Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 49 of 144
Found at i:10306186 original size:62 final size:61
Alignment explanation
Indices: 10306120--10306280 Score: 214
Period size: 62 Copynumber: 2.6 Consensus size: 61
10306110 AATTGGTTCT
* * * *
10306120 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10306182 CTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
10306244 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAA
10306281 TTTTACGATT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
61 3 0.03
62 82 0.94
63 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.37
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10306191 original size:340 final size:338
Alignment explanation
Indices: 10305536--10306493 Score: 1219
Period size: 340 Copynumber: 2.8 Consensus size: 338
10305526 CCTTTAAATT
* * * * * * *
10305536 AAAAACTTATTTTCTTGAGAATTGTATCTC-CTTGGTTATTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * * *
10305600 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGGGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATT-CTTTGAGAA
* * * * * * *
10305665 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAA
130 ATTTTTCGAACA-TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
10305730 ACCAGTTTTGGT-TTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
194 ACAAGTTTTGGTCTT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGG
* * * * * *
10305794 ACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGGGTACTGTTTCTCTGTTGGTTCTTGGACG
258 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
10305859 AACTTCCAAACTTGTC
323 AACTTCCAAACTTGTC
* * *
10305875 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTGAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10305940 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTT-GAGAA
* * * * *
10306005 ATTTTTTGAACATCCCGTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
130 ATTTTTCGAACAT-CCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10306070 ACAAGTTTCGGTCTTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGG
194 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGG
* *
10306134 ACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATG
258 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
**
10306199 AACTTCTGAACTTGTC
323 AACTTCCAAACTTGTC
10306215 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10306280 ATTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGGT-TTCAAGTTAATCCATTCCTTAT-AG
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAA-GTATTCAAGATGATCCATT-CTT-TGAG
* * * *
10306343 AAATTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
128 AAATTTTTCGAACATCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
10306408 AACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTGTTG
193 AACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTG
*
10306471 GATGAACTTTCGAACTTGTCAAA
257 GACGAACTTTCGAACTTGTCAAA
10306494 CTTTCACGAG
Statistics
Matches: 536, Mismatches: 73, Indels: 21
0.85 0.12 0.03
Matches are distributed among these distances:
338 33 0.06
339 118 0.22
340 377 0.70
341 7 0.01
342 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTGAGAAA
TTTTTCGAACATCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTC
Found at i:10306620 original size:215 final size:215
Alignment explanation
Indices: 10306215--10306714 Score: 616
Period size: 215 Copynumber: 2.3 Consensus size: 215
10306205 TGAACTTGTC
* *
10306215 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * ** **
10306280 ATTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGGTTTCAAGTTAATCCATTCCTTATAGAA
66 ATTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAA
* * ** * * * *
10306345 ATTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 ATTTTCCAAACACCCAAGCTCGGAAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAA
*
10306410 CAAGTTTTGGCCT-TTAAATT
196 CAAGTTTTGGACTGTT-AATT
* * * *
10306430 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * ** *
10306494 CTTTCACGAGTTT-TTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAG
66 ATTTCACGA-TTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTAT-AG
*
10306557 CAAA-TTTCCAAACAACCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAATTTGCCATTTT
129 -AAATTTTCCAAAC-ACCCAAGCTCGGA-AAATCACATCATTTGGTCAAAATAATTTGCCATTTT
10306620 GTAAACAAGTTTTGGACTGTTAATT
191 GTAAACAAGTTTTGGACTGTTAATT
* * * *
10306645 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10306710 GATTT
66 -ATTT
10306715 ATTTACGTGA
Statistics
Matches: 241, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
213 1 0.00
214 85 0.35
215 121 0.50
216 31 0.13
217 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
ATTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAA
ATTTTCCAAACACCCAAGCTCGGAAAATCACATCATTTGGTCAAAATAATTTGCCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10307654 original size:62 final size:61
Alignment explanation
Indices: 10307588--10307727 Score: 158
Period size: 62 Copynumber: 2.2 Consensus size: 61
10307578 TTGGTTCTCC
* * * *
10307588 CTTGGTTCTTGAACGAACTTTTGAAC-TAGT-AAAAGACTTATTTACATCAGCACTGTTTCACT
1 CTTGGTTCTTG-ACGAACTTTCGAACTTA-TCAAAA-ACTCATTTACATAAGAACTGTTTCACT
* * *
10307650 CTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTTTCTCT
1 CTTGGTTC-TTGACGAACTTTCGAACTTATCAAAAACTCATTTACATAAGAACTGTTTCACT
10307712 CTTGGTTCTTGGACGA
1 CTTGGTTCTT-GACGA
10307728 CATCCAAACT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
61 2 0.03
62 56 0.84
63 9 0.13
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (61 bp):
CTTGGTTCTTGACGAACTTTCGAACTTATCAAAAACTCATTTACATAAGAACTGTTTCACT
Found at i:10308062 original size:215 final size:216
Alignment explanation
Indices: 10307681--10308175 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 216
10307671 CGAACTTATC
* * *
10307681 AAAAACTCATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * **
10307745 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCATCTAGAA
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCATCTAGAA
* * * * * *
10307810 ATTTTTCAATCATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTATCATTTTGTAA
131 ATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTATCATTTTGTAA
*
10307875 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * * * *
10307896 AAAAACTTATTTACGTGAGAATTATATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*** * *
10307960 CTTTCACGAGTTCTTTCATAACTTAGGTTCTTTAAAGCATTCAAGACGATCCATTCC-TTTGAGC
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCATCT-AG-
*
10308024 AAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTG
129 AAATTTTCCAAACATCCCATGCTCGGA-AAATCACATCATTTGGTCAAAACAGTTTATCATTTTG
10308087 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* * *
10308111 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10308176 GACTTATTTA
Statistics
Matches: 236, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
214 17 0.07
215 185 0.78
216 34 0.14
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCATCTAGAA
ATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAGTTTATCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10308212 original size:62 final size:62
Alignment explanation
Indices: 10308114--10308293 Score: 297
Period size: 62 Copynumber: 2.9 Consensus size: 62
10308104 GTTAATTAAT
* *
10308114 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10308176 GACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10308238 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10308294 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10308546 original size:62 final size:61
Alignment explanation
Indices: 10308480--10308639 Score: 203
Period size: 62 Copynumber: 2.6 Consensus size: 61
10308470 AATTGGTTCT
* * * *
10308480 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTATTTCA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
* * * * *
10308542 CTCTTGGTTCTTGGATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
*
10308604 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10308640 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
61 3 0.04
62 80 0.94
63 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACTTATTTACATAAGAACTATTTCA
Found at i:10308548 original size:340 final size:338
Alignment explanation
Indices: 10307896--10308853 Score: 1246
Period size: 340 Copynumber: 2.8 Consensus size: 338
10307886 CCTTTAAATT
* * * * * *
10307896 AAAAACTTATTTACGTGAGAATTATATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * * *
10307960 CTTTCACGAGTTCTTTCATAACTTAGGTTCTTTAAAGCATTCAAGACGATCCATTCCTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTTGA-CA
* * * * * *
10308025 AATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTAA
130 ATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * *
10308090 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
195 ACAAGTTTTGGCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * * *
10308155 CGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGA
259 CGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGA
10308220 ACTTCCAAACTTGTC
324 ACTTCCAAACTTGTC
* * *
10308235 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10308300 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTCGACC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTT-GA-C
* * * * *
10308364 AATTTTTTGAACATCCCGTGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
129 AATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
10308429 AACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTG
194 AACAAGTTTTGG-CCTTAAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTG
* * *
10308493 GACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGAT
257 GACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGAC
**
10308558 GAACTTCTGAACTTGTC
322 GAACTTCCAAACTTGTC
*
10308575 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10308640 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATAGA-
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTT-T-GAC
* * * *
10308704 AATTTTTCGAACAT-TCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
129 AATTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
10308768 AACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGAGAATT-GTATCTC-CTTGGTTGTTG
194 AACAAGTTTTGGCC-TTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTG
*
10308831 GATGAACTTTCAAACTTGTCAAA
257 GACGAACTTTCAAACTTGTCAAA
10308854 CTTTCACGAG
Statistics
Matches: 539, Mismatches: 71, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
338 34 0.06
339 117 0.22
340 380 0.71
341 5 0.01
342 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTTGACAA
TTTTTCGAACATCCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCAAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTC
Found at i:10308993 original size:215 final size:214
Alignment explanation
Indices: 10308575--10309069 Score: 606
Period size: 215 Copynumber: 2.3 Consensus size: 214
10308565 TGAACTTGTC
* * *
10308575 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * ** **
10308640 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATAGAA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAA
* * * * * *
10308705 ATTTTTCGAACATTCAAGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 ATTTTCCAAACATCCAAGCTCGGAAAATCACATCATTTGGTCTAAATAATTTGCCATTTTGTAAA
*
10308770 CAAGTTTTGGCCT-TTAAATT
195 CAAGTTTTGGACTGTT-AATT
* * * *
10308790 AAAAACTTATTGACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** *
10308854 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTAT-AG-
*
10308918 AAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTC-AAGATAATTTGCCATTTT
128 AAATTTTCCAAACAT-CCAAGCTCGGA-AAATCACATCATTTGGTCTAA-ATAATTTGCCATTTT
*
10308980 TTAAACAAGTTTTGGACTGTTAATT
190 GTAAACAAGTTTTGGACTGTTAATT
* *
10309005 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10309070 GACTTATTTA
Statistics
Matches: 238, Mismatches: 33, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
213 1 0.00
214 94 0.39
215 109 0.46
216 34 0.14
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAAA
TTTTCCAAACATCCAAGCTCGGAAAATCACATCATTTGGTCTAAATAATTTGCCATTTTGTAAAC
AAGTTTTGGACTGTTAATT
Found at i:10309045 original size:894 final size:894
Alignment explanation
Indices: 10307317--10310965 Score: 6692
Period size: 894 Copynumber: 4.1 Consensus size: 894
10307307 GTCCGTGACA
*
10307317 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGCGAGAATTGTTTCTCTCTTGGTTCTT
1 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* *
10307382 GGACGAACATCCGAACTTCTGAAACTTTTACGATTTCTTTTAGAACTTCGGTTCCTAAAAGTATC
66 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
10307447 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
131 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
10307512 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
196 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
*
10307577 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAACTAGTAAAAGACTTATTTACATCAGCACT
261 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
10307642 GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTT
326 GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTT
10307707 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
391 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
*
10307772 TTCCAAAAAGTATTCAAGTTAATCCATTCCATCTAGAAATTTTTC-AATCATTCCATGCTCGGAA
456 TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAA-CATTCCATGCTCGGAA
*
10307836 AATCCCATCATTTGGTCTAAATAGTTTATCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAA
520 AATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAA
* * *
10307901 CTTATTTACGTGAGAATTATATCTCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTCA
585 CTTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTCA
*
10307966 CGAGTTCTTTCATAACTTAGGTTCTTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTC
650 CGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTC
* *
10308031 CAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGT
715 CAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGCCATTTTGTAAACAAGT
10308096 TTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACT
780 TTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACT
10308161 TCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
845 TCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
* *
10308211 CTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
*
10308276 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATC
66 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
* *
10308341 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCGTGCTCGGGAAATCGCATAATTTGG
131 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
10308406 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
196 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
* * * * * * *
10308471 ATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACT
261 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
* * * * *
10308536 ATTTCACTCTTGGTTCTTGGATGAAC-TTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGT
326 GTTTCACTCTTGGTTCTTTGACGAACTTTC-GAACTTATCAAAAACTCATTTACGTAAGAATTGT
*
10308600 TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTC
390 TTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTC
* * *
10308665 GGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATAGAAATTTTTCGAACATT-CAAGCTCGGA
454 GGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGA
10308729 AAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAA
519 AAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAA
10308794 ACTTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTC
584 ACTTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTC
* *
10308859 ACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTT
649 ACGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTT
* * *
10308924 CCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAGATAATTTGCCATTTTTTAAACAAG
714 CCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGCCATTTTGTAAACAAG
10308989 TTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC
779 TTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC
10309054 TTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
844 TTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
*
10309105 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGCACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10309170 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
66 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
10309235 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
131 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
10309300 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
196 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
10309365 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
261 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
*
10309430 GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAGGAATTGTT
326 GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTT
10309495 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
391 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
*
10309560 TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGATCATTCCATGCTCGGAAA
456 TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAA
10309625 ATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAAC
521 ATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAAC
10309690 TTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTCAC
586 TTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTCAC
* *
10309755 GAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
651 GAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
* *
10309820 AAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAGATAATTTGCCATTTTGTAAACAAGTT
716 AAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGCCATTTTGTAAACAAGTT
10309885 TTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTT
781 TTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTT
10309950 CCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
846 CCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
10309999 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10310064 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
66 GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
10310129 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
131 CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
*
10310194 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTTCTTGAATTAAAAACTTATTTACGTGGCA
196 TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
10310259 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
261 ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
* *
10310324 GTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTATCAAAAACTCATTTACGTAGGAATTGTT
326 GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTT
10310389 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
391 TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
*
10310454 TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGATCATTCCATGCTCGGAAA
456 TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAA
10310519 ATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAAC
521 ATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAAC
* * *
10310584 TTATTTACGTGAGAATTGTATCTCCTTGGTCGTTGGATGAACTTTCGAACTTGTCAAACTTTCAC
586 TTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTCAC
10310649 GAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
651 GAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
*
10310714 AAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGTCATTTTGTAAACAAGTT
716 AAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGCCATTTTGTAAACAAGTT
10310779 TTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTT
781 TTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTT
* * ** *
10310844 CCAAACTTGTCAAAAACTTATTTACCTGAAAATTGTTTCTCTCTTGGTT
846 CCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
* * * *
10310893 CTTGGACCAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
1 CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10310958 GGACGAAC
66 GGACGAAC
10310966 TCCCAAACTT
Statistics
Matches: 2669, Mismatches: 81, Indels: 10
0.97 0.03 0.00
Matches are distributed among these distances:
893 96 0.04
894 2478 0.93
895 93 0.03
896 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (894 bp):
CTTGGACGAACTTCCAAACTTGTCAAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTT
GGACGAACGTCCGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATC
CAAGATGATCCATTCTTTCGACCAATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGG
TCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCA
ATTGGTTCTCCCTTGGTTCTTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCAGCACT
GTTTCACTCTTGGTTCTTTGACGAACTTTCGAACTTATCAAAAACTCATTTACGTAAGAATTGTT
TCTCTCTTGGTTCTTGGACGACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGG
TTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAA
ATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAAC
TTATTGACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAACTTTCAAACTTGTCAAACTTTCAC
GAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
AAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAACAATTTGCCATTTTGTAAACAAGTT
TTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTT
CCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTT
Found at i:10309106 original size:62 final size:61
Alignment explanation
Indices: 10309008--10309187 Score: 270
Period size: 62 Copynumber: 2.9 Consensus size: 61
10308998 GTTAATTAAT
* *
10309008 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* *
10309069 AGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
** * *
10309131 AATCTTATGCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10309188 CTGAAACTTT
Statistics
Matches: 107, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
61 2 0.02
62 105 0.98
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10309481 original size:62 final size:62
Alignment explanation
Indices: 10309376--10309515 Score: 144
Period size: 62 Copynumber: 2.3 Consensus size: 62
10309366 TTGGTTCTCC
* * *
10309376 CTTGGTTC-TTGAACGAACTTTTGAAATAGTAAAAGACTTATTTACATCA-GCACTGTTTCACT
1 CTTGGTTCTTTG-ACGAACTTTCGAAATAGTAAAAGACTCATTTACAT-AGGAACTGTTTCACT
* * * *
10309438 CTTGGTTCTTTGACGAACTTTCGAACTTA-TCAAAA-ACTCATTTACGTAGGAATTGTTTCTCT
1 CTTGGTTCTTTGACGAACTTTCGAA-ATAGT-AAAAGACTCATTTACATAGGAACTGTTTCACT
*
10309500 CTTGGTTCTTGGACGA
1 CTTGGTTCTTTGACGA
10309516 CATCCAAACT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
61 1 0.02
62 56 0.85
63 9 0.14
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
CTTGGTTCTTTGACGAACTTTCGAAATAGTAAAAGACTCATTTACATAGGAACTGTTTCACT
Found at i:10309686 original size:339 final size:340
Alignment explanation
Indices: 10308790--10309740 Score: 1136
Period size: 340 Copynumber: 2.8 Consensus size: 340
10308780 CCTTTAAATT
* * * * * *
10308790 AAAAACTTATTGACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * * *
10308854 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCT-AG-
* * * * *
10308918 AAA-TTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTC-AAGATAATTTGCCATTTTT
129 AAATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAA-ATAGTTTGTCATTTTG
* * * * * *
10308981 TAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
193 TAAACAAGTTTTGGCCT-TTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTTGGTTCTT
* * * * * *
10309046 GGACGAAC-TTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGG
257 GGACGAACTTTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGG
*
10309110 ACGAACTTCCAAACTTGTC
322 ACGAACTTCCAAACTTATC
* * * * * *
10309129 AAAATCTTATGCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTTCTGAAA
1 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * **
10309194 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAA
* * * *
10309259 ATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
131 ATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
10309324 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCCCTTGGTTCTTGA
196 ACAAGTTTTGG-CCTTTAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCCCTTGGTTCTTGG
** *
10309388 ACGAACTTTTGAAA-TAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTTGAC
259 ACGAACTTTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGGAC
* *
10309452 GAACTTTCGAACTTATC
324 GAACTTCCAAACTTATC
* *
10309469 AAAAACTCATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAA
1 AAAAACTTATTCACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* * *
10309532 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGA
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGA
* * *
10309597 AATTTTTCGATCATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 AATTTTTCGAACATCCCATGCTCGAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
* *
10309661 AAACAAGTTTTGGCCTTTAAATTAAAAACTTATTGACGTGAGAATT-GTATCT-CCTTGGTTGTT
194 AAACAAGTTTTGGCCTTT-AATTAAAAACTTATTTACGTGAGAATTGGT-TCTCCCTTGGTTCTT
*
10309724 GGATGAACTTT-CAAACT
257 GGACGAACTTTCCAAACT
10309741 TGTCAAACTT
Statistics
Matches: 517, Mismatches: 82, Indels: 27
0.83 0.13 0.04
Matches are distributed among these distances:
337 3 0.01
338 27 0.05
339 195 0.38
340 283 0.55
341 9 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAA
ATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGCCTTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTTGGTTCTTGGAC
GAACTTTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGGACGA
ACTTCCAAACTTATC
Found at i:10309850 original size:215 final size:215
Alignment explanation
Indices: 10309469--10309963 Score: 619
Period size: 215 Copynumber: 2.3 Consensus size: 215
10309459 CGAACTTATC
* *
10309469 AAAAACTCATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAA
1 AAAAACTTA-TTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * * **
10309532 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGA
64 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGA
* * * * * * *
10309597 AATTTTTCGATCATTCCATGCTCGGAAAATCCCATCATTTGGTCTAA-ATAGTTTGTCATTTTGT
129 AATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTC-AAGATAATTTGCCATTTTGT
*
10309661 AAACAAGTTTTGGCCT-TTAAATT
193 AAACAAGTTTTGGACTGTT-AATT
* * * *
10309684 AAAAACTTATTGACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** *
10309748 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-
10309812 AAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAGATAATTTGCCATTTTG
128 AAATTTTCCAAACATCCCATGCTCGGA-AAATCACATCATTTGGTCAAGATAATTTGCCATTTTG
10309875 TAAACAAGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
* *
10309899 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10309964 GACTTATTTA
Statistics
Matches: 240, Mismatches: 30, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
214 20 0.08
215 182 0.76
216 38 0.16
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAGATAATTTGCCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10310000 original size:62 final size:61
Alignment explanation
Indices: 10309902--10310081 Score: 279
Period size: 62 Copynumber: 2.9 Consensus size: 61
10309892 GTTAATTAAT
* *
10309902 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* *
10309963 AGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10310025 AATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTT
1 AA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
10310082 CTGAAACTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
61 2 0.02
62 106 0.98
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10310375 original size:62 final size:62
Alignment explanation
Indices: 10310300--10310426 Score: 141
Period size: 62 Copynumber: 2.0 Consensus size: 62
10310290 TTGAAATAGT
* * * * *
10310300 AAAAGACTTATTTACATCA-GCACTGTTTCACTCTTGGTTCTTTGACGAACTTCCGAACTTATC
1 AAAAGACTCATTTACAT-AGGAACTGTTTCACTCTTGGTTCTTGGACG-ACATCCAAACTTATC
* * * *
10310363 AAAA-ACTCATTTACGTAGGAATTGTTTCTCTCTTGGTTCTTGGACGACATCCAAACTTGTC
1 AAAAGACTCATTTACATAGGAACTGTTTCACTCTTGGTTCTTGGACGACATCCAAACTTATC
10310424 AAA
1 AAA
10310427 CTTTTACGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
61 16 0.30
62 34 0.63
63 4 0.07
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.35
Consensus pattern (62 bp):
AAAAGACTCATTTACATAGGAACTGTTTCACTCTTGGTTCTTGGACGACATCCAAACTTATC
