Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 53 of 144
Found at i:10487995 original size:3 final size:3
Alignment explanation
Indices: 10487989--10488023 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10487979 ATAATAATAA
* *
10487989 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10488024 GTAACTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10488009 original size:15 final size:15
Alignment explanation
Indices: 10487989--10488023 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10487979 ATAATAATAA
10487989 TATTATTATTATTAC
1 TATTATTATTATTAC
10488004 TATTATTATTATTAC
1 TATTATTATTATTAC
10488019 TATTA
1 TATTA
10488024 GTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10488309 original size:43 final size:43
Alignment explanation
Indices: 10488187--10489084 Score: 431
Period size: 43 Copynumber: 20.9 Consensus size: 43
10488177 GAGCTCCGTC
* * * * *
10488187 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTT
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* ***
10488230 GG-GCCGATGGATGTGCGGGACCATCAGGA-GGTATCGGCACCTT
1 GGTGCC-ATCGATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * * *
10488273 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTC
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10488316 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* ** *
10488359 GGTGCC-TAGGATGTGCAAGAGCATCGGACACCATCGGCTA-CTT
1 GGTGCCAT-CGATGTGCGGGACCATCGGACACCATCGGC-ACCTT
* * * *
10488402 AG-GCCGAT-GGTGGTGCGCGACCATCGGGA-ACCATCGACACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
** *
10488445 GGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCTGCACCTT
1 GGTGCCATC-GATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * *
10488488 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10488531 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10488575 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * ** *
10488618 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-ATCGAT-GTGCGGGACCATCGGACACCATCGGCACCTT
* ** * *
10488661 GGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10488704 AG-GCCGAT-GGTGGTACGAGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10488747 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * ** *
10488790 AG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCCT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * *
10488833 GGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * *
10488876 AG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* *
10488919 GGTGCC-TCGAATGTGCGGGAGCATCGGACACCATCGGCACCTA
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGGCACCTT
* *
10488962 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTT
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10489005 TG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTA
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * *
10489048 GGTGCC-TTGCATGTGCGGGAGCATGGGACACCGTCGG
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGG
10489085 GCCAAAAAAA
Statistics
Matches: 635, Mismatches: 157, Indels: 126
0.69 0.17 0.14
Matches are distributed among these distances:
42 67 0.11
43 475 0.75
44 88 0.14
45 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
Found at i:10488814 original size:172 final size:172
Alignment explanation
Indices: 10488457--10488957 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10488447 TGCCTCGGAT
* * *
10488457 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10488522 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
10488587 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
** *
10488630 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10488695 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
10488760 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
131 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10488802 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10488867 CGGCAACTAAGGCCGATAGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
* *
10488932 TGCGGGAGCATCGGACACCATCGGCA
131 TGCGAGAGCATCGGGCACCATCGGCA
10488958 CCTAGGTGCC
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 215 0.70
173 94 0.30
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10488981 original size:86 final size:85
Alignment explanation
Indices: 10488457--10488957 Score: 720
Period size: 86 Copynumber: 5.8 Consensus size: 85
10488447 TGCCTCGGAT
* * *
10488457 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10488522 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* *
10488543 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
*
10488607 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACTAAGGCC-ATGGTG
** * * *
10488630 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10488695 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* * * *
10488716 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
*
10488780 TCGGCAACAAAGGCCGATGGTG
65 TCGGCAACTAAGGCC-ATGGTG
* * *
10488802 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10488867 CGGCAACTAAGGCCGATAGTG
66 CGGCAACTAAGGCC-ATGGTG
10488888 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGAATGTGCGGGAGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCA
10488952 TCGGCA
65 TCGGCA
10488958 CCTAGGTGCC
Statistics
Matches: 373, Mismatches: 36, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
85 5 0.01
86 289 0.77
87 79 0.21
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (85 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCATGGTG
Found at i:10489031 original size:172 final size:172
Alignment explanation
Indices: 10488414--10488989 Score: 747
Period size: 172 Copynumber: 3.3 Consensus size: 172
10488404 GCCGATGGTG
* * * *
10488414 GTGCGCGACCATCGGGA-ACCATCGACACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGT
1 GTGCGAGAGCATC-GGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATC-GGAAGT
* * * *
10488477 ATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGT
64 ATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGT
* *
10488542 GGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
129 GGTGCGAGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGAAT
* * * * *
10488587 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGAAAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATCG-GAAG
* ** *
10488649 TATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTAAGGCCGATGG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
* *
10488714 TGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* * * *
10488759 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATC-GGAAG
*
10488821 TATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
*
10488886 TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* *
10488931 GTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TCGGATGTGCGGGAGCATCGGA
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGA
10488990 CACCATCGGC
Statistics
Matches: 365, Mismatches: 29, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
171 4 0.01
172 238 0.65
173 122 0.33
174 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGAAGTAT
CGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
TGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
Found at i:10489782 original size:43 final size:43
Alignment explanation
Indices: 10489721--10490889 Score: 921
Period size: 43 Copynumber: 27.4 Consensus size: 43
10489711 TGTTCCAGAC
*
10489721 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10489764 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10489806 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10489849 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10489892 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10489935 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10489978 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10490021 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10490064 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10490107 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10490150 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10490193 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10490236 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10490279 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10490322 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
** * *
10490365 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10490408 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10490451 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10490494 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10490537 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10490572 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10490615 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10490658 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10490701 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10490744 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10490787 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10490830 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10490873 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10490890 GCTAAAAATA
Statistics
Matches: 917, Mismatches: 130, Indels: 158
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 3 0.00
42 85 0.09
43 744 0.81
44 55 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10489929 original size:86 final size:85
Alignment explanation
Indices: 10489721--10490889 Score: 1025
Period size: 86 Copynumber: 13.7 Consensus size: 85
10489711 TGTTCCAGAC
* * *
10489721 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10489785 CATCGTCACCTTGGTGCCTGG
65 CATCGGCACCTTGGTGCCTGG
* * * **
10489806 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10489871 ATCGGTACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTG-CCTGG
* * * *
10489892 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10489957 TTCGGCACCTTAGGT-CGATGG
66 ATCGGCACCTT-GGTGC-CTGG
* ** * *
10489978 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
** *
10490040 -AGTATCGGCACCTTGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCC-TGG
* * ** * *
10490064 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10490126 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCT-GG
