Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 51 of 144
Found at i:10381577 original size:402 final size:401
Alignment explanation
Indices: 10380833--10381638 Score: 1078
Period size: 402 Copynumber: 2.0 Consensus size: 401
10380823 ATCGTAAAAG
* * *
10380833 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAATTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10380898 GACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCATGTAAATAAGTTTTTGAC
66 GACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
* ** * * *
10380963 AAGTTCGAAAGTTCGTCCAAGAGCCAAGAGAGAGCCAATTCTCAAGTAATTAAGTTTTTAACTCA
131 AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAACTAAGTTATTAACTAA
** * * *
10381028 GGGACCAAAACTTGTTTACAAAAAGACAAATTATTCAGATCAAATTATGTGATTTCCCGAGCATG
196 CAGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGACCAAATGATGTGATTTCCCGAGCATG
* *
10381093 GAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAGGAACCAAAGTTATAA
261 GAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTGTAAGGAACCAAAGTTATAA
* * * * **
10381158 AAGAAATCATAAAAGTTTGAA-AAGTTTGGATGTTCATCCAAGTACCAAGAGAGAAACAATT-CT
326 AAGAAATCATAAAAGTTT-AACAAATTCGAAAGTTCATCCAACAACCAAG-GAGAAACAATTACT
*
10381221 CATGTAAATAAGTT
389 -ACGTAAATAAGTT
*
10381235 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** * *
10381300 GACAAGTTTGGAAGTTCGTCCAAGAACCT-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
66 GACAAGTTCAGAAGTTCGTCCAA-AAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGA
* * * * *
10381364 CAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTA
130 CAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAACTAAGTTATTAACTA
* * ** * *
10381429 ACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGTAT
195 ACAGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGACCAAATGATGTGATTTCCCGAGCAT
*** * * * *
10381494 GGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTAAGGAACCTAAGTTATA
260 GGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTGTAAGGAACCAAAGTTATA
* ** * * *
10381559 AAAGAACTTGTGAAAGTTTAACAAATTCGAAAGTTCATCCAACAACCAAGGAGATACAATTAGTA
325 AAAGAAATCATAAAAGTTTAACAAATTCGAAAGTTCATCCAACAACCAAGGAGAAACAATTACTA
10381624 CGTAAATAAGTT
390 CGTAAATAAGTT
10381636 TTT
1 TTT
10381639 AATTTAAAGA
Statistics
Matches: 348, Mismatches: 53, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
401 27 0.08
402 317 0.91
403 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.28
Consensus pattern (401 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCAGAAGTTCGTCCAAAAACTAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
AAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAAGTAACTAAGTTATTAACTAA
CAGACCAAAACTTGTTTACAAAAAGACAAACTATTCAGACCAAATGATGTGATTTCCCGAGCATG
GAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTGTAAGGAACCAAAGTTATAA
AAGAAATCATAAAAGTTTAACAAATTCGAAAGTTCATCCAACAACCAAGGAGAAACAATTACTAC
GTAAATAAGTT
Found at i:10381846 original size:215 final size:216
Alignment explanation
Indices: 10381359--10381855 Score: 544
Period size: 215 Copynumber: 2.3 Consensus size: 216
10381349 TAAATAAGTT
* * * * * * *
10381359 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* ** * *
10381424 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
* ** ** *
10381489 AGTATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTAAGGAACCTAAG
131 AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATGGATCAACTTAAATACTGTAAGGAACCTAAG
* * *
10381554 TTATAAAAGAACTTGTGAAAG
196 TTATAAAAGAAATCGTAAAAG
* * * * *
10381575 TTTAACAAATTCGAAAGTTCATCCAACAACCAAG-GAGATACAATTAGT-ACGTAAATAAGTTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAA-TACTCACGTAAATAAGTTTT
* *
10381638 TAATTTAA-AGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGACAAAATGATGGGATTTTT
65 TAA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCT
* * **
10381702 CGAGCGTGG-AT-TTCTCAAAAAATTT-CT-AGAAGGAATGGATTAACTTAAATACT-TTTGGAA
129 CGAGCATGGAATGTT-T--AAAAATTTGCTCA-AAGGAATGGATCAACTTAAATACTGTAAGGAA
10381762 -CTGAAGTTATAAAAGAAATCGTAAAAG
190 CCT-AAGTTATAAAAGAAATCGTAAAAG
* * * *
10381789 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
10381854 AA
66 AA
10381856 CAAGTTCGAA
Statistics
Matches: 231, Mismatches: 41, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
213 4 0.02
214 64 0.28
215 124 0.54
216 39 0.17
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATGGATCAACTTAAATACTGTAAGGAACCTAAG
TTATAAAAGAAATCGTAAAAG
Found at i:10381906 original size:62 final size:62
Alignment explanation
Indices: 10381793--10381911 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
10381783 TAAAAGTTTG
* * * *
10381793 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTTA
1 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAAAAAGTCTTTA
* * * *
10381855 ACAAGTTCGAAAGTTCGTCCAATAACCAAGAGAGAACAAATTGC-CACGTAAAAAAGT
1 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA-AAAGTACTCACGTAAAAAAGT
10381912 TATTAATTCA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 44 0.92
63 4 0.08
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.21
Consensus pattern (62 bp):
ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAAAAAGTCTTTA
Found at i:10382134 original size:62 final size:62
Alignment explanation
Indices: 10382067--10382190 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
10382057 ATCGTAAAAG
* * *
10382067 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10382129 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10382191 ATTTAATTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10382162 original size:278 final size:275
Alignment explanation
Indices: 10381575--10382411 Score: 934
Period size: 278 Copynumber: 3.0 Consensus size: 275
10381565 CTTGTGAAAG
* * * * *
10381575 TTTAACAAATTCGAAAGTTCA-TCCAACAACCAAG-GAGATACAATTAGT-ACGTAAATAAGTTT
1 TTTAACAAGTTCGAAAGTT-AGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTA
* * * * * *
10381637 TTAATTTAAAGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGACAAAATGATGGGATTTTT
64 TTAA-TT-AAGATCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
* * * * * * ** *
10381702 CGAGCGTGG-ATTTCTCAAAAAATTTCT-AGAAGGAATGGATTAACTTAAATACTTTTGGAACTG
127 CGAGCATGGAATGT-TCAAAAAATTGCTCA-AAGGAATGGATCATCTTGAATACTTTAAGAACCG
* *
10381765 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAA
190 AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAA
* * * *
10381830 CAGTACTCATGTAAATAAGTC
255 CAATTCTCACGTAAATAAGTT
* * *
10381851 TTTAACAAGTTCGAAAGTTCGTCCAATAACCAAGAGAG-AACAAATTGC-CACGTAAAAAAGTTA
1 TTTAACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAAC-AATT-CTCACGTAAATAAGTTA
** * *
10381914 TTAATTCAAGGATCAAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGATTTCC
64 TTAATT-AA-GATCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
*
10381979 CGAGCATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGA
127 CGAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTT-AAGAACCGA
* * * * *
10382044 AGCTATAAAGGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAAC
191 AGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAAC
*
10382109 AATTCTTACGTAAATAAGTT
256 AATTCTCACGTAAATAAGTT
* * * *
10382129 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTAACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTA-T
* * *
10382194 TAATTAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTC
65 TAATTAAGA-T-CAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC
* * * * * *
10382259 GAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAG
128 GAGCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAA-GAACCGAA
* * * * * * *
10382324 GTTATAAAAGAACTCGTGAAAGTTTAACAAGTTCAAAAGTTCGTCCGAGAACCTAG-GAGATACA
192 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA
*
10382388 ATTCTCACGTAAATAACTT
257 ATTCTCACGTAAATAAGTT
10382407 TTTAA
1 TTTAA
10382412 TTTAAAGACC
Statistics
Matches: 470, Mismatches: 77, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
276 36 0.08
277 113 0.24
278 166 0.35
279 155 0.33
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (275 bp):
TTTAACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATT
AATTAAGATCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAG
CATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGAACCGAAGTTA
TAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
TCACGTAAATAAGTT
Found at i:10382563 original size:215 final size:216
Alignment explanation
Indices: 10382149--10382625 Score: 599
Period size: 215 Copynumber: 2.2 Consensus size: 216
10382139 TCGGATGTTA
* *
10382149 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAATTAAGAGTCCAAAACTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTTAATTAAGAGACCAAAACTT
* * *
10382214 ATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAA
65 ATTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTGAAAAA
* * * * * *
10382279 TTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAGGTTATAAAAGAACTCGTGAA
130 TTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAACGAAGTTATAAAAGAAATCCTAAA
10382344 AGTTTAACAAGTTCAAAAGTTC
195 AGTTTAACAAGTTCAAAAGTTC
* * * *
10382366 GTCCGAGAACCTAG-GAGATACAATTCTCACGTAAATAACTTTTTAATTTAA-AGACCAAAACTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTAAGAGACCAAAACTT
* ***
10382429 GTTTTTTAAATGACAAACTATTTAGACCAAATGATG-GCATTT-TCCGAGCATGGAATGTTCGAA
65 ATTTACAAAATGACAAACTATTTAGACCAAATGATGTG-ATTTCT-CGAGCATGGAATGTT-GAA
**
10382492 AAATTT-CT-AGAAGGAATGGATTC-TCTTGAATACTTTTTGGAAACGAAGTTATAAAAGAAATC
127 AAATTTGCTCA-AAGGAATGGA-TCGTCTTGAATACTTTAAGGAAACGAAGTTATAAAAGAAATC
* *** *
10382554 CTAAAAGTTTGACAAGTTTGGATGTTC
190 CTAAAAGTTTAACAAGTTCAAAAGTTC
*
10382581 GTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10382626 GACAAGTTCG
Statistics
Matches: 222, Mismatches: 31, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
214 3 0.01
215 143 0.64
216 64 0.29
217 12 0.05
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (216 bp):
GTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAGAGACCAAAACTTA
TTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCATGGAATGTTGAAAAAT
TTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAAACGAAGTTATAAAAGAAATCCTAAAA
GTTTAACAAGTTCAAAAGTTC
Found at i:10382631 original size:62 final size:62
Alignment explanation
Indices: 10382561--10382687 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10382551 ATCCTAAAAG
* * * * *
10382561 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10382623 TTTGACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10382685 TTT
1 TTT
10382688 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10382883 original size:278 final size:277
Alignment explanation
Indices: 10382350--10383798 Score: 2210
Period size: 278 Copynumber: 5.2 Consensus size: 277
10382340 TGAAAGTTTA
* * * * *
10382350 ACAAGTTCAAAAGTTCGTCCGAGAACCTAG-GAGATA-CAATTCTCACGTAAATAACTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGA-ACCAATTCTCACGTAAATAAGTTTTTAAT
* * ** * * * *
10382413 TTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATG-GCATTTTCCGAG
65 TCAAGGACCAAAACTTG-TTTACAAAAGACAAACTATTTAGATCAAATTATGTG-ATTTCCCGAG
* * ** *
10382477 CATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTC-TCTTGAATACTTTTTGGAAACGAAGT
128 CATGGAATGTTCGAAAAATTGCTAGAAAGAATGGA-TCATCTTGAATACTTTCAGGAACCGAAGT
* *
10382541 TATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
192 TATATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAAT
10382606 TCTTACGTAAATAAGTTTTTG
257 TCTTACGTAAATAAGTTTTTG
*
10382627 ACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
*
10382692 CAAGGACCAAAACTTGTTTACAAGAAGACAAACTATTTAGATCAAATTATGTGATCTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAA-AAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
*
10382757 TGAAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
130 TGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
* *
10382822 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATATTTGTCCAAGAACCAAGAGAGAAACAATTCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10382887 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
* *
10382905 ACAAGTTCGAAAGCTCATCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
*
10382970 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGATCAAATTATGTGATTTCCTGAGCA
66 CAAGGACCAAAACTTGTTTAC-AAAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
* * *
10383035 TGGAATGTTTGAAAAATTGCTAGAAAGAATGGATTATCTTGAATACTTTCAGGAACTGAAGTTAT
130 TGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
*
10383100 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGACACAATTCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10383165 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
10383183 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
10383248 CAAGGACCAAAACTTGTTTACAAAACGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAGGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
* *
10383313 TGAAATGCTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
130 TGGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
* *
10383378 ATAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATGCT
195 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
10383443 TACGTAAATAAGTTTTTG
260 TACGTAAATAAGTTTTTG
* *
10383461 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAAAACCAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * * * * ** *
10383526 GAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATG-GATTTTCCGAGCA
66 CAAGGACCAAAACTTGTTTACAAAA-GACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
* * * * ** *
10383590 TGGAATGTTTGAAAAATTTCTAG-AAGTAATGGATTACCTTGAATACTTTTTGGAATCGAAGTTA
130 TGGAATGTTCGAAAAATTGCTAGAAAG-AATGGATCATCTTGAATACTTTCAGGAACCGAAGTTA
* * * * *
10383654 TAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTC
194 TATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTC
10383719 TTACGTAAATAAGTTTTTG
259 TTACGTAAATAAGTTTTTG
* * *
10383738 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAA-CAATACTCATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGA-GAACCAATTCTCACGTAAATAAGTTTTT
10383799 GACAAGTTTG
Statistics
Matches: 1085, Mismatches: 78, Indels: 18
0.92 0.07 0.02
Matches are distributed among these distances:
276 3 0.00
277 232 0.21
278 847 0.78
279 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (277 bp):
ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
CAAGGACCAAAACTTGTTTACAAAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCAT
GGAATGTTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATA
TAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTT
ACGTAAATAAGTTTTTG
Found at i:10382885 original size:494 final size:495
Alignment explanation
Indices: 10381851--10382903 Score: 1392
Period size: 494 Copynumber: 2.1 Consensus size: 495
10381841 TAAATAAGTC
* * * *
10381851 TTTAACAAGTTCGAAAGTTCGTCCAATAACCAAGAGAG-AACAAATTGC-CACGTAAAAAAGTTA
1 TTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATT-CTCACGTAAATAAGTTT
* * *
10381914 TTAATTCAAGGATCAAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATGCGATTTCC
64 TTAATTCAAAGACCAAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATGATGCGATTTCC
*
10381979 CGAGCATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGA
129 CGAGCATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAAACGA
* * *
10382044 AGCTATAAAGGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAAC
194 AGCTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAAC
* *
10382109 AATTCTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAAT
259 AATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAAT
* * *
10382174 TCTCACGTAACTAAGTTATTTAATTAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTG
324 TCTCACGTAAATAAGTTATTTAATTAAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAG
* * * * * * *
10382239 ACCAAATGATGTGATTTCTCGAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTT
389 ACCAAATGATGTGATCTCCCGAGCATGAAATGTTGAGAAAATTGCTCAAAAGAATGGATCATCTT
* * * * *
10382304 GAATACTTTAAGGAACCTAGGTTATAAAAGAACTCGTGAAAG
454 GAATACTTTAAGGAACCGAAGTTATAAAAGAAATCATAAAAG
* * * *
10382346 TTTAACAAGTTCAAAAGTTCGTCCGAGAACCTAG-GAGATACAATTCTCACGTAAATAACTTTTT
1 TTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *** ** *
10382410 AATTTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATG-GCATTTTCC
66 AATTCAAAGACCAAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATGATGCG-ATTTCCC
* * * ***
10382474 GAGCATGGAATGTTCGAAAAATTTCT-AGAAGGAATGGATTC-TCTTGAATACTTTTTGGAAACG
130 GAGCATGGAATGTTCAAAAAATTGCTCA-AAAGAATGGA-TCATCTTGAATACTTTCAAGAAACG
* *
10382537 AAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAA
193 AAGCTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAA
* *
10382602 CAATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAA
258 CAATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAA
*
10382667 TTCTCACGTAAATAAGTT-TTTAATTCAAG-GACCAAAACTTGTTTACAAGAA-GACAAACTATT
323 TTCTCACGTAAATAAGTTATTTAATT-AAGAGACCAAAACTTATTTACAA-AATGACAAACTATT
* *
10382729 TAGATCAAATTATGTGATCTCCCGAGCATGAAATGTTCGA-AAAATTGCT-AGAAAGAATGGATC
386 TAGACCAAATGATGTGATCTCCCGAGCATGAAATGTT-GAGAAAATTGCTCA-AAAGAATGGATC
* *
10382792 ATCTTGAATACTTTCAGGAACCGAAGTTATATAAGAAATCATAAAAG
449 ATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAAATCATAAAAG
* ** * * *
10382839 TTTGACAAGTTTGGATA-TTTGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTT
1 TTTAACAAG-TTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
10382903 T
65 T
10382904 GACAAGTTCG
Statistics
Matches: 483, Mismatches: 64, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
492 1 0.00
493 149 0.31
494 299 0.62
495 34 0.07
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (495 bp):
TTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
AATTCAAAGACCAAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATGATGCGATTTCCCG
AGCATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAAACGAAG
CTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
TTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTC
TCACGTAAATAAGTTATTTAATTAAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGAC
CAAATGATGTGATCTCCCGAGCATGAAATGTTGAGAAAATTGCTCAAAAGAATGGATCATCTTGA
ATACTTTAAGGAACCGAAGTTATAAAAGAAATCATAAAAG
Found at i:10382903 original size:772 final size:769
Alignment explanation
Indices: 10381297--10383181 Score: 2689
Period size: 771 Copynumber: 2.4 Consensus size: 769
10381287 TAAATAAGTT
* *
10381297 TTTGACAAGTTTGGA-AGTTCGTCCAAGAACCTAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTTGGATA-TTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTT
* * *
10381361 TGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTA-TTA
65 TGACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTA
*
10381425 ATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGA
130 ATTAAGAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGA
* *
10381490 GTATGGAATGTTTGGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTAAGGAACCTAAGT
195 GCATGGAATGTTT-GAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGT
* * * *
10381555 TATAAAAGAACTTGTGAAAGTTTAACAAATTCGAAAGTTCATCCAACAACCAAGGAGATACAATT
259 TATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATT
* *
10381620 AGTACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGGCAAACTATTGAGAC
324 -CTACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGAC
* * * *
10381685 AAAATGATGGGATTTTTCGAGCGTGGATTTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAA
388 AAAATGATGGCATTTTCCGAGCATGGATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAA
*
10381750 ATACTTTTGGAACTGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA
453 ATACTTTTGGAACTGAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCATCCAA
* * * * *
10381815 GAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTTAACAAGTTCGAAAGTTCGTCCAATAA
518 GAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAGAA
*
10381880 CCAAGAGAGAACAAATTGCCACGTAAAAAAGTTATTAATTCAAGGATCAAAACTTGTTTACAAAA
583 CCAAGAGAGAACAAATTGCCACGTAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAA
* *
10381945 AAACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCAAA
648 AAACAAACTATTTAGACCAAATTATGCGATCTCCCGAGCATGAAATGTTCAAAAAATTGCTCAAA
*
10382010 AGAATGGATCATCTTGAATACTTTCAAGAACCGAAGCTATAAAGGAAATCGTAAAAG
713 AGAATGGATCATCTTGAATACTTTCAAGAACCGAAGCTATAAAGGAAATCATAAAAG
* * *
10382067 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
*
10382132 GACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAA
66 GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAA
*
10382197 TTAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAG
131 TTAAGAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAG
*
10382262 CATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAGGTT
196 CATGGAATGTTT-GAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTT
* * *
10382327 ATAAAAGAACTCGTGAAAGTTTAACAAGTTCAAAAGTTCGTCCGAGAACCTAGGAGATACAATTC
260 ATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATTC
* *** * *
10382392 TCACGTAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACC
325 T-ACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACA
* ** *
10382457 AAATGATGGCATTTTCCGAGCATGGAATGT-TCGAAAAATTTCTAGAAGGAATGGATTCTCTTGA
389 AAATGATGGCATTTTCCGAGCATGG-ATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAA
* * * *
10382521 ATACTTTTTGGAAAC-GAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCC
453 ATAC-TTTTGG-AACTGAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCATCC
* * * *
10382585 AAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTGACAAGTTCGAAAGTTAGTCCAAG
516 AAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAG
* * * *
10382650 AATCAAGAGAGAACCAATT-CTCACGTAAATAAGTTTTTAATTCAAGGACCAAAACTTGTTTACA
581 AACCAAGAGAGAACAAATTGC-CACGTAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACA
* * * * *
10382714 AGAAGACAAACTATTTAGATCAAATTATGTGATCTCCCGAGCATGAAATGTTCGAAAAATTGCT-
645 AAAAAACAAACTATTTAGACCAAATTATGCGATCTCCCGAGCATGAAATGTTCAAAAAATTGCTC
* *
10382778 AGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTATATAA-GAAATCATAAAAG
710 A-AAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGCTATA-AAGGAAATCATAAAAG
*
10382839 TTTGACAAGTTTGGATATTTGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTTGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
* * * * *
10382904 GACAAGTTCGAAAGCTCA-TCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT-TTTA
66 GACAAGTTCGGAAG-TTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTA
* * * * *
10382967 ATTCAAG-GACCAAAACTTGTTTACAAAAAGACAAACTATTTAGATCAAATTATGTGATTTC-CT
130 ATT-AAGAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTC-
* * ** *
10383030 GAGCATGGAATGTTTGAAAAATTGCT-AGAAAGAATGGATTATCTTGAATACTTTCAGGAA-CTG
193 GAGCATGGAATGTTTG-AAATTTGCTCA-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCT-
* * * * * * * * *
10383093 AAGTTATATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGACA
255 AAGTTATAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGATA
10383158 CAATTCTTACGTAAATAAGTTTTT
319 CAATTC-TACGTAAATAAGTTTTT
10383182 GACAAGTTCG
Statistics
Matches: 996, Mismatches: 102, Indels: 32
0.88 0.09 0.03
Matches are distributed among these distances:
770 121 0.12
771 451 0.45
772 416 0.42
773 8 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (769 bp):
TTTGACAAGTTTGGATATTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
GACAAGTTCGGAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAA
TTAAGAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAG
CATGGAATGTTTGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTA
TAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATACAATTCT
ACGTAAATAAGTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAA
ATGATGGCATTTTCCGAGCATGGATGTCTCAAAAAATTTCTAGAAGGAATGGATTAACTTAAATA
CTTTTGGAACTGAAGTTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAGAA
CCAAGAGAGAAACAATACTCACGTAAATAAGTCTTTAACAAGTTCGAAAGTTAGTCCAAGAACCA
AGAGAGAACAAATTGCCACGTAAAAAAGTTATTAATTCAAGGACCAAAACTTGTTTACAAAAAAA
CAAACTATTTAGACCAAATTATGCGATCTCCCGAGCATGAAATGTTCAAAAAATTGCTCAAAAGA
ATGGATCATCTTGAATACTTTCAAGAACCGAAGCTATAAAGGAAATCATAAAAG
Found at i:10383187 original size:62 final size:62
Alignment explanation
Indices: 10383117--10383243 Score: 193
Period size: 62 Copynumber: 2.0 Consensus size: 62
10383107 ATCATAAAAG
* * * *
10383117 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAG-ACACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAC-CAATTCTCACGTAAATAAGTT
*
10383179 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
10383241 TTT
1 TTT
10383244 AATTCAAGGA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
62 57 0.97
63 2 0.03
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTT
Found at i:10383492 original size:62 final size:62
Alignment explanation
Indices: 10383395--10383521 Score: 184
Period size: 62 Copynumber: 2.0 Consensus size: 62
10383385 ATCATAAAAG
* * * *
10383395 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAA-CAATGCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA-AAACCAATGCTCACATAAATAAGTT
* *
10383457 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAAAACCAATTCTCACATAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATGCTCACATAAATAAGTT
10383519 TTT
1 TTT
10383522 AATTGAAAGA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 3 0.05
62 55 0.95
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAAAACCAATGCTCACATAAATAAGTT
Found at i:10383757 original size:62 final size:62
Alignment explanation
Indices: 10383672--10383860 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
10383662 ATCGTAAAAG
* * * * *
10383672 TTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10383734 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10383796 TTTGACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10383858 TTT
1 TTT
