257 TTTCGAACATCCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
10303733 AGTTTTGGCCTTTAAATT
322 AGTTTCGGCCTTTAAATT
* * *
10303751 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGGACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10303815 C
65 C
10303816 TTTCACGAGT
Statistics
Matches: 345, Mismatches: 49, Indels: 19
0.84 0.12 0.05
Matches are distributed among these distances:
337 35 0.10
338 170 0.49
339 21 0.06
340 110 0.32
341 9 0.03
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
ACTTATTTACATGAGAATGTTTACACTCTTGCTTCTTGGACGAACATTCGAACTTGTCAAAAAAT
TATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATTCCTTCGACAAATTTTTC
GAACATCCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TCGGCCTTTAAATT
Found at i:10303917 original size:215 final size:214
Alignment explanation
Indices: 10303537--10304027 Score: 609
Period size: 215 Copynumber: 2.3 Consensus size: 214
10303527 TGAACTTGTC
* *
10303537 AAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGAC-GACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCT-CCTTGGTTCTTGGACGGACTTCCGAACTTGTCAAA
* * * * *
10303601 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAA
* * * * * *
10303666 TTTTTCGAACATTCCATGCTTAGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 TTTTCCAAACATTCCATGCTGAGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAA
* *
10303731 CAAGTTTTGGCCTTTAAATT
195 CAAGTTTTGGACTGTAAATT
* * * *
10303751 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGGACTTACGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCCTTGGTTCTTGGACGGACTTCCGAACTTGTCAAA-
** *
10303816 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTT-TGAGCA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCT-AG-A
*
10303880 AA-TTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTTGTCAAAATAGTTTGCCATTTTGT
128 AATTTTCCAAACATTCCATGCT-GAGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGT
*
10303943 AAACAAGTTTTGGACTGTGAATT
192 AAACAAGTTTTGGACTGTAAATT
** * * * *
10303966 ---AACTTAGCTACGTTAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTC-CTTGGTTCTTGGACGGACTTCCGAACTTGTCAAA
10304028 AACTTATTTA
Statistics
Matches: 238, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
212 23 0.10
213 43 0.18
214 44 0.18
215 123 0.52
216 5 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCCTTGGTTCTTGGACGGACTTCCGAACTTGTCAAAT
TTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTGAGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAAC
AAGTTTTGGACTGTAAATT
Found at i:10304063 original size:62 final size:62
Alignment explanation
Indices: 10303974--10304145 Score: 299
Period size: 62 Copynumber: 2.8 Consensus size: 62
10303964 TTAACTTAGC
*
10303974 TACGTTAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
1 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
*
10304036 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATT
1 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
* * *
10304098 TACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTT
10304146 CTGAAACTTT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 104 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
Found at i:10304066 original size:952 final size:951
Alignment explanation
Indices: 10302183--10304151 Score: 2882
Period size: 952 Copynumber: 2.1 Consensus size: 951
10302173 TCTTTAAATT
* * * * *
10302183 AAAAACTTATATACGTGAGAA-TTGTA-TCTCCTTGGTTCTTGGA-TGAACTTTTGAACTTTGTC
1 AAAAACTTATTTACGTGAGAATTTTTACTCT-CTTGGTTCTTGGACT-AACATTCGAAC-TTGTG
10302245 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAA
63 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAA
* * *
10302310 CTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAACATGATCCATTCTTTCGAGAA
128 CTTTTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAACATGATCCATTCTTTCGACAA
*
10302375 ATTTTTCAAACATTCCATGCTCAGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTAA
193 ATTTTTCAAACATCCCATGCTCAGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTAA
* * * * *
10302440 ACAAGTTTTGGTCCTTGAGTTAAAAACTTAATTACTTGAGAATTGGTTCTCTCTTGGTTCTTGGA
258 ACAAGTTTCGGTCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGCTCCTGGA
* *