* * * * ** *
10490150 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** * *
10490212 -AGTATCGGCACCATGGTGCCTTCG
62 CACCATCGGCACCTTGGTGCC-TGG
* ** * *
10490236 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* * *
10490298 AGCATCGGCACCTCGGTGCCTTCG
63 ACCATCGGCACCTTGGTGCC-TGG
* * * ** * *
10490322 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10490384 AGCATCGGCACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCT-GG
* * * * *
10490408 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10490470 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCT-GG
* ** * * * * * *
10490494 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
*
10490558 CATCGGCA------T-CTTGG
65 CATCGGCACCTTGGTGCCTGG
* *
10490572 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
10490637 ATCGGCACCTTGGTGCCCTGG
66 ATCGGCACCTTGGTG-CCTGG
* *
10490658 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10490722 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCT-GG
* * *
10490744 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
10490808 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCT-GG
* *
10490830 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10490890 GCTAAAAATA
Statistics
Matches: 938, Mismatches: 110, Indels: 71
0.84 0.10 0.06
Matches are distributed among these distances:
77 3 0.00
78 62 0.07
79 2 0.00
80 1 0.00
84 1 0.00
85 90 0.10
86 757 0.81
87 22 0.02
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (85 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTGG
Found at i:10490576 original size:35 final size:35
Alignment explanation
Indices: 10490531--10490606 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10490521 CACCATGGTG
* * *
10490531 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10490566 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10490601 CCTTGG
1 CCTTGG
10490607 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10498402 original size:3 final size:3
Alignment explanation
Indices: 10498394--10498430 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10498384 TCTAAGCAAA
10498394 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10498431 AATTTGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10498503 original size:3 final size:3
Alignment explanation
Indices: 10498497--10498531 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10498487 ATAATAATAA
* *
10498497 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10498532 GTAACTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10498517 original size:15 final size:15
Alignment explanation
Indices: 10498497--10498531 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10498487 ATAATAATAA
10498497 TATTATTATTATTAC
1 TATTATTATTATTAC
10498512 TATTATTATTATTAC
1 TATTATTATTATTAC
10498527 TATTA
1 TATTA
10498532 GTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10498817 original size:43 final size:43
Alignment explanation
Indices: 10498695--10499592 Score: 431
Period size: 43 Copynumber: 20.9 Consensus size: 43
10498685 GAGCTCCGTC
* * * * *
10498695 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTT
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* ***
10498738 GG-GCCGATGGATGTGCGGGACCATCAGGA-GGTATCGGCACCTT
1 GGTGCC-ATCGATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * * *
10498781 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTC
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10498824 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* ** *
10498867 GGTGCC-TAGGATGTGCAAGAGCATCGGACACCATCGGCTA-CTT
1 GGTGCCAT-CGATGTGCGGGACCATCGGACACCATCGGC-ACCTT
* * * *
10498910 AG-GCCGAT-GGTGGTGCGCGACCATCGGGA-ACCATCGACACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
** *
10498953 GGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCTGCACCTT
1 GGTGCCATC-GATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * *
10498996 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10499039 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10499083 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * ** *
10499126 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-ATCGAT-GTGCGGGACCATCGGACACCATCGGCACCTT
* ** * *
10499169 GGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10499212 AG-GCCGAT-GGTGGTACGAGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10499255 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * ** *
10499298 AG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCCT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * *
10499341 GGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * *
10499384 AG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* *
10499427 GGTGCC-TCGAATGTGCGGGAGCATCGGACACCATCGGCACCTA
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGGCACCTT
* *
10499470 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTT
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10499513 TG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTA
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * *
10499556 GGTGCC-TTGCATGTGCGGGAGCATGGGACACCGTCGG
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGG
10499593 GCCAAAAAAA
Statistics
Matches: 635, Mismatches: 157, Indels: 126
0.69 0.17 0.14
Matches are distributed among these distances:
42 67 0.11
43 475 0.75
44 88 0.14
45 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
Found at i:10499322 original size:172 final size:172
Alignment explanation
Indices: 10498965--10499465 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10498955 TGCCTCGGAT
* * *
10498965 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10499030 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
10499095 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
** *
10499138 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10499203 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
10499268 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
131 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10499310 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10499375 CGGCAACTAAGGCCGATAGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
* *
10499440 TGCGGGAGCATCGGACACCATCGGCA
131 TGCGAGAGCATCGGGCACCATCGGCA
10499466 CCTAGGTGCC
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 215 0.70
173 94 0.30
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10499489 original size:86 final size:85
Alignment explanation
Indices: 10498965--10499465 Score: 720
Period size: 86 Copynumber: 5.8 Consensus size: 85
10498955 TGCCTCGGAT
* * *
10498965 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10499030 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* *
10499051 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
*
10499115 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACTAAGGCC-ATGGTG
** * * *
10499138 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10499203 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* * * *
10499224 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
*
10499288 TCGGCAACAAAGGCCGATGGTG
65 TCGGCAACTAAGGCC-ATGGTG
* * *
10499310 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10499375 CGGCAACTAAGGCCGATAGTG
66 CGGCAACTAAGGCC-ATGGTG
10499396 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGAATGTGCGGGAGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCA
10499460 TCGGCA
65 TCGGCA
10499466 CCTAGGTGCC
Statistics
Matches: 373, Mismatches: 36, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
85 5 0.01
86 289 0.77
87 79 0.21
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (85 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCATGGTG
Found at i:10499539 original size:172 final size:172
Alignment explanation
Indices: 10498922--10499497 Score: 747
Period size: 172 Copynumber: 3.3 Consensus size: 172
10498912 GCCGATGGTG
* * * *
10498922 GTGCGCGACCATCGGGA-ACCATCGACACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGT
1 GTGCGAGAGCATC-GGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATC-GGAAGT
* * * *
10498985 ATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGT
64 ATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGT
* *
10499050 GGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
129 GGTGCGAGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGAAT
* * * * *
10499095 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGAAAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATCG-GAAG
* ** *
10499157 TATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTAAGGCCGATGG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
* *
10499222 TGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* * * *
10499267 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATC-GGAAG
*
10499329 TATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
*
10499394 TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* *
10499439 GTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TCGGATGTGCGGGAGCATCGGA
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGA
10499498 CACCATCGGC
Statistics
Matches: 365, Mismatches: 29, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
171 4 0.01
172 238 0.65
173 122 0.33
174 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGAAGTAT
CGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
TGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
Found at i:10500290 original size:43 final size:43
Alignment explanation
Indices: 10500229--10501398 Score: 930
Period size: 43 Copynumber: 27.4 Consensus size: 43
10500219 TGTTCCAGAC
*
10500229 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10500272 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10500315 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10500358 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10500401 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10500444 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10500487 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10500530 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10500573 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10500616 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10500659 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10500702 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10500745 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10500788 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10500831 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