10383861 AATTCAAGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10384078 original size:340 final size:339
Alignment explanation
Indices: 10383395--10384200 Score: 1186
Period size: 340 Copynumber: 2.4 Consensus size: 339
10383385 ATCATAAAAG
* * *
10383395 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATGCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* * * *
10383460 GACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAAAACCAATTCTCACATAAATAAGTTTTTAAT
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* * *
10383525 TGAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTTCCGAGCA
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTAGTTAGACAAAACGATGGATTTTCCGAGCA
* * * * *** *
10383590 TGGAATGTTTGAAAAATTTCTAGAAGTAATGGATTACCTTGAATACTTTTTGGAATCGAAGTTAT
196 TGGAATGCTCGAAAAATTGCTAGAAGTAATGGATCACCTTGAATACTTTCAAGAACCGAAGTTAT
* *
10383655 AAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCT
261 AAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCCTCCAAGAACCAAGAGAGAAACAATTCT
10383720 TACGTAAATAAGTT
326 TACGTAAATAAGTT
* * *
10383734 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* *
10383799 GACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* * * **
10383864 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACT-GTTTAGACAAAATTATGCGA-TTTCTCGA
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTAG-TTAGACAAAACGATG-GATTTTC-CGA
* * * *
10383927 GCATGGATTGCTCGAAAAATTGCTCGAAAG-AATGGATCATCTTGAATGCTTTCAAGAACCGAAG
193 GCATGGAATGCTCGAAAAATTGCTAG-AAGTAATGGATCACCTTGAATACTTTCAAGAACCGAAG
* *
10383991 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCCTCCAAGAACCAAGAGAGAAATAA
257 TTATAAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCCTCCAAGAACCAAGAGAGAAACAA
10384056 TTCTTACGTAAATAAGTT
322 TTCTTACGTAAATAAGTT
* *
10384074 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
* **
10384139 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10384201 GACAAGTTTG
Statistics
Matches: 417, Mismatches: 46, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
338 1 0.00
339 164 0.39
340 249 0.60
341 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (339 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTT
GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTAGTTAGACAAAACGATGGATTTTCCGAGCA
TGGAATGCTCGAAAAATTGCTAGAAGTAATGGATCACCTTGAATACTTTCAAGAACCGAAGTTAT
AAAAGAAATCGTAAAAGTTTGACAAGATCGGATGTTCCTCCAAGAACCAAGAGAGAAACAATTCT
TACGTAAATAAGTT
Found at i:10384079 original size:62 final size:62
Alignment explanation
Indices: 10384012--10384259 Score: 424
Period size: 62 Copynumber: 4.0 Consensus size: 62
10384002 ATCGTAAAAG
* * * * *
10384012 TTTGACAAGTTCGGATGTTCCTCCAAGAACCAAGAGAGAAATAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10384074 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10384136 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10384198 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10384260 ATTAATTAAC
Statistics
Matches: 177, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 177 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10384201 original size:402 final size:401
Alignment explanation
Indices: 10383672--10384477 Score: 1089
Period size: 402 Copynumber: 2.0 Consensus size: 401
10383662 ATCGTAAAAG
* * *
10383672 TTTGACAAGATCGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* *
10383737 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAACAATACTCATGTAAATAAGTTTTTGAC
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
* * *
10383802 AAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTTTTTAATTCA
131 AAGTTTGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATT-A
* * * *
10383867 A-GGACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGACAAAATTATGCGATTTCTCGAGCAT
195 ACAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGCAT
* * *
10383931 GGATTGCTCGAAAAATTGCTCGAAA-GAATGGATCATCTTGAATGCTTTCAA-GAACCGAAGTTA
260 GGAATGCTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAATACTGT-AAGGAACCGAAGTTA
* * * * * *
10383994 TAAAAGAAATCGTAAAAGTTTGAC-AAGTTCGGATGTTCCTCCAAGAACCAAGAGAGAAATAATT
323 TAAAAGAAATCGTAAAAGTTTAACGAA-TTCGAAAGTTCATCCAACAACCAAG-GAGAAACAATT
**
10384058 CTTACGTAAATAAGTT
386 AGTACGTAAATAAGTT
* *
10384074 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * * *
10384139 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTGAC
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
* * * *
10384204 AAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAA
131 AAGTTTGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAA
* * * * *
10384269 CAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGCATG
196 CAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGCATG
* * * * * * * *
10384334 GAATGTTTGGAAATTTGCTCAAAGGAGTTGATCGTCTTGAATACTGTAAGGAACCTAAGTTATAA
261 GAATGCTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTGTAAGGAACCGAAGTTATAA
* * * *
10384399 AAGAACTTGTGAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGGAGATACAATTAGTAC
326 AAGAAATCGTAAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGGAGAAACAATTAGTAC
10384464 GTAAATAAGTT
391 GTAAATAAGTT
10384475 TTT
1 TTT
10384478 AATTTAAAGA
Statistics
Matches: 350, Mismatches: 50, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
401 33 0.09
402 315 0.90
403 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (401 bp):
TTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTGAC
AAGTTTGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTAATTAA
CAGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGACAAAATGATGCGATTTCTCGAGCATG
GAATGCTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTGTAAGGAACCGAAGTTATAA
AAGAAATCGTAAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGGAGAAACAATTAGTAC
GTAAATAAGTT
Found at i:10384685 original size:215 final size:216
Alignment explanation
Indices: 10384198--10384688 Score: 548
Period size: 215 Copynumber: 2.3 Consensus size: 216
10384188 TAAATAAGTT
* * * * * *
10384198 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTATT
* ** * *
10384263 AATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCG
66 AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
** * * ** * *
10384328 AGCATGGAATGTTTGGAAATTTGCTCAAAGGAGTTGATCGTCTTGAATACTGTAAGGAACCTAAG
131 AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATGGATCAACTTAAATACTGTAAGGAACCGAAG
* * * *
10384393 TTATAAAAGAACTTGTGAAAG
196 TAATAAAAGAAATCGTAAAAG
* * * * *
10384414 TTTAACGAA-TTCGAAAGTTCATCCAACAACCAAG-GAGATACAATTAGT-ACGTAAATAAGTTT
1 TTTGAC-AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAA-TACTCACGTAAATAAGTTA
* *
10384476 TTAATTTAA-AGAGCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTT
64 TTAA-TTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTC
* **
10384540 TCGAGCATGG-ATGTTTCAAAAAATTT-CT-AGAAGGAATGGATTAACTTAAATACT-TTTGGAA
128 TCGAGCATGGAATGTTT--AAAAATTTGCTCA-AAGGAATGGATCAACTTAAATACTGTAAGGAA
10384601 CCGAAGTAATAAAAGAAATCGTAAAAG
190 CCGAAGTAATAAAAGAAATCGTAAAAG
* * *
10384628 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGT
10384689 CTTTGACAAG
Statistics
Matches: 226, Mismatches: 40, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
213 2 0.01
214 66 0.29
215 119 0.53
216 37 0.16
217 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (216 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTATT
AATTAACAGACCAAAACTTGTTTACAAAATGACAAACTATTGAGACAAAATGATGGGATTTCTCG
AGCATGGAATGTTTAAAAATTTGCTCAAAGGAATGGATCAACTTAAATACTGTAAGGAACCGAAG
TAATAAAAGAAATCGTAAAAG
Found at i:10384745 original size:62 final size:61
Alignment explanation
Indices: 10384628--10384749 Score: 165
Period size: 62 Copynumber: 2.0 Consensus size: 61
10384618 ATCGTAAAAG
* * *
10384628 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTC
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAA-AAGTC
* * *
10384690 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGC-CACGTAAAAAGT
1 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAA-AAAGTACTCACGTAAAAAGT
10384750 TATTAATTCA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
61 4 0.08
62 45 0.85
63 4 0.08
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (61 bp):
TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAAAAGTACTCACGTAAAAAGTC
Found at i:10384977 original size:62 final size:62
Alignment explanation
Indices: 10384905--10385152 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10384895 ATCGTAAAAG
* * * *
10384905 TTTGAAAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10384967 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * * *
10385029 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10385091 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10385153 ATTTAATTAA
Statistics
Matches: 163, Mismatches: 23, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 163 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10385462 original size:894 final size:894
Alignment explanation
Indices: 10383734--10385927 Score: 3389
Period size: 894 Copynumber: 2.5 Consensus size: 894
10383724 TAAATAAGTT
*
10383734 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGGAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* * *
10383799 GACAAGTTTGAAAGTTCATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* *
10383864 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGACAAAATTATGCGATTTCTCGAGC
131 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGC
* * *
10383929 ATGGATTGCTCGAAAAATTGCTCGAAAGAATGGATCATCTTGAATGCTTTCAAGAACCGAAGTTA
196 ATGGAATGCTCGAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGTTA
* * *
10383994 TAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCCTCCAAGAACCAAGAGAGAAATAATTC
261 T-AAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAGCCAAGAGAGAAACAATTC
*
10384059 TTACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
325 TTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* *
10384124 CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
390 CGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGT
* * * * *
10384189 AAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAAC
455 AAATAAGTCTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAC
*
10384254 TAAGTTATTAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTTGACCAAATGATGT
520 TAAGTTATTAATTAACAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGT
* * *
10384319 GATTTCTCGAGCATGGAATGTTTGGAAATTTGCTCAAAGGAGTTGATCGTCTTGAATACTGTAAG
585 GATTTCTCGAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTAAG
*
10384384 GAACCTAAGTTATAAAAGAACTTGTGAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGG
650 GAACCTAAGTTATAAAAGAACTCGTGAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGG
* * *
10384449 AGATACAATTAGTACGTAAATAAGTTTTTAATTTAAAGAGCAAAACTTGTTTACAAAATGACAAA
715 AGATACAATTACTACGTAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAA
*
10384514 CTATTGAGACAAAATGATGGGATTTTTCGAGCATGGATGTTTCAAAAAATTTCTAGAAGGAATGG
780 CTATTGAGACAAAATGATGGCATTTTTCGAGCATGGATGTTTCAAAAAATTTCTAGAAGGAATGG
* *
10384579 ATTAACTTAAATAC-TTTTGGAACCGAAGTAATAAAAGAAATCGTAAAAG
845 ATTAACTTAAATACTTTTTGGAAACGAAGTAATAAAAGAAATCCTAAAAG
* * * *
10384628 TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGTGAAACAGTACTCATGTAAATAAGTCTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* *
10384693 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAAATTGC-CACGTAAA-AAGTTATTAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATT-CTCACGTAAATAAGTTTTTAA
* * *
10384756 TTCAAGGATCGAAACTTGTTTACAAAAAAACAAACTATTTAGACCAAATTATACGATTTCTCGAG
130 TTCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAG
* * * *
10384821 CATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTACAAGAACCGAAGCT
195 CATGGAATGCTCGAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGTT
* *
10384886 ATAAAGGAAATCGTAAAAGTTTGAAAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATT
260 ATAAA-GAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAGCCAAGAGAGAAACAATT
* * *
10384951 CTTACGTAAATAAGTTTTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTC
324 CTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
10385016 ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATG
389 ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACG
10385081 TAAATAAGTCTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
454 TAAATAAGTCTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
*
10385146 CTAAGTTATTTAATTAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGAT
519 CTAAGTTA-TTAATTAACAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGAT
*
10385211 GTGATTTCTCGAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTA
583 GTGATTTCTCGAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTA
* * * * *
10385276 AGGAACCTAGGTTATAAAAGAACTCGTGAAAGTTTAAC-AAGTTCGAAAGTTCGTCCGAGAACCT
648 AGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTAACGAA-TTCGAAAGTTCATCCAACAACCA
* ***
10385340 AGGAGATACAATT-CTCATGTAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTTTTAAATGA
712 AGGAGATACAATTACT-ACGTAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGA
* * *
10385404 CAAACTATTTAGACCAAATGATGGCA-TTTTCTGAGCATGGAATG-TTCGAAAAATTTCTAGAAG
776 CAAACTATTGAGACAAAATGATGGCATTTTTC-GAGCATGG-ATGTTTCAAAAAATTTCTAGAAG
* * * *
10385467 GAATGGATTATCTTGAATACTTTTTGGAAATGAAGTTATAAAAGAAATCCTAAAAG
839 GAATGGATTAACTTAAATACTTTTTGGAAACGAAGTAATAAAAGAAATCCTAAAAG
* * * * * *
10385523 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
* *
10385588 GACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
* * * *
10385653 TCAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGC
131 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGC
* *
10385718 ATGAAATGCTCGAAAAATTGCT-AGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTT
196 ATGGAATGCTCGAAAAATTGCTCA-AAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGTT
* *
10385782 ATATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCATCCAAGAAG-CAAGAGAGAAACAAT
260 ATA-AAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAG-AGCCAAGAGAGAAACAAT
* * ** * *
10385846 TCTTATGTAAATAAGTTTTTGACAAGCTCAAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCT
323 TCTTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
10385911 CACATAAATAAGTTTTT
388 CACGTAAATAAGTTTTT
10385928 AATTGAAAGA
Statistics
Matches: 1177, Mismatches: 110, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
892 3 0.00
893 381 0.32
894 400 0.34
895 139 0.12
896 250 0.21
897 4 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (894 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
TCAAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCTCGAGC
ATGGAATGCTCGAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGTTA
TAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAGCCAAGAGAGAAACAATTCT
TACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTA
AATAAGTCTTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACT
AAGTTATTAATTAACAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTG
ATTTCTCGAGCATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTGTAAGG
AACCTAAGTTATAAAAGAACTCGTGAAAGTTTAACGAATTCGAAAGTTCATCCAACAACCAAGGA
GATACAATTACTACGTAAATAACTTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAAC
TATTGAGACAAAATGATGGCATTTTTCGAGCATGGATGTTTCAAAAAATTTCTAGAAGGAATGGA
TTAACTTAAATACTTTTTGGAAACGAAGTAATAAAAGAAATCCTAAAAG
Found at i:10385525 original size:215 final size:216
Alignment explanation
Indices: 10385095--10385587 Score: 613
Period size: 215 Copynumber: 2.3 Consensus size: 216
10385085 TAAGTCTTTG
* *
10385095 ACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT-TTTAAT
* *
10385160 TAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTCGAGC
65 TAAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGC
* * * * *
10385225 ATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAGGTTA
130 ATGGAATGTTGAAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACATAAGTTA
* * *
10385290 TAAAAGAACTCGTGAAAGTTTA
195 TAAAAGAAATCCTAAAAGTTTA
* * * * *
10385312 ACAAGTTCGAAAGTTCGTCCGAGAACCTAG-GAGATACAATTCTCATGTAAATAACTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-T
* ***
10385376 TAA-AGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATG-GCATTT-TCTGA
65 TAAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGTG-ATTTCTC-GA
* **
10385438 GCATGGAATGTTCGAAAAATTT-CT-AGAAGGAATGGATTATCTTGAATACTTTTTGGAA-ATGA
128 GCATGGAATGTT-GAAAAATTTGCTCA-AAGGAATGGATCATCTTGAATACTTTAAGGAACAT-A
*
10385500 AGTTATAAAAGAAATCCTAAAAGTTTG
190 AGTTATAAAAGAAATCCTAAAAGTTTA
* * * *
10385527 ACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
10385588 GACAAGTTCG
Statistics
Matches: 235, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
214 5 0.02
215 143 0.61
216 60 0.26
217 27 0.11
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (216 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
AAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCA
TGGAATGTTGAAAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACATAAGTTAT
AAAAGAAATCCTAAAAGTTTA
Found at i:10385593 original size:62 final size:62
Alignment explanation
Indices: 10385523--10385649 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10385513 ATCCTAAAAG
* * * * *
10385523 TTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10385585 TTTGACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10385647 TTT
1 TTT
10385650 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10386135 original size:277 final size:275
Alignment explanation
Indices: 10385312--10386204 Score: 1279
Period size: 278 Copynumber: 3.2 Consensus size: 275
10385302 TGAAAGTTTA
* * * *
10385312 ACAAGTTCGAAAGTTCGTCCGAGAACCTAG-GAGATA-CAATTCTCATGTAAATAACTTTTTAAT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACCAATTCTCACGTAAATAAGTTTTTAAT
* *** *
10385375 TTAAAGACCAAAACTTGTTTTTTAAATGACAAACTATTTAGACCAAATGATGGCATTTTCTGAGC
65 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGG-ATTTTCCGAGC
10385440 ATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAAAT-GAAGTT
129 ATGGAATGTTCGAAAAATTTCTAGAA-GAATGGATTATCTTGAATACTTTTTGG-AATCGAAGTT
* *
10385504 ATAAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
192 AT-AAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATT
10385569 CTTACGTAAATAAGTTTTTG
256 CTTACGTAAATAAGTTTTTG
* *
10385589 ACAAGTTCGAAAGTTAGTCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
10385654 CAAGGACCAAAACTTGTTTACAAAAAGACAAACTATTTAGATCAAATTATGTGATTTCCCGAGCA
66 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-GATTTTCCGAGCA
* * * * ** *
10385719 TGAAATGCTCGAAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAACCGAAGTTAT
130 TGGAATGTTCGAAAAATTTCTAG-AAGAATGGATTATCTTGAATACTTTTTGGAATCGAAGTTAT
*
10385784 ATAAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCATCCAAGAAGCAAGAGAGAAACAATTCT
194 A-AAGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCT
*
10385849 TATGTAAATAAGTTTTTG
258 TACGTAAATAAGTTTTTG
* * * *
10385867 ACAAGCTCAAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
* * * *
10385932 GAAAGACCAAAACTGGTTTACAAAATGACAAACTAGTTAGACCAAACGATGGATTTTCCGAGCAT
66 CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGATTTTCCGAGCAT
* * *
10385997 GGAATGTTTGAAAAATTTCTAGAAGTAATGGATTACCTTGAATACTTTTTGGATTCGAAGTTATA
131 GGAATGTTCGAAAAATTTCTAGAAG-AATGGATTATCTTGAATACTTTTTGGAATCGAAGTTATA
* * *
10386062 ACAGAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTT
195 A-AGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTT
10386127 ACGTAAATAAGTTTTTG
259 ACGTAAATAAGTTTTTG
* * *
10386144 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTT
10386205 GAAAAGTTTG
Statistics
Matches: 546, Mismatches: 62, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
276 4 0.01
277 223 0.41
278 316 0.58
279 3 0.01
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (275 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACGTAAATAAGTTTTTAATT
CAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGATTTTCCGAGCAT
GGAATGTTCGAAAAATTTCTAGAAGAATGGATTATCTTGAATACTTTTTGGAATCGAAGTTATAA
AGAAATCATAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTTAC
GTAAATAAGTTTTTG
Found at i:10386175 original size:62 final size:62
Alignment explanation
Indices: 10386078--10386266 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
10386068 ATCGTAAAAG
* * *
10386078 TTTGACAAGTTCGAATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10386140 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** * *
10386202 TTTGAAAAGTTTGAAAGTTTATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10386264 TTT
1 TTT
10386267 AATTCAAGGA
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10386206 original size:339 final size:339
Alignment explanation
Indices: 10385801--10386576 Score: 1094
Period size: 339 Copynumber: 2.3 Consensus size: 339
10385791 ATCATAAAAG
* * * *
10385801 TTTGACAAGTTTGGATGTTCATCCAAGAAGCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
* ** *
10385866 GACAAGCTCAAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
* * *
10385931 TGAAAGACCAAAACTGGTTTACAAAATGACAAACTAG-TTAGACCAAACGATG-GATTTTCCGAG
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACT-GTTTAGA-CAAACGATGCGATTTCCCGAG
** * * * *** ** *
10385994 CATGGAATGTTTGAAAAATTTCT-AGAAGTAATGGATTACCTTGAATACTTTTTGGATTCGAAGT
194 CATGGAATGTTCAAAAAATTGCTCAAAAG-AATGGATCACCTTGAATACTTTCAAGAACCGAAGC
10386058 TATAACA-GAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAAG-CAAGAGAGAAACA
258 TATAA-AGGAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAG-AGCCAAGAGAGAAACA
10386121 ATTCTTACGTAAATAAGTT
321 ATTCTTACGTAAATAAGTT
* * *
10386140 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
* ** * *
10386205 GAAAAGTTTGAAAGTTTATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAGTTTTTAAT
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
* * * **
10386270 TCAAGGACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGACAAATTATGCGATTTCCCGAGCA
131 TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTGTTTAGACAAACGATGCGATTTCCCGAGCA
*
10386335 TGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAAGAACCGAAGCTAT
196 TGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCACCTTGAATACTTTCAAGAACCGAAGCTAT
*
10386400 AAAGGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCT
261 AAAGGAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCT
*
10386465 TACGTGAATAAGTT
326 TACGTAAATAAGTT
* * *
10386479 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
*
10386544 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAG
66 GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAG
10386577 TAAAACAGTA
Statistics
Matches: 383, Mismatches: 49, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
338 11 0.03
339 368 0.96
340 4 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.27
Consensus pattern (339 bp):
TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTT
GACAAGTTTGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAACTGGTTTACAAAAAGACAAACTGTTTAGACAAACGATGCGATTTCCCGAGCA
TGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCACCTTGAATACTTTCAAGAACCGAAGCTAT
AAAGGAAATCGTAAAAGTTTGACAAGTTCGAATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCT
TACGTAAATAAGTT
Found at i:10386487 original size:62 final size:62
Alignment explanation
Indices: 10386417--10386664 Score: 336
Period size: 62 Copynumber: 4.0 Consensus size: 62
10386407 ATCGTAAAAG
* * * *
10386417 TTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATTCTTACGTGAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * *
10386479 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * * *
10386541 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTA-AAACAGTACTCATGTAAATAAGTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG-AGAAACAATTCTCACGTAAATAAGTT
* * * *
10386603 TTTGACAAGTTCGAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10386665 ATTTTAATTA
Statistics
Matches: 162, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 160 0.99
63 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10386591 original size:401 final size:403
Alignment explanation
Indices: 10386078--10386884 Score: 1113
Period size: 401 Copynumber: 2.0 Consensus size: 403
10386068 ATCGTAAAAG
* * *
10386078 TTTGACAAGTTCGAATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
*
10386143 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTGAA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTCTTTGAA
* * * *
10386208 AAGTTTGAAAGTTTATCCAAGAACCAATAGAGAACCAATTCTCACGTAAATAAG-T-TTTTAATT
131 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTTTAATT
* * * *
10386271 CAAG-GACCGAAACTTGTTTACAAAAAGACAAACTGTTTAGA-CAAATTATGCGATTTCCCGAGC
196 -AAGAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
10386334 ATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTCAA-GAACCGAAGCT
260 ATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTT-AAGGAACCGAAGCT
* * * * *
10386398 ATAAAGGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAGCCAAGAGAGAAACAATT
324 ATAAAAGAAATCGTAAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGAAACAATT
* * *
10386463 CTTACGTGAATAAGTT
388 CTCACGTAAATAACTT
* *
10386479 TTTGACAAGTTCGGATGTTAGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTT
1 TTTGACAAGTTCGAATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
10386544 GACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGTA-AAACAGTACTCATGTAAATAAGTCTTTGA
66 GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAG-AGAAACAATACTCATGTAAATAAGTCTTTGA
* * *
10386608 CAAGTTCGAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTTAAT
130 AAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTTTAAT
* * * * **
10386673 TAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTTGAGC
195 TAAGAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGC
* * * * * * *
