Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 52 of 144
Found at i:10408949 original size:62 final size:60
Alignment explanation
Indices: 10408851--10409018 Score: 210
Period size: 62 Copynumber: 2.7 Consensus size: 60
10408841 TTGAATTAAT
* * * * *
10408851 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATT-GTT-TCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
* *
10408913 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCT--TAGTTCTTGGACGAACTTACAAACTTGTCAAA
* * *
10408975 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAAC
10409019 ATCCGAACTT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
60 18 0.19
61 3 0.03
62 72 0.77
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10408970 original size:953 final size:951
Alignment explanation
Indices: 10407382--10413020 Score: 3367
Period size: 953 Copynumber: 5.8 Consensus size: 951
10407372 CCTTAAGGTA
* * * * *
10407382 TTCAAGAAGATCCATTCCTTTAATCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTT
1 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTT
* * * * *
10407447 GTTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAGTTAATAACTTAGTTACTTGA
66 GGTGAAAATAGTTTGTCATTTTGTAAAC-A-TTTTAGACTGTTAATTAATAACTTAGTTACGTGA
** * * *
10407512 GAATTGTTTCTCTCTTGGTTCCTGGATGAACTTTTGAACTTG-TCAAACACTTATTTATGTGAGA
129 GAATTGTTTCTCTCTTGGTT-CTGGACAAACTTTCGAACTTGATCAAAAACTTATTTA-CTGAGA
* *
10407576 ATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCAAACTTATC-AAAACTTATTTACGTGAGAATT
192 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
*
10407640 GTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTT
257 GTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
* * * ** *
10407705 TCTCTCTTGGTTCTTGAACGAACATCCAAACTTCTCAAACTTTTACGATTTCTTTTATAAATTCG
322 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCG
* *
10407770 GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATTCCATGCTCAGGA
387 GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCTCAGGA
* *
10407835 AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTGGTCCTTGAATTAAAAA
452 AATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
* *
10407900 CTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACTT
517 CTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTT
* * * *
10407965 ATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTT-CAAAACTTGTCAAAAACTTAT
582 ATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTAC-AAACTTGTCAAAAACTTAT
10408029 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACAGG
646 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACAGG
*
10408094 TTCTTTTATAACTTCAGTTCCAAAAAGTATTC-ATAATCCATTCCTTCTGGAAATTTTTCAAACA
711 TTCTTTTATAACTTCAGTTCCAAAAAGTATTCAATAATCCATTCCTTCTAGAAATTTTTCAAACA
10408158 TTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
776 TTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTTTTGGTC
* *
10408223 TTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAAC
840 TTTAAATTAAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAAC
* * * *
10408287 TTGTCAAAC-TTTCACGATTTCTTT-TATAACTTAGGTTCCTT-AAAGTA-
904 TTGTCAAACTTTTCACGATTTGTTTCTCT--CTTAGGTT-CTTGAACGAAC
10408334 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTT
1 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTT
10408399 GGTGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAATAACTTAGTTACGTGA
66 GGTGAAAATAGTTTGTCATTTTGTAAAC-A-TTTTAGACTGTTAATTAATAACTTAGTTACGTGA
*
10408464 GAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG-TCAAAAACTTATTTACATGAGA
129 GAATTGTTTCTCTCTTGGTTC-TGGACAAACTTTCGAACTTGATCAAAAACTTATTTAC-TGAGA
10408528 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
192 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10408593 GTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
257 GTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
*
10408658 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCT
322 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCG
* *
10408723 GTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTTCAAACATTCCATGCTCGGGA
387 GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCTCAGGA
*
10408788 AATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAATAA
452 AATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
*
10408853 CTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTT
517 CTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTT
*
10408918 ATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATT
582 ATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATT
* * * * *
10408983 TACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTCTCAAACTTTTAC-GAT
647 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACAG-G
* * * * * ** * *
10409045 TTCTTTTTTAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTGTTTCTAGCAATTTTTCGAA
711 TTCTTTTATAACTTCAGTTCCAAAAAGTATTC-A-ATAATCCATTCCTTCTAGAAATTTTTCAAA
* * *
10409110 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTG
774 CATTCCATGCTC-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCTTTT-GTAAACAAGTTTTG
* * * * *
10409175 GTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCG
837 GTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCA
* ** * *
10409240 AACTTGTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCT-GGTTCTTGTACGAAC
901 AACTTGT--CAAACTT-TTCACG--A-T-TTGTTTCTCTCTTAGGTTCTTGAACGAAC
** ** ** * ** * **** * * **
10409297 TTC-A-AA-A--C-TTGTCAAAAACTTATTTACGTA-A--GAAT--T-G-TTTCTCTCTTGGTTC
1 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATT-
* * ** ** * * ** * * *
10409349 TTG-GAAGAACA-TCCG--AACTTGTCAAAC-TTTTACA-GGTTCTTTTATAACTTCAGTTCCAA
65 TGGTGAA-AATAGTTTGTCATTTTGT-AAACATTTTAGACTGTTAATTAATAACTT-AGTTAC-G
** * ** ** ** ** * * * *
10409408 AAAGTATTCATAATC-CATTCCTTCTGGA-AATTTTTCAAACATTCCATGCTCGAAAATCCCATC
126 TGAGAATTGTTTCTCTC-TTGGTTCTGGACAAACTTTCGAAC--T---TGATC-AAAA--AC-TT
* * * * * ** *** ** *
10409471 ATTTGGTCT-A-AATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTT-TAAA--T-T-AAAAAC
181 ATTT--ACTGAGAATTGTTTCTC-TCTTGGT--TCTTG-GACGAACTTCCAAACTTGTCAAAAAC
* * * * *
10409528 TTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTC--AAAC---
240 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * * * * * * * * ** * ** **
10409587 TTT-C--ACGATTTCTTT-TATAACTTAGGTTCCTT-AAAGTA-TTCAAGAAGAT-CCATTCCCT
305 TTTACGTAAGAATTGTTTCTCT--CTT-GGTT-CTTGGACGAACATC-CGAACTTGTCAAACTTT
* ** ** ** * * * * ** * **
10409645 TAAACAAAT-TTCCA-AACATTC-AATCCTCGAAA--AATCACATCATTTGGTGAAAATAGTT-T
365 TATA-ATTTCTTTTATAAC-TTCGGTTCC-AGAAAGTATTCA-A-GA--TGAT-CCATTCTTTCT
* ** ** * * * *
10409704 -GTCATTTTGT-AAACAAGTTTTA-GACT--GTTAATTA-ATAACTTAGTTACGTGAGAATTGTT
422 AGTAATTTT-TCAAAC-A-TTCCATG-CTCAGGAAATCACATAA-TTTGGT-C-T-A-AATAGTT
* * ** ** ** ** * ** *
10409763 TCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG--TCAAAAACTTATTTACATGAGAATTGTTT
478 TGTCT-TT--TT-GTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTT
* * *
10409826 CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTC
539 CTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTTATTTACGTGAGTATTGTTTCTC
* * * * *
10409891 TCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
604 TCCTAGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
* * ** * *
10409956 TGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCTGTTCCAG
669 TGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACAGGTTCTTTTATAACTTCAGTTCCAA
* * * * * *
10410021 AAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTTCAAACATTCCATGCTCGGGAAATCACA
734 AAAGTATTC-A-ATAATCCATTCCTTCTAGAAATTTTTCAAACATTCCATGCTC-GAAAATCCCA
* * * *
10410086 TAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAATAACTTATTT
796 TCATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
* * * *
10410151 ATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTTATTTACG
860 ACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT--CAAACTT-TTCAC-
* *
10410216 TGAGTATTGTTTCTCTCCTA-GTTCTTGGACGAAC
920 -GA-T-TTGTTTCTCTCTTAGGTTCTTGAACGAAC
* ** ** ** * ** * ** * *
10410250 TT-ACG-A-A--C-TTGTCAAAAACTTATTTACGTA-A--GAAT--T-G---TTTCTC-TTAGTT
1 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCA-TT
* * ** * * * ** ** * *
10410299 CTGG-GATGAACA-TCCG-AACTTCT-CAAAC-TTTTACGA-T-TTCTTTTTTATA-TTCGGTTC
65 -TGGTGA-AAATAGTTTGTCA-TTTTGTAAACATTTTA-GACTGTTAATTAATA-ACTT-AGTTA
** * * ** * * ** *
10410356 CAGAAAGTATTCAAGATGATC-CATTGTTTCTAG-CAATTTTTCGAACATTCCATGCTCAGGAAA
124 C-GTGAGAATT---GTTTCTCTC-TTGGTTCTGGACAAACTTTCGAAC--T---TGATCA--AAA
* * * * * * ** * ***** *
10410419 TCGCATAATTTGGTCT-A-AATAGTTTGTCTTTTGG----TAAAC-AAGTTTTGGTCCTTGAATT
177 --AC-TTATTT--ACTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTTCCAAACTTG--TC
* * * * * *
10410477 AAAAACTTATTTATGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAA
234 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * * **
10410542 AACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAAC
299 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--AAAC
* * * * *
10410607 TTATTTACGTAAGAATTGTTTCTCT--CTT-GGTTCTTGGAAGAACATCCGAACTTGTCAA-ACT
362 -T-TTTA--T-A-ATTTCTTT-TATAACTTCGGTTC----CAGAA-A---GTA--T-TCAAGA-T
** * * * *
10410668 TTTACAGGTTCTTT-TA-TAACTTCAGTTCCAAAAAGTATTCATAATCCATTCCTTCTGGAAATT
408 GATCCA--TTCTTTCTAGTAA-TT---TTTC---AA--A--CAT--TCCA-TGC-TCAGGAAA--
** * * * *
10410731 TTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
454 TCACATA-ATT---TGGTC--TAA----AT-A----GT-T---T-G----TCTTTTTGTAAACAA
* * * * *
10410796 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGTATGA
495 GTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGA
* * * * ***
10410859 ACTTTCAAACTTGT--CAAACTTTCACGATTT-CTTTTA-TAACTTAGGTTC-CTTAAAGTATTC
559 ACTTTCAAACTTGTGAAAAAC-TT----ATTTAC-GTGAGT-A-TT-GTTTCTCTCCTAG--TTC
** * * * * * * * **** *
10410919 AAGAAGATCCATTCCCTTAAAAAAATT-TC-CAAACATTCAATCCT-CG-AAAAATCACATC-AT
613 TTG--GA-CGA---ACTT-ACAAACTTGTCAAAAAC-TT--AT-TTACGTAAGAATTGTTTCTCT
* ** ** * * ** *
10410979 -TTGG----T-GAA-AATAGTTTGTCATTTTGT-AAACAAGTTTTAGACTGTTAATTAATAACTT
667 CTTGGTTCTTGGAAGAACA-TCCG--AACTTGTCAAAC---TTTTACA-GGTTCTTTTATAACTT
* *** * ** ** ** * ** * *
10411036 -AGTTAC-GTGAGAATT-GTTTCTCTC-TTGGTTCTTGGACAAACTTCCGAAC--T---TG-TC-
725 CAGTTCCAAAAAGTATTCAATAATC-CATTCCTTC-TAGA-AATTTTTCAAACATTCCATGCTCG
* * * * * * * ** *** ** *
10411090 AAAA--AC-TTATTT--ACATGAGAATTGTTTCTCTCTTGGT--TCTTG-GACGAACTTCCAAAC
787 AAAATCCCATCATTTGGTC-T-A-AATAGTTTGTCT-TTTGTAAACAAGTTTTGGTCTT-TAAA-
* * * *
10411147 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTG
846 -T-T-AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTG
* * *
10411212 TCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GGTTCTTGGACGAAC
907 TC--AAAC-T-TTT-C--ACGATTTGTTTCTCTCTTAGGTTCTTGAACGAAC
* * ** * ** ** * ** ** ** * *
10411263 ATC-CGAACTTGTCAAACTTTTATA-ATTTCTTTTATAAC-TTCTGTTCC-AGAAAGTATTCA-A
1 TTCAAGAAGAT-CCATTCCCTTAAACAAAT-TTCCA-AACATTC-AATCCTCGAAA--AATCACA
* * ** * ** * ** ** *
10411323 -GA--TGAT-CCACTCTTTCTAGTAATTTT-TCAAACATTCCATG-CTCGGGAAATCACATAA-T
60 TCATTTGGTGAAAATAGTT-T-GTCATTTTGT-AAACATTTTA-GACT--GTTAATTA-ATAACT
* * * * * ** ** * ** * *
10411381 TTGGT-C-T-A-AATAGTTTGTCT-TT--TTGTAAACAAGTTTTGGTCCTTGAATTAATAACTTA
118 TAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTGGACAAACTTTCGAACTTG-ATCAAAAACTTA
* * * * *
10411439 TTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTTATTT
182 TTTA-CTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
* * * * *
10411504 ACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAAACTTATTTACG
246 ACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACG
* * * * **
10411569 TAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTCTCAAACTTTTACGATTTCTT
311 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTT
* * * *
10411632 TTTTAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTTCGAACATTC
376 TTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTC
* *
10411697 CATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGTTTTGGTCCT
441 CATGCTCAGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCT
* *
10411762 TGAATTAAAAACTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTT
506 TGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTT
* * * *
10411827 GTGAAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTT-CAAAACTTGT
571 GTGAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTAC-AAACTTGT
*
10411891 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
635 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAA
*
10411956 ACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTGGA
700 ACTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC-A-ATAATCCATTCCTTCTAGA
10412021 AATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
763 AATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTC-TTTTGTAA
*
10412086 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTA
827 ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGA
* * * * *
10412150 TGAACTTTCAAACTTGTCAAAC-TTTCACGATTTCTTT-TATAACTTAGGTTCCTT-AAAGTA-
891 CGAACTTTCAAACTTGTCAAACTTTTCACGATTTGTTTCTCT--CTTAGGTT-CTTGAACGAAC
*
10412210 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCTAAAAATCACATCATTT
1 TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTT
10412275 GGTGAAAATAGTTTGTCATTTTGTAAACAAGTTTTAGACTGTTAATTAATAACTTAGTTACGTGA
66 GGTGAAAATAGTTTGTCATTTTGTAAAC-A-TTTTAGACTGTTAATTAATAACTTAGTTACGTGA
*
10412340 GAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG-TCAAAAACTTATTTACATGAGA
129 GAATTGTTTCTCTCTTGGTTC-TGGACAAACTTTCGAACTTGATCAAAAACTTATTTAC-TGAGA
10412404 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
192 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATT
* *
10412469 GTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
257 GTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
*
10412534 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCT
322 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCG
*
10412599 GTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTTCAAACATTCCATGCTC-GGA
387 GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCTCAGG-
*
10412663 AAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTAGTAAACAAGTTTTGGTCCTTGAATTAAT
451 AAATCACATAATTTGGTCTAAATAGTTTGTCTTTTT-GTAAACAAGTTTTGGTCCTTGAATTAAA
*
10412728 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAAC
515 AACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAAC
* *
10412793 TTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTCAAAAACTTA
580 TTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTA
*
10412858 TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACTA
645 TTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC-A
* *
10412923 -TTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCG
709 GGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC-A-ATAATCCATTCCTTCTAGAAATTTTTCA
10412987 AACATTCCATGCTCGAAAAATCCCATCATTTGGT
772 AACATTCCATGCTCG-AAAATCCCATCATTTGGT
10413021 TTCTTATAGT
Statistics
Matches: 3606, Mismatches: 713, Indels: 730
0.71 0.14 0.14
Matches are distributed among these distances:
941 1 0.00
942 10 0.00
943 26 0.01
944 35 0.01
945 80 0.02
946 56 0.02
947 57 0.02
948 56 0.02
949 42 0.01
950 45 0.01
951 301 0.08
952 277 0.08
953 727 0.20
954 266 0.07
955 236 0.07
956 251 0.07
957 318 0.09
958 40 0.01
959 8 0.00
960 11 0.00
961 11 0.00
962 21 0.01
963 13 0.00
964 13 0.00
965 6 0.00
967 3 0.00
968 1 0.00
969 2 0.00
970 8 0.00
971 3 0.00
973 5 0.00
974 1 0.00
975 4 0.00
977 2 0.00
978 5 0.00
979 12 0.00
980 2 0.00
981 8 0.00
982 5 0.00
983 6 0.00
985 3 0.00
986 2 0.00
987 1 0.00
988 2 0.00
989 2 0.00
990 3 0.00
991 1 0.00
992 4 0.00
994 9 0.00
995 4 0.00
996 12 0.00
997 6 0.00
998 2 0.00
999 4 0.00
1000 2 0.00
1002 3 0.00
1003 4 0.00
1004 2 0.00
1005 6 0.00
1006 2 0.00
1007 7 0.00
1008 5 0.00
1009 9 0.00
1010 8 0.00
1011 26 0.01
1012 20 0.01
1013 157 0.04
1014 33 0.01
1015 87 0.02
1016 13 0.00
1017 18 0.00
1018 12 0.00
1019 22 0.01
1020 13 0.00
1021 24 0.01
1022 10 0.00
1023 15 0.00
1024 39 0.01
1025 13 0.00
1026 15 0.00
1027 9 0.00
1028 8 0.00
1029 8 0.00
1030 7 0.00
1031 6 0.00
1032 10 0.00
1033 4 0.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (951 bp):
TTCAAGAAGATCCATTCCCTTAAACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTT
GGTGAAAATAGTTTGTCATTTTGTAAACATTTTAGACTGTTAATTAATAACTTAGTTACGTGAGA
ATTGTTTCTCTCTTGGTTCTGGACAAACTTTCGAACTTGATCAAAAACTTATTTACTGAGAATTG
TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
CTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTC
TCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATAATTTCTTTTATAACTTCGGTTC
CAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCTCAGGAAATC
ACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTA
TTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAAAACTTATTT
ACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACAAACTTGTCAAAAACTTATTTACG
TAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTACAGGTTCTT
TTATAACTTCAGTTCCAAAAAGTATTCAATAATCCATTCCTTCTAGAAATTTTTCAAACATTCCA
TGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTTGGTCTTTAAA
TTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
ACTTTTCACGATTTGTTTCTCTCTTAGGTTCTTGAACGAAC
Found at i:10409167 original size:338 final size:336
Alignment explanation
Indices: 10408508--10409581 Score: 1559
Period size: 338 Copynumber: 3.2 Consensus size: 336
10408498 CGAACTTGTC
* * * *
10408508 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * * *
10408573 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAAC-TTCAAACTTGTCAAAAAC
*
10408638 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * *
10408703 TAATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTT
195 -CATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
10408768 CAAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
259 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGT
10408833 TTTGGTCCTTGAATT
322 TTTGGTCCTTGAATT
* * *
10408848 AATAACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
*
10408913 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTT-CAAACTTGTCAAAAAC
* * * *
10408978 TTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTCTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10409041 CGATTTCTTTTTTAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTGTTTCTAGCAATTTTT
195 C-ATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
* *
10409106 CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGT
259 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTT-GTAAACAAGT
10409171 TTTGGTCCTTGAATT
322 TTTGGTCCTTGAATT
* * *
10409186 AAAAACTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * *
10409251 AACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTC-AAACTTGTCAAAAAC
10409316 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10409381 CAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC---ATAATCCATTCCTTCTGGAAATTTTT
195 CA-TTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
* * *
10409443 CAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
259 CAAACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTT
* *
10409508 TTGGTCTTTAAATT
323 TTGGTCCTTGAATT
* *
10409522 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
10409582 CAAACTTTCA
Statistics
Matches: 664, Mismatches: 61, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
335 29 0.04
336 78 0.12
337 45 0.07
338 305 0.46
339 6 0.01
340 201 0.30
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (336 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
ATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTTCA
AACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTTG
GTCCTTGAATT
Found at i:10409285 original size:62 final size:61
Alignment explanation
Indices: 10409186--10409374 Score: 229
Period size: 62 Copynumber: 3.0 Consensus size: 61
10409176 TCCTTGAATT
* *
10409186 AAAAACTTATTTAT-GTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTT-TCGTAAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * *
10409248 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10409310 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10409372 AAA
1 AAA
10409375 CTTTTACAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
61 8 0.07
62 99 0.91
63 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10409755 original size:215 final size:212
Alignment explanation
Indices: 10409310--10409801 Score: 627
Period size: 215 Copynumber: 2.3 Consensus size: 212
10409300 AAAACTTGTC
* *
10409310 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* * * ** *
10409375 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCATAATCCATTCCTTCTGGAAATT
66 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCCTCTAAAAAAT
* * * * *
10409440 TTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
131 TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
* *
10409505 GTTTTGGTCTTTAAATT
196 GTTTTAGACTTTAAATT
* * * * *
10409522 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* **
10409586 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCT-TAA
66 CTTTCACAG-GTTCTTTTATAACTTCA-GTTCCAAAAAGTATTC-A-AA-ATCCATTCCCTCTAA
*
10409648 ACAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
126 A-AAATTTCCAAACATTCAATCCTCG-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10409713 TAAACAAGTTTTAGACTGTT-AATT
189 TAAACAAGTTTTAGACT-TTAAATT
* *
10409737 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
10409801 A
65 A
10409802 AACTTATTTA
Statistics
Matches: 239, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
210 2 0.01
211 63 0.26
212 29 0.12
213 3 0.01
214 30 0.13
215 81 0.34
216 31 0.13
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (212 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCCTCTAAAAAAT
TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
GTTTTAGACTTTAAATT
Found at i:10409837 original size:62 final size:62
Alignment explanation
Indices: 10409740--10409987 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10409730 GTTAATTAAT
* * *
10409740 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10409802 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10409864 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10409926 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10409988 CTTTTATAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10410240 original size:62 final size:60
Alignment explanation
Indices: 10410142--10410309 Score: 210
Period size: 62 Copynumber: 2.7 Consensus size: 60
10410132 TTGAATTAAT
* * * * *
10410142 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATT-GTT-TCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
* *
10410204 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCT--TAGTTCTTGGACGAACTTACAAACTTGTCAAA
* * *
10410266 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAAC
10410310 ATCCGAACTT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
60 18 0.19
61 3 0.03
62 72 0.77
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10410459 original size:338 final size:336
Alignment explanation
Indices: 10409799--10410872 Score: 1543
Period size: 338 Copynumber: 3.2 Consensus size: 336
10409789 CGAACTTGTC
* * * *
10409799 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * * *
10409864 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAAC-TTCAAACTTGTCAAAAAC
*
10409929 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * *
10409994 TAATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTT
195 -CATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
10410059 CAAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
259 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGT
10410124 TTTGGTCCTTGAATT
322 TTTGGTCCTTGAATT
* * *
10410139 AATAACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
*
10410204 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTT-CAAACTTGTCAAAAAC
* * * *
10410269 TTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTCTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * *
10410332 CGATTTCTTTTTTATA-TTCGGTTCCAGAAAGTATTCAAGATGATCCATTGTTTCTAGCAATTTT
195 C-ATTTCTTTTATA-ACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTT
* *
10410396 TCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAG
258 TCAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTT-GTAAACAAG
10410461 TTTTGGTCCTTGAATT
321 TTTTGGTCCTTGAATT
* * * *
10410477 AAAAACTTATTTATGTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * *
10410542 AACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTC-AAACTTGTCAAAAAC
10410607 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10410672 CAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTC---ATAATCCATTCCTTCTGGAAATTTTT