** * *
10500874 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10500917 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10500960 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10501003 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10501046 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10501081 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10501124 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10501167 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10501210 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10501253 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10501296 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10501339 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10501382 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10501399 GCTAAAAATA
Statistics
Matches: 918, Mismatches: 130, Indels: 158
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 1 0.00
42 51 0.06
43 780 0.85
44 56 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10500375 original size:86 final size:86
Alignment explanation
Indices: 10500229--10501398 Score: 1041
Period size: 86 Copynumber: 13.7 Consensus size: 86
10500219 TGTTCCAGAC
* * *
10500229 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10500293 CATCGTCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * * **
10500315 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10500380 ATCGGTACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* * * *
10500401 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10500466 TTCGGCACCTTAGGT-CGAT-GG
66 ATCGGCACCTT-GGTGC-CTCGG
* ** * *
10500487 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
**
10500549 -AGTATCGGCACCTTGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* * ** * *
10500573 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10500635 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * ** *
10500659 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** *
10500721 -AGTATCGGCACCATGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10500745 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10500807 AGCATCGGCACCTCGGTGCCTTC-G
63 ACCATCGGCACCTTGGTGCC-TCGG
* * * ** * *
10500831 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10500893 AGCATCGGCACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * *
10500917 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10500979 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* ** * * * * * *
10501003 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
*
10501067 CATCGGCA------T--CTTGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10501081 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
10501146 ATCGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* *
10501167 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10501231 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * *
10501253 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
10501317 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10501339 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10501399 GCTAAAAATA
Statistics
Matches: 938, Mismatches: 107, Indels: 78
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.00
78 64 0.07
80 1 0.00
84 1 0.00
85 21 0.02
86 823 0.88
87 25 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTCGG
Found at i:10501085 original size:35 final size:35
Alignment explanation
Indices: 10501040--10501115 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10501030 CACCATGGTG
* * *
10501040 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10501075 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10501110 CCTTGG
1 CCTTGG
10501116 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10507642 original size:43 final size:43
Alignment explanation
Indices: 10507583--10507834 Score: 160
Period size: 43 Copynumber: 5.8 Consensus size: 43
10507573 GCACATTCGA
*
10507583 GGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATC
1 GGCACCAAGGTACCGATGCTT-CCGATGGTCCCGCACCACCATC
** * * * *
10507627 GGC-CTGAGTTACCGATGGTGTCCGATGCTCCCGCA-CATCGAAT-
1 GGCACCAAGGTACCGATGCT-TCCGATGGTCCCGCACCA-C-CATC
* * *
10507670 GGCCACCAAGGTGCCGATACTTCCCGATTGGTCCCGCACCA--TTC
1 GG-CACCAAGGTACCGATGCTT-CCGA-TGGTCCCGCACCACCATC
10507714 GAGGCACCAAGGTACCGATGCTTCCGATGGTCCCGCACCACCATC
1 --GGCACCAAGGTACCGATGCTTCCGATGGTCCCGCACCACCATC
** * * * * *
10507759 GGC-CTGAGTTACCGATGGTGTCCGATGCTCCCGCA-CATCGA-A
1 GGCACCAAGGTACCGATGCT-TCCGATGGTCCCGCACCA-CCATC
* * *
10507801 GGCACCAAGGTGCCGATACTTCCCGACGGTCCCG
1 GGCACCAAGGTACCGATGCTT-CCGATGGTCCCG
10507835 ATATCCGAGG
Statistics
Matches: 158, Mismatches: 33, Indels: 35
0.70 0.15 0.15
Matches are distributed among these distances:
42 20 0.13
43 80 0.51
44 12 0.08
45 33 0.21
46 11 0.07
47 2 0.01
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (43 bp):
GGCACCAAGGTACCGATGCTTCCGATGGTCCCGCACCACCATC
Found at i:10507748 original size:89 final size:85
Alignment explanation
Indices: 10507566--10507751 Score: 216
Period size: 89 Copynumber: 2.1 Consensus size: 85
10507556 NNNNNNNNNN
*
10507566 TGGTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCCCGCACCACCATCGGCC
1 TGGTCCCGCACATTCGAGGCACCAAGGTGCCGATACTTCCCGATGGTCCCGCACCACCA-CGGCC
** * *
10507631 TGAGTTACCGATGGTGTCCGA
65 CAAGGTACCGATGCTGTCCGA
* *
10507652 TGCTCCCGCACA-TCGAATGGCCACCAAGGTGCCGATACTTCCCGATTGGTCCCGCACCATTCGA
1 TGGTCCCGCACATTCG-A-GG-CACCAAGGTGCCGATACTTCCCGA-TGGTCCCGCACCA--CCA
10507716 -GGCACCAAGGTACCGATGCT-TCCGA
60 CGGC-CCAAGGTACCGATGCTGTCCGA
10507741 TGGTCCCGCAC
1 TGGTCCCGCAC
10507752 CACCATCGGC
Statistics
Matches: 85, Mismatches: 8, Indels: 11
0.82 0.08 0.11
Matches are distributed among these distances:
85 3 0.04
86 12 0.14
87 2 0.02
88 23 0.27
89 31 0.36
90 12 0.14
91 2 0.02
ACGTcount: A:0.19, C:0.36, G:0.26, T:0.19
Consensus pattern (85 bp):
TGGTCCCGCACATTCGAGGCACCAAGGTGCCGATACTTCCCGATGGTCCCGCACCACCACGGCCC
AAGGTACCGATGCTGTCCGA
Found at i:10515257 original size:43 final size:43
Alignment explanation
Indices: 10515148--10515445 Score: 466
Period size: 43 Copynumber: 7.0 Consensus size: 43
10515138 GCTACCATGT
*
10515148 CGAGGCACCAAGGTGCCGATGGTGTCCGAGGCTCCCGCACAT-
1 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
* *
10515190 CGAGG--GCAAGGTGCCGATGGTGTCCGAGGCTCCCGCACATC
1 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
10515231 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATGC
1 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACAT-C
*
10515275 CGAGGGCACCAAGGTGCCGATGGGGTCCGATGC-CCCGCACATC
1 CGA-GGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
10515318 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCA-A-C
1 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
*
10515359 C-AGGGCACCAAGGTGCCGATGGTGTCCGATGCCCCCGCACATC
1 CGA-GGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
*
10515402 CAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
1 CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
10515445 C
1 C
10515446 AAGATGATGG
Statistics
Matches: 239, Mismatches: 7, Indels: 19
0.90 0.03 0.07
Matches are distributed among these distances:
40 35 0.15
41 42 0.18
42 35 0.15
43 85 0.36
44 14 0.06
45 28 0.12
ACGTcount: A:0.19, C:0.35, G:0.32, T:0.14
Consensus pattern (43 bp):
CGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATC
Found at i:10515375 original size:128 final size:128
Alignment explanation
Indices: 10515143--10515445 Score: 465
Period size: 128 Copynumber: 2.4 Consensus size: 128
10515133 CCCAGGCTAC
* * *
10515143 CATGTCGAGGCACCAAGGTGCCGATGGTGTCCGAGGCTCCCGCACAT-CGAGGGCAAGGTGCCGA
1 CATGCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCCAAGGTGCCGA
*
10515207 TGGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCA
66 TGGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCCCCCGCA
*
10515270 CATGCCGAGGGCACCAAGGTGCCGATGGGGTCCGATGC-CCCGCACATCCGAGGCACCAAGGTGC
1 CATGCCGA-GGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGG--CCAAGGTGC
*
10515334 CGATGGTGTCCGATGCTCCCGCA-A-CC-AGGGCACCAAGGTGCCGATGGTGTCCGATGCCCCCG
63 CGATGGTGTCCGAGGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGTCCGATGCCCCCG
10515396 CA
127 CA
*
10515398 CAT-CCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
1 CATGCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
10515446 AAGATGATGG
Statistics
Matches: 162, Mismatches: 8, Indels: 12
0.89 0.04 0.07
Matches are distributed among these distances:
126 28 0.17
127 31 0.19
128 72 0.44
129 1 0.01
130 30 0.19
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (128 bp):
CATGCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCCAAGGTGCCGA
TGGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCCCCCGCA
Found at i:10515459 original size:75 final size:79
Alignment explanation
Indices: 10515292--10515491 Score: 239
Period size: 84 Copynumber: 2.5 Consensus size: 79
10515282 ACCAAGGTGC
* *
10515292 CGATGGGGTCCGATG-CCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGC
1 CGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGC
*
10515356 AACCAGGGCACCAAGGT
66 AACCA--G-ACCAAGAT
10515373 GCCGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCC
1 --CGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCC
*
10515438 GC-A-CA-TCCAAGAT
64 GCAACCAGACCAAGAT
* * * * *
10515451 -GATGGTGTCCGAGGCACCGGCACATCGAAGGCACCATGGTG
1 CGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTG
10515492 ATACTTCCCA
Statistics
Matches: 107, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
75 36 0.34
78 6 0.06
82 2 0.02
83 15 0.14
84 48 0.45
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.15
Consensus pattern (79 bp):
CGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGC
AACCAGACCAAGAT
Found at i:10515732 original size:81 final size:81
Alignment explanation
Indices: 10515539--10515857 Score: 330
Period size: 83 Copynumber: 4.0 Consensus size: 81
10515529 TCCCGATGGT
* ** *
10515539 CCCGCACCACCATCGGCC--A--T-CCGATGGTGTCCGATGCTCTCGCACA-CCTAGGCA-AAGG
1 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAGG
10515597 TGCCGATGCTTCCCGA
66 TGCCGATGCTTCCCGA
* * *
10515613 CGGTCC-CAAACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCCCGCACATCGAAGGCA
1 C---CCGC--ACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCA
10515677 CCAGGTGCCGATGCTTCCCGA
61 CCAGGTGCCGATGCTTCCCGA
10515698 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCATG
1 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCA-G
10515763 GTGCC---GCTTCCCGA
65 GTGCCGATGCTTCCCGA
* *
10515777 TGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGGC-CTCGCACATCCG-AGGC
1 ----CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGAT-GCTCCCGCACAT-CGAAGGC
10515840 A--A-G-GCCGATGCTTCCCGA
60 ACCAGGTGCCGATGCTTCCCGA
10515858 TTCCCGGCCT
Statistics
Matches: 212, Mismatches: 10, Indels: 39
0.81 0.04 0.15
Matches are distributed among these distances:
74 1 0.00
76 1 0.00
77 2 0.01
78 16 0.08
79 10 0.05
80 1 0.00
81 65 0.31
82 9 0.04
83 77 0.36
84 10 0.05
85 20 0.09
ACGTcount: A:0.18, C:0.38, G:0.25, T:0.18
Consensus pattern (81 bp):
CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAGG
TGCCGATGCTTCCCGA
Found at i:10515822 original size:43 final size:43
Alignment explanation
Indices: 10515698--10515830 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 43
10515688 TGCTTCCCGA
* *
10515698 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCT
1 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGGT
* * * * * *
10515741 CCCGCA-CATCGA-AGGCAC-CATGGTGCCGCT--T-CCCGATGGT
1 CCCGCACCA-CCATCGGC-CTTA-GTTACCGATGGTGCCCGATGGT
10515781 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGG-
1 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGGT
10515823 CCTCGCAC
1 CC-CGCAC
10515831 ATCCGAGGCA
Statistics
Matches: 66, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
40 22 0.33
41 7 0.11
42 9 0.14
43 28 0.42
ACGTcount: A:0.17, C:0.39, G:0.25, T:0.20
Consensus pattern (43 bp):
CCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGGT
Found at i:10515832 original size:164 final size:153
Alignment explanation
Indices: 10515539--10515857 Score: 365
Period size: 164 Copynumber: 2.0 Consensus size: 153
10515529 TCCCGATGGT
* *
10515539 CCCGCACCACCATCGGCCATCCGATGGTGTCCGATGCTCTCGCACACCTAGGCAAAGGTGCCGAT
1 CCCGCACCACCATCGGCCATCCGATGGTGTCCGATGCTCCCGCACACCAAGGCAAAGGTGCC-A-
* * *
10515604 GCTTCCCGACGGTCCCAAACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCCCGCACAT
64 GCTTCCCGACGGTCCCAAACCACCATCGGCCTAAGTTACCGATGGTGCCCGATGCTCCCGCACAT
10515669 -CGAAGGCACCAGGTGCCGATGCTTCCCGA
129 CCG-AGGCA--A-G-GCCGATGCTTCCCGA
* *
10515698 CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCATG
1 CCCGCACCACCATCGGCC--A--T-CCGATGGTGTCCGATGCTCCCGCACA-CCAAGGCA--AAG
* ** * *
10515763 GTGCC-GCTTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATGGC-CT
58 GTGCCAGCTTCCCGACGGTCCCAAACCACCATCGGCCTAAGTTACCGATGGTGCCCGAT-GCTCC
10515826 CGCACATCCGAGGCAAGGCCGATGCTTCCCGA
122 CGCACATCCGAGGCAAGGCCGATGCTTCCCGA
10515858 TTCCCGGCCT
Statistics
Matches: 138, Mismatches: 12, Indels: 19
0.82 0.07 0.11
Matches are distributed among these distances:
159 18 0.13
160 15 0.11
161 2 0.01
162 1 0.01
163 1 0.01
164 84 0.61
165 10 0.07
167 7 0.05
ACGTcount: A:0.18, C:0.38, G:0.25, T:0.18
Consensus pattern (153 bp):
CCCGCACCACCATCGGCCATCCGATGGTGTCCGATGCTCCCGCACACCAAGGCAAAGGTGCCAGC
TTCCCGACGGTCCCAAACCACCATCGGCCTAAGTTACCGATGGTGCCCGATGCTCCCGCACATCC
GAGGCAAGGCCGATGCTTCCCGA
Found at i:10515840 original size:83 final size:83
Alignment explanation
Indices: 10515528--10515821 Score: 360
Period size: 83 Copynumber: 3.6 Consensus size: 83
10515518 GTGGTGATGA
* *
10515528 TTCCCGATGGTCCCGCACCACCATCGGCC--A--T-CCGATGGTGTCCGATGCTCTCGCACA-CC
1 TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCG
* *
10515587 TAGGCA-AAGGTGCCGATGC
66 AAGGCACCAGGTGCC-A-GC
* ** * * *
10515606 TTCCCGACGGTCCCAAACCACCATCGGCCTAAGTTGCCGATGGTGTCTGATGCTCCCGCACATCG
1 TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCG
10515671 AAGGCACCAGGTGCCGATGC
66 AAGGCACCAGGTGCC-A-GC
10515691 TTCCCGA----CCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCG
1 TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCG
10515752 AAGGCACCATGGTGCC-GC
66 AAGGCACCA-GGTGCCAGC
*
10515770 TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGCCCGATG
1 TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATG
10515822 GCCTCGCACA
Statistics
Matches: 190, Mismatches: 14, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
78 26 0.14
79 9 0.05
80 1 0.01
81 58 0.31
82 7 0.04
83 64 0.34
84 6 0.03
85 19 0.10
ACGTcount: A:0.18, C:0.37, G:0.25, T:0.20
Consensus pattern (83 bp):
TTCCCGATGGTCCCGCACCACCATCGGCCTTAGTTACCGATGGTGTCCGATGCTCCCGCACATCG
AAGGCACCAGGTGCCAGC
Found at i:10516782 original size:43 final size:43
Alignment explanation
Indices: 10516717--10517614 Score: 452
Period size: 43 Copynumber: 20.9 Consensus size: 43
10516707 TTTTTTTGGC
* * * *
10516717 CCGACGGTGTCCC-ATGCTCCCGCACATGCAAGGCACCTAGGTC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * ** *
10516760 CCGATGCTTCCCGATGGTCCCGCACCA-CCATCGGC-CAAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* *
10516803 CCGATGGTGT-CCGATGCTCCCGCACATCCGAGGCACCTAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10516846 CCGATGGTGT-CCGATGCTCCCGCACATTCGAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * *
10516889 CCGATGCTTCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
*
10516932 CCGATGGTGT-CCGATGGTCCCGCACATCGAAGGCACC-AGGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** * * * *
10516975 CCGATACTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10517018 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * * *
10517061 CCGATGCTTCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
** *
10517104 CCGATGGTGT-CCGATGCCCCCGCACATCGAAGGCACC-ATGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** ** * * * *
10517147 CCGATACTTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10517190 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10517233 CCGATGCTTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTG
1 CCGATG-GTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * *
10517277 CCGATGGTGT-TCGATGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* ** * *
10517320 CAGATACTTCCCGATGGTCCCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10517363 TCGATGGTTCCCGATGGTCGCGCACCA-CCATCGG--CCTAAGTAG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGT-G
* ** * *
10517406 CCGATGGTGT-CCGATGCTCTTGCACATCCTAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10517449 CCGATGCTTCCCGACGGTCCCGCACCA-CCATCGG--CCTGAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCT-AGGTG
* * * * *
10517492 CCGATGGTGT-TCGACGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
*** * * * *
10517535 CCGATACCTCCTGATGGTCCCGCACATCCATCGGC-CCAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCA-AGGCACCTAGGTG
* * *
10517578 CCGATGGTGT-CCGATGATCCAGCACATCCAGGGCACC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACC
10517615 GACGGAGCTC
Statistics
Matches: 633, Mismatches: 165, Indels: 114
0.69 0.18 0.12
Matches are distributed among these distances:
42 60 0.09
43 491 0.78
44 77 0.12
45 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (43 bp):
CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
Found at i:10516867 original size:86 final size:86
Alignment explanation
Indices: 10516724--10517614 Score: 532
Period size: 86 Copynumber: 10.3 Consensus size: 86
10516714 GGCCCGACGG
* * * * * * *
10516724 TGTCCCATGCTCCCGCACATGCAAGGCACCTAGGTCCCGATGCT-TCCCGATGGTCCCGCACCA-
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CAT
* * *
10516787 CCATCGGC-CAAAGTTGCCGATGG
64 CCA-CGGCACCAAGGTGCCGATGC
*
10516810 TGTCCGATGCTCCCGCACATCCGA-GGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATT
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA-T
*
10516874 CGA-GGCACCAAGGTGCCGATGC
64 CCACGGCACCAAGGTGCCGATGC
* * * *
10516896 T-TCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTGCCGATGGTGTCCGATGGTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10516958 TCGAAGGCACCAGGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * *
10516982 T-TCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
10517044 TCCGA-GGCACCAAGGTGCCGATGC
63 TCC-ACGGCACCAAGGTGCCGATGC
* * * * *
10517068 T-TCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTGCCGATGGTGTCCGATGCCCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10517130 TCGAAGGCACCATGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * * * *
10517154 TTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACAT
1 TGTCCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
10517217 CCGA-GGCACCAAGGTGCCGATGC
64 CC-ACGGCACCAAGGTGCCGATGC
* * * *
10517240 TTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTGCCGATGGTGTTCGATGCTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10517303 TCGAAGGCACCAAGGTGCAGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * *
10517327 T-TCCCGATGGTCCCGCACATCCGA-GGCACCAAGGTGTCGATGGT-TCCCGATGGTCGCGCACC
1 TGT-CCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-C
* *
10517389 A-CCATCGGC-CTAA-GTAGCCGATGG
62 ATCCA-CGGCACCAAGGT-GCCGATGC
* ** * * * *
10517413 TGTCCGATGCTCTTGCACATCCTA-GGCACCAAGGTGCCGATGCT-TCCCGACGGTCCCGCACCA
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CA
** * *
10517476 -CCATCGGC-CTGAGTTGCCGATGG
63 TCCA-CGGCACCAAGGTGCCGATGC
* * * * * * *** *
10517499 TGTTCGACGCTCCCGCACATCGAAGGCACCAAGGTGCCGAT-ACCTCCTGATGGTCCCGCACATC
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCC-GATGCTCCCGCACATC
* *
10517563 CATCGGC-CCAAGTTGCCGATGG
65 CA-CGGCACCAAGGTGCCGATGC
* * *
10517585 TGTCCGATGATCCAGCACATCCAGGGCACC
1 TGTCCGATGGTCCCGCACATCCACGGCACC
10517615 GACGGAGCTC
Statistics
Matches: 686, Mismatches: 90, Indels: 58
0.82 0.11 0.07
Matches are distributed among these distances:
85 25 0.04
86 567 0.83
87 94 0.14
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (86 bp):
TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
ACGGCACCAAGGTGCCGATGC
Found at i:10517024 original size:172 final size:172
Alignment explanation
Indices: 10516844--10517344 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10516834 GGCACCTAGG
* * *
10516844 TGCCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10516909 CGCACCACTATCGGCCTTAGTTGCCGATGGTGTCCGATGGTCCCGCACATCGAAGGCACCAGGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