10386738 ATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTA
260 ATGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGCTA
* * * * * *
10386803 TAAAAGAACTCGTGAAAGTTTAACAAGTTCGAAAGTTCGTTCGAGAACCTAGGAGATACAATTCT
325 TAAAAGAAATCGTAAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCT
10386868 CACGTAAATAACTT
390 CACGTAAATAACTT
10386882 TTT
1 TTT
10386885 AATTTAAAGA
Statistics
Matches: 353, Mismatches: 47, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
401 166 0.47
402 5 0.01
403 67 0.19
404 115 0.33
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (403 bp):
TTTGACAAGTTCGAATGTTAGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCATGTAAATAAGTCTTTGAA
AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTATTTTAATT
AAGAGACCAAAACTTATTTACAAAAAGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
TGGAATGTTCAAAAAATTGCTCAAAAGAATGGATCATCTTGAATACTTTAAGGAACCGAAGCTAT
AAAAGAAATCGTAAAAGTTTAACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGAAACAATTCTC
ACGTAAATAACTT
Found at i:10387021 original size:215 final size:216
Alignment explanation
Indices: 10386607--10387100 Score: 559
Period size: 215 Copynumber: 2.3 Consensus size: 216
10386597 TAAGTCTTTG
* * * * *
10386607 ACAAGTTCGAAAGTTCATCCAGGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTATTTTAA
1 ACAAGTTCGAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA-CT-TTTTAA
* * * *
10386672 TTAAGAGTCCAAAACTTATTTACAAAATGACAAACTATTTTGACCAAATGATGTGATTTCTTGAG
64 TTAAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCGAG
* * * *
10386737 CATGGAATGTTTAGAAATTTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTT
129 CATGGAATGTTGAGAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAAACGAAGTT
* * *
10386802 ATAAAAGAACTCGTGAAAGTTTA
194 ATAAAAGAAATCCTAAAAGTTTA
* * *
10386825 ACAAGTTCGAAAGTTCGTTCGAGAACCTAG-GAGATACAATTCTCACGTAAATAACTTTTTAATT
1 ACAAGTTCGAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAA-T
* * ***
10386889 TAA-AGACCGAAACTTGTTTTTTTAAATGACAAACTATTTAGACCAAATGATGGGATTT-TCCGA
65 TAAGAGACCAAAACTT-ATTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCT-CGA
* **
10386952 GCATGGAATGTTCGA-AAATTT-CT-AGAAGGAATGGATTATCTTGAATACTTTTTGGAAACGAA
128 GCATGGAATGTT-GAGAAATTTGCTCA-AAGGAATGGATCATCTTGAATACTTTAAGGAAACGAA
*
10387014 GTTATAAAAGAAATCCTAAAAGTTTG
191 GTTATAAAAGAAATCCTAAAAGTTTA
* * * * * * * *
10387040 ACAAGTTTGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTTATGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTT
10387101 GACAAGTTCG
Statistics
Matches: 231, Mismatches: 39, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
214 1 0.00
215 95 0.41
216 87 0.38
217 23 0.10
218 25 0.11
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (216 bp):
ACAAGTTCGAAAGTTCGTTCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAACTTTTTAATT
AAGAGACCAAAACTTATTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTCTCGAGCA
TGGAATGTTGAGAAATTTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAAACGAAGTTAT
AAAAGAAATCCTAAAAGTTTA
Found at i:10387106 original size:62 final size:62
Alignment explanation
Indices: 10387036--10387162 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10387026 ATCCTAAAAG
* * * *
10387036 TTTGACAAGTTTGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTTATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
* * *
10387098 TTTGACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCATGTAAATAAGTT
1 TTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
10387160 TTT
1 TTT
10387163 AATTCAAGGA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (62 bp):
TTTGACAAGTTCGAAAGTTCGTCCAAAAACCAAGAGAGAAACAATTCTCATGTAAATAAGTT
Found at i:10387323 original size:280 final size:277
Alignment explanation
Indices: 10386825--10387441 Score: 891
Period size: 280 Copynumber: 2.2 Consensus size: 277
10386815 TGAAAGTTTA
* * * *
10386825 ACAAGTTCGAAAGTTCGTTCGAGAACCTAG-GAGATACAATTCTCACGTAAATAACTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGA-ACAATTCTCACGTAAATAAGTTTTTAATT
* * * * *
10386889 TAAAGACCGAAACTTGTTTTTTTAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGC
65 CAAAGACCAAAACTTGTTTTTTAAAAAGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGC
* * * **
10386954 ATGGAATGTTCGAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAAACGAAGTTAT
130 ATGGAATGTTCGAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTAT
*
10387019 AAAAGAAATCCTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCT
195 AAAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCT
* *
10387084 TATGTAAATAAGTTTTTG
260 CACGTAAATAAGTTTTTG
* *
10387102 ACAAGTTCGAAAGTTCGTCCAAGAATCAAGAGAGAACCAATTCTCATGTAAATAAGTTTTTAATT
1 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAA-CAATTCTCACGTAAATAAGTTTTTAATT
* *
10387167 CAAGGACCAAAACTT-TTTTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGA-TTTCTCG
65 CAAAGACCAAAACTTGTTTTTT--AAAAAGACAAACTATTTAGACCAAATGATGCGATTTTC-CG
* * *
10387230 AGCATGGAATGTTCGAGAAATTGCTCGAAAGAGTGGATCATCTTGAATACTTTCAGGAACCGAAG
127 AGCATGGAATGTTCGA-AAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAG
* *
10387295 TTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
191 TTATAAAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAAAACCAAGAGAGAAACAA
10387360 TTCTCACGTAAATAAGTTTTTG
256 TTCTCACGTAAATAAGTTTTTG
* *
10387382 ACAA-TTATGGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTT
1 ACAAGTT-CGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTT
10387442 TATAAGTTTG
Statistics
Matches: 303, Mismatches: 30, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
277 33 0.11
278 46 0.15
279 72 0.24
280 152 0.50
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (277 bp):
ACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTAATTC
AAAGACCAAAACTTGTTTTTTAAAAAGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCA
TGGAATGTTCGAAAATTGCTAGAAAGAATGGATCATCTTGAATACTTTCAGGAAACGAAGTTATA
AAAGAAATCCTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAAAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTG
Found at i:10387454 original size:61 final size:62
Alignment explanation
Indices: 10387320--10387565 Score: 374
Period size: 62 Copynumber: 4.0 Consensus size: 62
10387310 TAAAAGTTTG
* * *
10387320 ACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
1 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
10387382 ACAA-TTATGGAAGTTCGTCCAAGAACCAAGAGAG-AACAATTCTCACGTAAATAAGTTTTTT
1 ACAAGTT-TGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
* *
10387443 ATAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTT
1 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
* *
10387505 ACAAGTTTGAAAGTTCGTCCAAGAA-CAAG-GAGATATACAATTCTCAAGTAAATAAGTTTTT
1 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGA-A-ACAATTCTCACGTAAATAAGTTTTT
10387566 AATTTAAAGA
Statistics
Matches: 170, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
60 4 0.02
61 63 0.37
62 103 0.61
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (62 bp):
ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
Found at i:10387566 original size:123 final size:123
Alignment explanation
Indices: 10387322--10387565 Score: 384
Period size: 123 Copynumber: 2.0 Consensus size: 123
10387312 AAAGTTTGAC
*
10387322 AAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAT
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAT
* *
10387387 TATGGAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCACGTAAATAAGTTTTTTAT
66 TATGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCAAGTAAATAAGTTTTTTAT
* * *
10387445 AAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTTACAAG
1 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAA-
*
10387510 TT-TGAAAGTTCGTCCAAGAA-CAAGGAGATATACAATTCTCAAGTAAATAAGTTTTT
65 TTATGAAAGTTCGTCCAAGAACCAA-GAGAGA-ACAATTCTCAAGTAAATAAGTTTTT
10387566 AATTTAAAGA
Statistics
Matches: 111, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
122 3 0.03
123 82 0.74
124 26 0.23
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (123 bp):
AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAT
TATGAAAGTTCGTCCAAGAACCAAGAGAGAACAATTCTCAAGTAAATAAGTTTTTTAT
Found at i:10387763 original size:62 final size:62
Alignment explanation
Indices: 10387678--10387863 Score: 291
Period size: 62 Copynumber: 3.0 Consensus size: 62
10387668 ATCGTAAAAG
* * * *
10387678 TTTGACAAGTTCGGATGCTCGTCCAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10387740 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * * *
10387802 TTTGACAAGTTTAGAAGTTCGTCCAAGAACTAAGAGAGAAATAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10387864 ATGATTTCTC
Statistics
Matches: 114, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10388294 original size:62 final size:62
Alignment explanation
Indices: 10388174--10388545 Score: 408
Period size: 62 Copynumber: 6.0 Consensus size: 62
10388164 ATCGTAAAAG
* * * * * *
10388174 TTTGACAAGTTCGGATGTTCGT-CAGAGAAGCAAGAGAGGAACAATTCTTACATAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * * * * * ** *
10388236 TTTGACAAGTTCAGAAGTTTGTCCAAGAACCAATAGTGAAACAGTACTCATGGCAATAAGTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * *
10388298 TTTGACAAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTTGCAC--AAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATAC-T-CACGTAAATAAGTT
* * * *
10388360 TTTGACAAGTTCGGATGTTAGTCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * * *
10388422 TTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
* * * * * *
10388484 TTTGACAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
10388546 ATTAATTAAC
Statistics
Matches: 263, Mismatches: 42, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
60 3 0.01
61 1 0.00
62 254 0.97
63 3 0.01
64 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (62 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTT
Found at i:10388490 original size:186 final size:186
Alignment explanation
Indices: 10388174--10388531 Score: 520
Period size: 186 Copynumber: 1.9 Consensus size: 186
10388164 ATCGTAAAAG
* * *
10388174 TTTGACAAGTTCGGATGTTCGTCAGAGAAGCAAGAGAGGAACAATTCTTACATAAATAAGTTTTT
1 TTTGACAAGTTCGGATGTTAGTCAGAGAAGCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * *
10388239 GACAAGTTCAGAAGTTTGTCCAAGAACCAATAGTGAAACAGTACTCATGGCAATAAGTCTTTGAC
66 GACAAGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCACGGAAATAAGTCTTTGAC
*
10388304 AAGTTCGAAAGTTCGTCCAAGAACGAAGAGAGAAACAATTCTTGCACAAATAAGTT
131 AAGTTCGAAAGTTCATCCAAGAACGAAGAGAGAAACAATTCTTGCACAAATAAGTT
*
10388360 TTTGACAAGTTCGGATGTTAGTCCA-AGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
1 TTTGACAAGTTCGGATGTTAGT-CAGAGAAGCAAGAGAGAAACAATTCTCACATAAATAAGTTTT
* ** * * *
10388424 TGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGA
65 TGACAAGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCACGGAAATAAGTCTTTGA
* * * *
10388489 CAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAGCAATTCT
130 CAAGTTCGAAAGTTCATCCAAGAACGAAGAGAGAAACAATTCT
10388532 CACGTAACTA
Statistics
Matches: 151, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
186 149 0.99
187 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (186 bp):
TTTGACAAGTTCGGATGTTAGTCAGAGAAGCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
GACAAGTTCAGAAGTTTGTCCAAGAACCAAGAGAGAAACAATACTCACGGAAATAAGTCTTTGAC
AAGTTCGAAAGTTCATCCAAGAACGAAGAGAGAAACAATTCTTGCACAAATAAGTT
Found at i:10388835 original size:62 final size:62
Alignment explanation
Indices: 10388738--10388921 Score: 300
Period size: 62 Copynumber: 3.0 Consensus size: 62
10388728 ATCATAAAAG
* * *
10388738 TTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
*
10388800 TTTGACATGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-T
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
* *
10388861 TTTGACAAGTTT-GAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTT
1 TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10388922 ATTAATTAAC
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
60 45 0.39
61 13 0.11
62 56 0.49
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10389161 original size:61 final size:61
Alignment explanation
Indices: 10389075--10389243 Score: 207
Period size: 61 Copynumber: 2.7 Consensus size: 61
10389065 ATCGTAAAAG
* * *
10389075 TTTGACAAGTTCGGAAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTTACGT-AATAAGTT-
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAA-TTC
* * * * *
10389136 TTTGACAAGTTCAGATGTTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTCAATAATTC
1 TTTGACAAGTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAATTC
*
10389198 TTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAACCAATT
1 TTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT
10389244 GCCACGTTAA
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
61 47 0.52
62 44 0.48
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (61 bp):
TTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAATTC
Found at i:10389424 original size:339 final size:335
Alignment explanation
Indices: 10388620--10389813 Score: 1476
Period size: 339 Copynumber: 3.5 Consensus size: 335
10388610 TCAAGCATGG
* * * * * *
10388620 AACTATTTAGACAAAATTATACGATTTCCCCGAGCATGGATTGCTCGAAAAATTACTCGAAAGAA
1 AACTATTTAGACCAAATGATGCGATTT-CCCGAGCATGGAATGTTC-AAAAATTGCTCGAAAGAA
* * *
10388685 TGGATCATCTCGAATGCTTTCAGGAACCGAAGTTATAAAAGAAATCATAAAAGTTTGACAAGTTC
64 TGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
* * * * *
10388750 GGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACATGTTTGGA
129 GGAAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAG-TTGGA
10388815 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGACAAGTTTGAAGTTC
193 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGACAAGTTTGAAGTTC
*
10388880 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTG
258 GTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGT-CGAAACTTG
10388945 TTTACAAAATGACA
322 TTTACAAAATGACA
* * * * * * *
10388959 AACTATTTAGACCAAATGATGGGATTTTCCGAGTATGGAATGTTCGAAAATTTCTAGAAGGAATG
1 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAAGAATG
* ** * *
10389024 GATTATCTTGAATACTTTTGGGAACCGAACTCATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
66 GATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
* * *
10389089 AAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTTACGT-AATAAGTTTTTGACAAGTTCAGATG
131 AAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTT-GGAAG
* * * * * * *
10389153 TTCGTCCAAGAACCAAGAGTGAAACAGTACTCATGTCAATAATTCTTTGACAAGTTCGAAAGTTC
195 TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT-TTTGACAAGTTTG-AAGTTC
* * * * *
10389218 GTCCAAGAACCAAGAGAGAACCAATTGC-CACGTTAA-AAAGTTTTTAATTCAA-GGATCGAAAC
258 GTCCAAGAACTAAGAGAGAAACAATT-CTCACG-TAACTAAGTTATTAATT-AACAG-TCGAAAC
* * *
10389280 TTATTTGCAAAAAGACA
319 TTGTTTACAAAATGACA
*
10389297 AACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGAATGTTTCAAAAATTGCTCGAAAGAAT
1 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG-TTCAAAAATTGCTCGAAAGAAT
*
10389362 GGATCATCTTGAATGCTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
65 GGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCG
* *
10389427 GATGTT-AGTCCAAGAAGCAAGAGAGAGAACAATTCTCACGT-AATAAGTTTTTCGGCAA-TATG
130 GAAGTTCA-TCCAAGAAGCAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTT-GACAAGT-TG
*
10389489 GAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGTTTTGACAAGTTTGGAA
191 GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA-GTTTTGACAAGTTT-GAA
*
10389554 GTTCGTCCAAGAACTAAGAGAGAAGCAATTCTCACGTAACTAAGTTATTAATTAACAGTCGAAAA
254 GTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCG-AAA
*
10389619 CTTGTTTAC-AAATGGCA
318 CTTGTTTACAAAATGACA
* * * * * * ** **
10389636 AACTATTTTGACTAAATGATGTGATTTCTCGAGTATGGAATTTTTGGAAGTTTGCTC-AAAGGAA
1 AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA-TGTTCAAAAATTGCTCGAAA-GAA
* * * * *
10389700 TGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAG-TTGACAAGTTC
64 TGGATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTC
* ** *
10389764 GAAAGTTCATCCAAGATTCAAG-GAGATACAATTCTCACGTAAATAA-TTTT
129 GGAAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
10389814 AATTTAAAGA
Statistics
Matches: 731, Mismatches: 102, Indels: 47
0.83 0.12 0.05
Matches are distributed among these distances:
335 2 0.00
336 74 0.10
337 128 0.18
338 148 0.20
339 240 0.33
340 132 0.18
341 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (335 bp):
AACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAAAAATTGCTCGAAAGAATG
GATCATCTTGAATACTTTCAGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGG
AAGTTCATCCAAGAAGCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGACAAGTTGGAAGT
TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGACAAGTTTGAAGTTCGTC
CAAGAACTAAGAGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCGAAACTTGTTTA
CAAAATGACA
Found at i:10389504 original size:62 final size:60
Alignment explanation
Indices: 10389414--10389599 Score: 223
Period size: 62 Copynumber: 3.0 Consensus size: 60
10389404 ATCGTAAAAG
* *
10389414 TTTGACAAGT-TCGGATGTTAGTCCAAGAAGCAAGAGAGAGAACAATTCTCACGTAATAAGTT
1 TTTGACAAGTAT-GGAAGTTCGTCCAAGAA-CAAGAGAGA-AACAATTCTCACGTAATAAGTT
* * *
10389476 TTTCGGCAA-TATGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGGT
1 TTT-GACAAGTATGGAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGT-AATAAGTT
* *
10389538 TTTGACAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAGCAATTCTCACGTAACTAAGTT
1 TTTGACAAGTATGGAAGTTCGTCCAAGAAC-AAGAGAGAAACAATTCTCACGTAA-TAAGTT
10389600 ATTAATTAAC
Statistics
Matches: 108, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
61 21 0.19
62 82 0.76
63 5 0.05
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.26
Consensus pattern (60 bp):
TTTGACAAGTATGGAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAATAAGTT
Found at i:10390054 original size:61 final size:61
Alignment explanation
Indices: 10389964--10390211 Score: 261
Period size: 62 Copynumber: 4.0 Consensus size: 61
10389954 ATCGTAAAAG
* *
10389964 TTTGACAAGTTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTT
1 TTTGACAAGTTT-GAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
* * ** * *
10390027 TTTGACAAGTTTGGATGTTCGT-CAAGAAGCAAGAGAGAAACTTCTTCTTACATAAATAAGTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAA-CAAGAGAGAAAC-AATTCTCACGTAAATAAGTT
* * * * * *
10390089 TTTGACAAGTTTGGAAGTTCG--CAAGAACTAGAGTGAAACAATACTCATGT-AATAAGTC
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
* ** *
10390147 TTTGAAAAGTTTGAAAGTTTATCCAAGAATCAAGAGAGAACCAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGAAAGTTCGTCCAAGAA-CAAGAGAGAAACAATTCTCACGTAAATAAGTT
10390209 TTT
1 TTT
10390212 AATTTAAGGG
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
58 24 0.15
59 5 0.03
60 16 0.10
61 42 0.27
62 56 0.36
63 12 0.08
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (61 bp):
TTTGACAAGTTTGAAAGTTCGTCCAAGAACAAGAGAGAAACAATTCTCACGTAAATAAGTT
Found at i:10390181 original size:121 final size:124
Alignment explanation
Indices: 10389964--10390186 Score: 283
Period size: 121 Copynumber: 1.8 Consensus size: 124
10389954 ATCGTAAAAG
* * *
10389964 TTTGACAAGTTTCGAATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTT
1 TTTGACAAGTTTCGAATGTTCG-CCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTT
* * * *
10390029 TGACAAGTTTGGATGTTCGTCAAGAAGCAAGAGAGAAACTTCTTCTTACATAAATAAGTT
65 TGAAAAGTTTGAAAGTTCATCAAGAAGCAAGAGAGAAACTTCTTCTTACATAAATAAGTT
* * * *
10390089 TTTGACAAGTTTGGAA-GTTCG-CAAGAA-CTAGAGTGAAACAATACTCATGT-AATAAGTCTTT
1 TTTGACAAGTTTCGAATGTTCGCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTT
* *
10390150 GAAAAGTTTGAAAGTTTATCCAAGAATCAAGAGAGAA
66 GAAAAGTTTGAAAGTTCAT-CAAGAAGCAAGAGAGAA
10390187 CCAATTCTCA
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
120 24 0.29
121 34 0.40
122 6 0.07
124 5 0.06
125 15 0.18
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (124 bp):
TTTGACAAGTTTCGAATGTTCGCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTCTTT
GAAAAGTTTGAAAGTTCATCAAGAAGCAAGAGAGAAACTTCTTCTTACATAAATAAGTT
Found at i:10390435 original size:60 final size:60
Alignment explanation
Indices: 10390367--10390549 Score: 224
Period size: 60 Copynumber: 3.0 Consensus size: 60
10390357 TAATAGTTTG
* ** *
10390367 ACAAGTTTGGATGTTCACCCCAGAACCAAAGGGAAAC-ATTCTCACGTAAATAAGTTTTTT
1 ACAAGTTTGGAAGTTCGTCCAAGAACC-AAGGGAAACAATTCTCACGTAAATAAGTTTTTT
* * *
10390427 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGACAATTCTCACGTAACTAAGTTTTTTT
1 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGGGAAACAATTCTCACGTAAATAAG-TTTTTT
* * *
10390488 ACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATATACAATTCTCACGTAAATAAATTTTT
1 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGG-GA-A-ACAATTCTCACGTAAATAAGTTTTT
10390550 AATTTAAAGA
Statistics
Matches: 105, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
59 7 0.07
60 39 0.37
61 34 0.32
62 2 0.02
63 5 0.05
64 18 0.17
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (60 bp):
ACAAGTTTGGAAGTTCGTCCAAGAACCAAGGGAAACAATTCTCACGTAAATAAGTTTTTT
Found at i:10390514 original size:61 final size:63
Alignment explanation
Indices: 10390388--10390549 Score: 219
Period size: 61 Copynumber: 2.6 Consensus size: 63
10390378 TGTTCACCCC
* *
10390388 AGAACCAAAGG-GAA-AC-ATTCTCACGTAAATAAG-TTTTTTACAAGTTTGGAAGTTCGTCCA
1 AGAACC-AAGGAGAAGACAATTCTCACGTAAATAAGTTTTTTTACAAGTTCGAAAGTTCGTCCA
*
10390448 AGAACCAA-GAG-AGACAATTCTCACGTAACTAAGTTTTTTTACAAGTTCGAAAGTTCGTCCA
1 AGAACCAAGGAGAAGACAATTCTCACGTAAATAAGTTTTTTTACAAGTTCGAAAGTTCGTCCA
* *
10390509 AGAACCAAGGAGATATACAATTCTCACGTAAATAAATTTTT
1 AGAACCAAGGAGA-AGACAATTCTCACGTAAATAAGTTTTT
10390550 AATTTAAAGA
Statistics
Matches: 89, Mismatches: 6, Indels: 10
0.85 0.06 0.10
Matches are distributed among these distances:
58 2 0.02
59 5 0.06
60 22 0.25
61 33 0.37
62 3 0.03
64 24 0.27
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.28
Consensus pattern (63 bp):
AGAACCAAGGAGAAGACAATTCTCACGTAAATAAGTTTTTTTACAAGTTCGAAAGTTCGTCCA
Found at i:10390731 original size:61 final size:63
Alignment explanation
Indices: 10390662--10390825 Score: 233
Period size: 61 Copynumber: 2.6 Consensus size: 63
10390652 ATCGTAAAAG
* * *
10390662 TTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAAGT-AATAAG-TT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTT
* *
10390723 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACAATACTCACGTAAATAAGTTT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTT
* * **
10390786 TTTAACTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGAA
1 TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA
10390826 TATTCTCTAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 48 0.53
62 6 0.07
63 37 0.41
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (63 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAAATAAGTTT
Found at i:10390805 original size:63 final size:61
Alignment explanation
Indices: 10390678--10390825 Score: 206
Period size: 63 Copynumber: 2.4 Consensus size: 61
10390668 AAGTTCGGAT
* * * **
10390678 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAAGTAATAAGTTTTTGACAAGTTCGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAATAAGTTTTTAACAAGTTCAAAA
* * *
10390739 GTTCGTCCAAGAACCAGGAGAGAAACAATACTCACGTAAATAAGTTTTTTAACTAGTTCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGT-AATAAG-TTTTTAACAAGTTCAAAA
10390802 GTTCGTCCAAGAACCAAGAGAGAA
1 GTTCGTCCAAGAACCAAGAGAGAA
10390826 TATTCTCTAC
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
61 33 0.43
62 6 0.08
63 37 0.49
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (61 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCAAGTAATAAGTTTTTAACAAGTTCAAAA
Found at i:10390864 original size:63 final size:63
Alignment explanation
Indices: 10390678--10390864 Score: 157
Period size: 63 Copynumber: 3.0 Consensus size: 63
10390668 AAGTTCGGAT
* * * * * * * * **
10390678 GTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAAGT-AATAAGTT-TTTGACAAGTTCGGAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTAATTAACTACTCCAAAA
* ** * *
10390739 GTTCGTCCAAGAACCAGGAGAGAAACAATACTCACGTAAATAAGTTTTTTAACTAGTTCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTAATTAACTACTCCAAAA
* * * *
10390802 GTTCGTCCAAGAACCAAGAGAG-AA-TATTCTCTACGTAACTAAGTTAATTAATTAACTCCAAAA
1 GTTCGTCCAAGAACCAAGAGAGAAACAATACTC-ACGTAAATAAGTTAATTAACT-ACTCCAAAA
10390865 CTTGTTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
61 38 0.36
62 27 0.26
63 40 0.38
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (63 bp):
GTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAATAAGTTAATTAACTACTCCAAAA
Found at i:10390887 original size:299 final size:296
Alignment explanation
Indices: 10390339--10391478 Score: 1089
Period size: 299 Copynumber: 3.9 Consensus size: 296
10390329 TTCAGAAACT
* * * *
10390339 GAAGTTATAAAGAAATCATAATAGTTTGACAAGTTTGGATGTTCACCCCAGAACCAAAGGGAAAC
1 GAAGTTATAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCACCCAAGAACCAAAGAGAAAC
* * * * *
10390404 ATTCTCACGTAAATAAGTTTTTTACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGACAATTCT
66 ATTCTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATACT
* * *
10390469 CACGTAACTAAGTTTTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATATACAATTCTC
131 CACGTAAATAAGTTTTTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGGAGATAT--AATTCTC
* *
10390534 ACGTAAATAAATTTTTAATTTAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
194 ACGTAAATAAATTATTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
10390599 ATGATGG-GATTTTTCAAAATGACAAGCTTTTTGGAACC
259 ATGA-GGTGATTTTTCAAAATGACAAGCTTTTTGGAACC
* **
10390637 GAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
1 GAAGTTAT-AAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCACCCAAGAACCAA-AGAGAA
*