Found at i:10310580 original size:339 final size:339
Alignment explanation
Indices: 10309684--10310601 Score: 1136
Period size: 340 Copynumber: 2.7 Consensus size: 339
10309674 CCTTTAAATT
* * * * * *
10309684 AAAAACTTATTGACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * * *
10309748 CTTTCACGAGTTCTTTTATAAGTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCT-AG-
* * * *
10309812 AAA-TTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTC-AAGATAATTTGCCATTTTG
129 AAATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAA-ATAGTTTGTCATTTTG
* * * * *
10309875 TAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
193 TAAACAAGTTTTGG-CTCTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTTAGTTCTT
* * * * * * *
10309940 GGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGA
257 GAACGAACTTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGGA
*
10310005 CGAACTTCCAAACTTGTC
322 CGAACTTCCAAACTTATC
* * * * * *
10310023 AAAATCTTATGTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * **
10310088 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTTCGACCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAA
* * * *
10310153 ATTTTTTGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
131 ATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * *
10310218 ACAAGTTTCGGTTCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCCCTTGGTTCTTGA
196 ACAAGTTTTGGCTCTT-AATTAAAAACTTATTTACGTGAG-AATTGGTTCTCCCTTAGTTCTTGA
** *
10310282 ACGAACTTTTGAAA-TAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTTGAC
259 ACGAAC-TTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGGAC
*
10310346 GAACTTCCGAACTTATC
323 GAACTTCCAAACTTATC
*
10310363 AAAAACTCATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* * *
10310426 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGA
65 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGA
* * *
10310491 AATTTTTCGATCATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 AATTTTTCGAACATCCCATGCTCGAG-AAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
10310555 AAACAAGTTTTGGC-CTTTAAATTAAAAACTTATTTACGTGAGAATTG
194 AAACAAGTTTTGGCTC-TT-AATTAAAAACTTATTTACGTGAGAATTG
10310602 TATCTCCTTG
Statistics
Matches: 493, Mismatches: 75, Indels: 22
0.84 0.13 0.04
Matches are distributed among these distances:
338 2 0.00
339 199 0.40
340 285 0.58
341 7 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAA
ATTTTTCGAACATCCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGCTCTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCCCTTAGTTCTTGAAC
GAACTTCCAAACTAGTAAAAGACTTATTTACATCAGCACTGTTTCACTCTTGGTTCTTGGACGAA
CTTCCAAACTTATC
Found at i:10310744 original size:215 final size:215
Alignment explanation
Indices: 10310363--10310857 Score: 617
Period size: 215 Copynumber: 2.3 Consensus size: 215
10310353 CGAACTTATC
* *
10310363 AAAAACTCATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGA-GAATTGTTTCTCTCTTGG-TCTTGGACGAACTTCCAAACTTGTCAA
* * * * * **
10310426 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGA
64 ACTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGA
* * * * * * * *
10310491 AATTTTTCGATCATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
129 AATTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAATTTGTCATTTTGTA
*
10310556 AACAAGTTTTGGCCT-TTAAATT
194 AACAAGTTTTGGACTGTT-AATT
* * * *
10310578 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTCGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTC-TTGGACGAACTTCCAAACTTGTCAAA
** *
10310642 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGC
65 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-
10310706 AAA-TTTCCAAACATCCCATGCTC-GAGAAATCACATCATTTGGTCAAAACAATTTGTCATTTTG
128 AAATTTTCCAAACATCCCATGCTCGGA-AAATCACATCATTTGGTCAAAACAATTTGTCATTTTG
10310769 TAAACAAGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
* * *
10310793 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTCTTGGACGAACTTCCAAACTTGTCAAA
10310858 AACTTATTTA
Statistics
Matches: 239, Mismatches: 32, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
213 2 0.01
214 14 0.06
215 188 0.79
216 32 0.13
217 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCTTGGACGAACTTCCAAACTTGTCAAAC
TTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATCCCATGCTCGGAAAATCACATCATTTGGTCAAAACAATTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10311222 original size:62 final size:62
Alignment explanation
Indices: 10310796--10311212 Score: 642
Period size: 62 Copynumber: 6.7 Consensus size: 62
10310786 GTTAATTAAT
* *
10310796 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10310858 AACTTATTTACCTGAAAATTGTTTCTCTCTTGGTTCTTGGACCAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10310920 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10310982 CACTTATTTACGTGAGAATGGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10311044 AATTTATTTACGTGAGAATTG-TTC-CTCTTGGTTCTTGGACGAACTACCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10311104 AACTTATTTACGTGAGAATT-TAATTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGCCAAA
1 AACTTATTTACGTGAGAATTGT--TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10311167 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10311213 ATCTGAACTT
Statistics
Matches: 323, Mismatches: 27, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
60 53 0.16
61 3 0.01
62 217 0.67
63 49 0.15
64 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10311488 original size:60 final size:62
Alignment explanation
Indices: 10311383--10311612 Score: 356
Period size: 62 Copynumber: 3.7 Consensus size: 62
10311373 GTTAATTAAT
* *
10311383 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10311445 AACTTATTTACGTGAGAATTGTTT-T-TCTTGGTTCTTGAACGAACTTCCACACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10311505 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10311567 ATCTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10311613 ATTCGAACTT
Statistics
Matches: 152, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
60 56 0.37
61 2 0.01
62 94 0.62
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10311541 original size:122 final size:124
Alignment explanation
Indices: 10311383--10311612 Score: 365
Period size: 122 Copynumber: 1.9 Consensus size: 124
10311373 GTTAATTAAT
*
10311383 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
*
10311448 TTATTTACGTGAGAATTGTTT-T-TCTTGGTTCTTGAACGAACTTCCACACTTGTCAAA
66 TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCACACTTGTCAAA
* * * * * *
10311505 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATC
1 AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
*
10311570 TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGAACGAAC
10311613 ATTCGAACTT
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 78 0.80
123 1 0.01
124 18 0.19
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (124 bp):
AACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCACACTTGTCAAA
Found at i:10311874 original size:62 final size:61
Alignment explanation
Indices: 10311808--10311966 Score: 201
Period size: 62 Copynumber: 2.6 Consensus size: 61
10311798 AATTGGTTCT
* * * * *
10311808 CTCTTGGCTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGAC-AACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
10311870 CTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCT
1 CTCTTGGTTCTTGGAC-AACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* *
10311932 CTCTTGGTTCTTGGACGACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACAACTTCCGAACTTGTCAAA
10311967 CTTTTACGAT
Statistics
Matches: 83, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
61 16 0.19
62 67 0.81
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:10311955 original size:400 final size:400
Alignment explanation
Indices: 10310983--10311966 Score: 1518
Period size: 400 Copynumber: 2.5 Consensus size: 400
10310973 CTTGTCAAAC
*
10310983 ACTTATTTACGTGAGAA-TGGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAT
1 ACTTATTTACGTGAGAATTGG-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10311047 TTATTTACGTGAGAATTG-TTCCTCTTGGTTCTTGGACGAACTACCAAACTTGTGAAAAACTTAT
65 TTATTTACGTGAGAATTGTTTCCTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAACTTAT
*
10311111 TTACGTGAGAATTTAATTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGCCAAAATCTTATTT
130 TTACGTGAGAATTT--TTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTATTT
*
10311176 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTACGATTT
193 ACGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTACGATTT
* *
10311241 CTTTTATAACTTCGGTTCCTGAAAGTATCCAGGATGATCCATTCTTTCGACCAATTTTTCGAACA
258 CTTTTATAACTTCGATTCCTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTTCGAACA
* * *
10311306 TCCCATGCTCGGGAAATTGCATAATTTGGTCTAAATAGTTTGTCATTTTGAAAACAAGTTTTGGA
323 TCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGCTTGTCATTTTGAAAACAAGTTTCGGA
** *
10311371 TTGTTAATTAATA
388 TCCTTAATTAAAA
* * *
10311384 ACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* *
10311449 TATTTACGTGAGAATTGTTT-TTCTTGGTTC-TTGAACGAACTTCCACACTTGTCAAAAACTTAT
66 TATTTACGTGAGAATTGTTTCCTCTTGGTTCTTTG-ACGAACTTCCAAACTTGTCAAAAACTTAT
10311512 TTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTATTTA
130 TTACGTGAGAA-TTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTATTTA
10311577 CGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-TCGAACTTCTGAAACTTTTACGATTT
194 CGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCT-GAACTTCTGAAACTTTTACGATTT
*
10311641 CTTTTATAACTTCGATTCCTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTTTGAACA
258 CTTTTATAACTTCGATTCCTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTTCGAACA
* *
10311706 TCCCAT-CTCGGGAAATCGCATAATTTGGTCTAAATAGCTTGTCTTTTTGTAAACAAGTTTCGG-
323 TCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGCTTGTCATTTTGAAAACAAGTTTCGGA
10311769 TCCTTGAATTAAAA
388 TCCTT-AATTAAAA
* * * * *
10311783 ACTTATTTACGTG-GCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTTCGAACTTGTCAAAGAC
1 ACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
10311847 TTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAACTTA
65 TTATTTACGTGAGAATTGTTTC-CTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAACTTA
* * *
10311912 TTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAC-GACATCCGAACTTGTCAAA
129 TTTACGTGAGAATT-TTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
10311967 CTTTTACGAT
Statistics
Matches: 534, Mismatches: 38, Indels: 23
0.90 0.06 0.04
Matches are distributed among these distances:
398 4 0.01
399 132 0.25
400 200 0.37
401 188 0.35
402 10 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (400 bp):
ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCCTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAACTTATT
TACGTGAGAATTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATCTTATTTACG
TGACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTCTGAAACTTTTACGATTTCTT
TTATAACTTCGATTCCTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTTCGAACATCC
CATGCTCGGGAAATCGCATAATTTGGTCTAAATAGCTTGTCATTTTGAAAACAAGTTTCGGATCC
TTAATTAAAA
Found at i:10312119 original size:338 final size:337
Alignment explanation
Indices: 10311442--10312180 Score: 943
Period size: 338 Copynumber: 2.2 Consensus size: 337
10311432 CAAACTTGTC
* * *
10311442 AAAAACTTATTTACGTGAGAATTGTT-TTTCTTGGTTCTTGAACGAAC-TTCCACACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGG-TCTTGGACGAACTTTCGA-ACTTGTCAAA
* * * * * * *
10311505 AACTTATTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAATC
64 AACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
* * * *
10311570 TTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTCTGAAACTTTTA
129 TTATTTACATAACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTA
** * * * *
10311635 CGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAGGATCATCCATTCTTTCGACCAATTTTT
194 CGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATTCCTTAGACCAATTTTT
* * * * *
10311700 TGAACATCCCATCTCGGGAAATCGCATAATTTGGTCTAAATAGCTTGTCTTTTTGTAAACAAGTT
259 TGAACATCCAAGCTCGGAAAATCCCATAATTTGGTCTAAATAGCTTGTCATTTTGTAAACAAGTT
*
10311765 TCGGTCCTTGAATT
324 TCGGTCCTTAAATT
*
10311779 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGCTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATT-GTTCTCTCTTGG-TCTTGGACGAACTTTCGAACTTGTCAA
* * * *
10311843 AGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGACGAACTTCCAAACTTGTCAAAAA
63 AAACTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
* *
10311908 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAACTTTT
128 CTTATTTACATAACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTT
* * * * * *
10311972 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATA-GAATTTT
193 ACGATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATTCCTTAGACCAATTTT
* ** *
10312036 TTCGAACATTCAAGCTCGGAAAATCCCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
258 TT-GAACATCCAAGCTCGGAAAATCCCATAATTTGGTCTAAATAGCTTGTCATTTTGTAAACAAG
*
10312101 TTT-TGTCCTTTAAATT
322 TTTCGGTCC-TTAAATT
*
10312117 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTCGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTC-TTGGACGAACTTTCGAACTTGTCAAA
10312181 CTTTCACGAG
Statistics
Matches: 346, Mismatches: 47, Indels: 18
0.84 0.11 0.04
Matches are distributed among these distances:
336 3 0.01
337 64 0.18
338 156 0.45
339 119 0.34
340 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (337 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTCTTGGACGAACTTTCGAACTTGTCAAAAA
CTTATTTACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTT
ATTTACATAACAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTCTCAAACTTTTACG
ATTTCTTTTATAACTTCGATTCCAAAAAGTATCCAAGATAATCCATTCCTTAGACCAATTTTTTG
AACATCCAAGCTCGGAAAATCCCATAATTTGGTCTAAATAGCTTGTCATTTTGTAAACAAGTTTC
GGTCCTTAAATT
Found at i:10312355 original size:215 final size:214
Alignment explanation
Indices: 10311920--10312396 Score: 557
Period size: 214 Copynumber: 2.2 Consensus size: 214
10311910 TATTTACATA
* * * *
10311920 AGAATTGTTTCTCTCTTGGTTCTTGGACG-ACATCCGAACTTGTCAAACTTTTACGATTTCTTTT
1 AGAATTGTTTCTCTCTTGG-TCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTTCTTTC
* ** ** ** * * *
10311984 ATAACTTCGGTTCCAAAAAGTTTTCAAGTTAATCCATTCCTTATAGAATTTTTTCGAACATTCAA
65 ATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAAAATTTCCAAACATCCAA
* ** * * ** *
10312049 GCTCGGAAAATCCCATCTTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGTCCTTTAA
130 GCTCGGAAAATCACATCACTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTAA
**
10312114 ATTAAAAACTTATTTACGTG
195 ATTAAAAACTTAGCTACGTG
* * *
10312134 AGAATTGTATCTC-CTTGGTCGTTGGATGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTC
1 AGAATTGTTTCTCTCTTGGTC-TTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTTCTTTC
** *
10312198 ATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGAAAATTTCCAAACATCCC
65 ATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTAT-AGAAAATTTCCAAACAT-CC
*
10312262 ATGCTC-GAGAAATCACATCACTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTG
128 AAGCTCGGA-AAATCACATCACTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTG
* *
10312326 TGAATTAATAACTTAGCTACGTG
192 TAAATTAAAAACTTAGCTACGTG
* *
10312349 AGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AGAATTGTTTCTCTCTT-GGTCTTGGACGAACTTCCGAACTTGTCAAA
10312397 GACTTATTTA
Statistics
Matches: 218, Mismatches: 38, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
212 2 0.01
213 12 0.06
214 91 0.42
215 84 0.39
216 26 0.12
217 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (214 bp):
AGAATTGTTTCTCTCTTGGTCTTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTTCTTTCA
TAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTATAGAAAATTTCCAAACATCCAAG
CTCGGAAAATCACATCACTTGGTCAAAACAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTAAA
TTAAAAACTTAGCTACGTG
Found at i:10312514 original size:62 final size:62
Alignment explanation
Indices: 10312343--10312500 Score: 280
Period size: 62 Copynumber: 2.5 Consensus size: 62
10312333 ATAACTTAGC
* *
10312343 TACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAGACTTATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
* *
10312405 TACGTGAGTACTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
10312467 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
1 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
10312501 TAACATCTGA
Statistics
Matches: 90, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (62 bp):
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
Found at i:10312747 original size:62 final size:61
Alignment explanation
Indices: 10312672--10312860 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 61
10312662 TCCTAGAATT
* * *
10312672 AAAAACTTATTTACGTGGCAATAGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTC
1 AAAAACTTATTTACGTGG-AATAGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
* * * *
10312734 AAAGACTTATTTACAT-GAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGGAATA--GTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
* * *
10312796 AAAAACTTATTTACGTAAGAATTA-TTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-GGAA-TAGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
10312858 AAA
1 AAA
10312861 CTTTTATGAT
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
60 3 0.03
61 1 0.01
62 101 0.93
64 2 0.02
65 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACGTGGAATAGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
Found at i:10312798 original size:340 final size:340
Alignment explanation
Indices: 10312117--10315551 Score: 2244
Period size: 340 Copynumber: 10.2 Consensus size: 340
10312107 CCTTTAAATT
* * *
10312117 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGG-TCGTTGGA-TGAACTTTCGAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGACT-AACATCCGAACTTGTCA
* * * * * *
10312179 AACTTTCACGAGTTCTTTCATAACTT-AGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-G
64 AACTTTTACGATTTCTTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCG
* * * * * * * * * * *
10312242 AGAAAATTTCCAAACATCCCATGCTCGAGAAATCACATCACTTGGTCAAAACAGTTTGTCATTTT
127 AGCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTT
* * * * ** * *
10312307 GTAAACAAGTTTTGG-ACTGTGAATTAATAACTTAGCTACGTGAGAATTGTTTCTCTCTTAGTTC
192 GTAAACAAGTTTCGGTCCT-AGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTC
* * * *
10312371 TTGGACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTG
256 TTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTG
* *
10312436 GACGAACTTCCAAACTTGTC
321 GATGAACTTCCGAACTTGTC
* * *
10312456 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTCTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* *
10312521 CTTTTACGATTTCTTTTATAACTTTAGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* *
10312586 ATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGCAA
131 ATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
*
10312651 ACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTG-GCAATAGGTTCTCTCTTGGTTCTTGG
196 ACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGG
* *
10312715 ATGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATG
260 ACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATG
10312780 AACTTCCGAACTTGTC
325 AACTTCCGAACTTGTC
* * *
10312796 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* * * * * *
10312861 CTTTTATGATTTCTTTTATAACTTCGGTT-C-GAAAGAGTATTCAAGTTAATCCATTCCTTCTAG
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTG-AA-AGTATTCAAGATGATCCATTCTTTCGAG
* * * * * *
10312924 GAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGT-TATTTTG
129 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT-TTTTG
* * * * *
10312988 TAAACCAGTTTTGG-CCTTTA-AATTAAAAACTTATTTACGTGAGAATTGTTTCTC-CTCGGTTA
193 TAAACAAGTTTCGGTCC--TAGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTC
* * ** * * *
10313050 TTGGTCGAACTTTCGAACTTGT-AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTG
256 TTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTT-
* * *
10313114 GGGTCCAACTTCCAAACTTGTC
320 GGAT-GAACTTCCGAACTTGTC
* *
10313136 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTCTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAA
* *
10313200 ACTTTTACGATTTCTTTTATAACTTC-GATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAC
65 ACTTTTACGATTTCTTTTATAACTTCAG-TTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAG
* * *
10313264 CAATTTTTTGAACATCTCATGCTCGGGAAAACGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
129 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT
* *
10313329 TAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTT
194 AAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTT
* * * *
10313393 GGACGAACTTTCGAACTAGTCAAAGACTTATTTACCTGAGTACTGTTTCAATCTTGGTTCTTGGG
258 GGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGA
*
10313458 TGAACTTCTGAACTTGTC
323 TGAACTTCCGAACTTGTC
* * *
10313476 AAAAACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* ** * * *
10313541 CTTTTATGATTTCTTTTATAACTTC-GATTCCAAAAAGTAGTT----ATGTTCCATTCCTTCTAG
66 CTTTTACGATTTCTTTTATAACTTCAG-TTCCTGAAAGTA-TTCAAGATGATCCATTCTTTCGAG
* * * * ** * ** * * * * * * *
10313601 AAATTTTTCGAGCATTCCAAG--AAGTATCTC-CATAGTTGTTGGAC-GAACA-TTCGAAC---A
129 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATA-AT-TTGGTCTAAATAGTTTG-TCTTTT
* * * * * * * * * *
10313658 TGTCAAAC---TTTCACGAGTTCT----TTTATAACTTAGGTTCCTTAAAGCATTCAAG-ACGAT
191 TGT-AAACAAGTTT--CG-GTCCTAGAATTAAAAACTTA-TTTACGT-GAGAATT--GGTTC--T
* * * * * * * * * * * * * *
10313715 C-CAT--TCCTTTGA-GCAAATTTCTAAACAT-TCCATG-CTCGAGAAATCACATCA-T-TTG-G
246 CTCTTGGTTCTTGGACG-AACTTTC-GAACTTGTCAAAGACT----TATTTACATGAGTACTGTT
* * * * * ** * ** * *
10313771 TCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAC-TGTTA
305 TC--ACT-CTTGGT--TCTTG-GATGAACTTCCGAACTTG-TC
* * *
10313813 ATTAATAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 A--AA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
* * * *
10313878 AAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTTGA
63 AAACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGA
* * * *
10313943 GCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGCCTTTTTG
128 GCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
* ** *
10314008 TAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTG-GCAATTGTTTCTCTCTTGGTTCT
193 TAAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCT
* *
10314072 TGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGTTCTT-G
257 TGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
10314136 --G-A----CGAACTTGTC
322 ATGAACTTCCGAACTTGTC
* * **
10314148 AAAAACTTATTTACGT---AA----------CTTGTTTCTTGGACGAACATTAGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* * * * * * *
10314200 CTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAA-GTATTCAAGATGATCCATTCTTTCGAGC
* * ** * * * *
10314264 AATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTGTA
130 AATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
* * * ** *
10314329 AACTAGTTTTGG-CCTTTA-AATAAAAAACTTATTTACGTGAGAATTGCATCTC-CTTGGTTGTT
195 AACAAGTTTCGGTCC--TAGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
* * *
10314391 GGACGAACTTTCGAACTTGTC-AA-AC---TTT-CACGAGT--TGTTTTA-TAACTGAGGTTCCT
258 GGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACT--CT-TGGTT-CT
* *
10314447 TAAAGCATTCAAGACGATCCATTCCTTTAAGCAAATT-TC
319 T---GGA-T---GA--A--C-TTCC-----G-AACTTGTC
* * * * ** * ** **
10314486 -CAAAC--ATTCCATGCTCGAGAA--ATCACATCAT-TTGG-TCAAAATT-GTCTGTCATTTTG-
1 AAAAACTTATT-TACG-T-GAGAATTGTTTC-TC-TCTTGGTTC----TTGGACTAACA-TCCGA
**** * * ** * * *
10314542 ACCAAAC-AAGTTTT-GGACTGTTAATTAATAACTT-AGTTACGTGAGAATTGT-TTC----T-C
56 ACTTGTCAAACTTTTACGA-T-TTCTTTTATAACTTCAGTT-CCTGA-AA--GTATTCAAGATGA
* * * * * * ** * * *
10314598 TCTTAGTTC-TTGGA-C-GTTTGTCCAA-A---CTTG-TC---AAA-AAC-TTATTTACGT-GAG
115 TC-CA-TTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTT-GGTCTA-
* * * ** * *** * * *
10314649 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTTG--TCAAAAACTTATTTACATGAG
176 AATAGTTTGTCT-TT--TT-GTAAAC-AAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAG
* * * * * * * * * * *
10314711 AATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAAT
236 AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTAC
* * *
10314776 TGTTTCTCTCTTGGTTCTTGGACT-AACATCCAAACTTGTC
301 TGTTTCACTCTTGGTTCTTGGA-TGAACTTCCGAACTTGTC
10314816 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAA
* * *
10314880 ACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGC
65 ACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGC
* * *
10314945 AATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
130 AATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
* * *
10315010 AAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTG
195 AACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTG
* * * *
10315074 GACGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTT-G--
259 GACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAT
10315136 G-A--T--GAACTTGTC
324 GAACTTCCGAACTTGTC
* * * * *
10315148 GAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
* * * * * * * *
10315213 CTTTTACGATTTCTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAA-GTATTCAAGATGATCCATTCTTTCGAGC
* * * ** * * *
10315277 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
* * * *
10315342 AAAAAGTTTTGG-CCTTTA-AATTAAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTGT
195 AACAAGTTTCGGTCC--TAGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCT
* * * * * *
10315403 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
257 TGGACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
* **
10315468 ACGAACTTCTAAACTTGTC
322 ATGAACTTCCGAACTTGTC
* *
10315487 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
10315552 AACTTAATTA
Statistics
Matches: 2383, Mismatches: 489, Indels: 448
0.72 0.15 0.13
Matches are distributed among these distances:
309 1 0.00
310 6 0.00
311 2 0.00
312 9 0.00
313 6 0.00
316 2 0.00
317 2 0.00
318 34 0.01
319 171 0.07
320 2 0.00
323 1 0.00
326 3 0.00
327 2 0.00
328 7 0.00
329 36 0.02
330 31 0.01
331 109 0.05
332 243 0.10
333 29 0.01
334 22 0.01
335 20 0.01
336 17 0.01
337 53 0.02
338 53 0.02
339 161 0.07
340 962 0.40
341 81 0.03
342 76 0.03
343 44 0.02
344 20 0.01
345 8 0.00
346 19 0.01
347 19 0.01
348 27 0.01
349 27 0.01
350 24 0.01
351 21 0.01
352 19 0.01
353 6 0.00
354 5 0.00
355 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
ATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
ACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
CGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGA
ACTTCCGAACTTGTC
Found at i:10313084 original size:60 final size:61
Alignment explanation
Indices: 10313011--10313200 Score: 258
Period size: 64 Copynumber: 3.1 Consensus size: 61
10313001 GCCTTTAAAT
* * *
10313011 TAAAAACTTATTTACGTGAGAATTGTTTCTC-CTCGGTTATTGGTCGAACTTTCGAACTTG
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCGAACTTG
* * *
10313071 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGGGTCCAACTTCCAAACTTG
1 TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT--GGTCGAACTTCCGAACTTG
* *
10313134 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT-GAACATCCGAACTTC
1 T-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-TCGAACTTCCGAACTTG
10313196 TAAAA
1 TAAAA
10313201 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
60 30 0.26
61 12 0.11
62 14 0.12
63 18 0.16
64 40 0.35
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (61 bp):
TAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCCGAACTTG
Found at i:10313448 original size:62 final size:61
Alignment explanation
Indices: 10313382--10313540 Score: 183
Period size: 62 Copynumber: 2.6 Consensus size: 61
10313372 ATTGGTTCTC
* * * *
10313382 TCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACCTGAGTACTGTTTCAA
1 TCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACTTATTTACCTAAGAACTGTTTCAA
** * * * **
10313444 TCTTGGTTCTTGGGTGAACTTCTGAACTTGTCAAAAACTTTTTTACGTAAGAATTGTTTCTC
1 TCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACTTATTTACCTAAGAACTGTTTCAA
*
10313506 TCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 TCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10313541 CTTTTATGAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
