Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 50 of 144
Found at i:10354347 original size:62 final size:61
Alignment explanation
Indices: 10354264--10354508 Score: 375
Period size: 62 Copynumber: 4.0 Consensus size: 61
10354254 CGTAAATGTC
* *
10354264 TGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTTTT
*
10354326 TTACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTGAATAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTT
* *
10354388 TGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AATAAGTTTT
* * *
10354450 TGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTT
1 TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA-TAAGTT
10354509 GCTAATTAAC
Statistics
Matches: 171, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
60 2 0.01
61 21 0.12
62 146 0.85
63 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (61 bp):
TGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATAAGTTTT
Found at i:10354828 original size:214 final size:217
Alignment explanation
Indices: 10354448--10354942 Score: 603
Period size: 214 Copynumber: 2.3 Consensus size: 217
10354438 TAAATAAGTT
* * * * * * **
10354448 TTTGACAAGTTTGGAAGTTCGTCCAAGAGCTAAGAGA-AAACAATTCTCACGTAACTAAGTTGCT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10354512 AATTAACAGTCCAAAACTTGTTTGGTCAAAATGACAACTATTTTGACCAAATGATGTGATTTCTC
66 AATTAACAGGCCAAAACTTGTTTGGTCAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC
*** ** **
10354577 GAGCATGGAATGTTTGGAAATTTACTCAAAAGAATGGATCGTCTTGAATGC-TTTGAGGAACTTC
131 GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATGCATTT-AGGAACTGA
* *
10354641 AGTTATAAAAGAACTCGTGAAAG
195 AGTTATAAAAGAAATCGTAAAAG
* *
10354664 TTTGACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10354728 AATTAA-AGGCCAAAACTTGTTT-G-CAAAATGACAAACTATTTAGACCAAATGATGTGATTT-T
66 AATTAACAGGCCAAAACTTGTTTGGTCAAAATGAC-AACTATTTAGACCAAATGATGTGATTTCT
** * * *
10354789 CTGAGCATGGAATGTTCAAAAAATTT-CT-AGATGGAATGGATTAACTTTAATGCATTTTGGAAC
130 C-GAGCATGGAATGTT-AAAAAATTTACTCA-AAAGAATGGATCAACTTGAATGCATTTAGGAAC
10354852 TGAAGTTATAAAAGAAATCGTAAAAG
192 TGAAGTTATAAAAGAAATCGTAAAAG
* * * * *
10354878 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10354943 GACAAGTTCG
Statistics
Matches: 239, Mismatches: 33, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
213 12 0.05
214 117 0.49
215 53 0.22
216 57 0.24
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (217 bp):
TTTGACAAGTTCGAAAGTTCGTCCAACAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGGCCAAAACTTGTTTGGTCAAAATGACAACTATTTAGACCAAATGATGTGATTTCTC
GAGCATGGAATGTTAAAAAATTTACTCAAAAGAATGGATCAACTTGAATGCATTTAGGAACTGAA
GTTATAAAAGAAATCGTAAAAG
Found at i:10354953 original size:54 final size:53
Alignment explanation
Indices: 10354894--10355005 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
10354884 AAGTTCGGAT
* * * *
10354894 GTTCGTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTTTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAG-GTTTGACAA
* * *
10354948 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGGTTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGGTTTGACAA
10355001 GTTCG
1 GTTCG
10355006 AAGTTCGTCC
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 13 0.25
54 38 0.75
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (53 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGGTTTGACAA
Found at i:10355317 original size:54 final size:53
Alignment explanation
Indices: 10355225--10355336 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 53
10355215 AGTTCGGATA
* * * *
10355225 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATTAGTTTTTGACATG
1 TTCGTCCAAGAACCAAGAGAGAAACAACTCTTA-GTAAATAAGTCTTTGACAAG
*
10355279 TTCGTCCAAGAACCAAGAGTGAAACAGTACTCTT-GTAAATAAGTCTTTGACAAG
1 TTCGTCCAAGAACCAAGAGAGAAACA--ACTCTTAGTAAATAAGTCTTTGACAAG
10355333 TTCG
1 TTCG
10355337 AAAGTTTGTC
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 46 0.90
56 5 0.10
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (53 bp):
TTCGTCCAAGAACCAAGAGAGAAACAACTCTTAGTAAATAAGTCTTTGACAAG
Found at i:10355553 original size:332 final size:331
Alignment explanation
Indices: 10354664--10355727 Score: 1414
Period size: 330 Copynumber: 3.2 Consensus size: 331
10354654 CTCGTGAAAG
* *
10354664 TTTGACAAGTTCGAAAGTTCGTCCAACAACCGAG-GAGATA-CAATT-CTCACGTAAATAAGTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACCAATTGC-CACGTAAATAAGTTT
* * * * * * *
10354726 TTAATTAAAGG-CCAAAACTTGTTTGCAAAATGACAAACTATTTAGACCAAATGATGTGATTTTC
64 TTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTCC
* * * ** * * *
10354790 TGAGCATGGAATGTTC-AAAAAATTTCTAGATGGAATGGATTAACTTTA-ATGCATTT-TGGAAC
128 CGAGCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATC-TTAGATGC-TTTCAGGAAC
*
10354852 TGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
191 CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGA
*
10354917 AATAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
256 AACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCA
*
10354982 TGTAAATAAGG
321 TGTAAATAAGC
*
10354993 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAACTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
10355057 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCCCG
66 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTCCCG
* * * *
10355122 AGCATGGGATGTTCG-AAAAATTGCTCGAACGAATAGATCATCTTAGATACTTTCAGGAACCGAA
130 AGCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAA
* *
10355186 GTTGTAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATATTCGTCCAAGAACCAAGAGAGAAACA
195 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * *
10355251 ATTCTTACGTAAATTAGTTTTTGACATGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCTTGTA
260 ATTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTA
10355316 AATAAGTC
325 AATAAG-C
*
10355324 TTTGACAAGTTCGAAAGTTTGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
** * * *
10355389 CGTTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTTGACAAAATTATGCGATTACCCG
66 AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATT-CCCG
*
10355454 AGCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATCTTGGATGCTTTCAGGAACCGAA
130 AGCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAA
*
10355519 GTTATAAAAGAAATCGTAAAAG-TTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACA
195 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * * *
10355583 ATTCTCACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATT
260 ATTCTTACGTAAATAAGTTTTTGACAAGTTC--------GTCCAAGAACCAAGAGTGAAACAGTA
* * *
10355647 CTCACGTAATTAAGTT
317 CTCATGTAAATAAG-C
* * * * * * *
10355663 TTTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAA-TCCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTAAATAAGTTTT
10355727 T
65 T
10355728 GACAAGTTTA
Statistics
Matches: 652, Mismatches: 63, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
328 19 0.03
329 52 0.08
330 222 0.34
331 15 0.02
332 189 0.29
333 65 0.10
338 2 0.00
339 82 0.13
340 6 0.01
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (331 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGTTTTT
AATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTCCCGA
GCATGGGATGTTCGAAAAAATTTCTCGAAAGAATGGATCATCTTAGATGCTTTCAGGAACCGAAG
TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
TTCTTACGTAAATAAGTTTTTGACAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAA
ATAAGC
Found at i:10355617 original size:62 final size:62
Alignment explanation
Indices: 10355541--10355964 Score: 600
Period size: 62 Copynumber: 6.9 Consensus size: 62
10355531 ATCGTAAAAG
* * *
10355541 TTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
10355603 TTGACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
10355664 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
** *
10355726 TTGACAAGTTTAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAG-TT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
10355787 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
10355849 TTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAAATAAGTTT
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * *
10355911 TTGACAAGTTTGGATGTTTGTCTAAGAACTAAGGGAGAAATAATTCTCACGTAA
1 TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10355965 CTAATTTATT
Statistics
Matches: 321, Mismatches: 39, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
61 109 0.34
62 212 0.66
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (62 bp):
TTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
Found at i:10355789 original size:123 final size:124
Alignment explanation
Indices: 10355541--10355964 Score: 665
Period size: 123 Copynumber: 3.4 Consensus size: 124
10355531 ATCGTAAAAG
* * * * * *
10355541 TTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
1 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
** * *
10355606 ACAAGTTCGGATGTTAGTCCAA-AACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
66 ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
10355664 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
1 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
*
10355729 ACAAGTTTAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAG-TT
66 ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
10355787 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
1 TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
* *
10355852 ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAGGTAAATAAGTTT
66 ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
* * * *
10355911 TTGACAAGTTTGGATGTT-TGTCTAAGAACTAAGGGAGAAATAATTCTCACGTAA
1 TTGACAAGTTTGGAAGTTCT-TCTAAGAACTAAGAGAGAAACAATCCTCACGTAA
10355965 CTAATTTATT
Statistics
Matches: 280, Mismatches: 18, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
123 197 0.70
124 83 0.30
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (124 bp):
TTGACAAGTTTGGAAGTTCTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTG
ACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTT
Found at i:10355853 original size:185 final size:185
Alignment explanation
Indices: 10355556--10355964 Score: 586
Period size: 185 Copynumber: 2.2 Consensus size: 185
10355546 AAGTTCGGAT
* *
10355556 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGATGTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTT
* * * *
10355621 AGTCCAAAACCAAGAGAGAAACAATTCTCACGTAATTAAGTTTTTGACAAGTTTGGAAGTTCTTC
66 AGTCCAAAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAGAAGTTCGTC
* *
10355686 TAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAAAA
131 CAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAAAA
* *
10355741 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAG-TTTTGACAAGTTTGGAAGTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTT
** * *
10355805 CTTCTAAGAACTAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAGAAGTTCGT
66 AGTCCAA-AACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAGAAGTTCGT
* * ** *
10355870 CCAAGAACCAAGAGAGAAACAATTCTCAGGTAAATAAGTTTTTGACAAGTTTGGAT
130 CCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAAAA
* * * * *
10355926 GTTTGTCTAAGAACTAAGGGAGAAATAATTCTCACGTAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10355965 CTAATTTATT
Statistics
Matches: 199, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
184 22 0.11
185 177 0.89
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (185 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTT
AGTCCAAAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAGAAGTTCGTC
CAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTGACAAGTTTAAAA
Found at i:10356326 original size:215 final size:218
Alignment explanation
Indices: 10355945--10356406 Score: 532
Period size: 215 Copynumber: 2.1 Consensus size: 218
10355935 AGAACTAAGG
* * * *
10355945 GAGAAATAATTCTCACGTAACTAA-TTTATTAATTAACAGTCCAAAACTTGTTTGGTCAAAATGA
1 GAGAAACAATTCTCACGTAAATAAGTTT-TTAATTAACAGGCCAAAACTTGTTTGGACAAAATGA
* * * * * * *
10356009 CAAACTATTTTGACCAAATGATGTGATTTCTGGAGCATGGAATGTTTGGAAATTTGCTTAAAGGA
65 CAAACTATTTAGACCAAATGATGGGATTTCTCGAACATGGAATGCTCGAAAATTTGCTTAAAGGA
** * * *
10356074 ATGGATCGTCTTGAAAGCTTTAAGGAACCTCAGTTATAAAAGAACTCGTGAAAGTTTG-TCAAGT
130 ATGGATCAACTTGAAAGCTTTAAGGAACCTAAGTTATAAAAGAAATCATGAAAGTTTGAT-AAGT
10356138 TCGAAAGTTCGTCCAACAACCAAG-
194 TCGAAAGTTCGTCCAACAACCAAGA
* *
10356162 GAGATACAATTCTCACGTAAATAAGTTTTTAATTTTA-AGGCCAAAACTTG-TT-GACAAAATGA
1 GAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGGCCAAAACTTGTTTGGACAAAATGA
*
10356224 CAAACTATTTAGACCAAATGATGGGATTTTTCGAACATGGAATGCTCGAAAAATTT-C-TAGAAG
65 CAAACTATTTAGACCAAATGATGGGATTTCTCGAACATGGAATGCTCG-AAAATTTGCTTA-AAG
* * *
10356287 GAATGGATTAACTTGAATA-CATTT-TGGAA-CTGAAGTTATAAAAGAAATCATTAAAGTTTGAT
128 GAATGGATCAACTTGAA-AGC-TTTAAGGAACCT-AAGTTATAAAAGAAATCATGAAAGTTTGAT
* * * *
10356349 ATGTTCGGATGTTCGTCCAAGAACCAAGA
190 AAGTTCGAAAGTTCGTCCAACAACCAAGA
*
10356378 GAGAAACAATTCTTACGTAAATAAGTTTT
1 GAGAAACAATTCTCACGTAAATAAGTTTT
10356407 CGACAAGTTC
Statistics
Matches: 208, Mismatches: 28, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
214 4 0.02
215 121 0.58
216 40 0.19
217 37 0.18
218 6 0.03
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (218 bp):
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTAACAGGCCAAAACTTGTTTGGACAAAATGAC
AAACTATTTAGACCAAATGATGGGATTTCTCGAACATGGAATGCTCGAAAATTTGCTTAAAGGAA
TGGATCAACTTGAAAGCTTTAAGGAACCTAAGTTATAAAAGAAATCATGAAAGTTTGATAAGTTC
GAAAGTTCGTCCAACAACCAAGA
Found at i:10356423 original size:54 final size:54
Alignment explanation
Indices: 10356359--10356471 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
10356349 ATGTTCGGAT
* * *
10356359 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGT-TTTCGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTT-GACAA
* * *
10356413 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGCTTGACAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTTGACAA
10356467 GTTCG
1 GTTCG
10356472 AAAGTTCATC
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 50 0.96
55 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (54 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTGCTTGACAA
Found at i:10356745 original size:331 final size:330
Alignment explanation
Indices: 10356133--10357877 Score: 884
Period size: 331 Copynumber: 5.2 Consensus size: 330
10356123 GAAAGTTTGT
*
10356133 CAAGTTCGAAAGTTCGTCCAACAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTT
1 CAAGTTCGAAAGTTCGTCCAAGAA-CAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAATTT
* * * * * **
10356197 TAAGGCCAAAACTTGTTGACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCGAACAT
64 CAAGGCCAAAACTTATTGACAAAAAGACAAACTATTTAGACCAAATGATGCGACTTCCCGAACAT
* * * *
10356262 GGAATGCTCGAAAAATTTCTAGAAGGAATGGATTAACTTGAATACATTTTGGAACTGAAGTTATA
129 GGAATGCTCGAAAAATTGCTAGAAGGAATGGATCAACTTGAATACATTTAGGAACCGAAGTTATA
* * *
10356327 AAAGAAATCATTAAAGTTTGATATGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
194 AAAGAAATCA-TAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
10356392 ACGTAAATAAGTTTTCGACAAGTTC-GTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAA
258 ACGTAAATAAGTTTTCGACAAGTTCGGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAA
10356456 GTGCTTGA
323 GTGCTTGA
* *
10356464 CAAGTTCGAAAGTTCATCCAAGAACAAGAGAGAACCATT-TGCCACGTAAATAAGTTTTTAA-TT
1 CAAGTTCGAAAGTTCGTCCAAGAACAAGAGAGAACAATTCT--CACGTAAATAAGTTTTTAATTT
* * *
10356527 CAAGGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATTATGCGACTTCCCGAGCA
64 CAAGG-CCAAAACTTATTGACAAAAAGACAAACTATTTAGACCAAATGATGCGACTTCCCGAACA
* * * * * * * *
10356592 TAGG-GTGTTCGAACAATTGGTCGATA-GATTGGATCATCTTGGATAC-TTTCAGGAACCGAAGT
128 T-GGAATGCTCGAAAAATTGCTAGA-AGGAATGGATCAACTTGAATACATTT-AGGAACCGAAGT
*
10356654 TGTAAAAGAAATCGA-AAAGTTTGACAAGTTCGGATGTTCGTCCAAAGAACCAAGAGAGAAACAA
190 TATAAAAGAAATC-ATAAAGTTTGACAAGTTCGGATGTTCGTCC-AAGAACCAAGAGAGAAACAA
*
10356718 TTCTCACGTAAATAAGTATTT-GACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATT
253 TTCTCACGTAAATAAGT-TTTCGACAAGTTC----G---GTCCAAGAACCAAGAGAGAAACAATA
* **
10356782 CTCACGTAATTAAGTTTTTGA
310 CTCACGTAAATAAGTGCTTGA
* * * *
10356803 CAAGTTTGGAAGTTCGTCTAAGAAATAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA
1 CAAGTTCGAAAGTTCGTCCAAG-AACAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT---AA
** ** ** * * *
10356868 GTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA-TAAGTTTTTGA-CAAGT
61 -TTTCAAG---G-CCAA-AACTTATTGACAAA-AA----GAC--AAACT-A--TTTAGACCAA--
* * ** ** *** ** * *
10356931 TTG-GGCGTTTGTCTAAGAAC-T--AA-GAGAGAAATAATT-CTCACGTAACTAA-GTTATTAA-
108 ATGATGCGACT-TC-CCGAACATGGAATGCTCGAAA-AATTGCT-A-G-AAGGAATG-GATCAAC
* ** * * * * * * *
10356988 TT-AATA-GTCCA-AAACTTG--TTTGGTCAAAATGACAAAC-T--A-TTTAACCAAATGAT-GT
166 TTGAATACATTTAGGAAC-CGAAGTT-AT-AAAA-GA-AATCATAAAGTTTGA-C-AA-GTTCG-
* *** * * * * ** ** **
10357043 GAT-TTC-T-CGAGCATGGAATGTTTG-GAAAC--TTGCGTAAAG-GAATGGGTCGTCTTCAA--
222 GATGTTCGTCCAAG-AACCAA-G--AGAGAAACAATT-C-TCACGTAAATAAGTTTTCGACAAGT
* ** * * * *
10357099 T-GCTTTAAGGAACCTCAGTTATA-AAAGAA-A-T--CGT-GA-AAGT--TTGA
281 TCGGTCCAA-GAACC-AAG--AGAGAAACAATACTCACGTAAATAAGTGCTTGA
*
10357143 CAAGTTCGAAAGTTCGTCCAACAACCAAG-GAGATACAATTCTCACGTAAATAAG-TTTTAATTT
1 CAAGTTCGAAAGTTCGTCCAAGAA-CAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAATTT
* * * *** *
10357206 AAAGGCCAAAACTGT-TT-ACAAAATGACAAACTATTTAGACCAAATGATGTGA-TTTTTGAGCA
64 CAAGGCCAAAACT-TATTGACAAAAAGACAAACTATTTAGACCAAATGATGCGACTTCCCGAACA
* * * * * * * *
10357268 TGGCATGTTCAAAAAATTTCTAGAAGGAATGGATTAACTTTAATACATTTTGGAACTGAAGTTAT
128 TGGAATGCTCGAAAAATTGCTAGAAGGAATGGATCAACTTGAATACATTTAGGAACCGAAGTTAT
* *
10357333 AAAAGAAATTCGTAACAGTTTTGACAAGTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATT
193 AAAAGAAA-TCATAA-AG-TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * * * *
10357398 CTTACGTAAATAAATTTTCGACAAGTTC-GTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAA
255 CTCACGTAAATAAGTTTTCGACAAGTTCGGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAA
*
10357462 TAAGTGTTTGA
320 TAAGTGCTTGA
10357473 CCAAGTTCGAAAGTTCGTCCAAGAACAGACAAGAGAGAACCAATTGC-CACGTAAAATAAGTTTT
1 -CAAGTTCGAAAGTTCGTCCAAG---A-ACAAGAGAGAA-CAATT-CTCACGT-AAATAAGTTTT
* *
10357537 TAA-TTCAAGGACCAAAACTTGTTTACAAAAAGACAAAAAACT-TTTAGACCAAA--ATTGCGAC
58 TAATTTCAAGG-CCAAAACTTATTGACAAAAAGAC---AAACTATTTAGACCAAATGA-TGCGAC
* * * * * * *
10357598 TTCCCGAGCATAGG--TGTTCGAACAATTGCTCGAAAGAATGGATCATCTTGGATAC-TTTAGGA
118 TTCCCGAACAT-GGAATGCTCGAAAAATTGCTAGAAGGAATGGATCAACTTGAATACATTTAGGA
*
10357660 ACCGAAGTTGTAAAAGAAATCGA-AAATGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG
182 ACCGAAGTTATAAAAGAAATC-ATAAA-GTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG
**
10357724 AGAAACAATTCTCACGTAAATAAGTTTTTAACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGA
245 AGAAACAATTCTCACGTAAATAAGTTTTCGACAAGTTC----G---GTCCAAGAACCAAGAGAGA
* **
10357789 AACAATTCT-ACAGTAAATTAAGGTTTTTGA
303 AACAATACTCAC-GTAAA-TAA-GTGCTTGA
* * * *
10357819 CAAGTT-GGAAGTTCGTCTAAGAAATAAGAGAGAAAACAATTCTCACGTAAATAAATTTT
1 CAAGTTCGAAAGTTCGTCCAAG-AACAAGAGAG--AACAATTCTCACGTAAATAAGTTTT
10357878 GACAAGTTTG
Statistics
Matches: 1054, Mismatches: 207, Indels: 296
0.68 0.13 0.19
Matches are distributed among these distances:
316 3 0.00
317 11 0.01
318 9 0.01
319 20 0.02
320 17 0.02
321 10 0.01
322 19 0.02
323 23 0.02
324 13 0.01
325 11 0.01
326 2 0.00
327 2 0.00
328 8 0.01
329 4 0.00
330 52 0.05
331 215 0.20
332 7 0.01
334 11 0.01
335 17 0.02
336 85 0.08
337 21 0.02
338 38 0.04
339 119 0.11
340 70 0.07
341 32 0.03
342 16 0.02
343 5 0.00
344 46 0.04
345 16 0.02
346 13 0.01
347 2 0.00
348 11 0.01
349 10 0.01
350 2 0.00
353 3 0.00
354 15 0.01
355 19 0.02
356 29 0.03
357 19 0.02
358 17 0.02
359 9 0.01
360 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (330 bp):
CAAGTTCGAAAGTTCGTCCAAGAACAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTTCA
AGGCCAAAACTTATTGACAAAAAGACAAACTATTTAGACCAAATGATGCGACTTCCCGAACATGG
AATGCTCGAAAAATTGCTAGAAGGAATGGATCAACTTGAATACATTTAGGAACCGAAGTTATAAA
AGAAATCATAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
TAAATAAGTTTTCGACAAGTTCGGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTG
CTTGA
Found at i:10356784 original size:62 final size:62
Alignment explanation
Indices: 10356673--10356982 Score: 451
Period size: 62 Copynumber: 5.0 Consensus size: 62
10356663 AATCGAAAAG
* *
10356673 TTTGACAAGTTCGGATGTTCGTCCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTA
1 TTTGACAAGTTCGGAAGTTCGTCC-AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10356736 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * **
10356798 TTTGACAAGTTTGGAAGTTCGTCTAAGAAATAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10356860 TTTGACAAGTT-GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** * * * * *
10356921 TTTGACAAGTTTGGGCGTTTGTCTAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10356983 ATTAATTAAT
Statistics
Matches: 226, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
61 58 0.26
62 145 0.64
63 23 0.10
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10356919 original size:123 final size:124
Alignment explanation
Indices: 10356673--10356982 Score: 478
Period size: 123 Copynumber: 2.5 Consensus size: 124
10356663 AATCGAAAAG
* * * * *
10356673 TTTGACAAGTTCGGATGTTCGTCCAAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTATT
1 TTTGACAAGTTTGGAAGTTCGT-CTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* *
10356738 TGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAATTAAGTT
65 TGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10356798 TTTGACAAGTTTGGAAGTTCGTCTAAGAAATAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10356863 GACAAGTT-GGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
66 GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * *
10356921 TTTGACAAGTTTGGGCGTTTGTCTAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTT
10356983 ATTAATTAAT
Statistics
Matches: 170, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
123 103 0.61
124 47 0.28
125 20 0.12
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (124 bp):
TTTGACAAGTTTGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10357297 original size:212 final size:217
Alignment explanation
Indices: 10356952--10357415 Score: 563
Period size: 212 Copynumber: 2.2 Consensus size: 217
10356942 TCTAAGAACT
* * * *
10356952 AAGAGAGAAATAATTCTCACGTAACTAAGTTATTAATTAATAGTCCAAAACTTGTTTGGTCAAAA
1 AAGAGAGAAACAATTCTCACGTAAATAAGTT-TTAATTAATAGGCCAAAACTTGTTT-GACAAAA
*** *
10357017 TGACAAACTATTTAACCAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAACTTGCGTAAAG
64 TGACAAACTATTTAACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGTAAAG
* ** * *
10357082 GAATGGGTCGTCTTCAATGC-TTTAAGGAACCT-CAGTTATAAAAGAAA-TCGTGAA-AG-TTTG
129 GAATGGATCAACTTCAATACATTT-AGGAA-CTGAAGTTATAAAAGAAATTCGT-AACAGTTTTG
10357142 ACAAGTTCGAAAGTTCGTCCAACAACC
191 ACAAGTTCGAAAGTTCGTCCAACAACC
*
10357169 AAG-GAGATACAATTCTCACGTAAATAAGTTTTAATTTAA-AGGCCAAAAC-TGTTT-ACAAAAT
1 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTAA-TTAATAGGCCAAAACTTGTTTGACAAAAT
* * *
10357230 GACAAACTATTTAGACCAAATGATGTGATTT-TTGAGCATGGCATGTTCAAAAAATTTC-TAGAA
65 GACAAACTATTTA-ACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGTA-AA
* * *
10357293 GGAATGGATTAACTTTAATACATTTTGGAACTGAAGTTATAAAAGAAATTCGTAACAGTTTTGAC
128 GGAATGGATCAACTTCAATACATTTAGGAACTGAAGTTATAAAAGAAATTCGTAACAGTTTTGAC
* *
10357358 AAGTTCGAATGTTCGTCCAAGAACC
193 AAGTTCGAAAGTTCGTCCAACAACC
* *
10357383 AAGAGAGAAACAATTCTTACGTAAATAAATTTT
1 AAGAGAGAAACAATTCTCACGTAAATAAGTTTT
10357416 CGACAAGTTC
Statistics
Matches: 213, Mismatches: 25, Indels: 20
0.83 0.10 0.08