10390702 ACAATTCTTAAGT-AATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAGGAGAGAAACA
64 AC-ATTCTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA--AGAGAAACA
*
10390766 ATACTCACGTAAATAAGTTTTTTAACTAGTTCAAAAGTTCGTCCAAGAACCAAGAGAGA-AT-AT
126 ATACTCACGTAAATAAGTTTTTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAG-GAGATATAAT
* * * * *
10390829 TCTCTACGTAACTAAGTTAATTAA-TT-AACTCCAAAACTTGTTTACAAAATGGCAAACTATTTT
190 TCTC-ACGTAAATAAATT-ATTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTTA
* ** * * ***
10390892 GACCAAATGAGGTGATTTCTCGAGCATG-GAA--TGTTTGGATTT
253 GACCAAATGAGGTGATTTTTC-AAAATGACAAGCTTTTTGGAACC
* * * * * * * *
10390934 G--CTCA-AAGGAGGATC------GTCTTG--AA-TAC---T-TT-A---AGGAACCTAAGTTAT
1 GAAGTTATAAAGA-AATCATAAAAGT-TTGACAAGTTCGGATGTTCACCCAAGAACCAAAG--AG
** * * *
10390979 AAA-AGAACTC--GT-GA-AAG--TTTGACAAGTTTGAAAGTTCGTCCA-GAACCAAGAGAGAAA
62 AAACA-TTCTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACC-A-AGAGAAA
* * *
10391036 CAATTCTCACGTAACTAAGTTTTTT-ACAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATATAC
124 CAATACTCACGTAAATAAGTTTTTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGGAGATAT--
* * *
10391100 AATTCTCACGTAAATAAGTTTTTAATTTAAAGACCAAAAC-TGTTTACAAAATGACAAACTATTT
187 AATTCTCACGTAAATAAATTATTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTT
*
10391164 AGACCAAATGATGG-GATTTTTCAAAATGACAAACTTTTT-GAACC
252 AGACCAAATGA-GGTGATTTTTCAAAATGACAAGCTTTTTGGAACC
** **
10391208 GAAGTTATAAAGAAATTGTAAAAGTTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAA
1 GAAGTTATAAAGAAATCATAAAAG-TTTGACAAGTTCGGATGTTCACCCAAGAACCAA-AGAGAA
* *
10391273 ACAATTCTTAAGTAAATAAGTTTTTGACAAGTTCAGAAG-TCGTCCAAGAACCAGGAGAGAAACA
64 AC-ATTCTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA--AGAGAAACA
* * *
10391337 ATACTCACGT-AATAAG--TTTTAACTAGTTC-AAAGTTCGTCCAAGAACCAAGAGAGAAACAAT
126 ATACTCACGTAAATAAGTTTTTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAG-GAGATATAAT
* * * *
10391398 TCTCACGTAACTAAGTTATTAA-TT-AACAGTCCAAAACTTGTTTACAAAATGGCAAACTATTTT
190 TCTCACGTAAATAAATTATTAATTTAAACA--CCAAAACTTGTTTACAAAATGACAAACTATTTA
10391461 GACCAAATGAGGTGATTT
253 GACCAAATGAGGTGATTT
10391479 CTCGAGCATG
Statistics
Matches: 686, Mismatches: 92, Indels: 130
0.76 0.10 0.14
Matches are distributed among these distances:
270 4 0.01
271 30 0.04
272 44 0.06
273 80 0.12
274 20 0.03
275 7 0.01
276 7 0.01
277 7 0.01
278 9 0.01
279 4 0.01
282 6 0.01
283 2 0.00
284 2 0.00
285 2 0.00
286 2 0.00
287 2 0.00
288 3 0.00
289 5 0.01
292 4 0.01
293 16 0.02
294 8 0.01
295 36 0.05
296 64 0.09
297 23 0.03
298 23 0.03
299 139 0.20
300 62 0.09
301 12 0.02
302 59 0.09
303 4 0.01
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (296 bp):
GAAGTTATAAAGAAATCATAAAAGTTTGACAAGTTCGGATGTTCACCCAAGAACCAAAGAGAAAC
ATTCTCAAGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAAACAATACT
CACGTAAATAAGTTTTTTAACAAGTTCAAAAGTTCGTCCAAGAACCAAGGAGATATAATTCTCAC
GTAAATAAATTATTAATTTAAACACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAAT
GAGGTGATTTTTCAAAATGACAAGCTTTTTGGAACC
Found at i:10391118 original size:63 final size:61
Alignment explanation
Indices: 10391000--10391122 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 61
10390990 TGAAAGTTTG
* *
10391000 ACAAGTTTGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTT
1 ACAAGTTCGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
10391061 ACAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGATATACAATTCTCACGTAAATAAGTTTTT
1 ACAAGTTCGAAAGTTCGTCC-AGAACCAAGAGAGA-A-ACAATTCTCACGTAAATAAGTTTTT
10391123 AATTTAAAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
61 23 0.40
62 10 0.18
63 24 0.42
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (61 bp):
ACAAGTTCGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTT
Found at i:10391317 original size:61 final size:62
Alignment explanation
Indices: 10391232--10391414 Score: 257
Period size: 59 Copynumber: 3.0 Consensus size: 62
10391222 ATTGTAAAAG
* * * *
10391232 TTTTGACAAGTTCGGATGTTCGTCCAAGAACCAAGAGAGAAACAATTCTTAAGTAAATAAGT
1 TTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* *
10391294 TTTTGACAAGTTCAGAAG-TCGTCCAAGAACCAGGAGAGAAACAATACTCACGT-AATAAG-
1 TTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
* * *
10391353 TTTTAACTAGTTCA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGT
1 TTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
10391414 T
1 T
10391415 ATTAATTAAC
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
58 3 0.03
59 45 0.42
60 11 0.10
61 32 0.30
62 16 0.15
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.25
Consensus pattern (62 bp):
TTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGT
Found at i:10391539 original size:572 final size:571
Alignment explanation
Indices: 10390427--10392243 Score: 2174
Period size: 572 Copynumber: 3.2 Consensus size: 571
10390417 TAAGTTTTTT
* *
10390427 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAG--ACAATTCTCACGTAACTAAGTTTTTTTAC
1 ACAAGTTTGAAAGTTCGTCC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTTAC
*
10390490 AAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATATACAATTCTCACGTAAATAAATTTTTAATTT
64 AAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATA-ACAATTCTCACGTAAATAAGTTTTTAATTT
10390555 AAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCAAAATG
128 AAAGACCAAAAC-TGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCAAAATG
*
10390620 ACAAGCTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTC
192 ACAAACTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTC
10390685 CAAGAACCAAGAGAGAAACAATTCTTAAGTAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAG
257 CAAGAACCAAGAGAGAAACAATTCTTAAGTAATAAGTTTTTGACAAGTTCGGAAG-TCGTCCAAG
10390750 AACCAGGAGAGAAACAATACTCACGTAAATAAGTTTTTTAACTAGTTCAAAAGTTCGTCCAAGAA
321 AACCAGGAGAGAAACAATACTCACGTAAATAAG--TTTTAACTAGTTC-AAAGTTCGTCCAAGAA
*
10390815 CCAAGAGAGAA-TATTCTCTACGTAACTAAGTTAATTAATTAAC--TCCAAAACTTGTTTACAAA
383 CCAAGAGAGAACAATTCTC-ACGTAACTAAGTT-ATTAATTAACAGTCCAAAACTTGTTTACAAA
10390877 ATGGCAAACTATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATGTTTGG-ATTTGCTCAAA
446 ATGGCAAACTATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATGTTTGGAATTTGCTCAAA
10390941 GG-A-GGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTG
511 GGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTG
*
10391000 ACAAGTTTGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTTACAA
1 ACAAGTTTGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTACAA
10391065 GTTCGAAAGTTCGTCCAAGAACCAAGGAGATATACAATTCTCACGTAAATAAGTTTTTAATTTAA
66 GTTCGAAAGTTCGTCCAAGAACCAAGGAGATA-ACAATTCTCACGTAAATAAGTTTTTAATTTAA
10391130 AGACCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCAAAATGACA
130 AGACCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCAAAATGACA
*
10391195 AACTTTTT-GAACCGAAGTTAT-AAAGAAATTGTAAAAGTTTTGACAAGTTCGGATGTTCGTCCA
195 AACTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAG-TTTGACAAGTTCGGATGTTCGTCCA
*
10391258 AGAACCAAGAGAGAAACAATTCTTAAGTAAATAAGTTTTTGACAAGTTCAGAAGTCGTCCAAGAA
259 AGAACCAAGAGAGAAACAATTCTTAAGT-AATAAGTTTTTGACAAGTTCGGAAGTCGTCCAAGAA
10391323 CCAGGAGAGAAACAATACTCACGT-AATAAGTTTTAACTAGTTCAAAGTTCGTCCAAGAACCAAG
323 CCAGGAGAGAAACAATACTCACGTAAATAAGTTTTAACTAGTTCAAAGTTCGTCCAAGAACCAAG
10391387 AGAGAAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTACAAAATGGCA
388 AGAG-AACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTACAAAATGGCA
10391452 AACTATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATGTTTGGAATTTGCTCAAAGGAATG
452 AACTATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATGTTTGGAATTTGCTCAAAGGAATG
*
10391517 GATTGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTG
517 GATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTG
* * * *
10391572 ACAAGTTTGAAAGTTCATCCA-ACACCAAG-GAGATACAATTCTCACATAAATAACTTTAATTTA
1 ACAAGTTTGAAAGTTCGTCCAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT--TTTA
** * * ** * * * * * * * *** *
10391635 -AAGACCAAAACTT-GT-TTACAA--AA--TGACAACTATT-TAGAC-CAAAT--GATCGGACTT
63 CAAGTTCGAAAGTTCGTCCAAGAACCAAGGAGATAACAATTCT-CACGTAAATAAGTTTTTAATT
** * * * *
10391689 T-TCGAGCATGGAA-TG-TT-----A-GA-AAA--ATTT---CTAGAAGGCAT-GGA---TT-AA
127 TAAAGACCA--AAACTGTTTACAAAATGACAAACTATTTAGACCA-AATG-ATGGGATTTTTCAA
** * *
10391734 CTTGA-ATACTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTT
188 AATGACAAACTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTT
* * * *
10391798 CGTCTAAGAAGCAAGAGA-AAACAATTCTTACGTAATAAGTTTTTGACAAGTTCGGAAGTTGATC
253 CGTCCAAGAACCAAGAGAGAAACAATTCTTAAGTAATAAGTTTTTGACAAGTTCGGAAGTCG-TC
* * * * * * * * * *
10391862 CAAGAACCAAGAGTG-AATAGTACTCATGTAAATTAGTCTTTGACAAGTTCGAAGTTTGTCCAAG
317 CAAGAACCAGGAGAGAAACAATACTCACGTAAATAAGT-TTTAACTAGTTCAAAGTTCGTCCAAG
* * * *
10391926 AACC-AGAGAGAACGAATTGC-CACGTAAATAAGTTTTTAATT--CGAGGACCGAAACTTGTTTA
381 AACCAAGAGAGAAC-AATT-CTCACGTAACTAAGTTATTAATTAAC-A-GTCCAAAACTTGTTTA
* * * * * * * * **** *
10391987 CAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCCCGAGCATGGATTGCTCAAAAAATTGC
442 CAAAATGGCAAACTATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATG-TTTGGAATTTGC
* * * * * * * * *
10392052 TCGAAA-GAATAGATCATCTCGAATGCTTTCAGGAACCAAAGTTATAAATGAAATCGTAAAAAGT
506 TC-AAAGGAATGGATCGTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGT-GAAAGT
10392116 TTG
569 TTG
* * *
10392119 ACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTGTGA
1 ACAAGTTTGAAAGTTCGT-CCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT-T-A
* * *
10392184 CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGA-AATAATTCTCACGTAAATAAGTTTTT
63 CAAGTTCGAAAGTTCGTCCAAGAACCAAG-GAGATAACAATTCTCACGTAAATAAGTTTTT
10392244 TTGACAAGTT
Statistics
Matches: 1089, Mismatches: 107, Indels: 110
0.83 0.08 0.08
Matches are distributed among these distances:
543 1 0.00
544 41 0.04
545 130 0.12
546 130 0.12
547 44 0.04
548 10 0.01
549 29 0.03
550 13 0.01
551 4 0.00
552 7 0.01
554 5 0.00
555 2 0.00
556 8 0.01
557 7 0.01
559 2 0.00
561 6 0.01
562 8 0.01
563 2 0.00
564 5 0.00
565 7 0.01
566 3 0.00
567 35 0.03
568 30 0.03
569 78 0.07
570 37 0.03
571 129 0.12
572 189 0.17
573 107 0.10
574 20 0.02
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (571 bp):
ACAAGTTTGAAAGTTCGTCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTTACAA
GTTCGAAAGTTCGTCCAAGAACCAAGGAGATAACAATTCTCACGTAAATAAGTTTTTAATTTAAA
GACCAAAACTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTTCAAAATGACAA
ACTTTTTGGAACCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGTCCAAG
AACCAAGAGAGAAACAATTCTTAAGTAATAAGTTTTTGACAAGTTCGGAAGTCGTCCAAGAACCA
GGAGAGAAACAATACTCACGTAAATAAGTTTTAACTAGTTCAAAGTTCGTCCAAGAACCAAGAGA
GAACAATTCTCACGTAACTAAGTTATTAATTAACAGTCCAAAACTTGTTTACAAAATGGCAAACT
ATTTTGACCAAATGAGGTGATTTCTCGAGCATGGAATGTTTGGAATTTGCTCAAAGGAATGGATC
GTCTTGAATACTTTAAGGAACCTAAGTTATAAAAGAACTCGTGAAAGTTTG
Found at i:10392202 original size:64 final size:64
Alignment explanation
Indices: 10392117--10392300 Score: 268
Period size: 64 Copynumber: 2.9 Consensus size: 64
10392107 GTAAAAAGTT
* *
10392117 TGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
1 TGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* * *
10392181 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTT
1 TGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
* * *
10392245 TGACAAGTTTGGAAGTTCGT-CCAGAA-CTA-AGAG-AACAATTCTCACGTGACTAAGTT
1 TGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTT
10392301 ATTTATTAAT
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
60 20 0.18
61 4 0.04
62 2 0.02
63 5 0.05
64 79 0.72
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (64 bp):
TGACAAGTTTGGAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTG
Found at i:10392580 original size:60 final size:61
Alignment explanation
Indices: 10392460--10392642 Score: 210
Period size: 60 Copynumber: 3.0 Consensus size: 61
10392450 ATCGTAAAAG
* * * *
10392460 TTTGACAAGTTCGGATGTTTCGTCCAAGAAGCAAGAGAGAAACAATTCCTACGTAAATAAGTT
1 TTTGACAAGTTCGGAAG-TTCGTCCAAG-ACCAAGAGAGAAACAATACCTACGTAAATAAGTC
* *
10392523 TTTGACAAGTTCGGAAGTTCGTCCAAGACCAAGAG-GAAACAGTA-CTCATGTAAATAAGTC
1 TTTGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGAAACAATACCT-ACGTAAATAAGTC
* * * * *
10392583 TTTGACAAGTTCGAAAGTTCGTCCAAAACCAATAGAGAACCAATTGCC-ACGTAAATAAGT
1 TTTGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGAAACAA-TACCTACGTAAATAAGT
10392643 TTTTAATTAT
Statistics
Matches: 103, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
59 2 0.02
60 50 0.49
61 23 0.22
62 11 0.11
63 17 0.17
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (61 bp):
TTTGACAAGTTCGGAAGTTCGTCCAAGACCAAGAGAGAAACAATACCTACGTAAATAAGTC
Found at i:10392737 original size:342 final size:338
Alignment explanation
Indices: 10391568--10393543 Score: 2041
Period size: 342 Copynumber: 5.8 Consensus size: 338
10391558 CTCGTGAAAG
* * * * * *
10391568 TTTGACAAGTTTGAAAGTTCATCCAA-CACCAAG-GAGATACAATTCTCACATAAATAA--CTTT
1 TTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * *
10391629 AATT-TAAAGACCAAAACTTGTTTACAAAATGAC-AACTATTTAGACCAAATGATCGGACTTTTC
65 AATTAT-TAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTC
* * * * *
10391692 GAGCATGGAATGTTAGAAAAATTTCTAGAAGGCATGGATTAACTTGAATACTTTTTGGAACCGAA
128 GAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGAA
* *
10391757 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCTAAGAAGCAAGAGA-AAACA
193 GTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * * * *
10391821 ATTCTTACGT-AATAAGTTTTTGACAAGTTCGGAAGTT-GATCCAAGAACCAAGAGTG-AATAGT
258 ATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCG-TCCAAGAACCAAGAGAGAAACAAT
* * * *
10391883 ACTCATGTAAATTAGTC
322 TCTCACGTAAATAAGTT
* * *
10391900 TTTGACAAGTTCGAAGTTTGTCCAAGAACC-AGAGAG-AACGAATTGC-CACGTAAATAAGTTTT
1 TTTGACAAGTTTGAAGTTCGTCCAAGAACCAAGAGAGAAAC-AATT-CTCACGTAACTAAGTTTT
** * * * * * *
10391962 TAATT-CGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGCGATTTCC
64 TAATTATTA-GTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT-T
* * * * * * * * * * *
10392026 CGAGCATGGATTGCTCAAAAAATTGCTCGAAAGAATAGATCATCTCGAATGCTTTCAGGAACCAA
127 CGAGCATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGA
* * *
10392091 AGTTATAAATGAAATCGTAAAAAGTTTGACAAGTTCGGATGTTCGTCCCAGAACCAAGAGAGAAA
192 AGTTATAAAAGAAATCGT-AAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAA
*
10392156 CAATTCTCACGTAAATAAGTTTTTGTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAT
256 CAATTCTCACGTAAATAAG-TTTT-TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
10392221 AATTCTCACGTAAATAAGTTTT
319 AATTCTCACGTAAATAAG--TT
* *
10392243 TTTGACAAGTTTGGAAGTTCGTCC-AGAA-CTA-AGAG-AACAATTCTCACGTGACTAAGTTATT
1 TTTGACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTT-TT
*
10392304 T-ATTAATTAACAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGCTT
64 TAATT-ATT---AGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATT
* * *
10392368 TTCCGAGTATGGAATGTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAA
125 TT-CGAGCATGGAATGTTCG-AAAAATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAA
* * *
10392433 CCGAAGTCATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTTCGTCCAAGAAGCAAGAGA
188 CCGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATG-TTCGTCCAAGAACCAAGAGA
*
10392498 GAAACAATTC-CTACGTAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAG-ACCAAGAG-GA
252 GAAACAATTCTC-ACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGA
* * * *
10392560 AACAGTACTCATGTAAATAAGTC
316 AACAATTCTCACGTAAATAAGTT
* * * *
10392583 TTTGACAAGTTCGAAAGTTCGTCCAA-AACCAATAGAGAACCAATTGC-CACGTAAATAAGTTTT
1 TTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT-CTCACGTAACTAAGTTTT
* * * ** * *
10392646 TAATTATTCAAGTAACGAAACTTGTTTACAAAAAGATGAACTATTTAGACCAAATTATGTGATTT
64 TAATTATT--AGT-CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
* * * *
10392711 CTCGAGCATGGAATGTTTCGAAAAATTACTCGAAAGAATGGATCATCTTGAATACTTTCAGGAAC
126 -TCGAGCATGGAATG-TTCGAAAAATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAAC
* * * ** *
10392776 TGAAGTTATAAAAGAAATCATAATAGTTTGACAAGTTTGGAT-TTCACCCAAGAACCAAGAGGGA
189 CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGA
* * *
10392840 AACAATTCTCACGTAAATAAGATTTTGACAAGTTTGGAAGTTTTGTCCAAGAACCAAGA-AGGAA
254 AACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAG-TTCGTCCAAGAACCAAGAGAGAAA
10392904 CAATTCTCACGTAAATAAGTT
318 CAATTCTCACGTAAATAAGTT
* * *
10392925 TTTGAAAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCTCTCACGTAACTAAGT
1 TTTGACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAA---T-TCTCACGTAACTAAGT
* * * *
10392990 TATTAATTAATAGTCCAAAACTTGTTTACAAACTGGCAAACTATTTAGACCAAATGATGGGATTT
61 TTTTAATTATTAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTT
* * * *
10393055 TCCGAGTATGGAATGTTC-AAATAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAAA
126 T-CGAGCATGGAATGTTCGAAA-AATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAAC
** * *
10393119 CGAAGTCGTAAAAGAAATCGTAAAAGTTTGACAACTTTGGATGTTCGTCCCAA-AACTAAGAGAG
189 CGAAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGT-CCAAGAACCAAGAGAG
* * * *
10393183 AAACAATTCTCATGTCAATAA-ATTTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAA
253 AAACAATTCTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAG-AA
*
10393247 ACAATTCTCACGTCAATAAGTT
317 ACAATTCTCACGTAAATAAGTT
* * * *
10393269 TTTGAAAATTTTTGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT-ACTAAGTTATT
1 TTTGACAA-GTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTT
* * * *
10393333 AATTAATAGTCC-AAACTTGTTTTC-AAATGAC-AACTATTTTTGACCAAATGATGTGATTTCTC
65 AATTATTAGTCCAAAACTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGGGATTT-TC
* * * * * * *
10393395 GAGCGTGGAATGTTTG-GAAATTTGCTCA-AAGGAAT-GATCGTCTTG-ATTCTTTAAGGAACCT
128 GAGCATGGAATGTTCGAAAAATTT-CT-AGAAGGAATGGATCATCTTGAATACTTTTAGGAACCG
* * * *** * * * *
10393456 AAGTTATAAAAGAAACTCGTGAGAGTTTGACAAGCTCAAAAGTTCATCCAACAACCAAG-GAGAT
191 AAGTTATAAAAGAAA-TCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAA
* *
10393520 A-GATTCTCGCGTAAATAAGTTTTT
255 ACAATTCTCACGTAAATAAGTTTTT
10393544 AATTGAAAGA
Statistics
Matches: 1379, Mismatches: 198, Indels: 131
0.81 0.12 0.08
Matches are distributed among these distances:
331 14 0.01
332 32 0.02
333 2 0.00
334 46 0.03
335 124 0.09
336 84 0.06
337 62 0.04
338 19 0.01
339 28 0.02
340 119 0.09
341 54 0.04
342 238 0.17
343 162 0.12
344 180 0.13
345 97 0.07
346 96 0.07
347 22 0.02
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (338 bp):
TTTGACAAGTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAACTAAGTTTTTA
ATTATTAGTCCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCGAG
CATGGAATGTTCGAAAAATTTCTAGAAGGAATGGATCATCTTGAATACTTTTAGGAACCGAAGTT
ATAAAAGAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAATT
CTCACGTAAATAAGTTTTTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTT
Found at i:10392877 original size:61 final size:62
Alignment explanation
Indices: 10392802--10392973 Score: 240
Period size: 62 Copynumber: 2.8 Consensus size: 62
10392792 ATCATAATAG
*
10392802 TTTGACAAGTTTGG-ATTTCACCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGAT
1 TTTGACAAGTTTGGAATTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGAT
** * *
10392863 TTTGACAAGTTTGGAAGTTTTGTCCAAGAACCAAGAAGG-AACAATTCTCACGTAAATAAGTT
1 TTTGACAAGTTTGGAA-TTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGAT
* * * *
10392925 TTTGAAAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTC
1 TTTGACAAGTTTGGAATTTCATCCAAGAACCAAGAGGGAAACAATTCTC
10392974 TCTCACGTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
61 30 0.31
62 48 0.50
63 18 0.19
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (62 bp):
TTTGACAAGTTTGGAATTTCATCCAAGAACCAAGAGGGAAACAATTCTCACGTAAATAAGAT
Found at i:10393065 original size:686 final size:681
Alignment explanation
Indices: 10391639--10393489 Score: 2411
Period size: 686 Copynumber: 2.7 Consensus size: 681
10391629 AATTTAAAGA
* *
10391639 CCAAAACTTGTTTACAAAATGAC-AACTATTTAGACCAAATGATCGGACTTTT-CGAGCATGGAA
1 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGA-TTTTCCGAGTATGGAA
* * * *
10391702 TGTTAG-AAAAATTTCTAGAAGGCATGGATTAACTTGAATACTTTTTGGAACCGAAGTTATAAAA
65 TGTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTCATAAAA
* *
10391766 GAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCTAAGAAGCAAGAGA-AAACAATTCTTACG
130 GAAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCCTACG
* *
10391830 TAATAAGTTTTTGACAAGTTCGGAAGTT-GATCCAAGAACCAAGAGTG-AATAGTACTCATGTAA
195 TAATAAGTTTTTGACAAGTTCGGAAGTTCG-TCCAAGAACCAAGAGAGAAACAGTACTCATGTAA
* * *
10391893 ATTAGTCTTTGACAAGTTCGAAGTTTGTCCAAGAACC-AGAGAGAACGAATTGCCACGTAAATAA
259 ATAAGTCTTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAA
* *
10391957 GTTTTT-A--ATTCGAGGACCGAAACTTGTTTACAAAAAGACAAACTATTTAGACCAAATTATGC
324 GTTTTTAATTATTC-AGTA-CGAAACTTGTTTACAAAAAGA-AAACTATTTAGACCAAATTATGT
* * * * * *
10392019 GATTTCCCGAGCATGGATTG-CTCAAAAAATTGCTCGAAAGAATAGATCATCTCGAATGCTTTCA
386 GATTTCTCGAGCATGGAATGTTTCGAAAAATTGCTCGAAAGAAT-GATCATCTTGAATACTTTCA
* * *
10392083 GGAACCAAAGTTATAAATGAAATCGTAAAAAGTTTGACAAGTTCGGATGTTCGTCCCAGAACCAA
450 GGAA-CTAAGTTATAAAAGAAATCGT-AAAAGTTTGACAAGTTCGGATGTTCGACCCAGAACCAA
*
10392148 GAGAGAAACAATTCTCACGTAAATAAGTTTTTGTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
513 GAGAGAAACAATTCTCACGTAAATAAGTATTTGTGACAAGTTTGGAAGTTCGTCCAAGAACCAAG
* * *
10392213 AGAGAAATAATTCTCACGTAAATAAGTTTTTTTGACAAGTTTGGAAGTTCGTCCAGAACTAAGAG
578 AGAGAAACAATTCTCACGTAAATAAG-TTTTTTGAAAAGTTTGGAAGTTCATCCAGAACTAAGAG
* * * *
10392278 AACAATTCTCACGTGACTAAGTTATTTATTAATTAACAGT
642 AACAATTCTCACGTCACTAACTAAGTTATTAATTAACAGT
*
10392318 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGCTTTTCCGAGTATGGAAT
1 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGTATGGAAT
10392383 GTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTCATAAAAG
66 GTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTCATAAAAG
*
10392448 AAATCGTAAAAGTTTGACAAGTTCGGATGTTTCGTCCAAGAAGCAAGAGAGAAACAATTCCTACG
131 AAATCGTAAAAGTTTGACAAGTTTGGATG-TTCGTCCAAGAAGCAAGAGAGAAACAATTCCTACG
10392513 TAAATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAG-ACCAAGAG-GAAACAGTACTCATGTAA
195 T-AATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAA
*
10392576 ATAAGTCTTTGACAAGTTCGAAAGTTCGTCCAA-AACCAATAGAGAACCAATTGCCACGTAAATA
259 ATAAGTCTTTGACAAGTTCG-AAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATA
*
10392640 AGTTTTTAATTATTCAAGTAACGAAACTTGTTTACAAAAAGATGAACTATTTAGACCAAATTATG
323 AGTTTTTAATTATTC-AGT-ACGAAACTTGTTTACAAAAAGA-AAACTATTTAGACCAAATTATG
*
10392705 TGATTTCTCGAGCATGGAATGTTTCGAAAAATTACTCGAAAGAATGGATCATCTTGAATACTTTC
385 TGATTTCTCGAGCATGGAATGTTTCGAAAAATTGCTCGAAAGAAT-GATCATCTTGAATACTTTC
* * *
10392770 AGGAACTGAAGTTATAAAAGAAATCATAATAGTTTGACAAGTTTGGAT-TTC-ACCCAAGAACCA
449 AGGAACT-AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGACCC-AGAACCA
* *
10392833 AGAGGGAAACAATTCTCACGTAAATAAG-ATTT-TGACAAGTTTGGAAGTTTTGTCCAAGAACCA
512 AGAGAGAAACAATTCTCACGTAAATAAGTATTTGTGACAAGTTTGGAAG-TTCGTCCAAGAACCA
*
10392896 AGA-AGGAACAATTCTCACGTAAATAAG-TTTTTGAAAAGTTTGGAAGTTCATCCAAGAACTAAG
576 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTTGAAAAGTTTGGAAGTTCATCC-AGAACT-A-
* *
10392959 AGAGAAACAATTCTCTC-TCACGTAACTAAGTTATTAATTAATAGT
638 AGAG-AACAATTCTCACGTCAC-TAACTAAGTTATTAATTAACAGT
* *
10393004 CCAAAACTTGTTTACAAACTGGCAAACTATTTAGACCAAATGATGGGATTTTCCGAGTATGGAAT
1 CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGTATGGAAT
* * *
10393069 GTTC-AAATAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAAACGAAGTCGTAAAAG
66 GTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTCATAAAAG
*
10393133 AAATCGTAAAAGTTTGACAACTTTGGATGTTCGTCCCAA-AA-CTAAGAGAGAAACAATT-CTCA
131 AAATCGTAAAAGTTTGACAAGTTTGGATGTTCGT-CCAAGAAGC-AAGAGAGAAACAATTCCT-A
* * * * * * *
10393195 TGTCAATAA-ATTTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAAACAATTCTCACG
193 CGT-AATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAGTACTCATG
* * * * * * *
10393259 TCAATAAGTTTTTGAAAATTTTTGAAGTTCGTCCAAGAACTAAGAGAGAAACAATT-CTCACGT-
256 TAAATAAGTCTTTGACAA-GTTCGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGC-CACGTA
* * * * * * * * *
10393322 ACTAAGTTATTAATTAAT-AGT-CCAAACTTGTTTTC-AAATGACAACTATTTTTGACCAAATGA
319 AATAAGTTTTTAATTATTCAGTACGAAACTTGTTTACAAAAAGAAAACTA-TTTAGACCAAATTA
* * * * *
10393384 TGTGATTTCTCGAGCGTGGAATGTTT-GGAAATTTGCTC-AAAGGAATGATCGTCTTG-ATTCTT
383 TGTGATTTCTCGAGCATGGAATGTTTCGAAAAATTGCTCGAAA-GAATGATCATCTTGAATACTT
* * *
10393446 TAAGGAACCTAAGTTATAAAAGAAACTCGTGAGAGTTTGACAAG
447 TCAGGAA-CTAAGTTATAAAAGAAA-TCGTAAAAGTTTGACAAG
10393490 CTCAAAAGTT
Statistics
Matches: 1046, Mismatches: 90, Indels: 72
0.87 0.07 0.06
Matches are distributed among these distances:
678 26 0.02
679 56 0.05
680 55 0.05
681 126 0.12
682 56 0.05
683 95 0.09
684 154 0.15
685 121 0.12
686 187 0.18
687 110 0.11
688 60 0.06
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (681 bp):
CCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGGGATTTTCCGAGTATGGAAT
GTTCGAAAAAATTTCTAGAAGGAATGGATTATCTTGAATACTTTTTGGAACCGAAGTCATAAAAG
AAATCGTAAAAGTTTGACAAGTTTGGATGTTCGTCCAAGAAGCAAGAGAGAAACAATTCCTACGT
AATAAGTTTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAGTACTCATGTAAAT
AAGTCTTTGACAAGTTCGAAGTTCGTCCAAGAACCAAGAGAGAACCAATTGCCACGTAAATAAGT
TTTTAATTATTCAGTACGAAACTTGTTTACAAAAAGAAAACTATTTAGACCAAATTATGTGATTT
CTCGAGCATGGAATGTTTCGAAAAATTGCTCGAAAGAATGATCATCTTGAATACTTTCAGGAACT
AAGTTATAAAAGAAATCGTAAAAGTTTGACAAGTTCGGATGTTCGACCCAGAACCAAGAGAGAAA
CAATTCTCACGTAAATAAGTATTTGTGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAAC
AATTCTCACGTAAATAAGTTTTTTGAAAAGTTTGGAAGTTCATCCAGAACTAAGAGAACAATTCT
CACGTCACTAACTAAGTTATTAATTAACAGT
Found at i:10393241 original size:61 final size:62
Alignment explanation
Indices: 10393145--10393321 Score: 241
Period size: 62 Copynumber: 2.9 Consensus size: 62