61 3 0.04
62 76 0.94
63 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (61 bp):
TCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACTTATTTACCTAAGAACTGTTTCAA
Found at i:10313473 original size:680 final size:676
Alignment explanation
Indices: 10312117--10314410 Score: 2477
Period size: 680 Copynumber: 3.4 Consensus size: 676
10312107 CCTTTAAATT
* * * * * *
10312117 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGG-TCGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTATTTCTCCTTGGTTC-TTGGACGAACATCCGAACTTGTCAAA
* * * * * * ***
10312181 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT-TGAGA
65 CTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAGTATTCAAGTTAATCCATTCCTTCT-AGA
* * * * * * *
10312245 AAATTTCCAAACATCCCATGCTC-GAGAAATCACATCACTTGGTCAAAACAGTTTGTCATTTTGT
128 AATTTTTCGAACATTCCATGCTCGGA-AAATCCCATCATTTGGTCCAAACAGTTTGTCATTTTGT
* * * * * ** * *
10312309 AAACAAGTTTTGGACTGTGAATTAATAACTTAGCTACGTGAGAATTGTTTCTCTCTTAGTTCTTG
192 AAACCAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTATTG
* * * * * *
10312374 GACGAACTTCCAAACTTGTCAAAGACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTT-GGA
256 GACGAACTTTCGAACTTGT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGGT
10312438 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-
320 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TG
* * *
10312502 AACATCTGAACTTCTGAAACTTTTACGATTTCTTTTATAACTT-TAGTTCCTGAAAGTATCCAAG
384 AACATCCGAACTTCTAAAACTTTTACGATTTCTTTTATAACTTCGA-TTCCTGAAAGTATCCAAG
10312566 ATGATCCATTCTTTCGAGCAATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTA
448 ATGATCCATTCTTTCGAGCAATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTA
* *
10312631 AATAGTTTGTCTTTTTGCAAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGGCAATAG
513 AATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGGCAATTG
*
10312696 GTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTT
578 GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTT
*
10312761 CACTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
643 CACTCTTGGTTCTTGGGTGAACTT-CGAACTTGTC
10312796 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTATTTCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10312861 CTTTTATGATTTCTTTTATAACTTCGGTTCGAAAGAGTATTCAAGTTAATCCATTCCTTCTAGGA
65 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAA-AGTATTCAAGTTAATCCATTCCTTCTAGAA
* *
10312926 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTTATTTTGTAA
129 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAACAGTTTGTCATTTTGTAA
* *
10312991 ACCAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCTCGGTTATTGGTC
194 ACCAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTATTGGAC
* *
10313056 GAACTTTCGAACTTGTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGGGTCCA
259 GAACTTTCGAACTTGTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGGTCGA
10313121 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACA
323 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACA
10313186 TCCGAACTTCTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGAT
388 TCCGAACTTCTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGAT
* * *
10313251 CCATTCTTTCGACCAATTTTTTGAACATCTCATGCTCGGGAAAACGCATAATTTGGTCTAAATAG
453 CCATTCTTTCGAGCAATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAG
* *
10313316 TTTGTCTTTTTGTTAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCT
518 TTTGTCTTTTTGTAAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGGCAATTGGTTCT
* *
10313381 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACCTGAGTACTGTTTCAATC
583 CTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTC
10313446 TTGGTTCTTGGGTGAACTTCTGAACTTGTC
648 TTGGTTCTTGGGTGAACTTC-GAACTTGTC
* *
10313476 AAAAACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTATTTCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10313541 CTTTTATGATTTCTTTTATAACTTCGATTCCAAAAAGTAGTT-ATG-T--TCCATTCCTTCTAGA
65 CTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAGTA-TTCAAGTTAATCCATTCCTTCTAGA
* * * * * * *
10313602 AATTTTTCGAGCATTCCA-----AGAAGTATCTCCAT-AGTTGTTGG-ACGAACA-TTCGAACA-
128 AATTTTTCGAACATTCCATGCTCGGAA-AATC-CCATCA--T-TTGGTCCAAACAGTTTG-TCAT
** * **** * * * **
10313658 --TGTCAAACTTTCACGAGTT--CTTTTATAACTTAGGTTCCTTA--AAGCATTCAAGACGATCC
187 TTTGT-AAAC---CA-GTTTTGGCCTTTA-AA-TTA-AAAACTTATTTA-C-GT-GAGA--ATTG
* * ** * * * * * * * * * *
10313717 ATTC-CTTTGAGCAAATT--TCTAAACATTCCATGCTCG-AGAAATCACATCATTT-GGTCAAAA
239 TTTCTCCTTG-G-TTATTGGAC-GAACTTTCGA-ACTTGTA-AAA--AC-TTATTTACGTGAGAA
* * * * ** ** * * * *
10313777 TAGTTTGTCAT-TTTGTAAACAAGTTTTGGACTGT--TAA--T-T-AATAACTTATTTACGTGAG
296 TTGTTTCTC-TCTTGGT--TCTTGGGTCGAACT-TCCAAACTTGTCAAAAACTTATTTACGTGAG
* * * * *
10313835 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTAT
357 AATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTCTAAAACTTTTACGATTTCTTTTAT
** * *
10313900 AACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTTGAGCAATTTTTCGAACATCCCATG
422 AACTTCGATTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCCATG
* * * * *
10313965 CTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGCCTTTTTGTAAACAAGTTTCGGTCCTCGAA
487 CTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTAGAA
** * * *
10314030 CGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCA
552 TTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCA
*
10314095 AAGACTTATTTATATGAGTACTGTTTCACTCTTGGTTCTT--G-G-A---CGAACTTGTC
617 AAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGGTGAACTTCGAACTTGTC
* **
10314148 AAAAACTTATTTACGT----A--A------CTTGTTTCTTGGACGAACATTAGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTATTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
10314201 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAA-GTATTCAAGTTAATCCATTCCTTCTAGAAA
* * ** *
10314266 TTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAA
130 TTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAACAGTTTGTCATTTTGTAAA
* * ** *
10314331 CTAGTTTTGGCCTTTAAATAAAAAACTTATTTACGTGAGAATTGCATCTCCTTGGTTGTTGGACG
195 CCAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTATTGGACG
10314396 AACTTTCGAACTTGT
260 AACTTTCGAACTTGT
10314411 CAAACTTTCA
Statistics
Matches: 1363, Mismatches: 185, Indels: 155
0.80 0.11 0.09
Matches are distributed among these distances:
657 5 0.00
658 18 0.01
659 70 0.05
660 4 0.00
661 5 0.00
662 37 0.03
663 8 0.01
664 11 0.01
665 7 0.01
666 8 0.01
667 5 0.00
668 1 0.00
672 30 0.02
673 9 0.01
674 7 0.01
675 11 0.01
676 10 0.01
677 39 0.03
678 43 0.03
679 59 0.04
680 907 0.67
681 26 0.02
682 10 0.01
684 20 0.01
685 11 0.01
686 2 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (676 bp):
AAAAACTTATTTACGTAAGAATTATTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
TTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAACAGTTTGTCATTTTGTAAAC
CAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTATTGGACGA
ACTTTCGAACTTGTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGGTCGAACT
TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCC
GAACTTCTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCTGAAAGTATCCAAGATGATCCA
TTCTTTCGAGCAATTTTTTGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTT
GTCTTTTTGTAAACAAGTTTCGGTCCTAGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTC
TTGGTTCTTGGACGAACTTTCGAACTAGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTG
GTTCTTGGGTGAACTTCGAACTTGTC
Found at i:10314013 original size:216 final size:215
Alignment explanation
Indices: 10313639--10314096 Score: 564
Period size: 216 Copynumber: 2.1 Consensus size: 215
10313629 TCCATAGTTG
* * *
10313639 TTGGACGAACATTCGAACATGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCA
1 TTGGACGAAC-TTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGGTCCTGAAAGCA
* * *
10313704 TTCAAGACGATCCATTCCTTTGAGCAAATTTCTAAACATTCCATGCTCGAGAAATCACATCATTT
65 TCCAAGACGATCCATTCCTTTGAGCAAATTTCTAAACATCCCATGCTCGAGAAATCACATAATTT
* * ** *
10313769 GGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-ACT-GTTAATTAATAACTTATTTACGT
130 GGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTCGGTACTCG--AACGAAAAACTTATTTACGT
10313832 GAG-AATTGTTTCTCTCTTGGTTC
193 G-GCAATTGTTTCTCTCTTGGTTC
* * * * *
10313855 TTGGACGAACTTCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTA
1 TTGGACGAACTT-CGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGGTCCTGAAAGCA
* * * * * * * *
10313920 TCCAAGATGATCCATTCTTTTGAGC-AATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATT
65 TCCAAGACGATCCATTCCTTTGAGCAAATTTCT-AAACATCCCATGCTCGAGAAATCACATAATT
* * * *
10313984 TTGTCTAAATAGTTTGCCTTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTG
129 TGGTCAAAATAGTTTGCCATTTTGTAAACAAGTTTCGGTACTCGAACGAAAAACTTATTTACGTG
10314049 GCAATTGTTTCTCTCTTGGTTC
194 GCAATTGTTTCTCTCTTGGTTC
*
10314071 TTGGACAAACTTTCGAACTTGTCAAA
1 TTGGACGAAC-TTCGAACTTGTCAAA
10314097 GACTTATTTA
Statistics
Matches: 206, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
215 9 0.04
216 192 0.93
217 4 0.02
218 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (215 bp):
TTGGACGAACTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGGTCCTGAAAGCAT
CCAAGACGATCCATTCCTTTGAGCAAATTTCTAAACATCCCATGCTCGAGAAATCACATAATTTG
GTCAAAATAGTTTGCCATTTTGTAAACAAGTTTCGGTACTCGAACGAAAAACTTATTTACGTGGC
AATTGTTTCTCTCTTGGTTC
Found at i:10314866 original size:62 final size:62
Alignment explanation
Indices: 10314571--10314880 Score: 467
Period size: 62 Copynumber: 5.0 Consensus size: 62
10314561 GTTAATTAAT
* * ****
10314571 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10314633 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10314695 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10314757 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10314819 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10314881 CTTTTATGAT
Statistics
Matches: 225, Mismatches: 23, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 225 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10315156 original size:54 final size:54
Alignment explanation
Indices: 10315084--10315189 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
10315074 GACGAACTTT
* *
10315084 TGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
1 TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10315138 TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
1 TGAACGTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTG
10315190 AACGAACATC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (54 bp):
TGAACGTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10315490 original size:62 final size:62
Alignment explanation
Indices: 10315364--10315675 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
10315354 CCTTTAAATT
* * * * *
10315364 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10315425 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10315487 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10315549 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10315611 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10315673 AAA
1 AAA
10315676 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
61 28 0.12
62 203 0.88
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10315551 original size:795 final size:790
Alignment explanation
Indices: 10314351--10316210 Score: 2752
Period size: 795 Copynumber: 2.3 Consensus size: 790
10314341 CCTTTAAATA
* *
10314351 AAAAACTTATTTACGTGAGAATTG-CATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGT-AGAATTGTC-TCT-CTTGGTT-TT-GACGAACATTAGAACTTGTCAAA
* * * * * * ***
10314415 CTTTCACGAGTTGTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAA
61 CTTTTACGATTTCTTTTATAACTTCA-GTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCT-A
** * * * * *
10314477 GCAAA--TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATTGTCTGTCATTT
123 G-AAATTTTTTGAAA-ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
10314540 TG-ACCAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTA
186 TGTA--AAA-AAGTTTTGGCCT-TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTG
* * * *
10314603 GTTCTTGGACG--TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
246 GTTGTTGGACGAACTT-T-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAG
*
10314666 TTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTC
309 TTCTTGGACGAACTTTCAAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTC
*
10314731 GTAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
374 GTAGACGAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
10314796 GACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT
439 GACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT
* * *
10314861 GAACATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAG
504 GAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAG
* *
10314926 ATGATCCATTCTTTCGAGCAATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCTA
569 ATGATCCATTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTA
* * **
10314991 AATAGTTTGTCTTTTTGTAAAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTG
634 AATAGTTTGCCTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTG
* *
10315056 GTTCCCTCTTGGTTCTTGGACGAACTTTTGAACGTGTCAAACACTTATTTACATCAGTACTGTTT
699 GTTCCCTCTTGGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTT
*
10315121 CACTCTTGGTTCTTGGATGAACTTGTC
764 CACTCTTGGTTCTTGGACGAACTTGTC
*
10315148 GAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGT-AGAATTG--TCTCTCTTGGTT-TTG-ACGAACAT-TAGAACTTGTCAA
* *
10315212 ACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCTTCTAGA
60 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGA
10315277 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
125 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
10315342 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTTGTTGGA
190 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGA
10315407 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
255 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
* * * * * *
10315472 AC-TTCTAAACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAAC
320 ACTTTC-AAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAAC
*
10315536 ATCCGAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
384 ATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
*
10315601 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAA
449 CAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAA
10315666 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATT
514 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATT
* * *
10315731 CTTTTGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGC
579 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGC
* * *
10315796 CTTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTT
644 CTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTT
* * * *
10315861 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGT
709 GGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGT
10315926 TCTTGGACGAACTTGTC
774 TCTTGGACGAACTTGTC
*
10315943 AAAAACTTATTTACGTA-ACTTGT-T-TCTT-G----GACGAACATTAGAACTTGTCAAACTTTT
1 AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
*
10316000 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
66 ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * *
10316065 TTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAG
131 TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
10316130 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
196 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
10316195 TTCGAACTTGTCAAAA
261 TTCGAACTTGTCAAAA
10316211 TTTCACAAGT
Statistics
Matches: 974, Mismatches: 73, Indels: 47
0.89 0.07 0.04
Matches are distributed among these distances:
781 1 0.00
782 229 0.24
783 1 0.00
788 1 0.00
789 4 0.00
790 1 0.00
791 1 0.00
793 4 0.00
794 4 0.00
795 520 0.53
796 42 0.04
797 34 0.03
798 117 0.12
799 14 0.01
800 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (790 bp):
AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTC
AAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACATCCAAA
CTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTT
GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC
AAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTCGA
GCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTTTTTG
TAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTT
GGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
CGAACTTGTC
Found at i:10316464 original size:62 final size:62
Alignment explanation
Indices: 10316366--10316675 Score: 453
Period size: 62 Copynumber: 5.0 Consensus size: 62
10316356 GTTAATTAAT
* * **
10316366 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10316428 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10316490 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10316552 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * *
10316614 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATT-CGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAAC-TTCCAAACTTGTCAAA
10316676 CTTTTACGAT
Statistics
Matches: 225, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
62 223 0.99
63 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10316956 original size:54 final size:54
Alignment explanation
Indices: 10316879--10316991 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10316869 GACGAACTTT
* * *
10316879 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10316933 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10316987 CGAAC
1 CGAAC
10316992 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10317345 original size:215 final size:217
Alignment explanation
Indices: 10316944--10317440 Score: 567
Period size: 215 Copynumber: 2.3 Consensus size: 217
10316934 GAACTTGTCG
* *
10316944 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * ** * **
10317009 TTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * *
10317074 TTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10317138 ACAAATTTTGGCCCT-TAAATTA
196 ACAAATTTTGG-ACTGTAAATTA
* * * *
10317160 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10317224 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCATGACGATCCATTCCTT-TAAGC
66 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
*
10317287 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10317350 ACCAAACAAGTTTTGGACTGTTAATTA
192 A-CAAACAAATTTTGGACTGTAAATTA
* * * * *** *
10317377 ATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTATCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10317441 AACTTATTTA
Statistics
Matches: 233, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
214 3 0.01
215 127 0.55
216 34 0.15
217 43 0.18
218 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAATTTTGGACTGTAAATTA
Found at i:10317492 original size:62 final size:62
Alignment explanation
Indices: 10317386--10317688 Score: 446
Period size: 62 Copynumber: 4.9 Consensus size: 62
10317376 AATAAGTTAG
* **
10317386 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10317448 TTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10317510 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
10317572 TTACGAGAGAATTGTTTCTCTCTTGGTTGTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10317634 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10317689 CTTTTACGAT
Statistics
Matches: 216, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 215 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10318597 original size:123 final size:124
Alignment explanation
Indices: 10318378--10318686 Score: 469
Period size: 123 Copynumber: 2.5 Consensus size: 124
10318368 GTTAATTAAT
* **
10318378 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACT-TCCAAACTTGTCAAAAA
* * *
10318442 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTTCAAACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10318501 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
10318566 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10318625 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
10318687 CTTTTATGAT
Statistics
Matches: 167, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
123 89 0.53
124 78 0.47
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10318672 original size:62 final size:62
Alignment explanation
Indices: 10318378--10318686 Score: 458
Period size: 62 Copynumber: 5.0 Consensus size: 62
10318368 GTTAATTAAT
* * ****
10318378 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10318440 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10318501 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10318563 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10318625 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10318687 CTTTTATGAT
Statistics
Matches: 224, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
61 54 0.24
62 170 0.76
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10318947 original size:54 final size:54
Alignment explanation
Indices: 10318889--10318994 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
10318879 GGACGAACTT
* *
10318889 TGAACGTGTC-AAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGA
1 TGAACGTGTCGAAA-ACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10318943 TGAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
1 TGAACGTGTCGAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTG
10318995 AACGAACATC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 42 0.93
55 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (54 bp):
TGAACGTGTCGAAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10319240 original size:331 final size:332
Alignment explanation
Indices: 10318498--10319356 Score: 1041
Period size: 331 Copynumber: 2.5 Consensus size: 332
10318488 CAAACTTGTC
* * * *
10318498 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCG-TAGACGAACTTCCAAACTTGTCAA
1 AAAAACTTATTTACATGAGAATTG-TTCTCTCTTGGTT-GTTGGACGAACTTTCGAACTTGTCAA
*
10318562 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTGTCAAAAA
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG----A-AT--AAACTTGTCAAAAA
*
10318627 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTT
122 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * * * *
10318692 ATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTT
187 ACGATTTCTTTTATAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTT
* * ** * * *
10318757 TCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAAAAG
252 TCGAAAATCCTATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
*
10318822 TTTCGGTCCTTGAATT
317 TTTCGGTCCTTAAATT
* * * *
10318838 AAAAACTTATTTACGTG-GCAATTGGTTCCCTCTTGGTTCTTGGACGAACTTT-GAACGTGTCAA
1 AAAAACTTATTTACATGAG-AATT-GTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAA
* * * * * * * *
10318901 ACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGG-ATGAACTTGTCGAAAACTTATTT
64 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAATAAACTTGTCAAAAACTTATTT
* * *
10318965 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCTGAACTTGTCAAACTTTTACGATTT
129 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * *
10319030 CTTTTATAGCTTCAGTTCC-AAAATATATTCAAGTTAATCCATTCCTTCTAGAAATTTTTTGAAA
194 CTTTTATAACTTCAGTTCCTAAAA-ATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAA
* *
10319094 ATTCC-ATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTG
258 A-TCCTATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCG
10319158 G-CCTTTAAATT
322 GTCC-TTAAATT
10319169 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGT-TCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
*
10319233 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTCAAAAAC
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G--GAA----TAAACTTGTCAAAAAC
* * *
10319298 TTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
123 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10319357 AACTTAATTA
Statistics
Matches: 440, Mismatches: 62, Indels: 35
0.82 0.12 0.07
Matches are distributed among these distances:
330 27 0.06
331 251 0.57
332 5 0.01
333 2 0.00
334 1 0.00
335 1 0.00
339 111 0.25
340 41 0.09
341 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (332 bp):
AAAAACTTATTTACATGAGAATTGTTCTCTCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAATAAACTTGTCAAAAACTTATTTAC
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTATAACTTCAGTTCCTAAAAATATCCAAGATAATCCATTCCTTCGAGAAATTTTTCGAAAATC
CTATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTCGGTCC
TTAAATT
Found at i:10319295 original size:62 final size:62
Alignment explanation
Indices: 10319169--10319480 Score: 466
Period size: 62 Copynumber: 5.0 Consensus size: 62
10319159 CCTTTAAATT
* * * * *
10319169 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * **
10319230 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10319292 AAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10319354 AAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
*
10319416 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACAT-CGAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG-AACTTGTC
10319478 AAA
1 AAA
10319481 CTTTTACGAT
Statistics
Matches: 231, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
61 30 0.13
62 201 0.87
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10319364 original size:794 final size:789
Alignment explanation
Indices: 10318158--10320015 Score: 2734
Period size: 794 Copynumber: 2.3 Consensus size: 789
10318148 GCCTTTAAAT
* *
10318158 AAAAACTTATTTACGTGAGAATTG-CATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGT-AGAATTGTC-TCT-CTTGGTT-TT-GACGAACATTAGAACTTGTCAAA
* * * * * * ***
10318222 CTTTCACGAGTTGTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAA
61 CTTTTACGATTTCTTTTATAACTTCA-GTTCC-AAAATGTATTCAAGTTAATCCATTCCTTCT-A
** * * * * *
10318284 GCAAA--TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATTGTCTGTCATTT
123 G-AAATTTTTTGAAA-ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
* * * * *
10318347 TG-ACCAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTA
186 TGTA--AAA-AAGTTTTGGCCT-TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTG
* * * *
10318410 GTTCTTGGACG--TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
246 GTTGTTGGACGAACTT-T-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAG
*
10318473 TTCTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCG
309 TTCTGGACGAACTTTCAAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCG
*
10318538 TAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
374 TAGACGAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
10318603 ACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
439 ACTAACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
* *
10318668 AACATCCG-AACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAG
504 AACAT-CGAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAG
* *
10318732 ATGATCCATTCTTTCGAGCAATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTGGTCTA
568 ATGATCCATTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTA
* * **
10318797 AATAGTTTGTCTTTTTGTAAAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTG
633 AATAGTTTGCCTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTG
*
10318862 GTTCCCTCTTGGTTCTTGGACGAACTTT-GAACGTGTCAAACACTTATTTACATCAGTACTGTTT
698 GTTCCCTCTTGGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTT
*
10318926 CACTCTTGGTTCTTGGATGAACTTGTC
763 CACTCTTGGTTCTTGGACGAACTTGTC
*
10318953 GAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGT-AGAATTG--TCTCTCTTGGTT-TTG-ACGAACAT-TAGAACTTGTCAA
* *
10319017 ACTTTTACGATTTCTTTTATAGCTTCAGTTCCAAAATATATTCAAGTTAATCCATTCCTTCTAGA
60 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGA
10319082 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
125 AATTTTTTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
*
10319147 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTCCTTGGTTGTTGGA
190 AAAAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGA
10319212 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGA
255 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTC-TGGACGA
* * * * * *
10319277 AC-TTCTAAACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAAC
319 ACTTTC-AAACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAAC
*