195 CA-TTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
* * *
10410734 CAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
259 CAAACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTT
* *
10410799 TTGGTCTTTAAATT
323 TTGGTCCTTGAATT
* *
10410813 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
10410873 CAAACTTTCA
Statistics
Matches: 662, Mismatches: 61, Indels: 27
0.88 0.08 0.04
Matches are distributed among these distances:
335 28 0.04
336 78 0.12
337 45 0.07
338 303 0.46
339 8 0.01
340 200 0.30
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (336 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
ATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTTCA
AACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTTG
GTCCTTGAATT
Found at i:10410563 original size:62 final size:61
Alignment explanation
Indices: 10410477--10410665 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 61
10410467 TCCTTGAATT
* * *
10410477 AAAAACTTATTTAT-GTGAGAATTGTTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTT-TCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * *
10410539 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10410601 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
1 AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10410663 AAA
1 AAA
10410666 CTTTTACAGG
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
61 4 0.04
62 103 0.94
63 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (61 bp):
AAAAACTTATTTTCGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10411046 original size:215 final size:212
Alignment explanation
Indices: 10410601--10411092 Score: 627
Period size: 215 Copynumber: 2.3 Consensus size: 212
10410591 AAAACTTGTC
* *
10410601 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* * *** *
10410666 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCATAATCCATTCCTTCTGGAAATT
66 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCTTCAAAAAAAT
* * * * *
10410731 TTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
131 TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
* *
10410796 GTTTTGGTCTTTAAATT
196 GTTTTAGACTTTAAATT
* * * * *
10410813 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* **
10410877 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGAAGATCCATTCCCTT-AA
66 CTTTCACAG-GTTCTTTTATAACTTCA-GTTCCAAAAAGTATTC-A-AA-ATCCATT-CCTTCAA
*
10410939 AAAAATTTCCAAACATTCAATCCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTG
125 AAAAATTTCCAAACATTCAATCCTCG-AAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10411004 TAAACAAGTTTTAGACTGTT-AATT
189 TAAACAAGTTTTAGACT-TTAAATT
* *
10411028 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
10411092 A
65 A
10411093 AACTTATTTA
Statistics
Matches: 239, Mismatches: 31, Indels: 16
0.84 0.11 0.06
Matches are distributed among these distances:
210 2 0.01
211 63 0.26
212 29 0.12
213 1 0.00
214 28 0.12
215 85 0.36
216 31 0.13
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (212 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAAATCCATTCCTTCAAAAAAAT
TTCCAAACATTCAATCCTCGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAA
GTTTTAGACTTTAAATT
Found at i:10411128 original size:62 final size:62
Alignment explanation
Indices: 10411031--10411278 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10411021 GTTAATTAAT
* * *
10411031 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10411093 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10411155 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10411217 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10411279 CTTTTATAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10411531 original size:62 final size:60
Alignment explanation
Indices: 10411433--10411600 Score: 210
Period size: 62 Copynumber: 2.7 Consensus size: 60
10411423 TTGAATTAAT
* * * * *
10411433 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATT-GTT-TCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
* *
10411495 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCT--TAGTTCTTGGACGAACTTACAAACTTGTCAAA
* * *
10411557 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAAC
10411601 ATCCGAACTT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
60 18 0.19
61 3 0.03
62 72 0.77
ACGTcount: A:0.26, C:0.15, G:0.18, T:0.40
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCTTAGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10411740 original size:338 final size:337
Alignment explanation
Indices: 10411090--10412166 Score: 1595
Period size: 338 Copynumber: 3.2 Consensus size: 337
10411080 CGAACTTGTC
* * * *
10411090 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * * *
10411155 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAAC-TTCAAACTTGTCAAAAAC
*
10411220 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * *
10411285 TAATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATTTTT
195 -CATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
10411350 CAAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
259 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
10411415 TTTGGTCCTTGAATT
323 TTTGGTCCTTGAATT
* * *
10411430 AATAACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
*
10411495 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTT-CAAACTTGTCAAAAAC
* * * *
10411560 TTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTCTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * *
10411623 CGATTTCTTTTTTAAATTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTT
195 C-ATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
* * *
10411688 CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGGTAAACAAGT
259 CAAACATTCCATGCTC-GGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
10411753 TTTGGTCCTTGAATT
323 TTTGGTCCTTGAATT
* * *
10411768 AAAAACTTATTTATGTGAGAATTGGTTTTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
* * * *
10411833 AACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTC-AAACTTGTCAAAAAC
*
10411898 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTA
* * * * *
10411963 CAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTGGAAATTTTT
195 CA-TTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTT
* * * *
10412028 CAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
259 CAAACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
* *
10412093 TTGGTCTTTAAATT
324 TTGGTCCTTGAATT
* *
10412107 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGT
10412167 CAAACTTTCA
Statistics
Matches: 667, Mismatches: 63, Indels: 16
0.89 0.08 0.02
Matches are distributed among these distances:
337 1 0.00
338 338 0.51
339 87 0.13
340 241 0.36
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (337 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTCAAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAACTTTTAC
ATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGAAATTTTTCA
AACATTCCATGCTCGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
GGTCCTTGAATT
Found at i:10411867 original size:62 final size:61
Alignment explanation
Indices: 10411768--10411956 Score: 238
Period size: 62 Copynumber: 3.0 Consensus size: 61
10411758 TCCTTGAATT
*
10411768 AAAAACTTATTTAT-GTGAGAATTGGTTT-TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTT-TCGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* * * * *
10411830 AAAAACTTATTTTCGTTAGTATTGTTTCTCTCCTGGTTCTTGTACGAACTTCAAAACTTGTC
1 AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
* * *
10411892 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
1 AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10411954 AAA
1 AAA
10411957 CTTTTACAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
61 8 0.07
62 99 0.91
63 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.17, T:0.40
Consensus pattern (61 bp):
AAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10412306 original size:215 final size:215
Alignment explanation
Indices: 10411892--10412386 Score: 653
Period size: 215 Copynumber: 2.3 Consensus size: 215
10411882 AAAACTTGTC
*
10411892 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* * **
10411957 CTTTTACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTGGAA
66 CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCCTCTAAAA
* * * * * * *
10412022 ATTTTTCAAACATTCCATGCTCGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
131 AATTTCCAAACATTCAATCCTCAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
10412087 CAAGTTTTGGTCT-TTAAATT
196 CAAGTTTTAGACTGTT-AATT
* * * * *
10412107 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGTATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
* **
10412171 CTTTCAC-GATTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGA-AGATCCATTCCCT-TA
66 CTTTCACAG-GTTCTTTTATAACTTCA-GTTCCAAAAAGTATTCAAGATA-ATCCATTCCCTCTA
*
10412232 AACAAATTTCCAAACATTCAATCCTCTAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTT
128 AA-AAATTTCCAAACATTCAATCCTC-AAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10412297 GTAAACAAGTTTTAGACTGTTAATT
191 GTAAACAAGTTTTAGACTGTTAATT
* *
10412322 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
10412386 A
65 A
10412387 AACTTATTTA
Statistics
Matches: 242, Mismatches: 30, Indels: 15
0.84 0.10 0.05
Matches are distributed among these distances:
213 5 0.02
214 96 0.40
215 110 0.45
216 31 0.13
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CTTTCACAGGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCCTCTAAAA
AATTTCCAAACATTCAATCCTCAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTAGACTGTTAATT
Found at i:10412422 original size:62 final size:62
Alignment explanation
Indices: 10412325--10412572 Score: 406
Period size: 62 Copynumber: 4.0 Consensus size: 62
10412315 GTTAATTAAT
* * *
10412325 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10412387 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10412449 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * *
10412511 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
10412573 CTTTTATAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
Found at i:10412826 original size:62 final size:62
Alignment explanation
Indices: 10412728--10412913 Score: 246
Period size: 62 Copynumber: 3.0 Consensus size: 62
10412718 TTGAATTAAT
* * * * *
10412728 AACTTATTTATGTGAGAATTGGTTCTCTGTTGGTTCTTGGACGAACTTTCAAACTTGTGAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAA
* * * * *
10412790 AACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAA
* * * *
10412852 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAA
10412914 CTTTTACTAT
Statistics
Matches: 107, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 107 1.00
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACAAACTTGTCAAA
Found at i:10413080 original size:79 final size:79
Alignment explanation
Indices: 10412949--10413097 Score: 221
Period size: 79 Copynumber: 1.9 Consensus size: 79
10412939 AGTTCCAAAA
* * * *
10412949 AGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATC
1 AGTATTCAAGATAATCCATTCCTTCTAGAAAATTTCCAAACATTCCATGCTCGAAAAATCACATC
10413014 ATTTGGTTTCTTAT
66 ATTTGGTTTCTTAT
*
10413028 AGTATTCAAGA-AGATCCATTCCTT-TAAGAAAATTTCCAAACATTCCATGCTCGAGAAATCACA
1 AGTATTCAAGATA-ATCCATTCCTTCT-AGAAAATTTCCAAACATTCCATGCTCGAAAAATCACA
10413091 TCATTTG
64 TCATTTG
10413098 TTCAAAATAG
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
78 2 0.03
79 61 0.97
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (79 bp):
AGTATTCAAGATAATCCATTCCTTCTAGAAAATTTCCAAACATTCCATGCTCGAAAAATCACATC
ATTTGGTTTCTTAT
Found at i:10413226 original size:62 final size:62
Alignment explanation
Indices: 10413147--10413394 Score: 390
Period size: 62 Copynumber: 4.0 Consensus size: 62
10413137 TTTAGTTAAT
* * *
10413147 AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10413209 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10413271 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTGCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10413333 AACTTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10413395 CTTTTACGAT
Statistics
Matches: 172, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
61 1 0.01
62 171 0.99
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10413651 original size:51 final size:52
Alignment explanation
Indices: 10413596--10413761 Score: 131
Period size: 51 Copynumber: 3.0 Consensus size: 52
10413586 TGGACGAACT
*
10413596 TTTGAAC-TTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTC
1 TTTGAACATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
* * ** * * *
10413647 TTTG-ACGAATAT-CCAAACCTGTTCACGTGAGAATTGTTTCTCTCTTGGTTC
1 TTTGAAC-ATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
*
10413698 TTGCATGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
1 TT---TGAA----C--A-TTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
10413760 TT
1 TT
10413762 GGCGAAATTT
Statistics
Matches: 86, Mismatches: 16, Indels: 15
0.74 0.14 0.13
Matches are distributed among these distances:
50 2 0.02
51 39 0.45
52 2 0.02
54 2 0.02
55 1 0.01
59 1 0.01
60 1 0.01
61 2 0.02
62 36 0.42
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.43
Consensus pattern (52 bp):
TTTGAACATTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
Found at i:10413803 original size:61 final size:62
Alignment explanation
Indices: 10413671--10413908 Score: 313
Period size: 62 Copynumber: 3.9 Consensus size: 62
10413661 AAACCTGTTC
* * * *
10413671 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
10413733 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTCAAACTTGTCAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
* * * *
10413794 ACGTGAGAATTGATTCTCTC-TGTGTTATTGGAC-AAACATTCAAACTTGACAAAAACTTATTT
1 ACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAAA-TTTCAAACTTGTCAAAAACTTATTT
* * * *
10413856 ATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCCGAACTTGTCAAA
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTTCAAACTTGTCAAA
10413909 CTTTTACGAT
Statistics
Matches: 155, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
60 2 0.01
61 56 0.36
62 92 0.59
63 4 0.03
64 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (62 bp):
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTTCAAACTTGTCAAAAACTTATTT
Found at i:10413812 original size:123 final size:124
Alignment explanation
Indices: 10413671--10413908 Score: 329
Period size: 123 Copynumber: 1.9 Consensus size: 124
10413661 AAACCTGTTC
* * ** * * *
10413671 ACGTGAGAATTGTTTCTCTCT-TGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTTAC
1 ACGTGAGAATTGATTCTCTCTGT-GTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTAC
* *
10413735 GTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAA-ATTTCAAACTTGTCAAAAACTTATTT
65 GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCCAAACTTGTCAAAAACTTATTT
* *
10413794 ACGTGAGAATTGATTCTCTCTGTGTTATTGGACAAACATTCAAACTTGACAAAAACTTATTTATG
1 ACGTGAGAATTGATTCTCTCTGTGTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTACG
*
10413859 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
66 TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10413909 CTTTTACGAT
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
123 81 0.81
124 18 0.18
125 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (124 bp):
ACGTGAGAATTGATTCTCTCTGTGTTATTGCACAAACATTCAAACTTGACAAAAACTTATTTACG
TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTT
Found at i:10414126 original size:62 final size:61
Alignment explanation
Indices: 10414061--10414248 Score: 272
Period size: 62 Copynumber: 3.0 Consensus size: 61
10414051 CCTTGAATTA
* * *
10414061 AAAAAGTTATTTACGTGA-AATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
*
10414122 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTC
* *
10414184 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTTC-TGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TTCTTGGACGAAC-TTCGAACTTGTC
10414246 AAA
1 AAA
10414249 CTTTTACGAT
Statistics
Matches: 116, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
61 16 0.14
62 95 0.82
63 5 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10414128 original size:514 final size:514
Alignment explanation
Indices: 10413156--10414169 Score: 1716
Period size: 514 Copynumber: 2.0 Consensus size: 514
10413146 TAACTTACTT
*
10413156 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACG
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
*
10413221 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAACTTATTTACGTGA
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
* * * * *
10413286 GAATTGTTTCTCTCTTTGTTCTTGGACGAACTTGCAAACTTGTCAAAAACTTATTTCAATAAGAA
131 GAATTGATTCTCTCTGTGTTATTGGACAAACTTGCAAACTTGACAAAAACTTATTTCAATAAGAA
10413351 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
196 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
*
10413416 CTTCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCGAACATTCCATGCT
261 CTTCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCT
* *
10413481 CGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
326 CGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
* *
10413546 AAAAACTTATTTACGTAAGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTGAAA
391 AAAAACTTATTTACGT-AGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
*
10413611 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAATATCCAAACCTGTTC
455 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAATATCCAAACCTGTTC
*
10413671 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCATGAACTTTCGAACTTGTCAAAAACTTATTTACG
1 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
* *
10413736 TGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATTTCAAACTTGTCAAAAACTTATTTACGTGA
66 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
*
10413800 GAATTGATTCTCTCTGTGTTATTGGACAAACATT-CAAACTTGACAAAAACTTATTT-ATGTAAG
131 GAATTGATTCTCTCTGTGTTATTGGACAAAC-TTGCAAACTTGACAAAAACTTATTTCA-ATAAG
10413863 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
194 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
*
10413928 AACTTCGGTTCCAGA-AAGTATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCAT
259 AACTTCGATTCCAGAGAA-TATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCAT
*
10413992 GCTCGGGAAATCACATAATTTAGTCTAAATAGTTTGTCT-TTTGGTAAACAAGTTTTGGTCCTTG
323 GCTCGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTT-GTAAACAAGTATTGGTCCTTG
* *
10414056 AATTAAAAAAGTTATTTACGT-GAAATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTG
387 AATT-AAAAACTTATTTACGTAGAAA-TGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTG
* *
10414120 TCAAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
450 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAA
10414170 CTTACGAACT
Statistics
Matches: 470, Mismatches: 23, Indels: 13
0.93 0.05 0.03
Matches are distributed among these distances:
513 10 0.02
514 352 0.75
515 108 0.23
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (514 bp):
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCGAACTTGTCAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTATCAAAAACTTATTTACGTGA
GAATTGATTCTCTCTGTGTTATTGGACAAACTTGCAAACTTGACAAAAACTTATTTCAATAAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA
CTTCGATTCCAGAGAATATTCAAGATGATCCATTCTTTCTAGTAATTTTTCAAACATTCCATGCT
CGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTCTTTGTAAACAAGTATTGGTCCTTGAATT
AAAAACTTATTTACGTAGAAATGGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAATATCCAAACCTGTTC
Found at i:10414397 original size:339 final size:339
Alignment explanation
Indices: 10413721--10414526 Score: 1174
Period size: 339 Copynumber: 2.4 Consensus size: 339
10413711 CGAACTTGTC
*
10413721 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG-CGAAATT-TCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AAACTTGTCAA
* * * *
10413784 AAACTTATTTACGTGAGAATTGATTCTCTC-TGTGTTATTGGACAAACATTCAAACTTGACAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAAC-TTCAAACTTGTCAAAA
*
10413848 ACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
128 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* *
10413913 TACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATTT
193 TACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATTT
*
10413978 TTCAAACATTCCATGCTCGGGAAATCACATAATTTAGTCTAAATAGTTTGTCTTTTGGTAAACAA
258 TTCAAACATTCCATGCTCAGGAAATCACATAATTTAGTCTAAATAGTTTGTCTTTTGGTAAACAA
10414043 GTTTTGGTCCTTGAATT
323 GTTTTGGTCCTTGAATT
* * * *
10414060 AAAAAAGTTATTTACGTGA-AATTGGTTCTCTCTTTGTTCTTGGACGAACTTCTGAACTTGTCAA
1 -AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAA
* *
10414124 AAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CAAACTTGTCAAAAA
10414189 CTTATTTACGTAAGAATTGTTTCTCTCTTGGCTTC-TGGACGAACATCCGAACTTGTCAAACTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * *
10414253 TACGATTT-TTTTTTAACTTTGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGATTT
193 TACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATTT
* * * * * **
10414317 TTCTAACATTCCATGCTCAGGAAATCGCATAATTTTGTTTAAATAGTTTTTCTTTTTTTAAACAA
258 TTCAAACATTCCATGCTCAGGAAATCACATAATTTAGTCTAAATAGTTTGTCTTTTGGTAAACAA
*
10414382 GTTTTGGTTCTTGAATT
323 GTTTTGGTCCTTGAATT
* * * *
10414399 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCCTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* * * * * *
10414464 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCAAACTTGTCAAAA
10414527 TTTTACGATT
Statistics
Matches: 417, Mismatches: 42, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
338 17 0.04
339 240 0.58
340 154 0.37
341 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATTTTTC
AAACATTCCATGCTCAGGAAATCACATAATTTAGTCTAAATAGTTTGTCTTTTGGTAAACAAGTT
TTGGTCCTTGAATT
Found at i:10414716 original size:278 final size:278
Alignment explanation
Indices: 10414122--10415082 Score: 1353
Period size: 278 Copynumber: 3.5 Consensus size: 278
10414112 TGAACTTGTC
* *
10414122 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
10414187 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTTC-TGGACGAACATCCGAACTTGTCAAACT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGG-TTCTTGGACGAACATCCGAACTTGTCAAAAT
* * *
10414251 TTTACGATTT-TTTTTTAACTTTGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
* * * *
10414315 TTTTCTAACATTCCATGCTCAGG-AAATCGCATAATTTTGTTTAAATAGTTTTTCTTTTTTTAAA
195 TTTTCGAACATTCCATGCT-AGGAAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTTTAAA
10414379 CAAGTTTTGGT-TCTTGAATT
259 CAAGTTTTGGTCT-TTGAATT
* * * *
10414399 AAAAACTTATTTACGTGAGAGTTGTTTCTCTCCTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10414464 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAAATT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAATT
** * * *
10414529 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * * * *
10414594 TTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAACA
196 TTTCGAACATTCCATGCTAGGAAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTTTAAACA
*
10414659 AGTTTTGGTCTTTAAATT
261 AGTTTTGGTCTTTGAATT
*
10414677 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAATATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAA
* * * *
10414741 AAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTCAAACT
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAT
* * *
10414806 TTTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
* *
10414871 TTTTCGAACACTCCATGCTCA-GAAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTTTAAA
195 TTTTCGAACATTCCATGCT-AGGAAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTTTAAA
*
10414935 CAAGTTTTGGTCCTTGAATT
259 CAAGTTTTGGTCTTTGAATT
* * * *
10414955 AAAAACTTATTTATGTGAGAATTAG-TTCTCTCTCGGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * * *
10415019 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAT-TCAAAA
65 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT-TGTCAAAA
10415083 ACTTATTTAC
Statistics
Matches: 601, Mismatches: 74, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
276 3 0.00
277 129 0.21
278 463 0.77
279 6 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAATT
TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTAGGAAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTTTAAACA
AGTTTTGGTCTTTGAATT
Found at i:10414749 original size:62 final size:62
Alignment explanation
Indices: 10414677--10414803 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
10414667 TCTTTAAATT
* * * * *
10414677 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
*
10414739 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
10414801 AAA
1 AAA