10393135 ATCGTAAAAG
* *
10393145 TTTGACAACTTTGGATGTTCGTCCCAA-AACTAAGAGAGAAACAATTCTCATGTCAATAA-AT
1 TTTGACAACTTTGGAAGTTCGT-CCAAGAACTAAGAGAGAAACAATTCTCACGTCAATAAGAT
* * * *
10393206 TTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAAACAATTCTCACGTCAATAAGTT
1 TTTGACAACTTTGGAAGTTCGTCCAAGAACTAAGAGAG-AAACAATTCTCACGTCAATAAGAT
* * *
10393269 TTTGAAAATTTTTGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT
1 TTTGACAACTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT
10393322 ACTAAGTTAT
Statistics
Matches: 102, Mismatches: 11, Indels: 5
0.86 0.09 0.04
Matches are distributed among these distances:
60 3 0.03
61 30 0.29
62 35 0.34
63 34 0.33
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (62 bp):
TTTGACAACTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTCAATAAGAT
Found at i:10393311 original size:62 final size:62
Alignment explanation
Indices: 10393145--10393329 Score: 232
Period size: 61 Copynumber: 3.0 Consensus size: 62
10393135 ATCGTAAAAG
* * * * *
10393145 TTTGACAACTTTGGATGTTCGTCCCAA-AACTAAGAGAGAAACAATTCTCATGTCAATAA-AT
1 TTTGAAAAGTTTGGAAGTTCGT-CCAAGAACTAAGAGAGAAACAATTCTCACGTCAATAAGTT
* * *
10393206 TTTGACAAGTTTGGAAGTTCGTCGAAGAACCAAGAGAGAAAACAATTCTCACGTCAATAAGTT
1 TTTGAAAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAG-AAACAATTCTCACGTCAATAAGTT
* * *
10393269 TTTGAAAATTTTTGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGT-ACTAAGTT
1 TTTGAAAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTCAATAAGTT
10393330 ATTAATTAAT
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
60 3 0.03
61 37 0.34
62 35 0.32
63 34 0.31
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (62 bp):
TTTGAAAAGTTTGGAAGTTCGTCCAAGAACTAAGAGAGAAACAATTCTCACGTCAATAAGTT
Found at i:10394187 original size:60 final size:61
Alignment explanation
Indices: 10394007--10394252 Score: 295
Period size: 60 Copynumber: 4.0 Consensus size: 61
10393997 GTTAATTAAT
* * * * *
10394007 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC-TGGATATGAATTTCTTTTGAACTTGTCA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG--ACGAATATC---CGAA-TTGTCA
10394071 AA
60 AA
* *
10394073 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAATTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAATTGTCAAA
* *
10394133 AACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTT-GACCAATATCCGAATTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAATTGTCAAA
* *
10394193 AACTTATTTAAGTAAGAATTGTTTCTCT-TTGGTTCTTGGACGAACATCCGAATTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAATTGTCAAA
10394253 CTTTTACTAT
Statistics
Matches: 164, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
59 10 0.06
60 78 0.48
61 31 0.19
64 6 0.04
65 30 0.18
66 9 0.05
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAATTGTCAAA
Found at i:10394498 original size:62 final size:62
Alignment explanation
Indices: 10394402--10394616 Score: 224
Period size: 61 Copynumber: 3.5 Consensus size: 62
10394392 TTTTATTATT
* * * * * *
10394402 AAAACCTTATTTACGTGAGAA-TGGTTCTCTCTCGGTTCTT-GTACGAACTTTCAAACTGGTA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTAG-ACGAACTTCCAAACTAGTC
*
10394463 AAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTGGAACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTAG-ACGAACTTCCAAACTAGTC
* * * * * * *
10394526 AAAAACTTATTT--ATGTGAAATGTTTCTCTCTTTGTTTCTTAGACGATCATCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTC-TCGGTTCTTAGACGAACTTCCAAACTAGTC
* *
10394587 AAAAAC-TATTTACGTAAGAATTGTTTCTCT
1 AAAAACTTATTTACATGAGAATTGTTTCTCT
10394617 AGTTCTGGGA
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
60 5 0.04
61 57 0.44
62 39 0.30
63 29 0.22
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTAGACGAACTTCCAAACTAGTC
Found at i:10394588 original size:397 final size:392
Alignment explanation
Indices: 10393789--10394905 Score: 1215
Period size: 396 Copynumber: 2.8 Consensus size: 392
10393779 TCTTAAAATT
* * * *
10393789 AAAAACTTATTTACGTGAGAA-TGTATCTCCTTGGTTCTTGGACGAAC-TTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * ** * *
10393852 TTTCACGAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTGCA
65 TTTTAC--A-TCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATT-CTTTCGTGCA
* * * * **
10393916 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGAAATTTTGTA
126 ATTTTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTT-ATCTTTTGT-
* * * *
10393980 AAACAAGATTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
188 AAACAAG-TTTTGGTCCT-TTAATTAA-AACTTATTTACGTGAGAA-TGGTTCTCTCTCGGTTCT
* * *
10394044 GGATATGAATTTCTTTTGAACTTGTCAAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTC
249 TG-TACGAA---CTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
*
10394108 TTGG-ACGAACTTCCAAATTGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTG
310 TTGGAACGAACTTCCAAATAGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTG
*
10394172 ACCAATATCCGAATTGTC
375 ACCAATATCCAAATTGTC
*
10394190 AAAAACTTATTTAAGTAAGAATTGTTTCTCTTTGGTTCTTGGACGAACATCCGAA-TTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCTC-TTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
10394254 TTTTAC-T-ATTTATAACTTCGGTTCC-GAAAGTGTTCAAGATGATCTCATTCTTTCGAGCAATT
65 TTTTACATCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATC-CATTCTTTCGTGCAATT
*
10394316 TTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATCTTTTTGTAAACA
129 TTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATC-TTTTGTAAACA
10394381 AGTTTTGGTCCTTTTATTATTAAAACCTTATTTACGTGAGAATGGTTCTCTCTCGGTTCTTGTAC
193 AGTTTTGGTCC-TTTA--ATTAAAA-CTTATTTACGTGAGAATGGTTCTCTCTCGGTTCTTGTAC
* * * * *
10394446 GAACTTTCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTGGAACGA
254 GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAACGA
* * * *
10394511 ACTTCCAAACTAGTCAAAAACTTATTTATGTGA-AAT-GTTTCTCTCTTTGTTTCTTAGA-CGAT
319 ACTTCCAAA-TAGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTC-TTGGTTCTT-GACCAAT
10394573 CATCCAAACTTGTC
381 -ATCCAAA-TTGTC
* * * *
10394587 AAAAAC-TATTTACGTAAGAATTGTTTCTC-TAGTTCTGGGATGAACATCCGAATTTGTCAAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AAAC
10394650 TTTTACGATTCTTTTATAACTTCGGTTCCAGAGAAAGTATTCAAGAT-ATCCATTCTTTC-TGCA
65 TTTTAC-A-TCTTTTATAACTTCGGTTCC--AGAAAGTATTCAAGATGATCCATTCTTTCGTGCA
* * *
10394713 ATTTTTCTAACATTCCATGCTC-AGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTA
126 ATTTTTCAAACATTCCATGCTCGA-G-AAATCGCATAATTTGGTATAAATAGTTTATCTTTTGTA
* * * *
10394777 AACCAGTTTTGGTCC-TGAATTAAAAAC-TATTTACGTGAGAGTTGTTACTCTC-CTGGTTC-TG
189 AACAAGTTTTGGTCCTTTAATT-AAAACTTATTTACGTGAGAATGGTT-CTCTCTC-GGTTCTTG
* * * *
10394838 GACGAAC-TTCTGAACTTGTCAAAAACTTATGTACGTAATAATTGTTT-TCTCTTGGTTC-TGGA
251 TACGAACTTTC-GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
10394900 ACGAAC
315 ACGAAC
10394906 AACCGAACTT
Statistics
Matches: 621, Mismatches: 61, Indels: 76
0.82 0.08 0.10
Matches are distributed among these distances:
393 29 0.05
394 73 0.12
395 93 0.15
396 111 0.18
397 111 0.18
398 23 0.04
399 2 0.00
400 63 0.10
401 58 0.09
402 40 0.06
403 18 0.03
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (392 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
TTTACATCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCGTGCAATTTT
TCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATCTTTTGTAAACAAGT
TTTGGTCCTTTAATTAAAACTTATTTACGTGAGAATGGTTCTCTCTCGGTTCTTGTACGAACTTT
CGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAACGAACTTCCA
AATAGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGACCAATATCCAAATTG
TC
Found at i:10395016 original size:274 final size:273
Alignment explanation
Indices: 10394577--10395136 Score: 751
Period size: 274 Copynumber: 2.0 Consensus size: 273
10394567 GACGATCATC
* * * * *
10394577 CAAACTTGTCAAAAACTATTTACGTAAGAATTGTTTCTCTAGTTCTGGGATGAACATCCGAATTT
1 CAAACTTGTCAAAAACTATGTACGTAAGAATTGTTTCTCTAGTTCTGGAACGAACAACCGAACTT
* *
10394642 GTCAAAACTTTTACGATTCTTTTATAACTTCGGTTCCAGAGAAAGTATTCAAGATATCCATTCTT
66 GTCAAAACTTTTACGATTCTTTTATAACTTCGGTTCCAGAGAAACTATTCAAGATATCCATTCCT
* *** *
10394707 TCTGCAATTTTTCTAACATTCCATGCTCAGGAAAATCGCATAATTTGGTCTAAATAGTTTGTC-T
131 TCTGAAATTTTAAAAACATTCCATGCTCAGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCAT
* * *
10394771 TTTGTAAACCAGTTTTGGTC-CTGAATTAAAAAC-TATTTACGTGAGAGTTGTTACTCTCC-TGG
196 TTTGTAAACAAGTTTTGGTCTCTAAATTAAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGG
*
10394833 TTC-TGGACGAACTT
259 TTCTTGGACAAACTT
* * *
10394847 CTGAACTTGTCAAAAACTTATGTACGTAATAATTGTTTTCTCTTGGTTCTGGAACGAACAACCGA
1 C-AAACTTGTCAAAAAC-TATGTACGTAAGAATTG-TTTCTC-TAGTTCTGGAACGAACAACCGA
10394912 ACTTGTC-AAACTTTTACGATTTCTTTTATAACTTCGGTTCCA-A-AAACTATTCAAGATAATCC
62 ACTTGTCAAAACTTTTACGA-TTCTTTTATAACTTCGGTTCCAGAGAAACTATTCAAGAT-ATCC
* * *
10394974 ATTCCTTCTAGAAATTTTAAAAAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTG
125 ATTCCTTCT-GAAATTTT-AAAAACATTCCATGCTCAGGAAAATCCCATAATTTGGTCTAAATAG
*
10395038 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCT
188 TTTGTCATTTTGTAAACAAGTTTTGGTCTCTAAATTAAAAACTTATTTACGTGAGAATTGTATCT
*
10395103 CCTTGGTTCTTGGATAAACTT
253 CCTTGGTTCTTGGACAAACTT
10395124 CAAACTTGTCAAA
1 CAAACTTGTCAAA
10395137 CTTTCACGTG
Statistics
Matches: 252, Mismatches: 25, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
270 1 0.00
271 14 0.06
272 28 0.11
273 31 0.12
274 84 0.33
275 38 0.15
276 30 0.12
277 26 0.10
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (273 bp):
CAAACTTGTCAAAAACTATGTACGTAAGAATTGTTTCTCTAGTTCTGGAACGAACAACCGAACTT
GTCAAAACTTTTACGATTCTTTTATAACTTCGGTTCCAGAGAAACTATTCAAGATATCCATTCCT
TCTGAAATTTTAAAAACATTCCATGCTCAGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGTCTCTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTT
CTTGGACAAACTT
Found at i:10395347 original size:215 final size:216
Alignment explanation
Indices: 10394858--10395351 Score: 542
Period size: 215 Copynumber: 2.3 Consensus size: 216
10394848 TGAACTTGTC
* * **
10394858 AAAAACTTA-TGTACGTAATAATTGTTT-TCTCTTGGTTC-TGGAACGAACAACCGAACTTGTCA
1 AAAAACTTAGT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-ACGAAC-TTCGAACTTGTCA
* * *
10394920 AACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAG
63 AACTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAG
* * * * **
10394985 AAATTTTAAAAAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
128 AAATTTTAAAAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
* *
10395050 TAAACAAGTTTTGGTCTTTAAATT
193 TAAACAAGTTTGGGACTTTAAATT
* * ** *
10395074 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTCAAACTTGTCAAAC
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAC
* ** * * * *
10395138 TTTCACG-TGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTGC
66 TTTCACGAT-TTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AGA
** *
10395201 AA-TTTCCAAACCATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAAATAGTTTGAAATTTT
129 AATTTTAAAAAACATTCCATGCTCGGA-AAATCACATCATTTGGTC-AAAATAGTTTGAAATTTT
10395264 G-AAA-AAGTTTGGGACTGTT-AATT
192 GTAAACAAGTTTGGGACT-TTAAATT
* *
10395287 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10395352 AACTTATTTA
Statistics
Matches: 232, Mismatches: 36, Indels: 21
0.80 0.12 0.07
Matches are distributed among these distances:
213 43 0.19
214 57 0.25
215 92 0.40
216 34 0.15
217 6 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAC
TTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAAA
TTTTAAAAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTGGGACTTTAAATT
Found at i:10395389 original size:60 final size:62
Alignment explanation
Indices: 10395290--10395531 Score: 327
Period size: 60 Copynumber: 4.0 Consensus size: 62
10395280 GTTAATTAAT
* * * * **
10395290 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10395352 AACTTATTTACATGAGAA-T-TTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10395412 AACTTATTTACA-AAG-ATTGTTTCTGTCTTGGTTCCTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10395472 AACTTA-TTA-AGTAAGAATTGTTTCTCTCTTGGTTC-TGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACA-TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10395532 CTTTTACTTT
Statistics
Matches: 162, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
58 2 0.01
59 6 0.04
60 119 0.73
61 19 0.12
62 16 0.10
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (62 bp):
AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10395819 original size:62 final size:62
Alignment explanation
Indices: 10395682--10395898 Score: 285
Period size: 62 Copynumber: 3.5 Consensus size: 62
10395672 TTAAATTAAT
* * * * * *
10395682 AAAACTTATTTACGTGAGAATTG-TTCTCTCTCGGTTCTTGTAACGAACTTTCGAATTGAGTAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-GACGAACTTCCAAACT-AGTCA
*
10395745 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
* * * *
10395807 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTTAGACGAACATCCAAAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AAACTAGTCA
*
10395869 AAAACTTATTTACGTAAGAATTGTTTCTCT
1 AAAACTTATTTACGTGAGAATTGTTTCTCT
10395899 AGTTCTGGGA
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
61 14 0.10
62 75 0.54
63 34 0.24
64 16 0.12
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCA
Found at i:10396197 original size:62 final size:61
Alignment explanation
Indices: 10396079--10396204 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 61
10396069 TCCTTGAATT
* * * * *
10396079 AAAAACTTATTTACGTGAGAGTTGTTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10396140 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTG-TTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10396202 AAA
1 AAA
10396205 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 21 0.37
62 36 0.63
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (61 bp):
AAAAACTTATGTACGTAAGAATTGTTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10396309 original size:275 final size:272
Alignment explanation
Indices: 10395806--10396418 Score: 885
Period size: 275 Copynumber: 2.2 Consensus size: 272
10395796 CAAACTAGTC
* * * *
10395806 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTTAGACGAACATCCAAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAAC-TTCTAAACTTGTCAA
*
10395870 AAACTTATTTACGTAAGAATTGTTTCTCTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
64 AAACTTATGTACGTAAGAATTGTTTCTCTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
* * * *
10395935 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTC
129 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTC
* * * * *
10396000 TAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTT
194 GAACATTCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
10396065 TTGGTCCTTGAATT
259 TTGGTCCTTAAATT
* * *
10396079 AAAAACTTATTTACGTGAGAGTTGTTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAA
* *
10396144 ACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTT
66 ACTTATGTACGTAAGAATTG-TT-TCTC-TAGTTCTGGGATGAACATCCGAACTTGTCAAACTTT
10396209 TACGATTTC-TTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTT
128 TACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAA-TT
* * *
10396273 TTCGAACATTCCATGCT-TGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAA
191 TTCGAACATTCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
10396337 GTTTTGGTCTTTAAATT
256 GTTTTGGTCCTTAAATT
10396354 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAAACTT-TCAAACTTGTCA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACG-AACTTCT-AAACTTGTCA
10396417 AA
63 AA
10396419 CTTTCACGTG
Statistics
Matches: 304, Mismatches: 27, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
272 42 0.14
273 36 0.12
274 35 0.12
275 153 0.50
276 38 0.12
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (272 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAA
ACTTATGTACGTAAGAATTGTTTCTCTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTCGA
ACATTCCATGCTCAGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
GGTCCTTAAATT
Found at i:10396714 original size:63 final size:62
Alignment explanation
Indices: 10396574--10396819 Score: 327
Period size: 63 Copynumber: 4.0 Consensus size: 62
10396564 GTTAATTACT
* * ***
10396574 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAAC-TTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10396635 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC-AAA
* * *
10396698 AACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10396760 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10396820 CTTTTACGAT
Statistics
Matches: 165, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
60 32 0.19
61 45 0.27
62 31 0.19
63 57 0.35
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10397055 original size:400 final size:403
Alignment explanation
Indices: 10396354--10397096 Score: 1027
Period size: 400 Copynumber: 1.9 Consensus size: 403
10396344 TCTTTAAATT
* * * * *
10396354 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAAACATCCAAACTTGTCAAA
* ** *
10396419 CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCACGTGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCTGCA
*
10396484 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAA
* ** * *
10396549 AACAAGTTTTGGACTGTTAATTACTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
196 AACAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGA
* *
10396614 ACGAACTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 ACGAACTTTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10396679 ACTTCCAAACTTGTCAAAAAACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAAC
326 ACATCCAAACTTGTCAAAAAACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAAC
10396744 ATCCAAACTTGTC
391 ATCCAAACTTGTC
* * *
10396757 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTAGTTCTGGGATG-AACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAAACATCCAAACTTGTCAAA
* * *
10396820 CTTTTACGAT-TTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGA-TATCCATT-CTTTCTAG
66 CTTTCACG-TGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCT-G
* * * * * **
10396882 CAATTTTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTG-TCTTTTT
129 CAAATTTCCAAACATTCCATGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTT
* * * *
10396945 GT-AAACCAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTT
193 -TAAAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTT
* *
10397008 CTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTT
256 CTTGAACGAACTT-TGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTT
*
10397073 GGACGAACATCCGAACTTGTCAAA
320 GGACGAACATCCAAACTTGTCAAA
10397097 CTTTTACGAT
Statistics
Matches: 296, Mismatches: 38, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
399 72 0.24
400 128 0.43
401 56 0.19
402 13 0.04
403 27 0.09
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (403 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTGGGACGAAACATCCAAACTTGTCAAA
CTTTCACGTGTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTCTGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAA
AACAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGA
ACGAACTTTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACATCCAAACTTGTCAAAAAACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAAC
ATCCAAACTTGTC
Found at i:10397069 original size:62 final size:62
Alignment explanation
Indices: 10396970--10397096 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10396960 TCCTTGAATT
* * * * *
10396970 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10397032 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10397094 AAA
1 AAA
10397097 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10397250 original size:278 final size:275
Alignment explanation
Indices: 10396695--10397311 Score: 891
Period size: 277 Copynumber: 2.2 Consensus size: 275
10396685 AAACTTGTCA
* * * * *
10396695 AAAAACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10396760 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
* * * *
10396825 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
* * * *
10396890 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CGAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10396955 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * **
10396970 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10397035 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTT
10397100 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* *
10397165 TTTCGAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTA-TTTGTCATTTTGTAAA
193 TTTCGAACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAA-TAGTTTGTCATTTTGTAAA
*
10397228 CAAGTTTTGGTCTTTAAATT
256 CAAGTTTTGGTCCTTAAATT
** * *
10397248 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCC-TGGTTCTTGGACGAACATCCAAACTTGTCAA
10397311 A
65 A
10397312 CTTTCACGTG
Statistics
Matches: 305, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
275 76 0.25
276 7 0.02
277 110 0.36
278 110 0.36
279 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
CGAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10397298 original size:893 final size:889
Alignment explanation
Indices: 10395469--10397985 Score: 4026
Period size: 893 Copynumber: 2.8 Consensus size: 889
10395459 CGAACTTGTC
* * * * * *
10395469 AAAAACTTA-TTAAGTAAGAATTGTTTCTCTCTTGGTTC-TGGACG-AACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAAACTTTCAAACTTGTCAA
* * * * * *
10395531 AC-TT----T-TACTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
65 ACTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTG
* * * ***
10395589 C-AATCTTTCGAACATTCCATGCTCGAGAAATC-GATCATTTGGT-ATAAATAGTTTGTCTTTTT
129 CAAAT-TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTG-AAATTT
* ** * *
10395651 GTTTAAACAAGTTTTGGTCCATTAAATTAATAAAACTTATTTACGTGAGAATTG-TTCTCTCTCG
191 -TTTAAACAAGTTTTGGACTGTT-AATTAAT--AACTTAGTTACGTGAGAATTGTTTCTCTCTTG
*
10395715 GTTCTTGTAACGAACTTTCGAA-TTGAGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
252 GTTCTTG-AACGAACTTT-GAACTT--GTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTG
*
10395779 GTTCTTGGACGAACTTCCAAACTAGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-T
313 GTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTT
10395843 CTTAGACGAACATCCAAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC-TAGTTCTGG
378 CTTAGACGAACATCC-AAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGG
10395907 GATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTC
442 GATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTC
10395972 AAGATATCCATTCTTTCTAGCAA-TTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTC
507 AAGATATCCATTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTC
10396036 TAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGT
572 TAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGT
10396101 TGTTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTT
637 TGTTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTT
*
10396166 TCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTATAACTTCGG
702 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTATAACTTCGG
10396231 TTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGAAAA
767 TTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGAAAA
*
10396296 TCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
832 TCCCATCATTTGGTCTAAATTATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
10396354 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAACTTTCAAACTTGTCAAA
10396419 CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
10396484 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTT-A
*
10396549 AACAAGTTTTGGACTGTTAATTACTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
10396614 ACGAACTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
260 ACGAACTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10396679 ACTTCCAAACTTGTCAAAAAACATATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAAC
325 ACTTCCAAACTTGTC-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAAC
10396744 ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCG
389 ATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCG
10396809 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATT
454 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATT
10396874 CTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGT
519 CTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGT
10396939 CTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCT
584 CTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTT-CTCTCCT
10397004 GGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGT
648 GGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGT
10397069 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAC
713 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC-TTTATAACTTCGGTTCCAAAAAC
10397134 TATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCAT
777 TATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTT-GAAAATCCCATCAT
10397199 TTGGTCTAAATTATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
841 TTGGTCTAAATTATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
*
10397248 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGA-TAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAACTTTCAAACTTGTCAAA
10397312 CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
*
10397377 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
*
10397442 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
196 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
* *
10397507 CGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGA
261 CGAAC-TTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * * *
10397572 ACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTG-TTCTCTCTTGGTTCCTGGACCAATA