10319341 ATCCGAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
383 ATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
*
10319406 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCGAA
448 CAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCGAA
10319471 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATT
513 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATT
* * *
10319536 CTTTTGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGC
578 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGC
* * *
10319601 CTTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGTTTCTCTCTT
643 CTTTTTGTAAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTT
* * * *
10319666 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGTTTCACTCTTGGT
708 GGTTCTTGGACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGT
10319731 TCTTGGACGAACTTGTC
773 TCTTGGACGAACTTGTC
*
10319748 AAAAACTTATTTACGTA-ACTTGT-T-TCTT-G----GACGAACATTAGAACTTGTCAAACTTTT
1 AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
*
10319805 ACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
66 ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* * *
10319870 TTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTCTAAACAAG
131 TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
10319935 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
196 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
10320000 TTCGAACTTGTCAAAA
261 TTCGAACTTGTCAAAA
10320016 TTTCACAAGT
Statistics
Matches: 973, Mismatches: 71, Indels: 51
0.89 0.06 0.05
Matches are distributed among these distances:
781 1 0.00
782 229 0.24
783 1 0.00
788 1 0.00
789 4 0.00
790 1 0.00
791 1 0.00
793 71 0.07
794 425 0.44
795 107 0.11
796 117 0.12
797 14 0.01
798 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (789 bp):
AAAAACTTATTTACGTAGAATTGTCTCTCTTGGTTTTGACGAACATTAGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCAGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
TTGAAAATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAG
TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACT
TTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTGGACGAACTTTCA
AACTTGTCAAAAACTTAATTACATGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACATCCAAAC
TTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCAAACTTG
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCGAAACTTGTCA
AACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAG
CAATTTTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTTTTTGT
AAAAAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCCCTCTTGGTTCTTG
GACAAACTTTCGAACGTGTCAAACACTTATTTACATCAGTACTGTTTCACTCTTGGTTCTTGGAC
GAACTTGTC
Found at i:10320269 original size:62 final size:63
Alignment explanation
Indices: 10320171--10320464 Score: 360
Period size: 62 Copynumber: 4.6 Consensus size: 63
10320161 GTTAATTAAT
* * *
10320171 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGATTCGTCCAAACTTGTCAAA
* * * *
10320233 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGATTCGTCCAAACTTGTCAAA
**
10320295 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTACGAACTTCCAAACTTG
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACG-A-TT-CG----TCCAAACTTG
10320360 TCAAA
59 TCAAA
* * * * * * *
10320365 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTA-ACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGATTCGTCCAAACTTGTCAAA
10320427 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10320465 GAATGAACAT
Statistics
Matches: 200, Mismatches: 23, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
62 144 0.72
63 1 0.00
66 2 0.01
69 1 0.00
70 52 0.26
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (63 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGATTCGTCCAAACTTGTCAAA
Found at i:10320464 original size:132 final size:124
Alignment explanation
Indices: 10320171--10320464 Score: 435
Period size: 132 Copynumber: 2.3 Consensus size: 124
10320161 GTTAATTAAT
* *
10320171 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGTTTGTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGTTCGTCCAAACTTGTCAAAAAC
* * *
10320236 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTTTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCAAA
*
10320295 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTACGAACTTCCAAACTTG
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG---TT-CG----TCCAAACTTG
* *
10320360 TCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCA
58 TCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCA
10320425 AA
123 AA
*
10320427 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
10320465 GAATGAACAT
Statistics
Matches: 152, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
124 41 0.27
127 2 0.01
128 1 0.01
132 108 0.71
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGTTCGTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTCAAA
Found at i:10320465 original size:62 final size:62
Alignment explanation
Indices: 10320345--10320488 Score: 227
Period size: 62 Copynumber: 2.3 Consensus size: 62
10320335 ACGAACTTAC
* *
10320345 GAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT
1 GAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GAAT
* * *
10320408 -AACATCCGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAT
1 GAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAT
10320469 GAACATCCAAACTTGTCAAA
1 GAACATCCAAACTTGTCAAA
10320489 CTTTTACGAT
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
61 3 0.04
62 70 0.96
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (62 bp):
GAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAT
Found at i:10320769 original size:54 final size:54
Alignment explanation
Indices: 10320692--10320804 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
10320682 GACGAACTTT
* * *
10320692 CGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
* * * * *
10320746 CGAACTTGTCGAAA-ATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
10320800 CGAAC
1 CGAAC
10320805 ATCCGAACTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 47 0.94
55 3 0.06
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTATTTCACTCTTGGTTCTTGGA
Found at i:10321158 original size:215 final size:217
Alignment explanation
Indices: 10320757--10321253 Score: 567
Period size: 215 Copynumber: 2.3 Consensus size: 217
10320747 GAACTTGTCG
* *
10320757 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * ** * **
10320822 TTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * *
10320887 TTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10320951 ACAAATTTTGGCCCT-TAAATTA
196 ACAAATTTTGG-ACTGTAAATTA
* * * *
10320973 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10321037 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCATGACGATCCATTCCTT-TAAGC
66 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
*
10321100 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10321163 ACCAAACAAGTTTTGGACTGTTAATTA
192 A-CAAACAAATTTTGGACTGTAAATTA
* * * * *** *
10321190 ATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTATCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10321254 AACTTATTTA
Statistics
Matches: 233, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
214 3 0.01
215 127 0.55
216 34 0.15
217 43 0.18
218 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAATTTTGGACTGTAAATTA
Found at i:10321305 original size:62 final size:62
Alignment explanation
Indices: 10321199--10321501 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10321189 AATAAGTTAG
* **
10321199 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10321261 TTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10321323 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10321385 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10321447 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10321502 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10322290 original size:62 final size:62
Alignment explanation
Indices: 10322192--10322501 Score: 433
Period size: 62 Copynumber: 5.0 Consensus size: 62
10322182 GTTAATTAAT
* * * **
10322192 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10322254 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10322316 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10322378 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10322440 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10322502 CTTTTACGAT
Statistics
Matches: 224, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 223 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10322543 original size:1000 final size:1000
Alignment explanation
Indices: 10318954--10339974 Score: 31637
Period size: 1000 Copynumber: 20.8 Consensus size: 1000
10318944 GAACTTGTCG
* * * * *
10318954 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAACGAAC-ATCTGAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTC-GAACTTGTCAAA
* * * * * * ** ****
10319018 CTTTTACGATTTCTTTTATAGCTTCA-GTTCC-AAAATATATTCAAGTTAATCCATTCCTTCT-A
64 ATTTCACGAGTTCTTTTATAAC-TGAGGTTCCTTAAA-GCATTCAAAACGATCCATTCCTT-TAA
** * * * * ***
10319080 G-AAATTTTTTGAAA-ATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT-AGTTTGTCATT
126 GCAAA--TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATT
* * * * *
10319142 TTGTA--AAA-AAGTTTTGGCCT-TTAAATTAAAAACTTATTTACATGAGAATTGTATCTC-CTT
188 TTG-ACCAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTT
* * * * *
10319202 GGTTGTTGGACGAACTT-T-CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA
251 AGTTCTTGGACG--TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* * * *
10319265 GTTCTTGGACGAACTTCTAAACTTGTCAAAAACTTAATTACGTGTGAATTGTTTCTCTCTTGGTT
314 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTT
* * * *
10319330 CTTGGACTAACATCCGAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTT
379 CTTAGACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10319395 GGACTAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
444 GGACTAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
10319460 TGAACAT-CGAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGGTCCTGAAAGTATCCA
509 TGAACATCCG-AACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCA
*
10319524 AGATGATCCATTCTTTTGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTC
573 AGATGATCCATTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTC
* *
10319589 TAAATAGTTTGCCTTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAAT
638 TAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAAT
* * *
10319654 TGTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGAGTACTGT
703 TGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGT
10319719 TTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAAC
768 TTCACTCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAAC
**
10319784 ATTAGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
10319849 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
898 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
*
10319914 GTTTGTCATTTTCTAAACAAGTTTTGGCCTTTAAATTA
963 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
10319952 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10320017 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
*
10320082 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10320147 ACAAGTTTTGGATTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10320212 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10320277 ACTTCCAAACTTTTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT--A-G----
10320342 TACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
384 -ACGAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* *
10320407 TAACATCCGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAA
448 TAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
*
10320472 CATCCAAACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATG
513 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATG
* *
10320537 ATCCATTCTTTCGAGCAATTGTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAAT
578 ATCCATTCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAAT
* * *
10320602 AGTTTGTCTTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTT
643 AGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTT
* * * * *
10320667 CCCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACTATTTCAC
708 CTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCAC
* * * *
10320732 TCTTGGTTCTTTGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT
773 TCTTGGTTCTTGGACGAACTTGTCAAAAACTTATTTACGT---AA----------CTTGTTTCTT
*
10320797 GGACGAACATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATT
825 GGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATT
* *
10320862 CAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGG
890 CAAGTTAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGG
* *
10320927 TCTAAATAGTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
955 TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10320973 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10321038 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10321103 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10321167 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10321232 ACGTTTATCCAAACTTGTCAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10321297 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10321362 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10321427 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10321492 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10321557 CTTTCGAGCAATTGTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
*
10321622 CTTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
**
10321687 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGTCTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10321752 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10321817 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10321882 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10321947 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10321973 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10322038 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10322103 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10322168 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10322233 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10322298 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10322363 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
*
10322428 GAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
10322493 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
*
10322558 TTTCGAGCAATTGTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
*
10322623 TTTTTGTAAACAAGTTTCGGTCCTCGAACGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
*
10322688 GTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
10322753 CTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGTC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGTC
10322818 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTA
846 AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTA
*
10322883 GAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTTG
911 GAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG
*
10322948 TAAACAAGTTTTGGCCTTTAAA-TG
976 TAAACAAGTTTTGGCCTTTAAATTA
* * *
10322972 AAAACTTATTTATGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCAAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10323037 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
** **
10323102 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGTTTGTC-ATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
10323166 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10323231 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10323296 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10323361 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
*
10323426 GAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
* *
10323491 CTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* * *
10323556 TTTCGAGCAATTTTTCGAACATCCTATGCTTGGGAAGTCGCATAATTTTGTCTAAATAGTTTGTC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10323621 TTTTTGTAAAAAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
*
10323686 GTTCTTGGACGAACTTT-GAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * *
10323750 CTTGGATGAACTTGTCGAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA----------CTTGTTTCTTGGACGAAC
* * * * *
10323815 ATCCGAACTTGTCAAACTTTTTCGATTTCTTTTACAACTTCGGTTCCTAAAA-GTATCCAAGATG
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAATGTATTCAAGTTA
* * * * * * * *
10323879 ATCCATT-CTTCGAGCAATTGTTCGAACA-TCCTATGCTC-AGGAAGTCGCATAATTTGGTCTAA
897 ATCCATTCCTTCTAGAAATTTTTTGAACATTCC-ATGCTCGA-AAAATCCCATCATTTGGTCTAA
* *
10323941 ATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCC-TTGAATTAA
960 ATAGTTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAAATT-A
* * *
10323983 AAAACTTATGTACGTG-GAAATTGGT-TCT-CTGTATGTTCTTGGACGAACTTTCGAACTTGTCA
1 AAAACTTATTTACGTGAG-AATT-GTATCTCCT-T-GGTTGTTGGACGAACTTTCGAACTTGTCA
* * * * * *
10324045 CAGACTTATTTACATGAGTACTGTTT-CACCAT-TGGTT-CTTGGACGAA-CTTGTCGAAAAC--
62 -A-A---ATTT-CACGAGTTCT-TTTATAAC-TGAGGTTCCTT--A--AAGCAT-TC-AAAACGA
* * * * *
10324104 T-TATTTAC-GTAAG--AATTGT-------TTCTC-T-CTTG-G---T----TC--TTGGACGAA
113 TCCA-TTCCTTTAAGCAAATT-TCCAAACATTC-CATGCTCGAGAAATCACATCATTTGGTC-AA
* * * * * ** * * ***
10324146 CAT-TCGAAC----TTG-TCAAAC---TTTTATGA-T-TTCTTTTATAACTTCAGTTCCAAAAAG
174 AATGACTAACTATTTTGACCAAACAAGTTTT-GGACTGTTAATTAATAACTT-AGTTAC-GTGAG
* ** * **
10324200 TAATAAAGTTAATC-C--A-TTCCTTTGAGCAAATT-TCCAAACATTCCACGCTCGAGAAATCAC
236 -AAT--TGTTTCTCTCTTAGTT-CTTGGA-C-GTTTGTCCAAAC-TT----G-TC-A-AAA--AC
* * * * * * * * *** * **** *
10324260 ATCATTT-GGTCAAAATAGTTTGTCAT-TTTG-AC-CAAAC-AAGTTTTGGAC-TGTTAATTAAT
285 -TTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCCAAACTTG-TCA--AA-
* * * *
10324319 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
344 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10324384 TTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
409 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
* *
10324449 ATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAAAAACTTAAT
474 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTC--AAACTT--T
* * * * * ** * *
10324513 TACGTGAGAATTGTTTCT-C-TCTT-GGTTCTTGGACTAA-CATCCGAACTTG-TCAAAAACTTA
534 TAC----GATTTCTTT-TACAACTTCGGTTCCT-GA--AAGTATCC-AAGATGATC---CA-TTC
* *** * * * * *
10324573 TTTACGTGAG-AATTGTTTC--TC-TCTTGGTTCTTGGATGAACATC-CA-AA-CTTGTC-AAAC
586 TTT-C--GAGCAATT-TTTCGAACATC-CCATGCTCGG--GTA-GTCGCATAATTTTGTCTAAA-
* *
10324630 T--TTTACGAT-TTCTTT-TATAAC----TTCGGTCCT-GAAAGTATCCAAGATGATCCATTCTT
642 TAGTTT--G-TCTT-TTTGTA-AACAAGTTTCGGTCCTCGAATG-A---AA-A--A--C-TTATT
* * *** * * ** * ** * * *
10324686 T---TGAGCAATT-TTTCGAACATC-CCATGCTCGG--GTAGTCGCATAATTTTGTCTAA-A--T
692 TACGTG-GCAATTGGTTC--TC-TCTTGGTTCTTGGACAAACTTTC-GAA-CTTGTCAAACACTT
* * ** ** * *
10324741 AGTTTGCCT---TTTTGTAAACAAGT-TTCGG-TCCT---C-AAC--G--AAAAACTTATTTACG
751 A-TTTACATGAGTACTGT-TTC-ACTCTT-GGTTCTTGGACGAACTTGTCAAAAACTTATTTACG
* * * * *
10324793 TGGCAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTATATGA
812 T---AA----------CTTGTTTCTTGGACGAACATCCGAACTTGTC-AA-AC---TTT-TACGA
* * * * * ** ** * * * **
10324858 GTACTGTT-TCACTCTTGGTTCTTGGACGAACTTGTCA-AAAACTTATTTACGTAACTTGTTTCT
858 TTTCTTTTATAACT-TCGGTTC-----C-AAAATGT-ATTCAAGTTA-AT-C--CA-TTCCTTC-
* ** * * * ** **** *** * * *
10324921 TGGACGAA-CATTAGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA-ATGT
909 TAGA--AATTTTTTGAACAT-TC-CA-TGCT-CGAAAAATCCCATCA-TTTGG-TCTAAATA-GT
* ** ** * **
10324984 ATTCAAGTTAATCCATTCCTTCTAGAA-ATTTTTTGAACATTCCATGCTCGA
965 -TT---G----T-CATT--TTGTA-AACAAGTTTTGGCCTTTAAAT--T--A
* * * * * * ** * * * *
10325035 AAAATCCCATCATTT-GGTCTAAATAGTTTGTCATTTTCTAAACAAGTT-TTGGCCTTTAAATTA
1 AAAA---C-TTATTTACGT-GAGA-A--TTGT-ATCTCCT----TGGTTGTTGGAC--GAACTTT
** * * ** ***** * * ** *
10325098 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
51 CGAAC----TT--GTCAAAATTTCACGAGTTC--TT-TT--A-TAAC--T-G-AGGT-TC----C
* * * *
10325163 TTCACAAGTTCTTTTATAACTGAGGTTCC-TTAAAGCATTCAAAACGATCCATTCCTTTAAGCAA
95 TT-A-AAG--CATTCAAAAC-GA---TCCATT----CCTT------------------TAAGCAA
* *
10325227 ATTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCA
130 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCA
* *
10325292 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
10325357 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
10325422 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
10325487 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
*
10325552 CGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
*
10325617 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
* *
10325682 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTAT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* * *
10325747 CTTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
* * * **
10325812 GGTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
* * * *
10325877 TCTTTGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGT---AA--------CT-TGT-TTCTTGGACGAA
*
10325942 CATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTA
832 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTA
* *
10326007 ATCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAAT
897 ATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
* *
10326072 AGTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
962 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10326111 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10326176 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10326241 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10326305 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10326370 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10326435 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10326500 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10326565 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10326630 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10326695 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10326760 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10326825 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10326890 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10326955 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10327020 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10327085 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10327111 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10327176 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10327241 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10327306 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10327371 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10327436 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10327501 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
10327566 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10327631 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* *
10327696 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTATC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10327761 TTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
* * * **
10327826 GTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * * *
10327891 CTTCGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA--------CT-TGT-TTCTTGGACGAAC
*
10327956 ATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
* *
10328021 TCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATA
898 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
* *
10328086 GTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
963 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10328124 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10328189 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10328254 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10328318 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10328383 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10328448 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10328513 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10328578 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10328643 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10328708 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10328773 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10328838 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10328903 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10328968 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10329033 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10329098 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10329124 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10329189 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10329254 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10329319 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10329384 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10329449 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10329514 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
10329579 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10329644 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* *
10329709 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTATC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10329774 TTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
* * * **
10329839 GTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * * *
10329904 CTTCGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA--------CT-TGT-TTCTTGGACGAAC
*
10329969 ATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
* *
10330034 TCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATA
898 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
* *
10330099 GTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
963 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10330137 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10330202 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10330267 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10330331 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10330396 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10330461 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10330526 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10330591 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10330656 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10330721 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10330786 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10330851 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10330916 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10330981 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10331046 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10331111 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10331137 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10331202 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10331267 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10331332 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10331397 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10331462 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10331527 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
*
10331592 GAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10331657 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* *
10331722 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTATC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10331787 TTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
* * * **
10331852 GTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * * *
10331917 CTTCGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA--------CT-TGT-TTCTTGGACGAAC
*
10331982 ATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
* *