Matches are distributed among these distances:
211 4 0.02
212 76 0.36
213 26 0.12
214 37 0.17
215 39 0.18
216 28 0.13
217 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (217 bp):
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTAATTAATAGGCCAAAACTTGTTTGACAAAATG
ACAAACTATTTAACCAAATGATGTGATTTCTCGAGCATGGAATGTTCAAAAAATTGCGTAAAGGA
ATGGATCAACTTCAATACATTTAGGAACTGAAGTTATAAAAGAAATTCGTAACAGTTTTGACAAG
TTCGAAAGTTCGTCCAACAACC
Found at i:10357461 original size:54 final size:55
Alignment explanation
Indices: 10357368--10357481 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 55
10357358 AAGTTCGAAT
* *
10357368 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAAT-TTTCGA-CAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTT-GACCAA
* * * *
10357422 GTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTGTTTGACCAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACCAA
10357477 GTTCG
1 GTTCG
10357482 AAAGTTCGTC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 41 0.79
55 11 0.21
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (55 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAATGTTTGACCAA
Found at i:10357789 original size:62 final size:62
Alignment explanation
Indices: 10357688--10357998 Score: 389
Period size: 62 Copynumber: 5.0 Consensus size: 62
10357678 ATCGAAAATG
10357688 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10357750 TTTAACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCT-ACAGTAAATTAAGGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-GTAAA-TAA-GTT
* * ** *
10357814 TTTGACAAGTT-GGAAGTTCGTCTAAGAAATAAGAGAGAAAACAATTCTCACGTAAATAA-AT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTCACGTAAATAAGTT
* * * *
10357875 TTTGACAAGTTTGGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATCAGTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10357937 TTTGACAAGTTTGGGCAT-TT-GTCTAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAGTT
1 TTTGACAAG-TTCGG-ATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10357999 ATTATTAACA
Statistics
Matches: 218, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
61 34 0.16
62 120 0.55
63 33 0.15
64 29 0.13
65 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10357911 original size:125 final size:124
Alignment explanation
Indices: 10357688--10357996 Score: 401
Period size: 125 Copynumber: 2.5 Consensus size: 124
10357678 ATCGAAAATG
* * * *
10357688 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGATTTT
*
10357753 AACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCT-ACAGTAAATTAAGGTT
66 AACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCAC-GTAAA-TAA-GTT
*
10357814 TTTGACAAGTT-GGAAGTTCGTCTAAGAAATAAGAGAGAAAACAATTCTCACGTAAATAA-ATTT
1 TTTGACAAGTTCGGAAGTTCGTCTAAGAACTAAGAGAG-AAACAATTCTCACGTAAATAAGATTT
* * * * *
10357877 TGACAAGTTTGGAAGTTCGTCCAAGAATCAAGAGAGAAACAATTCTCACGTAAATCAGTT
65 TAACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10357937 TTTGACAAGTTTGGGCA-TTTGTCTAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAG
1 TTTGACAAG-TTCGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAG
10357997 TTATTATTAA
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
123 31 0.19
124 23 0.14
125 74 0.46
126 34 0.21
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (124 bp):
TTTGACAAGTTCGGAAGTTCGTCTAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGATTTT
AACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10358354 original size:62 final size:62
Alignment explanation
Indices: 10358255--10358443 Score: 254
Period size: 62 Copynumber: 3.0 Consensus size: 62
10358245 ATCGTAAAAG
* * *
10358255 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * * * * *
10358317 TTTGACAATTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAACT-AGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* *
10358378 TTTCACAAGGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAA-GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
10358441 TTT
1 TTT
10358444 AATTCAAGGA
Statistics
Matches: 107, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
61 11 0.10
62 89 0.83
63 7 0.07
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:10358787 original size:61 final size:61
Alignment explanation
Indices: 10358605--10358833 Score: 279
Period size: 58 Copynumber: 3.8 Consensus size: 61
10358595 ACAATGGGAT
* *
10358605 GTTCGTCCAAGAACCAAGAGAGAAACATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAT
1 GTTCGTCCAAGAACCAAGAGAGAAACATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
* *
10358666 G-ACATCCAAGAA-CAA-AGAGAAACATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
* ***
10358724 GTTCGT-CAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAAC-ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
** ** *
10358785 GTTTTTCCAAGAACTGAGAGAG-AACTAATTCTCACATAAATAAGTTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAAC--ATTCTCACGTAAATAAGTTTTT
10358834 AATTCAGGAC
Statistics
Matches: 146, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
58 48 0.33
59 8 0.05
60 17 0.12
61 39 0.27
62 34 0.23
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (61 bp):
GTTCGTCCAAGAACCAAGAGAGAAACATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
Found at i:10359220 original size:277 final size:274
Alignment explanation
Indices: 10358708--10359665 Score: 1227
Period size: 277 Copynumber: 3.5 Consensus size: 274
10358698 TAAATAAGTT
* * * * *
10358708 TTTGACAAGTTTGGAAGTTCGT-CAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
** ** ** * *
10358772 GACAAGTTCAAAAGTTTTTCCAAGAACTGAGAGAG-AACTAATTCTCACATAAATAAGTTTTTAA
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAATTCTCACGTAAATAAGTTTTTAA
* * *
10358836 TTCAGGACCAAAACTTGTTTTAAAAAAGACAAACTATTTTAACCAAATTATGCGATTTTCTGAGC
131 TTCAAGACCAAAACTTG-TTTAAAAAAGA-AAAC-AATTTAACCAAATTATGCGATTTTCCGAGC
* * *
10358901 ATGGAGTGTTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
193 ATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTA
*
10358966 TAAAGAAATAGTAAAAG
258 TAAAGAAATCGTAAAAG
* *
10358983 TTTGACAAGTTTCTGATGTTCGTCCAAGAGCCAAGAGAG-AATAATTCTTACGTAAATAAGTTTT
1 TTTGACAAG-TTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTT
* *
10359047 TGACAAGTTCGGATATTTTGTCCAAGAACCAAGAGAGAAAC-AATTCTCACGTAAATAAGTTTTT
65 TGACAAGTTCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAAATTCTCACGTAAATAAGTTTTT
* * * *
10359111 AATTTAAAGACCAAAACTTGTTTACAAAATGAGAAACAATTTAGACCAAATGATG-GATTTTCCA
129 AA-TTCAAGACCAAAACTTGTTTA-AAAAAGA-AAACAATTTA-ACCAAATTATGCGATTTTCCG
* * * **
10359175 AGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATAGTTTTTGGAACCGAAG
190 AGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAG
10359240 TTATAAAAGAAATCGTAAAAG
255 TTAT-AAAGAAATCGTAAAAG
* * * *
10359261 TTTGACAAGTTAGGATGTTCGTCCAAGA-CCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * *
10359325 GACAAGTTTTGGAAGTTCGTCTAAGAACC-GGAGAGAAACAAACTCACTCTCACGTAAATAAGTT
66 GACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAA-T---TCTCACGTAAATAAGTT
* *
10359389 TTTAATTCAAGAACCAAAACTTGTTTAAAAAAGAAAACTATTTAAACAAAATTATGCGA-TTTCC
126 TTTAATTCAAG-ACCAAAACTTGTTTAAAAAAGAAAACAATTT-AACCAAATTATGCGATTTTCC
* * *
10359453 TGAGCATGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAA
189 -GAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGA
* *
10359518 AGTTAAAAAAAAATCGTAAAAG
253 AGTTATAAAGAAATCGTAAAAG
10359540 TTTGACAAGTTCGGATGTTCGTCC-AGAAGCCAAGAGAG-AACAATTCTTACGTAAATAAGTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAG-AGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTT
* *
10359603 TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATTCTCAAGTAAATAAGTTTTT
65 TGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAATTCTCACGTAAATAAGTTTTT
10359666 GACAAGTTCA
Statistics
Matches: 594, Mismatches: 67, Indels: 45
0.84 0.09 0.06
Matches are distributed among these distances:
274 19 0.03
275 9 0.02
276 61 0.10
277 195 0.33
278 91 0.15
279 99 0.17
280 83 0.14
281 37 0.06
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (274 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAATTCTCACGTAAATAAGTTTTTAA
TTCAAGACCAAAACTTGTTTAAAAAAGAAAACAATTTAACCAAATTATGCGATTTTCCGAGCATG
GAATGTTCGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCGAAGTTATAA
AGAAATCGTAAAAG
Found at i:10359674 original size:62 final size:61
Alignment explanation
Indices: 10359540--10359724 Score: 256
Period size: 62 Copynumber: 3.0 Consensus size: 61
10359530 ATCGTAAAAG
* *
10359540 TTTGACAAGTTCGGATGTTCGTCC-AGAAGCCAAGAGAG-AACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10359601 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10359663 TTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAA-AGAGAAACCAA-T-TCACGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTT
10359722 TTT
1 TTT
10359725 TAATTCAAGG
Statistics
Matches: 115, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
59 17 0.15
60 9 0.08
61 36 0.31
62 52 0.45
63 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10359911 original size:336 final size:335
Alignment explanation
Indices: 10359261--10360060 Score: 1084
Period size: 336 Copynumber: 2.4 Consensus size: 335
10359251 ATCGTAAAAG
* * * * *
10359261 TTTGACAAGTTAGGATGTTCGTCCAAGACCAAGAGAGAAACAATTTTTACGTACAGAAGTTTTTG
1 TTTGACAAGTTA-GAAGTTCGTCCAAGACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* * * * *
10359326 ACAAGTTTTGGAAGTTCGTCTAAGAACCGGAGAGAAACAAACTCACTCTCACGTAAATAAG-TTT
65 ACAAG--TTAGAAGTTCGTCCAAGAACC--A-AGAGAGAAAC-CAATCTCACGTAAATAAGTTTT
*
10359390 TTAATTCAAGAACCAAAACTTGTTTAAAAAAGAAAACTATTTAAACAAAATTATGCGATTTCCTG
124 TTAATTCAAGAACCAAAACTTGTTTAAAAAAGAAAACTATTTAAACAAAATTATGCGATTTCCCG
* *
10359455 AGCATGGAATGTTAGAAAAATCGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACCAAAG
189 AGCATGGAATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAG
*
10359520 TTAAAAAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAGCCAAGA-GAGAACAAT
254 TTAAAAAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAACCAAGAGGA-AACAAT
*
10359584 TCTTACGTAAATAAG-TT
318 TCTTACATAAATAAGTTT
* *
10359601 TTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTT
1 TTTGACAAGTTAG-AAGTTCGTCCAAG-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10359666 GACAAGTTCAGAAGTTCGTCCAAGAA-CAA-AGAGAAACCAAT-TCACGTAAATAAGTTTTTTAA
64 GACAAGTT-AGAAGTTCGTCCAAGAACCAAGAGAGAAACCAATCTCACGTAAATAAGTTTTTTAA
* * * *
10359728 TTCAAGGACCAAAACTTGTTTAACAAAAGACAAACTATTTAGACTAAATTATGTGATTTCCCGAG
128 TTCAAGAACCAAAACTTGTTTAA-AAAAGA-AAACTATTTAAACAAAATTATGCGATTTCCCGAG
* * * *
10359793 CATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTT
191 CATGGAATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTT
*
10359858 ATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA-AAACCAAGAGGAAACAATTC
256 A-AAAAAAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAACCAAGAGGAAACAATTC
10359922 TTACATAAATAAGTTT
320 TTACATAAATAAGTTT
* * * * *
10359938 TTTGTCAAGTTTGAATGTTTGTCCAATA-CACAGAGAGAATCAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTAGAA-GTTCGTCCAAGACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10360002 GACAAGTTA-AA-TTCG-CCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTTTTT
64 GACAAGTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACCAA-TCTCACGTAAATAAGTTTTTT
10360061 GACAAGTTCG
Statistics
Matches: 413, Mismatches: 32, Indels: 35
0.86 0.07 0.07
Matches are distributed among these distances:
332 7 0.02
333 23 0.06
334 42 0.10
335 34 0.08
336 161 0.39
337 66 0.16
339 4 0.01
340 38 0.09
341 38 0.09
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (335 bp):
TTTGACAAGTTAGAAGTTCGTCCAAGACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
CAAGTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACCAATCTCACGTAAATAAGTTTTTTAATTC
AAGAACCAAAACTTGTTTAAAAAAGAAAACTATTTAAACAAAATTATGCGATTTCCCGAGCATGG
AATGTTAGAAAAATCACTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTAAAAA
AAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAGAAACCAAGAGGAAACAATTCTTACAT
AAATAAGTTT
Found at i:10360001 original size:61 final size:62
Alignment explanation
Indices: 10359877--10360111 Score: 245
Period size: 61 Copynumber: 3.9 Consensus size: 62
10359867 ATCGTAAAAG
* * * *
10359877 TTTGACAAGTTCGGATGTTCGTCCAAAAC-CA-AGAGGAAACAATTCTTACATAAATAAGTTT
1 TTTGACAAGTTTGAATGTTCGTCCAAAACACAGAGA-GAAACAATTCTCACGTAAATAAGTTT
* * * *
10359938 TTTGTCAAGTTTGAATGTTTGTCCAATACACAGAGAGAATCAATTCTCACGTAAATAAG-TT
1 TTTGACAAGTTTGAATGTTCGTCCAAAACACAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
10359999 TTTGACAAG-TT-AA-ATTCG-CCAAGAAC-CAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTTGACAAGTTTGAATGTTCGTCCAA-AACAC-AGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
10360058 TTTGACAAGTTCGAAAGTTCATGCAAGAAC-CAAGAGAGAAACAATTCTCACGTA
1 TTTGACAAGTTTGAATGTTCGTCCAA-AACAC-AGAGAGAAACAATTCTCACGTA
10360112 CAGGTTTTGG
Statistics
Matches: 148, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
57 5 0.03
58 32 0.22
59 13 0.09
60 3 0.02
61 36 0.24
62 25 0.17
63 34 0.23
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGAATGTTCGTCCAAAACACAGAGAGAAACAATTCTCACGTAAATAAGTTT
Found at i:10360485 original size:510 final size:506
Alignment explanation
Indices: 10359618--10360623 Score: 1559
Period size: 510 Copynumber: 2.0 Consensus size: 506
10359608 AGTTCGTAAG
* * *
10359618 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTGACAAGTTCAGAAGTTC
1 TTCGTCAAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTCACAAGTTCAAAAGTTC
10359683 GTCCAAGAACAAAGAGAAACCAATTCACGTAAATAAGTTTTTTAATTCAAGGACCAAAACTTGTT
66 GTCCAAGAACAAAGAGAAACCAATTCACGTAAATAAGTTTTTTAATTCAAGGACCAAAACTTGTT
* * *
10359748 TAACAAAAGACAAACTATTTAGACTAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT
131 TAACAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
10359813 ACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
196 ACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
*
10359878 TTGACAAGTTCGGATGTTCGTCCAAAACCAAGAGGAAACAATTCTTACATAAATAAGTTTTTTGT
261 TTGACAAGTTCGGATGTTCGTCCAAAACCAAGAGGAAACAATTCTTACATAAATAAGTTTTTTGA
* * * *
10359943 CAAGTTTGAATGTTTGTCCAATACACAGAGAGAATCAATTCTCACGTAAATAAGTTTTTGACAAG
326 CAAGTTTGAATGTTCGTCCAAAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
10360008 -TT-AAATTCG-CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTGACAAGTTC
391 TTTGAAATTCGTCCAAGAACC-AGAGAGAAACAATTCTCACGTAAATAA--TTTTTGACAAGTTC
*
10360070 GAAAGTTCATGCAAGAACCAAGAGAGAAACAATTCTCACGTACAGGTTTTGGAT
453 GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTACAGGTTTTGGAT
* *
10360124 TTCGTCAAAGAATCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTCACAAGTTCAAAAGTTC
1 TTCGTCAAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTCACAAGTTCAAAAGTTC
* * *
10360189 GTCCAAGAACCAAGAGAGAACCATTTCTTACACGTAAATAAG-TTTTTAATTC-AGGACCAATAC
66 GTCCAAGAACAAAGAGA-AACCA---ATT-CACGTAAATAAGTTTTTTAATTCAAGGACCAAAAC
10360252 TTGTTT-ACAAAGAGACAAACTATTTAGACCAAATTAATGCGATTTCCCGAGCATGGAATGTTCG
126 TTGTTTAACAAA-AGACAAACTATTTAGACCAAATT-ATGCGATTTCCCGAGCATGGAATGTTCG
* *
10360316 AAAAATTACTAGAAAGAATGGATCATCTTGAATA-TTCTCTGGAATCGGAGTTATAAAAG-AATC
189 AAAAATTACTAGAAAGAATGGATCATCTTGAATACTT-TCTGGAACCGAAGTTATAAAAGAAATC
*
10360379 GTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTTA-TTGAAAT
253 GTAAAAGTTTGACAAGTTCGGATGTTCGTCCAA-AACCAAGAG-GAAACAATTCTTACAT-AAAT
10360442 AAG-TTTTTGACAAGTTTGCAA-GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATA
315 AAGTTTTTTGACAAGTTTG-AATGTTCGTCCAA-AACAAAGAGAGAAACAATTCTCACGTAAATA
* *
10360505 AGTTTTTGATAAGTTTGGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAATT
378 AGTTTTTGACAAGTTT--GAAATTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAATT
*
10360570 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
441 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTA
10360624 AGTAAGTTAT
Statistics
Matches: 459, Mismatches: 23, Indels: 30
0.90 0.04 0.06
Matches are distributed among these distances:
506 76 0.17
507 5 0.01
508 5 0.01
509 107 0.23
510 156 0.34
511 14 0.03
512 54 0.12
514 33 0.07
515 9 0.02
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (506 bp):
TTCGTCAAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTTTTTCACAAGTTCAAAAGTTC
GTCCAAGAACAAAGAGAAACCAATTCACGTAAATAAGTTTTTTAATTCAAGGACCAAAACTTGTT
TAACAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
ACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
TTGACAAGTTCGGATGTTCGTCCAAAACCAAGAGGAAACAATTCTTACATAAATAAGTTTTTTGA
CAAGTTTGAATGTTCGTCCAAAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG
TTTGAAATTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAATTTTTGACAAGTTCGAA
AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTACAGGTTTTGGAT
Found at i:10360509 original size:62 final size:61
Alignment explanation
Indices: 10360386--10360631 Score: 352
Period size: 61 Copynumber: 4.0 Consensus size: 61
10360376 ATCGTAAAAG
* * *
10360386 TTTGACAAGTTCGGATGTTCGTCCAAGAACAAGAGAGAAACAATTCTTA-TTGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* *
10360447 TTTGACAAGTTTGCAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10360509 TTTGATAAGTTTGGGAAGTTCGTCCAAGAACCAGAGAGAAACAATTCTCACGTAAATAA-TT
1 TTTGACAAG-TTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10360570 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
10360632 ATTAACTAAA
Statistics
Matches: 166, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
60 18 0.11
61 64 0.39
62 64 0.39
63 20 0.12
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10360605 original size:123 final size:124
Alignment explanation
Indices: 10360402--10360631 Score: 374
Period size: 123 Copynumber: 1.9 Consensus size: 124
10360392 AAGTTCGGAT
* * * *
10360402 GTTCGTCCAAGAACAAGAGAGAAACAATTCTTATTGAAATAAGTTTTTGACAAGTTTGCAAGTTC
1 GTTCGTCCAAGAACAAGAGAGAAACAATTCTCAGTGAAATAAGTTTTTGACAAGTTCGAAAGTTC
10360467 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTTGGGAA
66 GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTTGGGAA
*
10360526 GTTCGTCCAAGAACCAGAGAGAAACAATTCTCACGT-AAATAA-TTTTTGACAAGTTCGAAAGTT
1 GTTCGTCCAAGAACAAGAGAGAAACAATTCTCA-GTGAAATAAGTTTTTGACAAGTTCGAAAGTT
* *
10360589 CGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGTT
65 CGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
10360632 ATTAACTAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
123 60 0.61
124 37 0.38
125 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.26
Consensus pattern (124 bp):
GTTCGTCCAAGAACAAGAGAGAAACAATTCTCAGTGAAATAAGTTTTTGACAAGTTCGAAAGTTC
GTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGATAAGTTTGGGAA
Found at i:10360609 original size:61 final size:62
Alignment explanation
Indices: 10360386--10360631 Score: 356
Period size: 62 Copynumber: 4.0 Consensus size: 62
10360376 ATCGTAAAAG
* * *
10360386 TTTGACAAGTTCGGATGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTTA-TTGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT-AAATAAGTT
* * *
10360447 TTTGACAAGTTTGCAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10360509 TTTGATAAGTTTGGGAAGTTCGTCCAAGAACC-AGAGAGAAACAATTCTCACGTAAATAA-TT
1 TTTGACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10360570 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAGTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10360632 ATTAACTAAA
Statistics
Matches: 166, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
60 20 0.12
61 62 0.37
62 64 0.39
63 20 0.12
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10360812 original size:79 final size:79
Alignment explanation
Indices: 10360681--10360829 Score: 221
Period size: 79 Copynumber: 1.9 Consensus size: 79
10360671 CTATTTTGAA
* * * *
10360681 CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTTCTTAAAGGAATGGATCT-TCTTG
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTAAAGGAATGGAT-TATCTTG
10360745 AATACTATAAGAAAC
65 AATACTATAAGAAAC
*
10360760 CAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTC-TAGAAGGAATGGATTATCTTG
1 CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTA-AAGGAATGGATTATCTTG
10360824 AATACT
65 AATACT
10360830 TTTTGGAACT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
78 3 0.05
79 60 0.95
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (79 bp):
CAAATGATGGGATTTCTCGAGCATGGAATGTTCGAAAAATTTCTTAAAGGAATGGATTATCTTGA
ATACTATAAGAAAC
Found at i:10360966 original size:62 final size:62
Alignment explanation
Indices: 10360865--10361049 Score: 246
Period size: 62 Copynumber: 3.0 Consensus size: 62
10360855 ATAGTAAAAG
* * *
10360865 TTTGACAAGTTCGGATGTTCGTCC-AGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10360926 TTTGACAAGTTCGTAAGTTCATCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10360988 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10361050 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
61 21 0.20
62 85 0.80
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10361320 original size:61 final size:62
Alignment explanation
Indices: 10361204--10361449 Score: 388
Period size: 61 Copynumber: 4.0 Consensus size: 62
10361194 ATTATAAAAG
* * *
10361204 TTTGACAACTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10361266 TTTGACAAGTTTGGATGTTTGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10361327 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10361389 TTTGACAAGTTCGGAAGTTTGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10361450 ATTAATTAAC
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
61 88 0.51
62 84 0.49
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10361385 original size:339 final size:339
Alignment explanation
Indices: 10360758--10361388 Score: 1014
Period size: 339 Copynumber: 1.9 Consensus size: 339
10360748 ACTATAAGAA
* * * *
10360758 ACCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTT
1 ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
* * *
10360823 GAATACTTTTTGGAACTGAAGTTATAAAAGAAATAGTAAAAGTTTGACAAGTTCGGATGTTCGTC
66 GAATACTTTCTGGAACAGAAGTTATAAAAGAAATAGTAAAAGTTTGACAACTTCGGATGTTCGTC
*
10360888 CAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCATCCAAG
131 CAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAG
*
10360953 AACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAAC
196 AACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAAC
*
10361018 CAACAGAGAACCAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAAA
261 CAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAAA
10361083 GACAAACTATTTAG
326 GACAAACTATTTAG
* * * *
10361097 ACCAAATTATGTGATTTTCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTT
1 ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
10361162 GAATACTTTCTGGAACAGAAGTTATAAAAGAAATTA-TAAAAGTTTGACAACTTCGGATGTTCGT
66 GAATACTTTCTGGAACAGAAGTTATAAAAGAAA-TAGTAAAAGTTTGACAACTTCGGATGTTCGT
* * **
10361226 CCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCA
130 CC-AGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCA
* * *
10361291 AGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGA
194 AGAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGA
* **
10361355 ACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
259 ACCAACAGAGAAACAATTCTCACATAAATAAGTT
10361389 TTTGACAAGT
Statistics
Matches: 266, Mismatches: 24, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
339 202 0.76
340 64 0.24
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (339 bp):
ACCAAATGATGGGATTTTCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTT
GAATACTTTCTGGAACAGAAGTTATAAAAGAAATAGTAAAAGTTTGACAACTTCGGATGTTCGTC
CAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCATCCAAG
AACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAAC
CAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACTAAAA
GACAAACTATTTAG
Found at i:10361423 original size:123 final size:123
Alignment explanation
Indices: 10361204--10361449 Score: 420
Period size: 123 Copynumber: 2.0 Consensus size: 123
10361194 ATTATAAAAG
* *
10361204 TTTGACAACTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAACTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10361269 GACAAGTTTGGATGTTTGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
66 GACAAGTTCGGAAGTTTGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10361327 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 TTTGACAACTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10361392 GACAAGTTCGGAAGTTTGTCCAAGAACAAGAGAGAAACAATTCTCACGTAACTAAGTT
66 GACAAGTTCGGAAGTTTGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
10361450 ATTAATTAAC
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 115 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (123 bp):
TTTGACAACTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTTGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10361608 original size:401 final size:400
Alignment explanation
Indices: 10360865--10361668 Score: 1060
Period size: 401 Copynumber: 2.0 Consensus size: 400
10360855 ATAGTAAAAG
*
10360865 TTTGACAAGTTCGGATGTTCGTCCAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTG
1 TTTGACAAGTTCGGATGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* * *
10360930 ACAAGTTCGTAAGTTCATCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACA
66 ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACA
* *
10360995 AGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATTCAA
131 AGTTCGAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAA
* * * *
10361060 GGACCAAAACTTGTTTACTAAAAGACAAACTATTTAGACCAAATTATGTGATTTTCCGAGCATGG
196 AGACCAAAACTTGTTTACTAAAAGACAAACTATTTACACCAAATGATGTGATTTTCAGAGCATGG
* **
10361125 AATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTATAAA
261 AATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTTATAAA
* * * * * *
10361190 AGAAATTATAAAAGTTTGACAACTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAC
326 AGAAATCATAAAAGTTTGACAACTTCGAAAGTTCATACAAGAACCAAG-GAGAAACAATTCTCAC
10361255 GTAAATAAGTT
390 GTAAATAAGTT
* *
10361266 TTTGACAAGTTTGGATGTTTGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * * *
10361330 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAC
65 GACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCAC
* * * * *
10361395 AAGTTCGGAAGTTTGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATT-A
130 AAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCA
* * * * *
10361458 ACAGTCTAAAACTTGTTTAC-AAAATGACAAACTATTTTCACACAAATGATGTGATTTTTAGAGG
195 A-AGACCAAAACTTGTTTACTAAAA-GACAAACTATTTACAC-CAAATGATGTGATTTTCAGAGC
* * * ** ** * **
10361522 ATTGAATGTTTGGAAATTTGTTTA-AGGGAATGGATCTTCTTGAATACTTTAAGGAACCTAAGTT
257 ATGGAATGTTTGAAAAATT-ACTAGAAAGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTT
* * * * *
10361586 ATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTTCATACAAGAACCAAGGAGATACAATTC
321 ATAAAAGAAATCATAAAAGTTTGACAACTTCGAAAGTTCATACAAGAACCAAGGAGAAACAATTC
10361651 TCACGTAAATAAGTT
386 TCACGTAAATAAGTT
10361666 TTT
1 TTT
10361669 AATTTAAAGA
Statistics
Matches: 347, Mismatches: 51, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
399 6 0.02
400 92 0.27
401 243 0.70
402 6 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (400 bp):
TTTGACAAGTTCGGATGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
ACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTCACA
AGTTCGAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTCAA
AGACCAAAACTTGTTTACTAAAAGACAAACTATTTACACCAAATGATGTGATTTTCAGAGCATGG
AATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTAAGGAACAGAAGTTATAAA
AGAAATCATAAAAGTTTGACAACTTCGAAAGTTCATACAAGAACCAAGGAGAAACAATTCTCACG
TAAATAAGTT
Found at i:10361848 original size:214 final size:217
Alignment explanation
Indices: 10361389--10361883 Score: 641
Period size: 214 Copynumber: 2.3 Consensus size: 217
10361379 TAAATAAGTT
* *
10361389 TTTGACAAGTTCGGAAGTT-TGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAACTAAGTTAT
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10361452 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACACAAATGATGTGATTTTT
65 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACACAAATGATGGGATTTTT
* * * * ** *
10361517 AGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAACCTA
130 AGAGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTA
*
10361582 AGTTATAAAAGAAATCGTGAAAG
195 AGTTATAAAAGAAATCGTAAAAG
* * * * *
10361605 TTTGACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10361669 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGAC-CAAATGATGGGA-TTTT
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACACAAATGATGGGATTTTT
* **
10361731 CGAGCATGGAATGTTTGAAAAATT-TCCAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAA-C
130 AGAGCATGGAATGTTTGAAAAATTGTCCA-AAGGAATGGATCT-TCTTGAATACTTTAAGGAACC
*
10361793 TGAAGTTATAAAAG-AACCTGTAAAAG
193 T-AAGTTATAAAAGAAATC-GTAAAAG
*
10361819 TTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10361884 TGACAAGTTT
Statistics
Matches: 241, Mismatches: 30, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
213 8 0.03
214 97 0.40
215 40 0.17
216 88 0.37
217 8 0.03
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (217 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACACAAATGATGGGATTTTTA
GAGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTTAAGGAACCTAA
GTTATAAAAGAAATCGTAAAAG
Found at i:10361909 original size:63 final size:63
Alignment explanation
Indices: 10361819--10362008 Score: 235
Period size: 63 Copynumber: 3.0 Consensus size: 63
10361809 CCTGTAAAAG
* *
10361819 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * *
10361882 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAG-TT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* *
10361944 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACGTAAATAAGTTT
10362007 TT
1 TT
10362009 AATTCAGGAC
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
61 6 0.06
62 46 0.43
63 53 0.50
64 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (63 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
Found at i:10362001 original size:62 final size:61
Alignment explanation
Indices: 10361823--10362008 Score: 223
Period size: 62 Copynumber: 3.0 Consensus size: 61
10361813 TAAAAGTTTG
* * * *
10361823 ACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTG
1 ACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAG-TTTTTC
* * * * *
10361886 ACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGA-AAATAAGTTTTTC
1 ACAAG-TTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC-ATAAATAAGTTTTTC
10361948 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTTTTT
1 ACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTT
10362009 AATTCAGGAC
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
61 7 0.07
62 51 0.49
63 44 0.42
64 2 0.02
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (61 bp):
ACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTC
Found at i:10362246 original size:60 final size:61
Alignment explanation
Indices: 10362157--10362340 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10362147 ATCGTAAAAG
* * * * * *
10362157 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10362217 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10362279 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10362341 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10362591 original size:62 final size:62
Alignment explanation
Indices: 10362494--10362741 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10362484 ATTATAAAAG
* *
10362494 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10362556 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10362618 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10362680 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10362742 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10362613 original size:339 final size:339
Alignment explanation
Indices: 10361609--10362682 Score: 1561
Period size: 339 Copynumber: 3.2 Consensus size: 339
10361599 TGAAAGTTTG
* * *
10361609 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATA-CAATTCTCACGTAAATAAGTTTTTAAT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGA-ACCAATTCTCACATAAATAAGTTTTTAAT
* * * * * *
10361672 TTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-TCGAGC
65 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGC
* * * * * *
10361736 ATGGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGTTA
130 ATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTA
* *
10361801 TAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTC
195 TAAAAGAA-TTGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * *
10361866 TCACGTAAATAAGTTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTA
259 TTACGTAAATAAG-TTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTC
*
10361931 ACGAAAATAAGTTTTTC
323 ACGTAAATAAGTTTTTC
* *
10361948 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
* *
10362013 C-AGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACC-AATTATGCGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCA
* * * * * *
10362076 TGGAATGTTCGAAAAA-TGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAGCCGAATTTAA
131 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* * * *
10362140 AAAAGAAATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTCT
196 AAAAG-AATTGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * *
10362203 TACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCAC
260 TACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
10362268 GTAAATAAGTTTTTC
325 GTAAATAAGTTTTTC
* *
10362283 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
*
10362348 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCA
*
10362413 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
131 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10362478 AAAAGAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
196 AAAAGAATTGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTT
* * * *
10362543 ACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACG
261 ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACG
*
10362608 TAAATAAGTTTTTG
326 TAAATAAGTTTTTC
* * **
10362622 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTT
10362683 GACAAGTTCG
Statistics
Matches: 655, Mismatches: 71, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
335 123 0.19
336 65 0.10
337 71 0.11
338 137 0.21
339 229 0.35
340 30 0.05
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (339 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCA
TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
AAAAGAATTGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTT
ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACG
TAAATAAGTTTTTC
Found at i:10362941 original size:401 final size:401
Alignment explanation
Indices: 10362189--10364249 Score: 1103
Period size: 402 Copynumber: 4.9 Consensus size: 401
10362179 CCCAGAACTA
* * * *
10362189 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10362254 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10362319 CCAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* * *
10362384 TTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCA
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCA
** * * *
10362449 TCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAATTATAAAAGTTTGACAAGTTCGGATGTTC
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAATCATAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10362514 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
326 ATACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
10362579 CAAGAACAAAG
391 CAAGAACAAAG
*
10362590 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10362655 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10362720 ACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCTAAAACTTGTTTACAAAATGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATTCAA-AGACCAAAACTTGTTTACAAAAAGACAAACTA
* ** * * * * ** **
10362784 TTTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTA-AGGGAATGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAATGGAT
* ** * * *
10362848 CTTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAG-AATCATAAAAGTTTGACAAGTTCGAAAG
* * * **** **
10362913 TTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAAAG-ACCAAAA
323 TTCATACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA---CAAGTTTGGATG
* **
10362976 CTTGT----TTACAAA-
385 TTTGTCCAAGAACAAAG
* * * * * * * * *
10362988 ATGACAAACTATT-TAGAC-CAAATGATGGGATTTTCGAGCATGGAATGTTTGAAAAATT--TCC
1 A-GAGAAACAATTCT-CACGTAAAT-A--AG-TTTTTGA-C----AA-GTTCG-GAAGTTCGTCC
** * ** * * *
10363049 -AGAAGGAATGGATTATGAATACTTTTTGGAACTGAAGTTATAA-AAGAACCTGTAAAAGTTTGA
53 AAGAACCAA--GA-GA-GAA-AC--AAT---ACTCACG-TA-AATAAG----T-T-----TTTCA
* * * * * * * *
10363112 CAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGA--C
96 CAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAAACAATTCTCACATAAATAAGTTATTAATTC
***** * * * * * * *
10363175 -AAGTTTTGAAGTTCG--TACAAGAACCAGGAGAGAAACAATACTA-ACGAAAAT-AAGT-TTTT
161 AAAGACCAAAACTT-GTTTAC-A-AA--A--AGACAAACTAT-TTACAC-CAAATGATGTGATTT
* * * * * * * ** ** * ** * * *
10363234 CACAAG-TTCGAAAGTTAGTCCAAGAACCAAGAGAAAAACAAT-TCTCA-CATAAATAAGTTTTT
217 CCCGAGCATGGAATGTT--T-GAAAAATTACTAG--AAAGAATGGATCATCTTGAAT-A----CT
* * * * * * ** *
10363296 AATTCAAGGACCAAAACTTGTTTACCAAAAG-A-CA-AACTA-TTTAGACCAAATTATGCGATTT
272 --TT-AAGGAACAGAA---G-TTA-TAAAAGAATCATAA-AAGTTT-GA-CAAGTT-CGAAAGTT
* * * *
10363357 CCTGAGCATGGAATGTTCGAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCG
325 CAT-A-CA-AGAA----CCAAGA--G--AGAAAC-----A--A---T---T-C--TC----A-CG
* ** * * * * *** *
10363422 AATATAAAAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTC-ATCCCAGAACTA
358 ----TAAATAAGTTTTTG-ACAAGTTTG-GATGTT----TGTCCAAGAACA-AA--G
* * * *
10363478 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10363543 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10363608 CCAATTCTCACATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* * *
10363673 TTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCA
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCA
** * * * *
10363738 TCTTGAATACTTTCTGGAACAGAAGTTAGAAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAG-AATCATAAAAGTTTGACAAGTTCGAAAGTT
* * * *
10363803 CGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTGTTGACAAGTTTGGATGTTTGT
325 CATACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGT
*
10363868 CCAAGAATAAAG
390 CCAAGAACAAAG
*
10363880 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10363945 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10364010 ACAATTCTCACGTAACTAAGTTATTAATT-AACAGTCTAAAACTTGTTTACAAAATGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATTCAA-AGACCAAAACTTGTTTACAAAAAGACAAACTA
* ** * * * * ** **
10364074 TTTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTA-AGGGAATGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAATGGAT
* ** * * *
10364138 CTTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAG-AATCATAAAAGTTTGACAAGTTCGAAAG
*
10364203 TTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
323 TTCATACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10364250 AATTTAAAGA
Statistics
Matches: 1223, Mismatches: 287, Indels: 300
0.68 0.16 0.17
Matches are distributed among these distances:
398 6 0.00
399 17 0.01
400 2 0.00
401 309 0.25
402 332 0.27
403 8 0.01
404 9 0.01
405 2 0.00
406 6 0.00
407 5 0.00
408 12 0.01
409 13 0.01
410 13 0.01
411 2 0.00
413 1 0.00
414 2 0.00
415 1 0.00
416 4 0.00
417 5 0.00
418 2 0.00
419 1 0.00
421 2 0.00
422 2 0.00
423 3 0.00
424 9 0.01
425 5 0.00
427 68 0.06
428 7 0.01
429 15 0.01
430 13 0.01
431 3 0.00
432 4 0.00
435 7 0.01
437 3 0.00
438 8 0.01
439 8 0.01
440 4 0.00
441 7 0.01
442 10 0.01
443 9 0.01
444 4 0.00
445 8 0.01
446 8 0.01
447 7 0.01
448 4 0.00
449 8 0.01
450 7 0.01
451 2 0.00
452 1 0.00
453 1 0.00
454 5 0.00
456 5 0.00
457 4 0.00
458 18 0.01
459 16 0.01
460 7 0.01
461 65 0.05
463 4 0.00
464 8 0.01
465 3 0.00
466 1 0.00
467 2 0.00
468 1 0.00
470 4 0.00
471 5 0.00
472 5 0.00
474 1 0.00
475 3 0.00
477 6 0.00
478 3 0.00
479 17 0.01
480 7 0.01
481 5 0.00
482 5 0.00
483 3 0.00
485 1 0.00
486 9 0.01
487 3 0.00
489 12 0.01
490 6 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTCAAAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAATCATAAAAGTTTGACAAGTTCGAAAGTTC
ATACAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10363196 original size:62 final size:62
Alignment explanation
Indices: 10363107--10363295 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 62
10363097 CCTGTAAAAG
* * *
10363107 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10363169 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10363231 TTTCACAAG-TTCGAAAGTTAGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10363293 TTT
1 TTT
10363296 AATTCAAGGA
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
61 3 0.03
62 102 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10363535 original size:60 final size:61
Alignment explanation
Indices: 10363446--10363629 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10363436 ATCGTAAAAG
* * * * * *
10363446 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10363506 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10363568 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10363630 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10363549 original size:337 final size:337
Alignment explanation
Indices: 10362900--10363972 Score: 1475
Period size: 337 Copynumber: 3.2 Consensus size: 337
10362890 TGAAAGTTTG
* * *
10362900 ACAAGTTTGAAAGTTCA-TACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAAT
1 ACAAGTTTGAAAGTT-AGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * * *
10362963 TTAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGC
65 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCGAGC
* * * * * *
10363027 ATGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTA
129 ATGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTA
* * *
10363089 TAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTC
194 AAAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * *
10363154 TTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAA
258 TTACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
*
10363219 CGAAAATAAGTTTTTC
322 CGTAAATAAGTTTTTC
* *
10363235 ACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10363300 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC-GAGCA
* * * *
10363365 TGGAATGTTCG-AAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * *
10363428 AAAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
194 AAAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
10363491 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
258 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
10363556 CGTAAATAAGTTTTTC
322 CGTAAATAAGTTTTTC
* * * *
10363572 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10363637 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTT-CCGAGCA
* *
10363702 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAG
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAA
** *
10363767 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * * *
10363832 TACGTAAATAAGTTGTTGACAAGTTTGGATGTTTGTCCAAGAA-TAAAGAGAGAAACAATTCTCA
259 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACT-AGGAGAGAAACAATACTCA
*
10363896 CGTAAATAAGTTTTTG
322 CGTAAATAAGTTTTTC
* * **
10363912 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10363973 GACAAGTTCG
Statistics
Matches: 656, Mismatches: 65, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
334 1 0.00
335 26 0.04
336 97 0.15
337 236 0.36
338 92 0.14
339 63 0.10
340 139 0.21
341 2 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (337 bp):
ACAAGTTTGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCGAGCAT
GGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAAA
AAAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTA
AATAAGTTTTTC
Found at i:10363882 original size:62 final size:62
Alignment explanation
Indices: 10363784--10364031 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10363774 ATTATAAAAG
* *
10363784 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * **
10363846 GTTGACAAGTTTGGATGTTTGTCCAAGAATAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10363908 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10363970 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10364032 ATTAATTAAC
Statistics
Matches: 170, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 170 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10364486 original size:62 final size:62
Alignment explanation
Indices: 10364397--10364585 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10364387 CCTGTAAAAG
* * *
10364397 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10364459 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10364521 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10364583 TTT
1 TTT
10364586 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10364826 original size:60 final size:61
Alignment explanation
Indices: 10364737--10364920 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10364727 ATCGTAAAAG
* * * * * *
10364737 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10364797 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10364859 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10364921 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10364834 original size:338 final size:336
Alignment explanation
Indices: 10364190--10365263 Score: 1525
Period size: 338 Copynumber: 3.2 Consensus size: 336
10364180 TGAAAGTTTG
* * * *
10364190 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10364254 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTAT-GTATTTCCGAGCA
* * * * * *
10364318 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10364380 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10364445 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
258 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10364510 GAAAATAAGTTTTTC
322 GTAAATAAGTTTTTC
* *
10364525 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10364590 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCTATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATG-TATTTCC-GAGCA
* * * *
10364655 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * *
10364719 AAAAAGAGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
193 TAAAAGA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10364782 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
257 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10364847 CGTAAATAAGTTTTTC
321 CGTAAATAAGTTTTTC
* * *
10364863 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
*
10364928 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGT-ATTT-CCGAGCA
*
10364993 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10365058 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10365123 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
258 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10365188 GTAAATAAGTTTTTG
322 GTAAATAAGTTTTTC
* **
10365203 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10365264 GACAAGTTCG
Statistics
Matches: 661, Mismatches: 61, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