10414804 CTTTTACTAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCAGAACTTGTC
Found at i:10415141 original size:60 final size:62
Alignment explanation
Indices: 10414955--10415203 Score: 326
Period size: 62 Copynumber: 4.0 Consensus size: 62
10414945 TCCTTGAATT
* * * * *
10414955 AAAAACTTATTTATGTGAGAATTAG-TTCTCTCTCGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10415017 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAT-TC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT-TGTC
* ** *
10415079 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GTTCTTGGATGTTCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10415139 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10415201 AAA
1 AAA
10415204 CTTTTACGAT
Statistics
Matches: 165, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
59 1 0.01
60 51 0.31
61 5 0.03
62 107 0.65
63 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10415174 original size:122 final size:124
Alignment explanation
Indices: 10414955--10415187 Score: 344
Period size: 122 Copynumber: 1.9 Consensus size: 124
10414945 TCCTTGAATT
* * * *
10414955 AAAAACTTATTTATGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10415020 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTATTC
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTATTC
** ****
10415079 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTTGTTCTTGGATGTTCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAAACATCCAAACTTGTCAAA
*
10415142 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
10415188 ATCCCAATTT
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
122 72 0.74
123 3 0.03
124 22 0.23
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (124 bp):
AAAAACTTATTTACGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAAACATCCAAACTTGTCAAA
AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTATTC
Found at i:10415376 original size:400 final size:402
Alignment explanation
Indices: 10414677--10417092 Score: 1953
Period size: 400 Copynumber: 6.0 Consensus size: 402
10414667 TCTTTAAATT
* *
10414677 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * **
10414742 AACTTATTTACGTAAGAATTATTTCTCTCTTGGCTCTTGGACGAACATCAGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * *
10414807 TTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* * * * * *
10414872 TTTCGAACACTCCATGCTCAGAAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTTTAAACA
196 TTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* * * *
10414937 AGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTAGTTCTCTCTCGGTTCTTGGACAA
261 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
*
10415002 ACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
326 ACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
10415067 TCCAAAC-TATTC
391 TCCAAACTTA-TC
* ** *
10415079 AAAAACTTATTTACGTGAGAATTGTTTCTCT-TT-GTTCTTGGATGTTCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
10415142 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* *
10415207 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCACTCTTTCTAGTAATT
131 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
* *
10415272 TTTCAAACATTCCATGCTCGGGAAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTGAACA
196 TTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
*
10415337 AGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
261 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
* * * * *
10415402 ACTTTCGAACTTGTGAAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACT
326 ACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * *
10415467 TACGAACTTGTC
391 TCCAAACTTATC
* *
10415479 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** ** ** * * * **
10415542 AAC-T-TTTAC----G-ATT-TCTT-T-TCTAAGTTCAGTTCCAAAAAGTAT-TCAAGATAATCC
66 AACTTATTTACGTAAGAATTGT-TTCTCTCTTGGTTC--TTGGACGAA-CATCCCAA-CTTGT-C
** * ** ** * * * ** *
10415596 ATTCCTTCTA-GAAAT-TTTTCGAACATTCCATGCT-C-GAAA-AATCCCATCATTTGGCTCC-T
125 A-AACTTTTACGATTTCTTTTATAAC-TT-C-TGTTCCAGAAAGTAT-TCA--AGAT-GATCCAT
* * * * *
10415655 TAAAGTATTCAAGAAGATTCATTCCTTTAAGCAAATTTCCAAACATTCCATGCTCGAGAAATCAC
182 T---CT-TTC---TAG---CA----ATT-------TTT-CAAACATTCCATGCTCGGGAAATCGC
* * * * * * * * * *
10415720 ATCATTTGTTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTTGGACTTTTAGTTAATAACTTAG
225 ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG-TTTTGGTCCTTGAATTAAAAACTTAT
*
10415785 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTA
289 TTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTA
*
10415850 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATC
354 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
* * * * * *
10415899 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTAGGACGAACTTCCAAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10415964 AACTTATTTTCAATAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAACT
66 AACTTATTTAC-GTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACT
* *
10416029 TTTACGATTTCTTTTATAACTTC-GATTCCAGAGAGTATTCAAGATGATCCATTCTTTCTAGTAA
130 TTTACGATTTCTTTTATAACTTCTG-TTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAA
*
10416093 TTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
194 TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
* * * *
10416158 CAAGTATTGGTCCTTGAATTAAAAGCCTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGAC
259 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * *
10416223 GAACTTTCGAACTTGTGAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAA
324 GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
10416288 CATCC-AA---A-C
389 CTTCCAAACTTATC
* * * *
10416297 -----C-TGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
10416356 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGACAGAAAC
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTC--AAAC
* **** * * *** * * ** **
10416421 TTATTTATGTAAGAATTGTT-T-CCCTCTTGGTTATTGGACGAA-CATCCGAACTTG-T-CAAAC
129 -T-TTTACG-ATTTCTT-TTATAACTTC-T-GTT-CCAGA--AAGTATTC-AAGATGATCCATTC
* * * * ** * ** * * **
10416481 TTT-TA-CGATTTCTTTTATAAC-TT-C-GGTTCCAGAAA--GTATTCAAGATGAT-TCAATCTT
184 TTTCTAGC-AATT-TTTCA-AACATTCCATGCTCGGGAAATCGCA-T-AATTTGGTCTAAATAGT
* * * ** * *** * * *
10416538 TCTAGTAATTTTTCG--AAC-A-TTCCATGCT-CGGGAAAT-CGCA-TAAATTAGGCT-A-AA-T
244 T-T-GT-CTTTTT-GTAAACAAGTT--TTGGTCCTTGAATTAAAAACTTATTTACG-TGAGAATT
* * ** * * ** * * *
10416593 AGTTCGTCTTTTGG----TAAAC-AAGTTTTGGTCCTTGAATTAAAAACTTATTTAAGT-AAAAT
302 GGTTC-TCTCTTGGTTCTTGGACGAA-CTTTCGAACTTG--TCAAAAACTTATTTACGTGAGAAT
* * ** *
10416652 TGGTTCTCTCTTTGTT-TTGGACGAACTTCTGAACTTGTC
363 TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATC
* * *
10416691 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
10416756 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * *
10416821 TTACGA-TT-TTTTCTAACTT-TGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGAT
131 TTACGATTTCTTTTATAACTTCT-GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAAT
* * * * *
10416883 TTTTCTAACATTCCATTCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAAC
195 TTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* * * * *
10416948 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACG
260 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
* * * * * *
10417012 AACTTCCAAACTTGTCAAAAACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
325 AACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
10417077 ATCCTAACTTGTC
390 TTCCAAACTTATC
10417090 AAA
1 AAA
10417093 CTTTTACGAT
Statistics
Matches: 1568, Mismatches: 316, Indels: 263
0.73 0.15 0.12
Matches are distributed among these distances:
388 2 0.00
389 27 0.02
390 27 0.02
391 82 0.05
392 86 0.05
393 49 0.03
394 37 0.02
395 40 0.03
396 41 0.03
397 43 0.03
398 52 0.03
399 44 0.03
400 476 0.30
401 8 0.01
402 56 0.04
403 115 0.07
404 59 0.04
405 3 0.00
407 1 0.00
411 2 0.00
412 2 0.00
416 1 0.00
418 3 0.00
419 58 0.04
420 177 0.11
422 7 0.00
423 2 0.00
424 4 0.00
425 5 0.00
426 5 0.00
427 7 0.00
428 12 0.01
429 14 0.01
430 12 0.01
431 2 0.00
432 7 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (402 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
TTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA
ACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCAAACTTATC
Found at i:10415456 original size:62 final size:62
Alignment explanation
Indices: 10415355--10415543 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
10415345 TCCTTGAATT
* * *
10415355 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTG
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
* * * * *
10415417 AAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
* * *
10415479 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
10415541 AAA
1 AAA
10415544 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
Found at i:10415708 original size:79 final size:79
Alignment explanation
Indices: 10415577--10415727 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 79
10415567 TCAGTTCCAA
* * *
10415577 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
1 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAATCACA
10415642 TCATTTGGCTCCTT
66 TCATTTGGCTCCTT
* *
10415656 AAAGTATTCAAGA-AGATTCATTCCTT-TAAGCAAA-TTTCCAAACATTCCATGCTCGAGAAATC
1 AAAGTATTCAAGATA-ATCCATTCCTTCT-AG-AAATTTTCCAAACATTCCATGCTCGAAAAATC
10415718 ACATCATTTG
63 ACATCATTTG
10415728 TTCAAAATAG
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
78 2 0.03
79 59 0.92
80 3 0.05
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (79 bp):
AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTCCAAACATTCCATGCTCGAAAAATCACA
TCATTTGGCTCCTT
Found at i:10416007 original size:63 final size:62
Alignment explanation
Indices: 10415778--10416026 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
10415768 TTTAGTTAAT
* * * *
10415778 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10415840 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAGGAACTTCCAAACTTATCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10415902 AACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTAGGACGAACTTCCAAACTTGTAAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10415964 AACTTATTTTCAATAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTAC-ATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10416027 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
62 123 0.73
63 45 0.27
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10416286 original size:62 final size:62
Alignment explanation
Indices: 10416185--10416479 Score: 351
Period size: 62 Copynumber: 4.9 Consensus size: 62
10416175 ATTAAAAGCC
* * * *
10416185 TATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10416247 TATTTACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAACA-T----C----C--AAACC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10416298 TGTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * *
10416360 TATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGACAGAAACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
* * * * *
10416422 TATTTATGTAAGAATTGTTTCCCTCTTGGTTATTGGACGAACATCCGAACTTGTCAAA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
10416480 CTTTTACGAT
Statistics
Matches: 195, Mismatches: 27, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
51 42 0.22
52 1 0.01
56 1 0.01
57 1 0.01
60 1 0.01
61 1 0.01
62 148 0.76
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (62 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACT
Found at i:10416385 original size:113 final size:113
Alignment explanation
Indices: 10416187--10416403 Score: 371
Period size: 113 Copynumber: 1.9 Consensus size: 113
10416177 TAAAAGCCTA
*
10416187 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTGAAAAACTTATTT
1 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
* *
10416252 ACGTGAGAATTGTTTCTCTCTTGATTCTTTGACGAACATCCAAACCTG
66 ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
* * *
10416300 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTT
1 TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
*
10416365 ACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACAT
66 ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACAT
10416404 TCGAACTTGA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (113 bp):
TTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
ACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACATCCAAACCTG
Found at i:10416748 original size:62 final size:60
Alignment explanation
Indices: 10416631--10416817 Score: 250
Period size: 62 Copynumber: 3.0 Consensus size: 60
10416621 TCCTTGAATT
* * * *
10416631 AAAAACTTATTTAAGTAAAATTGGTTCTCTCTTTGTT-TTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
*
10416691 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTC
* * *
10416753 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
10416815 AAA
1 AAA
10416818 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
60 14 0.12
61 18 0.16
62 79 0.70
63 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:10417043 original size:61 final size:62
Alignment explanation
Indices: 10416967--10417092 Score: 155
Period size: 61 Copynumber: 2.0 Consensus size: 62
10416957 TCCTTGAATT
* * * * * *
10416967 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACGAACTTCCAAACTTGTC
1 AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
* * * *
10417028 AAAAACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTC
1 AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
10417090 AAA
1 AAA
10417093 CTTTTACGAT
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
61 29 0.54
62 25 0.46
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAAAATTGTTTCTCTCCTGGTTCTTAGACGAACATCCAAACTTGTC
Found at i:10417316 original size:62 final size:62
Alignment explanation
Indices: 10417244--10417370 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
10417234 TCTTTAAATT
* * *
10417244 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
10417306 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
10417368 AAA
1 AAA
10417371 CTTTTACTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC
Found at i:10417401 original size:278 final size:278
Alignment explanation
Indices: 10416691--10417648 Score: 1357
Period size: 278 Copynumber: 3.5 Consensus size: 278
10416681 TGAACTTGTC
* *
10416691 AAAAACTTATTTACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
10416756 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCCTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
* * *
10416821 TTACGA-TT-TTTTCTAACTTTGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCGATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * *
10416884 TTTCTAACATTCCATTCTCAGGAAATCGCATAATTTGGTTTAAATAGTTTTTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
*
10416949 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCTTTGAATT
* * * * *
10416967 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCTGG-TCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
10417031 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAACTT
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
** * * *
10417096 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
* * * * * * *
10417161 TTTCGAACATTCCATGCTTTGAAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAACA
196 TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
*
10417226 AGTTTTGGTCTTTAAATT
261 AGTTTTGGTCTTTGAATT
*
10417244 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAA
10417308 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACT
* ** *
10417373 TTTACTATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCAAGCAAT
130 TTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAAT
* * * *
10417438 TTTTCGAACACTCCATGCTTAGGAAATCGCATAAGTTGGTATAAATAGTTTGTCTTTTTTTAAAC
195 TTTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAAC
10417503 AAGTTTTGGTCTTTGAATT
260 AAGTTTTGGTCTTTGAATT
* * * ** * **
10417522 AAAAACTTATTTATGTGAGAATTGGTTCTCCCTCAGTTCTTGGAAGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
10417587 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAA
10417649 AACTTATTTA
Statistics
Matches: 597, Mismatches: 80, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
275 90 0.15
276 34 0.06
277 150 0.25
278 322 0.54
279 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
AACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
TTTCGAACATTCCATGCTTAGGAAATCGCATAATTTGGTATAAATAGTTTCTCTTTTTGTAAACA
AGTTTTGGTCTTTGAATT
Found at i:10417703 original size:61 final size:62
Alignment explanation
Indices: 10417522--10417771 Score: 313
Period size: 62 Copynumber: 4.0 Consensus size: 62
10417512 TCTTTGAATT
* * * ** * * ***
10417522 AAAAACTTATTTATGTGAGAATTGGTTCTCCCTCAGTTCTTGGAAGAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* *
10417584 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * **
10417646 AAAAACTTATTTACGTGAGAATT-TTTCTCTCTTTGTTCTTTGATGTTCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * *
10417707 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
10417769 AAA
1 AAA
10417772 CTTTTACTAT
Statistics
Matches: 162, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
61 54 0.33
62 108 0.67
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:10418023 original size:62 final size:62
Alignment explanation
Indices: 10417922--10418110 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
10417912 TCCTTAAATT
* * * * *
10417922 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
10417984 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGTACGAACTTCCAAACATGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
10418046 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
10418108 AAA
1 AAA
10418111 CTTTTGCGAG
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10418325 original size:62 final size:62
Alignment explanation
Indices: 10418251--10418377 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
10418241 TCTTTAAATT
* * *
10418251 AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAATATCCGAACTTGTC
1 AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
10418313 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10418375 AAA
1 AAA
10418378 CTTTTACTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTAATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10418628 original size:62 final size:62
Alignment explanation
Indices: 10418529--10418778 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
10418519 TCCTTGAATT
** * * * ***
10418529 AAAAACTTA-TTATGTGAGAATTGGTTCTGTCTCGGTTCTTGGACGAACTTTTGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
10418590 AAAAACTTATTTACATGAGAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
10418652 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
10418714 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
10418776 AAA
1 AAA
10418779 CTTTTACGAT
Statistics
Matches: 170, Mismatches: 18, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
61 9 0.05
62 161 0.95
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:10419031 original size:62 final size:62
Alignment explanation
Indices: 10418930--10419118 Score: 265
Period size: 62 Copynumber: 3.0 Consensus size: 62
10418920 TCCTTGAATT
* *
10418930 AAAAACTTATTTACGTGAGAATTCG-TTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
* * *
10418992 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
* * * *
10419054 AAAAACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACAT-CTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTAC-GAACTTGTC
10419116 AAA
1 AAA
10419119 CTTTTATGAT
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
61 2 0.02
62 111 0.98
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTACGAACTTGTC
Found at i:10419225 original size:340 final size:340
Alignment explanation
Indices: 10416967--10419225 Score: 1681
Period size: 340 Copynumber: 6.7 Consensus size: 340
10416957 TCCTTGAATT
* * * * * *
10416967 AAAAACTTATTTACGTGAGAGTTGTTTCTTTCCT-GGTCTTAGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10417031 AACTTCTGTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * *
10417096 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* * * * *
10417161 TTTCGAACATTCCATGCTTTG-AAAATCCCATCATTTGGTCTAAATTGTTTCTCATTTTGTAAAC
196 TTTCGAACATTCCATGC-TCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
*
10417225 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 AAGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
10417290 AA-TATCCGAACTTGTC
325 AACT-TCCGAACTTGTC
* * * * *
10417306 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGCTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * *
10417369 AAC-T-TTTAC-T---ATTTCTTT-TATAACTTCGGTTCCTGAAAGTATTCAAGACGAT-CCATT
66 AACTTATTTACGTAAGAATTGTTTCTCT--CTT-GGTTCTTG---G-A--CGA-AC-ATCCCA-A
* * *** ** * * * *
10417426 CTT-TCAAGCAATTTTTCGAACAC-TCCAT-GCTT-AGGAAATCGC-ATAAGT-TGGT-ATAAAT
119 CTTGTCAA--ACTTTTACGATTTCTTTTATAACTTCA-G--TTC-CAAAAAGTAT--TCA-AGAT
* *** * * * * ** * ** * * *
10417484 AGTTTGTCTTTTTTTAAACAAGTTTT-GGTCTTTGAAT--T--AAAAA---C-TTATTTATGT-G
175 AATCCAT-TCTTTCTAGA-AATTTTTCGAACATTCCATGCTCGAAAAATCCCATAATTT-GGTCT
* * * * * * ** * *
10417539 AGAATTGGTTCTCCCTCAGTTCTTG-GAAGAACTTTT-GAACTT--GTCAAAAACTTATTTACAT
237 A-AA-TAGTT-T--GTC--TTTTTGTAAACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACAT
*
10417600 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
295 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * **
10417646 AAAAACTTATTTACGTGAGAATT-TTTCTCTCTTTGTTCTTTGATGTTCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
*
10417710 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAATTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * * **
10417775 TTACTATTTCTTTTATAACTTC-GTTCTAGAAAGTATTCAAGATGATCCATTCTTTCTACCAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
** * *
10417839 TTTCGAACATTCCATGCTCGGGAAATCGCTTAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* * *
10417904 AGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAA
261 AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
10417969 ACTTTCGAACTTGTG
326 ACTTCCGAACTTGTC
* * * * *
10417984 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGTACGAACTTCCAAACATGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
10418049 AACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * * *
10418114 TTGCGAGTTCTTTTATATCTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* * *
10418179 TTTCGAACATTCCATGC-C-----AT--C---ATTTGGTCTAAATTGTTTGGCATTTTGTAAACA
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
* * *
10418233 AGTTTTGGTCTTTAAATTAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGA
261 AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
10418298 A-TATCCGAACTTGTC
326 ACT-TCCGAACTTGTC
* * *
10418313 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--A
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * * * * *
10418376 AAC-T-TTTAC-T---ATTTCTTT-TATAACTTCTGTTCCT-GA--AAGTATTCAAGAC--GATC
66 AACTTATTTACGTAAGAATTGTTTCTCT--CTT-GGTTCTTGGACGAA-CATCCCA-ACTTG-T-
** * * ** * * * ** ***
10418429 CATTCTTTCGAGCAATTT-TTCGA-ACACTCCATGCTCGGGAAATCGTATAATTTGGTATAAATA
124 CAAACTTT-TA-CGATTTCTTTTATA-ACTTCA-GTTC--CAAAAAGTAT--TCAAG-AT-AAT-
*** * * * ** * ** ** * *
10418492 GTTTGTCTTTTTGTAAACAAGTTTT-GGTCCTTGAAT--T--AAAAA-CTTATTATGTGAG---A
178 CCAT-TC--TTTCTAGA-AATTTTTCGAACATTCCATGCTCGAAAAATCCCATAATTTG-GTCTA
* * * * ** * *
10418548 ATTGGTTCTGTCTCGGTTCTTG--GACGAACTTTT-GAACTT--GTCAAAAACTTATTTACATGA
238 AATAGTT-TGTCT---TT-TTGTAAAC-AAGTTTTGGTCCTTAAATTAAAAACTTATTTACATGA
* *
10418608 GAATTGTTTCTCACTTGGTTCTTGGACGAACTTCCAAACTTGTC
297 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
10418652 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
10418717 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* * * *
10418782 TTACGATTTCTTTTATAACTTCTGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGTAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
* **
10418847 TTTCGAACATTCCATGCTC-AGGAAATCGTATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
196 TTTCGAACATTCCATGCTCGA-AAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* * *
10418911 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTCG-TTCTCTCTTGGTTCTTGGAT
260 AAGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATT-GTTTCTCTCTTGGTTCTTGGAC
* *
10418975 GAACTTTCGAACTTGTG
324 GAACTTCCGAACTTGTC
* * * * * *
10418992 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGATGAACTTACGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
* **
10419057 AACTTATTTACGTAAGAATTGTTTTTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTT
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
* *
10419122 TTATGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
131 TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
*
10419187 TTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGT
196 TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGT
10419226 TCCTTAAAGT
Statistics
Matches: 1471, Mismatches: 309, Indels: 279
0.71 0.15 0.14
Matches are distributed among these distances:
320 5 0.00
321 10 0.01
322 13 0.01
323 11 0.01
324 8 0.01
325 5 0.00
326 8 0.01
327 4 0.00
328 3 0.00
329 156 0.11
330 3 0.00
331 3 0.00
332 15 0.01
333 21 0.01
334 42 0.03
335 23 0.02
336 26 0.02
337 29 0.02
338 120 0.08
339 308 0.21
340 441 0.30
341 46 0.03
342 33 0.02
343 37 0.03
344 22 0.01
345 31 0.02
346 23 0.02
347 18 0.01
348 7 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCCAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATT
TTTCGAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
AGTTTTGGTCCTTAAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCGAACTTGTC
Found at i:10419276 original size:79 final size:79
Alignment explanation
Indices: 10419152--10419301 Score: 216
Period size: 79 Copynumber: 1.9 Consensus size: 79
10419142 TCAGTTCCAA
* * *
10419152 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCA
1 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTACAAACATTCCATGCTCGAAAAATCACA
10419217 TCATTTGGTTCCTT
66 TCATTTGGTTCCTT
*
10419231 AAAGTATTCAAGA-AGATCCATTCCTT-TAAGCAAA-TTTACAAACATTCCATGCTCGAGAAATC
1 AAAGTATTCAAGATA-ATCCATTCCTTCT-AG-AAATTTTACAAACATTCCATGCTCGAAAAATC
10419293 ACATCATTT
63 ACATCATTT
10419302 TTTCAAAATA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
78 2 0.03
79 59 0.92
80 3 0.05
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.33
Consensus pattern (79 bp):
AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTACAAACATTCCATGCTCGAAAAATCACA
TCATTTGGTTCCTT
Found at i:10419431 original size:62 final size:62
Alignment explanation
Indices: 10419352--10419599 Score: 417
Period size: 62 Copynumber: 4.0 Consensus size: 62
10419342 TTTAGTTAAT
* * *
10419352 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10419414 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10419476 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10419538 AACTTATTT-CAATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
10419600 CTTTTACGAT
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 1 0.01
62 175 0.99
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10419905 original size:62 final size:63
Alignment explanation
Indices: 10419751--10419928 Score: 259
Period size: 63 Copynumber: 2.8 Consensus size: 63
10419741 TCCTTGAATT
* * * * * * *
10419751 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATGA
* * *
10419814 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTAT-C
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATGA
10419876 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
10419929 GAACTTGTCA
Statistics
Matches: 103, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
62 51 0.50
63 52 0.50
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (63 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATGA
Found at i:10419940 original size:62 final size:62
Alignment explanation
Indices: 10419751--10419940 Score: 281
Period size: 62 Copynumber: 3.0 Consensus size: 62
10419741 TCCTTGAATT
* * * * *
10419751 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT-C
* * * * *
10419814 AAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10419876 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
10419938 AAA
1 AAA
10419941 CATTTATGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
62 60 0.54
63 52 0.46
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:10420168 original size:211 final size:217
Alignment explanation
Indices: 10419876--10420369 Score: 594
Period size: 213 Copynumber: 2.3 Consensus size: 217
10419866 CAAACCTATC
* * * *
10419876 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10419941 CATTTATGATTTCTTTTATAACTTCGGTTCC-AAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10420003 AAATTTTCGAACATTCCATGCTCGGA-AAATCTCATCATTT-GTCTAAATAGTTTGTCATTTTG-
130 AAATTTCCAAACATTCCATGCT-GGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA
* * *
10420065 TAAACAGGTTTAGGCCT-TTAAATT
194 CAAACAAGTTTAGGACTGTT-AATT
* * *
10420089 AAAAACTTATTTACGTGAGAATTGTATCTC-CTT-GCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
** *
10420152 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATACAAGACAATCCATTCCTTTGAGC
* *
10420216 AAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10420281 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * * *
10420305 AATAACTTAGTTACGTGAGAATTGTTTCACTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10420370 AACTTATCTA
Statistics
Matches: 236, Mismatches: 34, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
210 3 0.01
211 50 0.21
212 27 0.11
213 60 0.25
214 21 0.09
216 43 0.18
217 5 0.02
218 27 0.11
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCTAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10420408 original size:62 final size:61
Alignment explanation
Indices: 10420308--10420555 Score: 327
Period size: 62 Copynumber: 4.0 Consensus size: 61
10420298 GTTAATTAAT
* *
10420308 AACTTAGTTACGTGAGAATTGTTTCACTCTTGGC-TCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGAACTTCCAAACTTGTCAAA
*
10420370 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
10420432 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
10420494 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
10420556 CTTTTTCGAT
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
61 4 0.02
62 162 0.96
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:10420872 original size:215 final size:216
Alignment explanation
Indices: 10420491--10420979 Score: 587
Period size: 215 Copynumber: 2.3 Consensus size: 216
10420481 TGAACTTGTC
* * *
10420491 AAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
** * * * ** ** **
10420556 CTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAA
66 CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAGCAAACAAGACAATAAATTCCTTCTAGAAA
* * * *
10420621 TATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTG-TAA
131 TATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10420685 ACAAGTTTTGGCCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * * *
10420706 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
* * * *
10420770 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCAAACAAGACGATAAATTCCTT-TGAGC
66 CTTTCACGAGTTCCTTTATAACTTAGGTACC-AAAAGCAAACAAGACAATAAATTCCTTCT-AG-
*
10420834 AAAT-TTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 AAATATTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
10420897 ACCAAACAAGTTTTGGACTGTTAATT
192 A-CAAACAAGTTTTGGACTGTTAATT
* * * *
10420923 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCC-AACT
1 AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
10420980 TGTTAAAAAC
Statistics
Matches: 231, Mismatches: 35, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
214 58 0.25
215 99 0.43
216 4 0.02
217 50 0.22
218 20 0.09
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (216 bp):
AAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTAGTCAAA
CTTTCACGAGTTCCTTTATAACTTAGGTACCAAAAGCAAACAAGACAATAAATTCCTTCTAGAAA
TATTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
ACAAGTTTTGGACTGTTAATT
Found at i:10421073 original size:62 final size:62
Alignment explanation
Indices: 10420926--10421172 Score: 388
Period size: 62 Copynumber: 4.0 Consensus size: 62
10420916 GTTAATTAAT
* * * * *
10420926 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCC-AACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
10420987 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
10421049 AACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10421111 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
10421173 CTTTTACGAT
Statistics
Matches: 171, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
61 47 0.27
62 124 0.73
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:10421132 original size:617 final size:617
Alignment explanation
Indices: 10419751--10421728 Score: 3252
Period size: 617 Copynumber: 3.2 Consensus size: 617
10419741 TCCTTGAATT
* * * * * *
10419751 AAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTGAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT-CAA
* * * *
10419816 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTATCAAAAA
65 AAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAA
*
10419881 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTT
130 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-TTT
* *
10419946 AT-GATTTCTTTTATAACTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
194 TTCGATTTCTTTTATAACTTCGGTACCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTT
* *
10420010 CGAACATTCCATGCTCGGAAAATCTCATCATTT-GTCTAAATAGTTTGTCATTTTGTAAACAGGT
259 CGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* *
10420074 TTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT-GCTGTTGGACGAACTT
324 TTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTT
*
10420138 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATC
389 TCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATC
*
10420203 CATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
454 CATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGT
10420268 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
519 TTGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
*
10420333 ACTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
584 TCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
* * *
10420367 AAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10420432 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAACC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
*
10420497 TTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
131 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
* *
10420562 CGATTTCCTTTATAACTTCGGTACCAAAAGTATTCAAGTTAATTCATTCCTTCTAGAAATATTTC
196 CGATTTCTTTTATAACTTCGGTACCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT-TTTC
* *
10420627 AAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTT
260 GAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
10420692 TTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTT
325 TTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTT
* **
10420757 CGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCAAACAAGACGATAA
390 CGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCC
10420822 ATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTT
455 ATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTT
10420887 TGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCT
520 TGTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCT
* * *
10420952 CTCTTAGCTCTTGGACGAAC-TTCCAACTTGTT
585 CTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
10420984 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
10421049 AACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAAAAC
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
*
10421114 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
* *
10421179 CGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTC
196 CGATTTCTTTTATAACTTCGGTACC-AAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTC
* *
10421244 GATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
260 GAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
* *
10421309 TTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAACTTT
325 TTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTT
* **
10421374 CGAACTTGTCAAACTTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCC
390 CGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCC
10421439 ATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTT
455 ATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTT
* * * * * *
10421504 TGTCATTTTGACCAAACAAG-TTTCGATCCT-TGAATTAAAAACTTATTTACGTG-GCAATCGGT
520 TGTCATTTTGACCAAACAAGTTTTGGA--CTGTTAATTAATAACTTAGTTACGTGAG-AATTGTT
*
10421566 TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
582 TCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTC
* * * * *
10421602 AAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
10421667 AACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-TGAACATCCGAACTTGTCAAA
66 AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCCGAACTTGTCAAA
10421729 CTTTGACGAT
Statistics
Matches: 1273, Mismatches: 79, Indels: 18
0.93 0.06 0.01
Matches are distributed among these distances:
614 4 0.00
615 175 0.14
616 95 0.07
617 614 0.48
618 385 0.30
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (617 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTT
CGATTTCTTTTATAACTTCGGTACCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTCG
AACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTC
GAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCA
TTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTT
GTCATTTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTC
TCTTGGCTCTTGGACGAACTTTCAAACTTGTC
Found at i:10421502 original size:215 final size:215
Alignment explanation
Indices: 10421108--10421604 Score: 594
Period size: 215 Copynumber: 2.3 Consensus size: 215
10421098 TGAACTTGTC
* * *
10421108 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATCG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * **
10421173 CTTTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
65 CTTTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10421238 ATTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG-TAA
130 ATTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAA
*
10421302 ACAAGTTTTG-GCCTTTAAATT
195 ACAAGTTTCGAGCC-TTAAATT
* *
10421323 AAAAACTTATTTACGTGAGAATCGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATCGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * ** *
10421387 CTTTCT-TGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAG
65 CTTT-TACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG
*
10421450 CAAATTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 -AAATTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* *
10421514 ACCAAACAAGTTTCGATCCTTGAATT
191 A-CAAACAAGTTTCGAGCCTTAAATT
*
10421540 AAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATC-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
10421604 A
64 A
10421605 GACTTATTTA
Statistics
Matches: 240, Mismatches: 31, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
213 1 0.00
214 80 0.33
215 81 0.34
216 1 0.00
217 42 0.17
218 35 0.15
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATCGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAAA
TTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACAAA
CAAGTTTCGAGCCTTAAATT
Found at i:10421641 original size:62 final size:62
Alignment explanation
Indices: 10421569--10421728 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
10421559 AATCGGTTCT
* * * *
10421569 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAGACTTATTTACATGAGTATTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* *
10421631 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
* * * *
10421693 CTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
10421729 CTTTGACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACCTATTTACATAAGAATTGTTTCA
Found at i:10422042 original size:557 final size:556
Alignment explanation
Indices: 10420982--10422211 Score: 2031
Period size: 557 Copynumber: 2.2 Consensus size: 556
10420972 TTCCAACTTG
*
10420982 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCA
* * * *
10421047 AAAACTTATTCACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACATCTGAACTTGTCAAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAAA
* *
10421112 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
131 ACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
*
10421177 TACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
196 GACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
* * *
10421242 TCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
261 TCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAG
*
10421307 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGATGAACT
326 TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACGAACT
* **
10421372 TTCGAACTTGTCAAACTTTCTTGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGAT
391 TTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGAT
10421437 CCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAG
456 CCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAG
10421502 TTTGTCATTTTGACCAAACAAG-TTTCGATCCT-TGAA
521 TTTGTCATTTTGACCAAACAAGTTTTCGA--CTGTGAA
* *
10421538 TTAAAAACTTATTTACGTG-GCAATCGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 TTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
10421602 AAAGACTTATTTACATGAGTATTGTTTCACTCTTGGTTCTTGGACGAAC-TTTCAAACTTGTCAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCT-AAACTTGTCAA
*
10421666 AAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
129 AAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
* *
10421731 TTGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAT
194 TTGACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAA-
* *
10421796 TTTTTGAACATTTCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAAC
258 TTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAAC
* *
10421861 AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGA
323 AAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACGA
10421926 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
388 ACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGAC
10421991 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAA
453 GATCCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAA
* *
10422056 TAGTTTGTCATTTTGACCAAACAAGTTTTGGACTGTTAA
518 TAGTTTGTCATTTTGACCAAACAAGTTTTCGACTGTGAA
* * *
10422095 TTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACAAAC-TTCAAAACTTG
1 TTAA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTC-AAACTTG
*
10422158 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATC
63 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
10422212 CGAAGTTGTC
Statistics
Matches: 622, Mismatches: 42, Indels: 17
0.91 0.06 0.02
Matches are distributed among these distances:
555 3 0.00
556 236 0.38
557 286 0.46
558 95 0.15
559 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (556 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTAAACTTGTCAAAA
ACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
GACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTT
TCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAG
TTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATCGTATCTCCTTGGTTGTTGGACGAACT
TTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGAT
CCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAG
TTTGTCATTTTGACCAAACAAGTTTTCGACTGTGAA
Found at i:10422046 original size:215 final size:217
Alignment explanation
Indices: 10421664--10422142 Score: 576
Period size: 215 Copynumber: 2.2 Consensus size: 217
10421654 CAAACTTGTC
* * * *
10421664 AAAAACCTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
* * * * * **
10421729 CTTTGACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
*** * * * *
10421794 ATTTTTTGAACATTTCATGCTCGGAAAATCCCATCATTTGGTCTAAAGAGTTTGTCATTTTG-TA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAAGAGTTTGTCATTTTGACA
*
10421858 AACAAGTTTTGGCCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
* * * *
10421880 AAAAACTTATTTACGTGAGAATTGTGTCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
** *
10421944 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCT-AG-
* *
10422008 AAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAAGAGTTTGTCATTTTG
10422071 ACCAAACAAGTTTTGGACTGTTAATT
193 A-CAAACAAGTTTTGGACTGTTAATT
* *
10422097 AATTAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGAC
1 AA-AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGAC
10422143 AAACTTCAAA
Statistics
Matches: 222, Mismatches: 32, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
214 3 0.01
215 129 0.58
216 30 0.14
217 21 0.09
218 29 0.13
219 10 0.05
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTAGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAAGAGTTTGTCATTTTGACA
AACAAGTTTTGGACTGTTAATT
Found at i:10422539 original size:62 final size:61
Alignment explanation
Indices: 10422373--10422560 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
10422363 TCCTCAAATG
* * *
10422373 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * * *
10422435 AAAGA-TTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
10422496 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10422558 AAA
1 AAA
10422561 CATTTATGAT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
61 49 0.47
62 56 0.53
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10422792 original size:215 final size:217
Alignment explanation
Indices: 10422496--10422993 Score: 605
Period size: 215 Copynumber: 2.3 Consensus size: 217
10422486 CGAACTTGTC
* * * *
10422496 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * **
10422561 CATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-
66 CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGC
* * * *
10422624 AAATATTTCGAACATTCCATGCTCGGA-AAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTG
130 AAAT-TTCCAAACATTCCATGCT-GGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
10422688 -TAAACAGGTTTAGGCCT-TTAAATT
193 ACAAACAAGTTTAGGACTGTT-AATT
* * * *
10422712 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
*** *
10422776 C-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGC
66 CATTT-ACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGC
* *
10422840 AAATTTCCAAACATTTCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAC
130 AAATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGA-
*
10422905 CAAACAAGTTTTGGACTGTTAATT
194 CAAACAAGTTTAGGACTGTTAATT
* * *
10422929 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10422994 AACTTATCTA
Statistics
Matches: 238, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 6 0.03
215 124 0.52
216 32 0.13
217 44 0.18
218 32 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
CATTTACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTGGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACA
AACAAGTTTAGGACTGTTAATT
Found at i:10423165 original size:62 final size:61
Alignment explanation
Indices: 10422932--10423179 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 61
10422922 GTTAATTAAT
* * *
10422932 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10422994 AACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * **
10423056 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAA
1 AACTTATT-ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
10423118 ACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGACAAA
1 AACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
10423180 CTTTTTCGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
61 2 0.01
62 163 0.98
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:10423631 original size:63 final size:62
Alignment explanation
Indices: 10423469--10423665 Score: 290
Period size: 62 Copynumber: 3.2 Consensus size: 62
10423459 AAACTTTCCA
* * * *
10423469 AACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTA-GCTCTTGGACGAACTTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TAGGTTCTTGGACGAACATCCG
* * *
10423531 AACTTGTCAAAAACTTATTCAC-TGAGAATTGTTTCTCTCTAGGTTCTTTGGACTAACATCTG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTC-TTGGACGAACATCCG
*
10423593 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACATCCG
10423655 AACTTGTCAAA
1 AACTTGTCAAA
10423666 CTGTTACGAT
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
60 2 0.02
61 20 0.17
62 76 0.63
63 23 0.19
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTAGGTTCTTGGACGAACATCCG
Found at i:10423892 original size:486 final size:486
Alignment explanation
Indices: 10422975--10423956 Score: 1747
Period size: 486 Copynumber: 2.0 Consensus size: 486
10422965 CTCTTGGACG
*
10422975 AACTTT-CAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAA
1 AACTTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAA
*
10423039 CTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACAT
66 CTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
*
10423104 CTGAACTTGTCAAAACCTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG
131 CTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG
* * * *
10423169 AACTTGACAAACTTTTTCGATTTCCTTTATAACTTCGGTACCAAAAAGTATTCAAGTTAATTCAT
196 AACTTGACAAACTGTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCAT
10423234 TCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
261 TCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
*
10423299 TCATTTTGTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
326 TCATTTTATAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
10423364 GGTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTA
391 GGTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTA
10423429 AAGCATACAAGACGATCCATTCCTTTGAGCA
456 AAGCATACAAGACGATCCATTCCTTTGAGCA
* *
10423460 AACTTTCCAAACTTGTCAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTAGC-TCTTGGACGA
1 AACTTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGACGA
10423524 ACTTCCAAACTTGTCAAAAACTTATTCAC-TGAGAATTGTTTCTCTCTAGGTTCTTTGGACTAAC
65 ACTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTAGGTTC-TTGGACTAAC
*
10423588 ATCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
129 ATCTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
* * *
10423653 CGAACTTGTCAAACTGTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCC
194 CGAACTTGACAAACTGTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCC
* * * *
10423718 ATTCCTTCTAGAAATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTT
259 ATTCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTT
10423783 TGTCATTTTATAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
324 TGTCATTTTATAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCC
*
10423848 TTGGTTGTTGGACGAACTTTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCT
389 TTGGTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCT
10423913 TAAAGCATACAAGACGATCCATTCCTTTGAGCA
454 TAAAGCATACAAGACGATCCATTCCTTTGAGCA
10423946 AA-TTTCCAAAC
1 AACTTTCCAAAC
10423957 ATTCCATGCT
Statistics
Matches: 475, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
485 38 0.08
486 435 0.92
487 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (486 bp):
AACTTTCCAAACTTGTCAAAAACTTATCTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTCACTTGAGAATTGTTTCTCTCTAGGTTCTTGGACTAACAT
CTGAACTTGTCAAAAACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG
AACTTGACAAACTGTTACGATTTCCTTTATAACTTCGATACCAAAAAGTATTCAAGTTAATCCAT
TCCTTCTAGAAATATTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCCAAATAGTTTG
TCATTTTATAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTT
GGTTGTTGGACGAACTTTCAAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTA
AAGCATACAAGACGATCCATTCCTTTGAGCA
Found at i:10423983 original size:215 final size:217
Alignment explanation
Indices: 10423601--10424096 Score: 596
Period size: 215 Copynumber: 2.3 Consensus size: 217
10423591 TGAACTTGTC
* *
10423601 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * **
10423666 CTGTTACGATTTCTTTTATAACTTTGATACCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
66 CTGTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
* * * * * * *
10423731 ATTTTTCGATCATTCCATGGTCGGAAAATCCCATCATTTGGTCCAAATAGTTTGTCATTTT-A-T
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC
* *
10423794 AAACAAGTTTTGGCCT-TTAAATT
196 AAACAAG-TTTCGACTGTT-AATT
* * *
10423817 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * ** *
10423881 CT-TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTT-TGAG
66 CTGTT-ACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCT-AG
*
10423944 CAAA-TTTCCAAACATTCCATGCT-TGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
129 -AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
10424007 GACCAAACAAGTTTCGACTGTTAATT
192 GACCAAACAAGTTTCGACTGTTAATT
* * * * *
10424033 AATAACTTAGTTACGTGAG-ATTGTTTCTCTCTTAGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
10424097 AACTTATTTA
Statistics
Matches: 238, Mismatches: 34, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
214 5 0.02
215 135 0.57
216 89 0.37
217 9 0.04
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTGTTACGAGTTCTTTTATAACTTAGATACCAAAAAGCATACAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC
AAACAAGTTTCGACTGTTAATT
Found at i:10424155 original size:60 final size:62
Alignment explanation
Indices: 10424036--10424198 Score: 251
Period size: 60 Copynumber: 2.7 Consensus size: 62
10424026 GTTAATTAAT
* * *
10424036 AACTTAGTTACGTGAG-ATTGTTTCTCTCTTAGCTCTTGGACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
*
10424097 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG-AC-TTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* *
10424157 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
10424199 TAACATGATG
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
60 54 0.57
61 17 0.18
62 23 0.24
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
Found at i:10425074 original size:61 final size:60
Alignment explanation
Indices: 10424911--10425097 Score: 239
Period size: 61 Copynumber: 3.0 Consensus size: 60
10424901 CCTCAAATGA
* * * *
10424911 AAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTACTTGGACGAACTTTCGAACTTGTC
1 AAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
10424972 AAAGACTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAA-ACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
10425034 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
10425095 AAA
1 AAA
10425098 CATTTATGAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
61 56 0.53
62 49 0.46
63 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.37
Consensus pattern (60 bp):
AAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:10425332 original size:214 final size:213
Alignment explanation
Indices: 10425034--10425525 Score: 557
Period size: 214 Copynumber: 2.3 Consensus size: 213
10425024 CGAACTTGTC
* * * *
10425034 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * * **
10425099 ATTTATGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT-AG-A
65 ATTTATGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTT-TGAGCA
* * * *
10425162 AATATTTCGAACATTCCATGCTCGAAAATCTCATCATTTGGTCTAAATAGTTTTGTCATTTTG-T
129 AAT-TTCCAAACATTCCATGCTCGAAAATCACATCATTTGGTC-AAATAG-TTTGTCA-TTTGAC
* *
10425226 AAACAGGTTTAGGCCT-TTAAATTA
190 AAACAAGTTTAGGACTGTT-AATTA
* * *
10425250 AAAACTTATTTACGTGAGAATTGTATCTC-CTTTGCTGTT-GACGAACTTTCGAACTAGTCAAAC
1 AAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAAC
* *** *
10425313 -TTTCTCGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGATCCATTCCTTTGAGCA
65 ATTTAT-GAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCA
* * *
10425377 AATTTCCAAACATTTCATGCTTGAGAATCACATCATTTGGTCAAATAGTTTGTCATTTGACCAAA
129 AATTTCCAAACATTCCATGCTCGAAAATCACATCATTTGGTCAAATAGTTTGTCATTTGA-CAAA
*
10425442 CAAGTTTTGGACTGTTAATTA
193 CAAGTTTAGGACTGTTAATTA
* * * *
10425463 ATAACTTAGTTACGTGAGAATTGTTCTCTCTTGGCTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAA
10425526 AACTTATTTA
Statistics
Matches: 232, Mismatches: 35, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
211 4 0.02
212 11 0.05
213 59 0.25
214 120 0.52
215 12 0.05
216 26 0.11
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (213 bp):
AAAACTTATTTACGTGAGAATTGTTCTCTCTTGGCTCTTGGACGAACTTTCGAACTTGTCAAACA
TTTATGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATACAAGACAATCCATTCCTTTGAGCAAA
TTTCCAAACATTCCATGCTCGAAAATCACATCATTTGGTCAAATAGTTTGTCATTTGACAAACAA
GTTTAGGACTGTTAATTA
Found at i:10425343 original size:830 final size:813
Alignment explanation
Indices: 10424094--10425587 Score: 2406
Period size: 827 Copynumber: 1.8 Consensus size: 813
10424084 CAAACTTGTC
* * *
10424094 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGACTTCAAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTACTTGGACGACTTCAAACTTGTCAAAAA
* * * * * **
10424159 CTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATGATGTCACGCTACTTACGT
66 CTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACATGATGTCAAACTACTTACGT
*
10424224 AAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTCGATTTCCTTTA
131 AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTCGATTTCCTTTA
*
10424289 TAACTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATTTTTCAACATTCATGCT
196 TAACTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTTCAACATTCATGCT
*
10424354 CGGAAAATCCCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATTA
261 CGGAAAATCCCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTA
* *
10424419 AAAACTTATTTACGTGAGAATTGTGTCTCCTTGGTTGTTGGACGAACTTTCGAACTAGTCAAACT
326 AAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACT
10424484 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGC-AA
391 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAA
10424548 TTTCCAAACATTCCATGCTTGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGACC-A
456 TTTCCAAACATTCCATGCTTGAG-AATCACATCATTTGGTC-AAATAGTTTGTCA-TTTGACCAA
*
10424612 ACAAGTTTTGGACTGTTAATTAATTAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGG
518 ACAAGTTTTGGACTGTTAATTAA-TAACTTAGTTACGTGAGAATTG-TTCTCTCTTGGCTCTTGG
*
10424677 ACAAAC-TTCAAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT
581 ACAAACTTTC-AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGAT
* *
10424741 GAACATCCGAAGTTGTCAAACTTTTACGATTTTTTATAACTTCGGTTCCTGAAAGTATCCAAGAT
645 GAACATCCAAACTTGTCAAACTTTTACGATTTTTTATAACTTCGGTTCCTGAAAGTATCCAAGAT
10424806 GCTCCATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGTAGTCGCATAATTTTGTCTAAAT
710 GCTCCATTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGTAGTCGCATAATTTTGTCTAAAT
10424871 AGTTTGTCTTTTTTGTAAACAAGTTTCGGTCCTCAAATG
775 AGTTTGTCTTTTTTGTAAACAAGTTTCGGTCCTCAAATG
*
10424910 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTACTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTACTTGGACG-AC-TTCAAACTTGTCAA
* * * * *
10424974 AGACTTATTTACATGAGTACTGTCTCACTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAC
63 AAACTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACAT--G-A--TGTC-AAAC
*
10425039 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTA
122 -TACTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC-TTT-
* *
10425104 TGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
184 CGATTTCCTTTATAACTTCGGTTCC-AAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTT
* *
10425169 CGAACATTCCATGCTC-GAAAATCTCATCATTTGGTCTAAATAGTTTTGTCATTTTGTAAACAGG
248 C-AACATT-CATGCTCGGAAAATCCCATCATTTGGTCTAAA-AG-TTTGTCATTTTGTAAACAAG
*
10425233 TTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTTGCTGTT-GACGAACT
309 TTTAGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACGAACT
* *
10425297 TTCGAACTAGTCAAACTTTCTCGAGTTCTTTTATAACTTAGGTTCCTTCAAGCATACAAGACGAT
374 TTCGAACTAGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGAT
*
10425362 CCATTCCTTTGAGCAAATTTCCAAACATTTCATGCTTGAGAATCACATCATTTGGTCAAATAGTT
439 CCATTCCTTTGAGCAAATTTCCAAACATTCCATGCTTGAGAATCACATCATTTGGTCAAATAGTT
10425427 TGTCATTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTCTCT
504 TGTCATTTGACCAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTCTCT
**
10425492 CTTGGCTCTTGGATGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
569 CTTGGCTCTTGGACAAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
*
10425557 GCTTCTTGGATGAACTTCCAAACTTGTCAAA
634 GCTTCTTGGATGAACATCCAAACTTGTCAAA
10425588 ACTTATTCAC
Statistics
Matches: 621, Mismatches: 37, Indels: 29
0.90 0.05 0.04
Matches are distributed among these distances:
815 1 0.00
816 41 0.07
817 2 0.00
818 52 0.08
820 1 0.00
821 1 0.00
823 4 0.01
824 2 0.00
825 57 0.09
826 3 0.00
827 114 0.18
828 71 0.11
829 66 0.11
830 111 0.18
831 95 0.15
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (813 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTACTTGGACGACTTCAAACTTGTCAAAAA
CTTATTCACATGAGAACTGTCTCACTCTTGGTTCTTGGACGAACATGATGTCAAACTACTTACGT
AAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTCGATTTCCTTTA
TAACTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAATATTTCAACATTCATGCT
CGGAAAATCCCATCATTTGGTCTAAAAGTTTGTCATTTTGTAAACAAGTTTAGGCCTTTAAATTA
AAAACTTATTTACGTGAGAATTGTATCTCCTTGGCTGTTGGACGAACTTTCGAACTAGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATACAAGACGATCCATTCCTTTGAGCAAA
TTTCCAAACATTCCATGCTTGAGAATCACATCATTTGGTCAAATAGTTTGTCATTTGACCAAACA
AGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTCTCTCTTGGCTCTTGGACAAA
CTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACAT
CCAAACTTGTCAAACTTTTACGATTTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGCTCCA
TTCTTTCGAGCAATTTTTCGAACATCACATGCTCGGTAGTCGCATAATTTTGTCTAAATAGTTTG
TCTTTTTTGTAAACAAGTTTCGGTCCTCAAATG
Found at i:10425589 original size:61 final size:61
Alignment explanation
Indices: 10425465--10425704 Score: 287
Period size: 61 Copynumber: 4.0 Consensus size: 61
10425455 GTTAATTAAT
* * *
10425465 AACTTAGTTACGTGAGAATTG-TTCTCTCTTGGC-TCTTGGATGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTT-GCTTCTTGGATGAACATCCAAACTTGTC-AA
*
10425526 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAA
* * * **
10425587 AACTTATTCACTTGAGAATTGTTTCTCTCTTGGTTCTTGGACT-AACATCTGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA-TGAACATCCAAACTTGTCAA
* * * *
10425648 AAC---CTTACTTGAGAATTGTTTCTCTCTTG-TTCTTGGACGAACATCCGAACTTGTCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAA
10425705 CTTTTTCGAT
Statistics
Matches: 163, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
57 25 0.15
58 24 0.15
61 80 0.49
62 34 0.21
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGATGAACATCCAAACTTGTCAA
Found at i:10425626 original size:123 final size:117
Alignment explanation
Indices: 10425477--10425704 Score: 298
Period size: 123 Copynumber: 1.9 Consensus size: 117
10425467 CTTAGTTACG
* *
10425477 TGAGAATTGTTCTCTCTTGGCTCTTGGA-TGAAC-TTTCAAACTTGTCAAAAACTTATTTACGTG
1 TGAGAATTGTTCTCTCTTGGCTCTTGGACT-AACATCT-AAACTTGTC-AAAAC---CTTACGTG
* *
10425540 AGAATTGTTTCTCTCTTGCTTCTTGGATGAACTTCCAAACTTGTCAAAACTTATTCACT
60 AGAATTGTTTCTCTCTTG-TTCTTGGACGAACATCCAAACTTGTCAAAACTTATTCACT
* * *
10425599 TGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCTGAACTTGTCAAAACCTTACTTGAGAAT
1 TGAGAATTG-TTCTCTCTTGGCTCTTGGACTAACATCTAAACTTGTCAAAACCTTACGTGAGAAT
*
10425664 TGTTTCTCTCTTGTTCTTGGACGAACATCCGAACTTGTCAA
65 TGTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAA
10425705 CTTTTTCGAT
Statistics
Matches: 95, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
118 25 0.26
119 24 0.25
122 14 0.15
123 29 0.31
124 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (117 bp):
TGAGAATTGTTCTCTCTTGGCTCTTGGACTAACATCTAAACTTGTCAAAACCTTACGTGAGAATT
GTTTCTCTCTTGTTCTTGGACGAACATCCAAACTTGTCAAAACTTATTCACT
Found at i:10433175 original size:3 final size:3
Alignment explanation
Indices: 10433167--10433191 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10433157 TCTAAGCAAA
10433167 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
10433192 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10433255 original size:3 final size:3
Alignment explanation
Indices: 10433249--10433277 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10433239 ATAATAATAA
10433249 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10433278 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10433545 original size:43 final size:43
Alignment explanation
Indices: 10433497--10434407 Score: 516
Period size: 43 Copynumber: 21.0 Consensus size: 43
10433487 AATCGGACAC
* *
10433497 CATCGGCAACTTGG-GCCGATGGATGTGCGGGACCATCGGGAGG
1 CATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGAAG
* * * * * *
10433540 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10433583 CATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCGTCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
** * *
10433626 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
** * *
10433669 CATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGAAC
1 CATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10433712 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10433755 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10433798 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGAACCATCGGGAAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-AAG
* * * *
10433842 CATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
** * ***
10433885 CATCGATAACAAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * * *
10433928 TATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* **
10433971 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10434014 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10434057 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * ** *
10434100 CATCGGTAACTCAG-GCCGATGG-TGGTGCGAGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
*
10434143 CATCGGACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGG-CACC-TTGG----T---GCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * *
10434196 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10434239 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10434282 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
* *
10434325 CATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * *
10434368 CATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
10434408 CACCGTCGGG
Statistics
Matches: 673, Mismatches: 132, Indels: 127
0.72 0.14 0.14
Matches are distributed among these distances:
42 52 0.08
43 495 0.74
44 76 0.11
45 8 0.01
47 1 0.00
51 3 0.00
52 4 0.01
53 34 0.05
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGAAG
Found at i:10433783 original size:86 final size:85
Alignment explanation
Indices: 10433693--10434416 Score: 641
Period size: 86 Copynumber: 8.3 Consensus size: 85
10433683 GCCGATGGTG
* * *
10433693 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGAT-GTGCGGGACCATCGGGAAG
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GG-TGGTGCGGGACCATCGGGAAG
*
10433755 TATCGGCACCTTGGTGCCTTCGAT
62 CATCGGCACCTTGGTGCCTTCGAT
* ** *
10433779 GTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCA
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGG-AAGCA
10433844 TCGGCACCTTGGTGCC-TCGGAT
64 TCGGCACCTTGGTGCCTTC-GAT
* * ** *** *
10433866 GTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
*
10433931 CGGCACCCTGGTGCCTTCGAT
65 CGGCACCTTGGTGCCTTCGAT
**
10433952 GTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
10434017 CGGCACCTTGGTGCC-TCGGAT
65 CGGCACCTTGGTGCCTTC-GAT
* ** * * * * * *
10434038 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GAACAC
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AG
* * *
10434100 CATCGGTAACTCAGGCCGATGGTG-GTGCGA-
62 CATCGG-----CA--CC-TTGGTGCCTTCGAT
**
10434130 GACCAT-CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGA
1 G----TGCGGG-AGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGA
10434194 AGCATCGGCACCTTGGTGCCTTCGAT
60 AGCATCGGCACCTTGGTGCCTTCGAT
* * * * *
10434220 GTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GGACACC
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AGC
*
10434283 ATCGGCACCTAGGTGCC-TCGAAT
63 ATCGGCACCTTGGTGCCTTCG-AT
*
10434306 GTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
* *
10434371 CGGGACCTAGGTGCCTT-GCAT
65 CGGCACCTTGGTGCCTTCG-AT
* *
10434392 GTGCGGGAGCATGGGACACCGTCGG
1 GTGCGGGAGCATCGGACACCATCGG
10434417 GCCAAAAAAA
Statistics
Matches: 527, Mismatches: 70, Indels: 82
0.78 0.10 0.12
Matches are distributed among these distances:
85 21 0.04
86 329 0.62
87 99 0.19
88 5 0.01
89 6 0.01
90 1 0.00
91 4 0.01
92 1 0.00
93 4 0.01
94 6 0.01
95 12 0.02
96 37 0.07
97 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCCATGGTGGTGCGGGACCATCGGGAAGCATC
GGCACCTTGGTGCCTTCGAT
Found at i:10433935 original size:130 final size:129
Alignment explanation
Indices: 10433659--10433922 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
10433649 TGTGCAAGAG
* * *
10433659 CATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
* ** * * *** * *
10433724 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
*
10433788 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAAGCATCGGCACC
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACC
* * * *
10433852 TTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGAT-GGTGGTGCGG
64 TTGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCC-ATCGAT-GTGCGG
10433915 GAC
127 GAC
10433918 CATCG
1 CATCG
10433923 GGAAGTATCG
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
128 1 0.01
129 50 0.44
130 62 0.55
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
Found at i:10434038 original size:302 final size:301
Alignment explanation
Indices: 10433488--10434153 Score: 1032
Period size: 302 Copynumber: 2.2 Consensus size: 301
10433478 ATCGGACACA
* ** * * *
10433488 ATCGGACACCATCGGCAACTTGGGCCGATGGAT-GTGCGGGACCATCGGGAGGTATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGAACCATCGGGAAGCATCGGCACCTT
* * **
10433552 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACC
65 GGTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACC
* * * * *
10433617 GTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCA
130 ATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAA
10433682 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
195 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
10433747 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
260 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
10433789 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGG-AAGCATCGGCACCTT
** *
10433854 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGAC
65 GGTGCCTTC-GATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGAC
* * **
10433918 CATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTA
129 CATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTA
* *
10433983 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
194 AGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
10434048 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
259 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
* *
10434091 ATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGC-GAGACCATCGGGAAGCATCGGACACC
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGA-ACCATCGGGAAGCATCGG-CACC
10434154 ATCGGCAACT
Statistics
Matches: 334, Mismatches: 26, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
300 1 0.00
301 56 0.17
302 277 0.83
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (301 bp):
ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAGCATCGGCACCTTG
GTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACCA
TCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAG
GCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCAT
CGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
Found at i:10434044 original size:129 final size:130
Alignment explanation
Indices: 10433497--10434320 Score: 572
Period size: 129 Copynumber: 6.3 Consensus size: 130
10433487 AATCGGACAC
* * * *
10433497 CATCGGCAACTTGG-GCCGAT-GGATGTGCGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTT
1 CATCGGCACCTTGGTGCC-ATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTT
* * *
10433560 CGATGTGCGGGAGCATCGAACACCATCGGCAACTCAG-GCCGAT-GGTGGTGCGGGACCGTCGGG
65 CGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGG
10433623 AAG
128 AAG
* ** * * * *
10433626 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACACCATCGGCTACTC-AG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGC-ACCCTGGTGCC-
* * * * * *
10433687 AT-GGTGGTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
10433749 GGGAAG
125 GGGAAG
* * * * * * *
10433755 TATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACACCATCGGCA-ACTAAG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGCACCCT-GGTGCC-
* * * * * * * * * *
10433816 AT-GGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
* *
10433879 GGGCAC
125 GGGAAG
** * *** *
10433885 CATCGATAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCT
1 CATCGGCACCTTGGTGCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCT
*
10433947 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGG
64 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGG
10434010 GAAG
127 GAAG
* *
10434014 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
* * * *
10434078 GATGTGCGGGAGCATCGAACACCATCGGTAACTCAG-GCCGAT-GGTGGTGCGAGACCATCGGGA
66 GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGGA
10434141 AG
129 AG
*
10434143 CATCGGACACCATCGGCAACTAAGGCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACC
1 CATCGG-CACC-TTGG----T---GCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACC
* * * * *
10434206 TTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGA
55 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGA
* *
10434271 GCATC-GGACAC
120 CCATCGGGA-AG
* * *
10434282 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATCGG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGG
10434321 ACACCATCGG
Statistics
Matches: 566, Mismatches: 85, Indels: 88
0.77 0.12 0.12
Matches are distributed among these distances:
127 1 0.00
128 17 0.03
129 316 0.56
130 107 0.19
131 12 0.02
133 1 0.00
135 1 0.00
137 3 0.01
138 11 0.02
139 91 0.16
140 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (130 bp):
CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGACCATCGGGAAG
Found at i:10434201 original size:53 final size:53
Alignment explanation
Indices: 10434084--10434205 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
10434074 CTTCGATGTG
* * *
10434084 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
10434136 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
10434189 CGGGAAGCATCGG-CACC
1 CGGGAAGCATCGGACACC
10434206 TTGGTGCCTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 8 0.12
53 57 0.88
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.13
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:10434223 original size:182 final size:173
Alignment explanation
Indices: 10433693--10434416 Score: 744
Period size: 172 Copynumber: 4.2 Consensus size: 173
10433683 GCCGATGGTG
* * * * *
10433693 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA-AG
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACAC
* ** ** *
10433755 TATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATG
64 CATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATG
*
10433819 GTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGAT
128 GTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GAT
* ** * *** * * * *
10433866 GTGCGAGAGCATCGGG-CACCATCGATAACAAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-A
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GAACA
** ** **
10433927 GTATCGGCACCCTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
63 CCATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
10433991 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGAT
127 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GAT
* **
10434038 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
*
10434102 TCGGTAACTCAGGCCGATGGTG-GTGCGAGACCAT-CGGGAAGCATCGGACACCATCGGCAACTA
66 TCGG-----CA--CCGA-GGTGCCT-CGA-A-CATGCGGG-AGCATCGGACACCATCGGCAACTA
10434165 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
119 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
*
10434220 GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
* ** **
10434284 TCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTG
66 TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
* *
10434349 GTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-GCAT
131 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-AT
*
10434392 GTGCGGGAGCAT-GGGACACCGTCGG
1 GTGCGGGAGCATCGGGACACCATCGG
10434417 GCCAAAAAAA
Statistics
Matches: 478, Mismatches: 46, Indels: 55
0.83 0.08 0.09
Matches are distributed among these distances:
171 3 0.01
172 170 0.36
173 133 0.28
174 8 0.02
175 4 0.01
177 4 0.01
178 1 0.00
179 4 0.01
180 4 0.01
181 8 0.02
182 137 0.29
183 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (173 bp):
GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
Found at i:10435114 original size:43 final size:43
Alignment explanation
Indices: 10435053--10436211 Score: 856
Period size: 43 Copynumber: 27.4 Consensus size: 43
10435043 TGTTCCAGAC
*
10435053 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10435096 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10435139 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
10435182 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10435225 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10435268 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
**
10435311 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10435354 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10435397 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10435440 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * **
10435483 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10435526 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10435569 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10435612 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
10435655 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10435691 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10435730 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10435773 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
10435816 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
*
10435859 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10435894 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10435937 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
10435980 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10436023 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10436066 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10436109 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10436152 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10436195 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
10436212 GCTAAAAATA
Statistics
Matches: 905, Mismatches: 128, Indels: 166
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 7 0.01
35 31 0.03
36 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 53 0.06
43 739 0.82
44 49 0.05
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10435227 original size:129 final size:129
Alignment explanation
Indices: 10435054--10436211 Score: 982
Period size: 129 Copynumber: 9.1 Consensus size: 129
10435044 GTTCCAGACA
* *
10435054 TGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10435119 TCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCCTGGT
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
** * *
10435183 TGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* * * * **
10435247 ATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATGG
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCCTGG
10435311 T
129 T
* * **
10435312 GGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCCTCGGATGTGCGGGA-CCATCGGGA-A
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TC-GGACA
** * * * ** *
10435374 GTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT
63 CCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CT
10435438 GGT
127 GGT
* * * * *
10435441 GGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCCTCGGATGTGCGAG-GCCATCGGGCAC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGACAC
* ** * * ** * *
10435504 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCT
64 CATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCC
* *
10435566 TCGA
126 TGGT
* * **
10435570 TGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG-TGGTGCGGGA-CCGTCGAGA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCC-TCG-GA
* * * * * * * *
10435631 -AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG--G
61 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCC
10435688 T-GT
126 TGGT
* * * * * *
10435691 T-T--GGGACCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
* * * * * *
10435752 ATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTG-CCT
65 ATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCCT
*
10435813 CGGA
127 -GGT
* * ** * *
10435817 TGTGCGGGACCATTGGGA-AGTATCGGCACCATGGTGCCTTC-GATGTGCGGGTGCCTCGGACAC
1 TGTGCGGGAGCA-TCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
* * *
10435880 CATCGGCA--------CCTTGGATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTG-CCTCG
64 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-G
*
10435936 GA
128 GT
* *
10435938 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* *
10436002 ATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
* *
10436067 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10436132 TCGGCACCTTGCTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGA
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
10436196 TGTGCGGGAGCATCGG
1 TGTGCGGGAGCATCGG
10436212 GCTAAAAATA
Statistics
Matches: 827, Mismatches: 142, Indels: 120
0.76 0.13 0.11
Matches are distributed among these distances:
117 7 0.01
118 55 0.07
119 16 0.02
120 8 0.01
121 95 0.11
122 4 0.00
123 3 0.00
124 4 0.00
126 4 0.00
127 1 0.00
128 23 0.03
129 579 0.70
130 28 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (129 bp):
TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
Found at i:10435714 original size:75 final size:76
Alignment explanation
Indices: 10435590--10435822 Score: 236
Period size: 75 Copynumber: 2.9 Consensus size: 76
10435580 CATCGGACAC
* *
10435590 CATCGGTAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
*
10435655 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
10435666 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
10435730 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * *
10435741 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTC
10435806 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
10435823 GGACCATTGG
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
75 51 0.39
76 23 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.08
86 42 0.32
ACGTcount: A:0.18, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:10443630 original size:3 final size:3
Alignment explanation
Indices: 10443622--10443646 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10443612 TCTAAGCAAA
10443622 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
10443647 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10443712 original size:3 final size:3
Alignment explanation
Indices: 10443706--10443731 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
10443696 AATAATAATA
10443706 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
10443732 ACTTTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:10443999 original size:43 final size:43
Alignment explanation
Indices: 10443951--10444861 Score: 516
Period size: 43 Copynumber: 21.0 Consensus size: 43
10443941 AATCGGACAC
* *
10443951 CATCGGCAACTTGG-GCCGATGGATGTGCGGGACCATCGGGAGG
1 CATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGAAG
* * * * * *
10443994 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10444037 CATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCGTCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
** * *
10444080 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
** * *
10444123 CATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGAAC
1 CATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10444166 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10444209 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10444252 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGAACCATCGGGAAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-AAG
* * * *
10444296 CATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
** * ***
10444339 CATCGATAACAAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * * *
10444382 TATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* **
10444425 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10444468 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10444511 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * ** *
10444554 CATCGGTAACTCAG-GCCGATGG-TGGTGCGAGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
*
10444597 CATCGGACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGG-CACC-TTGG----T---GCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * *
10444650 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10444693 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10444736 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
* *
10444779 CATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * *
10444822 CATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
10444862 CACCGTCGGG
Statistics
Matches: 673, Mismatches: 132, Indels: 127
0.72 0.14 0.14
Matches are distributed among these distances:
42 52 0.08
43 495 0.74
44 76 0.11
45 8 0.01
47 1 0.00
51 3 0.00
52 4 0.01
53 34 0.05
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGAAG
Found at i:10444237 original size:86 final size:85
Alignment explanation
Indices: 10444147--10444870 Score: 641
Period size: 86 Copynumber: 8.3 Consensus size: 85
10444137 GCCGATGGTG
* * *
10444147 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGAT-GTGCGGGACCATCGGGAAG
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GG-TGGTGCGGGACCATCGGGAAG
*
10444209 TATCGGCACCTTGGTGCCTTCGAT
62 CATCGGCACCTTGGTGCCTTCGAT
* ** *
10444233 GTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCA
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGG-AAGCA
10444298 TCGGCACCTTGGTGCC-TCGGAT
64 TCGGCACCTTGGTGCCTTC-GAT
* * ** *** *
10444320 GTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
*
10444385 CGGCACCCTGGTGCCTTCGAT
65 CGGCACCTTGGTGCCTTCGAT
**
10444406 GTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
10444471 CGGCACCTTGGTGCC-TCGGAT
65 CGGCACCTTGGTGCCTTC-GAT
* ** * * * * * *
10444492 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GAACAC
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AG
* * *
10444554 CATCGGTAACTCAGGCCGATGGTG-GTGCGA-
62 CATCGG-----CA--CC-TTGGTGCCTTCGAT
**
10444584 GACCAT-CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGA
1 G----TGCGGG-AGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGA
10444648 AGCATCGGCACCTTGGTGCCTTCGAT
60 AGCATCGGCACCTTGGTGCCTTCGAT
* * * * *
10444674 GTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GGACACC
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AGC
*
10444737 ATCGGCACCTAGGTGCC-TCGAAT
63 ATCGGCACCTTGGTGCCTTCG-AT
*
10444760 GTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
* *
10444825 CGGGACCTAGGTGCCTT-GCAT
65 CGGCACCTTGGTGCCTTCG-AT
* *
10444846 GTGCGGGAGCATGGGACACCGTCGG
1 GTGCGGGAGCATCGGACACCATCGG
10444871 GCCAAAAAAA
Statistics
Matches: 527, Mismatches: 70, Indels: 82
0.78 0.10 0.12
Matches are distributed among these distances:
85 21 0.04
86 329 0.62
87 99 0.19
88 5 0.01
89 6 0.01
90 1 0.00
91 4 0.01
92 1 0.00
93 4 0.01
94 6 0.01
95 12 0.02
96 37 0.07
97 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCCATGGTGGTGCGGGACCATCGGGAAGCATC
GGCACCTTGGTGCCTTCGAT
Found at i:10444389 original size:130 final size:129
Alignment explanation
Indices: 10444113--10444376 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
10444103 TGTGCAAGAG
* * *
10444113 CATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
* ** * * *** * *
10444178 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
*
10444242 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAAGCATCGGCACC
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACC
* * * *
10444306 TTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGAT-GGTGGTGCGG
64 TTGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCC-ATCGAT-GTGCGG
10444369 GAC
127 GAC
10444372 CATCG
1 CATCG
10444377 GGAAGTATCG
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
128 1 0.01
129 50 0.44
130 62 0.55
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
Found at i:10444492 original size:302 final size:301
Alignment explanation
Indices: 10443942--10444607 Score: 1032
Period size: 302 Copynumber: 2.2 Consensus size: 301
10443932 ATCGGACACA
* ** * * *
10443942 ATCGGACACCATCGGCAACTTGGGCCGATGGAT-GTGCGGGACCATCGGGAGGTATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGAACCATCGGGAAGCATCGGCACCTT
* * **
10444006 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACC
65 GGTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACC
* * * * *
10444071 GTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCA
130 ATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAA
10444136 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
195 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
10444201 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
260 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
10444243 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGG-AAGCATCGGCACCTT
** *
10444308 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGAC
65 GGTGCCTTC-GATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGAC
* * **
10444372 CATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTA
129 CATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTA
* *
10444437 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
194 AGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
10444502 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
259 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
* *
10444545 ATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGC-GAGACCATCGGGAAGCATCGGACACC
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGA-ACCATCGGGAAGCATCGG-CACC
10444608 ATCGGCAACT
Statistics
Matches: 334, Mismatches: 26, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
300 1 0.00
301 56 0.17
302 277 0.83
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (301 bp):
ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAGCATCGGCACCTTG
GTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACCA
TCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAG
GCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCAT
CGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
Found at i:10444498 original size:129 final size:130
Alignment explanation
Indices: 10443951--10444774 Score: 572
Period size: 129 Copynumber: 6.3 Consensus size: 130
10443941 AATCGGACAC
* * * *
10443951 CATCGGCAACTTGG-GCCGAT-GGATGTGCGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTT
1 CATCGGCACCTTGGTGCC-ATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTT
* * *
10444014 CGATGTGCGGGAGCATCGAACACCATCGGCAACTCAG-GCCGAT-GGTGGTGCGGGACCGTCGGG
65 CGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGG
10444077 AAG
128 AAG
* ** * * * *
10444080 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACACCATCGGCTACTC-AG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGC-ACCCTGGTGCC-
* * * * * *
10444141 AT-GGTGGTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
10444203 GGGAAG
125 GGGAAG
* * * * * * *
10444209 TATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACACCATCGGCA-ACTAAG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGCACCCT-GGTGCC-
* * * * * * * * * *
10444270 AT-GGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
* *
10444333 GGGCAC
125 GGGAAG
** * *** *
10444339 CATCGATAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCT
1 CATCGGCACCTTGGTGCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCT
*
10444401 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGG
64 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGG
10444464 GAAG
127 GAAG
* *
10444468 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
* * * *
10444532 GATGTGCGGGAGCATCGAACACCATCGGTAACTCAG-GCCGAT-GGTGGTGCGAGACCATCGGGA
66 GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGGA
10444595 AG
129 AG
*
10444597 CATCGGACACCATCGGCAACTAAGGCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACC
1 CATCGG-CACC-TTGG----T---GCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACC
* * * * *
10444660 TTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGA
55 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGA
* *
10444725 GCATC-GGACAC
120 CCATCGGGA-AG
* * *
10444736 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATCGG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGG
10444775 ACACCATCGG
Statistics
Matches: 566, Mismatches: 85, Indels: 88
0.77 0.12 0.12
Matches are distributed among these distances:
127 1 0.00
128 17 0.03
129 316 0.56
130 107 0.19
131 12 0.02
133 1 0.00
135 1 0.00
137 3 0.01
138 11 0.02
139 91 0.16
140 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (130 bp):
CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGACCATCGGGAAG
Found at i:10444655 original size:53 final size:53
Alignment explanation
Indices: 10444538--10444659 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
10444528 CTTCGATGTG
* * *
10444538 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
10444590 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
10444643 CGGGAAGCATCGG-CACC
1 CGGGAAGCATCGGACACC
10444660 TTGGTGCCTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 8 0.12
53 57 0.88
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.13
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:10444677 original size:182 final size:173
Alignment explanation
Indices: 10444147--10444870 Score: 744
Period size: 172 Copynumber: 4.2 Consensus size: 173
10444137 GCCGATGGTG
* * * * *
10444147 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA-AG
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACAC
* ** ** *
10444209 TATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATG
64 CATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATG
*
10444273 GTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGAT
128 GTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GAT
* ** * *** * * * *
10444320 GTGCGAGAGCATCGGG-CACCATCGATAACAAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-A
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GAACA
** ** **
10444381 GTATCGGCACCCTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
63 CCATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
10444445 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGAT
127 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GAT
* **
10444492 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
*
10444556 TCGGTAACTCAGGCCGATGGTG-GTGCGAGACCAT-CGGGAAGCATCGGACACCATCGGCAACTA
66 TCGG-----CA--CCGA-GGTGCCT-CGA-A-CATGCGGG-AGCATCGGACACCATCGGCAACTA
10444619 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
119 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
*
10444674 GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
* ** **
10444738 TCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTG
66 TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
* *
10444803 GTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-GCAT
131 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-AT
*
10444846 GTGCGGGAGCAT-GGGACACCGTCGG
1 GTGCGGGAGCATCGGGACACCATCGG
10444871 GCCAAAAAAA
Statistics
Matches: 478, Mismatches: 46, Indels: 55
0.83 0.08 0.09
Matches are distributed among these distances:
171 3 0.01
172 170 0.36
173 133 0.28
174 8 0.02
175 4 0.01
177 4 0.01
178 1 0.00
179 4 0.01
180 4 0.01
181 8 0.02
182 137 0.29
183 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (173 bp):
GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
Found at i:10445568 original size:43 final size:43
Alignment explanation
Indices: 10445507--10446665 Score: 856
Period size: 43 Copynumber: 27.4 Consensus size: 43
10445497 TGTTCCAGAC
*
10445507 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10445550 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10445593 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
10445636 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10445679 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10445722 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
**
10445765 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10445808 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10445851 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10445894 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * **
10445937 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10445980 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10446023 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10446066 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
10446109 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10446145 -T-T--GGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10446184 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10446227 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
10446270 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
*
10446313 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10446348 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10446391 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