10302505 CGAACTTTCAAACTTGTCAAAAACTTATTTACAAGAGTATTGTTTCTCTCTTGGTTCTTGGACAA
323 CGAACTTTCAAACTTGTCAAAAACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACAA
* * * *
10302570 ACTTTCGAACTTGCCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTTTTGGATGAACA
388 ACTTTCGAACTTGCCAAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACA
* *
10302635 TCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATGAAAGTATTCAAGATGAT
453 TCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATAAAAGTATTCAAGATAAT
* * * * ** * *
10302700 CCATTCTTTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCGTATAATTTAGTCTTAATATT
518 CCATTCCTTCGAGAAATTTTCGAACATTCCATGCTCAGAAAATCCCATAATTTAGTCTAAATAGT
* * * *
10302765 TTGTCTTTTCTAAACCAGTTTTGGTCTTTCAATTAAAACTTATTTACGTGAGAATTGTATTTCCT
583 TTGTCTTTTCTAAACAAGTTTTGGCCTTTAAATTAAAACTTATTTACGTGAGAATTGTATCTCCT
* * * *
10302830 TGGTTGTTGGATGAACTTTCGAGCTTGTCAAACTTTCTCGAGTTCTTTTATAACTTAGGTTCCTT
648 TGGTTGTTGGACGAACTTACGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTT
10302895 AAAGAATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATAACA
713 AAAGAATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATAACA
* * *
10302960 TCATTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGTTAATTAATAACTTAGTT
778 TCATTTGGTCAAAATAGTTTGCCATTTTGAAAACAAGTTTTGGACTGTGAATT-ATAACTTAGCT
*
10303025 ACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACG
842 ACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* *
10303090 TGAGAATTGCTTCTCTTGGTTCTTGAACGAACTTCCACACTTGTC
907 TGAGAATTGCTTCTCTTAGTTCTTGAACGAACTTCCAAACTTGTC
*
10303135 AAAAACTTATTTACGTGAGAATTTTTACTCTCTTGCTTCTTGGACTAACATTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTTTTACTCTCTTGGTTCTTGGACTAACATTCGAACTTGTGAAA
* * ** *
10303200 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAACTT
* * * * *
10303265 TTACGATTTCTTTTATGACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATT
131 TTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAACATGATCCATTCTTTCGACAAATT
** * * * *
10303330 TTTTGAACATCCCATGCTCGGGAAATC-GCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAT
196 TTTCAAACATCCCATGCTCAGGAAATCAG-ATAATTTGATCTAAATAGTTTGTCGTTTTGTAAAC
* *
10303394 AAGTTTCGGTCCTTGAATTAAAAATTTATTTACGTG-GCAATTGGTTCTCTCTTGGCTCCTGGAC
260 AAGTTTCGGTCCTTGAATTAAAAACTTAATTACGTGAG-AATTGGTTCTCTCTTGGCTCCTGGAC
* * * * *
10303458 GAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAA
324 GAACTTTCAAACTTGTCAAAAACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACAAA
*
10303523 C-TTCTGAACTTGTCAAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACG-ACA
389 CTTTC-GAACTTGCCAAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACA
* *
10303586 TCCGAACTTGTCAAA-TTTTACGATTTCTTTTATAACTTCGGTTCCA-AAAAGTATTCAAGTTAA
453 TCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTT-CATAAAAGTATTCAAGATAA
* * * *
10303649 TCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTAGAAAATCCCATCATTTGGTCTAAATA
517 TCCATTCCTTCGAGAAA-TTTTCGAACATTCCATGCTCAGAAAATCCCATAATTTAGTCTAAATA
*
10303714 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATC
581 GTTTGTC-TTTTCTAAACAAGTTTTGGCCTTTAAATT-AAAACTTATTTACGTGAGAATTGTATC
*
10303779 TCCTTGGTTGTTGGACGGACTTACGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTT
644 TCCTTGGTTGTTGGACGAACTTACGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTT
* * * *
10303844 CCTTAAAGCATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAAT
709 CCTTAAAGAATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAAT
* * *
10303909 CACATCATTTTGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTGAA-T-TAACTTA
774 AACATCATTTGGTCAAAATAGTTTGCCATTTTGAAAACAAGTTTTGGACTGTGAATTATAACTTA
* *
10303972 GCTACGTTAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
839 GCTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
* * *
10304037 ACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTC
904 ACGTGAGAATTG-CT-TCTCTTAGTTCTTGAACGAACTTCCAAACTTGTC
* * * * *
10304087 AAAAACTTATTTACGTGGGAATTGTTT-CTCTCTTGGTTCTTGGACGAACATCCAAACTTCTGAA
1 AAAAACTTATTTACGTGAGAATT-TTTACTCTCTTGGTTCTTGGACTAACATTCGAACTTGTGAA
10304151 A
65 A
10304152 CTTTTACGAT
Statistics
Matches: 909, Mismatches: 95, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