335 28 0.04
336 77 0.12
337 40 0.06
338 302 0.46
339 11 0.02
340 199 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (336 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGTATTTCCGAGCATG
GAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATAA
AAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTAA
ATAAGTTTTTC
Found at i:10365172 original size:62 final size:62
Alignment explanation
Indices: 10365075--10365322 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10365065 ATTATAAAAG
* *
10365075 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10365137 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10365199 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10365261 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10365323 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10365271 original size:402 final size:401
Alignment explanation
Indices: 10364769--10365540 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10364759 CCCAGAACTA
* * * *
10364769 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10364834 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10364899 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10364963 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10365027 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10365092 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10365157 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10365171 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10365236 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10365301 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10365366 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10365431 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10365496 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10365541 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10365777 original size:62 final size:62
Alignment explanation
Indices: 10365688--10365876 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10365678 CCTGTAAAAG
* * *
10365688 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10365750 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10365812 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10365874 TTT
1 TTT
10365877 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10366117 original size:60 final size:61
Alignment explanation
Indices: 10366028--10366211 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10366018 ATCGTAAAAG
* * * * * *
10366028 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10366088 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10366150 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10366212 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10366125 original size:338 final size:336
Alignment explanation
Indices: 10365481--10366554 Score: 1516
Period size: 338 Copynumber: 3.2 Consensus size: 336
10365471 TGAAAGTTTG
* * * *
10365481 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10365545 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTAT-GTATTTCCGAGCA
* * * * * *
10365609 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10365671 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10365736 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
258 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10365801 GAAAATAAGTTTTTC
322 GTAAATAAGTTTTTC
* *
10365816 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10365881 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCTATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATG-TATTTCC-GAGCA
* * * *
10365946 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * *
10366010 AAAAAGAGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
193 TAAAAGA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10366073 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
257 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10366138 CGTAAATAAGTTTTTC
321 CGTAAATAAGTTTTTC
* * *
10366154 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
*
10366219 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGT-ATTT-CCGAGCA
*
10366284 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
129 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10366349 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10366414 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
258 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
* *
10366479 GTAAATCAGTTTTTG
322 GTAAATAAGTTTTTC
* **
10366494 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10366555 GACAAGTTCG
Statistics
Matches: 660, Mismatches: 62, Indels: 29
0.88 0.08 0.04
Matches are distributed among these distances:
335 28 0.04
336 77 0.12
337 40 0.06
338 302 0.46
339 11 0.02
340 198 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (336 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGTATTTCCGAGCATG
GAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATAA
AAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTAA
ATAAGTTTTTC
Found at i:10366463 original size:62 final size:62
Alignment explanation
Indices: 10366366--10366613 Score: 397
Period size: 62 Copynumber: 4.0 Consensus size: 62
10366356 ATTATAAAAG
* *
10366366 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10366428 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATCAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10366490 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10366552 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10366614 AATTAATTAA
Statistics
Matches: 172, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 172 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10366562 original size:402 final size:402
Alignment explanation
Indices: 10366060--10366832 Score: 1057
Period size: 402 Copynumber: 1.9 Consensus size: 402
10366050 CCCAGAACTA
* * * *
10366060 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10366125 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10366190 CCAATTCTCACATAAATAAGTT-ATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACT
131 ACAATTCTCACATAAATAAGTTAATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACT
* * *
10366253 ATTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGA
195 ATTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGA
** * * *
10366317 TCATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGAT
259 TCATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAA
* * *
10366382 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTT
324 GTTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTT
10366447 TGTCCAAGAACAAAG
388 TGTCCAAGAACAAAG
* *
10366462 AGAGAAACAATTCTCACGTAAATCAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10366527 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10366592 ACAATTCTCACGTAACTAAGTTAATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTA
131 ACAATTCTCACATAAATAAGTTAATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* ** * * * * ** **
10366657 TTTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATC
196 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATC
* ** * * *
10366722 TTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGT
261 ATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGT
*
10366787 TCATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 TCATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10366833 AATTTAAAGA
Statistics
Matches: 319, Mismatches: 49, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
402 166 0.52
403 151 0.47
404 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (402 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTAATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTA
TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATC
ATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGT
TCATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGT
CCAAGAACAAAG
Found at i:10367009 original size:211 final size:215
Alignment explanation
Indices: 10366552--10367044 Score: 626
Period size: 211 Copynumber: 2.3 Consensus size: 215
10366542 TAAATAAGTT
* *
10366552 TTTGACAAGTTCGGAAGTT-TGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTAA
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-T
* * * *
10366616 TTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTT
64 TTAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTT
* * * * ** * *
10366681 CGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAACCTA
129 CGAGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGA-CTTCATGAATACTTTAAGGAACCTA
*
10366746 AGTTATAAAAGAAATCGTGAAAG
193 AGTTATAAAAGAAATCGTAAAAG
* * * * *
10366769 TTTGACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10366833 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
**
10366896 GAGCATGGAATGTTTGAAAAATT-TCCAGAAGGAATGGA-TT-ATGAATACTTTTTGGAA-CTGA
130 GAGCATGGAATGTTTGAAAAATTGTCCA-AAGGAATGGACTTCATGAATACTTTAAGGAACCT-A
*
10366957 AGTTATAAAAG-AACCTGTAAAAG
193 AGTTATAAAAGAAATC-GTAAAAG
* *
10366980 TTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10367045 GACAAGTTTT
Statistics
Matches: 239, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
210 5 0.02
211 61 0.26
212 30 0.13
213 2 0.01
214 33 0.14
215 50 0.21
216 29 0.12
217 29 0.12
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTCG
AGCATGGAATGTTTGAAAAATTGTCCAAAGGAATGGACTTCATGAATACTTTAAGGAACCTAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10367069 original size:62 final size:62
Alignment explanation
Indices: 10366980--10367168 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10366970 CCTGTAAAAG
* * *
10366980 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10367042 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10367104 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10367166 TTT
1 TTT
10367169 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10367409 original size:60 final size:61
Alignment explanation
Indices: 10367320--10367503 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10367310 ATCGTAAAAG
* * * * * *
10367320 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10367380 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10367442 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10367504 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10367417 original size:338 final size:337
Alignment explanation
Indices: 10366773--10367846 Score: 1534
Period size: 338 Copynumber: 3.2 Consensus size: 337
10366763 TGAAAGTTTG
* * * *
10366773 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10366837 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCGAGCA
* * * * * *
10366901 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10366963 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10367028 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
259 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10367093 GAAAATAAGTTTTTC
323 GTAAATAAGTTTTTC
* *
10367108 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10367173 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC-GAGCA
* * * *
10367238 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * * *
10367302 AAAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
194 TAAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10367365 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
258 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10367430 CGTAAATAAGTTTTTC
322 CGTAAATAAGTTTTTC
* * *
10367446 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10367511 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTT-CCGAGCA
*
10367576 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10367641 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10367706 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
259 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10367771 GTAAATAAGTTTTTG
323 GTAAATAAGTTTTTC
* **
10367786 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10367847 GACAAGTTCG
Statistics
Matches: 660, Mismatches: 65, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
335 27 0.04
336 79 0.12
337 39 0.06
338 303 0.46
339 10 0.02
340 198 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (337 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCGAGCAT
GGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATA
AAAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTA
AATAAGTTTTTC
Found at i:10367755 original size:62 final size:62
Alignment explanation
Indices: 10367658--10367905 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10367648 ATTATAAAAG
* *
10367658 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10367720 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10367782 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10367844 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10367906 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10367854 original size:402 final size:401
Alignment explanation
Indices: 10367352--10368123 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10367342 CCCAGAACTA
* * * *
10367352 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10367417 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10367482 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10367546 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10367610 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10367675 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10367740 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10367754 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10367819 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10367884 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10367949 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10368014 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10368079 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10368124 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10368360 original size:62 final size:62
Alignment explanation
Indices: 10368271--10368459 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 62
10368261 CCTGTAAAAG
* * *
10368271 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10368333 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * *
10368395 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
10368457 TTT
1 TTT
10368460 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
61 3 0.03
62 103 0.95
63 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10368700 original size:60 final size:61
Alignment explanation
Indices: 10368611--10368794 Score: 217
Period size: 62 Copynumber: 3.0 Consensus size: 61
10368601 ATCGTAAAAG
* * * * * *
10368611 TTTGAGAAGTTCGGATGTTCATCCCAGAACTA-AGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10368671 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACTA-GAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10368733 TTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-CTAGAGAGAAACAATTCTCACGTAAATAAGTT
10368795 ATTAATTCAA
Statistics
Matches: 106, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
60 27 0.25
62 77 0.73
63 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACTAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10368708 original size:338 final size:337
Alignment explanation
Indices: 10368064--10369137 Score: 1534
Period size: 338 Copynumber: 3.2 Consensus size: 337
10368054 TGAAAGTTTG
* * * *
10368064 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
10368128 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCGAGCA
* * * * * *
10368192 TGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT--T-ATGAATACTTTTTGGAACTGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
* *
10368254 AAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAGAATC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
10368319 TACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAAC
259 TACGTAAATAAGTTTTTGACAAGTTGT-AAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10368384 GAAAATAAGTTTTTC
323 GTAAATAAGTTTTTC
* *
10368399 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
10368464 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC-GAGCA
* * * *
10368529 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAA-TATA
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGT-TA
* * * * *
10368593 AAAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAA-CTA-AGAGAAACAATTC
194 TAAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
10368656 TTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCA
258 TTACGTAAATAAGTTTTTGACAAGTT-GTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCA
10368721 CGTAAATAAGTTTTTC
322 CGTAAATAAGTTTTTC
* * *
10368737 ACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAATAAGTTATTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10368802 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTT-CCGAGCA
*
10368867 TGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
130 TGGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTAT
** *
10368932 AAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 AAAAG-AATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
10368997 TACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCAC
259 TACGTAAATAAGTTTTTGACAAG-TTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCAC
*
10369062 GTAAATAAGTTTTTG
323 GTAAATAAGTTTTTC
* **
10369077 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
10369138 GACAAGTTCG
Statistics
Matches: 660, Mismatches: 65, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
335 27 0.04
336 79 0.12
337 39 0.06
338 303 0.46
339 10 0.02
340 198 0.30
341 4 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (337 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCGAGCAT
GGAATGTTTGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACAGAAGTTATA
AAAGAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTGTAAGTTCGTCCAAGAACAAGGAGAGAAACAATACTCACGTA
AATAAGTTTTTC
Found at i:10369046 original size:62 final size:62
Alignment explanation
Indices: 10368949--10369196 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10368939 ATTATAAAAG
* *
10368949 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10369011 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10369073 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10369135 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10369197 ATTAATTAAC
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10369145 original size:402 final size:401
Alignment explanation
Indices: 10368643--10369414 Score: 1071
Period size: 402 Copynumber: 1.9 Consensus size: 401
10368633 CCCAGAACTA
* * * *
10368643 AGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
*
10368708 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* *
10368773 CCAATTCTCACATAAATAAGTTATTAATTCAA-GGACCAAAACTTGTTTACAAAAAGACAAACTA
131 ACAATTCTCACATAAATAAGTTATTAATT-AACAGACCAAAACTTGTTTACAAAAAGACAAACTA
* * *
10368837 TTTAGACCAAATTATGTGATTTCCCGAGCATGGAATGTTTGAAAAATT-ACTAGAAAGAGTGGAT
195 TTTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTA-AAAGAATGGAT
** * * *
10368901 CATCTTGAATACTTTCTGGAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATG
259 CATCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAG
* * *
10368966 TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
324 TTCATACAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTT
10369031 GTCCAAGAACAAAG
388 GTCCAAGAACAAAG
*
10369045 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGA
1 AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
* * * * * *
10369110 GAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAA
66 GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
* * * * *
10369175 ACAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTAT
131 ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
* ** * * * * ** ** *
10369240 TTTCACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCT
196 TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
** * * *
10369305 TCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTT
261 TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
*
10369370 CATACAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTT
10369415 AATTTAAAGA
Statistics
Matches: 320, Mismatches: 48, Indels: 5
0.86 0.13 0.01
Matches are distributed among these distances:
401 30 0.09
402 288 0.90
403 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (401 bp):
AGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGA
GAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAGAA
ACAATTCTCACATAAATAAGTTATTAATTAACAGACCAAAACTTGTTTACAAAAAGACAAACTAT
TTACACCAAATGATGTGATTTCCCGAGCATGGAATGTTTGAAAAATTGACTAAAAGAATGGATCA
TCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGAAAGTT
CATACAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTC
CAAGAACAAAG
Found at i:10369651 original size:62 final size:62
Alignment explanation
Indices: 10369562--10369750 Score: 231
Period size: 62 Copynumber: 3.0 Consensus size: 62
10369552 CCTGTAAAAG
* * *
10369562 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10369624 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * *
10369686 TTTCACAAG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTAACGTAAATAAGTT
10369748 TTT
1 TTT
10369751 AATTCAAGGA
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 6 0.06
62 100 0.93
63 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10369696 original size:953 final size:954
Alignment explanation
Indices: 10368399--10370274 Score: 2976
Period size: 953 Copynumber: 2.0 Consensus size: 954
10368389 TAAGTTTTTC
* *
10368399 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
* *
10368464 CAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCA
66 CAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCA
* *
10368529 TGGAATGTTCGAAAAATTGCTAGAAACAATGGATCATCTTGAATACTTTCTGGAACCGAATATAA
131 TGGAATGTTCGAAAAATTGCCAGAAACAATGGAT-ATCATGAATACTTTCTGGAACCGAATATAA
* * * * *
10368594 AAAAGTGATCGTAAAAGTTTGAGAAGTTCGGATGTTCATCCCAGAACTAAGAGAAACAATTCTTA
195 AAAAGTAACCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTA
* * * *
10368659 CGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGT
260 CGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGA
* *
10368724 AAATAAGTTTTTCACAAGTTTGAAAGTTCGTCCAAGAACCAACAGAGAACCAATTCTCACATAAA
325 AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCACATAAA
*
10368789 TAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGT
390 TAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGC
* *
10368854 GATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGAAAGAGTGGATCATCTTGAATACTTTCTG
455 GATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTG
*
10368919 GAACAGAAGTTATAAAAGAAATTATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA
520 GAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGA
* *
10368984 GAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAG
585 GAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAG
*
10369049 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAA
650 AAACAATTCTCACGTAAATAAG-TTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAA
** * ** **
10369114 CAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAA
714 CAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAA
* *
10369179 TTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTC
779 TTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTC
* * * * * *