10446434 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10446477 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10446520 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10446563 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10446606 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10446649 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
10446666 GCTAAAAATA
Statistics
Matches: 905, Mismatches: 128, Indels: 166
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 8 0.01
34 7 0.01
35 31 0.03
36 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 53 0.06
43 739 0.82
44 49 0.05
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10445681 original size:129 final size:129
Alignment explanation
Indices: 10445508--10446665 Score: 982
Period size: 129 Copynumber: 9.1 Consensus size: 129
10445498 GTTCCAGACA
* *
10445508 TGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10445573 TCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCCTGGT
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
** * *
10445637 TGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* * * * **
10445701 ATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATGG
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCCTGG
10445765 T
129 T
* * **
10445766 GGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCCTCGGATGTGCGGGA-CCATCGGGA-A
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TC-GGACA
** * * * ** *
10445828 GTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT
63 CCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CT
10445892 GGT
127 GGT
* * * * *
10445895 GGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCCTCGGATGTGCGAG-GCCATCGGGCAC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGACAC
* ** * * ** * *
10445958 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCT
64 CATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCC
* *
10446020 TCGA
126 TGGT
* * **
10446024 TGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG-TGGTGCGGGA-CCGTCGAGA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCC-TCG-GA
* * * * * * * *
10446085 -AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG--G
61 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCC
10446142 T-GT
126 TGGT
* * * * * *
10446145 T-T--GGGACCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
* * * * * *
10446206 ATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTG-CCT
65 ATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCCT
*
10446267 CGGA
127 -GGT
* * ** * *
10446271 TGTGCGGGACCATTGGGA-AGTATCGGCACCATGGTGCCTTC-GATGTGCGGGTGCCTCGGACAC
1 TGTGCGGGAGCA-TCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
* * *
10446334 CATCGGCA--------CCTTGGATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTG-CCTCG
64 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-G
*
10446390 GA
128 GT
* *
10446392 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* *
10446456 ATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
* *
10446521 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10446586 TCGGCACCTTGCTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGA
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
10446650 TGTGCGGGAGCATCGG
1 TGTGCGGGAGCATCGG
10446666 GCTAAAAATA
Statistics
Matches: 827, Mismatches: 142, Indels: 120
0.76 0.13 0.11
Matches are distributed among these distances:
117 7 0.01
118 55 0.07
119 16 0.02
120 8 0.01
121 95 0.11
122 4 0.00
123 3 0.00
124 4 0.00
126 4 0.00
127 1 0.00
128 23 0.03
129 579 0.70
130 28 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (129 bp):
TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
Found at i:10446168 original size:75 final size:76
Alignment explanation
Indices: 10446044--10446276 Score: 236
Period size: 75 Copynumber: 2.9 Consensus size: 76
10446034 CATCGGACAC
* *
10446044 CATCGGTAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
*
10446109 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
10446120 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
10446184 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * *
10446195 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTC
10446260 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
10446277 GGACCATTGG
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
75 51 0.39
76 23 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.08
86 42 0.32
ACGTcount: A:0.18, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:10460437 original size:3 final size:3
Alignment explanation
Indices: 10460429--10460453 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10460419 TCTAAGCAAA
10460429 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
10460454 AATTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:10460520 original size:3 final size:3
Alignment explanation
Indices: 10460514--10460542 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10460504 ATAATAATAA
10460514 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10460543 ACTTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10460810 original size:43 final size:43
Alignment explanation
Indices: 10460762--10461672 Score: 516
Period size: 43 Copynumber: 21.0 Consensus size: 43
10460752 AATCGGACAC
* *
10460762 CATCGGCAACTTGG-GCCGATGGATGTGCGGGACCATCGGGAGG
1 CATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGAAG
* * * * * *
10460805 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10460848 CATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCGTCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
** * *
10460891 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
** * *
10460934 CATCGGCTA-CTCAG-GCCGATGG-TGGTGCGCGACCATCGGGAAC
1 CATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10460977 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10461020 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* ** *
10461063 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGAACCATCGGGAAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-AAG
* * * *
10461107 CATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
** * ***
10461150 CATCGATAACAAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * * *
10461193 TATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* **
10461236 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
10461279 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGAAG
* * * * * *
10461322 TATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * ** *
10461365 CATCGGTAACTCAG-GCCGATGG-TGGTGCGAGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
*
10461408 CATCGGACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGG-CACC-TTGG----T---GCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * *
10461461 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10461504 CATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA-AG
* * * *
10461547 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATC-GGACAC
1 CATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA-AG
* *
10461590 CATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGAAG
1 CATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGAAG
* * * * *
10461633 CATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
10461673 CACCGTCGGG
Statistics
Matches: 673, Mismatches: 132, Indels: 127
0.72 0.14 0.14
Matches are distributed among these distances:
42 52 0.08
43 495 0.74
44 76 0.11
45 8 0.01
47 1 0.00
51 3 0.00
52 4 0.01
53 34 0.05
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
CATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGAAG
Found at i:10461048 original size:86 final size:85
Alignment explanation
Indices: 10460958--10461681 Score: 641
Period size: 86 Copynumber: 8.3 Consensus size: 85
10460948 GCCGATGGTG
* * *
10460958 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGAT-GTGCGGGACCATCGGGAAG
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GG-TGGTGCGGGACCATCGGGAAG
*
10461020 TATCGGCACCTTGGTGCCTTCGAT
62 CATCGGCACCTTGGTGCCTTCGAT
* ** *
10461044 GTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCA
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGG-AAGCA
10461109 TCGGCACCTTGGTGCC-TCGGAT
64 TCGGCACCTTGGTGCCTTC-GAT
* * ** *** *
10461131 GTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
*
10461196 CGGCACCCTGGTGCCTTCGAT
65 CGGCACCTTGGTGCCTTCGAT
**
10461217 GTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
10461282 CGGCACCTTGGTGCC-TCGGAT
65 CGGCACCTTGGTGCCTTC-GAT
* ** * * * * * *
10461303 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GAACAC
1 GTGCGGGAGCATC-GGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AG
* * *
10461365 CATCGGTAACTCAGGCCGATGGTG-GTGCGA-
62 CATCGG-----CA--CC-TTGGTGCCTTCGAT
**
10461395 GACCAT-CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGA
1 G----TGCGGG-AGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGA
10461459 AGCATCGGCACCTTGGTGCCTTCGAT
60 AGCATCGGCACCTTGGTGCCTTCGAT
* * * * *
10461485 GTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGAT-GTGCGGGAGCATC-GGACACC
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGG-GCCAT-GGTGGTGCGGGACCATCGGGA-AGC
*
10461548 ATCGGCACCTAGGTGCC-TCGAAT
63 ATCGGCACCTTGGTGCCTTCG-AT
*
10461571 GTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGCAT
1 GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCC-ATGGTGGTGCGGGACCATCGGGAAGCAT
* *
10461636 CGGGACCTAGGTGCCTT-GCAT
65 CGGCACCTTGGTGCCTTCG-AT
* *
10461657 GTGCGGGAGCATGGGACACCGTCGG
1 GTGCGGGAGCATCGGACACCATCGG
10461682 GCCAAAAAAA
Statistics
Matches: 527, Mismatches: 70, Indels: 82
0.78 0.10 0.12
Matches are distributed among these distances:
85 21 0.04
86 329 0.62
87 99 0.19
88 5 0.01
89 6 0.01
90 1 0.00
91 4 0.01
92 1 0.00
93 4 0.01
94 6 0.01
95 12 0.02
96 37 0.07
97 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCATCGGACACCATCGGCAACTTGGGCCATGGTGGTGCGGGACCATCGGGAAGCATC
GGCACCTTGGTGCCTTCGAT
Found at i:10461200 original size:130 final size:129
Alignment explanation
Indices: 10460924--10461187 Score: 309
Period size: 130 Copynumber: 2.0 Consensus size: 129
10460914 TGTGCAAGAG
* * *
10460924 CATCGGACACCATCGGCTACTCAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
* ** * * *** * *
10460989 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
*
10461053 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCG-GAACCATCGGGAAAGCATCGGCACC
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCG-ACCATCGGG-AACCATCGGCACC
* * * *
10461117 TTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAG-GCCGAT-GGTGGTGCGG
64 TTGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCC-ATCGAT-GTGCGG
10461180 GAC
127 GAC
10461183 CATCG
1 CATCG
10461188 GGAAGTATCG
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
128 1 0.01
129 50 0.44
130 62 0.55
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGACAACAAAGTGCCATCGATGTGCGGGAC
Found at i:10461303 original size:302 final size:301
Alignment explanation
Indices: 10460753--10461418 Score: 1032
Period size: 302 Copynumber: 2.2 Consensus size: 301
10460743 ATCGGACACA
* ** * * *
10460753 ATCGGACACCATCGGCAACTTGGGCCGATGGAT-GTGCGGGACCATCGGGAGGTATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGG-TGGTGCGGAACCATCGGGAAGCATCGGCACCTT
* * **
10460817 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACC
65 GGTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACC
* * * * *
10460882 GTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTCA
130 ATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAA
10460947 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
195 GGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCA
10461012 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
260 TCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
10461054 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTT
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGG-AAGCATCGGCACCTT
** *
10461119 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGATAACAAAGGCCGATGGTGGTGCGGGAC
65 GGTGCCTTC-GATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGAC
* * **
10461183 CATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTA
129 CATCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTA
* *
10461248 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
194 AGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACC
10461313 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
259 ATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
* *
10461356 ATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGC-GAGACCATCGGGAAGCATCGGACACC
1 ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGA-ACCATCGGGAAGCATCGG-CACC
10461419 ATCGGCAACT
Statistics
Matches: 334, Mismatches: 26, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
300 1 0.00
301 56 0.17
302 277 0.83
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (301 bp):
ATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGAACCATCGGGAAGCATCGGCACCTTG
GTGCCTTCGATGTGCGAGAGCATCGAACACCATCGACAACAAAGGCCGATGGTGGTGCGGGACCA
TCGGGAAGCATCGGCACCCTGGTGCCTACGATGTGCAAGAGCATCGGACACCATCGGCAACTAAG
GCCGATGGTGGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCAT
CGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGC
Found at i:10461309 original size:129 final size:130
Alignment explanation
Indices: 10460762--10461585 Score: 572
Period size: 129 Copynumber: 6.3 Consensus size: 130
10460752 AATCGGACAC
* * * *
10460762 CATCGGCAACTTGG-GCCGAT-GGATGTGCGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTT
1 CATCGGCACCTTGGTGCC-ATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTT
* * *
10460825 CGATGTGCGGGAGCATCGAACACCATCGGCAACTCAG-GCCGAT-GGTGGTGCGGGACCGTCGGG
65 CGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGG
10460888 AAG
128 AAG
* ** * * * *
10460891 CATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGACACCATCGGCTACTC-AG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGC-ACCCTGGTGCC-
* * * * * *
10460952 AT-GGTGGTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
10461014 GGGAAG
125 GGGAAG
* * * * * * *
10461020 TATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACACCATCGGCA-ACTAAG-GCCG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGA-AGCATCGGCACCCT-GGTGCC-
* * * * * * * * * *
10461081 AT-GGTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATC
63 TTCGAT-GTGCGGGAGCATC-GGACACCATCGGCAACTTAGTGCCATCGG-TGTGCGGGACCATC
* *
10461144 GGGCAC
125 GGGAAG
** * *** *
10461150 CATCGATAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCT
1 CATCGGCACCTTGGTGCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCT
*
10461212 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGG
64 TCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGG
10461275 GAAG
127 GAAG
* *
10461279 CATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
* * * *
10461343 GATGTGCGGGAGCATCGAACACCATCGGTAACTCAG-GCCGAT-GGTGGTGCGAGACCATCGGGA
66 GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCC-ATCGGT-GTGCGGGACCATCGGGA
10461406 AG
129 AG
*
10461408 CATCGGACACCATCGGCAACTAAGGCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCGGCACC
1 CATCGG-CACC-TTGG----T---GCC-ATCGGAT-GTGCGGGACCATCGGGAAGCATCGGCACC
* * * * *
10461471 TTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGA
55 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGA
* *
10461536 GCATC-GGACAC
120 CCATCGGGA-AG
* * *
10461547 CATCGGCACCTAGGTGCC-TCGAATGTGCGGGAGCATCGG
1 CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGG
10461586 ACACCATCGG
Statistics
Matches: 566, Mismatches: 85, Indels: 88
0.77 0.12 0.12
Matches are distributed among these distances:
127 1 0.00
128 17 0.03
129 316 0.56
130 107 0.19
131 12 0.02
133 1 0.00
135 1 0.00
137 3 0.01
138 11 0.02
139 91 0.16
140 6 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (130 bp):
CATCGGCACCTTGGTGCCATCGGATGTGCGGGACCATCGGGAAGCATCGGCACCCTGGTGCCTTC
GATGTGCGGGAGCATCGGACACCATCGGCAACTTAGTGCCATCGGTGTGCGGGACCATCGGGAAG
Found at i:10461466 original size:53 final size:53
Alignment explanation
Indices: 10461349--10461470 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 53
10461339 CTTCGATGTG
* * *
10461349 CGGG-AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
*
10461401 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCAT
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
10461454 CGGGAAGCATCGG-CACC
1 CGGGAAGCATCGGACACC
10461471 TTGGTGCCTT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 8 0.12
53 57 0.88
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.13
Consensus pattern (53 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCAT
Found at i:10461488 original size:182 final size:173
Alignment explanation
Indices: 10460958--10461681 Score: 744
Period size: 172 Copynumber: 4.2 Consensus size: 173
10460948 GCCGATGGTG
* * * * *
10460958 GTGCGCGACCATCGGGA-ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA-AG
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATC-GAACAC
* ** ** *
10461020 TATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATG
64 CATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATG
*
10461084 GTGGTGCGGAACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGAT
128 GTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GAT
* ** * *** * * * *
10461131 GTGCGAGAGCATCGGG-CACCATCGATAACAAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-A
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GAACA
** ** **
10461192 GTATCGGCACCCTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
63 CCATCGGCACCGAGGTGCC-TCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGAT
10461256 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGAT
127 GGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GAT
* **
10461303 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
*
10461367 TCGGTAACTCAGGCCGATGGTG-GTGCGAGACCAT-CGGGAAGCATCGGACACCATCGGCAACTA
66 TCGG-----CA--CCGA-GGTGCCT-CGA-A-CATGCGGG-AGCATCGGACACCATCGGCAACTA
10461430 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
119 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
*
10461485 GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCA
1 GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
* ** **
10461549 TCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGTG
66 TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
* *
10461614 GTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTT-GCAT
131 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-AT
*
10461657 GTGCGGGAGCAT-GGGACACCGTCGG
1 GTGCGGGAGCATCGGGACACCATCGG
10461682 GCCAAAAAAA
Statistics
Matches: 478, Mismatches: 46, Indels: 55
0.83 0.08 0.09
Matches are distributed among these distances:
171 3 0.01
172 170 0.36
173 133 0.28
174 8 0.02
175 4 0.01
177 4 0.01
178 1 0.00
179 4 0.01
180 4 0.01
181 8 0.02
182 137 0.29
183 2 0.00
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (173 bp):
GTGCGGGAGCATCGGGACACCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCA
TCGGCACCGAGGTGCCTCGAACATGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGAT
Found at i:10462378 original size:43 final size:43
Alignment explanation
Indices: 10462317--10463475 Score: 847
Period size: 43 Copynumber: 27.4 Consensus size: 43
10462307 TGTTCCAGAC
*
10462317 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10462360 ATGTGCGGGAGCCTCGGACACCATCGTCAACTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10462403 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
10462446 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10462489 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10462532 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
**
10462575 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10462618 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10462661 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10462704 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * **
10462747 ATGTGCGAG-GCCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10462790 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10462833 ATGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10462876 -TGGTGCGGGA-CCGTCGAGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TCG-GACACCATCGGCACCTTGGTGCC-TCGG
* * * * **
10462919 ATGTGCGGGAGCATCGG-CAACTTAGGC-CGATGGTG--T---
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10462955 -T-T--GGGA-CCGTCGGGA-AGCATCAGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10462994 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10463037 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* ** *
10463080 ATGTGCGGGA-CCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC--TCGGACACCATCGGCACCTTGGTGCC-TCGG
*
10463123 ATGTGCGGGTGCCTCGGACACCATCGGCACC----T---T-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10463158 ATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10463201 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
*
10463244 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10463287 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10463330 TTGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10463373 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGCTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10463416 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10463459 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCCTCGG
10463476 GCTAAAAATA
Statistics
Matches: 903, Mismatches: 130, Indels: 166
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.00
32 6 0.01
33 7 0.01
34 7 0.01
35 31 0.03
36 1 0.00
38 1 0.00
39 2 0.00
40 1 0.00
41 6 0.01
42 53 0.06
43 738 0.82
44 49 0.05
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10462491 original size:129 final size:129
Alignment explanation
Indices: 10462318--10463475 Score: 973
Period size: 129 Copynumber: 9.1 Consensus size: 129
10462308 GTTCCAGACA
* *
10462318 TGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10462383 TCGTCAACTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCCTGGT
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
** * *
10462447 TGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* * * * **
10462511 ATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATGG
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCCTGG
10462575 T
129 T
* * **
10462576 GGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCCTCGGATGTGCGGGA-CCATCGGGA-A
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TC-GGACA
** * * * ** *
10462638 GTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT
63 CCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-CT
10462702 GGT
127 GGT
* * * * *
10462705 GGTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCCTCGGATGTGCGAG-GCCATCGGGCAC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGACAC
* ** * * ** * *
10462768 CATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCT
64 CATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCC
* *
10462830 TCGA
126 TGGT
* * **
10462834 TGTGCGGGAGCATCGGACACCATCGGTAACTAAG-GCCGAT-GG-TGGTGCGGGA-CCGTCGAGA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCC-TCG-GA
* * * * * * * *
10462895 -AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG--G
61 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCC
10462952 T-GT
126 TGGT
* * * * * * *
10462955 T-T--GGGACCGTCGGGA-AGCATCAGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
* * * * * *
10463016 ATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTG-CCT
65 ATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCCT
*
10463077 CGGA
127 -GGT
* * ** * *
10463081 TGTGCGGGACCATTGGGA-AGTATCGGCACCATGGTGCCTTC-GATGTGCGGGTGCCTCGGACAC
1 TGTGCGGGAGCA-TCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
* * *
10463144 CATCGGCA--------CCTTGGATGTGCAGGAGCCTCGGACACCGTCGGCACCTTGGTG-CCTCG
64 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT-G
*
10463200 GA
128 GT
* *
10463202 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACACC
* *
10463266 ATCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
* *
10463331 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
* * * *
10463396 TCGGCACCTTGCTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGA
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
10463460 TGTGCGGGAGCATCGG
1 TGTGCGGGAGCATCGG
10463476 GCTAAAAATA
Statistics
Matches: 825, Mismatches: 144, Indels: 120
0.76 0.13 0.11
Matches are distributed among these distances:
117 7 0.01
118 54 0.07
119 16 0.02
120 8 0.01
121 95 0.12
122 4 0.00
123 3 0.00
124 4 0.00
126 4 0.00
127 1 0.00
128 23 0.03
129 578 0.70
130 28 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (129 bp):
TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTGGT
Found at i:10462981 original size:75 final size:76
Alignment explanation
Indices: 10462854--10463086 Score: 218
Period size: 75 Copynumber: 2.9 Consensus size: 76
10462844 CATCGGACAC
* * *
10462854 CATCGGTAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCAGCACCTCGGTGCCTACG
*
10462919 ATGTGCGGGAG
66 ATGTGCGAGAG
* ** * * *
10462930 CATCGGCAACTTAGGCCGATGGT-GTTTGGGACCGTCGGGAAGCATCAGCACCTTGGTGCCTAGG
1 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCAGCACCTCGGTGCCTACG
10462994 ATGTGCGAGAG
66 ATGTGCGAGAG
* * * * *
10463005 CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTT
1 CATCGG-CA--A-C--T-A---AGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCAGCACCTC
10463070 GGTGCCT-CGGATGTGCG
56 GGTGCCTAC-GATGTGCG
10463087 GGACCATTGG
Statistics
Matches: 128, Mismatches: 17, Indels: 14
0.81 0.11 0.09
Matches are distributed among these distances:
75 50 0.39
76 23 0.18
78 1 0.01
79 1 0.01
81 1 0.01
85 11 0.09
86 41 0.32
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.20
Consensus pattern (76 bp):
CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGAGAAGCATCAGCACCTCGGTGCCTACG
ATGTGCGAGAG
Found at i:10472105 original size:43 final size:43
Alignment explanation
Indices: 10472048--10472940 Score: 412
Period size: 43 Copynumber: 21.2 Consensus size: 43
10472038 ACAATCGGAC
*
10472048 ACCATC-GCAACTTGG-GCCGATGGATGTGCGGGACCATCGGGA
1 ACCATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGA
*** * * * *
10472090 GGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* ** *
10472132 CACCATCGGCAACTCAG-GCCGATGG-TGGTGCGGGACCGTCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
* ** *
10472176 AGCATCGGCACCTTGGTGCC-TAGGATGTGCAAGAGCATC-GGA
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* ** *
10472218 CACCATCGGCTAACTCAG-GCCGATGG-TGGTGCGCGACCATCGGGA
1 -ACCATCGGC-ACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
10472263 ACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGA
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
** * * * *
10472306 AGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATC-GAA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* **
10472348 CACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGAA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGG-A
* * * *
10472393 AGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGC
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* ** **
10472436 ACCATCGG-AAC-AAG-GCCGATGG-TGGTGCGGGACCATCGAAA
1 ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
** * * * **
10472477 AGTATCGGCACCCTGGTGCCTTCGATGTGCGGGGGCATC-GGA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
* ** * *
10472519 CACCATCGGCAACTAAG-GCCGATGG-TGGTACGAGACCATCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
*
10472563 AGCATCGGCACCTTGGTGCC-TCGGATGTGCGGGACCATCGGG-
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* * * ***
10472605 --TATCGGCA-----GTGCC--CGATGTGC--GAGCATCGAAC
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
10472637 ACCATCGGCA-----G-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
** * * *
10472675 AGTATCGGCACCATCGGTGCCTTCGATGTGCGGGACCATCGGGA
1 ACCATCGGCACC-TTGGTGCCATGGATGTGCGGGACCATCGGGA
* **
10472719 CACCATCGGCAACTAAG-GCCGAT-G-TGTGCGGGACCATC-GGA
1 -ACCATCGGCACCTTGGTGCC-ATGGATGTGCGGGACCATCGGGA
* * * *
10472760 AGCATCGGCACCTTGGTGCCTTCGAATGTGCGGGAGCATC-GGA
1 ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* *
10472803 CACCATCGGCACCTAGGTGCC-TCGGATGTGCGGGAGCATC-GGA
1 -ACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGACCATCGGGA
* *
10472846 CACCATCGGCAACTTTG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 -ACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGACCATCGGGA
* * * * * *
10472890 AGCATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGA
1 ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
*
10472932 CACCGTCGG
1 -ACCATCGG
10472941 GCCAAAAAAA
Statistics
Matches: 637, Mismatches: 142, Indels: 143
0.69 0.15 0.16
Matches are distributed among these distances:
31 7 0.01
33 10 0.02
34 8 0.01
35 6 0.01
36 5 0.01
38 15 0.02
40 24 0.04
41 27 0.04
42 53 0.08
43 332 0.52
44 128 0.20
45 22 0.03
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
ACCATCGGCACCTTGGTGCCATGGATGTGCGGGACCATCGGGA
Found at i:10472293 original size:130 final size:130
Alignment explanation
Indices: 10472159--10472931 Score: 431
Period size: 130 Copynumber: 6.1 Consensus size: 130
10472149 GCCGATGGTG
* * *
10472159 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
*
10472224 CGGCTAACTCAGGCCGATGGTGGTGCGCGACCATCGGG-AACCATCGGCACCTTGGTGCCTCGGA
66 CGGC-AACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGA
10472288 T
130 T
* * **
10472289 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
* *
10472354 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
* * * * * ** * * * ** * * **
10472419 GTGCGAGAGCATCGGGCACCATCGG-AAC-AAG-GCCGATGGTGGTGCGGGACCATCGAAAAGTA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGAT-GTGCAAGAGCATCGAACACCA
* * * * * ** * * **
10472481 TCGGCACCCT-GGTGCC-TTCGAT-GTGCGGGGGCATC-GGACACCATCGGCAACTAAG-GCCGA
65 TCGGCA-ACTAAG-GCCGAT-GGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCC--
10472541 T-GG-T
125 TCGGAT
* * ** * ***
10472545 GGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCT-CGGATGTGCGGGACCATCG---GGT
1 -GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAC-GATGTGCAAGAGCATCGAACACC
* * * * *
10472606 ATCGGC-AGT--GCCCGA---T-GT--GCGAGCATC--GAACACCATCGGCAGGCC--GATG-GT
64 ATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAA-ACCATCGGCA--CCTTGGTGCCT
10472657 --G--
126 CGGAT
* * * ** * *
10472658 GTGCGGGACCATCGGGAAGTATCGGCACCATCGGTGCCTTCGATGTGCGGGACCATCGGGACACC
1 GTGCGGGACCATCGGGAAGCATCGGCACC-TTGGTGCCTACGATGTGCAAGAGCATC-GAACACC
* *
10472723 ATCGGCAACTAAGGCCGAT-GT-GTGCGGGACCATC-GG-AAGCATCGGCACCTTGGTGCCTTCG
64 ATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCC-TCG
*
10472784 AAT
128 GAT
* * * ** *
10472787 GTGCGGGAGCATC-GGACACCATCGGCACCTAGGTGCCT-CGGATGTGCGGGAGCATCGGACACC
1 GTGCGGGACCATCGGGA-AGCATCGGCACCTTGGTGCCTAC-GATGTGCAAGAGCATCGAACACC
** * * * * * *
10472850 ATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGGACCTAGGTGCCTTGC
64 ATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCCTCGG
10472914 AT
129 AT
*
10472916 GTGCGGGAGCAT-GGGA
1 GTGCGGGACCATCGGGA
10472932 CACCGTCGGG
Statistics
Matches: 513, Mismatches: 85, Indels: 91
0.74 0.12 0.13
Matches are distributed among these distances:
112 26 0.05
113 24 0.05
114 3 0.01
115 1 0.00
116 2 0.00
117 23 0.04
118 3 0.01
119 4 0.01
120 5 0.01
121 2 0.00
122 5 0.01
123 13 0.03
124 9 0.02
125 2 0.00
126 12 0.02
127 68 0.13
128 68 0.13
129 109 0.21
130 134 0.26
ACGTcount: A:0.20, C:0.27, G:0.36, T:0.17
Consensus pattern (130 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGGCACCTTGGTGCCTCGGAT
Found at i:10472379 original size:86 final size:86
Alignment explanation
Indices: 10472289--10472603 Score: 467
Period size: 86 Copynumber: 3.7 Consensus size: 86
10472279 TGCCTCGGAT
* *
10472289 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGAACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGACACCA
10472353 TCGGCAACTAAGGCCGATGGTG
65 TCGGCAACTAAGGCCGATGGTG
* *
10472375 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCA
10472440 TCGG-AAC-AAGGCCGATGGTG
65 TCGGCAACTAAGGCCGATGGTG
** * * *
10472460 GTGCGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTC-GATGTGCGGGGGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCATCGGACACCA
10472524 TCGGCAACTAAGGCCGATGGTG
65 TCGGCAACTAAGGCCGATGGTG
* * *
10472546 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATCGG
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGG
10472604 GTATCGGCAG
Statistics
Matches: 204, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
84 44 0.22
85 34 0.17
86 81 0.40
87 45 0.22
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (86 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTG
Found at i:10472496 original size:171 final size:170
Alignment explanation
Indices: 10472289--10472604 Score: 542
Period size: 171 Copynumber: 1.9 Consensus size: 170
10472279 TGCCTCGGAT
** *
10472289 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
* *
10472354 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
*
10472419 GTGCGAGAGCATCGGGCACCATCGGAACAAGGCCGATGGTG
130 GTGCGAGACCATCGGGCACCATCGGAACAAGGCCGATGGTG
* *
10472460 GTGCGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
10472525 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
*
10472590 TGCGGGACCATCGGG
131 TGCGAGACCATCGGG
10472605 TATCGGCAGT
Statistics
Matches: 136, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
170 41 0.30
171 95 0.70
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (170 bp):
GTGCGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGACCATCGGGCACCATCGGAACAAGGCCGATGGTG
Found at i:10472789 original size:85 final size:87
Alignment explanation
Indices: 10472646--10472813 Score: 263
Period size: 85 Copynumber: 2.0 Consensus size: 87
10472636 CACCATCGGC
*
10472646 AGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCATCGGTGCCTTCGATGTGCGGGAC
1 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCATCGGTGCCTTCGATGTGCGGGAC
10472711 CATCGGGACACCATCGGCAACTA
66 CATC-GGACACCATCGGCAACTA
*
10472734 AGGCCGAT-GT-GTGCGGGACCATC-GGAAGCATCGGCACC-TTGGTGCCTTCGAATGTGCGGGA
1 AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCATCGGTGCCTTCG-ATGTGCGGGA
*
10472795 GCATCGGACACCATCGGCA
65 CCATCGGACACCATCGGCA
10472814 CCTAGGTGCC
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
84 25 0.33
85 28 0.37
86 13 0.17
87 2 0.03
88 8 0.11
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.17
Consensus pattern (87 bp):
AGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCATCGGTGCCTTCGATGTGCGGGAC
CATCGGACACCATCGGCAACTA
Found at i:10473638 original size:43 final size:43
Alignment explanation
Indices: 10473577--10474737 Score: 863
Period size: 43 Copynumber: 27.4 Consensus size: 43
10473567 TGTTCCAGAC
*
10473577 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10473620 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10473663 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10473706 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10473749 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10473792 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10473835 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10473878 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10473921 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10473964 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10474007 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10474050 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10474093 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10474136 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * * * *
10474179 ATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG-GT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10474215 -T-T-TGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10474255 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10474298 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10474341 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10474384 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10474419 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10474462 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10474505 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTG-CCTCGG
*
10474549 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10474592 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10474635 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10474678 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10474721 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10474738 GCTAAAAATA
Statistics
Matches: 904, Mismatches: 129, Indels: 170
0.75 0.11 0.14
Matches are distributed among these distances:
32 1 0.00
33 6 0.01
34 9 0.01
35 29 0.03
36 4 0.00
37 1 0.00
38 6 0.01
39 1 0.00
40 4 0.00
41 2 0.00
42 51 0.06
43 701 0.78
44 88 0.10
45 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10473723 original size:86 final size:86
Alignment explanation
Indices: 10473577--10474737 Score: 989
Period size: 86 Copynumber: 13.7 Consensus size: 86
10473567 TGTTCCAGAC
* * *
10473577 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10473641 CATCGTCACCTTGGTGCCTTGG
65 CATCGGCACCTTGGTGCCTTGG
* * * **
10473663 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10473728 ATCGGTACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTGCCTTGG
* * * *
10473749 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* **
10473814 TTCGGCACCTTAGGT-CGATGG
66 ATCGGCACCTT-GGTGCCTTGG
* ** * *
10473835 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
** *
10473897 -AGTATCGGCACCTTGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCCTTGG
* * ** * *
10473921 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* * *
10473983 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
* * * * ** *
10474007 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** * *
10474069 -AGTATCGGCACCATGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCCTTGG
* ** * *
10474093 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* * *
10474155 AGCATCGGCACCTCGGTGCCTTCG
63 ACCATCGGCACCTTGGTGCCTTGG
* * * * * * * * *
10474179 ATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG--GTGG-T-T-TGGGACCGTCGGGA-AG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATC-GGACAC
*
10474233 CATCGGCACCTTGGTGCCTAGG
65 CATCGGCACCTTGGTGCCTTGG
* * * * *
10474255 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10474317 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTTGG
* ** * * * * * *
10474341 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
10474405 CATCGGCA------T--CTTGG
65 CATCGGCACCTTGGTGCCTTGG
* *
10474419 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10474484 ATCGGCACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTGCCTTGG
* * *
10474505 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCTCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
* *
10474570 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCTTGG
* * *
10474592 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10474656 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTTGG
* *
10474678 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10474738 GCTAAAAATA
Statistics
Matches: 907, Mismatches: 127, Indels: 82
0.81 0.11 0.07
Matches are distributed among these distances:
76 50 0.06
77 10 0.01
78 64 0.07
79 5 0.01
80 2 0.00
82 1 0.00
83 5 0.01
84 1 0.00
85 23 0.03
86 647 0.71
87 99 0.11
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTTGG
Found at i:10473751 original size:129 final size:129
Alignment explanation
Indices: 10473577--10474737 Score: 1013
Period size: 129 Copynumber: 9.1 Consensus size: 129
10473567 TGTTCCAGAC
* *
10473577 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
* * * *
10473642 ATCGTCACCTTGGTGCCTTGGATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
* ** * *
10473706 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACAC
* * * * **
10473770 CATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATG
65 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCTTG
10473834 G
129 G
* ** *
10473835 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCGTCGGATGTGCGGGA-CCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TC-GGA
** * * * **
10473897 -AGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCG
62 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-
*
10473960 GTGG
126 TTGG
* * * * *
10473964 -TGGTGCGGGACCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGGATGTGCGAG-GCCATCGGGC
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCC-TCGGAC
* * ** * * ** *
10474026 ACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGC
63 ACCATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGC
*
10474088 CTTCG
125 CTTGG
* **
10474093 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGA-CCGTCGGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGGAT-GTGCGGGAGCC-TC-GG
* * * * * * *
10474154 A-AGCATCGGCACCTCGGTGCCTTCGATGTGCGGGAGCATCGG-CAACTTAGG--CC--GATG--
61 ACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC
*
10474211 GTGG
126 TTGG
* * * * * * *
10474215 -T-T-TGGGACCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACAC
* * * * * *
10474276 CATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTGCCT
65 CATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCT
*
10474338 CGG
127 TGG
* ** * * *
10474341 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTC-GATGTGCCGGTGCCTCGGACA
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACA
10474404 CCATCGGCA------T--CTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTG
64 CCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTG
10474461 G
129 G
* * *
10474462 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGGTTGTGCGGGAGCATCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCCTCGGACAC
* * * *
10474526 CATCGGCACCTTGGTGCCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCG
65 CATCGGCACCTTGGTG-CCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTG
10474591 G
129 G
* *
10474592 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
*
10474657 ATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
66 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
*
10474721 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGG
10474738 GCTAAAAATA
Statistics
Matches: 830, Mismatches: 141, Indels: 122
0.76 0.13 0.11
Matches are distributed among these distances:
118 8 0.01
119 56 0.07
120 22 0.03
121 94 0.11
122 6 0.01
124 6 0.01
126 4 0.00
127 2 0.00
128 25 0.03
129 464 0.56
130 142 0.17
131 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (129 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACC
ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
Found at i:10474240 original size:76 final size:76
Alignment explanation
Indices: 10474114--10474357 Score: 292
Period size: 76 Copynumber: 3.1 Consensus size: 76
10474104 CATCGGACAC
* *
10474114 CATCGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTCGGTGCCTTCG
1 CATCGGCAACTTAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTTCG
10474179 ATGTGCGGGAG
66 ATGTGCGGGAG
** **
10474190 CATCGGCAACTTAGGCCGATGGTGGTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGG
1 CATCGGCAACTTAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTTCG
10474255 ATGTGCGAGAGCATCGG
66 ATGTGCG-G-G-A---G
* * *
10474272 ACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTTGGTGCC
1 ----CATCGGCAACTTAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCC
*
10474337 -TCGGATGTGCGGGAC
62 TTC-GATGTGCGGGAG
10474352 CATCGG
1 CATCGG
10474358 GAAGTATCGG
Statistics
Matches: 143, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
76 72 0.50
77 1 0.01
78 1 0.01
79 1 0.01
82 1 0.01
83 1 0.01
84 1 0.01
85 1 0.01
86 64 0.45
ACGTcount: A:0.18, C:0.25, G:0.37, T:0.19
Consensus pattern (76 bp):
CATCGGCAACTTAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTTCG
ATGTGCGGGAG
Found at i:10474307 original size:162 final size:162
Alignment explanation
Indices: 10473880--10474357 Score: 679
Period size: 162 Copynumber: 2.9 Consensus size: 162
10473870 TGCGTCGGAT
10473880 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
* * *
10473945 CGGCAACTCAGGCCGGTGGTGGTGCGGGACCATCGGGAAGCATCGGCTCCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
*
10474010 TGCGAGGCCATCGGGCACCATCGGTAACTAAGGCCGATGGTG
131 TGCG-GG--A----G---CATCGGCAACTAAGGCCGATGGTG
* *
10474052 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
* *
10474117 CGGCAACTAAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTCGGTGCCTTC-GAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGAT
*
10474181 GTGCGGGAGCATCGGCAACTTAGGCCGATGGTG
130 GTGCGGGAGCATCGGCAACTAAGGCCGATGGTG
** * * **
10474214 GTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
* * *
10474279 CGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAATCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
*
10474344 TGCGGGACCATCGG
131 TGCGGGAGCATCGG
10474358 GAAGTATCGG
Statistics
Matches: 281, Mismatches: 23, Indels: 14
0.88 0.07 0.04
Matches are distributed among these distances:
161 2 0.01
162 149 0.53
165 1 0.00
169 1 0.00
171 2 0.01
172 124 0.44
173 2 0.01
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (162 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGGGAGCATCGGCAACTAAGGCCGATGGTG
Found at i:10474369 original size:248 final size:253
Alignment explanation
Indices: 10473880--10474357 Score: 702
Period size: 248 Copynumber: 1.9 Consensus size: 253
10473870 TGCGTCGGAT
* *
10473880 GTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTCGGTGCCTTCGATGTGCGAGAGCA-C-G--A-CAT
* * *
10473945 CGGCAACTCAGGCCGGTGGTGGTGCGGGACCATCGGGAAGCATCGGCTCCTTGGTGCCTCGGATG
61 CGGCAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAGGATG
*
10474010 TGCGAGGCCATCGGGCACCATCGGTAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATC
126 TGCGAGGCCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATC
*
10474075 GGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTG
191 GGCACCATGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATGGTG
*
10474138 GTGCGGGACCGTCGGGAAGCATCGGCACCTCGGTGCCTTCGATGTGCG-G-G-A-G-CATCGGCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTCGGTGCCTTCGATGTGCGAGAGCACGACATCGGCA
* ** *
10474198 ACTTAGGCCGATGGTGGTTTGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCGA
66 ACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCGA
*
10474263 GAG-CATCGGACACCATCGGTAACTTAGGCCGATGGTGGTGCGGGACCATCGGGAA-TCATCGGC
131 G-GCCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT-ATCGGC
*
10474326 ACCTTGGTGCC-TCGGATGTGCGGGACCATCGG
194 ACCATGGTGCCTTC-GATGTGCGGGACCATCGG
10474358 GAAGTATCGG
Statistics
Matches: 203, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
247 3 0.01
248 150 0.74
249 1 0.00
252 1 0.00
255 1 0.00
256 1 0.00
257 1 0.00
258 45 0.22
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.19
Consensus pattern (253 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTCGGTGCCTTCGATGTGCGAGAGCACGACATCGGCA
ACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCGA
GGCCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCAC
CATGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATGGTG
Found at i:10474423 original size:35 final size:35
Alignment explanation
Indices: 10474378--10474453 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10474368 CACCATGGTG
* * *
10474378 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10474413 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10474448 CCTTGG
1 CCTTGG
10474454 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10474641 original size:173 final size:172
Alignment explanation
Indices: 10474417--10474737 Score: 545
Period size: 173 Copynumber: 1.9 Consensus size: 172
10474407 TCGGCATCTT
* * *
10474417 GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACA
1 GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCATCGGACA
*
10474482 CCATCGGCACCTTGGTGCC-CTGGTTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCCT
66 CCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTG-CCT
10474546 CGGATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTC
129 CGGATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTC
* *
10474590 GGATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACA
1 GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCATCGGACA
*
10474655 CCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTG
66 CCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCG
*
10474720 GATGTGCGGGAGCGTCGG
131 GATGTGCGGGAGCCTCGG
10474738 GCTAAAAATA
Statistics
Matches: 139, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
172 21 0.15
173 117 0.84
174 1 0.01
ACGTcount: A:0.14, C:0.30, G:0.36, T:0.20
Consensus pattern (172 bp):
GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGCATGTGCGGGAGCATCGGACA
CCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCG
GATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTC
Found at i:10487894 original size:3 final size:3
Alignment explanation
Indices: 10487886--10487922 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10487876 ACTCTGAAAA
10487886 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10487923 AATTTGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Done.