950 136 0.15
951 70 0.08
952 474 0.52
953 225 0.25
954 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (951 bp):
AAAAACTTATTTACGTGAGAATTTTTACTCTCTTGGTTCTTGGACTAACATTCGAACTTGTGAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCAAACTTCTCAAACTT
TTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATCCAACATGATCCATTCTTTCGACAAATT
TTTCAAACATCCCATGCTCAGGAAATCAGATAATTTGATCTAAATAGTTTGTCGTTTTGTAAACA
AGTTTCGGTCCTTGAATTAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGCTCCTGGACGA
ACTTTCAAACTTGTCAAAAACTTATTTACAAGAGTACTGTTTCACTCTTGGTTCTTGGACAAACT
TTCGAACTTGCCAAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGAACATCC
AAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCATAAAAGTATTCAAGATAATCCA
TTCCTTCGAGAAATTTTCGAACATTCCATGCTCAGAAAATCCCATAATTTAGTCTAAATAGTTTG
TCTTTTCTAAACAAGTTTTGGCCTTTAAATTAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
TTGTTGGACGAACTTACGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
GAATTCAAGACGATCCATTCCTTTAAGCAAATTTCCAAACATTCCACGCTCGAGAAATAACATCA
TTTGGTCAAAATAGTTTGCCATTTTGAAAACAAGTTTTGGACTGTGAATTATAACTTAGCTACAT
GAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAG
AATTGCTTCTCTTAGTTCTTGAACGAACTTCCAAACTTGTC
Found at i:10304375 original size:62 final size:60
Alignment explanation
Indices: 10304302--10304489 Score: 164
Period size: 62 Copynumber: 3.0 Consensus size: 60
10304292 TCCTTGAATT
* * * *
10304302 AAAAACTTATTTACCTGGCAATTGGTTCTCTCTTGGTTCTTGGACTAAGTTTCAAACTAGTC
1 AAAAACTTATTTACATGG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
* * * * * *
10304364 AAAGACTTATTTACATGAGTACTAT-TTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACATG-G-AAT-TGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
* * * * *
10304426 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTC
1 AAAAACTTATTTACAT-GGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
10304487 AAA
1 AAA
10304490 CTTTTACGAT
Statistics
Matches: 103, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
60 1 0.01
61 19 0.18
62 79 0.77
63 3 0.03
64 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACATGGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
Found at i:10304453 original size:339 final size:337
Alignment explanation
Indices: 10303751--10304704 Score: 1127
Period size: 339 Copynumber: 2.8 Consensus size: 337
10303741 CCTTTAAATT
* * * *
10303751 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGGACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-GACATCCGAACTTGTCAAA
* * * * *
10303815 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTT-GAGC
65 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATT-CTTTCGAGC
* * * * *
10303879 AA-ATTTCCAAACATTCC-ATGCTCGAGAAATCACATCATTTTGTCAAAATAGTTTGCCATTTTG
129 AATTTTTCGAAA-A-TCCAATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
* ** * * * *
10303942 TAAACAAGTTTTGGACTGTGAATT---AACTTAGCTACGTTAGAATTGTTTCTCTCTTAGTTCTT
192 TAAACAAGTTTTGGCCT-TGAATTAAAAACTTATTTAC-CTGGAATTGGTTCTCTCTTGGTTCTT
* * * * *
10304004 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
255 GGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAACTATTTCACTCTTAGTTCTTGGA
*
10304069 TGAACTTCCAAACTTGTC
320 CGAACTTCCAAACTTGTC
* * * *
10304087 AAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAA
* * *
10304152 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGATAGTATCCAAGATGATCCATTCTTTCGAGCA
65 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * * * * *
10304217 ATTTTTTGAAAATCCAATGCTCGGGAAATCGCATAATTTGGTCTAACTAGTTTGTC-TGTTCTAA
130 ATTTTTCGAAAATCCAATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10304281 AAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGG-CCTTGAATTAAAAACTTATTTACCTGG-AATTGGTTCTCTCTTGGTTCTTGGA
* * * * * * *
10304346 CTAAGTTTCAAACTAGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTTGACGA
258 CGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAACTATTTCACTCTTAGTTCTTGGACGA
*
10304411 ACTTCCGAACTTGTC
323 ACTTCCAAACTTGTC
*
10304426 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTGTCAAAC
* * * * * *
10304491 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
* * * * * *
10304556 TTTTTCGAACATTCAATGCTCGAAAAATCCCATCATTTGGTATAAATAGTTTTTCATTTTGTAAA
131 TTTTTCGAAAATCCAATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * *
10304621 CAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTGGA
196 CAAGTTTTGGCC-TTGAATTAAAAACTTATTTACCTG-GAATTGGT-TCTCTCTTGGTTCTTGGA
10304684 CGAACTTTCAAACTTGTCAAA
258 CGAACTTTCAAACTTGTCAAA
10304705 CTTTCACGAG
Statistics
Matches: 520, Mismatches: 84, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
336 57 0.11
337 116 0.22
338 159 0.31
339 187 0.36
340 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (337 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
TTTTTCGAAAATCCAATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCTTGAATTAAAAACTTATTTACCTGGAATTGGTTCTCTCTTGGTTCTTGGACGA
ACTTTCAAACTTGTCAAAAACTTATTTACATGAGAACTATTTCACTCTTAGTTCTTGGACGAACT
TCCAAACTTGTC
Found at i:10304807 original size:215 final size:216
Alignment explanation
Indices: 10304426--10304921 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 216
10304416 CGAACTTGTC
* * *
10304426 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10304490 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * * **
10304555 ATTTTTCGAACATTCAATGCTCGAAAAATCCCATCATTTGGT-ATAAATAGTTTTTCATTTTGTA
131 AATATCCGAACATTCAATGCTCGAAAAATCACATCATTTGGTCA-AAATAGTTTGCCATTTTGTA
*
10304619 AACAAGTTTTGGCCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
* * *
10304641 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
** * *
10304705 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGGGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AGA
* * *
10304769 AAATATCC-AGACATTCCATGCTCGAGAAATCACATCATTTTGTCAAAATAGTTTGCCATTTTGT
130 AAATATCCGA-ACATTCAATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGT
*
10304833 AAACAAGTTTTGGAGTGTTAATT
194 AAACAAGTTTTGGACTGTTAATT
* * * * *
10304856 AATAACTTAGTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10304921 C
66 C
10304922 ACTTATTTAC
Statistics
Matches: 240, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
214 16 0.07
215 191 0.80
216 33 0.14
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
AATATCCGAACATTCAATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10304957 original size:62 final size:61
Alignment explanation
Indices: 10304859--10305038 Score: 270
Period size: 62 Copynumber: 2.9 Consensus size: 61
10304849 GTTAATTAAT
* * * *
10304859 AACTTAGTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAATTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
*
10304920 ACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10304982 AATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10305039 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
61 2 0.02
62 106 0.98
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10305293 original size:340 final size:338
Alignment explanation
Indices: 10304641--10305600 Score: 1150
Period size: 340 Copynumber: 2.8 Consensus size: 338
10304631 CCTTTAAATT
* * * * * * *
10304641 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
* * * * * * *
10304705 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTT-AG-A
* ** * * *
10304770 AATATCCAG-ACATTCCATGCTCGAGAAATCACATCATTTTGTCAAAATAGTTTGCCATTTTGTA
129 AATTTTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
10304834 AACAAGTTTTGGAGT-GTTAA-TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCC-TAGTTCT
194 AACAAG-TTTCG-GTCCTTAATTTAA-AACTTATTTACGTGAGAATTGGTTCTC-CCTTGGTTCT
* * * * * *
10304896 TGGACGAACTTCCAAATTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
255 TGGACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGG
*
10304961 ATGAACTTCCAAACTTGTC
320 ACGAACTTCCAAACTTGTC
* *
10304980 AAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
* *
10305045 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATT-CTTTTGACC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTTAGA--
* * * * *
10305109 AATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
129 AATTTTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
10305174 AACAAGTTTCGGTCCTTGAATTTAAAACTTATTTACGTG-GCAATTGGTTCTCCCTTGGTTCTTG
194 AACAAGTTTCGGTCCTT-AATTTAAAACTTATTTACGTGAG-AATTGGTTCTCCCTTGGTTCTTG
* * * * * *
10305238 AACGAACTTTTGAACTAGTCAAAGACTTATTTACATGAGCACTGTTTCACTCTTGGTTCTTTGAC