325 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACA
* * * * *
10397636 TCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCC
390 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCC
* **
10397701 GAACTTGTCAAACTTTTAC----T-ATTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCA
453 GAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCA
* * * *
10397761 TTCTTTCGAGCAATCTTTCGAACATTCCATGCTC-GAGAAATCGCATAATTTGGTATAAATAGTT
517 TTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAG-GAAATCGCATAATTTGGTCTAAATAGTT
* *
10397825 TGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCT
581 TGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTT-GTTCTCT
* ** * * * * *
10397890 -CTCGGTTCTTGTACGAACTTCCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCT
645 CCT-GGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCT
* * *
10397954 TGGTTCTTGGACGAACTTCCAAACTAGTCAAA
709 TGGTTCTTGGACGAACATCCGAACTTGTCAAA
10397986 AACTTATTTA
Statistics
Matches: 1535, Mismatches: 67, Indels: 56
0.93 0.04 0.03
Matches are distributed among these distances:
885 17 0.01
886 23 0.01
887 17 0.01
888 99 0.06
889 282 0.18
890 148 0.10
891 180 0.12
892 216 0.14
893 420 0.27
894 132 0.09
895 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (889 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAACTTTCAAACTTGTCAAA
CTTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
CGAACTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
CCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAA
CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCT
TTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT
TTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTCTCTCCTGGT
TCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCT
TGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTATAACTTCGGTTCCAAAAACTATT
CAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGAAAATCCCATCATTTGGT
CTAAATTATTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:10397439 original size:215 final size:216
Alignment explanation
Indices: 10397032--10397527 Score: 637
Period size: 215 Copynumber: 2.3 Consensus size: 216
10397022 TGAACTTGTC
* * * *
10397032 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
10397097 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * * **
10397162 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTATTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAAATATTTGAAATTTTGTAA
*
10397227 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* ** *
10397248 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
10397312 CTTTCACG-TGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTG
66 CTTTCACGAT-TTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG
10397375 CAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTC-AAAATAGTTTGAAATTT
129 -AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCTAAAATA-TTTGAAATTT
10397437 TGTAAACAAGTTTTGGACTGTTAATT
191 TGTAAACAAGTTTTGGACTGTTAATT
* * *
10397463 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10397528 AACTTATTTA
Statistics
Matches: 241, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
214 9 0.04
215 170 0.71
216 62 0.26
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAAATATTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10397645 original size:61 final size:62
Alignment explanation
Indices: 10397466--10397712 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
10397456 GTTAATTAAT
* * **
10397466 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
10397528 AACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10397590 AACTTATTTACGTAAGAATTG-TTCTCTCTTGGTTCCTGGACCAA-TATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
* * *
10397651 AACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10397713 CTTTTACTAT
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
60 1 0.01
61 54 0.32
62 112 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10397687 original size:123 final size:124
Alignment explanation
Indices: 10397466--10397712 Score: 363
Period size: 123 Copynumber: 2.0 Consensus size: 124
10397456 GTTAATTAAT
* * * **
10397466 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAACTTCCGAACTTGTCAAAAAC
* * *
10397531 TTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTAAGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10397590 AACTTATTTACGTAAGAATTG-TTCTCTCTTGGTTCCTGGACCAA-TATCCGAACTTGTCAAAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAACT-TCCGAACTTGTCAAAAA
** *
10397653 CTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
65 CTTATTTAAGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAA
10397713 CTTTTACTAT
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
122 1 0.01
123 90 0.82
124 19 0.17
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAACTTCCGAACTTGTCAAAAAC
TTATTTAAGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10398106 original size:60 final size:62
Alignment explanation
Indices: 10397859--10398107 Score: 358
Period size: 62 Copynumber: 4.0 Consensus size: 62
10397849 TCCTTGAATT
* * * * *
10397859 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTCCAAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* * *
10397921 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* *
10397983 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* * * *
10398045 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACATCCGAACTGGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
10398105 AAA
1 AAA
10398108 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
60 33 0.19
61 2 0.01
62 137 0.80
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
Found at i:10398335 original size:62 final size:62
Alignment explanation
Indices: 10398258--10398384 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10398248 TCCTTGAATT
* * * * * *
10398258 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTC
* *
10398320 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTC
10398382 AAA
1 AAA
10398385 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTC
Found at i:10398490 original size:277 final size:275
Alignment explanation
Indices: 10397983--10398598 Score: 934
Period size: 277 Copynumber: 2.2 Consensus size: 275
10397973 CAAACTAGTC
* * * *
10397983 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* **
10398048 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTTGGACAAACATCCGAACTGGTCAAACTTTT
* * * *
10398113 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
* * *
10398178 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10398243 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * * *
10398258 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* *
10398323 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGACAAACATCCGAACTGGTCAAACTT
10398388 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* * *
10398453 TTTCGAACATTCCATGCT-TGGAAAATC-CATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAC
193 TTTCGAACATTCCATGCTCAGG-AAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10398516 AAGTTTTGGTCTTTAAATT
257 AAGTTTTGGTCCTTAAATT
10398535 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTT-TCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCT-AAACTTGTCAA
10398598 A
65 A
10398599 CTTTCACAAA
Statistics
Matches: 308, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
275 79 0.26
276 32 0.10
277 157 0.51
278 40 0.13
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTTGGACAAACATCCGAACTGGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10398851 original size:62 final size:62
Alignment explanation
Indices: 10398754--10398967 Score: 340
Period size: 62 Copynumber: 3.5 Consensus size: 62
10398744 GTTAATTAAT
* ***
10398754 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
*
10398816 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
* *
10398878 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-AGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA-ACGAACTTCCAAACTTGTCAAA
*
10398940 AACTTATTTACGTAAGAATTGTTTCTCT
1 AACTTATTTACGTGAGAATTGTTTCTCT
10398968 TAGTTCTGGA
Statistics
Matches: 142, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
62 142 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
Found at i:10399226 original size:62 final size:62
Alignment explanation
Indices: 10399149--10399275 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10399139 TCCTTGAATT
* * * * *
10399149 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10399211 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10399273 AAA
1 AAA
10399276 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10399234 original size:398 final size:402
Alignment explanation
Indices: 10398535--10399275 Score: 1057
Period size: 398 Copynumber: 1.9 Consensus size: 402
10398525 TCTTTAAATT
* * * *
10398535 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAC
* ** *
10398600 TTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
66 TTTCACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCTGCAA
*
10398665 ATTTCCAAACATATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
131 ATTTCCAAACATATCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAA
* * * *
10398730 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
196 ACAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGAA
* * *
10398795 CGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
261 CGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10398860 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACA
326 ACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACA
10398925 TCCAAACTTGTC
391 TCCAAACTTGTC
* * *
10398937 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTAGTTC-TGGATGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAC
* * * *
10399000 TTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATT-CTTTCTAGCA
66 TTTCACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCT-GCA
* * * * * **
10399063 ATTTTTCTAACAT-TCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTG-TCTTTTTG
130 AATTTCCAAACATATCCATGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTT-
* * * *
10399125 TAAACCAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCT
193 TAAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTGTCTCTCCTGGTTCT
*
10399189 TGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
257 TGAACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
*
10399254 ACGAACATCCGAACTTGTCAAA
322 ACGAACATCCAAACTTGTCAAA
10399276 CTTTTACGAT
Statistics
Matches: 298, Mismatches: 37, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
397 6 0.02
398 175 0.59
399 21 0.07
400 62 0.21
401 7 0.02
402 27 0.09
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (402 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTTGGACGAACATCCAAACTTGTCAAAC
TTTCACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCTGCAA
ATTTCCAAACATATCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAAATTTTTTAA
ACAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGAA
CGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACATCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACA
TCCAAACTTGTC
Found at i:10399245 original size:891 final size:890
Alignment explanation
Indices: 10397648--10399827 Score: 3767
Period size: 891 Copynumber: 2.5 Consensus size: 890
10397638 CGAACTTGTC
* * * * * * *
10397648 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * *
10397713 CTTTTAC--T-ATTTATAACTTCGGTT-CTTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC-
65 CTTTCACATTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATACATTCCTTT-GTGCA
* * * * **
10397772 AATCTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTTG-TCTTTTTG
128 AAT-TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGAAATTTTT-
* * * * * *
10397835 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCT
190 TAAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* *** * *
10397899 TGTACGAACTTCCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
254 TGAACGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
*
10397964 ACGAACTTCCAAACTAGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACG
319 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACG
10398029 AACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACAT
384 AACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACAT
10398094 CCGAACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCC
449 CCGAACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCC
10398159 ATTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTT
514 ATTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTT
10398224 TGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCT
579 TGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCT
10398289 CCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTT
644 CCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTT
10398354 GGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
709 GGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
10398419 AACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAAT-CCAT
774 AACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCAT
*
10398483 CATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
839 CATTTGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
10398535 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
10398600 TTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
66 TTTCAC--ATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
10398665 ATTTCCAAACATATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
129 ATTTCCAAACAT-TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
10398730 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
193 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
*
10398795 CGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
258 CGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
10398860 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACA
323 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACA
10398925 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTC-TGGATGAACATCCGA
388 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGA
*
10398989 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTC
453 ACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTC
10399054 TTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
518 TTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
10399119 TTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTG
583 TTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTG
10399184 GTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTT
648 GTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTT
*
10399249 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACT
713 CTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACT
10399314 ATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATT
778 ATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATT
10399379 TGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
843 TGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
10399427 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
**
10399492 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATACATTCCTTTGTGCAA
66 TTTCAC-A-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
*
10399557 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAA-TTTTTAAA
129 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAA
10399621 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
194 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
10399686 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
259 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * *
10399751 CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACAT
324 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACAT
*
10399814 CCGAACTTGTCAAA
389 CCAAACTTGTCAAA
10399828 CTTTTACGAT
Statistics
Matches: 1233, Mismatches: 46, Indels: 27
0.94 0.04 0.02
Matches are distributed among these distances:
886 36 0.03
887 27 0.02
888 33 0.03
889 2 0.00
890 175 0.14
891 487 0.39
892 467 0.38
893 6 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (890 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
TTTCACATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAAAT
TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAACA
AGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGA
ACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCC
AAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACT
GGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTT
CTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTT
TTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTT
CTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTT
GGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATT
CAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGG
TCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:10399678 original size:215 final size:215
Alignment explanation
Indices: 10399211--10399705 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 215
10399201 TGAACTTGTC
* * *
10399211 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
10399276 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * * * **
10399341 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTCGTCATTTTGTAA
130 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTCGAAATTTTGTAA
*
10399406 ACAAGTTTTGGTCTTTAAATT
195 ACAAGTTTTGGACTTTAAATT
* *
10399427 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * *
10399491 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACAATACATTCCTT-TGTGC
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG-
* *
10399555 AAA-TTTCCAAACTTTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTT-
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTCGAAATTTTG
10399617 TAAACAAGTTTTGGACTGTT-AATT
192 TAAACAAGTTTTGGACT-TTAAATT
* * *
10399641 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10399706 AACTTATTTA
Statistics
Matches: 242, Mismatches: 31, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
214 50 0.21
215 162 0.67
216 29 0.12
217 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTCGAAATTTTGTAAA
CAAGTTTTGGACTTTAAATT
Found at i:10399824 original size:60 final size:62
Alignment explanation
Indices: 10399644--10399827 Score: 264
Period size: 62 Copynumber: 3.0 Consensus size: 62
10399634 GTTAATTAAT
* * **
10399644 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10399706 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10399768 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10399828 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
60 33 0.30
61 2 0.02
62 75 0.68
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10400095 original size:60 final size:61
Alignment explanation
Indices: 10399978--10400102 Score: 180
Period size: 60 Copynumber: 2.0 Consensus size: 61
10399968 TCCTTGAATT
* * * * *
10399978 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTA-TCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
*
10400040 AAAAACTTATGTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTATCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10400100 AAA
1 AAA
10400103 CTTTCACAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 34 0.60
62 23 0.40
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (61 bp):
AAAAACTTATGTACGTAAGAATTGTTATCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10400499 original size:60 final size:62
Alignment explanation
Indices: 10400257--10400502 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
10400247 GTTAATTAAT
* * * ***
10400257 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10400319 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10400381 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
10400443 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10400503 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 32 0.19
61 2 0.01
62 134 0.80
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10400752 original size:62 final size:62
Alignment explanation
Indices: 10400653--10400779 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
10400643 TCCTTGAATT
* * * * *
10400653 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
10400715 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10400777 AAA
1 AAA
10400780 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10400777 original size:399 final size:399
Alignment explanation
Indices: 10399978--10400779 Score: 1119
Period size: 399 Copynumber: 2.0 Consensus size: 399
10399968 TCCTTGAATT
* * * **
10399978 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTAGACGAACATCCAAACTTGTCAAA
* *
10400043 AACTTATGTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTC
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTC
* ** *
10400108 ACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAAATTT
131 ACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCTGCAAATTT
*
10400173 CCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAACTTTTTAAACAAG
196 CCAAACAATCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTG-AACTTTTTAAACAAG
* * * *
10400238 TTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAAC
260 TTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGAACGAAC
* * * *
10400303 TTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
325 TTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
10400368 CAAACTTGTC
390 CAAACTTGTC
* * *
10400378 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTAGACGAACATCCAAACTTGTCAAA
* * *
10400443 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTC
* * * *
10400508 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATT-CTTTCTAGCAATTT
131 ACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCT-GCAAATT
* * * * * *
10400571 TTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTG-TCTTTTTGTAAAC
195 TCCAAACAATCCATGCTCGA-GAAATCACATAATTTGGTCAAAATAGTTTGAAC-TTTT-TAAAC
* * * * *
10400634 CAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGAC
257 AAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGAAC
* *
10400698 GAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
321 GAACTTCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10400763 CATCCGAACTTGTC
386 CATCCAAACTTGTC
10400777 AAA
1 AAA
10400780 CTTTTACGAT
Statistics
Matches: 353, Mismatches: 44, Indels: 11
0.87 0.11 0.03
Matches are distributed among these distances:
397 1 0.00
398 10 0.03
399 186 0.53
400 156 0.44
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (399 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTAGACGAACATCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTC
ACAAATTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATACATTCCTTTCTGCAAATTT
CCAAACAATCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGAACTTTTTAAACAAGT
TTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTACTCTCCTGGTTCTTGAACGAACT
TCTGAACTTGTCAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
AAACTTGTC
Found at i:10400920 original size:278 final size:275
Alignment explanation
Indices: 10400378--10400994 Score: 916
Period size: 278 Copynumber: 2.2 Consensus size: 275
10400368 CAAACTTGTC
* * * *
10400378 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10400443 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
* * * *
10400508 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
* * * *
10400573 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CGAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
10400638 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * **
10400653 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10400718 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTT
10400783 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* * *
10400848 TTTCGAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAC
193 TTTCGAACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
*
10400912 AAGTTTTGGTCTTTAAATT
257 AAGTTTTGGTCCTTAAATT
** * *
10400931 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCC-TGGTTCTTGGACGAACATCCAAACTTGTCAA
10400994 A
65 A
10400995 CTTTCACGTG
Statistics
Matches: 307, Mismatches: 30, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
275 77 0.25
276 7 0.02
277 111 0.36
278 112 0.36
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
CGAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:10401122 original size:215 final size:216
Alignment explanation
Indices: 10400715--10401210 Score: 635
Period size: 215 Copynumber: 2.3 Consensus size: 216
10400705 TGAACTTGTC
* * * *
10400715 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * *
10400780 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * * * **
10400845 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
*
10400910 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * *
10400931 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* ** * * *
10400995 CTTTCACG-TGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTG
66 CTTTCACGAT-TTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG
10401058 CAAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTT
129 -AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGAAATTTT
10401121 GTAAACAAGTTTTGGACTGTTAATT
192 GTAAACAAGTTTTGGACTGTTAATT
* * * * *
10401146 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
10401211 AACTTATTTA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 4 0.02
215 176 0.73
216 61 0.25
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:10401231 original size:62 final size:62
Alignment explanation
Indices: 10401149--10401458 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
10401139 GTTAATTAAT
* * **