10332047 TCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATA
898 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
* *
10332112 GTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
963 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10332150 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10332215 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10332280 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10332344 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10332409 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10332474 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10332539 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10332604 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10332669 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10332734 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10332799 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10332864 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10332929 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10332994 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10333059 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10333124 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10333150 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10333215 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10333280 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10333345 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10333410 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10333475 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10333540 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
10333605 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10333670 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* *
10333735 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTATC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10333800 TTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
* * * **
10333865 GTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * * *
10333930 CTTCGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAAC
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA--------CT-TGT-TTCTTGGACGAAC
*
10333995 ATCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
833 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAA
* *
10334060 TCCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATA
898 TCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATA
* *
10334125 GTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
963 GTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10334163 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10334228 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10334293 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10334357 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10334422 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10334487 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10334552 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10334617 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10334682 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10334747 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10334812 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10334877 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10334942 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10335007 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10335072 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10335137 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10335163 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10335228 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10335293 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
* *
10335358 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10335423 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10335488 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10335553 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
10335618 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10335683 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
* *
10335748 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTTGTCGCATAATTTTGTCTAAATAGTTTATC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* * *
10335813 TTTTTGTAAGCAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
* * * **
10335878 GTTCTTGGACGAACTTTCGAACTTGTCAAACACTTCTTTACATGAGAACAATTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
* * * *
10335943 CTTTGACGAACTTGTCGAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGTTCTTGGACGAACA
781 CTTGGACGAACTTGTCAAAAACTTATTTACGT---AA------CT-T-GT-TTCTTGGACGAACA
*
10336008 TCCGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAAT
834 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAAT
* *
10336073 CCATTCCTTCTAGAAATTTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAG
899 CCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAG
* *
10336138 TTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
964 TTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10336175 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
**
10336240 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCATGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* * ***
10336305 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTGAAAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
*
10336369 AACAAGTTTTGGACTGTTAATTAATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
10336434 ACGTTTATCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10336499 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
*
10336564 TTCCAACCTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
* *
10336629 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10336694 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
*
10336759 CTTTCGAGCAATTATTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10336824 CTTTTTGTAAACAAGTTTCGGTCCTCTAAGGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10336889 GGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
*
10336954 TCTTGGATGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGT
10337019 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
10337084 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10337149 CTAAACAAGTTTTGGCCTTTAAATTA
975 GTAAACAAGTTTTGGCCTTTAAATTA
10337175 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10337240 TTCACAAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* *
10337305 TTTCCAAACATTCCATGCTCGCGAAATCACATCATTTGGTCAAAATGACAAACTATTTTGACCAA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
*
10337370 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
10337435 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10337500 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACT
326 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
10337565 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
391 TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
10337630 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
456 GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
10337695 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
521 CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
10337760 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
586 TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
* *
10337825 TTTTTGTAAACAAGTTTCGGTCCT-TAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
651 TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
10337889 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
716 GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
10337954 CTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTTCTTGGACGAACATCCGAACTTGT
781 CTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTG-TTTCTTGGACGAACATCCGAACTTGT
10338019 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
845 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCT
*
10338084 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTTTAAATAGTTTGTCATTTT
910 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10338149 GTAAACAAGTTTTGG-CTTTAAATAA
975 GTAAACAAGTTTTGGCCTTTAAATTA
*
10338174 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10338239 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* ***
10338304 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTC-AAAT-AGTTTGTCATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACT-ATTTTGACCA
10338367 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
10338432 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10338497 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
325 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC
10338562 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
390 TTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
10338627 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
455 CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGA
10338692 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
520 ACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATT
10338757 CTTTCGAGCAATTTTT-GAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
585 CTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGT
* *
10338821 CTTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
650 CTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
*
10338886 GGTTCTTGGACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
715 GGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGT
* * * *
10338951 TCTTTGACGAACTTGTCGAAAACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
780 TCTTGGACGAACTTGTCAAAAACTTATTTACGT---AA----------CTTGTTTCTTGGACGAA
10339016 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTA
832 CATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTA
10339081 ATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
897 ATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAAT
* *
10339146 AGTTTGTCATTTTGTAAACAAATTTTGGCCCTTAAATTA
962 AGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
*
10339185 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
*
10339250 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAAA
66 TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
* ** **
10339315 TTTCCAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATTGTTTGTC-ATTTTGACCA
131 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAA-TGACTAACTATTTTGACCA
10339379 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
**
10339444 ACGAACT-TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC
260 ACG-TTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
10339506 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGATGAA
324 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAA
*
10339571 CTTCAAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACAT
389 CTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACAT
10339636 CCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCG
454 CCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCG
*
10339701 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCAT
519 AACTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCAT
10339766 TCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTG
584 TCTTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTG
* * *
10339831 TCTTTTTGTAAACAAGTTTCGGTCCTCAAACGATAAACTTATTTACGTGGCAATTGGTTCTCTCT
649 TCTTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCT
* * * * * * * * *
10339896 TGGTTCTTGGACGAACTTCCAAACTTG-CAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTAG
714 TGGTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGG
*
10339960 TTCTTAGACGAACTT
779 TTCTTGGACGAACTT
10339975 CCAAACTTGT
Statistics
Matches: 18362, Mismatches: 1186, Indels: 938
0.90 0.06 0.05
Matches are distributed among these distances:
992 11 0.00
993 12 0.00
994 10 0.00
995 11 0.00
996 20 0.00
997 268 0.01
998 1123 0.06
999 529 0.03
1000 6990 0.38
1001 35 0.00
1002 22 0.00
1003 18 0.00
1004 3 0.00
1005 185 0.01
1006 8 0.00
1007 6 0.00
1008 404 0.02
1009 82 0.00
1010 604 0.03
1011 365 0.02
1012 1167 0.06
1013 4855 0.26
1014 16 0.00
1015 10 0.00
1016 7 0.00
1017 26 0.00
1018 51 0.00
1019 28 0.00
1020 26 0.00
1021 559 0.03
1022 15 0.00
1023 13 0.00
1024 19 0.00
1025 2 0.00
1026 1 0.00
1028 1 0.00
1029 2 0.00
1030 3 0.00
1031 4 0.00
1032 6 0.00
1033 2 0.00
1034 6 0.00
1035 4 0.00
1036 6 0.00
1037 8 0.00
1038 14 0.00
1039 2 0.00
1040 3 0.00
1041 1 0.00
1042 3 0.00
1046 3 0.00
1047 5 0.00
1048 2 0.00
1049 15 0.00
1050 2 0.00
1051 4 0.00
1052 6 0.00
1054 2 0.00
1055 5 0.00
1056 5 0.00
1057 9 0.00
1058 2 0.00
1059 4 0.00
1060 2 0.00
1061 2 0.00
1062 5 0.00
1063 10 0.00
1064 12 0.00
1065 9 0.00
1066 3 0.00
1068 8 0.00
1069 4 0.00
1070 5 0.00
1071 2 0.00
1072 7 0.00
1073 3 0.00
1074 1 0.00
1075 1 0.00
1076 5 0.00
1078 3 0.00
1079 7 0.00
1080 18 0.00
1081 3 0.00
1082 4 0.00
1083 1 0.00
1084 2 0.00
1085 1 0.00
1087 1 0.00
1090 2 0.00
1091 7 0.00
1092 5 0.00
1093 6 0.00
1094 2 0.00
1096 4 0.00
1097 7 0.00
1098 3 0.00
1099 5 0.00
1100 1 0.00
1102 1 0.00
1103 9 0.00
1104 24 0.00
1105 10 0.00
1106 17 0.00
1107 19 0.00
1108 20 0.00
1109 24 0.00
1110 26 0.00
1111 12 0.00
1112 13 0.00
1113 10 0.00
1114 23 0.00
1115 12 0.00
1116 48 0.00
1117 1 0.00
1118 4 0.00
1120 7 0.00
1121 7 0.00
1122 184 0.01
1123 3 0.00
1124 7 0.00
1125 13 0.00
1126 13 0.00
1127 1 0.00
1130 8 0.00
1131 10 0.00
1132 11 0.00
1133 11 0.00
1134 12 0.00
1135 11 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (1000 bp):
AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAAT
TTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTTAAGCAAA
TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATGACTAACTATTTTGACCAA
ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
CGTTTGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACT
TCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCC
GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
CTTGTCAAACTTTTACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTC
TTTCGAGCAATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTC
TTTTTGTAAACAAGTTTCGGTCCTCGAATGAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTG
GTTCTTGGACAAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTT
CTTGGACGAACTTGTCAAAAACTTATTTACGTAACTTGTTTCTTGGACGAACATCCGAACTTGTC
AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTA
GAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGGCCTTTAAATTA
Found at i:10323267 original size:62 final size:62
Alignment explanation
Indices: 10323190--10323499 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
10323180 GTTAATTAAT
* * **
10323190 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10323252 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10323314 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCGTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
10323376 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10323438 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10323500 CTTTTATGAT
Statistics
Matches: 228, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
62 227 1.00
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10323745 original size:61 final size:60
Alignment explanation
Indices: 10323680--10323831 Score: 165
Period size: 54 Copynumber: 2.6 Consensus size: 60
10323670 AATTGGTTCT
* *
10323680 CTCTTGGTTCTTGGACGAACTTTGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC-TTGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCA
* * *
10323741 CTCTTGGTTCTT-G--G-A--TGAACTTGTCGAAA-ACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTGAACTTGTC-AAACACTTATTTACATAAGAACTGTTTCA
*
10323795 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 CTCTTGGTTCTTGGACGAAC-T-TGAACTTGTCAAAC
10323832 TTTTTCGATT
Statistics
Matches: 75, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
54 42 0.56
55 4 0.05
57 2 0.03
58 2 0.03
60 1 0.01
61 15 0.20
62 9 0.12
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (60 bp):
CTCTTGGTTCTTGGACGAACTTGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCA
Found at i:10324124 original size:54 final size:54
Alignment explanation
Indices: 10324034--10324146 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
10324024 GACGAACTTT
* * *
10324034 CGAACTTGTCACAGACTTATTTACATGAGTACTGTTTCAC-CATTGGTTCTTGGA
1 CGAACTTGTCACAAACTTATTTACATAAGAACTGTTTCACTC-TTGGTTCTTGGA
* * *
10324088 CGAACTTGTCGA-AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-ACAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10324142 CGAAC
1 CGAAC
10324147 ATTCGAACTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
54 49 0.96
55 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
CGAACTTGTCACAAACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10324416 original size:62 final size:62
Alignment explanation
Indices: 10324319--10324628 Score: 503
Period size: 62 Copynumber: 5.0 Consensus size: 62
10324309 GTTAATTAAT
* * *
10324319 AACTTAATTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10324381 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10324443 AACTTAATTACGTGTGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10324505 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10324567 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
1 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10324629 CTTTTACGAT
Statistics
Matches: 234, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 234 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10325415 original size:62 final size:62
Alignment explanation
Indices: 10325317--10325626 Score: 433
Period size: 62 Copynumber: 5.0 Consensus size: 62
10325307 GTTAATTAAT
* * * **
10325317 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10325379 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10325441 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10325503 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10325565 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10325627 CTTTTACGAT
Statistics
Matches: 224, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 223 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10326443 original size:62 final size:62
Alignment explanation
Indices: 10326337--10326639 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10326327 AATAAGTTAG
* **
10326337 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10326399 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10326461 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10326523 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10326585 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10326640 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10327428 original size:62 final size:62
Alignment explanation
Indices: 10327330--10327639 Score: 451
Period size: 62 Copynumber: 5.0 Consensus size: 62
10327320 GTTAATTAAT
* * * **
10327330 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10327392 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10327454 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10327516 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10327578 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10327640 CTTTTACGAT
Statistics
Matches: 228, Mismatches: 19, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
62 227 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10328456 original size:62 final size:62
Alignment explanation
Indices: 10328350--10328652 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10328340 AATAAGTTAG
* **
10328350 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10328412 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10328474 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10328536 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10328598 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10328653 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10329441 original size:62 final size:62
Alignment explanation
Indices: 10329343--10329652 Score: 442
Period size: 62 Copynumber: 5.0 Consensus size: 62
10329333 GTTAATTAAT
* * * **
10329343 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10329405 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10329467 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10329529 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10329591 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10329653 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 225 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10330469 original size:62 final size:62
Alignment explanation
Indices: 10330363--10330665 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10330353 AATAAGTTAG
* **
10330363 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10330425 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10330487 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10330549 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10330611 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10330666 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10331454 original size:62 final size:62
Alignment explanation
Indices: 10331356--10331665 Score: 433
Period size: 62 Copynumber: 5.0 Consensus size: 62
10331346 GTTAATTAAT
* * * **
10331356 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10331418 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10331480 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * * *
10331542 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10331604 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10331666 CTTTTACGAT
Statistics
Matches: 224, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 223 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10332482 original size:62 final size:62
Alignment explanation
Indices: 10332376--10332678 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10332366 AATAAGTTAG
* **
10332376 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10332438 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10332500 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10332562 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10332624 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10332679 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10333467 original size:62 final size:62
Alignment explanation
Indices: 10333369--10333678 Score: 442
Period size: 62 Copynumber: 5.0 Consensus size: 62
10333359 GTTAATTAAT
* * * **
10333369 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10333431 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10333493 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10333555 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10333617 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10333679 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 225 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10334495 original size:62 final size:62
Alignment explanation
Indices: 10334389--10334691 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10334379 AATAAGTTAG
* **
10334389 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10334451 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10334513 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10334575 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10334637 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10334692 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10335480 original size:62 final size:62
Alignment explanation
Indices: 10335382--10335691 Score: 442
Period size: 62 Copynumber: 5.0 Consensus size: 62
10335372 GTTAATTAAT
* * * **
10335382 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10335444 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* **
10335506 AACTTATTTACGTGAGAATTATTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10335568 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10335630 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10335692 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 225 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10336340 original size:215 final size:216
Alignment explanation
Indices: 10335960--10336455 Score: 556
Period size: 215 Copynumber: 2.3 Consensus size: 216
10335950 GAACTTGTCG
* *
10335960 AAAATTTATTTACGTAAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCGAACTTGTCAAACT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCGAACTTGTCAAACT
* * * ** * **
10336025 TTTATGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAAT
66 TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
*** * * * *
10336090 TTTTTGAACATTCCTTGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAA
131 TTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
*
10336154 CAAATTTTGGCCCT-TAAATTA
196 CAAATTTTGG-ACTGTAAATTA
* * * *
10336175 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10336239 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCATGACGATCCATTCCTT-TAAGC
65 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
*
10336302 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
127 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10336365 ACCAAACAAGTTTTGGACTGTTAATTA
191 A-CAAACAAATTTTGGACTGTAAATTA
* * * *** *
10336392 ATAAGTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGTTTATCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGACGAACATCCGAACTTGTCAAA
10336456 AACTTATTTA
Statistics
Matches: 232, Mismatches: 40, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
214 6 0.03
215 149 0.64
216 8 0.03
217 43 0.19
218 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTCTTGGACGAACATCCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
CAAATTTTGGACTGTAAATTA
Found at i:10336507 original size:62 final size:62
Alignment explanation
Indices: 10336401--10336703 Score: 464
Period size: 62 Copynumber: 4.9 Consensus size: 62
10336391 AATAAGTTAG
* **
10336401 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTATCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAAACTTAT
*
10336463 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
10336525 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAACCTTGTCAAAAACTTAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10336587 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
10336649 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACATCCAAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10336704 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
62 219 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:10337492 original size:62 final size:62
Alignment explanation
Indices: 10337394--10337703 Score: 460
Period size: 62 Copynumber: 5.0 Consensus size: 62
10337384 GTTAATTAAT
* * **
10337394 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACT-TCCAAACTTGTCAAA
*
10337456 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
**
10337518 AACTTATTTACGTGAGAATTGTTTCTCTCTTAATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * * *
10337580 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * * *
10337642 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
10337704 CTTTTACGAT
Statistics
Matches: 229, Mismatches: 18, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
62 228 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:10338490 original size:62 final size:62
Alignment explanation
Indices: 10338392--10338701 Score: 487
Period size: 62 Copynumber: 5.0 Consensus size: 62
10338382 GTTAATTAAT
* * **
10338392 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG-TTTGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAA
10338454 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10338516 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10338578 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10338640 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10338702 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
62 231 1.00
63 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10338981 original size:54 final size:54
Alignment explanation