10516974 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
*
10517016 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCT
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10517081 CGTACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCCCCCGCACATCGAAGGCACCATGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
**
10517146 GCCGATACTTTTCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
10517188 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTTCCCGATGGTC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGC-TTCCCGATGGTC
*
10517253 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTTCGATGCTCCCGCACATCGAAGGCACCAAGG
65 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGG
*
10517318 TGCAGATACTTCCCGATGGTCCCGCAC
130 TGCCGATACTTCCCGATGGTCCCGCAC
10517345 ATCCGAGGCA
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 213 0.69
173 96 0.31
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.22
Consensus pattern (172 bp):
TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
Found at i:10517792 original size:3 final size:3
Alignment explanation
Indices: 10517778--10517812 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10517768 TAAAAGTTAC
* *
10517778 TAA TAG TAA TAA TAA TAA TAG TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10517813 TTATTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10517798 original size:15 final size:15
Alignment explanation
Indices: 10517778--10517812 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10517768 TAAAAGTTAC
10517778 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10517793 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10517808 TAATA
1 TAATA
10517813 TTATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (15 bp):
TAATAGTAATAATAA
Found at i:10517887 original size:3 final size:3
Alignment explanation
Indices: 10517879--10517915 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10517869 CAATCAAATT
10517879 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10517916 TTTGCTTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10525487 original size:43 final size:43
Alignment explanation
Indices: 10525420--10526589 Score: 1020
Period size: 43 Copynumber: 27.4 Consensus size: 43
10525410 TATTTTTAGC
* *
10525420 CCGACGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
10525463 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10525506 CCGAGGCTCCCGCACATGCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10525549 CCGAGGCTCCCGCACATCCGAGACACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10525592 CCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10525635 CCGATGCTCCCGCACAACC-AGGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
* *
10525678 CCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10525721 CCGATGCTCCCGCACAT--------CCAAGATGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * * **
10525756 CCGAGGCACCGGCACAT-CGAAGGCACCATGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* *
10525798 CCCGATGGTCCCGCACATCCGAGGCACCAAGGTGCCGATGAT-T
1 -CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * *
10525841 CCCGATGGTCCCGCACCA-CC-ATCGGC-CTAAGTTACCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10525885 CCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCT-T
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * ** * *
10525927 CCCGACGGTCCCAAACCA-CC-ATCGGC-CTAAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10525971 CTGATGCTCCCGCACAT-CGAAGGCACCGAGGTGCCGATGCT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* * ** *
10526013 CCCGACGGTCCCGCACCA-CC-ATCGGC-CTTAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* **
10526057 CCGATGCTCCCGCACAT-CGAAGGCACCATGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* ** * * *
10526099 CCCGATGGTCCCGCACCA-CC-ATCGGC-CTTAGTTACCGATGGTGC
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10526143 CCGATGGC-CTCGCACATCCGAGGCACCAAGGAGCCGATGCT-T
1 CCGAT-GCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* ** *
10526185 CCCGATGGTCCCGCACCA-CC-ACCGGC-CTGAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* **
10526229 CCGATGCTCTCGCACAT-CGAAGGCACCAAGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* * **
10526271 CCCGATGGTCCCGCACATCCGACGCACCAAGGTGCCGATTAT-T
1 -CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * *
10526314 CCCGATGGTCCCGCACCA-CC-A-TCGACCTAAGGTGCCGAAGGCGT
1 -CCGATGCTCCCGCA-CATCCGAGGC-ACC-AAGGTGCCGATGGTGT
* * *
10526358 CCGATGCTGCCGCACATCCAAGGCACCAAGGTGCCTATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10526401 CCGATGCTCCCGCACATCC-AGGGCACCAAGGTACCGATGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
** * *
10526444 CCGATGCTGTCGCACAACC-ATGGCACCAAGGTGCCGGTGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
* *
10526487 CCGATGGTCCCGCACATCCGAGGCACCAAGGTGACGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10526530 CCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10526573 CCGAGGCTCTCGCACAT
1 CCGATGCTCCCGCACAT
10526590 GTCTGGAACA
Statistics
Matches: 922, Mismatches: 136, Indels: 138
0.77 0.11 0.12
Matches are distributed among these distances:
35 31 0.03
41 1 0.00
42 47 0.05
43 792 0.86
44 50 0.05
45 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (43 bp):
CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
Found at i:10525700 original size:35 final size:35
Alignment explanation
Indices: 10525660--10525778 Score: 112
Period size: 35 Copynumber: 3.2 Consensus size: 35
10525650 AACCAGGGCA
*
10525660 CCAAGGTGCCGATGGTGTCCGATGCCCCCGCACAT
1 CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
*
10525695 CCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
1 --------CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
* * *
10525738 CCAAGATGCCGATGGTGTCCGAGGCACCGGCACAT
1 CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
*
10525773 CGAAGG
1 CCAAGG
10525779 CACCATGGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
35 35 0.51
43 34 0.49
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (35 bp):
CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
Found at i:10525754 original size:78 final size:78
Alignment explanation
Indices: 10525660--10525817 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
10525650 AACCAGGGCA
* * * **
10525660 CCAAGGTGCCGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT-CCG
1 CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACT-TCCCG
10525724 ATGCTCCCGCACAT
65 ATGCTCCCGCACAT
* * *
10525738 CCAAGATGCCGATGGTGTCCGAGGCACCGGCACATCGAAGGCACCATGGTGCCGATACTTCCCGA
1 CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACTTCCCGA
*
10525803 TGGTCCCGCACAT
66 TGCTCCCGCACAT
10525816 CC
1 CC
10525818 GAGGCACCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 69 0.99
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.16
Consensus pattern (78 bp):
CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACTTCCCGA
TGCTCCCGCACAT
Found at i:10527291 original size:43 final size:43
Alignment explanation
Indices: 10527226--10528123 Score: 452
Period size: 43 Copynumber: 20.9 Consensus size: 43
10527216 TTTTTTTGGC
* * * *
10527226 CCGACGGTGTCCC-ATGCTCCCGCACATGCAAGGCACCTAGGTC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * ** *
10527269 CCGATGCTTCCCGATGGTCCCGCACCA-CCATCGGC-CAAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* *
10527312 CCGATGGTGT-CCGATGCTCCCGCACATCCGAGGCACCTAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10527355 CCGATGGTGT-CCGATGCTCCCGCACATTCGAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * *
10527398 CCGATGCTTCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
*
10527441 CCGATGGTGT-CCGATGGTCCCGCACATCGAAGGCACC-AGGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** * * * *
10527484 CCGATACTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10527527 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * * *
10527570 CCGATGCTTCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
** *
10527613 CCGATGGTGT-CCGATGCCCCCGCACATCGAAGGCACC-ATGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** ** * * * *
10527656 CCGATACTTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10527699 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10527742 CCGATGCTTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTG
1 CCGATG-GTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * *
10527786 CCGATGGTGT-TCGATGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* ** * *
10527829 CAGATACTTCCCGATGGTCCCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10527872 TCGATGGTTCCCGATGGTCGCGCACCA-CCATCGG--CCTAAGTAG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGT-G
* ** * *
10527915 CCGATGGTGT-CCGATGCTCTTGCACATCCTAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10527958 CCGATGCTTCCCGACGGTCCCGCACCA-CCATCGG--CCTGAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCT-AGGTG
* * * * *
10528001 CCGATGGTGT-TCGACGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
*** * * * *
10528044 CCGATACCTCCTGATGGTCCCGCACATCCATCGGC-CCAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCA-AGGCACCTAGGTG
* * *
10528087 CCGATGGTGT-CCGATGATCCAGCACATCCAGGGCACC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACC
10528124 GACGGAGCTC
Statistics
Matches: 633, Mismatches: 165, Indels: 114
0.69 0.18 0.12
Matches are distributed among these distances:
42 60 0.09
43 491 0.78
44 77 0.12
45 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (43 bp):
CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
Found at i:10527376 original size:86 final size:86
Alignment explanation
Indices: 10527233--10528123 Score: 532
Period size: 86 Copynumber: 10.3 Consensus size: 86
10527223 GGCCCGACGG
* * * * * * *
10527233 TGTCCCATGCTCCCGCACATGCAAGGCACCTAGGTCCCGATGCT-TCCCGATGGTCCCGCACCA-
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CAT
* * *
10527296 CCATCGGC-CAAAGTTGCCGATGG
64 CCA-CGGCACCAAGGTGCCGATGC
*
10527319 TGTCCGATGCTCCCGCACATCCGA-GGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATT
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA-T
*
10527383 CGA-GGCACCAAGGTGCCGATGC
64 CCACGGCACCAAGGTGCCGATGC
* * * *