10369244 ACCAAATGATGTGATTTTTCGAGGATTGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTT
844 AACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCTTCTT
*
10369309 GAATACTTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
909 GAATACCTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
* * * *
10369355 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
* * *
10369419 TAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGGGATTTTC-GAGC
66 CAAAGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATGATGCGATTTCCTGAGC
* * ** * *
10369482 ATGGAATGTTTGAAAAATTTCCAGAAGGAATGGAT-T-ATGAATACTTTTTGGAACTGAAGT-TA
130 ATGGAATGTTCGAAAAATTGCCAGAAACAATGGATATCATGAATACTTTCTGGAACCGAA-TATA
* *
10369544 TAAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATT
194 AAAAAGTAACC-GTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAA-CAA-AGAGAAACAATT
*
10369608 CTTACGTAAATAAGTTTTTGACAAGTT-TTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACT
256 CTTACGTAAATAAGTTTTTGACAAGTTCGT-AAGTTCGTACAAGAACCAGGAGAGAAACAATACT
*
10369672 AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCAC
320 AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCAC
* *
10369737 ATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAAT
385 ATAAATAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAAT
* *
10369802 TATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACT
450 TATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACT
* * * * * *
10369867 TTCTGGAACCGAATTTATAAAAGAAATCGTAAAAGTTTGAGAAGTTTGGATGTTCGTTCAAGAAC
515 TTCTGGAACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAC
*
10369932 CAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
580 CAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAA
*
10369997 GAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGA
645 GAGAGAAACAATTCTCACGTAAATAAGTTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGA
*
10370062 GAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAA
710 GAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAA
*
10370127 ACAATTCTCAGGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTAT
775 ACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTAT
*
10370192 TTTGAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCT
840 TTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCT
10370257 TCTTGAATACCTTAAGGA
905 TCTTGAATACCTTAAGGA
10370275 TCCAAATGAT
Statistics
Matches: 842, Mismatches: 72, Indels: 16
0.91 0.08 0.02
Matches are distributed among these distances:
950 2 0.00
951 59 0.07
952 235 0.28
953 401 0.48
954 39 0.05
955 79 0.09
956 27 0.03
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (954 bp):
ACAAGTTCGAAAGTTCATACAAGAACCAAGAGAAAAACAATTCTCACATAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCA
TGGAATGTTCGAAAAATTGCCAGAAACAATGGATATCATGAATACTTTCTGGAACCGAATATAAA
AAAGTAACCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAACAAAGAGAAACAATTCTTAC
GTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAA
AATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAACAGAAAACCAATTCTCACATAAAT
AAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCG
ATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAATGGATCATCTTGAATACTTTCTGG
AACAGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGA
AACAATTCTCACGTAAATAAGTTTTGACAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACA
ATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTCATCCAAGAACCAAGAGAGAAACAATT
CTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTCAA
CAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAATTTGATTAAAGGAATGGATCTTCTTGA
ATACCTTAAGGAACCTAAGTTATAAAAGAAATCGTGAAAGTTTG
Found at i:10369974 original size:62 final size:62
Alignment explanation
Indices: 10369902--10370148 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
10369892 ATCGTAAAAG
* * * * *
10369902 TTTGAGAAGTTTGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10369964 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10370025 TTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTG
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*** * * * *
10370087 TTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10370149 ATTAACTAAC
Statistics
Matches: 162, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
61 57 0.35
62 105 0.65
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10370007 original size:340 final size:335
Alignment explanation
Indices: 10369355--10370085 Score: 1049
Period size: 340 Copynumber: 2.2 Consensus size: 335
10369345 TGAAAGTTTG
* * * *
10369355 ACAAGTTTGAAAGTTCATACAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * *
10369419 TAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCAT
66 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCAT
* * * * *
10369484 GGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATGAATACTTTTTGGAACTGAAGTTATAAAA
131 GGAATGTTCGAAAAATTGCCAGAAAGAATGGATTATGAATACTTTCTGGAACCGAAGTTATAAAA
10369549 GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
196 GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
* * *
10369614 TAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAA
261 TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAAA
10369679 ATAAGTTTTTC
326 ATAAG-TTTTC
*
10369690 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACATAAATAAGTTTTTAAT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTCACATAAATAAGTTTTTAAT
* *
10369754 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
65 TCAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAG
* * *
10369818 CATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATTT
128 CATGGAATGTTCGAAAAATTGCCAGAAAGAATGGAT--T-ATGAATACTTTCTGGAACCGAAGTT
* * *
10369883 ATAAAAGAA-ATCGTAAAAGTTTGAGAAGTTTGGATGTTCGTT-CAAGAACCAAGAGAGAAACAA
190 ATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTC-TTCCAAGAACCAAGAGAGAAACAA
* * *
10369946 TTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
253 TTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATAC
* * *
10370011 TCACGTAAATAAGTTTTG
318 TAACGAAAATAAGTTTTC
* * *
10370029 ATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGT
1 ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGT
10370086 GTTTGACAAG
Statistics
Matches: 352, Mismatches: 34, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
335 29 0.08
336 77 0.22
337 40 0.11
339 55 0.16
340 149 0.42
341 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (335 bp):
ACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCAT
GGAATGTTCGAAAAATTGCCAGAAAGAATGGATTATGAATACTTTCTGGAACCGAAGTTATAAAA
GAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACG
TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAAA
ATAAGTTTTC
Found at i:10370122 original size:123 final size:123
Alignment explanation
Indices: 10369902--10370148 Score: 350
Period size: 123 Copynumber: 2.0 Consensus size: 123
10369892 ATCGTAAAAG
* * * * ** *
10369902 TTTGAGAAGTTTGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
*** *
10369967 GACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
*
10370025 TTTGATAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
1 TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
* * * *
10370090 GACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
10370148 T
1 T
10370149 ATTAACTAAC
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
123 108 1.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (123 bp):
TTTGAGAAGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTT
GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10370481 original size:62 final size:62
Alignment explanation
Indices: 10370382--10370566 Score: 271
Period size: 62 Copynumber: 3.0 Consensus size: 62
10370372 ATCGTAAAAG
* * * *
10370382 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10370444 TTTGACAAGTTCGTAAGTTCGTCCTAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10370506 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTCTCACATAAATAAGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGT
10370567 CATTAATTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 109 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10370665 original size:820 final size:819
Alignment explanation
Indices: 10369460--10371097 Score: 2721
Period size: 820 Copynumber: 2.0 Consensus size: 819
10369450 ACTATTTAGA
* *
10369460 CCAAATGATGGGATTTTCGAGCATGGAATGTTTGAAAAATTTCCAGAAGGAATGGATTATGAATA
1 CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTATGAACA
*
10369525 CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGA
66 CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
*
10369590 ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACC
131 ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTGTGAAGTTCGTACAAGAACC
10369655 AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
196 AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
** *
10369720 AGAAAACCAATTCTCACATAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACA
261 AGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACA
* *
10369785 AACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAAT
326 AACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAAT
*
10369850 GGATCATCTTGAATACTTTCTGGAACCGAA-TT-TATAAAAGAAATCGTAAAAGTTTGAGAAGTT
391 GGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGACAAGTT
* * * *
10369913 TGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGG
456 CGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTAG
* *
10369978 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTGATAAGTTTGGAAG
521 AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGGAAG
*
10370042 TTCGTCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
586 TTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
* *
10370107 ATCCAGGAACCAAGAGAGAAACAATTCTCAGGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
651 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
*
10370172 TTTACAAAATGACAAACTATTTTGAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
716 TTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
10370237 TTGATTAAAGGAATGGATCTTCTTGAATACCTT-AAGGAT
781 TTGATTAAAGGAATGGATCTTCTTGAATA-CTTGAAGGAT
*
10370276 CCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTG
1 CCAAATGATGGGA-TTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTA---TG
*
10370341 AACACTTTTTGGAACTGAAGTTATAAAAGAA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTC
62 AACACTTTTTGGAACTGAAGTTATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTCGTC
* *
10370405 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGT-AAGTTCGTCCT
126 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTT-GTGAAGTTCGTACA
* * *
10370469 AGAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGA
190 AGAACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGA
* * *
10370534 ACCAGGAGAGAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTAGAAA
255 ACCAAGAGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAA
*
10370599 AAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTACTAGA
320 AAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGA
*
10370664 AAGAGTGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGA
385 AAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGA
10370729 CAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
450 CAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAA
* *
10370794 GTTTAGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTT
515 GTTTAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTT
* ** * **
10370859 TGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGG
580 TGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAA
** * * * *
10370924 AAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTATTAATTAACAGTCTAA
645 AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAA
* *
10370989 AACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCGAGCATGGAATGTTT
710 AACTTGTTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTT
* *
10371054 GGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGA
775 GGAAATTTGATTAAAGGAATGGATCTTCTTGAATACTTGAAGGA
10371098 ACCTAAGTTA
Statistics
Matches: 762, Mismatches: 50, Indels: 13
0.92 0.06 0.02
Matches are distributed among these distances:
816 13 0.02
817 44 0.06
819 1 0.00
820 338 0.44
821 3 0.00
822 137 0.18
823 226 0.30
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (819 bp):
CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTTCCAGAAGGAATGGATTATGAACA
CTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTGTGAAGTTCGTACAAGAACC
AGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAG
AGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAAGACA
AACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTACTAGAAAGAAT
GGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAATCGTAAAAGTTTGACAAGTT
CGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTAG
AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGGAAG
TTCATCCAAAAACCAAGAGAGAAACAATTCTCACATAAATAAGTGTTTGACAAGTTCAAAAGTTC
ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAGTCCAAAACTTG
TTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGAAAT
TTGATTAAAGGAATGGATCTTCTTGAATACTTGAAGGAT
Found at i:10370796 original size:62 final size:62
Alignment explanation
Indices: 10370724--10370964 Score: 365
Period size: 62 Copynumber: 3.9 Consensus size: 62
10370714 ATCGTAAAAG
* *
10370724 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * * * *
10370786 TTTGACAAGTTTAGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10370848 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10370910 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10370965 CTATGTTATT
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 161 1.00
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10371342 original size:214 final size:215
Alignment explanation
Indices: 10370910--10371404 Score: 617
Period size: 214 Copynumber: 2.3 Consensus size: 215
10370900 TAAATAAGTT
** * * *
10370910 TTTGACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTATT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTTT
* * * *
10370975 AATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCG
65 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTCG
* * * ** *
10371040 AGCATGGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAG
130 AGCATGGAATGATTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAG
*
10371105 TTATAAAAGAAATCGTGAAAG
195 TTATAAAAGAAATCGTAAAAG
* * *
10371126 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAGGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTT
*
10371190 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
65 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
***
10371253 GAGCATGGAATGATTGAAAAATTG-CCAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAA-CT
129 GAGCATGGAATGATTGAAAAATTGTCCA-AAGGAATGGATCT-TCTTGAATACTTGAAGGAACCT
*
10371315 GAAGTTATAAAAG-AACCTGTAAAAG
192 -AAGTTATAAAAGAAATC-GTAAAAG
* * * *
10371340 TTTGACAAGTTCGGATGTTCTTCGAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
10371405 GACAAGTTTT
Statistics
Matches: 241, Mismatches: 30, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
213 7 0.03
214 99 0.41
215 99 0.41
216 36 0.15
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTA
ATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTCGA
GCATGGAATGATTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10371387 original size:215 final size:216
Alignment explanation
Indices: 10370910--10371404 Score: 628
Period size: 215 Copynumber: 2.3 Consensus size: 216
10370900 TAAATAAGTT
* * * *
10370910 TTTGACAAGTTCGGAAGTT-TGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTAT
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10370974 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTC
65 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
* * * ** *
10371039 GAGCATGGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAA
130 GAGCATGGAATGATTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTGAAGGAACCTAA
*
10371104 GTTATAAAAGAAATCGTGAAAG
195 GTTATAAAAGAAATCGTAAAAG
* * * * *
10371126 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAGGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10371190 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTC
***
10371253 GAGCATGGAATGATTGAAAAATTG-CCAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAA-CT
130 GAGCATGGAATGATTGAAAAATTGTCCA-AAGGAATGGATCT-TCTTGAATACTTGAAGGAACCT
*
10371315 GAAGTTATAAAAG-AACCTGTAAAAG
193 -AAGTTATAAAAGAAATC-GTAAAAG
* * *
10371340 TTTGACAAGTTCGGATGTTCTTCGAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10371405 GACAAGTTTT
Statistics
Matches: 240, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
213 7 0.03
214 99 0.41
215 100 0.42
216 34 0.14
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (216 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATGGGATTTTTCG
AGCATGGAATGATTGAAAAATTGTCCAAAGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10371528 original size:62 final size:61
Alignment explanation
Indices: 10371344--10371521 Score: 214
Period size: 62 Copynumber: 2.9 Consensus size: 61
10371334 TAAAAGTTTG
* * * * *
10371344 ACAAGTTCGGATGTTCTTCGAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTG
1 ACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTC
* * * * *
10371406 ACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTC
1 ACAAG-TTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTC
*
10371468 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACGTAAATA
1 ACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTAACGTAAATA
10371522 TTTTTTTAAT
Statistics
Matches: 97, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
61 6 0.06
62 89 0.92
63 2 0.02
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (61 bp):
ACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTTTTTC
Found at i:10371777 original size:62 final size:61
Alignment explanation
Indices: 10371680--10371864 Score: 228
Period size: 61 Copynumber: 3.0 Consensus size: 61
10371670 ATCGTAAAAG
* * * * *
10371680 TTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10371742 TTTGACAAGTTTGGAGGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAG-T
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10371803 TTTGATAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
10371865 ATTAATTAAC
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
61 53 0.50
62 53 0.50
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10372009 original size:339 final size:336
Alignment explanation
Indices: 10371130--10372082 Score: 1195
Period size: 339 Copynumber: 2.8 Consensus size: 336
10371120 TGAAAGTTTG
* * *
10371130 ACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATA-CAATTCTCACGTAAATAGGTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACCAATTCTCACGTAAATAAGTTTTTAA-
*
10371193 TTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCA
64 TTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCA
* * *
10371258 TGGAATGATTGAAAAATTGCCAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAACTGAAGTTA
129 TGGAATGTTTGAAAAATTGCTAGAAGGAATGGATCT-TCTTGAATACTTTATGGAACT-AAGTTA
*
10371322 TAAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCGAAGAACCAAGAGAGAAACAATT
192 TAAAAGAAATC-GTAAAAGTTTGACAAGTTCGGATGTTCTTC-AAGAACCAAGAGAGAAACAATT
* * *
10371386 CTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTA
255 CTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTA
10371451 ACGAAAATAAGTTTTTC
320 ACGAAAATAAGTTTTTC
* **
10371468 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCACGTAAATATTTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * *
10371533 CAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAGC
66 -AAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-GAGC
* * * * * * *
10371597 TTGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATTTA
128 ATGGAATGTTTGAAAAATTGCTAGAAGGAATGGATCTTCTTGAATACTTTATGGAA-CTAAGTTA
*
10371662 TAAAAGAAATCGTAAAAGTTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTC
192 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTC-TTCAAGAACCAAGAGAGAAACAATTC
* * * * *
10371727 TTATGTAAATAAGTTTTTGACAAGTTTGGAGGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCA
256 TTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAA
*
10371792 C-ATAAATAAG-TTTTG
321 CGA-AAATAAGTTTTTC
* * * * * *
10371807 ATAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACTAAGTTATTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * ** **
10371872 AACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTCGAGCA
66 AA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTTCGAGCA
* * * * *
10371937 TGGAATGTTTGGAAATTTGTTTA-AGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAAGTTA
129 TGGAATGTTTGAAAAATTG-CTAGAAGGAATGGATCTTCTTGAATACTTTATGGAA-CTAAGTTA
* * * * * *
10372001 TAAAAGAAATCGTGAAAGTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTC
192 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTC-TTCAAGAACCAAGAGAGAAACAATTC
*
10372065 TCACGTAAATAAGTTTTT
256 TTACGTAAATAAGTTTTT
10372083 AATTTAAAGA
Statistics
Matches: 531, Mismatches: 70, Indels: 28
0.84 0.11 0.04
Matches are distributed among these distances:
338 65 0.12
339 271 0.51
340 188 0.35
341 7 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (336 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATG
GAATGTTTGAAAAATTGCTAGAAGGAATGGATCTTCTTGAATACTTTATGGAACTAAGTTATAAA
AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCTTCAAGAACCAAGAGAGAAACAATTCTTACG
TAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGAAA
ATAAGTTTTTC
Found at i:10372098 original size:554 final size:554
Alignment explanation
Indices: 10371468--10372637 Score: 1550
Period size: 554 Copynumber: 2.1 Consensus size: 554
10371458 TAAGTTTTTC
**
10371468 ACAAGTTCGAAAGTTCGTCCAAGAACCAA-GAGAAAACCAATTCTCACGTAAATATTTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAG-AAA-CAATTCTCACGTAAATAAGTTTTTAAT
* *
10371532 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
64 TCAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAG
* * *
10371596 CTTGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATTT
127 CATGGAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTT
* *
10371661 ATAAAAGAA-ATCGTAAAAGTTTGAGAAGTTCGGATGTTCGTT-CAAGAACCAAGAGAGAAACAA
192 ATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTC-TTCCAAGAACCAAGAGAGAAACAA
* * * *
10371724 TTCTTATGTAAATAAGTTTTTGACAAGTTTGGAGGTTCGTCCAAGAACAAAGAGAGAAACAATTC
255 TTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATAC
* * * * * * *
10371789 TCAC-ATAAATAAG-TTTTGATAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTC
320 TAACGA-AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTC
* * * *
10371852 ACGTAACTAAGTTATTAATT-AACAGTCTAAAACTTGTTTA-CAAAATGACAAACTATTTTCACC
384 ACGTAAATAAGTTATTAATTCAA-AGACCAAAACTTGTTTACCAAAA-GACAAACTATTTACACC
* * * * * * ** *
10371915 AAATGATATGATTT-TTCGAGCATGGAATGTTTGGAAATTTGTTTA-AGGGAATGGATCTTCTTG
447 AAATGATACGATTTCCT-GAGCATGGAATGTTCGAAAAATTG-CTAGAAAGAATGGATCATCTTG
* * * *
10371978 AATACTTTAAGGAATCTAAGTTATAAAAGAAATCGTGAAAGTTTG
510 AATACTTTAAGGAACCGAAGTTATAAAAGAAACCGTAAAAGTTTG
* * * *
10372023 ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
10372088 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCATG
66 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
* * * * *
10372153 GAATGTTTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGTTATAA
131 GAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAA
10372218 AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
196 AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