Indices: 10338904--10339016 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
10338894 GACGAACTTT
* * *
10338904 CGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTTGA
1 CGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
* * * *
10338958 CGAACTTGTCGAAA-ACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
1 CGAACTTGTC-AAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
10339012 CGAAC
1 CGAAC
10339017 ATCCGAACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 48 0.94
55 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (54 bp):
CGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCACTCTTGGTTCTTGGA
Found at i:10339350 original size:215 final size:217
Alignment explanation
Indices: 10338969--10339465 Score: 628
Period size: 215 Copynumber: 2.3 Consensus size: 217
10338959 GAACTTGTCG
* * *
10338969 AAAACTTTTTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * ** * **
10339034 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
*** * * * *
10339099 TTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
131 TTTTCCAAACATTCCATGCTAGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10339163 ACAAATTTTGGCCCT-TAAATTA
196 ACAAATTTTGG-ACTGTAAATTA
* * *
10339185 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* *
10339249 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTCAAGACGATCCATTCCTT-TAAGC
66 TTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGACAATCCATTCCTTCT-AG-
* *
10339312 AAA-TTTCCAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGA
128 AAATTTTCCAAACATTCCATGCTAGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
* *
10339376 CCAAACAAGTTTTGGACTGTTAATTA
193 -CAAACAAATTTTGGACTGTAAATTA
* * * *
10339402 ATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10339466 AACTTATTTA
Statistics
Matches: 240, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 131 0.55
216 34 0.14
217 44 0.18
218 30 0.12
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (217 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTAGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAATTTTGGACTGTAAATTA
Found at i:10339478 original size:62 final size:62
Alignment explanation
Indices: 10339404--10339711 Score: 485
Period size: 62 Copynumber: 5.0 Consensus size: 62
10339394 GTTAATTAAT
* *
10339404 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10339466 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10339526 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGATGAACTTCAAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10339588 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10339650 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10339712 CTTTTACGAT
Statistics
Matches: 227, Mismatches: 17, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
60 57 0.25
61 4 0.02
62 166 0.73
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10339975 original size:401 final size:400
Alignment explanation
Indices: 10339463--10340451 Score: 1547
Period size: 401 Copynumber: 2.5 Consensus size: 400
10339453 CAAACTTGTC
10339463 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10339526 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGATGAACTTCAAAACTTGTCAAAAAC
65 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTC-AAACTTGTCAAAAAC
10339591 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
129 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
**
10339656 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
194 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGA
* * *
10339721 TTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
259 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTCAA
* * * *
10339786 ACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
324 ACATCCAATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
10339851 GGTCCTCAAACG
389 GGTCCTCAAACG
*
10339863 ATAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG-CAAA
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10339927 AACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAAAAAC
65 AACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTT-CAAACTTGTCAAAAAC
10339992 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
129 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTA
* *
10340057 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCGAACTTTTTCGA
194 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGA
10340122 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTCAA
259 TTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTCAA
10340187 ACATCCAATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
324 ACATCCAATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTC
** **
10340252 GGTCCTTGAATT
389 GGTCCTCAAACG
* * * *
10340264 AAAAACTTATTTACATGGAAATTGGTTCTCTCTAT-GTTCTTGGACGAACTTTCGAACTTGTCAC
1 AAAAACTTATTTACGTGG-AATTGGTTCTCTCT-TGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * * * * * * * * *
10340328 AGACTTA-TTACATGAGTACTGTTTCACCCTTGGTTCTTGGACGAACTTCGAACTTTTTAAAATA
64 AAACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCAAACTTGTCAAAA-A
* * * *
10340392 CTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTTGTCAAA
128 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
10340452 CTTTTATGAT
Statistics
Matches: 543, Mismatches: 39, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
399 1 0.00
400 31 0.06
401 469 0.86
402 42 0.08
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (400 bp):
AAAAACTTATTTACGTGGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
ACTTATTTACATGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCAAACTTGTCAAAAACTT
AATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTGTTCAAAC
ATCCAATGCTCAGGAAGTCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCGG
TCCTCAAACG
Found at i:10340018 original size:62 final size:62
Alignment explanation
Indices: 10339865--10340109 Score: 368
Period size: 62 Copynumber: 4.0 Consensus size: 62
10339855 CTCAAACGAT
* *
10339865 AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG-CAA
1 AAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* * * *
10339926 AAACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTCCAAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* * *
10339988 AAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
* *
10340050 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTC
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10340110 GAACTTTTTC
Statistics
Matches: 169, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
61 52 0.31
62 117 0.69
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
Found at i:10340049 original size:463 final size:462
Alignment explanation
Indices: 10339184--10341461 Score: 1631
Period size: 463 Copynumber: 4.9 Consensus size: 462
10339174 CCCTTAAATT
* * * *
10339184 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * * * *
10339249 TTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTTAAGCAA
66 TTTCACGAGTTCTTTTATAACTGCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTGAGCAA
* * * * * * * * * * * *
10339314 ATTTCCAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGACCA
130 TTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG--TA
* * *
10339379 AACAAGTTTTGGACTGTTAATTAAT-AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTG
193 AACAAGTTTTGGTC-CTTAATTAATAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
10339443 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGAC
257 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
10339506 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGA-TGA
322 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACT-A
* *
10339570 ACTTCAAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACA
386 ACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACA
10339635 TCCGAACTTGTC
451 TCCGAACTTGTC
*
10339647 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10339712 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
65 CTTTCACGAGTTCTTTTATAACTGCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTT-GAGCA
* * *
10339777 ATTTTTCGAACATCCCATGCTCGGGTAGTCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAA
129 ATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * *** * *
10339842 ACAAGTTTCGGTCCTCAAACGATAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGG
194 ACAAGTTTTGGTCCTTAATTAATAAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGG
* * *
10339906 ACGAACTTCCAAACTTG-CAAAAACTTATTTACCTGAGAATTGTTTCTCTCTTAGTTCTTAGACG
258 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * *
10339970 AACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAAC
323 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAAC
* * *
10340035 ATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATC
388 ATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATC
10340100 CGAACTTGTC
453 CGAACTTGTC
* * * * * **
10340110 --GAACTT-TTT-C----GATTTCTTT-TACAACTTCGGTTCCT-GA--AAGTATCC-AAGATGA
1 AAAAACTTATTTACGTGAGAATTGTTTCT-C--CTT-GGTTCTTGGACGAA-CATCCGAACTTG-
** * * * * ** * * * ** * ** * *
10340162 TCCATTCTTTCGA-GCAATT-GTTCA-AACATCCAATGCTCAGGAAGTCGCATAATTTGGTCTAA
60 T-CAAACTTTC-ACG-AGTTCTTTTATAAC-TGCGGTTC-CTGAAAGTATC-CAAGATGATC--C
** * ** * ** * *** * ** **
10340224 ATAGTTTG-TC--TTTTT-GTAAACAAGTTTC--GGTCCTTGAATTAAAAACTTATTTACATGGA
117 ATTCTTTGAGCAATTTTTCG--AAC-A-TCCCATGCT-CGGGAAAT-CGCA-TAATTT-GGTCTA
* * ** * * ** * * * * *
10340283 AATTGGTTCTCTCTATGTTCT-TGGACGAA-CTTTCGAACTT--GTCACAGACTTA-TTACATGA
174 AA-TAGTT-TGTCT-T-TT-TGTAAAC-AAGTTTTGGTCCTTAATTAATAAACTTAGTTACGTGA
* * * * * * * *
10340343 GTACTGTTTCACCCTTGGTTCTTGGACGAACTT-CGAACTTTTTAAAATACTTATTTACGTAAGA
233 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA-ACTTATTTACGTGAGA
* * * *** * * * *
10340407 ATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTCTTTA-AC
297 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT--TTACGTGAGAA
* **** * * * ** * * *
10340471 TTCGGTTC-CAAAAAGTAT-TCA-AGTTA-ATCCATTCCTTCTAAAAATATTTTCGAACATTCCA
360 TT-GTTTCTCTCTTAGT-TCTTAGACTAACATCCA-AACTTGTCAAAA-A-CTT---A-ATT--A
* * * * * * * * ** **
10340532 TGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG--TAAACAAATTTTGGCCTT
414 CG-T--GAGAAT----T-GTTT-CTCT--CTTG-GT-TC--TTGGACT-AAC--A-TCCGAACTT
*
10340595 -TAA
460 GT-C
* * * * * *
10340598 ATTAAGAACTTATTTATGTCAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCA
1 A--AA-AACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCA
* * * ** * *
10340663 AACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTTAAGACGATCCATTCCTTTAAG
63 AACTTTCACGAGTTCTTTTATAACTGCGGTTCCTGAAAGTATCCAAGATGATCCATT-CTTTGAG
* * * * * * * * *
10340728 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
127 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG-
* ** * *
10340793 CCAAACAAGTTTTGGATTGTTAATTAAT-AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTA
191 -TAAACAAGTTTTGG-TCCTTAATTAATAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC
* *
10340857 TTGGACAAACGTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
254 TTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
10340922 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA-TTCTTAGAC
319 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAC
* *
10340986 GAACTTCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAA
384 TAACATCCAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAA
10341051 CATCCGAACTTGTC
449 CATCCGAACTTGTC
10341065 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** * * *
10341130 CTTTTTCGATTTCTTTTACAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGAGCA
65 CTTTCACGAGTTCTTTTATAACTGCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTT-GAGCA
* * *
10341195 ATTGTTCGAACATCCCATGCTCGGGAAGTCGCATAATTTGGTCTAAATAGTTTGCCTTTTTGTAA
129 ATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* *
10341260 ACAAGTTTTGGTCCTTGAATTAA-AAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTG
194 ACAAGTTTTGGTCCTT-AATTAATAAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTG
* * * * * * *
10341323 GACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAC
257 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
10341388 G--------AACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
322 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAA
*
10341445 CATCCGAACTTGTCAAA
387 CATCCAAACTTGTCAAA
10341462 CTTTTACGAT
Statistics
Matches: 1361, Mismatches: 335, Indels: 245
0.70 0.17 0.13
Matches are distributed among these distances:
454 7 0.01
455 58 0.04
456 50 0.04
457 22 0.02
458 12 0.01
459 5 0.00
460 13 0.01
461 45 0.03
462 116 0.09
463 368 0.27
464 167 0.12
465 153 0.11
466 3 0.00
467 6 0.00
468 3 0.00
469 5 0.00
470 3 0.00
471 5 0.00
472 2 0.00
473 2 0.00
474 5 0.00
475 3 0.00
476 3 0.00
477 1 0.00
478 1 0.00
479 3 0.00
480 3 0.00
481 5 0.00
482 2 0.00
483 2 0.00
484 4 0.00
485 3 0.00
486 6 0.00
487 4 0.00
488 7 0.01
489 3 0.00
490 12 0.01
491 19 0.01
492 24 0.02
493 111 0.08
494 22 0.02
495 13 0.01
496 18 0.01
497 22 0.02
498 6 0.00
499 13 0.01
500 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (462 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTGCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTGAGCAAT
TTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
AAGTTTTGGTCCTTAATTAATAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACTAACATC
CAAACTTGTCAAAAACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGA
ACTTGTC
Found at i:10340395 original size:61 final size:63
Alignment explanation
Indices: 10340299--10340445 Score: 156
Period size: 62 Copynumber: 2.4 Consensus size: 63
10340289 TTCTCTCTAT
* * * * *
10340299 GTTCTTGGACGAACTTTCGAAC-TTGTCACAGACTTA-TTACATGAGTACTGTTTCACCCTTG
1 GTTCTTGGACGAACATTCGAACTTTGTAAAAGACTTATTTACATAAGAACTGTTTCACCCTTG
* * * * * *
10340360 GTTCTTGGACGAAC-TTCGAACTTTTTAAAATACTTATTTACGTAAGAATTGTTTCTCTCTTG
1 GTTCTTGGACGAACATTCGAACTTTGTAAAAGACTTATTTACATAAGAACTGTTTCACCCTTG
* *
10340422 TTTCTTGGACGAACATCCGAACTT
1 GTTCTTGGACGAACATTCGAACTT
10340446 GTCAAACTTT
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
60 7 0.10
61 24 0.34
62 32 0.45
63 8 0.11
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.39
Consensus pattern (63 bp):
GTTCTTGGACGAACATTCGAACTTTGTAAAAGACTTATTTACATAAGAACTGTTTCACCCTTG
Found at i:10340772 original size:215 final size:215
Alignment explanation
Indices: 10340391--10340882 Score: 555
Period size: 215 Copynumber: 2.3 Consensus size: 215
10340381 TTTTTAAAAT
* *
10340391 ACTTATTTACGTAAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTTGTCAAACTTT
1 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTT
* * ** * ** *
10340456 TATGATTTCTTTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAAAAATATTTT
66 CACGATTTCTTTAACTGAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAAAAATATTTC
* * * *
10340521 CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAAACAAA
131 CAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAACAAA
*
10340585 TTTTGGCCTT-TAAATTAAGA
196 TTTTGG-ATTGTAAATTAAGA
* * * * * *
10340605 ACTTATTTATGTCAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTT
1 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTT
* ** * * *
10340669 CACGAGTTCTTTTATAACTGAGGTTCCTTAAAGCATTTAAGACGATCCATTCCTT-TAAGCAA-A
66 CACGA-TT-TCTT-TAACTGAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAA-AAATA
10340732 TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACCA
127 TTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-CA
* * *
10340796 AACAAGTTTTGGATTGTTAATTAATA
190 AACAAATTTTGGATTGTAAATTAAGA
* * * * * *
10340822 ACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTTGTCAAA
1 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
10340883 AACTTATTTA
Statistics
Matches: 230, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
213 37 0.16
214 27 0.12
215 60 0.26
216 36 0.16
217 42 0.18
218 28 0.12
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (215 bp):
ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAACTTT
CACGATTTCTTTAACTGAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAAAAATATTTC
CAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAACAAA
TTTTGGATTGTAAATTAAGA
Found at i:10340923 original size:62 final size:62
Alignment explanation
Indices: 10340821--10341129 Score: 494
Period size: 62 Copynumber: 5.0 Consensus size: 62
10340811 GTTAATTAAT
* * * * *
10340821 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10340883 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10340945 AACTTATTTACGTGAGAATTGTTTCTCTCTT-ATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10341006 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10341068 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10341130 CTTTTTCGAT
Statistics
Matches: 231, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
61 58 0.25
62 173 0.75
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10341022 original size:123 final size:123
Alignment explanation
Indices: 10340821--10341129 Score: 492
Period size: 123 Copynumber: 2.5 Consensus size: 123
10340811 GTTAATTAAT
* * * *
10340821 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACAAACGTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTA-TTCTTGGACGAACATCCAAACTTGTCAAAAAC
* *
10340886 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
65 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10340945 AACTTATTTACGTGAGAATTGTTTCTCTCTTATTCTTAGACGAACTTCCAAACTTGTCAAAAACT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTATTCTTGGACGAACATCCAAACTTGTCAAAAACT
* *
10341010 TAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
66 TAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10341068 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-ATTCTTGGACGAACATCCAAACTTGTCAAA
10341130 CTTTTTCGAT
Statistics
Matches: 171, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
123 114 0.67
124 57 0.33
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (123 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTATTCTTGGACGAACATCCAAACTTGTCAAAAACT
TAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10341382 original size:62 final size:60
Alignment explanation
Indices: 10341310--10341462 Score: 174
Period size: 54 Copynumber: 2.6 Consensus size: 60
10341300 AATTGGTTCT
* *
10341310 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAAC--TCGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCA
* * * *
10341372 CTCTTGGTTCTT-G--G-A--CGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTCGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCA
10341426 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 CTCTTGGTTCTTGGACGAAC-T-CGAACTTGTCAAAC
10341463 TTTTACGATT
Statistics
Matches: 76, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
54 45 0.59
55 1 0.01
57 1 0.01
58 2 0.03
59 1 0.01
61 1 0.01
62 25 0.33
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (60 bp):
CTCTTGGTTCTTGGACGAACTCGAACTTGTCAAACACTTATTTACATAAGAACTGTTTCA
Found at i:10341779 original size:215 final size:218
Alignment explanation
Indices: 10341397--10341870 Score: 613
Period size: 215 Copynumber: 2.2 Consensus size: 218
10341387 CGAACTTGTC
*
10341397 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * ** * *
10341462 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAATGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGTAAATCCATTCCTTCTAGAA
*** * * *
10341527 ATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TC
131 ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC
*
10341591 -AACAAGTTTTGGCCT-TTCAATT
196 AAACAAGTTTTGGACTGTT-AATT
* * * * **
10341613 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGTTGTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10341677 CTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAA-GCATTGAAG-AAGATCCATTCCTT-TAC
66 CTTTCACGAGTTCTTTTATAACTGAGGTTCC-AAAATGCATTCAAGTAA-ATCCATTCCTTCTA-
*
10341739 GCAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
128 G-AAATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10341803 GACCAAACAAGTTTTGGACTGTTAATT
192 GACCAAACAAGTTTTGGACTGTTAATT
* * *
10341830 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
10341871 AGACAAATGC
Statistics
Matches: 222, Mismatches: 28, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
214 3 0.01
215 129 0.58
216 35 0.16
217 45 0.20
218 10 0.05
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (218 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTGAGGTTCCAAAATGCATTCAAGTAAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC
AAACAAGTTTTGGACTGTTAATT
Found at i:10341931 original size:62 final size:61
Alignment explanation
Indices: 10341833--10342170 Score: 461
Period size: 62 Copynumber: 5.5 Consensus size: 61
10341823 GTTAATTAAT
* * *
10341833 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGAC-AAATGCCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAAT--CCAAACTTGTCAAA
*
10341895 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATCCAAACTTGTCAAA
* * * *
10341957 AATTTATTTACGTGAGAATTGTTTCTCTCTT-ATTGCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT-CTTGGACGAA-ATCCAAACTTGTCAAA
* * *
10342019 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATCCAAACTTGTCAAA
*
10342081 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATCCAAACTTGTCAAA
*
10342143 AAC-T-TTTACGTGAGAGTTG-TTCTCTCTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT
10342171 TNNNNNNNNN
Statistics
Matches: 255, Mismatches: 17, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
59 9 0.04
60 14 0.05
61 3 0.01
62 224 0.88
63 4 0.02
64 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATCCAAACTTGTCAAA
Found at i:10342586 original size:56 final size:54
Alignment explanation
Indices: 10342519--10342627 Score: 146
Period size: 56 Copynumber: 2.0 Consensus size: 54
10342509 GTTCGGATGT
* * *
10342519 TCGTCCAAGAACCAAGAGAGAAAACAATTCTTACGTTAAATAAATTTTTGACAAGC
1 TCGTCCAAGAACCAAGAGAG-AAACAATACTCACG-TAAATAAATGTTTGACAAGC
* * *
10342575 TCGTCCAAGAACCAAGAGTGAAACAGTACTCACGTAAATAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACAAG
10342628 TTCGAAAGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 17 0.36
55 11 0.23
56 19 0.40
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACAAGC
Found at i:10342919 original size:61 final size:60
Alignment explanation
Indices: 10342834--10343076 Score: 339
Period size: 61 Copynumber: 4.0 Consensus size: 60
10342824 AATCGTAAAG
* * *
10342834 TTTGACAACTTCAG-AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGT
10342894 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGT
*
10342955 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
1 TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGT
* * * * *
10343016 TTTGGACAAGTTTGGAAG-TCGTCCAAGAGCTAAGAGAGAAAC-ATTCTCACATAACTAAGT
1 TTT-GACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGT
10343076 T
1 T
10343077 ATTAATTAAC
Statistics
Matches: 170, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
59 2 0.01
60 27 0.16
61 125 0.74
62 16 0.09
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (60 bp):
TTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGT
Found at i:10343634 original size:62 final size:62
Alignment explanation
Indices: 10343486--10343642 Score: 149
Period size: 62 Copynumber: 2.5 Consensus size: 62
10343476 GAAAAAGAGG
* * * *
10343486 AGAGAGAAACA-TTCTTACGTAAATAAGTTTTTAAAAAGTTCGGAAGTTCGTCCAGAAACCA
1 AGAGAGAAACAGTACTCACGTAAATAAGTCTTTAAAAAGTTCGAAAGTTCGTCCAGAAACCA
* * * * * *
10343547 AGAGTGAAACAGTACTCATGCAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCA-AGAACCA
1 AGAGAGAAACAGTACTCACGTAAATAAGTCTTTAAAAAGTTCGAAAGTTCGTCCAGA-AACCA
* * * *
10343609 AGAGAGAACCAATTGC-CACGTAAATAAGTTTTTA
1 AGAGAGAAAC-AGTACTCACGTAAATAAGTCTTTA
10343643 GTTCGAGGAC
Statistics
Matches: 75, Mismatches: 18, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
61 11 0.15
62 61 0.81
63 3 0.04
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.25
Consensus pattern (62 bp):
AGAGAGAAACAGTACTCACGTAAATAAGTCTTTAAAAAGTTCGAAAGTTCGTCCAGAAACCA
Found at i:10343873 original size:62 final size:62
Alignment explanation
Indices: 10343783--10344032 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
10343773 ATCGTAAAAG
* * * *
10343783 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10343845 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAGAAACAA-TCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAAC-CA-AGAG-AGAAACAATTCTCACGTAAATAAGTT
*
10343909 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10343971 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10344033 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
61 7 0.04
62 102 0.61
63 2 0.01
64 48 0.29
65 8 0.05
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10344007 original size:126 final size:126
Alignment explanation
Indices: 10343783--10344010 Score: 375
Period size: 126 Copynumber: 1.8 Consensus size: 126
10343773 ATCGTAAAAG
* * *
10343783 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
*
10343848 GACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAGAAACAATCTCACATAAATAAGTT
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAGAAACAATCTCACATAAATAAGTT
* *
10343909 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
* * *
10343974 TACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAA
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAA
10344011 ACAATTCTCA
Statistics
Matches: 93, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 93 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (126 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAGAAACAATCTCACATAAATAAGTT
Found at i:10344544 original size:62 final size:62
Alignment explanation
Indices: 10344408--10344592 Score: 189
Period size: 62 Copynumber: 3.0 Consensus size: 62
10344398 AAATCATAAA
* * * *
10344408 AGTTTGACAAGTTCGGATGTTCGTCCAAGAAACAAAGAGAAACAATTCTTACGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAACAATACTCACGTAAATAAGT
* * * * * *
10344470 ATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA-AGAGAAACAATACTCACGTAAATAAGT
** * *
10344533 -GTTTGACAAGTTCAAAAGTT--TCCAAGAACCAGGAGAGAACCAATTAC-CACGTAAATAAGT
1 AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA-AAGAGAAACAA-TACTCACGTAAATAAGT
10344593 TTTAATCAAG
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
60 30 0.30
61 3 0.03
62 45 0.45
63 22 0.22
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (62 bp):
AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAAGAGAAACAATACTCACGTAAATAAGT
Found at i:10344919 original size:61 final size:62
Alignment explanation
Indices: 10344740--10344978 Score: 365
Period size: 62 Copynumber: 3.9 Consensus size: 62
10344730 ATCGTAAAAG
* * * *
10344740 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10344802 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10344864 TTTGACAAGTTTGGAAGTTCGT-CAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10344925 TTT-ACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAA
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10344979 CAGTTATTAA
Statistics
Matches: 161, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
60 16 0.10
61 68 0.42
62 77 0.48
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10344970 original size:122 final size:124
Alignment explanation
Indices: 10344740--10344974 Score: 384
Period size: 122 Copynumber: 1.9 Consensus size: 124
10344730 ATCGTAAAAG
* * *
10344740 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
*
10344805 GACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
* *
10344864 TTTGACAAGTTTGGAAGTTCGT-CAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
* *
10344928 -ACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCAC
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCAC
10344975 GTAACAGTTA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
122 44 0.43
123 40 0.39
124 19 0.18
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (124 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:10345385 original size:213 final size:214
Alignment explanation
Indices: 10344944--10345414 Score: 551
Period size: 213 Copynumber: 2.2 Consensus size: 214
10344934 TTGGACGTTT
* * * * * * *
10344944 GTCCAAGAACTAAGAGAGAAACAATTCTCACGT-AA-CAGTTATTAA-TTAACTGTCCAAAACTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGACCAAAA-TT
* * * * ***