257 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGAC
*
10305303 GAACTTCCGAACTTGTC
322 GAACTTCCAAACTTGTC
* *
10305320 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
* * *
10305385 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTT-TAGAA
* * * *
10305450 ATTTTTCGATCATTCCATGCTCTGA-AAATCCCATCATTTGGTCTAAATAATTTGTCATTTTGTA
130 ATTTTTAGAACATTCCATGCTC-GAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
10305514 AACAAGTTTTGG-CCTTTAAATTAAAAACTTATTTTCTTGAGAATT-GTATCT-CCTTGGTTATT
194 AACAAGTTTCGGTCC-TT-AATTTAAAACTTATTTACGTGAGAATTGGT-TCTCCCTTGGTTCTT
10305576 GGACGAACTTTCGAACTTGTCAAAC
256 GGACGAACTTTCGAACTTGTCAAAC
10305601 TTTCACGAGT
Statistics
Matches: 533, Mismatches: 73, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
337 1 0.00
338 3 0.01
339 80 0.15
340 436 0.82
341 10 0.02
342 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTTAGAAA
TTTTTAGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTCGGTCCTTAATTTAAAACTTATTTACGTGAGAATTGGTTCTCCCTTGGTTCTTGGACG
AACTTTCGAACTTGTCAAACACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTC
Found at i:10305378 original size:62 final size:61
Alignment explanation
Indices: 10305197--10305378 Score: 202
Period size: 62 Copynumber: 2.9 Consensus size: 61
10305187 CCTTGAATTT
* * * * ** *
10305197 AAAACTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAACTAGTCA
1 AAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* * * * * *
10305259 AAGACTTATTTACATGAGCACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTGTCA
1 AAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
* *
10305321 AAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
10305379 CTGAAACTTT
Statistics
Matches: 97, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
62 96 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (61 bp):
AAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
Found at i:10305692 original size:895 final size:894
Alignment explanation
Indices: 10303078--10306748 Score: 6182
Period size: 895 Copynumber: 4.1 Consensus size: 894
10303068 ACTTGTCAAA
* * * * *
10303078 AACTTATTTACGTGAGAATTG-CT-TCTCTTGGTTCTTGAACGAACTTCCACACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
10303141 TTATTTACGTGAGAATT-TTTACTCTCTTGCTTCTTGGACT-AACATT-CGAACTTGTGAAAATC
66 TTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGA-TGAAC-TTCCAAACTTGTCAAAAAC
*
10303203 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTA
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTA
*
10303268 CGATTTCTTTTATGACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTT
193 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTT
*
10303333 TGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGT
258 TGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
* * *
10303398 TTCGGTCCTTGAATTAAAAATTTATTTACGTGGCAATTGGTTCTCTCTTGGCTCCTGGACGAACT
323 TTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACT
* * *
10303463 TTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCT
388 TTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCC
* *
10303528 GAACTTGTCAAAAAATTATTTACGTAAGAATTGTTTCTCCCTTGGTTCTTGGACGACATCCGAAC
453 GAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAAC
10303593 TTGTCAAA-TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
518 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCC
10303657 TTCTAGAAATTTTTCGAACATTCCATGCT-TAGAAAATCCCATCATTTGGTCTAAATAGTTTGTC
583 TTCTAGAAATTTTTCGAACATTCCATGCTCT-GAAAATCCCATCATTTGGTCTAAATAGTTTGTC
10303721 ATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
647 ATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGG
* *
10303786 TTGTTGGACGGACTTACGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
712 TTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA
* *
10303851 GCATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCA
777 GCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCA
* * *
10303916 TTTTGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGACTGTGAA-T--T
842 TTTGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* *
10303966 AACTTAGCTACGTTAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10304031 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
* *