* * *
10372283 CGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGA
261 CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGA
*
10372348 AAATAAGTTTTTCACATGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCACGTAAA
326 AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCACGTAAA
** * * * * *
10372413 TATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAATTATGC
391 TAAGTTATTAATTCAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTACACCAAATGATAC
**
10372478 GATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTG
456 GATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTAAG
*
10372543 GAACCGAATTTATAAAAGAAACCGTAAAAGTTTG
521 GAACCGAAGTTATAAAAGAAACCGTAAAAGTTTG
* * * * * *
10372577 AGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGAAACAATTCTCACGTAAATAAGTTTTT
10372638 GACAAGTTTG
Statistics
Matches: 533, Mismatches: 71, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
552 2 0.00
553 191 0.36
554 273 0.51
555 64 0.12
556 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (554 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
GAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAA
AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGA
AAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCACGTAAA
TAAGTTATTAATTCAAAGACCAAAACTTGTTTACCAAAAGACAAACTATTTACACCAAATGATAC
GATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTAAG
GAACCGAAGTTATAAAAGAAACCGTAAAAGTTTG
Found at i:10372296 original size:215 final size:215
Alignment explanation
Indices: 10371803--10372297 Score: 646
Period size: 214 Copynumber: 2.3 Consensus size: 215
10371793 ATAAATAAGT
* * * * *
10371803 TTTGATAAGTTCGGAAGTT-TGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACTAAGTTAT
1 TTTGACAAGTTCGGAAGTTCT-TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
10371867 TAATTAACAGTCTAAAACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTC
65 TAATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATAGGATTTTTC
* * *
10371932 GAGCATGGAATGTTTGGAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAA
130 GAGCATGGAATGTTTGAAAAATTG-TCAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAA
*
10371997 GTTATAAAAGAAATCGTGAAAG
194 GTTATAAAAGAAATCGTAAAAG
* * * *
10372019 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10372083 AATTTAA-AGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
66 AA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATAGGATTTTTC
**
10372146 GAGCATGGAATGTTTGAAAAATTG-CAAGAAGGAATGGAT-TATCTTGAATACTTTTTGGAA-CT
130 GAGCATGGAATGTTTGAAAAATTGTCAAG--GGAATGGATCT-TCTTGAATACTTTAAGGAATCT
*
10372208 GAAGTTATAAAAG-AACCTGTAAAAG
192 -AAGTTATAAAAGAAATC-GTAAAAG
* *
10372233 TTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10372298 GACAAGTTTT
Statistics
Matches: 243, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
212 3 0.01
213 6 0.02
214 101 0.42
215 101 0.42
216 32 0.13
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (215 bp):
TTTGACAAGTTCGGAAGTTCTTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTTACACCAAATGATAGGATTTTTCG
AGCATGGAATGTTTGAAAAATTGTCAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAAGT
TATAAAAGAAATCGTAAAAG
Found at i:10372322 original size:62 final size:62
Alignment explanation
Indices: 10372233--10372414 Score: 217
Period size: 62 Copynumber: 2.9 Consensus size: 62
10372223 CCTGTAAAAG
* * *
10372233 TTTGACAAG-TTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * * * *
10372295 TTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGAAAATAAGTT
1 TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
* * *
10372357 TTTCACATG-TTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATTCTCACGTAAATA
1 TTTGACAAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTAACGTAAATA
10372415 TTTTTTTAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
61 6 0.06
62 93 0.92
63 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTAACGTAAATAAGTT
Found at i:10372643 original size:893 final size:893
Alignment explanation
Indices: 10370799--10372757 Score: 3639
Period size: 893 Copynumber: 2.2 Consensus size: 893
10370789 GACAAGTTTA
* * * * * *
10370799 GATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGGAA
1 GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAA
* * * *
10370864 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGACAAGTTCGGAAGTT
66 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTGATAAGTTCGGAAGTT
*
10370929 TGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTATGTTATTAATTAACAGTCTAAAACTT
130 TGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTT
*
10370994 GTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGGAAA
195 GTTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTCGAGCATGGAATGTTTGGAAA
10371059 TTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGTTATAAAAGAAATCGTGAA
260 TTTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGTTATAAAAGAAATCGTGAA
*
10371124 AGTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAGGTTTT
325 AGTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTT
10371189 TAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCG
390 TAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCG
*
10371254 AGCATGGAATGATTGAAAAATTGCCAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAG
455 AGCATGGAATGATTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAG
*
10371319 TTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCGAAGAACCAAGAGAGAAACAA
520 TTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAA
10371384 TTCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATAC
585 TTCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATAC
10371449 TAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCA
650 TAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCA
10371514 CGTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAA
715 CGTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAA
*
10371579 TTATGCGATTTCCTGAGCTTGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATAC
780 TTATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATAC
*
10371644 TTTCTGGAACCGAATTTATAAAAGAAATCGTAAAAGTTTGAGAAGTTCG
845 TTTCTGGAACCGAATTTATAAAAGAAACCGTAAAAGTTTGAGAAGTTCG
*
10371693 GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAG
1 GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAA
*
10371758 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTGATAAGTTCGGAAGTTT
66 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTCGGAAGTTT
*
10371823 GTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTG
131 GTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTG
10371888 TTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTCGAGCATGGAATGTTTGGAAAT
196 TTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTCGAGCATGGAATGTTTGGAAAT
* *
10371953 TTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAAGTTATAAAAGAAATCGTGAAA
261 TTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGTTATAAAAGAAATCGTGAAA
10372018 GTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
326 GTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
10372083 AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGA
391 AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGA
*
10372148 GCATGGAATGTTTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGT
456 GCATGGAATGATTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGT
10372213 TATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAAT
521 TATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAAT
10372278 TCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACT
586 TCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACT
*
10372343 AACGAAAATAAGTTTTTCACATGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCAC
651 AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCAC
10372408 GTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAAT
716 GTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAAT
10372473 TATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACT
781 TATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACT
10372538 TTCTGGAACCGAATTTATAAAAGAAACCGTAAAAGTTTGAGAAGTTCG
846 TTCTGGAACCGAATTTATAAAAGAAACCGTAAAAGTTTGAGAAGTTCG
10372586 GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAA
1 GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAA
* *
10372651 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTTGGAAGTTC
66 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTCGGAAGTTT
* * * *
10372716 ATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTT
131 GTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTAAGTT
10372758 TTTGACAAGT
Statistics
Matches: 1032, Mismatches: 33, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
893 934 0.91
894 98 0.09
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (893 bp):
GATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGTTTGGAA
GTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGATAAGTTCGGAAGTTT
GTCCAAGAACCAAGAGAGAACCAATTCTCACGTAACTAAGTTATTAATTAACAGTCTAAAACTTG
TTTACAAAATGACAAACTATTTTCACCAAATGATATGATTTTTCGAGCATGGAATGTTTGGAAAT
TTGTTTAAGGGAATGGATCTTCTTGAATACTTGAAGGAACCTAAGTTATAAAAGAAATCGTGAAA
GTTTGACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTT
AATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGA
GCATGGAATGATTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGT
TATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAAT
TCTTACGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACT
AACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATTCTCAC
GTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAAGACAAACTATTTAGACCAAAT
TATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACT
TTCTGGAACCGAATTTATAAAAGAAACCGTAAAAGTTTGAGAAGTTCG
Found at i:10372678 original size:340 final size:337
Alignment explanation
Indices: 10372023--10372760 Score: 1097
Period size: 340 Copynumber: 2.2 Consensus size: 337
10372013 TGAAAGTTTG
* * *
10372023 ACAAGTTTGAAAGTTCATCCAAGAACCAAGGAGATACAATTCTCACGTAAATAAGTTTTTAATTT
1 ACAAGTTCGAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
10372088 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAGCATG
66 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
* * * * *
10372153 GAATGTTTGAAAAATTGCAAGAAGGAATGGATTATCTTGAATACTTTTTGGAACTGAAGTTATAA
131 GAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAA
10372218 AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
196 AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
* * *
10372283 CGTAAATAAGTTTTTGACAAGTTTTGAAGTTCGTACAAGAACCAGGAGAGAAACAATACTAACGA
261 CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGA
10372348 AAATAAGTTTTTC
326 AAATAAG-TTTTC
* * **
10372361 ACATGTTCGAAAGTTCGTCCAAGAACCAA-GAGAAAACCAATTCTCACGTAAATATTTTTTTAAT
1 ACAAGTTCGAAAGTTCATCCAAGAACCAAGGAG-AAA-CAATTCTCACGTAAATAAGTTTTTAAT
* *
10372425 TCAAGGACCAAAACTTGTTTACCAAAA-GACAAACTATTTAGACCAAATTATGCGATTTCCTGAG
64 TCAAAGACCAAAACTTGTTTA-CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-GAG
* *
10372489 CATGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAATTT
127 CATGGAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTT
*
10372554 ATAAAAGAAACC-GTAAAAGTTTGAGAAGTTCGGATGTTCGTT-CAAGAACCAAGAGAGAAACAA
192 ATAAAAG-AACCTGTAAAAGTTTGACAAGTTCGGATGTTC-TTCCAAGAACCAAGAGAGAAACAA
* * *
10372617 TTCTTATGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTC
255 TTCTTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATAC
* * *
10372682 TCACGTAAATAAGTTTTG
320 TAACGAAAATAAGTTTTC
* * *
10372700 ATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCATCCAAGAACCAA-GGAGAAACAATTCTCACGTAAATAAGTTTTT
10372761 GACAAGTTCA
Statistics
Matches: 357, Mismatches: 35, Indels: 15
0.88 0.09 0.04
Matches are distributed among these distances:
337 3 0.01
338 28 0.08
339 124 0.35
340 193 0.54
341 9 0.03
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (337 bp):
ACAAGTTCGAAAGTTCATCCAAGAACCAAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
GAATGTTCGAAAAATTGCAAGAAAGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATAA
AAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTACAAGAACAAAGAGAGAAACAATACTAACGA
AAATAAGTTTTC
Found at i:10372697 original size:51 final size:53
Alignment explanation
Indices: 10372641--10372758 Score: 123
Period size: 61 Copynumber: 2.1 Consensus size: 53
10372631 AGTTTTTGAC
*
10372641 AAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGAT
1 AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACG---ATAA----T-AT
* *
10372702 AAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACG-TAA-AT
1 AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGATAATAT
10372753 AAGTTT
1 AAGTTT
10372759 TTGACAAGTT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
51 8 0.15
57 3 0.06
61 43 0.80
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.25
Consensus pattern (53 bp):
AAGTTTGGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGATAATAT
Found at i:10372735 original size:61 final size:62
Alignment explanation
Indices: 10372573--10372819 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10372563 ACCGTAAAAG
* * * * * *
10372573 TTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10372635 TTTGACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10372696 TTTGATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** * *
10372758 TTTGACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10372820 ATTAACTAAC
Statistics
Matches: 166, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
61 57 0.34
62 109 0.66
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10372793 original size:123 final size:123
Alignment explanation
Indices: 10372573--10372819 Score: 359
Period size: 123 Copynumber: 2.0 Consensus size: 123
10372563 ACCGTAAAAG
* * * * *
10372573 TTTGAGAAGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*** *
10372638 GACAAGTTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
10372696 TTTGATAAGTTTGGAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10372761 GACAAGTTCAAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
66 GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
10372819 T
1 T
10372820 ATTAACTAAC
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
123 109 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (123 bp):
TTTGAGAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAAAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10373067 original size:820 final size:822
Alignment explanation
Indices: 10372128--10373768 Score: 2707
Period size: 820 Copynumber: 2.0 Consensus size: 822
10372118 ACTATTTAGA
*
10372128 CCAAATGATGGGATTTTCGAGCATGGAATGTTTGAAAAATTGCAAGAAGGAATGGATTATCTTGA
1 CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTGCAAGAAGGAATGGATTATCTTGA
* *
10372193 ATACTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCTTCCA
66 ACACTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
*
10372258 AGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTT-TTGAAGTTCGTACAAG
131 AGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGT-AAGTTCGTACAAG
*
10372322 AACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACATGTTCGAAAGTTCGTCCAAGAAC
195 AACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAAC
* ** ** *
10372387 CAAGAGAAAACCAATTCTCACGTAAATATTTTTTTAATTCAAGGACCAAAACTTGTTTACCAAAA
260 CAAGAGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAA
* * *
10372452 GACAAACTATTTAGACCAAATTATGCGATTTCCTGAGCATGGAATGTTCGAAAAATTGCTAGAAA
325 GACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATATTCGAAAAATTACTAGAAA
*
10372517 GAATGGATCATCTTGAATACTTTCTGGAACCGAA-TT-TATAAAAGAAACCGTAAAAGTTTGAGA
390 GAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAACCGTAAAAGTTTGACA
* *
10372580 AGTTCGGATGTTCGTTCAAGAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTTGACAAGT
455 AGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGT
* *
10372645 TTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTGATAAGTTTG
520 TTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTG
* *
10372709 GAAGTTCATCCAAGAACCAAGGGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCAAAA
585 GAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAAAAGTTCAAAA
* *
10372774 GTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAACTAACAATCCAAAA
650 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACAAAGTTATTAACTAACAATCCAAAA
*
10372839 CTTGTTTACAAAATGACAAACTATTTTGAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGG
715 CTTGTTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGG
10372904 AAATTTGATTAAAGGAATGGATCTTCTTGAATACCTTAAGGAT
780 AAATTTGATTAAAGGAATGGATCTTCTTGAATACCTTAAGGAT
* *
10372947 CCAAATGATGGGATTTTTCGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTG
1 CCAAATGATGGGA-TTTTCGAGCATGGAATGTTCGAAAAATTGCAAGAAGGAATGGATTATCTTG
*
10373012 AACACTTTTTGGAACTGAAGTTATAAAAGAA-ATCGTAAAAGTTTGACAAGTTCGGATGTTCGTC
65 AACACTTTTTGGAACTGAAGTTATAAAAGAACCT-GTAAAAGTTTGACAAGTTCGGATGTTCGTC
*
10373076 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTCCAA
129 CAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAA
* * *
10373141 GAACTAGGAGAGAAACAATACTCACGTAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAA
194 GAACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAA
* * *
10373206 CCAGGAGAGAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTAGAAAA
259 CCAAGAGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAA
*
10373271 AGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATATTTGAAAAATTACTAGAA
324 AGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATATTCGAAAAATTACTAGAA
** * *
10373336 AGTGTGGATCATCTTGAATACTTTCTGGAACTGAAGTTATATAAAAGAAATCGTAAAAGTTTGAC
389 AGAATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAACCGTAAAAGTTTGAC
*
10373401 AAGTTCGGATGTTCGTCCAAGAACCAAGATAGAAACAATTCTTACGTAAATAAGTTTTTGACAAG
454 AAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAG
* *
10373466 TTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTT
519 TTTGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTT
* **
10373531 GGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTGAAAAGTTCGGA
584 GGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAAAAGTTCAAA
** * * * * *
10373596 AGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAACAAAGTTATTAATTAACAGTCTAAA
649 AGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACAAAGTTATTAACTAACAATCCAAA
* *
10373661 ACTTGTTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCGAGCATGGAATGTTTG
714 ACTTGTTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTG
* * *
10373726 GAAATTTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGA
779 GAAATTTGATTAAAGGAATGGATCTTCTTGAATACCTTAAGGA
10373769 ATCTAAGTTA
Statistics
Matches: 759, Mismatches: 57, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
819 14 0.02
820 378 0.50
821 3 0.00
822 134 0.18
823 230 0.30
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (822 bp):
CCAAATGATGGGATTTTCGAGCATGGAATGTTCGAAAAATTGCAAGAAGGAATGGATTATCTTGA
ACACTTTTTGGAACTGAAGTTATAAAAGAACCTGTAAAAGTTTGACAAGTTCGGATGTTCGTCCA
AGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGTAAGTTCGTACAAGA
ACCAGGAGAGAAACAATACTAACGAAAATAAGTTTTTCACAAGTTCGAAAGTTCGTCCAAGAACC
AAGAGAAAACCAATTCTCACATAAATAAGTCATTAATTCAAGGACCAAAACTTGTTTACAAAAAG
ACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATATTCGAAAAATTACTAGAAAG
AATGGATCATCTTGAATACTTTCTGGAACCGAAGTTATATAAAAGAAACCGTAAAAGTTTGACAA
GTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTT
TGGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTTTTTGACAAGTTTGG
AAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAAAAGTTCAAAAG
TTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACAAAGTTATTAACTAACAATCCAAAAC
TTGTTTACAAAATGACAAACTATTTTCAACAAATGATGTGATTTCTCGAGCATGGAATGTTTGGA
AATTTGATTAAAGGAATGGATCTTCTTGAATACCTTAAGGAT
Found at i:10373152 original size:62 final size:62
Alignment explanation
Indices: 10373053--10373237 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 62
10373043 ATCGTAAAAG
* * * *
10373053 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10373115 TTTGACAAGTTCGTAAGTTCGTCCAAGAACTAGGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10373177 TTTCACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAACCAATTCTCACATAAATAAGT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGT
10373238 CATTAATTCA
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10373642 original size:62 final size:62
Alignment explanation
Indices: 10373395--10373635 Score: 347
Period size: 62 Copynumber: 3.9 Consensus size: 62
10373385 ATCGTAAAAG
* * *
10373395 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGATAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10373457 TTTGACAAGTTTGGATGTTTGTCCAAGAACAAAGAGAGAAACAATTCTCACGGAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10373519 TTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10373581 TTTGAAAAGTTCGGAAGTTTGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
10373636 CAAAGTTATT
Statistics
Matches: 160, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 160 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10373994 original size:215 final size:215
Alignment explanation
Indices: 10373602--10374076 Score: 582
Period size: 215 Copynumber: 2.2 Consensus size: 215
10373592 CGGAAGTTTG
* * * *
10373602 TCCAAGAATCAAGAGAGAACCAATTCTCACGTAACA-AAGTTATTAATTAACAGTCTAAAACTTG
1 TCCAAGAACCAAGAGAGAA-CAATTCTCACGTAA-ATAAGTTTTTAATTAACAGACCAAAACTTG
* * * ** * * *
10373666 TTTACAAAATGACAAACTATTTTCACCAAATGATGTGATTTTTCGAGCATGGAATGTTTGGAAAT
64 TTTACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
* ** * * * *
10373731 TTGTTTAAGGGAATGGATCTTCTTGAATACTTTAAGGAATCTAAGTTATAAAAGAAATCTTGAAA
129 TTGTCTAAAAGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAA
* *
10373796 GTTTGACAAGTTTGAAAGTTCA
194 GTTTGACAAATTGGAAAGTTCA
10373818 TCCAAGAACCAAG-GAGATACAATTCTCACGTAAATAAGTTTTTAATTTAA-AGACCAAAACTTG
1 TCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAA-TTAACAGACCAAAACTTG
* *
10373881 TTTACAAAATGACAAACTATTTAGACCAAATCATGCGATTTCCCGAGCTTGGAATGTTCGAAAAA
64 TTTACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCCGAGCATGGAATGTTCGAAAAA
**
10373946 TTG-CTAGAAAGAATGGAT-TATCTTGAATACTTTCTGGAACCGAAGTTATAAAAGAAATCGTAA
129 TTGTCTA-AAAGAATGGATCT-TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAA
* * *
10374009 AAGTTTGACAAATTGGGATGTTCG
192 AAGTTTGACAAATTGGAAAGTTCA
* *
10374033 TCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTT
10374077 GACAAGTTTC
Statistics
Matches: 222, Mismatches: 30, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
214 4 0.02
215 173 0.78
216 44 0.20
217 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (215 bp):
TCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTAACAGACCAAAACTTGTT
TACAAAATGACAAACTATTTACACCAAATCATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
GTCTAAAAGAATGGATCTTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCGTAAAAGT
TTGACAAATTGGAAAGTTCA
Found at i:10374109 original size:62 final size:62
Alignment explanation
Indices: 10374028--10374448 Score: 603
Period size: 62 Copynumber: 6.8 Consensus size: 62
10374018 AAATTGGGAT
* * *
10374028 GTTCGTCCAAGAACAAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTTCGAT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * *
10374090 GTTCATCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * *
10374152 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAACAAGTTTTTGACAAG-ATCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCG-AA
* * * *
10374214 GTTCATCCAAGAACCGAGAGAGAACCAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * * * *
10374276 GTTCGTCCTAGAACCAAGAGAGAAAGAATTGTTACGTAAATAAGTTTTTGACAAGTTTGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
* * * *
10374338 GTTCGTACAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTTTTCACAAG-TTCGAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCG-AA
*
10374400 GTTCGTCCAAGAACCAAGAGAGAATCAATTCTCACGTAAATAAGTTTTT
1 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10374449 AATTGAAGGA
Statistics
Matches: 319, Mismatches: 37, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
61 5 0.02
62 312 0.98
63 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (62 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTCGAA
Found at i:10374723 original size:62 final size:62
Alignment explanation
Indices: 10374624--10374750 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10374614 ATCGTAAAAG
* * * * *
10374624 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTACATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
* *
10374686 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAGGAGAGACACAACTCTCACGTAAATAAGTT
1 TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
10374748 TTT
1 TTT
10374751 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCTCACGTAAATAAGTT
Found at i:10374875 original size:49 final size:50
Alignment explanation
Indices: 10374820--10374917 Score: 130
Period size: 49 Copynumber: 2.0 Consensus size: 50
10374810 TTCCTGAGCA
10374820 TGGAATG-TTAGACAAATTGCTAGAAAG-AATGGAT-ATCTTGAATACTTTC
1 TGGAATGTTTAGA-AAATTGCTA-AAAGTAATGGATCATCTTGAATACTTTC
* * *
10374869 TGGAATGTTTGGAAATTTGCTAAAAGTAATGGATCGTCTTGAATACTTT
1 TGGAATGTTTAGAAAATTGCTAAAAGTAATGGATCATCTTGAATACTTT
10374918 AAGGAACCTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
48 4 0.09
49 22 0.51
50 17 0.40
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (50 bp):
TGGAATGTTTAGAAAATTGCTAAAAGTAATGGATCATCTTGAATACTTTC
Found at i:10375117 original size:60 final size:60
Alignment explanation
Indices: 10375022--10375243 Score: 232
Period size: 62 Copynumber: 3.6 Consensus size: 60
10375012 TTTAATTTAA
* * * * * *
10375022 AAGAGCCAAGAGAGAAACAATTGTAACGTATATAAGTTTTTGACAAATTCGGATGTTAGTCC
1 AAGAACCAAGAGAG-AA-AATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTAGTCC
* * *
10375084 AAGAACCAAGAGAGATAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCC
1 AAGAACCAAGAGAGAAAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTAGTCC
* * * *
10375144 AAGAACCAAGAGTA-AAACAGTACTCATGTAAATAAGTCTTTGACAAGTTCGAAAGTTCA-TCC
1 AAGAACCAAGAG-AGAAA-A-TTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTT-AGTCC
*
10375206 AAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 AAGAACCAAGAGAG-AA-AATTCTCACGTAAATAAGTT
10375244 ATTTAATTAA
Statistics
Matches: 133, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
60 51 0.38
61 4 0.03
62 74 0.56
63 3 0.02
64 1 0.01
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (60 bp):
AAGAACCAAGAGAGAAAATTCTCACGTAAATAAGTTTTTGACAAGTTCGGAAGTTAGTCC
Found at i:10375495 original size:215 final size:216
Alignment explanation
Indices: 10375186--10375678 Score: 631
Period size: 215 Copynumber: 2.3 Consensus size: 216
10375176 TAAGTCTTTG
* *
10375186 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTTAAT
** * *
10375251 TAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTG-A-TTTCTTGA
65 TAAGAGAACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATG-GCATTTTC-CGA
* * * *
10375314 GCATGGAATGTTT-AGAAATTTGCTCA-AAGGAATGGA-TCGTCTTGAATACTTTAAGGAACCTA
128 GAATGGAATGTTTGAAAAATTT-CT-AGAAGGAATGGATTC-TCTTGAATACTTTAAGGAAACGA
* * *
10375376 AGTTATAAAAGAACTCGTGAAAGTTTA
190 AGTTATAAAAGAAATCCTAAAAGTTTA
* * * *
10375403 ACAAGTTCGAAAGTTCGTCCGAGAACCTAG-GAGATACAATTCTCACGTAAATAACTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-T
* ***
10375467 TAA-AGAACAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATGGCATTTTCCGAGA
65 TAAGAGAACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGCATTTTCCGAGA
**
10375531 ATGGAATGTTTGAAAAATTTCTAGAAGGAATGGATTCTCTTGAATACTTTTTGGAAACGAAGTTA
130 ATGGAATGTTTGAAAAATTTCTAGAAGGAATGGATTCTCTTGAATACTTTAAGGAAACGAAGTTA
10375596 TAAAAGAAATCCTAAAAGTTTA
195 TAAAAGAAATCCTAAAAGTTTA
* * * *
10375618 ACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10375679 GACAAGTTCG
Statistics
Matches: 238, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
214 2 0.01
215 141 0.59
216 68 0.29
217 27 0.11
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
AAGAGAACAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGCATTTTCCGAGAA
TGGAATGTTTGAAAAATTTCTAGAAGGAATGGATTCTCTTGAATACTTTAAGGAAACGAAGTTAT
AAAAGAAATCCTAAAAGTTTA
Found at i:10375936 original size:278 final size:276
Alignment explanation
Indices: 10375403--10376572 Score: 1702
Period size: 278 Copynumber: 4.2 Consensus size: 276
10375393 TGAAAGTTTA
* * * *
10375403 ACAAGTTCGAAAGTTCGTCCGAGAACCTAG-GAGATA-CAATTCTCACGTAAATAACTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGA-ACCAATTCTCACGTAAATAAGTTTTTAAT
* * ** * * *
10375466 TTAAAGAACAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATGGCATTTTCCGAGA
65 TCAAAGACCAAAACTTG-TTTACAAAAGACAAACTATTTAGACCAAATGATGG-ATTTCCCGAGC
* * * * **
10375531 ATGGAATGTTTGAAAAATTTCTAGAAGGAATGGATTC-TCTTGAATACTTTTTGGAAACGAAGTT
128 ATGAAATGTTCGAAAAATTGCTAGAAAGAATGGA-TCATCTTGAATACTTTCAGGAAACGAAGTT
*
10375595 ATAAAAGAAATCCTAAAAGTTTAACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
192 ATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
10375660 CTTACGTAAATAAGTTTTTG
257 CTTACGTAAATAAGTTTTTG
10375680 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * *
10375745 CAAGGACCAAAACTTGTTTACAAGAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAAGACCAAAACTTGTTTACAA-AAGACAAACTATTTAGACCAAATGATG-GATTTCCCGAGCA
10375810 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTAT
129 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTAT
10375875 AAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
194 AAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10375940 TACGTAAATAAGTTTTTG
259 TACGTAAATAAGTTTTTG
10375958 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * *
10376023 CAAGGACCAAAACTTGTTTACAAGAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAAGACCAAAACTTGTTTACAA-AAGACAAACTATTTAGACCAAATGATG-GATTTCCCGAGCA
* *
10376088 TGAAATGTTCAAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
129 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTAT
* * * *
10376153 ATAAGAAATCATAAAAGTTTGACAAGTTT-GATGTTCATCCAAGAACTAAGAGAGAAACAATTCT
194 AAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10376217 TACGTAAATAAGTTTTTG
259 TACGTAAATAAGTTTTTG
*
10376235 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
10376300 GAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTTCCGAGCAT
66 CAAAGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGACCAAATGATGGATTTCCCGAGCAT
* * * * * * * ** *
10376365 GGAATGTTTGAAAATTTTCTAG-AAGTGATGGATTACCTTGAATACTTTTTGGAATCGAAGTTAT
130 GAAATGTTCGAAAAATTGCTAGAAAG-AATGGATCATCTTGAATACTTTCAGGAAACGAAGTTAT
* * * *
10376429 AAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTCT
194 AAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
10376494 CACGTAAATAAGTTTTTG
259 TACGTAAATAAGTTTTTG
* * * * * *
10376512 AGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10376573 GACAAGTTTG
Statistics
Matches: 823, Mismatches: 62, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
275 3 0.00
276 90 0.11
277 293 0.36
278 436 0.53
279 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.29
Consensus pattern (276 bp):
ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACAAAAGACAAACTATTTAGACCAAATGATGGATTTCCCGAGCATG
AAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTATAA
AAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTA
CGTAAATAAGTTTTTG
Found at i:10375962 original size:62 final size:62
Alignment explanation
Indices: 10375892--10376018 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10375882 ATCCTAAAAG
* * * *
10375892 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10375954 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10376016 TTT
1 TTT
10376019 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10376266 original size:62 final size:61
Alignment explanation
Indices: 10376170--10376295 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 61
10376160 ATCATAAAAG
* * * *
10376170 TTTGACAAGTTTGATGTTCATCCAAGAACTAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
* *
10376231 TTTGACAAGTTCGAAAGTTCGTCCAAGAA-TCAAGAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCG-AAGTTCATCCAAGAACT-AAGAGAGAAACAATTCTCACATAAATAAGTT
10376293 TTT
1 TTT
10376296 AATTGAAAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
61 13 0.23
62 44 0.77
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:10376543 original size:62 final size:61
Alignment explanation
Indices: 10376446--10376634 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
10376436 ATCGTAAAAG
* * * *
10376446 TTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC-ATACTCACGTAAATAAGTT
* *
10376508 TTTGAGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-TACTCACGTAAATAAGTT
* * * * * *
10376570 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTTACTTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC-ATACTCACGTAAATAAGTT
10376632 TTT
1 TTT
10376635 AATTCAAGGA
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
61 1 0.01
62 109 0.98
63 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACATACTCACGTAAATAAGTT
Found at i:10376933 original size:62 final size:62
Alignment explanation
Indices: 10376786--10376973 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 62
10376776 ATCGTAAAAG
* * * * *
10376786 TTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAA-AATTCTTACGTAAATAATTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
* * * * * *
10376847 TTTGACATGTTCGGAACTTTGTCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
* * *
10376909 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
10376971 TTT
1 TTT
10376974 TAATTCAAGG
Statistics
Matches: 107, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 35 0.33
62 72 0.67
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
Found at i:10377011 original size:340 final size:341
Alignment explanation
Indices: 10376170--10377655 Score: 2065
Period size: 340 Copynumber: 4.4 Consensus size: 341
10376160 ATCATAAAAG
* * * * * * *
10376170 TTTGACAAGTT-TGATGTTCATCCAAGAACTAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
*
10376234 GACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACA-TAAATAAGTTTTTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCA-AGTAAATAAGTTTTTAA
* * * * * ** *
10376298 TTGAAAGACCAAAACTGGTTTACAAAATGACAAACTAG-TTAGACCAAACGATG-GATTTTCCGA
130 TTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGA
** * * * * * * ** *
10376361 GCATGGAATGTTTGAAAATTTTCTAG-AAGTGATGGATTACCTTGAATACTTTTTGGAATCGAAG
195 GCATGGAATGTTCAAAAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTCAGGAACCGAAG
* *
10376425 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGA
259 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
10376490 TTCTCACGTAAATAAGTT
324 TTCTCACGTAAATAAGTT
* * *
10376508 TTTGAGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * * * **
10376573 GACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTTACTTAAATAAGTTTTTAAT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTTAAT
* *
10376638 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACT-GTTTAGA-CAAAATTATGCGATTTCTCGA
131 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATC-AAATTATGCGATTTCCCGA
* * * * * *
10376701 GCATGGATTGCTCAAAAAATTGCTCGAAAGAGTGGATCATCTCGAATGCTTTCAAGAACCGAAGT
195 GCATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGT
*
10376766 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAA-AAT
260 TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
* *
10376830 TCTTACGTAAATAATTT
325 TCTCACGTAAATAAGTT
* * * *
10376847 TTTGACATGTTCGGAACTTTGTCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
*
10376912 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTTTTTTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAG-TTTTTAA
* *
10376977 TTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTTAGATCAAATTATGCGATTTCCCGA
130 TTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGA
* * *
10377042 GCATGGAATGTTCGAAAAATTTCTCGAAAGAATGGATCATCTTGAATACTTTCATGAACCGAAGT
195 GCATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGT
10377107 TATATAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
260 TATA-AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
* *
10377171 TTCTTACGTAAATAATTT
324 TTCTCACGTAAATAAGTT
* * *
10377189 TTTGACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * *
10377254 GACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTTTTTAAC
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTTAAT
* * * *
10377319 TCAGGGACCAAAACTTGTTTACAAAAAGACAAATTA-TTCAGATCAAATTATGTGATTTCCCGAG
131 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGAG
* *
10377383 CATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTT
196 CATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
* * * * * *
10377448 ATAAAAGAAATCATAAAAGTTTGAAAAGTTTGGATGTTCATCCAAGTACCAACAGAGAAACAATT
261 ATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
10377513 CTCACGTAAATAAGTT
326 CTCACGTAAATAAGTT
* * *
10377529 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * *
10377594 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTT
10377656 GACAAGTTTA
Statistics
Matches: 1019, Mismatches: 117, Indels: 22
0.88 0.10 0.02
Matches are distributed among these distances:
338 12 0.01
339 269 0.26
340 421 0.41
341 180 0.18
342 137 0.13
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (341 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTTAAT
TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGAG
CATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
ATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTT
Found at i:10377224 original size:62 final size:61
Alignment explanation
Indices: 10377127--10377315 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 61
10377117 ATCGTAAAAG
* * * * *
10377127 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAATTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* *
10377189 TTTGACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * ** * * *
10377251 TTTGACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
10377313 TTT
1 TTT
10377316 AACTCAGGGA
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 109 0.99
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
Found at i:10377226 original size:681 final size:680
Alignment explanation
Indices: 10376190--10377655 Score: 2138
Period size: 681 Copynumber: 2.2 Consensus size: 680
10376180 TTGATGTTCA
* *
10376190 TCCAAGAACTAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
* *
10376255 AAGAATCAAGAGAGAACCAATTCTCACA-TAAATAAG-TTTTTAATTGAAAGACCAAAACTGGTT
66 AAGAACCAAGAGAGAACCAATTCTCA-AGTAAATAAGTTTTTTAATTCAAAGACCAAAACTGGTT
* * *
10376318 TACAAAATGACAAACTAGTTAGACCAAACGATGGATTTTCCGAGCATGGAATGTTTGAAAATTTT
130 TACAAAATGACAAACTAGTTAGACCAAACGATGGATTTCCCGAGCATGGAATGTTCGAAAAATTT
* * * *
10376383 CTAGAAGTGATGGATTACCTTGAATACTTTTTGGAATCGAAGTTATAAAAGAAATCGTAAAAGTT
195 CTAGAAGTAATGGATCACCTTGAATACTTTATGGAACCGAAGTTATAAAAGAAATCGTAAAAGTT
* *
10376448 TGACAAGTTCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTCTCACGTAAATAAGTTTTTGA
260 TGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
* * *
10376513 GAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAAATAAGTTTTTGACAA
325 CAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTGACAA
* * * ** *
10376578 GTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTTACTTAAATAAGTTTTTAATTCAAG
390 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACTCAAGTAAATAAGTTTTTAACTCAAG
* * * *
10376643 GACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGA-CAAAATTATGCGATTTCTCGAGCATGG
455 GACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATC-AAATTATGCGATTTCCCGAGCATGG
* * * * *
10376707 ATTGCTCAAAAAATTGCTCGAAAGAGTGGATCATCTCGAATGCTTTCAAGAACCGAAGTTATAAA
519 AATGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAATACTTTCAAGAACCAAAGTTATAAA
* * * * * *
10376772 AGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACTAAGAGAGAAA-AATTCTTAC
584 AGAAATCATAAAAGTTTGAAAAGTTCGGATGTTCATCCAAGAACCAACAGAGAAACAATTCTCAC
* * *
10376836 GTAAATAATTTTTTGACATGTTCGGAACTTTG
649 GTAAATAAGTTTTTGACAAGTTCGGAACTTCG
* * *
10376868 TCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
* * *
10376933 AAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTTTTTTAATTCAAGGACCAAAACTTGTTT
66 AAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACTGGTTT
* * **
10376998 ACAAAATGACAAACTATTTTAGATCAAATTATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT
131 ACAAAATGACAAACTA-GTTAGACCAAACGATG-GATTTCCCGAGCATGGAATGTTCGAAAAATT
* *
10377063 TCTCGAAAG-AATGGATCATCTTGAATACTTTCAT-GAACCGAAGTTATATAAA-AAATCGTAAA
194 TCTAG-AAGTAATGGATCACCTTGAATACTTT-ATGGAACCGAAGTTATA-AAAGAAATCGTAAA
* *
10377125 AGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAATTTT
256 AGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
*
10377190 TTGACAAGTTC-AGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
321 TTGACAAGTTCGA-AAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * * *
10377254 GACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTTTTTAAC
385 GACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACTCAAGTAAATAAGTTTTTAAC
* * *
10377319 TCAGGGACCAAAACTTGTTTACAAAAAGACAAATTATTCAGATCAAATTATGTGATTTCCCGAGC
450 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATCAAATTATGCGATTTCCCGAGC
* * *
10377384 ATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTA
515 ATGGAATGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAATACTTTCAAGAACCAAAGTTA
* *
10377449 TAAAAGAAATCATAAAAGTTTGAAAAGTTTGGATGTTCATCCAAGTACCAACAGAGAAACAATTC
580 TAAAAGAAATCATAAAAGTTTGAAAAGTTCGGATGTTCATCCAAGAACCAACAGAGAAACAATTC
* *
10377514 TCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG
645 TCACGTAAATAAGTTTTTGACAAGTTCGGAACTTCG
* *
10377550 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCC
1 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
* *
10377615 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
66 AAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTT
10377656 GACAAGTTTA
Statistics
Matches: 700, Mismatches: 78, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
677 1 0.00
678 92 0.13
679 41 0.06
680 13 0.02
681 412 0.59
682 141 0.20
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (680 bp):
TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCC
AAGAACCAAGAGAGAACCAATTCTCAAGTAAATAAGTTTTTTAATTCAAAGACCAAAACTGGTTT
ACAAAATGACAAACTAGTTAGACCAAACGATGGATTTCCCGAGCATGGAATGTTCGAAAAATTTC
TAGAAGTAATGGATCACCTTGAATACTTTATGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTT
GACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
AAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTGACAAG
TTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACTCAAGTAAATAAGTTTTTAACTCAAGG
ACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATCAAATTATGCGATTTCCCGAGCATGGAA
TGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAATACTTTCAAGAACCAAAGTTATAAAAG
AAATCATAAAAGTTTGAAAAGTTCGGATGTTCATCCAAGAACCAACAGAGAAACAATTCTCACGT
AAATAAGTTTTTGACAAGTTCGGAACTTCG
Found at i:10377539 original size:62 final size:62
Alignment explanation
Indices: 10377467--10377776 Score: 530
Period size: 62 Copynumber: 5.0 Consensus size: 62
10377457 ATCATAAAAG
* * * * *
10377467 TTTGAAAAGTTTGGATGTTCATCCAAGTACCAACAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10377529 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10377591 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10377653 TTTGACAAGTTTAGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTGTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10377715 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10377777 ATTAATTAAC
Statistics
Matches: 235, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 235 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10378202 original size:215 final size:216
Alignment explanation
Indices: 10377715--10378211 Score: 533
Period size: 215 Copynumber: 2.3 Consensus size: 216
10377705 TAAATAAGTT
* * * * * *
10377715 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* ** * *
10377780 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
* ** ** * *
10377845 AGTATGGAATGTTTGGAAATTTGCTCAAAGGAATAGATCGTCTTGAATACTATAAGGAACCTAAG
131 AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATAGATCAACTTAAATACTATAAGGAACCGAAG
* * *
10377910 TTATAAAAGAACTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* * ** * * *
10377931 TTTAACAAATTCGAAAGTTCAACCAACAACCAAG-GAGATACAATTAGT-ACGTAAATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA-TACTCACGTAAATAAGTTTT
* *
10377994 TAATTTAA-AGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGACAAAATGATGGGATTTTT
65 TAA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCT
* * * * *
10378058 CGAGCGTGG-AT-TTCTCAAAAAATTT-CT-AGAAGGAATGGATTAACTTAAATACTGTTA-GAA
129 CGAGCATGGAATGTT-T--AAAAATTTGCTCA-AAGGAATAGATCAACTTAAATACTATAAGGAA
10378118 CCGAAGTTATAAAAGAAATCGTAAAAG
190 CCGAAGTTATAAAAGAAATCGTAAAAG
* * * *
10378145 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
10378210 AA
66 AA
10378212 CAAGTTCGAA
Statistics
Matches: 227, Mismatches: 46, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
213 2 0.01
214 62 0.27
215 125 0.55
216 38 0.17
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATAGATCAACTTAAATACTATAAGGAACCGAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10378262 original size:62 final size:62
Alignment explanation
Indices: 10378149--10378267 Score: 168
Period size: 62 Copynumber: 1.9 Consensus size: 62
10378139 TAAAAGTTTG
* * * *
10378149 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTTA
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAAAAAGTCTTTA
* *
10378211 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGC-CACGTAAAAAAGT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA-AAAGTACTCACGTAAAAAAGT
10378268 TATTAATTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
62 46 0.92
63 4 0.08
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (62 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAAAAAGTCTTTA
Found at i:10378424 original size:277 final size:277
Alignment explanation
Indices: 10377931--10378545 Score: 708
Period size: 277 Copynumber: 2.2 Consensus size: 277
10377921 CTTGTGAAAG
* ** * * *
10377931 TTTAACAAATTCGAAAGTTCAACCAACAACCAAG-GAGATAC-AATTAG-TACGTAAATAAGTTT
1 TTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACAAATT-GCCACGTAAATAAGTTA
* ** * * **
10377993 TTAATTTAAAGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGACAAAATGATGGGATTTTT
64 TTAATTCAAAGACCAAAACTTGTTTACAAAATAACAAACCATTGAGACAAAATGATGCGATTTCC
* * * * * *
10378058 CGAGCGTGGATTTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATACTGTTAGAACCGAA
129 CGAGCATGGATGTCTCAAAAAATTGCTAGAAAGAATGGATCAACTTAAATACTGTAAGAACCGAA
* *
10378123 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGTGAAACA
194 GCTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA
* *
10378188 GTACTCATGTAAATAAGTC
259 ATACTCACGTAAATAAGTC
*
10378207 TTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGCCACGTAAAAAAGTTATT
1 TTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGCCACGTAAATAAGTTATT
* * * * * *
10378272 AATTCAAGGATCGAAACTTGTTTACAAAA-AACAAACCATTTAGACCAAATTATGCGATTTCCCG