10345006 GTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGA
64 GTTT--ACAGAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTCAAA
** * ** * *
10345071 AATTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
127 AATTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
10345136 AAGTTTGACAAGTTCGAAAGTTC
192 AAGTTTGACAAGTTCGAAAGTTC
*
10345159 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTGT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTGT
10345223 TTACAGAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATGTTCAAAAAT
66 TTACAGAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTTCAAAAAT
* * *
10345287 TTC-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTATAAAAGAAATCGTAAA
130 TGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATCGTAAA
* * *
10345350 AGTTTGACATGTTCGGATGTTC
193 AGTTTGACAAGTTCGAAAGTTC
* * *
10345372 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTT
10345415 CTGACAAGCT
Statistics
Matches: 217, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
212 2 0.01
213 127 0.59
214 49 0.23
215 20 0.09
216 15 0.07
217 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (214 bp):
GTCCAACAACCAAGAGACAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAATTGT
TTACAGAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTCAAAAATT
GCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
TTGACAAGTTCGAAAGTTC
Found at i:10345429 original size:54 final size:54
Alignment explanation
Indices: 10345370--10345476 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
10345360 GTTCGGATGT
* *
10345370 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * *
10345424 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10345477 TTTGAAAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 45 0.96
55 2 0.04
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Found at i:10345782 original size:62 final size:61
Alignment explanation
Indices: 10345685--10345932 Score: 358
Period size: 62 Copynumber: 4.0 Consensus size: 61
10345675 ATCGTAAAAG
*
10345685 TTTGACAAGTTCA-AATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAA-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10345747 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTT
* * *
10345809 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAAACAATTCTCACGTAAACAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGT-AATAAGTT
* *
10345872 TTTGACAAG-TTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10345933 ATTAATTAAC
Statistics
Matches: 173, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
60 2 0.01
61 22 0.13
62 114 0.66
63 35 0.20
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (61 bp):
TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10346479 original size:60 final size:60
Alignment explanation
Indices: 10346296--10346484 Score: 200
Period size: 60 Copynumber: 3.1 Consensus size: 60
10346286 GAAATCATAA
* * * *
10346296 AAGTTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTTACGTAAAT
1 AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * * * * *
10346356 AAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAAT
1 AAG---TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
* * * *
10346419 AAGTTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGC-CACGTAAAT
1 AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAAT
10346479 AAGTTT
1 AAGTTT
10346485 TTCGTTCGAG
Statistics
Matches: 103, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
60 53 0.51
61 1 0.01
63 49 0.48
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (60 bp):
AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
Found at i:10346728 original size:62 final size:62
Alignment explanation
Indices: 10346638--10346885 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10346628 ATCGTAAAAG
* * *
10346638 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10346700 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10346762 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10346824 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10346886 ATTATTAACT
Statistics
Matches: 171, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 171 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10347244 original size:214 final size:218
Alignment explanation
Indices: 10346844--10347319 Score: 562
Period size: 214 Copynumber: 2.2 Consensus size: 218
10346834 TTGGACGTTT
* * * * * *
10346844 GTCCAAGAACTAAGAGAG--AAACAATTCTCACGTAACTAAGTTATTATTAACTGTCCAAAACTT
1 GTCCAACAACCAAGAGAGAAAAACAATTCTCACGTAAATAAGTTTTTATTAACAGACCAAAACTT
* * * ***
10346907 GTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGA
66 GTTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAA
* * * *
10346972 AATTTGCTTAAAGGAATGGATCATCTTGAATGCTTTAAGGAACCTCAATTATAAAAGAACTCGTG
130 AATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTCAATTATAAAAGAAATCGTA
10347037 AAAGTTTGACAAGTTCGAAAGTTC
195 AAAGTTTGACAAGTTCGAAAGTTC
* *
10347061 GTCCAACAACC-A-AG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGACCAAAAC
1 GTCCAACAACCAAGAGAGAAAAACAATTCTCACGTAAATAAGTTTTT-A-TTAACAGACCAAAAC
*
10347122 TTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTT-TTGAGCATAGAATGTTCAA
64 TTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTT-AA
* * *
10347185 AAAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACC-GAAGTTATAAAAGAAA
128 AAAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCTCAA-TTATAAAAGAAA
* * *
10347246 TCGTAAAAGTTTGACATGTTCGGATGTTC
190 TCGTAAAAGTTTGACAAGTTCGAAAGTTC
* *
10347275 GTCCAAGAACCAAGAGAGAAAAACAATTCTTACGTAAATAAGTTT
1 GTCCAACAACCAAGAGAGAAAAACAATTCTCACGTAAATAAGTTT
10347320 CTGACAAGCT
Statistics
Matches: 220, Mismatches: 28, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
213 4 0.02
214 88 0.40
215 48 0.22
216 27 0.12
217 49 0.22
218 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (218 bp):
GTCCAACAACCAAGAGAGAAAAACAATTCTCACGTAAATAAGTTTTTATTAACAGACCAAAACTT
GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTAAAAA
ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCTCAATTATAAAAGAAATCGTAA
AAGTTTGACAAGTTCGAAAGTTC
Found at i:10347379 original size:54 final size:55
Alignment explanation
Indices: 10347273--10347381 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 55
10347263 GTTCGGATGT
* *
10347273 TCGTCCAAGAACCAAGAGAGAAAAACAATTCTTACGTAAATAAGTTTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAG-AAAACAATACTCACGTAAATAAGTTTCTGACAAGC
* * *
10347329 TCGTCCAAGAACCAAGAGTG-AAACAGTACTCATGTAAATAAGTGTT-TGACAAG
1 TCGTCCAAGAACCAAGAGAGAAAACAATACTCACGTAAATAAGT-TTCTGACAAG
10347382 TTTGAAAGTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
54 26 0.55
55 2 0.04
56 19 0.40
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.22
Consensus pattern (55 bp):
TCGTCCAAGAACCAAGAGAGAAAACAATACTCACGTAAATAAGTTTCTGACAAGC
Found at i:10347790 original size:63 final size:64
Alignment explanation
Indices: 10347602--10347837 Score: 349
Period size: 63 Copynumber: 3.8 Consensus size: 64
10347592 CAAGTCAAAT
* *
10347602 GTTCGTCCAAGAACC-AGAGAGA-AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAA
1 GTTCGTCCAAGAACCAAGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
*
10347664 GTTCGTCCAAGAACCAAGAGAGAGAGAAACAATTCTCACGTGAATAAG-TTTTGACAAGTTTGGA
1 GTTCGTCCAAGAACC-A-AGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGA
10347728 A
64 A
*
10347729 GTTCATCCAAGAACCAAGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
* * *
10347792 GTTCGTCCAA-AAGCTA-AGAGAGAAACAATTCTCACGTAACTAAGTT
1 GTTCGTCCAAGAACCAAGAGAGAGAAACAATTCTCACGTAAATAAGTT
10347838 ATTAATTAAC
Statistics
Matches: 160, Mismatches: 9, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
61 29 0.18
62 19 0.12
63 44 0.28
64 11 0.07
65 37 0.23
66 20 0.12
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (64 bp):
GTTCGTCCAAGAACCAAGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
Found at i:10348317 original size:63 final size:62
Alignment explanation
Indices: 10348234--10348401 Score: 194
Period size: 62 Copynumber: 2.7 Consensus size: 62
10348224 GTTCGTCCAC
* * *
10348234 CCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGT
1 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAAAAAGTTCGAAAGTTCGT
* * * * * * * * *
10348297 CCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGTCTTTGACAAGTTCGAAAGTTTGT
1 CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAAAAGTTCGAAAGTTCGT
*
10348359 CCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTTT
1 CCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTT
10348402 CGTTCGAGGA
Statistics
Matches: 85, Mismatches: 19, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
62 52 0.61
63 33 0.39
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.24
Consensus pattern (62 bp):
CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAAAAGTTCGAAAGTTCGT
Found at i:10348665 original size:61 final size:62
Alignment explanation
Indices: 10348553--10348798 Score: 370
Period size: 61 Copynumber: 4.0 Consensus size: 62
10348543 ATCGTAAAAG
* * *
10348553 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10348615 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAG-GAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10348676 TTTGACAAGTTTGGAAGTTCGTCC-AGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10348737 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10348799 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
60 8 0.05
61 96 0.57
62 63 0.38
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10349284 original size:54 final size:54
Alignment explanation
Indices: 10349188--10349294 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
10349178 GTTCGGATGT
* *
10349188 TCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTCTGACAAGC
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTT-TGACAAGC
* * * *
10349242 TCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAACTAAGTGTTTGACAAG
1 TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAG
10349295 TTCGAAAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 44 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (54 bp):
TCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAAGC
Found at i:10349718 original size:62 final size:61
Alignment explanation
Indices: 10349500--10349744 Score: 379
Period size: 61 Copynumber: 4.0 Consensus size: 61
10349490 ATCGTAAAAG
* *
10349500 TTTGACAAGTTCT-GATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGT
1 TTTGACAAGTT-TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
10349561 TTTGACAAGTTTGGACGTTCATCTAAGAACC-AGAGAGAAACAATTCTCACGTAAATAAGT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10349621 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-T
* *
10349683 TTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGT
10349744 T
1 T
10349745 ATTAATTAAC
Statistics
Matches: 171, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
60 57 0.33
61 58 0.34
62 56 0.33
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10349719 original size:121 final size:122
Alignment explanation
Indices: 10349500--10349744 Score: 379
Period size: 121 Copynumber: 2.0 Consensus size: 122
10349490 ATCGTAAAAG
* *
10349500 TTTGACAAGTTCTGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTTG
1 TTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTG
* *
10349565 ACAAGTTTGGACGTTCATCTAAGAACC-AGAGAGAAACAATTCTCACGTAAATAAGT
66 ACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10349621 TTTGACAAGTT-TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTT
* * *
10349685 TGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAACAATTCTCACGTAACTAAGT
64 TGACAAGTTTGGAAGTTCATCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGT
10349744 T
1 T
10349745 ATTAATTAAC
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
120 1 0.01
121 58 0.51
122 25 0.22
123 29 0.26
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (122 bp):
TTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTG
ACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10349762 original size:946 final size:951
Alignment explanation
Indices: 10342352--10355388 Score: 19063
Period size: 947 Copynumber: 13.7 Consensus size: 951
10342342 AGGAGATACA
*
10342352 AAAGGCCAAAACTTGTATACAAAATGACAAACTATTTTAGACCAAATGATTGTGATTTTCTGAGC
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGA-TGTGATTTTCTGAGC
*
10342417 ATGGAGTGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTT
64 ATGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAG-TT
* *
10342482 ATAAAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAACAAT
128 ATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG-AAACAAT
* * *
10342547 TCTTACGTTAAATAAATTTTTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCACGTAA
192 TCTTACG-TAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAA
* *
10342612 ATAAGTGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGGAGAGAACCAATTGCCACGTAGAT
256 ATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAA-GAGAGAACCAATTGCCACGTAAAT
* * *
10342677 AAG-TTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAGACAAACAATTTAGACCAAAATTAAGC
320 AAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACC-AAATTATGC
* * *
10342741 GACTT-CCGAG-ATAGGATGTTCGAACAATTGCTCAAAAGAA-GGATCAT-TTGGAATACTTTCA
384 GACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGG-ATACTTTCA
* * *
10342802 GGAACCGAAGGTGTATAAAAGAAATCGT-AAAGTTTGACAACTTCAGA-GTTCGTCCAAGAACCA
448 GGAACCGAA-GT-TGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCA
*
10342865 AGAGAGAAACAATTCTCACGTAATTAAG-TTTTGACAAGTTTAGAAGTTCATCCAAGAACCAAGA
511 AGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGA
*
10342929 GAGAAACAATTCTCACGTGAATAAG-TTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAG
576 GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAG
* *
10342993 AAACAATTCTCACGTAAATAAGTTTTGGACAAGTTTGGAAG-TCGTCCAAGAGCTAAGAGAGAAA
641 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAA
*
10343057 C-ATTCTCACATAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
706 CAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
*
10343121 TTTTGACCAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAA-TTACTCAAAAGAATGGATC
771 TTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATC
10343185 GTCTTGAATGCTTTAAGGAACCTCATGTTATAAAAGAACTCAATTGAATGAGAAAGTTTGACAAG
836 GTCTTGAATGCTTTAAGGAACCTCA-GTTATAAAAGAACTC----G--T--GAAAGTTTGACAAG
* * * * * *
10343250 TTCGAAAATTCGTTCAAACAACCAAGGAGATACAATTC-GACATAAAATAAATTCTTAATTT
892 TTCGAAAGTTCG-TCCAACAACCAAGGAGATACAATTCTCACGT-AAATAAGTTTTTAATTT
* * *
10343311 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGA-CAAATGATG-GATTTTCCGCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* * *
10343374 GGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAA-TTGAATA-ATTTTTGGAACCGAAG-T-T
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACA-TTTTGGAACCGAAGTTAT
* *
10343435 -AAAGAAATCATAAAAG-TTGACAAGTTCGGATGTTCGTCCAAGAA-AAAGAGGAGAGAGAAACA
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA-GAGA-A-ACA-A
*
10343497 TTCTTACGTAAATAAGTTTTTAAAAAGTTCGGAAGTTCGTCC-AGAAACCAAGAGTGAAACAGTA
191 TTCTTACGTAAATAAGTTTTT-----G-AC--AAGTTCGTCCAAG-AACCAAGAGTGAAACAGTA
* * *
10343561 CTCATGCAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCC
247 CTCATGTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCC
* * *
10343626 ACGTAAATAAGTTTTTAGTTCGAGGACCGAAACTTGTTTTTTACAAAAAGACAAACT-TAT-G--
312 ACGTAAATAAGTTTTTAATTCAAGGACCGAAACTTG---TTTACAAAAAGACAAACTATTTAGAC
* *
10343687 C-GA-T-T---AC-T--CGAGCATGGGCTGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGG
374 CAAATTATGCGACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGG
* *
10343743 ATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCA
439 ATACTTTCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
* *
10343808 AGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGA
504 AGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGA
* * *
10343873 ACTAAGAGAGAAGAAACAA-TCTCACATAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGA
569 AC-CA-AGAG-AGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGA
* * * *
10343937 ACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-C
631 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGC
*
10344001 TAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAA
695 TAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAA
*
10344066 ATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTACTCAA
760 ATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAA
10344131 AAGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGAAA
825 AAGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTC------G--TGAAA
* * * *
10344196 GTTTGACAAGTTCGAAAG-TCGTCAAACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTT
882 GTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
10344260 AATTT
947 AATTT
* * *
10344265 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGA-CAAATGATGGGATTTT-TCGCGCA
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCA
* * * * * *
10344328 TGGAATGCTCGAAAATTTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAGTTAA
65 TGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT
*
10344393 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAACAA-AGAGAAACAATTCT
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
10344457 TACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
195 TACGTAAATAAGT-TTTT-----G-AC--AAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
* * *
10344522 TGTAAATAAGTGTTTGACAAGTTCAAAAGTT--TCCAAGAACCAGGAGAGAACCAATTACCACGT
251 TGTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGT
*
10344585 AAATAAG-TTTTAA-TCAAGGACCGAAACTTGTTTACAAAAAGGACATACTATTTAGA-C-AATT
316 AAATAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAA-GACAAACTATTTAGACCAAATT
* *
10344646 ATGCGGCTT--CGAGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATC-TGGATAC-T
380 ATGCGACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTT
* *
10344706 TCAGGAACAGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACC
445 TCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACC
* * *
10344771 AAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAG
510 AAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAG
* *
10344836 AGAGAAACAATTCTCACATAAATAAGTTTTTGACAAGTTTGGAAGTTCGT-CAAGAACCAAGAGA
575 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGA
* * *
10344900 AAAACAATTCTCACGTAAATAAGTTTTT-ACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAGA
640 GAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGA
*
10344963 AACAATTCTCACGTAAC--AGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAAC
704 AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAAC
* * * *
10345026 TATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAA-TTGCTTAAAGGAATGGA
769 TATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGA
10345090 TCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAA
834 TCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAA
*
10345155 GTTCGTCCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
899 GTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* *
10345208 AAAGACCAAAA-TTGTTTACAGAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
*
10345272 AGAATGTTC-AAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10345336 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
131 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* *
10345401 ACGTAAATAAGTTTCTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAG
196 ACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAG
* *
10345466 TGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAGAACCAATTGCCATGTAAATAAGT
261 TGTTTGACAAGTTCGAAAGTTCGTCCAAGAACC-A-AGAGAGAACCAATTGCCACGTAAATAAGT
* * * *
10345531 TTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACAATTTAGACCAAA-TAAGCGACTT
324 TTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTT
* *
10345595 CCAGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTTAGGAACC
389 CCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACC
**
10345660 GAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCAAATGTTCGTCCAAGAACCAAGAGAGAA
454 GAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
10345725 ACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
519 ACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10345790 ATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAAACAAT
584 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAG-AAACAAT
*
10345855 TCTCACGTAAACAAGTTTTTGACAAG-TTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCT
648 TCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCT
10345919 CACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGAC
713 CACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGAC
*
10345984 CAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGA
778 CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGA
* *
10346049 ATGCTTTAAGGAACCTCAGTTATAAAACAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCAA
843 ATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCA
* * *
10346114 ACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTTAA-TT
908 ACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* * *
10346157 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTC-GCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* * * *
10346221 GGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAG-T-T-
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10346283 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAAACAAGAGAGAAACAATTCTT
131 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
*
10346348 ACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCAT
196 ACGTAAATAAGT-TTTT-----G-AC--AAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCAT
* * *
10346413 GCAAATAA--GTTTGACAAGTTCGAAAGTTTGTCCATGAACCAAGAGAGAACCAATTGCCACGTA
252 GTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTA
** * *
10346476 AATAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATTAT
317 AATAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTAT
* *
10346541 GCGACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTC
382 GCGACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTC
* *
10346606 AGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAA
447 AGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAA
* * *
10346671 GAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAG
512 GAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAG
* * *
10346736 AGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAAA
577 AGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGA
* * *
10346801 AACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAGAAA
642 AACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAGAAA
*
10346865 CAATTCTCACGTAACTAAGTTATT-ATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
706 CAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
* * * *
10346929 TTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATGGATC
771 TTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATC
* *
10346994 ATCTTGAATGCTTTAAGGAACCTCAATTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGT
836 GTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGT
*
10347059 TCGTCCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
901 TCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
*
10347110 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTT-TGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
*
10347174 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10347239 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAAACAATTC
131 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG--AAACAATTC
* *
10347304 TTACGTAAATAAGTTTCTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
194 TTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
*
10347369 AGTGTTTGACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACCAATTGCCACGTAAATAAG
259 AGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAG-AACCAATTGCCACGTAAATAAG
* *
10347434 TTTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAAC-ATTTAGACCAAATTA-GCGACT
323 TTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACT
* *
10347497 TCCAGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTTAGGAAC
388 TCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAAC
**
10347562 CGAAGTTGTAAAAGAAATCGT-AAAGTTTGACAAG-TCAAATGTTCGTCCAAGAACC-AGAGAGA
453 CGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG-
10347624 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAGA
517 AAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACC---A-AGAGA
*
10347689 GAAACAATTCTCACGTGAATAAG-TTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAG
578 GAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACC-A-AGAGAG
10347753 AAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTGGAAGTTCGTCCAAAAGCTAAGAGAGAAA
641 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAA
10347817 CAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
706 CAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTA
*
10347882 TTTTGACCAAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATC
771 TTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATC
*
10347947 GTCTTGAATGCTTTAAGG-ACCTCAGTTATAAAACAACTCGTGAAAGTTTGACAAGTTC-AAAGT
836 GTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGT
* * * *
10348010 CAAGTCGTCAAACAACCAAGGAGATACAATTCTGACATAAATAAGTTCTTAATTT
901 ----TCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* * *
10348065 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTT-TCGCGCA
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCA
* * * *
10348129 TGGAATGCTCGAAAAATTTTTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAG-T-T
65 TGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT
*
10348192 -AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCACCCAAGAAACAAGAGAGAAACAA
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGT----CCAAGAACCAAGAGAGAAACAA
*
10348256 TTCTTACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTA
191 TTCTTACGTAAATAAGT-TTTT-----G-AC--AAGTTCGTCCAAGAACCAAGAGTGAAACAGTA
* * *
10348321 CTCATGCAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCC
247 CTCATGTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCC
** * *
10348386 ACGTAAATAAGTTTTTCGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACAAA
312 ACGTAAATAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAA
* *
10348451 ATTATGCGACTACTCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATA
377 ATTATGCGACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATA
* *
10348516 CTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGA
442 CTTTCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
* * *
10348581 ACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCTAAGAACT
507 ACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACC
* *
10348646 AAG-GAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCGTCC-AGAACCAAG
572 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAG
* * * *
10348709 AGAAAAACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAG
637 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAG
*
10348773 AGAAACAATTCTCACGTAACTAAGTTATTAATTAACTGTCCAAAACTTGTTTGGTCAAAATGACA
701 AGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACA
* * * *
10348838 AACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAAT
766 AACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAAT
10348903 GGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCG
831 GGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCG
*
10348968 AAAGTTCGTCCAACAACCAAGGACATACAATTCTCACGTAAATAAG-TTTTAATTT
896 AAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* *
10349023 GAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
*
10349088 AGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT-
* * *
10349153 AAAAAAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * *
10349218 TACGTAAATAAGTTTCTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAACTAA
195 TACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAA
10349283 GTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTT
260 GTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTT
*
10349348 TTTAATTCAAGGACCGAAACTTGTTT-CAAAAAAACAAACTATTTAGACCAAATTATGCGACTTC