10304096 TTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
* *
10304161 TTTCTTTTATAACTTCGGTTCCTGATAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTTTGA
* * * * * *
10304226 AAATCCAATGCTCGGGAAATCGCATAATTTGGTCTAACTAGTTTGTC-TGTTCTAAAAAAGTTTC
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* * *
10304290 GGTCCTTGAATTAAAAACTTATTTACCTGGCAATTGGTTCTCTCTTGGTTCTTGGACTAAGTTTC
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
* *
10304355 AAACTAGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTTGACGAACTTCCGAA
391 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
10304420 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTG
456 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTG
10304485 TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTC
521 TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTC
* * *
10304550 TAGAAATTTTTCGAACATTCAATGCTC-GAAAAATCCCATCATTTGGTATAAATAGTTTTTCATT
586 TAGAAATTTTTCGAACATTCCATGCTCTG-AAAATCCCATCATTTGGTCTAAATAGTTTGTCATT
10304614 TTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTG
650 TTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTG
*
10304679 TTGGACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCA
715 TTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCA
* * *
10304744 TTCAAGACGATCCATTCCTTTGGGAAAATATCCAGACATTCCATGCTCGAGAAATCACATCATTT
780 TTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
* * *
10304809 TGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTTGGAGTGTTAATTAAT
845 GGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* * *
10304859 AACTTAGTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGACGAACTTCCAAATTTGTCAAACAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10304924 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAATCTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
*
10304989 TGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
* *
10305054 TTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTTGACCAATTTTTTGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTTTGA
*
10305119 ACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
* * * *
10305184 GGTCCTTGAATTTAAAACTTATTTACGTGGCAATTGGTTCTCCCTTGGTTCTTGAACGAACTTTT
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
*
10305249 GAACTAGTCAAAGACTTATTTACATGAGCACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
391 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
*
10305314 CTTGTCAAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
456 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTT
* *
10305379 CTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTT
520 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTT
* *
10305444 CTAGAAATTTTTCGATCATTCCATGCTCTGAAAATCCCATCATTTGGTCTAAATAATTTGTCATT
585 CTAGAAATTTTTCGAACATTCCATGCTCTGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATT
* * *
10305509 TTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTTCTTGAGAATTGTATCTCCTTGGTTA
650 TTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTG
*
10305574 TTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCA
715 TTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCA
*
10305639 TTCAAGACGATCCATTCCTTTGGGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
780 TTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
* **
10305704 GGTCAAAATAATTTGCCATTTTGTAAACCAGTTTTGGTTTGTTAATTAAT
845 GGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
*
10305754 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10305819 TTATTTACGTGGGTACTGTTTCTCTGTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
* *
10305884 TTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
*
10305949 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGA
196 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTTTGA
*
10306014 ACATCCCGTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
261 ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
*
10306079 GGTCTTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
326 GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
* * *
10306144 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCTGAA
391 GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