10401149 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10401211 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
** * *
10401273 AACTTATTTACGTGAGAATTGTTTCTCTCTTTATTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10401335 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
* * *
10401397 AACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
10401459 CTTTTACTAT
Statistics
Matches: 227, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.00
62 226 1.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:10401849 original size:60 final size:62
Alignment explanation
Indices: 10401604--10401852 Score: 331
Period size: 62 Copynumber: 4.0 Consensus size: 62
10401594 TCCTTGAATT
* * * * * * *
10401604 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* ** *
10401666 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATGTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
*
10401728 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * ** *
10401790 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATAAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10401850 AAA
1 AAA
10401853 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
60 33 0.20
61 2 0.01
62 133 0.79
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10402043 original size:399 final size:396
Alignment explanation
Indices: 10401208--10402129 Score: 1374
Period size: 399 Copynumber: 2.3 Consensus size: 396
10401198 TGAACTTGTC
* * * *
10401208 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
** * *
10401273 AACTTATTTACGTGAGAATTGTTTCTCTCTTTATTCTTAGACGAACTTCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAC
* *
10401338 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAATATCCGAACTTGTCAAAAACTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCAAACTTGTCAAAAACTTA
* *
10401403 TTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTA
196 TTTAAGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACTA
* *
10401468 TTTATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTGAGCAATTTTTCGAACATTC
261 TTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTTTTCGAACATTC
10401533 CATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCT
326 CATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCT
10401598 TGAATT
391 TGAATT
* * *
10401604 AAAAACTTATTTACGTGAGAATTG-GT-TCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTAA
1 AAAAACTTATTTACGTGAGAATTGTGTCTCTC-CT-GGTTCTTGGACGAACTTTCAAACTTGTCA
*
10401667 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TGTCCAAACTAGTCAAA
64 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTAGTCAAA
* * *
10401731 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
128 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCAAACTTGTCAAAAAC
* *
10401796 TTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATAAACATCCGAACTTGTCAAACTTTTA
193 TTATTTAAGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
* *
10401859 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCAATTTTT
258 C----T-ATTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATTTTT
* * *
10401923 CTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAG
317 CGAACATTCCATGCTCGA-GAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAG
10401987 TTTTGGTCCTTGAATT
381 TTTTGGTCCTTGAATT
* *
10402003 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAAC-TTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACTTTC-AAACTTGTCAA
* * * * *
10402067 AAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAA
10402130 CTTTTACGAT
Statistics
Matches: 473, Mismatches: 39, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
394 45 0.10
395 5 0.01
396 182 0.38
398 16 0.03
399 217 0.46
400 4 0.01
401 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (396 bp):
AAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCAAACTTGTCAAAAACTTA
TTTAAGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACTA
TTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTTTTCGAACATTC
CATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCT
TGAATT
Found at i:10402080 original size:62 final size:62
Alignment explanation
Indices: 10402003--10402129 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
10401993 TCCTTGAATT
* * * * *
10402003 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10402065 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
10402127 AAA
1 AAA
10402130 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10402402 original size:62 final size:62
Alignment explanation
Indices: 10402305--10402741 Score: 622
Period size: 62 Copynumber: 7.0 Consensus size: 62
10402295 TCCTTCAATT
* * * *
10402305 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10402367 AAAAACTTATTTACTTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10402429 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGCTTCTAGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * *
10402491 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGATGAACTTTCGATCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
10402553 AAAAACTTGTTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10402615 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGATGAACATCGAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
10402677 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCTAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10402739 AAA
1 AAA
10402742 CTTTTACGAT
Statistics
Matches: 332, Mismatches: 43, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 332 1.00
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10403063 original size:215 final size:215
Alignment explanation
Indices: 10402677--10403172 Score: 622
Period size: 215 Copynumber: 2.3 Consensus size: 215
10402667 GAAACTTGTC
* * * * *
10402677 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCTAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * * *
10402742 CTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCATTCTTTCTAGCA
65 CTTTCAAGATTTCTTTTATAACTTAGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCAAACA
* * * ** * * *
10402807 ATTTTTCGAACATTCCAAGCTCGGGAAATCGCATGATTTGGTCTAAATAGTTTGTCATTTTGTAA
130 AATTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
10402872 ACAAGTTTTGGTCT-TTAAATT
195 ACAAGTTTTGGACTGTT-AATT
* *
10402893 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
**
10402957 CTTTCAAGATTTCTTTTATAACTTAGATTCCTTAAAGTATTCAAGA-AGATCCATTCCCTT-AAA
65 CTTTCAAGATTTCTTTTATAACTTAGATTCCAGAAAGTATTCAAGATA-ATCCATT-CCTTCAAA
* *
10403020 CAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTGT
128 CAAATTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
10403085 AAACAAGTTTTGGACTGTTAATT
193 AAACAAGTTTTGGACTGTTAATT
* * * * *
10403108 AATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10403173 AACTTATTTA
Statistics
Matches: 240, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 1 0.00
215 176 0.73
216 63 0.26
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAC
TTTCAAGATTTCTTTTATAACTTAGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCAAACAA
ATTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:10403210 original size:62 final size:62
Alignment explanation
Indices: 10403111--10403358 Score: 370
Period size: 62 Copynumber: 4.0 Consensus size: 62
10403101 GTTAATTAAT
* * * * *
10403111 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* ** *
10403173 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* *
10403235 AACTTATTTCCGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10403297 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10403359 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 168 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10403613 original size:62 final size:62
Alignment explanation
Indices: 10403516--10403700 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 62
10403506 TGAATTAATG
* * * *
10403516 ACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTGAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
* *
10403578 ACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
* * * *
10403640 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAA
10403701 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
Found at i:10404093 original size:61 final size:62
Alignment explanation
Indices: 10403934--10404180 Score: 352
Period size: 62 Copynumber: 4.0 Consensus size: 62
10403924 GTTAGTTAAT
* * * ***
10403934 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10403996 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10404057 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
10404119 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10404181 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
61 58 0.35
62 110 0.65
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10404153 original size:123 final size:123
Alignment explanation
Indices: 10403934--10404180 Score: 368
Period size: 123 Copynumber: 2.0 Consensus size: 123
10403924 GTTAGTTAAT
* ***
10403934 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10403999 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATCAA
66 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
* * *
10404057 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
* *
10404122 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAA
66 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
10404180 A
1 A
10404181 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
123 110 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.40
Consensus pattern (123 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
Found at i:10404405 original size:62 final size:61
Alignment explanation
Indices: 10404339--10404520 Score: 231
Period size: 62 Copynumber: 2.9 Consensus size: 61
10404329 ATTAAAAAAA
* *
10404339 TATTTACGTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACT
1 TATTTACGTAAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACT
* * * * * *
10404401 TATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAACT
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACT
* *
10404463 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10404521 CTTTTACAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 7 0.07
62 93 0.91
63 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (61 bp):
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACT
Found at i:10404568 original size:820 final size:822
Alignment explanation
Indices: 10402985--10404625 Score: 2788
Period size: 820 Copynumber: 2.0 Consensus size: 822
10402975 TAACTTAGAT
10402985 TCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAA
1 TCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAA
*
10403050 TCACATCATTTGGTGAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACT
66 TCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACT
*
10403115 TAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTGTCAAAAACTTAT
131 TAGTTACGTGAGAATTGGTTCTCTCTTGATTCCTGGACAAACTTCCGAACTTGTCAAAAACTTAT
* *
10403180 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTC
196 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATCAAAAACTTATTTA
*
10403245 CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACGT
261 CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACAT
* *
10403310 AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
326 AAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTT
*
10403375 TATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACACTTTCTAGTAATTTTTCAAACATT
391 TATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACACTTTCTAGCAATTTTTCAAACATT
* *
10403440 CCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAACAAGTTTTGGTCC
456 CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTGGTCC
** ** *
10403505 TTGAATTAATGACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACT
521 TTGAATTAAAAAAATATTTACGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACT
*
10403570 TGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGT
586 TGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGT
*
10403635 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
651 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
* *
10403700 ACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTGTTCAAGATAATCCATTCCTTCTAGA
716 ACTTTTACGAGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
*
10403765 AATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGA
781 AATTTTTCAAACATTCCATGCTCG-AAAATCCCATCATTTGGA
* * * *
10403808 TCCTTAAGGTATTCAAGAAGATCCATTCCTTTAATCAAATTTCCAAACATTCCATGCTCGAGAAA
1 TCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAA
* * *
10403873 TCACATCATTTGTTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGATTGTTAGTTAATAACT
66 TCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACT
* * ** **
10403938 TAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAAAAACTTAT
131 TAGTTACGTGAGAATTGGTTCTCTCTTGATTCCTGGACAAACTTCCGAACTTGTCAAAAACTTAT
*
10404003 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATC-AAAACTTATTTA
196 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATCAAAAACTTATTTA
* *
10404067 CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACAT
261 CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACAT
10404132 AAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTT
326 AAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTT
** *
10404197 TATA-AA-TTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATT
391 TATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACACTTTCTAGCAATTTTTCAAACATT
*
10404260 CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTGGTCC
456 CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTGGTCC
* *
10404325 TTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACT
521 TTGAATTAAAAAAATATTTACGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACT
* * * *
10404390 TGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTT-CAAAACTTG
586 TGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTAC-AAACTTG
10404454 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCA
650 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCA
*
10404519 AACTTTTAC-AGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTT
715 AACTTTTACGA-GTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTA
*
10404583 GCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGG
779 GAAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGG
10404626 TCTAAATAGT
Statistics
Matches: 768, Mismatches: 48, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
819 19 0.02
820 377 0.49
821 2 0.00
822 140 0.18
823 230 0.30
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (822 bp):
TCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAA
TCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACT
TAGTTACGTGAGAATTGGTTCTCTCTTGATTCCTGGACAAACTTCCGAACTTGTCAAAAACTTAT
TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATCAAAAACTTATTTA
CGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACAT
AAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTT
TATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACACTTTCTAGCAATTTTTCAAACATT
CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTGGTCC
TTGAATTAAAAAAATATTTACGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACT
TGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGT
CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
ACTTTTACGAGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
AATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGA
Found at i:10404826 original size:214 final size:214
Alignment explanation
Indices: 10404456--10404929 Score: 629
Period size: 215 Copynumber: 2.2 Consensus size: 214
10404446 AAAACTTGTC
* *
10404456 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* *
10404521 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTTGCA
65 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCC-TCTTACA
* * * *
10404586 ATTTTTCAAACATTCCATGCTCG-AAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
10404650 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTAGACTGTT-AATT
* * *
10404671 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* **
10404735 CTTTCAC-GATTTCTTTTATAACTT-AGATTCCTTAAAGTATTCAAGA-AGATCCATTCC-CTTA
65 CTTTCACAG-GTTCTTTTATAACTTCAG-TTCCAAAAAGTATTCAAGATA-ATCCATTCCTCTT-
*
10404796 AACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTT
126 -ACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10404861 GTAAACAAGTTTTAGACTGTTAATT
190 GTAAACAAGTTTTAGACTGTTAATT
* * *
10404886 AATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGA
10404930 CAAACTTCCG
Statistics
Matches: 229, Mismatches: 20, Indels: 19
0.85 0.07 0.07
Matches are distributed among these distances:
212 3 0.01
213 4 0.02
214 100 0.44
215 106 0.46
216 16 0.07
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAAC
TTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTCTTACAAA
TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTAGACTGTTAATT
Found at i:10405041 original size:62 final size:62
Alignment explanation
Indices: 10404889--10405073 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
10404879 GTTAATTAAT
* * *
10404889 AACTTAGTTACGTGAGAATTGGTTCTCTC-TTGATTCTTGGACAAACTTCCGAACTTATC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TTCTTGGACGAACTTCCGAACTTATCAAA
* *
10404950 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
* * * * * *
10405012 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
10405074 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
61 50 0.45
62 60 0.55
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
Found at i:10405206 original size:554 final size:554
Alignment explanation
Indices: 10404116--10405285 Score: 1602
Period size: 554 Copynumber: 2.1 Consensus size: 554
10404106 CAAACTTGTC
* * * * * *
10404116 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
10404181 CTTTTACGATTTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCA
65 CTTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATTCCTTCAAACA
* * * * * *
10404246 ATTTTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAA
130 AATTTCCAAACATTCCATGCTCAGAAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTGGTAA
* * * * *
10404311 ACAAGTTTTGGTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGA
195 ACAAGTTTTAGTACTTGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
* * * * * * *
10404376 CGAACTTTCGAACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGA
260 CAAACTTCCGAACTTATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGA
*
10404441 ACTTCAAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACA
325 ACTTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACA
* *
10404506 TCCGAACTTGTCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAAT
390 TCCGAACTTCTCAAACTTTTACAGGTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAAGATAAT
* *
10404571 CCATTCCTTCTTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGT
455 CCATTCCTTCTAGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATAATTTGGTCTAAATAGT
*
10404636 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
520 TTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
* *
10404671 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* **
10404735 CTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATTCAAGAAGATCCATTCCCTT-AAAC
65 CTTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATT-CCTTCAAAC
* *
10404799 AAATTTCCAAACATTCCATGCTC-GAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTT-G
129 AAATTTCCAAACATTCCATGCTCAG-AAAATCACATAATTTGGTCAAAATAGTTTGTC-TTTTGG
* * **
10404862 TAAACAAGTTTTAG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCT
192 TAAACAAGTTTTAGTACT-TGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCT
* * *
10404926 TGGACAAACTTCCGAACTTAT-CAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
256 TGGACAAACTTCCGAACTTATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGG
*
10404990 ACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTT-GAAC
321 ACGAACTTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAA-
* * *
10405054 GAACATCCGAACTTCTCAAACTTTTAC-GATTTCTTTTATAAATTCGGTTCCAGAAAGTATTCAA
385 GAACATCCGAACTTCTCAAACTTTTACAG-GTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAA
* * * * *
10405118 GATGATCCATTCTTTCTAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCT
449 GATAATCCATTCCTTCTAGCAATTTTTCAAACATTCCATGCTC-GAAAATCCCATAATTTGGTCT
*
10405183 AAATAGTTTGTC-TTTTGGTAAACAAGTTTTGGTCCTTGAATT
513 AAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCCTTAAATT
** *
10405225 AAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
10405286 GAAAAACTTA
Statistics
Matches: 538, Mismatches: 66, Indels: 22
0.86 0.11 0.04
Matches are distributed among these distances:
552 4 0.01
553 197 0.37
554 274 0.51
555 63 0.12
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATTCCTTCAAACAA
ATTTCCAAACATTCCATGCTCAGAAAATCACATAATTTGGTCAAAATAGTTTGTCTTTTGGTAAA
CAAGTTTTAGTACTTGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
AAACTTCCGAACTTATGAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAA
CTTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACAT
CCGAACTTCTCAAACTTTTACAGGTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAAGATAATC
CATTCCTTCTAGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATAATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:10405261 original size:893 final size:893
Alignment explanation
Indices: 10403996--10406846 Score: 5488
Period size: 893 Copynumber: 3.2 Consensus size: 893
10403986 ACTTGTCAAA
* * * ** *
10403996 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTATCAAAACT
1 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
10404061 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
66 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
10404126 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
131 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
10404191 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
196 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
10404256 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
261 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
10404321 GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
326 GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
10404386 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
391 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
10404451 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
456 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
10404516 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
521 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
10404581 TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
586 TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
10404646 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
651 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
10404711 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
716 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
10404776 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
781 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
10404841 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
846 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
10404889 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
1 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
10404954 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
66 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
10405019 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
131 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
10405084 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
196 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
10405149 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
261 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
10405214 GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
326 GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
10405279 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
391 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
10405344 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
456 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
10405409 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
521 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
10405474 TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
586 TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
10405539 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
651 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
10405604 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
716 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
10405669 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
781 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
10405734 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
846 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
10405782 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
1 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
10405847 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
66 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
10405912 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
131 TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
10405977 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
196 TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
*
10406042 CATTCCAAGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
261 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
10406107 GTCCTTGAATT-AAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