325 TTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTC
* *
10349412 CCGGGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATCTTGGATACTTTCAGGAACCG
390 CCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACCG
*
10349476 AAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCTGATGTTCGTCCAAGAACCAAGAGAGAAA
455 AAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAA
* * * *
10349541 CAATTCTCACGTGAA-TAAG-TTTTGACAAGTTTGGACGTTCATCTAAGAACC-AGAGAGAAACA
520 CAATTCTCACGT-AATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10349603 ATTCTCACGTAAATAAG-TTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
584 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
10349667 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTC
649 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTC
10349732 ACGTAACTAAGTTATTAATTAACAGTCCAAAA-TTG-TTGGTCAAAATGACAAACTATTTTGACC
714 ACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACC
*
10349795 AAATGATGTGATCTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
779 AAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
10349860 TGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTGACAAGTTCGAAAGT
844 TGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAG--T------TTGACAAGTTCGAAAGT
* * * *
10349925 TCGTCAAACAACCAAGGAGATACAATTC-GACATAAATAAGTTCTTAATTT
901 TCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* * *
10349975 AAAGGCCAAAATTTGTTTACAAAATGACAAACTATTTAGA-CAAATGATGGGATTTTC-GCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* * * *
10350038 GGAATGCTCGAAAAATTTTTAGGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAG-T-T
66 GGAATGTTCAAAAAATTTCTA-GAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT
*
10350101 -AAAGAAATCATAAAAG-TTGACAAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCT
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
10350164 TACGTAAATAAGTATTTTAAAAAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
195 TACGTAAATAAGT-TTTT-----G-AC--AAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
* * *
10350229 TGCAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAG-ACCAAGAGAGAACCAATTGCCACGT
251 TGTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGT
** * * *
10350293 AAATAAGTTTTT-CGTCGAGGA-CGAAAACTTGTTTACAAAAAGACAAATTATTTAGA-CAAAAT
316 AAATAAGTTTTTAATTCAAGGACCG-AAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATT
* *
10350355 ATGCGA-TACTCGAGCATGGGATGTTCGAAAAA-TGCTCGAAAGAATGGATCATCTTGGATACTT
380 ATGCGACTTCCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTT
* *
10350418 TCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACC
445 TCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACC
* * *
10350483 AAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAG-TCGTCTAAGAACTAAG
510 AAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAG
* *
10350547 AGAGAAAACAATTCTCACGTAATTAAGTTTTTGACAAG-TTGGAAGTTCGTCCAAGAACCAAGAG
575 AGAG-AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAG
* * * *
10350611 AAAAACAATTCTCACGTAAATAAGTTTTTTACAAGTTTGGACGTTTGTCCAAGAA-CTAAGAGAG
639 AGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAA-AAGCTAAGAGAG
10350675 AAACAATTCTCACGTAACTAAGTTATTAATTAACATGTCCAAAACTTGTTTGGTCAAAATGACAA
703 AAACAATTCTCACGTAACTAAGTTATTAATTAACA-GTCCAAAACTTGTTTGGTCAAAATGACAA
* * * *
10350740 ACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGAATG
767 ACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATG
10350805 GATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAG-TTGACAAGTTCGA
832 GATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGA
*
10350869 AAGTTCGTCCAACAACCAAGGACATACAATTCTCACGTAAATAAGTTTTTAATTT
897 AAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
* *
10350924 GAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
*
10350989 AGAATGTT--AAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT-
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10351051 AAAGAAATCGTAAAAGTTTGACATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
131 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
* *
10351116 ACGTAAATAAGTTTCTGACAAGCTCGTCCAAGAACCAAGAGTGAAACAACTCAGTACTCATG-AA
196 ACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTG--A-AA--CAGTACTCATGTAA
10351180 ATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATA
256 ATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATA
* *
10351245 AG-TTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAAACAAACTATTTAGACCAAA-TATGCGA
321 AGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA
* * *** * *
10351308 CTTCCCGGGCATGGGATGTTCG-AAAA-T--ACGTAAAGAAAAAATC-TC-T--AAAATGTT-A-
386 CTTCCCGAGCATGGGATGTTCGAAAAATTGCTCG-AAAGAATGGATCATCTTGGATACT-TTCAG
** * * * * * ** * *
10351363 GAATTGCAAGTT-TCGAACAGAAATGGTTGCGGATACTTTCCTCAGGAT-GGATGATCATCTTGG
449 GAACCG-AAGTTGT--AAAAGAAATCG-T---AAAAGTTT-GACAAGTTCGGATG-T--TC---G
* * * *
10351426 ATACTTTCAGGAA-CAAGAAGTGTAAAAGAAATCT-ACGTAA--AAG--TTTGA-AAGTTCT-GA
500 -T-C---CAAGAACCAAG-AGAG--AAACAATTCTCACGTAATTAAGTTTTTGACAAGTT-TAGA
* *
10351483 TGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGT
556 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGT
* * **
10351547 TCATCTAAGAACCAAGAGAAGAAAGAGAAACAAT-ACGT-AAT-AG-TTTTGACAAGTTT-GAAG
621 TCATCCAAGAACCAAGAG-AGAAACA-ATTC--TCACGTAAATAAGTTTTTGACAAGTTTGGAAG
* *
10351607 TTCGTCCAAGAGCT-AGAGAGAAAC-ATTCTCGCGTAACTAAGTTATTTAA-TAACAGTCCAAAA
682 TTCGTCCAAAAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTTA-TTAATTAACAGTCCAAAA
* *
10351669 CTTGTTT-GTCAAAA-GACAAACTA-TTAGACCAAATGATGTGATCTCTCGAGCATGGAATGTTT
746 CTTGTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATG-TT
*
10351731 TGAAAATTTACTC-AAAGAATGGATCGTCTTGAATGCTTTAAGGAACCT-AGTTATAAAAGAACT
810 TGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACT
* * * * * *
10351794 TGTGAAAGTTTGATAAGTTCGAAAGTTCATCAAACAACCAAGGAGATACAATTCTGACATAAAAT
875 CGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGT-AAAT
10351859 AAGTTCTTTTTAATTT
939 AAG---TTTTTAATTT
** * * *
10351875 AAAGGAAAAAAATTGTTTACAAAATGACAAACTATTTAGACC-AATGATGGGATTTTC-GCGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* * *
10351938 GGAATGCTCGAAAAATTT-TAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAG-T-T-
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10351999 AAAGAAATCAAAATAAAAGTTTGACGAGGTTCGGATGTGTTCTGTTCGTCCAAGAAACAAGAGAG
131 AAAGAAATC---ATAAAAGTTTGAC-AAGTTCGGA-------TGTTCGTCCAAGAACCAAGAGAG
*
10352064 AAACAATTCTTACGTAAATAAGTATTTTAAAAAGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAA
185 AAACAATTCTTACGTAAATAAGT-TTTT-----G-AC--AAGTTCGTCCAAGAACCAAGAGTGAA
* *
10352129 ACAGTA-TCATGTAAATAAGTGTTTGACAAGTTCAAAAGTTCGTCCAAGAACCAGGAGAGAACCA
241 ACAGTACTCATGTAAATAAGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCA
* * * *
10352193 ATTACCACGTAAATAAGTTTTTAATCCAAGGACCGACCGAAACTTGTTTACAAAAGGACATACTA
306 ATTGCCACGTAAATAAGTTTTTAATTCAA-G---GACCGAAACTTGTTTACAAAAAGACAAACTA
* *
10352258 TTTAGACCAAATTA-GCGGCTTCCCGAGCATGGGATGTTCGAAAAAAATAGCTCGAAAG-A--GA
367 TTTAGACCAAATTATGCGACTTCCCGAGCATGGGATGTTCG--AAAAATTGCTCGAAAGAATGGA
* * * *
10352319 TCATCTTGGATACTTTCAAGAACAGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAACTTCAGAT
430 TCATCTTGGATACTTTCAGGAACCGAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGAT
10352384 GTTCGTCCAAGAA-CAAGAGAGAAAACAATTCTCACGTAATTAAGTTTTTTGACAAGTTTAGAAG
495 GTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAATTAAG-TTTTTGACAAGTTTAGAAG
* * *
10352448 TTTGTCCAAGAACCAAGAGAGAAACACAATCTCACGTGAATAAGTTTTTGACAAG-TTGGAAGTT
558 TTCGTCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTT
10352512 CATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
622 CATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGT
* *
10352577 CCAAGAGCTAAGAGAGAAA-ACATTCTCACGTAACTAAGTT-TCTAATTAACTGTCCAAAACTTG
687 CCAAAAGCTAAGAGAGAAACA-ATTCTCACGTAACTAAGTTAT-TAATTAACAGTCCAAAACTTG
10352640 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAA
750 TTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAA
*
10352705 ATTTACTCAAAAGAATGGATCATCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
815 ATTTACTCAAAAGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGA
*
10352770 AAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCGAGGAGATACAATTCTCACGTAAATAAGTTT
880 AAGTTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGGAGATACAATTCTCACGTAAATAAGTTT
10352835 TTAATTT
945 TTAATTT
*
10352842 AAAGGCCAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCTGAGCA
1 AAAGGCC-AAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCA
*
10352907 TGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGAACCGAAG-T-T
65 TGGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTAT
* *
10352970 -AAAGAAATCATAAAAGTTAGACGAGTTCGGATGTTCGTCCAAGAAACCAAGAGAGAAACAATTC
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAG-AACCAAGAGAGAAACAATTC
10353034 TTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
194 TTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
*
10353099 AGTGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGT
259 AGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGT
*
10353164 TTTTAATTCAAGGACCGAAACTTGTTTCCAAAAAGACAAAC-ATTTAGACCAAATTATGCGACTT
324 TTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTT
* *
10353228 CCCGAGCATGGGATGTTCGAAAAATAGCTCGAAAG-ATGGATCATCTTGGATACTTTCAGGAACA
389 CCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACC
* * *
10353292 GAAGTT-TAAAAGAAATCGTAAATGTTTGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAA
454 GAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
*
10353356 ACAATTCTCACGTAATTAAGTTTTTTACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
519 ACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10353421 ATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGA-AAACAATT
584 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
*
10353485 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTC
649 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTC
**
10353550 ACGTAACTAAGTTGCTAATTAACAGTCCAAAAC-TGTTTGGTCAAAATGAC-AACTATTTTGACC
714 ACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACC
10353613 AAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
779 AAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
*
10353678 TGCTTTGAGGAA-CTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
844 TGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
*
10353742 CAACCGAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
909 CAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
10353785 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* *
10353850 GGAATG-TCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACTTTTTGGAAACGAAGTTAGT
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTA-T
* * * *
10353914 TAAAGAAATCATAAAAGTTAGACGAGTTCGGATGTTCGTCCAAGAACAAGAGAGAGAAACAATTC
130 AAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCA-AGAGAGAAACAATTC
10353979 TTACGTAAATAAG-TTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
194 TTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATA
*
10354043 AGTGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGT
259 AGTGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGT
* * * *
10354108 TTTTAATTCAAGGACTGAAACTTGTTTCCAAAAAGACAAACAATTTAGACCAAATTAAGCGACTT
324 TTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTT
* * * *
10354173 CCCGGGCATGGGATGTTCGAAAAATAGCTCAAAAG-ATGGATCATCTTGGATACTTTCAGGAACA
389 CCCGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACC
* * * *
10354237 GAAGTTTTAAAAGAAATCGTAAATGTCTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAA
454 GAAGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
*
10354302 ACAATTCTCACGTAATTAAGTTTTTTACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
519 ACAATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10354367 ATTCTCACGTGAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
584 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
*
10354432 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTC
649 CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTC
**
10354496 ACGTAACTAAGTTGCTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGAC-AACTATTTTGACC
714 ACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACC
10354560 AAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
779 AAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAA
* *
10354625 TGCTTTGAGGAACTTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
844 TGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAA
*
10354690 CAACCGAGGAGATACAATTCTCACGTAAATAAGTTTTTAA-TT
909 CAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
*
10354732 AAAGGCCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
1 AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
* * * *
10354797 GGAATGTTCAAAAAATTTCTAGATGGAATGGATTAACTTTAATGCATTTTGGAACTGAAGTTATA
66 GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
* *
10354862 AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTT
131 AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
10354927 ACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAG
196 ACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAG
*
10354992 -GTTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAACTTT
261 TGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTT
10355055 TTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCC
326 TTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCC
* * *
10355120 CGAGCATGGGATGTTCGAAAAATTGCTCGAACGAATAGATCATCTTAGATACTTTCAGGAACCGA
391 CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACCGA
*
10355185 AGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAAC
456 AGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAC
* * *
10355250 AATTCTTACGTAAATT-AGTTTTTGAC-A---T----GTTCGTCCAAGAACCAAGAGTGAAACAG
521 AATTCTCACGT-AATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* ** * * * ** *
10355306 TACTCTTGTAAATAAGTCTTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTG
585 TTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT-
10355371 C-CACGTAAATAAGTTTTT
649 CTCACGTAAATAAGTTTTT
10355389 CGTTCGAGGA
Statistics
Matches: 11091, Mismatches: 654, Indels: 687
0.89 0.05 0.06
Matches are distributed among these distances:
934 64 0.01
936 11 0.00
937 2 0.00
938 122 0.01
939 19 0.00
940 35 0.00
941 59 0.01
942 278 0.03
943 233 0.02
944 389 0.04
945 526 0.05
946 804 0.07
947 913 0.08
948 542 0.05
949 552 0.05
950 596 0.05
951 468 0.04
952 779 0.07
953 867 0.08
954 534 0.05
955 443 0.04
956 358 0.03
957 452 0.04
958 313 0.03
959 157 0.01
960 129 0.01
961 226 0.02
962 123 0.01
963 189 0.02
964 157 0.01
965 137 0.01
966 29 0.00
967 129 0.01
968 148 0.01
969 49 0.00
970 99 0.01
971 126 0.01
972 3 0.00
973 15 0.00
974 11 0.00
975 5 0.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (951 bp):
AAAGGCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCTGAGCAT
GGAATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACCGAAGTTATA
AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
ACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAG
TGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTT
TTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCC
CGAGCATGGGATGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGGATACTTTCAGGAACCGA
AGTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAATTAAGTTTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
TCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAAAGCTAAGAGAGAAACAATTCTCAC
GTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAA
ATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATG
CTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTGACAAGTTCGAAAGTTCGTCCAACA
ACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
Found at i:10350221 original size:63 final size:62
Alignment explanation
Indices: 10350122--10350304 Score: 208
Period size: 63 Copynumber: 3.0 Consensus size: 62
10350112 AAAAGTTGAC
* * *
10350122 AAGTTCGGATGTTCGTCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAA
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTTAAA
* * * * * * * *
10350185 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGCAAATAAGTCTTTGAC
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
* * *
10350247 AAGTTCGAAAGTTTGTCCAAG-ACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTTT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTT
10350305 CGTCGAGGAC
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
61 28 0.28
62 24 0.24
63 47 0.47
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.25
Consensus pattern (62 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAA
Found at i:10350556 original size:62 final size:62
Alignment explanation
Indices: 10350452--10350698 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
10350442 ATCGTAAAAG
* * *
10350452 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* *
10350514 TTTGACAAGTTTGGAAG-TCGTCTAAGAACTAAGAGAGAAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAATTAAGTT
* *
10350576 TTTGACAAG-TTGGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
* * * * *
10350637 TTTTACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
10350699 ATTAATTAAC
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
61 55 0.33
62 112 0.67
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
Found at i:10350620 original size:123 final size:124
Alignment explanation
Indices: 10350452--10350698 Score: 390
Period size: 123 Copynumber: 2.0 Consensus size: 124
10350442 ATCGTAAAAG
* * *
10350452 TTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
* *
10350517 GACAAGTTTGGAAG-TCGTCTAAGAACTAAGAGAGAAAACAATTCTCACGTAATTAAGTT
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAG-AAACAATTCTCACGTAACTAAGTT
*
10350576 TTTGACAAGTT-GGAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
* * *
10350640 TACAAGTTTGGACGTTTGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
66 GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
10350699 ATTAATTAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
123 84 0.74
124 29 0.26
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (124 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAAAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
Found at i:10351100 original size:212 final size:217
Alignment explanation
Indices: 10350657--10351129 Score: 588
Period size: 212 Copynumber: 2.2 Consensus size: 217
10350647 TTGGACGTTT
* * * *
10350657 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACATGTCCAAAACTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACATGACCAAAACTT
* * * **
10350722 GTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGA
66 GTTT-GACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTTAAA
** * ** * *
10350787 AATTTGCTTAAAGGAATGGATCGTCTTGAATGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTG
130 AATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTA
10350852 AAAGTTGACAAGTTCGAAAGTTC
195 AAAGTTGACAAGTTCGAAAGTTC
* * * *
10350875 GTCCAACAACCAAG-GACATACAATTCTCACGTAAATAAGTTTTTAATTTGA-A-GACCAAAACT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACATGACCAAAACT
10350937 TGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGTGATTTTCT-GAGCATAGAATG-TTAA
65 TGTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTCTGGAGCATAGAATGTTTAA
* *
10350999 AAATTT-C-TAGAAGGAATGGATTAACTTGAATACATTT-TGGAACCGAAGTTAT-AAAGAAATC
129 AAATTTGCTTA-AAGGAATGGATCAACTTGAATAC-TTTAAGGAACCGAAGTTATAAAAGAAATC
* * *
10351060 GTAAAAGTTTGACATGTTCGGATGTTC
192 GTAAAAG-TTGACAAGTTCGAAAGTTC
*
10351087 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
10351130 CTGACAAGCT
Statistics
Matches: 220, Mismatches: 29, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
211 16 0.07
212 61 0.28
213 36 0.16
214 44 0.20
215 5 0.02
216 14 0.06
217 29 0.13
218 15 0.07
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (217 bp):
GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACATGACCAAAACTT
GTTTGACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTGGAGCATAGAATGTTTAAAA
ATTTGCTTAAAGGAATGGATCAACTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
AAGTTGACAAGTTCGAAAGTTC
Found at i:10352180 original size:61 final size:62
Alignment explanation
Indices: 10352042--10352210 Score: 198
Period size: 61 Copynumber: 2.7 Consensus size: 62
10352032 GATGTGTTCT
* * *
10352042 GTTCGTCCAAGAAACAAGAGAGAAACAATTCTTACGTAAATAAGTATTTTAAAAAGTTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTC-TACGTAAATAAGTAGTTTAAAAAGTTCAAAA
* * * * *
10352105 GTTCGTCCAAGAACCAAGAGTGAAACAGTATC-ATGTAAATAAGT-GTTTGACAAGTTCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAAT-TCTACGTAAATAAGTAGTTTAAAAAGTTCAAAA
* * *
10352166 GTTCGTCCAAGAACCAGGAGAGAACCAATTACCACGTAAATAAGT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATT-CTACGTAAATAAGT
10352211 TTTTAATCCA
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
60 1 0.01
61 39 0.43
62 22 0.24
63 26 0.29
64 2 0.02
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTACGTAAATAAGTAGTTTAAAAAGTTCAAAA
Found at i:10352522 original size:62 final size:62
Alignment explanation
Indices: 10352384--10352617 Score: 323
Period size: 62 Copynumber: 3.8 Consensus size: 62
10352374 AACTTCAGAT
* *
10352384 GTTCGTCCAAGAA-CAAGAGAGAAAACAATTCTCACGTAATTAAGTTTTTTGACAAGTTTAGAA
1 GTTCGTCCAAGAACCAAGAGAGAAAACAA-TCTCACGTAACTAAG-TTTTTGACAAGTTTGGAA
*
10352447 GTTTGTCCAAGAACCAAGAGAGAAACACAATCTCACGTGAA-TAAGTTTTTGACAAG-TTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAA-ACAATCTCACGT-AACTAAGTTTTTGACAAGTTTGGAA
* *
10352509 GTTCATCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAAACAA-TCTCACGTAACTAAGTTTTTGACAAGTTTGGAA
* * *
10352571 GTTCGTCCAAGAGCTAAGAGAGAAAACATTCTCACGTAACTAAGTTT
1 GTTCGTCCAAGAACCAAGAGAGAAAACAATCTCACGTAACTAAGTTT
10352618 CTAATTAACT
Statistics
Matches: 155, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
60 6 0.04
61 25 0.16
62 67 0.43
63 28 0.18
64 23 0.15
65 6 0.04
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAAACAATCTCACGTAACTAAGTTTTTGACAAGTTTGGAA
Found at i:10352579 original size:124 final size:124
Alignment explanation
Indices: 10352384--10352617 Score: 357
Period size: 124 Copynumber: 1.9 Consensus size: 124
10352374 AACTTCAGAT
* *
10352384 GTTCGTCCAAGAACAAGAGAGAAAACAATTCTCACGTAATTAAGTTTTTTGACAAGTTTAGAAGT
1 GTTCATCCAAGAACAAGAGAGAAAACAATTCTCACGTAAATAAGTTTTTTGACAAGTTTAGAAGT
*
10352449 TTGTCCAAGAACCAAGAGAGAAACACAATCTCACGTGAA-TAAGTTTTTGACAAGTTGGAA
66 TCGTCCAAGAACCAAGAGAGAAA-ACAATCTCACGT-AACTAAGTTTTTGACAAGTTGGAA
*
10352509 GTTCATCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAG-TTTTTGACAAGTTTGGAAG
1 GTTCATCCAAGAA-CAAGAGAGAAAACAATTCTCACGTAAATAAGTTTTTTGACAAGTTTAGAAG
* * *
10352572 TTCGTCCAAGAGCTAAGAGAGAAAACATTCTCACGTAACTAAGTTT
65 TTCGTCCAAGAACCAAGAGAGAAAACAATCTCACGTAACTAAGTTT
10352618 CTAATTAACT
Statistics
Matches: 100, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
122 2 0.02
123 18 0.18
124 39 0.39
125 33 0.33
126 8 0.08
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (124 bp):
GTTCATCCAAGAACAAGAGAGAAAACAATTCTCACGTAAATAAGTTTTTTGACAAGTTTAGAAGT
TCGTCCAAGAACCAAGAGAGAAAACAATCTCACGTAACTAAGTTTTTGACAAGTTGGAA
Found at i:10352939 original size:216 final size:215
Alignment explanation
Indices: 10352558--10353051 Score: 538
Period size: 216 Copynumber: 2.3 Consensus size: 215
10352548 ATAAGTTTTT
* * * * * *
10352558 GACAAGTTTGGAAGTTCGTCCAAG-AGCTAAGAGAGAAA-ACATTCTCACGTAACTAAGTTTCTA
1 GACAAGTTCGAAAGTTCGTCCAAGAAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTA
* * * * *
10352621 ATTAACTGTCCAAAACTTGTTTGGTCAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTC
65 ATTAACAGGCCAAAACTTGTTT-GACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTC
*** * * **
10352686 GAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCATCTTGAATGCTTTAAGGAACCTCA
129 GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAA
* * * *
10352751 GTTATAAAAGAACTCGTGAAAGTTT
194 G-T-T-AAAGAAATCATAAAAGTTA
* * *
10352776 GACAAGTTCGAAAGTTCGTCCAA-CAACCGAG-GAGATACAATTCTCACGTAAATAAGTTTTTAA
1 GACAAGTTCGAAAGTTCGTCCAAGAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
10352839 TTTAA-AGGCCAAAAACTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TC
66 -TTAACAGGCC-AAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTC
* * **
10352901 TGAGCATGGAATGTTCAAAAAATTT-CT-AGAAGGAATGGATTAACTTGAATACTTTTTGGAACC
129 -GAGCATGGAATGTT-AAAAAATTTACTCA-AAAGAATGGATCAACTTGAATACTTTAAGGAACC
10352964 GAAGTTAAAGAAATCATAAAAGTTA
191 GAAGTTAAAGAAATCATAAAAGTTA
* * * *
10352989 GACGAGTTCGGATGTTCGTCCAAGAAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 GACAAGTTCGAAAGTTCGTCCAAGAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10353052 GACAAGTTCG
Statistics
Matches: 232, Mismatches: 35, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
213 35 0.15
214 7 0.03
215 32 0.14
216 81 0.35
217 36 0.16
218 41 0.18
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (215 bp):
GACAAGTTCGAAAGTTCGTCCAAGAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
TTAACAGGCCAAAACTTGTTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCGA
GCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATACTTTAAGGAACCGAAGT
TAAAGAAATCATAAAAGTTA
Found at i:10353096 original size:54 final size:55
Alignment explanation
Indices: 10353002--10353116 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 55
10352992 GAGTTCGGAT
* * *
10353002 GTTCGTCCAAGAAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * *
10353057 GTTCGTCCAAG-AACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10353111 GTTCGT
1 GTTCGT
10353117 AAGTTCGTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
54 43 0.80
55 11 0.20
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (55 bp):
GTTCGTCCAAGAAACCAAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Found at i:10353491 original size:61 final size:62
Alignment explanation
Indices: 10353316--10353562 Score: 372
Period size: 62 Copynumber: 4.0 Consensus size: 62
10353306 ATCGTAAATG
* * * *
10353316 TTTGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
*
10353378 TTTTACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-TAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AACTAAGTT
* * *
10353440 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGA-AAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
* * *
10353501 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
10353563 GCTAATTAAC
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
60 2 0.01
61 55 0.32
62 112 0.65
63 2 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
Found at i:10353536 original size:123 final size:124
Alignment explanation
Indices: 10353316--10353562 Score: 381
Period size: 123 Copynumber: 2.0 Consensus size: 124
10353306 ATCGTAAATG
* * *
10353316 TTTGACAAGTTCAGATGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAATTAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10353381 TACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAA-TAAGTT
66 GACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AACTAAGTT
** *
10353440 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGA-AAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10353504 GACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGAGAAACAATTCTCACGTAACTAAGTT
66 GACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
10353563 GCTAATTAAC
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
122 2 0.02
123 78 0.70
124 32 0.29
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (124 bp):
TTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
Found at i:10354043 original size:53 final size:55
Alignment explanation
Indices: 10353947--10354060 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 55
10353937 GAGTTCGGAT
* *
10353947 GTTCGTCCAAGAACAAGAGAGAGAAACAATTCTTACGTAAATAAGT-TTTGACAA
1 GTTCGTCCAAGAACAAGAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
* * * *
10354001 GTTCGTCCAAGAACCA-AGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACAA
1 GTTCGTCCAAGAACAAGAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
10354055 GTTCGT
1 GTTCGT
10354061 AAGTTCGTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 24 0.45
54 29 0.55
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (55 bp):
GTTCGTCCAAGAACAAGAGAGAGAAACAATACTCACGTAAATAAGTGTTTGACAA
Done.