10306209 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
456 CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTT
*
10306274 GTCAAAATTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGGT-TTCAAGTTAATCCATTCCT
520 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAA-GTATTCAAGTTAATCCATTCCT
* * *
10306338 TATAGAAATTTTTCGAACATT-CAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
584 TCTAGAAATTTTTCGAACATTCCATGCTCTGAAAATCCCATCATTTGGTCTAAATAGTTTGTCAT
10306402 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
649 TTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
* * *
10306467 GTTGGATGAACTTTCGAACTTGTCAAACTTTCACGAGTTTTTTTATAAGTTAGGTTCCTTAAAGC
714 GTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGC
* **
10306532 ATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACAACCCATGCTCGAGAAATCACATCATT
779 ATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATT
10306597 TGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
844 TGGTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
* *
10306648 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGAT
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10306713 TTATTTACGTGAGTACTGTTTCTATCTTGGTTCTTG
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
10306749 TGTCATGGGT
Statistics
Matches: 2616, Mismatches: 152, Indels: 24
0.94 0.05 0.01
Matches are distributed among these distances:
888 18 0.01
889 206 0.08
890 603 0.23
891 4 0.00
893 290 0.11
894 556 0.21
895 936 0.36
896 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (894 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAACTTTTACGA
TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAATTTTTTGA
ACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
GGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
GAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAA
CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTC
TAGAAATTTTTCGAACATTCCATGCTCTGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGT
TGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCAT
TCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTG
GTCAAAATAATTTGCCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
Found at i:10305726 original size:215 final size:216
Alignment explanation
Indices: 10305320--10305815 Score: 613
Period size: 215 Copynumber: 2.3 Consensus size: 216
10305310 CGAACTTGTC
* * * * * *
10305320 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * **
10305385 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10305450 ATTTTTCGATCATTCCATGCTCTGAAAATCCCATCATTTGGTCTAAATAATTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCTGAAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAA
10305515 ACAAGTTTTGGCCTT-TAAATT
196 ACAAGTTTTGG-CTTGTAAATT
* * * * * *
10305536 AAAAACTTATTTTCTTGAGAATTGTATCTC-CTTGGTTATTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** * *
10305600 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGGGA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AGA
10305664 AAATTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGT
130 AAATTTCCAAACATTCCATGCTCTGA-AAATCACATCATTTGGTCAAAATAATTTGCCATTTTGT
* * *
10305728 AAACCAGTTTTGGTTTGTTAATT
194 AAACAAGTTTTGGCTTGTAAATT
* * *
10305751 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10305816 GACTTATTTA
Statistics
Matches: 236, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
214 5 0.02
215 176 0.75
216 55 0.23
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
AATTTCCAAACATTCCATGCTCTGAAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAA
ACAAGTTTTGGCTTGTAAATT
Found at i:10305852 original size:62 final size:62
Alignment explanation
Indices: 10305754--10305933 Score: 261
Period size: 62 Copynumber: 2.9 Consensus size: 62
10305744 GTTAATTAAT
* *
10305754 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10305816 GACTTATTTACGTGGGTACTGTTTCTCTGTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10305878 AACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10305934 CTGAAACTTT
Statistics
Matches: 102, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 102 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Done.