326 GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
10406171 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
391 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
10406236 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
456 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
10406301 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
521 TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
*
10406366 TTGCAATTTTTCAATCATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
586 TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
*
10406431 GTAAACAAGTTTTGGTCTTTAAATTAAAAACCTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
651 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
*
10406496 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGGTTCCTTAAAGTATT
716 GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
10406561 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
781 CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
10406626 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
846 TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
* * *
10406674 AACATAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATC-AAAAC
* * *
10406739 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * * * * *
10406804 TTTCCGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATC
130 TTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATC
10406847 TAAACTTGTC
Statistics
Matches: 1935, Mismatches: 22, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
892 609 0.31
893 1326 0.69
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (893 bp):
AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTATCAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
TTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAACTTTTACGAT
TTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAA
CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
GTCCTTGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAAC
TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
TCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
TTGCAATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
GGATGAACTTTCAAACTTGTCAAACTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATT
CAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGG
TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAAT
Found at i:10405298 original size:62 final size:61
Alignment explanation
Indices: 10405232--10405413 Score: 231
Period size: 62 Copynumber: 2.9 Consensus size: 61
10405222 ATTAAAAAAA
* *
10405232 TATTTACGTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACT
1 TATTTACGTAAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACT
* * * * * *
10405294 TATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAACT
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACT
* *
10405356 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10405414 CTTTTACAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 7 0.07
62 93 0.91
63 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (61 bp):
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACT
Found at i:10405629 original size:554 final size:554
Alignment explanation
Indices: 10405009--10406177 Score: 1593
Period size: 554 Copynumber: 2.1 Consensus size: 554
10404999 CAAACTTGTC
* * * * * *
10405009 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * *
10405074 CTTTTACGATTTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATT-CTTTCTAGC
65 CTTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATTCCCTT-AAAC
* * * * * *
10405138 AATTTTTCGAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGG
129 AAATTTCCAAACATTCCATGCTCGA-AAAATCACATAATTTGGTCAAAATAGTTTGTCATTTT-G
* * * * *
10405201 TAAACAAGTTTTGGTCCT-TGAATTAAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCT
192 TAAACAAGTTTTAG-ACTGTGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCT
* * * * * * *
10405265 TGGACGAACTTTCGAACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGT
256 TGGACAAACTTCCGAACTTAT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGG
*
10405330 ACGAACTTCAAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAA-
320 ACGAACTTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTT-GAAC
* *
10405394 GAACATCCGAACTTGTCAAACTTTTAC-AGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAA
384 GAACATCCGAACTTCTCAAACTTTTACGA-GTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAA
* * *
10405458 GATAATCCATTCCTTCTTGCAATTTTTCAAACATTCCATGCTC-GAAAATCCCATCATTTGGTCT
448 GATAATCCATTCCTTCTAGCAATTTTTCAAACATTCCAAGCTCAGAAAATCCCATAATTTGGTCT
*
10405522 AAATAGTTTGTCATTTT-GTAAACAAGTTTTGGTCTTTAAATT
513 AAATAGTTTGTC-TTTTGGTAAACAAGTTTTGGTCCTTAAATT
* *
10405564 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* **
10405628 CTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACA
65 CTTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATTCCCTTAAACA
* *
10405693 AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTGTAA
130 AATTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAA
* * **
10405758 ACAAGTTTTAGACTGTTAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
195 ACAAGTTTTAGACTGTGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
* * *
10405823 CAAACTTCCGAACTTATCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAA
260 CAAACTTCCGAACTTATAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAA
*
10405888 CTTCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACAT
325 CTTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACAT
* * * *
10405953 CCGAACTTCTCAAACTTTTACGATTTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATC
390 CCGAACTTCTCAAACTTTTACGAGTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAAGATAATC
* * * *
10406018 CATTCTTTCTAGCAATTTTTCGAACATTCCAAGCTCAGGAAATCGCATAATTTGGTCTAAATAGT
455 CATTCCTTCTAGCAATTTTTCAAACATTCCAAGCTCAGAAAATCCCATAATTTGGTCTAAATAGT
*
10406083 TTGTCTTTTGGTAAACAAGTTTTGGTCCTTGAATT
520 TTGTCTTTTGGTAAACAAGTTTTGGTCCTTAAATT
* *
10406118 AAAAA-ATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGT
10406178 GAAAAACTTA
Statistics
Matches: 537, Mismatches: 66, Indels: 23
0.86 0.11 0.04
Matches are distributed among these distances:
552 3 0.01
553 214 0.40
554 286 0.53
555 34 0.06
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTTCTTTTATAAATTAGATTCCAGAAAGTATTCAAGAAGATCCATTCCCTTAAACAA
ATTTCCAAACATTCCATGCTCGAAAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTAGACTGTGAATTAAAAAAATAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
AAACTTCCGAACTTATAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAAC
TTCAAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATC
CGAACTTCTCAAACTTTTACGAGTTCTTTTATAAATTCAGTTCCAAAAAGTATTCAAGATAATCC
ATTCCTTCTAGCAATTTTTCAAACATTCCAAGCTCAGAAAATCCCATAATTTGGTCTAAATAGTT
TGTCTTTTGGTAAACAAGTTTTGGTCCTTAAATT
Found at i:10405719 original size:214 final size:214
Alignment explanation
Indices: 10405349--10405822 Score: 629
Period size: 215 Copynumber: 2.2 Consensus size: 214
10405339 AAAACTTGTC
* *
10405349 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* *
10405414 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTTGCA
65 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCC-TCTTACA
* * * *
10405479 ATTTTTCAAACATTCCATGCTCG-AAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 AATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
10405543 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTAGACTGTT-AATT
* * *
10405564 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAA
* **
10405628 CTTTCAC-GATTTCTTTTATAACTT-AGATTCCTTAAAGTATTCAAGA-AGATCCATTCC-CTTA
65 CTTTCACAG-GTTCTTTTATAACTTCAG-TTCCAAAAAGTATTCAAGATA-ATCCATTCCTCTT-
*
10405689 AACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTT
126 -ACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10405754 GTAAACAAGTTTTAGACTGTTAATT
190 GTAAACAAGTTTTAGACTGTTAATT
* * *
10405779 AATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGA
10405823 CAAACTTCCG
Statistics
Matches: 229, Mismatches: 20, Indels: 19
0.85 0.07 0.07
Matches are distributed among these distances:
212 3 0.01
213 4 0.02
214 100 0.44
215 106 0.46
216 16 0.07
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAAC
TTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTCTTACAAA
TTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTAGACTGTTAATT
Found at i:10405934 original size:62 final size:62
Alignment explanation
Indices: 10405782--10405966 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 62
10405772 GTTAATTAAT
* * *
10405782 AACTTAGTTACGTGAGAATTGGTTCTCTC-TTGATTCTTGGACAAACTTCCGAACTTATC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TTCTTGGACGAACTTCCGAACTTATCAAA
* *
10405843 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
* * * * * *
10405905 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
10405967 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
61 50 0.45
62 60 0.55
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTATCAAA
Found at i:10406186 original size:339 final size:335
Alignment explanation
Indices: 10405564--10406515 Score: 1198
Period size: 339 Copynumber: 2.8 Consensus size: 335
10405554 TCTTTAAATT
* * * * * *
10405564 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT-GAAGAACATCCGAACTTGTCAAA
* * * ** * * *
10405628 CTTTCACGATTTCTTTTATAACTTAGATTCCTTAAAGTATTCAAGAAGATCCATTCCCTT-AAAC
65 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATGATCCATT-CCTTCTAGC
* * **
10405692 AAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTGTA
129 AATTTTTC-AACATTCCATGCTCG-AAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * ** * * *
10405757 AACAAGTTTTAG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTG
192 AACAAGTTTTGGTCCT-TAAATTAA-AAAATATTTACGTGAGAATTGGTTATCTCTTGGTTCTTG
* * * * * *
10405821 GACAAACTTCCGAACTTATCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACG
255 GACGAACTTTCGAACTTGTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACG
*
10405886 AACTTCCAAACTTGTC
320 AACTTCAAAACTTGTC
* *
10405902 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTCTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAA-GAACATCCGAACTTGTCAAA
* * *
10405967 CTTTTACGATTTCTTTTATAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCA
65 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGCA
* * * *
10406032 ATTTTTCGAACATTCCAAGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGGTA
130 ATTTTTC-AACATTCCATGCTC-GAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTT-GTA
* *
10406096 AACAAGTTTTGGTCCTTGAATTAAAAAATATTTACGTGAGAATTGGTTTTCTCTTGGTTCTTGGA
192 AACAAGTTTTGGTCCTTAAATTAAAAAATATTTACGTGAGAATTGGTTATCTCTTGGTTCTTGGA
* * * *
10406161 CGAACTTTCGAACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGA
257 CGAACTTTCGAACTTGT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGA
10406226 ACTTCAAAACTTGTC
321 ACTTCAAAACTTGTC
10406241 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT-GAAGAACATCCGAACTTGTCAAA
* * * *
10406306 CTTTTAC-AGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTTGC
65 CTTTTACGA-TTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGC
*
10406370 AATTTTTCAATCATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 AATTTTTCAA-CATTCCATGCTCGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
10406435 ACAAGTTTTGGTCTTTAAATTAAAAACCTATTTACGTGAGAATT-G-TATCTCCTTGGTTCTTGG
193 ACAAGTTTTGGTCCTTAAATTAAAAA-ATATTTACGTGAGAATTGGTTATCT-CTTGGTTCTTGG
* *
10406498 ATGAACTTTCAAACTTGT
256 ACGAACTTTCGAACTTGT
10406516 CAAACTTTCA
Statistics
Matches: 536, Mismatches: 65, Indels: 26
0.85 0.10 0.04
Matches are distributed among these distances:
337 4 0.01
338 176 0.33
339 350 0.65
340 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (335 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGAAGAACATCCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATGATCCATTCCTTCTAGCAA
TTTTTCAACATTCCATGCTCGAAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
AGTTTTGGTCCTTAAATTAAAAAATATTTACGTGAGAATTGGTTATCTCTTGGTTCTTGGACGAA
CTTTCGAACTTGTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTC
AAAACTTGTC
Found at i:10406190 original size:62 final size:61
Alignment explanation
Indices: 10406124--10406305 Score: 231
Period size: 62 Copynumber: 2.9 Consensus size: 61
10406114 AATTAAAAAA
* *
10406124 TATTTACGTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACT
1 TATTTACGTAAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAAAACT
* * * * * *
10406186 TATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAACT
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAAAACT
* *
10406248 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
10406306 CTTTTACAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
61 7 0.07
62 93 0.91
63 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (61 bp):
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAAAACT
Found at i:10406694 original size:215 final size:213
Alignment explanation
Indices: 10406241--10406735 Score: 626
Period size: 215 Copynumber: 2.3 Consensus size: 213
10406231 AAAACTTGTC
* * * *
10406241 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACATAGTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* *
10406306 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTTGCA
65 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCC-TCTTACA
* * * * *
10406371 ATTTTTCAATCATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
129 AATTTCCAAACATTCCATGCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
10406436 CAAGTTTTGGTCTTTAAATT
194 CAAGTTTTAGACTTTAAATT
* * * * *
10406456 AAAAACCTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACATAGTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* **
10406520 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGA-AGATCCATTCC-CTTA
65 CTTTCACAG-GTTCTTTTATAACTTCA-GTTCCAAAAAGTATTCAAGATA-ATCCATTCCTCTT-
*
10406581 AACAAATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTT
126 -ACAAATTTCCAAACATTCCATGCTCG-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10406646 GTAAACAAGTTTTAGACTGTT-AATT
189 GTAAACAAGTTTTAGACT-TTAAATT
*
10406671 AATAACATAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACATAGTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
10406735 A
64 A
10406736 AACTTATTTA
Statistics
Matches: 244, Mismatches: 25, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
212 3 0.01
213 3 0.01
214 100 0.41
215 104 0.43
216 34 0.14
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (213 bp):
AAAAACATAGTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAAC
TTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTCTTACAAA
TTTCCAAACATTCCATGCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA
AGTTTTAGACTTTAAATT
Found at i:10406783 original size:62 final size:62
Alignment explanation
Indices: 10406681--10406921 Score: 365
Period size: 62 Copynumber: 3.9 Consensus size: 62
10406671 AATAACATAG
* * *
10406681 TTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTAT
* ** *
10406743 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTAT
* * *
10406805 TTCCGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCTAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTAT
* * *
10406867 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10406922 CTTTTACGAT
Statistics
Matches: 161, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 161 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTAT
Found at i:10407176 original size:62 final size:62
Alignment explanation
Indices: 10407079--10407263 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 62
10407069 TGAATTAATG
* * * *
10407079 ACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTGAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
* *
10407141 ACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
* * * *
10407203 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAA
10407264 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTACGAACTTGTCAAAA
Found at i:10407660 original size:61 final size:61
Alignment explanation
Indices: 10407497--10407743 Score: 332
Period size: 62 Copynumber: 4.0 Consensus size: 61
10407487 GTTAGTTAAT
* * * * ***
10407497 AACTTAGTTACTTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
* * *
10407558 ACACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTATCAA
1 A-ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
*
10407620 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
* * * * *
10407682 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTCTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
10407743 A
1 A
10407744 CTTTTACGAT
Statistics
Matches: 164, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
61 58 0.35
62 106 0.65
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
Found at i:10407716 original size:123 final size:123
Alignment explanation
Indices: 10407497--10407743 Score: 350
Period size: 123 Copynumber: 2.0 Consensus size: 123
10407487 GTTAGTTAAT
* * *** *
10407497 AACTTAGTTACTTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAAACAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
** * * * *
10407562 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTATCAA
66 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
* * *
10407620 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
*
10407685 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTCTCAA
66 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
10407743 A
1 A
10407744 CTTTTACGAT
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
123 108 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (123 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTATCAA
Found at i:10407994 original size:62 final size:61
Alignment explanation
Indices: 10407895--10408083 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 61
10407885 TCCTTGAATT
* *
10407895 AAAAACTTATTTAT-GTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTT-TCGTAAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * *
10407957 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10408019 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10408081 AAA
1 AAA
10408084 CTTTTACAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
61 8 0.07
62 99 0.91
63 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10408464 original size:215 final size:212
Alignment explanation
Indices: 10408019--10408510 Score: 627
Period size: 215 Copynumber: 2.3 Consensus size: 212
10408009 AAAACTTGTC
* *
10408019 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* * * ** *
10408084 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCATAATCCATTCCTTCTGGAAATT
66 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCCTCTAAAAAAT
* * * * *
10408149 TTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
131 TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
* *
10408214 GTTTTGGTCTTTAAATT
196 GTTTTAGACTTTAAATT
* * * * *
10408231 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* **
10408295 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCT-TAA
66 CTTTCACAG-GTTCTTTTATAACTTCA-GTTCCAAAAAGTATTC-A-AA-ATCCATTCCCTCTAA
*
10408357 ACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
126 A-AAATTTCCAAACATTCAATCCTCG-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10408422 TAAACAAGTTTTAGACTGTT-AATT
189 TAAACAAGTTTTAGACT-TTAAATT
* *
10408446 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
10408510 A
65 A
10408511 AACTTATTTA
Statistics
Matches: 239, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
210 2 0.01
211 63 0.26
212 29 0.12
213 3 0.01
214 30 0.13
215 81 0.34
216 31 0.13
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (212 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCCTCTAAAAAAT
TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
GTTTTAGACTTTAAATT
Found at i:10408546 original size:62 final size:62
Alignment explanation
Indices: 10408449--10408696 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10408439 GTTAATTAAT
* * *
10408449 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10408511 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10408573 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10408635 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10408697 CTTTTATAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10408566 original size:820 final size:809
Alignment explanation
Indices: 10406548--10408185 Score: 2018
Period size: 820 Copynumber: 2.0 Consensus size: 809
10406538 TAACTTAGGT
* * * * ** * *
10406548 TCCTTAAAGTATTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCCATGCTCGAAAAA
1 TCCTAAAAGTATTCAAGAAGATCAATT-CTTTAATCAAATTTAAAAACATTCCACGCTCGAGAAA
* ** ** *
10406613 TCACATCATTTGG-TGAAAATAGTTTGTCATTTTGTAAACAAGTTTTA-GACTGTTAATTAATAA
65 TCACATCA-TTGGTTCAAAATAACTTGTCAACTTGTAAAC-A--TTTACGACTGTTAGTTAATAA
* * * **** * * * * * * * *
10406676 CATAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG-GACAAACTTCCGAACTTGTCAAAAACT
126 CTTAGTTACTTAAGAATTGAAGATCTCAT-GTCCCTGAAACAAA-TTTCAAACTTCTCAAACACT
* ** * * * ** * *
10406740 TATTTACATGAGAATTGTTTCTCTCTTGGTTCT-TGGATGAACTTCCAAACTTGTCAAAAACTTA
189 CATTTAGGTGAAAATAGTTTCTCTCAT-GTT-TGTAAACGAACTTCCAAACTTATC-AAAACTTA
* * *
10406804 TTTCCGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCTAAACTTGTCAAAAACTTATTT
251 TTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTT
* *
10406869 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
316 ACATAAGAATTGTTTCTCTCTTGGTTCTT-GA-G-A-A-CCGAACTT-CCAAACTTTTACGATTT
*
10406934 CTTTTATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTTCAAA
375 CTTTTATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGCAATTTTTCAAA
* *
10406999 CATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTCTAAACAAGTTTTG
440 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTG
**
10407064 GTCCTTGAATTAATGACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCG
505 GTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCG
*
10407129 AACTTGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAAC
570 AACTTGTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAAC
*
10407194 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
635 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTG
* *
10407259 TCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTGTTCAAGATAATCCATTCCTTC
700 TCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC-A-ATAATCCATTCCTTC
*
10407324 TAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGA
763 TAGAAATTTTTCAAACATTCCATGCTCGAAAAATCCCATCATTTGGA
* * * ** *
10407371 TCCTTAAGGTATTCAAGAAGATCCATTCCTTTAATCAAATTTCCAAACATTCCATGCTCGAGAAA
1 TCCTAAAAGTATTCAAGAAGATCAATT-CTTTAATCAAATTTAAAAACATTCCACGCTCGAGAAA
* ** ** **
10407436 TCACATCATTTGTTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAGTTAATAACT
65 TCACATCATTGGTTCAAAATAACTTGTCAACTTGTAAAC-A-TTTACGACTGTTAGTTAATAACT
* **** * * * ** * ** * *
10407501 TAGTTACTTGAGAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTGTCAAACACTTAT
128 TAGTTACTTAAGAATTGAAGATCTCAT-GTCCCTGAAACAAATTTCAAACTTCTCAAACACTCAT
* * * * * **
10407566 TTATGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTATCAAAACTTATTTAC
192 TTAGGTGAAAATAGTTTCTCTCAT-GTTTGTAAACGAACTTCCAAACTTATCAAAACTTATTTAC
*
10407631 GTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATA
256 GTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACATA
*
10407696 AGAATTGTTTCTCTCTTGGTTCTTGAACGAACATCCAAACTTCTCAAACTTTTACGATTTCTTTT
321 AGAATTGTTTCTCTCTTGGTTCTTG-A-G-A-A-CCGAACTTC-CAAACTTTTACGATTTCTTTT
* *
10407761 ATA-AA-TTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATTC
380 ATATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGCAATTTTTCAAACATTC
*
10407824 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTGGTCCT
445 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTGGTCCT
* *
10407889 TGAATTAAAAACTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTT
510 TGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTT
* * * *
10407954 GTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTT-CAAAACTTGT
575 GTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTAC-AAACTTGT
10408018 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
639 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
*
10408083 ACTTTTAC-AGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC-ATAATCCATTCCTTCTGGAA
704 ACTTTTACGA-GTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAATAATCCATTCCTTCTAGAA
10408146 ATTTTTCAAACATTCCATGCTCG-AAAATCCCATCATTTGG
768 ATTTTTCAAACATTCCATGCTCGAAAAATCCCATCATTTGG
10408186 TCTAAATAGT
Statistics
Matches: 756, Mismatches: 51, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
816 17 0.02
817 41 0.05
819 2 0.00
820 338 0.45
821 3 0.00
822 143 0.19
823 210 0.28
824 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (809 bp):
TCCTAAAAGTATTCAAGAAGATCAATTCTTTAATCAAATTTAAAAACATTCCACGCTCGAGAAAT
CACATCATTGGTTCAAAATAACTTGTCAACTTGTAAACATTTACGACTGTTAGTTAATAACTTAG
TTACTTAAGAATTGAAGATCTCATGTCCCTGAAACAAATTTCAAACTTCTCAAACACTCATTTAG
GTGAAAATAGTTTCTCTCATGTTTGTAAACGAACTTCCAAACTTATCAAAACTTATTTACGTGAG
AATTGTTTCTCTCTTTGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAAT
TGTTTCTCTCTTGGTTCTTGAGAACCGAACTTCCAAACTTTTACGATTTCTTTTATATAACTTCG
GTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGCAATTTTTCAAACATTCCATGCTCAGGA
AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGCTAAACAAGTTTTGGTCCTTGAATTAAAAA
CTTATTTATGTGAGAATTGGTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACTT
ATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATT
TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACGAGT
TCTTTTATAACTTCAGTTCCAAAAAGTATTCAATAATCCATTCCTTCTAGAAATTTTTCAAACAT
TCCATGCTCGAAAAATCCCATCATTTGGA
Done.