66 AATTCAAAGACCAAAACTTGTTTACAAAATAACAAACCATTGAGACAAAATGATGCGATTTCCCG
* *
10378336 AGCATGGAATGT-TCAAAAAATTGCTCA-AAAGAATGGATCATCTTGAATACT-TACAAGAACCG
131 AGCATGG-ATGTCTCAAAAAATTGCT-AGAAAGAATGGATCAACTTAAATACTGT--AAGAACCG
* * * *
10378398 AAGCTATAAAGGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAA
192 AAGCTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA
* * *
10378463 CAATTCTTACGTAAATAAGTT
257 CAATACTCACGTAAATAAGTC
* * * *
10378484 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAA-ATAATT-CTCACGTAAATAAGTT
1 TTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACA-AATTGC-CACGTAAATAAGTT
10378546 TTTGACAAGT
Statistics
Matches: 286, Mismatches: 44, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
275 1 0.00
276 99 0.35
277 186 0.65
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.26
Consensus pattern (277 bp):
TTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGCCACGTAAATAAGTTATT
AATTCAAAGACCAAAACTTGTTTACAAAATAACAAACCATTGAGACAAAATGATGCGATTTCCCG
AGCATGGATGTCTCAAAAAATTGCTAGAAAGAATGGATCAACTTAAATACTGTAAGAACCGAAGC
TATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
ACTCACGTAAATAAGTC
Found at i:10378489 original size:62 final size:62
Alignment explanation
Indices: 10378422--10378669 Score: 361
Period size: 62 Copynumber: 4.0 Consensus size: 62
10378412 ATCGTAAAAG
* * *
10378422 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10378484 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10378546 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10378608 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10378670 ATTTAATTAA
Statistics
Matches: 164, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 164 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10378979 original size:894 final size:896
Alignment explanation
Indices: 10377529--10379445 Score: 2907
Period size: 894 Copynumber: 2.1 Consensus size: 896
10377519 TAAATAAGTT
* *
10377529 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
*
10377594 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* ** *
10377659 AAGTTTAGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTGTCACGTAAATAAGTTTTTGACAAG
131 AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTGACAAG
* * * *
10377724 TTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAG
196 TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAG
* * *
10377789 TCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGTATGGAA
261 TCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCCCGAGCATGGAA
*
10377854 TGTTTGGAAATTTGCTCAAAGGAATAGATCGTCTTGAATACTATAAGGAACCTAAGTTATAAAAG
326 TGTTTAGAAATTTGCTCAAAGGAATAGATCGTCTTGAATACTATAAGGAACCTAAGTTATAAAAG
* * *
10377919 AACTTGTGAAAGTTTAACAAATTCGAAAGTTCAACCAACAACCAAGGAGATACAATTAGTACGTA
391 AACTCGTGAAAGTTTAACAAATTCAAAAGTTCAACCAACAACCAAGGAGATACAATTACTACGTA
* *
10377984 AATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGACAAAATGAT
456 AATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGAT
* * * *
10378049 GGGATTTTTCGAGCGTGGATTTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATAC-TGT
521 GGCATTTTCCGAGCATGGATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATACTTGT
** *
10378113 TAG-AACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
586 TAGAAACAAAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
* * * *
10378177 AGAGTGAAACAGTACTCATGTAAATAAGTCTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGA
651 AGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAGAACCAAGA
* * *
10378242 GAGAACAAATTGC-CACGTAAAAAAGTTATTAATTCAAGGATCGAAACTTGTTTACAA-AAAACA
716 GAGAACAAATT-CTCACATAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAGAAAACA
*
10378305 AACCATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCA-AAAGAA
780 AACCATTTAGACCAAATTATGCGATTTCCCGAGCATGAAATGTTCAAAAAATTGCT-AGAAAGAA
*
10378369 TGGATCATCTTGAATA-CTTACAAGAACCGAAGCTATA-AAGGAAATCGTAAAAG
844 TGGATCATCTTGAATACCTT-CAAGAACCGAAGCTATATAA-GAAATCATAAAAG
* *
10378422 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * *
10378487 GACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
* * * *
10378552 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTTGACAAG
131 AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTGACAAG
*
10378617 TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAATTAAGA
196 TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTA-TTAATTAACA
10378682 GTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCCCGAGCATGGA
260 GTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCCCGAGCATGGA
* * *
10378747 ATGTTTAGAAATTTTCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAA
325 ATGTTTAGAAATTTGCTCAAAGGAATAGATCGTCTTGAATACTATAAGGAACCTAAGTTATAAAA
* ** * * *
10378812 GAACTCGTGAAAGTTTAACAAGTTCAAAAGTTCGTCCGAGAACCTAGGAGATACAATT-CTCACG
390 GAACTCGTGAAAGTTTAACAAATTCAAAAGTTCAACCAACAACCAAGGAGATACAATTACT-ACG
*** * *
10378876 TAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATG
454 TAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATG
* ** *
10378941 ATGGCATTTTCCGAGCATGGAATGT-TCGAAAAATTTCTAGAAGGAATGGATTCTCTTGAATACT
519 ATGGCATTTTCCGAGCATGG-ATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATACT
* * * * *
10379005 TTTTGGAAACAAAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAA
583 TGTTAGAAACAAAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAA
* * * * *
10379070 CCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAGAATCA
648 CCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAGAACCA
* * * * *
10379135 AGAGAGAACCAATTCTCACATAAATAAGTTTTTAATTCAAGGACCAAAACTTTTTTACAAGAAGA
713 AGAGAGAACAAATTCTCACATAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAGAAAA
* * * *
10379200 CAAACTATTTAGATCAAATTATGTGATTTCCCGAGCATGAAATGTTCGAAAAATTGCTAGAAAGA
778 CAAACCATTTAGACCAAATTATGCGATTTCCCGAGCATGAAATGTTCAAAAAATTGCTAGAAAGA
* *
10379265 ATGGATCATCTTGAATACCTTCAGGAACCGAAGTTATATAAGAAATCATAAAAG
843 ATGGATCATCTTGAATACCTTCAAGAACCGAAGCTATATAAGAAATCATAAAAG
*
10379319 TTTGACAAGTTTGGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * *
10379384 GACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10379446 AATTCAAGGA
Statistics
Matches: 920, Mismatches: 94, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
893 230 0.25
894 294 0.32
895 8 0.01
896 160 0.17
897 223 0.24
898 5 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (896 bp):
TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGAC
AAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTGACAAG
TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAG
TCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCCCGAGCATGGAA
TGTTTAGAAATTTGCTCAAAGGAATAGATCGTCTTGAATACTATAAGGAACCTAAGTTATAAAAG
AACTCGTGAAAGTTTAACAAATTCAAAAGTTCAACCAACAACCAAGGAGATACAATTACTACGTA
AATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGAT
GGCATTTTCCGAGCATGGATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATACTTGT
TAGAAACAAAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
AGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAGAACCAAGA
GAGAACAAATTCTCACATAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAGAAAACAA
ACCATTTAGACCAAATTATGCGATTTCCCGAGCATGAAATGTTCAAAAAATTGCTAGAAAGAATG
GATCATCTTGAATACCTTCAAGAACCGAAGCTATATAAGAAATCATAAAAG
Found at i:10379111 original size:62 final size:62
Alignment explanation
Indices: 10379041--10379167 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10379031 ATCCTAAAAG
* * * * * *
10379041 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* *
10379103 TTTGACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
10379165 TTT
1 TTT
10379168 AATTCAAGGA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTT
Found at i:10379389 original size:62 final size:62
Alignment explanation
Indices: 10379319--10379445 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10379309 ATCATAAAAG
* * * * *
10379319 TTTGACAAGTTTGGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10379381 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10379443 TTT
1 TTT
10379446 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10379446 original size:278 final size:277
Alignment explanation
Indices: 10378829--10380278 Score: 2255
Period size: 278 Copynumber: 5.2 Consensus size: 277
10378819 TGAAAGTTTA
* * * * *
10378829 ACAAGTTCAAAAGTTCGTCCGAGAACCTAG-GAGATA-CAATTCTCACGTAAATAACTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGA-ACCAATTCTCACGTAAATAAGTTTTTAAT
* * ** * * * *
10378892 TTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATG-GCATTTTCCGAG
65 TCAAGGACCAAAACTTG-TTTACAAAAGACAAACTATTTAGATCAAATTATGTG-ATTTCCCGAG
* * * ** **
10378956 CATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTC-TCTTGAATACTTTTTGGAAACAAAAG
128 CATGAAATGTTCGAAAAATTGCTAGAAAGAATGGA-TCATCTTGAATACTTTCAGG-AACCGAAG
* *
10379020 TTATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
191 TTATATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
10379085 TTCTTACGTAAATAAGTTTTTG
256 TTCTTACGTAAATAAGTTTTTG
* *
10379107 ACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
*
10379172 CAAGGACCAAAACTTTTTTACAAGAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAA-AAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
*
10379237 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACCTTCAGGAACCGAAGTTAT
130 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
*
10379302 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTTGTCCAAGAACCAAGAGAGAAACAATTCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10379367 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
10379385 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
10379450 CAAGGACCAAAACTTGTTTACAAGAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAA-AAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
* *
10379515 TGAAATGTTTGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACCTTCAGGAACCGAAGTTAT
130 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
10379580 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10379645 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
10379663 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
10379728 CAAGGACCAAAACTTGTTTACAAAACGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
10379793 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
130 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
10379858 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10379923 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
*
10379941 ACAAGTTCGAAAGTTCGTCCAAGAATTAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * * * * ** *
10380006 GAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATG-GATTTTCCGAGCA
66 CAAGGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
* * * * * ** *
10380070 TGGAATGTTTGAAAAATTTCTAG-AAGTAATGGATTACCTTGAATACTTTTTGGAATCGAAGTTA
130 TGAAATGTTCGAAAAATTGCTAGAAAG-AATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
* * * * * *
10380134 TAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTC
194 TATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
10380199 TTACGTAAATAAGTTTTTG
259 TTACGTAAATAAGTTTTTG
* * * * *
10380218 AGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10380279 GACAAGTTTG
Statistics
Matches: 1101, Mismatches: 64, Indels: 15
0.93 0.05 0.01
Matches are distributed among these distances:
276 3 0.00
277 199 0.18
278 776 0.70
279 122 0.11
280 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.28
Consensus pattern (277 bp):
ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACAAAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCAT
GAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
TAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
ACGTAAATAAGTTTTTG
Found at i:10379667 original size:62 final size:62
Alignment explanation
Indices: 10379597--10379723 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10379587 ATCATAAAAG
* * * *
10379597 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10379659 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10379721 TTT
1 TTT
10379724 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10379945 original size:62 final size:62
Alignment explanation
Indices: 10379875--10380001 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10379865 ATCATAAAAG
* * * *
10379875 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
** *
10379937 TTTGACAAGTTCGAAAGTTCGTCCAAGAATTAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10379999 TTT
1 TTT
10380002 AATTGAAAGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10380237 original size:62 final size:62
Alignment explanation
Indices: 10380152--10380340 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
10380142 ATCGTAAAAG
* * * * * * *
10380152 TTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* *
10380214 TTTGAGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * * *
10380276 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
10380338 TTT
1 TTT
10380341 AATTCAAGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
Found at i:10380627 original size:62 final size:62
Alignment explanation
Indices: 10380492--10380679 Score: 234
Period size: 62 Copynumber: 3.0 Consensus size: 62
10380482 ATCGTAAAAG
* * * * * *
10380492 TTTGACAAGATCGGATGTTCGTCCAAGAACTAAGAGAGAAA-AATTCTTACGTAAATAATTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
* * * * * *
10380553 TTTGACATGTTCGGAACTTTGTCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
* * *
10380615 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
10380677 TTT
1 TTT
10380680 TAATTCAAGG
Statistics
Matches: 106, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
61 34 0.32
62 72 0.68
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAAATAAGTT
Found at i:10380706 original size:340 final size:341
Alignment explanation
Indices: 10379875--10381361 Score: 2126
Period size: 340 Copynumber: 4.4 Consensus size: 341
10379865 ATCATAAAAG
* * * * *
10379875 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
**
10379940 GACAAGTTCGAAAGTTCGTCCAAGAATTAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* * * * * ** *
10380005 TGAAAGACCAAAACTGGTTTACAAAATGACAAACTAG-TTAGACCAAACGATG-GATTTTCCGAG
131 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGAG
** * * * * ** *
10380068 CATGGAATGTTTGAAAAATTTCTAG-AAGTAATGGATTACCTTGAATACTTTTTGGAATCGAAGT
196 CATGGAATGTTCAAAAAATTGCTCGAAAG-AATGGATCATCTTGAATACTTTCAGGAACCGAAGT
* *
10380132 TATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGAT
260 TATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10380197 TCTTACGTAAATAAGTT
325 TCTTACGTAAATAAGTT
* *
10380214 TTTGAGAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * *
10380279 GACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* *
10380344 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACT-GTTTAGA-CAAAATTATGCGATTTCTCGA
131 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATC-AAATTATGCGATTTCCCGA
* * * * * *
10380407 GCATGGATTGCTCAAAAAATTGCTCGAAAGAGTGGATCATCTCGAATGCTTTCAAGAACCGAAGT
195 GCATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGT
*
10380472 TATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACTAAGAGAGAAA-AAT
260 TATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
*
10380536 TCTTACGTAAATAATTT
325 TCTTACGTAAATAAGTT
* * * *
10380553 TTTGACATGTTCGGAACTTTGTCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* *
10380618 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTTTTTTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAA
* *
10380683 TTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTTAGATCAAATTATGCGATTTCCCGA
130 TTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGA
* * *
10380748 GCATGGAATGTTCGAAAAATTTCTCGAAAGAATGGATCATCTTGAATACTTTCATGAACCGAAGT
195 GCATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGT
*
10380813 TATATAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
260 TATA-AAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
*
10380877 TTCTTACGTAAATAATTT
324 TTCTTACGTAAATAAGTT
* * *
10380895 TTTGACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * * *
10380960 GACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTTTTTAAC
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* * * *
10381025 TCAGGGACCAAAACTTGTTTACAAAAAGACAAATTA-TTCAGATCAAATTATGTGATTTCCCGAG
131 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGAG
* *
10381089 CATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTT
196 CATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
* * * * * *
10381154 ATAAAAGAAATCATAAAAGTTTGAAAAGTTTGGATGTTCATCCAAGTACCAAGAGAGAAACAATT
261 ATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
* *
10381219 CTCATGTAAATAAGTT
326 CTTACGTAAATAAGTT
* * *
10381235 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * * *
10381300 GACAAGTTTGGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10381362 GACAAGTTTG
Statistics
Matches: 1029, Mismatches: 109, Indels: 19
0.89 0.09 0.02
Matches are distributed among these distances:
338 2 0.00
339 289 0.28
340 422 0.41
341 179 0.17
342 137 0.13
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (341 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTAGTTTAGATCAAATTATGCGATTTCCCGAG
CATGGAATGTTCAAAAAATTGCTCGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
ATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTTACGTAAATAAGTT
Found at i:10380899 original size:681 final size:680
Alignment explanation
Indices: 10379875--10381361 Score: 2196
Period size: 681 Copynumber: 2.2 Consensus size: 680
10379865 ATCATAAAAG
* ** *
10379875 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAACTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
**
10379940 GACAAGTTCGAAAGTTCGTCCAAGAATTAAGAGAGAACCAATTCTCACGTAAATAAG-TTTTTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAA
* *
10380004 TTGAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTTCCGAGC
131 TTCAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTCCCGAGC
* * * *
10380069 ATGGAATGTTTGAAAAATTTCTAGAAGTAATGGATTACCTTGAATACTTTTTGGAATCGAAGTTA
196 ATGGAATGTTCGAAAAATTTCTAGAAGTAATGGATCACCTTGAATACTTTATGGAACCGAAGTTA
* *
10380134 TAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACGATTC
261 TAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
10380199 TTACGTAAATAAGTTTTTGAGAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTC
326 TTACGTAAATAAGTTTTTGACAAGTTCAG-AAGTTCGTCCAAAAACCAAGAGAGAAACAATACTC
* * *
10380263 ATGTAAATAAGTTTTTGACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATACTCACG
390 ATGTAAATAAGTTTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACTCAAG
* * * *
10380328 TAAATAAGTTTTTAATTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGA-CAAAAT
455 TAAATAAGTTTTTAACTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATC-AAAT
* * * * *
10380392 TATGCGATTTCTCGAGCATGGATTGCTCAAAAAATTGCTCGAAAGAGTGGATCATCTCGAATGCT
519 TATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAATACT
* * * *
10380457 TTCAAGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAC
584 TTCAAGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGAAAAGATCGGATGTTCATCCAAGAAC
* * *
10380522 TAAGAGAGAAA-AATTCTTACGTAAATAATTT
649 CAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10380553 TTTGACATGTTCGGAACTTTGTCCAAGAACCAAGTGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAACTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10380618 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCAAGTAATTAAGTTTTTTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAA
* * * * **
10380683 TTCAAGGACCAAAACTTGTTTACAAAATGACAAACTATTTTAGATCAAATTATGCGATTTCCCGA
131 TTCAAAGACCAAAACTGGTTTACAAAATGACAAACTA-GTTAGACCAAACGATG-GATTTCCCGA
* *
10380748 GCATGGAATGTTCGAAAAATTTCTCGAAAG-AATGGATCATCTTGAATACTTTCAT-GAACCGAA
194 GCATGGAATGTTCGAAAAATTTCTAG-AAGTAATGGATCACCTTGAATACTTT-ATGGAACCGAA
*
10380811 GTTATATAAA-AAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAC
257 GTTATA-AAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAAC
* *
10380875 AATTCTTACGTAAATAATTTTTTGACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAAT
321 AATTCTTACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAAAACCAAGAGAGAAACAAT
* * * *
10380940 ACTCATGTAAATAAGTTTTTGACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCT
386 ACTCATGTAAATAAGTTTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACT
* * *
10381005 CAAGTAATTAAGTTTTTAACTCAGGGACCAAAACTTGTTTACAAAAAGACAAATTATTCAGATCA
451 CAAGTAAATAAGTTTTTAACTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATCA
* * *
10381070 AATTATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAAT
516 AATTATGCGATTTCCCGAGCATGGAATGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAAT
* * *
10381135 ACTTTCAGGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGAAAAGTTTGGATGTTCATCCAAG
581 ACTTTCAAGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGAAAAGATCGGATGTTCATCCAAG
* *
10381200 TACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
646 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10381235 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAACTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10381300 GACAAGTTTGGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10381362 GACAAGTTTG
Statistics
Matches: 719, Mismatches: 81, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
678 109 0.15
679 41 0.06
680 12 0.02
681 417 0.58
682 140 0.19
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (680 bp):
TTTGACAAGTTCGGAACTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTTAA
TTCAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTCCCGAGC
ATGGAATGTTCGAAAAATTTCTAGAAGTAATGGATCACCTTGAATACTTTATGGAACCGAAGTTA
TAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
TTACGTAAATAAGTTTTTGACAAGTTCAGAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCA
TGTAAATAAGTTTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAACCAATACTCAAGT
AAATAAGTTTTTAACTCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGATCAAATTA
TGCGATTTCCCGAGCATGGAATGCTCAAAAAATTGCTCAAAAGAATGGATCATCTCGAATACTTT
CAAGAACCAAAGTTATAAAAGAAATCATAAAAGTTTGAAAAGATCGGATGTTCATCCAAGAACCA
AGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10380930 original size:62 final size:61
Alignment explanation
Indices: 10380833--10381021 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 61
10380823 ATCGTAAAAG
* * * * *
10380833 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAATTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* *
10380895 TTTGACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTC-GAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * ** * * *
10380957 TTTGACAAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTT
1 TTTGACAAGTTCG-AAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
10381019 TTT
1 TTT
10381022 AACTCAGGGA
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 109 0.99
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAAAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
Found at i:10381245 original size:62 final size:62
Alignment explanation
Indices: 10381173--10381420 Score: 424
Period size: 62 Copynumber: 4.0 Consensus size: 62
10381163 ATCATAAAAG
* * * * *
10381173 TTTGAAAAGTTTGGATGTTCATCCAAGTACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10381235 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10381297 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10381359 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10381421 ATTAATTAAC
Statistics
Matches: 177, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 177 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Done.