10527405 T-TCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTGCCGATGGTGTCCGATGGTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10527467 TCGAAGGCACCAGGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * *
10527491 T-TCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
10527553 TCCGA-GGCACCAAGGTGCCGATGC
63 TCC-ACGGCACCAAGGTGCCGATGC
* * * * *
10527577 T-TCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTGCCGATGGTGTCCGATGCCCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10527639 TCGAAGGCACCATGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * * * *
10527663 TTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACAT
1 TGTCCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
10527726 CCGA-GGCACCAAGGTGCCGATGC
64 CC-ACGGCACCAAGGTGCCGATGC
* * * *
10527749 TTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTGCCGATGGTGTTCGATGCTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10527812 TCGAAGGCACCAAGGTGCAGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * *
10527836 T-TCCCGATGGTCCCGCACATCCGA-GGCACCAAGGTGTCGATGGT-TCCCGATGGTCGCGCACC
1 TGT-CCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-C
* *
10527898 A-CCATCGGC-CTAA-GTAGCCGATGG
62 ATCCA-CGGCACCAAGGT-GCCGATGC
* ** * * * *
10527922 TGTCCGATGCTCTTGCACATCCTA-GGCACCAAGGTGCCGATGCT-TCCCGACGGTCCCGCACCA
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CA
** * *
10527985 -CCATCGGC-CTGAGTTGCCGATGG
63 TCCA-CGGCACCAAGGTGCCGATGC
* * * * * * *** *
10528008 TGTTCGACGCTCCCGCACATCGAAGGCACCAAGGTGCCGAT-ACCTCCTGATGGTCCCGCACATC
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCC-GATGCTCCCGCACATC
* *
10528072 CATCGGC-CCAAGTTGCCGATGG
65 CA-CGGCACCAAGGTGCCGATGC
* * *
10528094 TGTCCGATGATCCAGCACATCCAGGGCACC
1 TGTCCGATGGTCCCGCACATCCACGGCACC
10528124 GACGGAGCTC
Statistics
Matches: 686, Mismatches: 90, Indels: 58
0.82 0.11 0.07
Matches are distributed among these distances:
85 25 0.04
86 567 0.83
87 94 0.14
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (86 bp):
TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
ACGGCACCAAGGTGCCGATGC
Found at i:10527533 original size:172 final size:172
Alignment explanation
Indices: 10527353--10527853 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10527343 GGCACCTAGG
* * *
10527353 TGCCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10527418 CGCACCACTATCGGCCTTAGTTGCCGATGGTGTCCGATGGTCCCGCACATCGAAGGCACCAGGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
10527483 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
*
10527525 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCT
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10527590 CGTACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCCCCCGCACATCGAAGGCACCATGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
**
10527655 GCCGATACTTTTCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
10527697 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTTCCCGATGGTC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGC-TTCCCGATGGTC
*
10527762 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTTCGATGCTCCCGCACATCGAAGGCACCAAGG
65 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGG
*
10527827 TGCAGATACTTCCCGATGGTCCCGCAC
130 TGCCGATACTTCCCGATGGTCCCGCAC
10527854 ATCCGAGGCA
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 213 0.69
173 96 0.31
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.22
Consensus pattern (172 bp):
TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
Found at i:10528301 original size:3 final size:3
Alignment explanation
Indices: 10528287--10528321 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10528277 TAAAAGTTAC
* *
10528287 TAA TAG TAA TAA TAA TAA TAG TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10528322 TTATTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10528307 original size:15 final size:15
Alignment explanation
Indices: 10528287--10528321 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10528277 TAAAAGTTAC
10528287 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10528302 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10528317 TAATA
1 TAATA
10528322 TTATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (15 bp):
TAATAGTAATAATAA
Found at i:10528396 original size:3 final size:3
Alignment explanation
Indices: 10528388--10528424 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10528378 CAATCAAATT
10528388 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10528425 TTTGCTTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10535996 original size:43 final size:43
Alignment explanation
Indices: 10535929--10537098 Score: 1020
Period size: 43 Copynumber: 27.4 Consensus size: 43
10535919 TATTTTTAGC
* *
10535929 CCGACGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
10535972 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10536015 CCGAGGCTCCCGCACATGCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10536058 CCGAGGCTCCCGCACATCCGAGACACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10536101 CCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10536144 CCGATGCTCCCGCACAACC-AGGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
* *
10536187 CCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10536230 CCGATGCTCCCGCACAT--------CCAAGATGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * * **
10536265 CCGAGGCACCGGCACAT-CGAAGGCACCATGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* *
10536307 CCCGATGGTCCCGCACATCCGAGGCACCAAGGTGCCGATGAT-T
1 -CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * *
10536350 CCCGATGGTCCCGCACCA-CC-ATCGGC-CTAAGTTACCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10536394 CCGATGCTCTCGCACATCCTAGGCACCAAGGTGCCGATGCT-T
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * ** * *
10536436 CCCGACGGTCCCAAACCA-CC-ATCGGC-CTAAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10536480 CTGATGCTCCCGCACAT-CGAAGGCACCGAGGTGCCGATGCT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* * ** *
10536522 CCCGACGGTCCCGCACCA-CC-ATCGGC-CTTAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* **
10536566 CCGATGCTCCCGCACAT-CGAAGGCACCATGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* ** * * *
10536608 CCCGATGGTCCCGCACCA-CC-ATCGGC-CTTAGTTACCGATGGTGC
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* * *
10536652 CCGATGGC-CTCGCACATCCGAGGCACCAAGGAGCCGATGCT-T
1 CCGAT-GCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* ** *
10536694 CCCGATGGTCCCGCACCA-CC-ACCGGC-CTGAGTTGCCGATGGTGT
1 -CCGATGCTCCCGCA-CATCCGA--GGCACCAAGGTGCCGATGGTGT
* **
10536738 CCGATGCTCTCGCACAT-CGAAGGCACCAAGGTGCCGATACT-T
1 CCGATGCTCCCGCACATCCG-AGGCACCAAGGTGCCGATGGTGT
* * **
10536780 CCCGATGGTCCCGCACATCCGACGCACCAAGGTGCCGATTAT-T
1 -CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* * * *
10536823 CCCGATGGTCCCGCACCA-CC-A-TCGACCTAAGGTGCCGAAGGCGT
1 -CCGATGCTCCCGCA-CATCCGAGGC-ACC-AAGGTGCCGATGGTGT
* * *
10536867 CCGATGCTGCCGCACATCCAAGGCACCAAGGTGCCTATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10536910 CCGATGCTCCCGCACATCC-AGGGCACCAAGGTACCGATGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
** * *
10536953 CCGATGCTGTCGCACAACC-ATGGCACCAAGGTGCCGGTGGTGT
1 CCGATGCTCCCGCACATCCGA-GGCACCAAGGTGCCGATGGTGT
* *
10536996 CCGATGGTCCCGCACATCCGAGGCACCAAGGTGACGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
*
10537039 CCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
1 CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
* *
10537082 CCGAGGCTCTCGCACAT
1 CCGATGCTCCCGCACAT
10537099 GTCTGGAACA
Statistics
Matches: 922, Mismatches: 136, Indels: 138
0.77 0.11 0.12
Matches are distributed among these distances:
35 31 0.03
41 1 0.00
42 47 0.05
43 792 0.86
44 50 0.05
45 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (43 bp):
CCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGT
Found at i:10536209 original size:35 final size:35
Alignment explanation
Indices: 10536169--10536287 Score: 112
Period size: 35 Copynumber: 3.2 Consensus size: 35
10536159 AACCAGGGCA
*
10536169 CCAAGGTGCCGATGGTGTCCGATGCCCCCGCACAT
1 CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
*
10536204 CCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
1 --------CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
* * *
10536247 CCAAGATGCCGATGGTGTCCGAGGCACCGGCACAT
1 CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
*
10536282 CGAAGG
1 CCAAGG
10536288 CACCATGGTG
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
35 35 0.51
43 34 0.49
ACGTcount: A:0.21, C:0.34, G:0.30, T:0.15
Consensus pattern (35 bp):
CCAAGGTGCCGATGGTGTCCGATGCACCCGCACAT
Found at i:10536263 original size:78 final size:78
Alignment explanation
Indices: 10536169--10536326 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 78
10536159 AACCAGGGCA
* * * **
10536169 CCAAGGTGCCGATGGTGTCCGATGCCCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGT-CCG
1 CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACT-TCCCG
10536233 ATGCTCCCGCACAT
65 ATGCTCCCGCACAT
* * *
10536247 CCAAGATGCCGATGGTGTCCGAGGCACCGGCACATCGAAGGCACCATGGTGCCGATACTTCCCGA
1 CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACTTCCCGA
*
10536312 TGGTCCCGCACAT
66 TGCTCCCGCACAT
10536325 CC
1 CC
10536327 GAGGCACCAA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
77 1 0.01
78 69 0.99
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.16
Consensus pattern (78 bp):
CCAAGATGCCGATGGTGTCCGAGGCACCCGCACATCCAAGGCACCAAGGTGCCGATACTTCCCGA
TGCTCCCGCACAT
Found at i:10537800 original size:43 final size:43
Alignment explanation
Indices: 10537735--10538632 Score: 452
Period size: 43 Copynumber: 20.9 Consensus size: 43
10537725 TTTTTTTGGC
* * * *
10537735 CCGACGGTGTCCC-ATGCTCCCGCACATGCAAGGCACCTAGGTC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * ** *
10537778 CCGATGCTTCCCGATGGTCCCGCACCA-CCATCGGC-CAAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* *
10537821 CCGATGGTGT-CCGATGCTCCCGCACATCCGAGGCACCTAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10537864 CCGATGGTGT-CCGATGCTCCCGCACATTCGAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * *
10537907 CCGATGCTTCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
*
10537950 CCGATGGTGT-CCGATGGTCCCGCACATCGAAGGCACC-AGGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** * * * *
10537993 CCGATACTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10538036 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * * * *
10538079 CCGATGCTTCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
** *
10538122 CCGATGGTGT-CCGATGCCCCCGCACATCGAAGGCACC-ATGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTA-GGTG
** ** * * * *
10538165 CCGATACTTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * * *
10538208 CCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10538251 CCGATGCTTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTG
1 CCGATG-GTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGTG
* * * *
10538295 CCGATGGTGT-TCGATGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* ** * *
10538338 CAGATACTTCCCGATGGTCCCGCACATCCGAGGCACCAAGGTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10538381 TCGATGGTTCCCGATGGTCGCGCACCA-CCATCGG--CCTAAGTAG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCTAGGT-G
* ** * *
10538424 CCGATGGTGT-CCGATGCTCTTGCACATCCTAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
* * * *
10538467 CCGATGCTTCCCGACGGTCCCGCACCA-CCATCGG--CCTGAGTTG
1 CCGATGGTTCCCGATGGTCCCGCA-CATCCA-AGGCACCT-AGGTG
* * * * *
10538510 CCGATGGTGT-TCGACGCTCCCGCACATCGAAGGCACCAAGGTG
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
*** * * * *
10538553 CCGATACCTCCTGATGGTCCCGCACATCCATCGGC-CCAAGTTG
1 CCGATGGTTCCCGATGGTCCCGCACATCCA-AGGCACCTAGGTG
* * *
10538596 CCGATGGTGT-CCGATGATCCAGCACATCCAGGGCACC
1 CCGATGGT-TCCCGATGGTCCCGCACATCCAAGGCACC
10538633 GACGGAGCTC
Statistics
Matches: 633, Mismatches: 165, Indels: 114
0.69 0.18 0.12
Matches are distributed among these distances:
42 60 0.09
43 491 0.78
44 77 0.12
45 5 0.01
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (43 bp):
CCGATGGTTCCCGATGGTCCCGCACATCCAAGGCACCTAGGTG
Found at i:10537885 original size:86 final size:86
Alignment explanation
Indices: 10537742--10538632 Score: 532
Period size: 86 Copynumber: 10.3 Consensus size: 86
10537732 GGCCCGACGG
* * * * * * *
10537742 TGTCCCATGCTCCCGCACATGCAAGGCACCTAGGTCCCGATGCT-TCCCGATGGTCCCGCACCA-
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CAT
* * *
10537805 CCATCGGC-CAAAGTTGCCGATGG
64 CCA-CGGCACCAAGGTGCCGATGC
*
10537828 TGTCCGATGCTCCCGCACATCCGA-GGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATT
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA-T
*
10537892 CGA-GGCACCAAGGTGCCGATGC
64 CCACGGCACCAAGGTGCCGATGC
* * * *
10537914 T-TCCCGATGGTCCCGCACCA-CTATCGGC-CTTAGTTGCCGATGGTGTCCGATGGTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10537976 TCGAAGGCACCAGGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * *
10538000 T-TCCCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
10538062 TCCGA-GGCACCAAGGTGCCGATGC
63 TCC-ACGGCACCAAGGTGCCGATGC
* * * * *
10538086 T-TCCCGATGGTCTCGTACCA-CCATCGGC-CTTAGTTGCCGATGGTGTCCGATGCCCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10538148 TCGAAGGCACCATGGTGCCGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * * * * *
10538172 TTTTCGATGGTCCCGCACCA-CCATCGGC-CTTTGTTGCCGATGGTGCCCGATGCTCTCGCACAT
1 TGTCCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACAT
10538235 CCGA-GGCACCAAGGTGCCGATGC
64 CC-ACGGCACCAAGGTGCCGATGC
* * * *
10538258 TTTCCCGATGGTCCCGCACCA-CCATCGGC-CTTAGTTGCCGATGGTGTTCGATGCTCCCGCACA
1 TGT-CCGATGGTCCCGCA-CATCCA-CGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACA
* * * *
10538321 TCGAAGGCACCAAGGTGCAGATAC
63 TCCACGGCACCAAGGTGCCGATGC
* * * *
10538345 T-TCCCGATGGTCCCGCACATCCGA-GGCACCAAGGTGTCGATGGT-TCCCGATGGTCGCGCACC
1 TGT-CCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-C
* *
10538407 A-CCATCGGC-CTAA-GTAGCCGATGG
62 ATCCA-CGGCACCAAGGT-GCCGATGC
* ** * * * *
10538431 TGTCCGATGCTCTTGCACATCCTA-GGCACCAAGGTGCCGATGCT-TCCCGACGGTCCCGCACCA
1 TGTCCGATGGTCCCGCACATCC-ACGGCACCTAGGTGCCGATGGTGT-CCGATGCTCCCGCA-CA
** * *
10538494 -CCATCGGC-CTGAGTTGCCGATGG
63 TCCA-CGGCACCAAGGTGCCGATGC
* * * * * * *** *
10538517 TGTTCGACGCTCCCGCACATCGAAGGCACCAAGGTGCCGAT-ACCTCCTGATGGTCCCGCACATC
1 TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCC-GATGCTCCCGCACATC
* *
10538581 CATCGGC-CCAAGTTGCCGATGG
65 CA-CGGCACCAAGGTGCCGATGC
* * *
10538603 TGTCCGATGATCCAGCACATCCAGGGCACC
1 TGTCCGATGGTCCCGCACATCCACGGCACC
10538633 GACGGAGCTC
Statistics
Matches: 686, Mismatches: 90, Indels: 58
0.82 0.11 0.07
Matches are distributed among these distances:
85 25 0.04
86 567 0.83
87 94 0.14
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (86 bp):
TGTCCGATGGTCCCGCACATCCACGGCACCTAGGTGCCGATGGTGTCCGATGCTCCCGCACATCC
ACGGCACCAAGGTGCCGATGC
Found at i:10538042 original size:172 final size:172
Alignment explanation
Indices: 10537862--10538362 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10537852 GGCACCTAGG
* * *
10537862 TGCCGATGGTGTCCGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10537927 CGCACCACTATCGGCCTTAGTTGCCGATGGTGTCCGATGGTCCCGCACATCGAAGGCACCAGGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
10537992 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
*
10538034 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCT
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
* * *
10538099 CGTACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCCCCCGCACATCGAAGGCACCATGGT
66 CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
**
10538164 GCCGATACTTTTCGATGGTCCCGCACCACCATCGGCCTTTGT
131 GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
10538206 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTTCCCGATGGTC
1 TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGC-TTCCCGATGGTC
*
10538271 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTTCGATGCTCCCGCACATCGAAGGCACCAAGG
65 CCGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGG
*
10538336 TGCAGATACTTCCCGATGGTCCCGCAC
130 TGCCGATACTTCCCGATGGTCCCGCAC
10538363 ATCCGAGGCA
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 213 0.69
173 96 0.31
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.22
Consensus pattern (172 bp):
TGCCGATGGTGCCCGATGCTCTCGCACATCCGAGGCACCAAGGTGCCGATGCTTCCCGATGGTCC
CGCACCACCATCGGCCTTAGTTGCCGATGGTGTCCGATGCTCCCGCACATCGAAGGCACCAAGGT
GCCGATACTTCCCGATGGTCCCGCACCACCATCGGCCTTTGT
Found at i:10538810 original size:3 final size:3
Alignment explanation
Indices: 10538796--10538830 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10538786 TAAAAGTTAC
* *
10538796 TAA TAG TAA TAA TAA TAA TAG TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10538831 TTATTATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:10538816 original size:15 final size:15
Alignment explanation
Indices: 10538796--10538830 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10538786 TAAAAGTTAC
10538796 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10538811 TAATAGTAATAATAA
1 TAATAGTAATAATAA
10538826 TAATA
1 TAATA
10538831 TTATTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (15 bp):
TAATAGTAATAATAA
Found at i:10538905 original size:3 final size:3
Alignment explanation
Indices: 10538897--10538933 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10538887 CAATCAAATT
10538897 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
10538934 TTTGCTTAGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10551122 original size:86 final size:86
Alignment explanation
Indices: 10550981--10552363 Score: 665
Period size: 86 Copynumber: 15.9 Consensus size: 86
10550971 TCGCAACTTG
* *
10550981 GGCCGATGGAT-GTACGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAG
1 GGCCGATGG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAG
* *
10551044 CATCGAACACCATCGACAACTCA
64 CATCGAACACCATCGGCAACTAA
* * * **
10551067 GGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
* * *
10551132 TCGGACACCATCGGCTACTTA
66 TCGAACACCATCGGCAACTAA
* ** * * *
10551153 GGCCGATGGTGGTGCGCGACCAAT-GGGAACCATCGACACCTTGGTGCCTCGAATGTG-GGGACC
1 GGCCGATGGTGGTGCGGGACC-ATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGC
** **
10551216 ATCGAA-AGTATC-G-ATACATTG
65 ATCGAACACCATCGGCA-AC-TAA
*
10551237 GTGCC--TCGGAT-GTACGGGACCATCGGGAAGTATCGGCA-CTTGGTGCCTTC-GATGTGCGGG
1 G-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGC-GG
10551297 AGATCGCATCGAACACCATCGGCAACTAA
61 -GA--GCATCGAACACCATCGGCAACTAA
* *
10551326 GGCCGATGGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTGCCTCGGATGTGCGAGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGG-AAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGC
** *
10551391 ATCGGGCACCATCGGCAACAAA
65 ATCGAACACCATCGGCAACTAA
* * * * *
10551413 GGCCGATGGTGGTGCGGGACCATCGAGAAGTATCGGCACCATGGTG-TTC-GATGTACGGGGGCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
* * *
10551476 TCGGACACCATCGGTAATTAA
66 TCGAACACCATCGGCAACTAA
* * * * * * ** *
10551497 GGCCGATGGTGGTGTGCGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGATATGCGACACCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** * **
10551562 TCGGAA-AGTATCGGCACCTTG
66 TC-GAACACCATCGGCAACTAA
* * * ** * * **
10551583 GTGCC-TTCGAT-GTGCGGGAGCATC-GGACACCATCGGTAACTCAG-GCCGAT-GG-TGGTGCG
1 G-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCC--TCGGAT-GTGCG
* * * * * *
10551642 GGACCATCGGGA-AGCATCGGTACCT-T
60 GGAGCATC-GAACACCATCGGCAACTAA
* * * ** * * ***
10551668 GGTACC--TCGGAT-GTGCGAGAGCATCGGGTACCATCGGTAACAAAG-GCCGAT-GG-TGGTGC
1 GG--CCGAT-GG-TGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC--TCGGAT-GTGC
* ** * *
10551727 GGGACCATCGAGA-AGTATC-GCACCCT-G
59 GGGAGCATCGA-ACACCATCGGCA-ACTAA
* * ** ** * * *
10551754 GTGCC-TTCGAT-GTGCGGGACCATC-GGACACAATAAGCAACTAAGGT-CGAT-GG-TGGTGCG
1 G-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCT-TGGTGC-CTCGGAT-GTGCG
* * * * * **
10551813 GGACCATCGGGA-AGCATCGGTACCTTG
60 GGAGCATC-GAACACCATCGGCAACTAA
*
10551840 GTGCC--TCGGAT-GTGCGAGGACCATCGGGAAGTATCGACACCTTGGTGCCTTC-GATGTGCGG
1 G-GCCGAT-GG-TGGTGCG-GGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGG
* * *
10551901 GAGCATCGGACACCATCGGTAACTCA
61 GAGCATCGAACACCATCGGCAACTAA
* * * *
10551927 GGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGATGTGCGAGAGCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** *
10551992 TCGGGCACCATCGGCAACAAA
66 TCGAACACCATCGGCAACTAA
*
10552013 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTC-GATGTGCGGGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGC
*
10552077 ATCGGACACCATCGGCAACTAA
65 ATCGAACACCATCGGCAACTAA
* * * *
10552099 GGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCCTCGGATCTGCGGGACCA
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
** * **
10552164 TCGGAA-AGTATCGGCACCTTG
66 TC-GAACACCATCGGCAACTAA
* ** ** *
10552185 GTGTCTTCGAT-GTGCG-G-GGGAGCATCGAACACCATCGGTAACTCAGGC-CGATGGTG-GTGC
1 G-G-C--CGATGGTG-GTGCGGGACCATCG-GGA--A---GT-A-TC-GGCACCTTGGTGCCT-C
** *
10552245 GAGACCAT-CGGGAAGCATCGGACACCATCGGCAACTAA
51 G-GA-TGTGCGGG-AGCATCGAACACCATCGGCAACTAA
*
10552283 GGTCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGC
1 GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGC
*
10552347 ATCGGACACCATCGGCA
65 ATCGAACACCATCGGCA
10552364 CCTAGGTGCC
Statistics
Matches: 1027, Mismatches: 181, Indels: 178
0.74 0.13 0.13
Matches are distributed among these distances:
83 20 0.02
84 100 0.10
85 90 0.09
86 525 0.51
87 122 0.12
88 34 0.03
89 32 0.03
90 25 0.02
91 18 0.02
93 1 0.00
94 6 0.01
95 7 0.01
96 19 0.02
97 11 0.01
98 17 0.02
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (86 bp):
GGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCA
TCGAACACCATCGGCAACTAA
Found at i:10551257 original size:42 final size:41
Alignment explanation
Indices: 10551184--10551297 Score: 124
Period size: 42 Copynumber: 2.7 Consensus size: 41
10551174 AATGGGAACC
* *
10551184 ATCGACACCTTGGTGCCTCGAATGTGGGGACCATC-GAAAGT
1 ATCGACA-CTTGGTGCCTCGGATGTCGGGACCATCGGAAAGT
* *
10551225 ATCGATACATTGGTGCCTCGGATGTACGGGACCATCGGGAAGT
1 ATCGACAC-TTGGTGCCTCGGATGT-CGGGACCATCGGAAAGT
*
10551268 ATCGGCACTTGGTGCCTTC-GATGTGCGGGA
1 ATCGACACTTGGTGCC-TCGGATGT-CGGGA
10551298 GATCGCATCG
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
40 1 0.02
41 21 0.34
42 27 0.44
43 13 0.21
ACGTcount: A:0.21, C:0.23, G:0.32, T:0.24
Consensus pattern (41 bp):
ATCGACACTTGGTGCCTCGGATGTCGGGACCATCGGAAAGT
Found at i:10551448 original size:43 final size:43
Alignment explanation
Indices: 10551314--10552447 Score: 179
Period size: 43 Copynumber: 26.1 Consensus size: 43
10551304 ATCGAACACC
10551314 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGT
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGT
* * ** * * * **
10551358 ATCGGTACCTTGGTGCC--TCGGAT-GTGCGAGAGCATCGGGCACC
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGT
* *
10551401 ATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGAGAAGT
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * * * * * ** **
10551444 ATCGGC-ACCATGG-TGTTCGAT-GTACGGGGGCATC-GGACACC
1 ATCGGCAACTAAGGCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
* * * * * *
10551485 ATCGGTAATTAAGGCCGATGGTGGTGTGCGACCATCAGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * ** * ** *
10551528 ATCGGTACCTTGGTGCC--TCGGAT-ATGCGACACCATCGGAAAGT
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGT
* ** * * * **
10551571 ATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACC
1 ATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
* * *
10551614 ATCGGTAACTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * * * * * **
10551657 ATCGGTACCT-TGGTACC--TCGGAT-GTGCGAGAGCATCGGGTACC
1 ATCGGCAACTAAGG--CCGAT-GG-TGGTGCGGGACCATCGGGAAGT
* * *
10551700 ATCGGTAACAAAGGCCGATGGTGGTGCGGGACCATCGAGAAGT
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * * * **
10551743 ATC-GCACCCT-GGTGCC-TTCGAT-GTGCGGGACCATC-GGACACA
1 ATCGGCA-ACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
** * *
10551785 ATAAGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * **
10551828 ATCGGTACCTTGGTGCC--TCGGAT-GTGCGAGGACCATCGGGAAGT
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCG-GGACCATCGGGAAGT
* * ** * * * **
10551872 ATCGACACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACC
1 ATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
* * * *
10551915 ATCGGTAACTCAGGCCGATGGTGGTGCGGGACCATCAGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * ** * * * **
10551958 ATCGGTACCTTGGTGCC--TCGGAT-GTGCGAGAGCATCGGGCACC
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGT
*
10552001 ATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * * * * **
10552044 ATCGGCACCCT-GGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACC
1 ATCGGCA-ACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
*
10552087 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* * ** * *
10552130 ATCGGTACCTTGGTGCC--TCGGAT-CTGCGGGACCATCGGAAAGT
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGT
* ** * * **
10552173 ATCGGCACCTTGGTGTCTTCGAT-GTGCG-G-GGGAGCATC-GAACACC
1 ATCGGCAACTAAG-G-C--CGATGGTG-GTGCGGGACCATCGGGA-AGT
* * *
10552218 ATCGGTAACTCAGGCCGATGGTGGTGCGAGACCATCGGGAAGCAT
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAG--T
*
10552263 CGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGT
1 --------ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
* ** * * * **
10552314 ATCGGCACCTTGGTGCC-TTCGAT-GTGCGGGAGCATC-GGACACC
1 ATCGGCAACTAAG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGT
* * * *
10552357 ATCGGCACCTAGGTGCC--TCGGAT-GTGCGGGAGCATC-GGACATT
1 ATCGGCAACTAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGA-AGT
** *
10552400 ATCGGCAACTTTGGCCGATGGTGGTGCGGGACCATCGGGAAGC
1 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
10552443 ATCGG
1 ATCGG
10552448 GACCTAGGTG
Statistics
Matches: 794, Mismatches: 203, Indels: 187
0.67 0.17 0.16
Matches are distributed among these distances:
40 2 0.00
41 25 0.03
42 96 0.12
43 480 0.60
44 122 0.15
45 26 0.03
46 3 0.00
48 1 0.00
51 1 0.00
53 38 0.05
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (43 bp):
ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGT
Found at i:10551520 original size:260 final size:256
Alignment explanation
Indices: 10550988--10551458 Score: 667
Period size: 260 Copynumber: 1.8 Consensus size: 256
10550978 TTGGGCCGAT
* *
10550988 GGATGTACGGGACCATCGGGAGGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACA
1 GGATGTACGCGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACA
* *
10551053 CCATCGACAACTCAGGCCGATGGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAG
66 CCATCGACAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAG
* ** *
10551118 GATGTGCAAGAGCATCGGACACCATCGGCTACTTAGGCCGATGGTGGTGCGCGACCAATGGGAAC
131 GATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAATGAGAAC
* ** *
10551183 CATCGACACCTTGGTGCCTCGAATGTGGGGACCATCGAAAGTATCGATACATTGGTGCCTC
196 CATCGACACCATGGTGCCTCGAATGTGGGGACCATCGAAACCATCGATACATTAGTGCCTC
*
10551244 GGATGTACGGGACCATCGGGAAGTATCGGCA-CTTGGTGCCTTCGATGTGCGGGAGATCGCATCG
1 GGATGTACGCGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGC-GG-GA--GCATCG
* * *
10551308 AACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGTATCGGTACCTTGGTG
62 AACACCATCGACAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTG
* * * *
10551373 CCTCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACC-ATC
126 CCTAGGATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAAT-
** *
10551437 GAGAAGTATCGGCACCATGGTG
190 GAGAACCATCGACACCATGGTG
10551459 TTCGATGTAC
Statistics
Matches: 191, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
255 19 0.10
256 32 0.17
257 2 0.01
259 50 0.26
260 88 0.46
ACGTcount: A:0.22, C:0.25, G:0.34, T:0.19
Consensus pattern (256 bp):
GGATGTACGCGACCATCGGGAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACA
CCATCGACAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTAG
GATGTGCAAGAGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGCGACCAATGAGAAC
CATCGACACCATGGTGCCTCGAATGTGGGGACCATCGAAACCATCGATACATTAGTGCCTC
Found at i:10551618 original size:129 final size:128
Alignment explanation
Indices: 10551431--10551694 Score: 388
Period size: 129 Copynumber: 2.1 Consensus size: 128
10551421 GTGGTGCGGG
* *
10551431 ACCATC-GAGAAGTATCGGCACCATGGTGTTCGATGTACGGGGGCATCGGACACCATCGGTAATT
1 ACCATCGGAGAAGTATCGGCACCATGGTGTTCGATGTACGGGAGCATCGGACACCATCGGTAACT
* *
10551495 AAGGCCGATGGTGGTGTGCGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGATATGCGAC
66 AAGGCCGATGGTGGTGCGCGACCATCAGGAAGCATCGGTACCTTGGTACCTCGGATATGCGAC
* *
10551558 ACCATCGGA-AAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGTAA
1 ACCATCGGAGAAGTATCGGCACCATGGTG--TTCGATGTACGGGAGCATCGGACACCATCGGTAA
* * * * *
10551622 CTCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACCTCGGATGTGCGAG
64 CTAAGGCCGATGGTGGTGCGCGACCATCAGGAAGCATCGGTACCTTGGTACCTCGGATATGCGAC
*
10551687 AGCATCGG
1 ACCATCGG
10551695 GTACCATCGG
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
127 24 0.20
128 2 0.02
129 96 0.79
ACGTcount: A:0.22, C:0.25, G:0.33, T:0.20
Consensus pattern (128 bp):
ACCATCGGAGAAGTATCGGCACCATGGTGTTCGATGTACGGGAGCATCGGACACCATCGGTAACT
AAGGCCGATGGTGGTGCGCGACCATCAGGAAGCATCGGTACCTTGGTACCTCGGATATGCGAC
Found at i:10551736 original size:129 final size:129
Alignment explanation
Indices: 10551460--10551736 Score: 306
Period size: 129 Copynumber: 2.1 Consensus size: 129
10551450 ACCATGGTGT
* ** * *
10551460 TCGATGTACGGGGGCATCGGACACCATCGGTAATTAAGGCCGATGGTGGTGTGCGACCATCAGGA
1 TCGATGTGCGGGACCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGCGACCATCAGGA
* ** * *** *
10551525 AGCATCGGTACCTTGGTGCCTCGGATATGCGACACCATCGGAAAGTATCGGCACCTTGGTGCCT
66 AGCATCGGTACCTTGGTACCTCGGATATGCGACACCATCGGAAACCATCGGCAACAAAGTGCCA
* * * *
10551589 TCGATGTGCGGGAGCATCGGACACCATCGGTAACTCAGGCCGATGGTGGTGCGGGACCATCGGGA
1 TCGATGTGCGGGACCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGCGACCATCAGGA
* * * ** *
10551654 AGCATCGGTACCTTGGTACCTCGGATGTGCGAGAGCATCGGGTACCATCGGTAACAAAG-GCCGA
66 AGCATCGGTACCTTGGTACCTCGGATATGCGACACCATCGGAAACCATCGGCAACAAAGTGCC-A
*
10551718 T-GGTGGTGCGGGACCATCG
1 TCGAT-GTGCGGGACCATCG
10551737 AGAAGTATCG
Statistics
Matches: 123, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
128 5 0.04
129 118 0.96
ACGTcount: A:0.21, C:0.25, G:0.34, T:0.20
Consensus pattern (129 bp):
TCGATGTGCGGGACCATCGGACACCATCGGTAACTAAGGCCGATGGTGGTGCGCGACCATCAGGA
AGCATCGGTACCTTGGTACCTCGGATATGCGACACCATCGGAAACCATCGGCAACAAAGTGCCA
Found at i:10551783 original size:171 final size:173
Alignment explanation
Indices: 10551558--10551867 Score: 500
Period size: 171 Copynumber: 1.8 Consensus size: 173
10551548 GATATGCGAC
* * * ** *
10551558 ACCATCGGAAAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGTAAC
1 ACCATCGGAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAATAAGCAAC
*
10551623 TCAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACCTCGGATGTGCGA-G
66 TAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACCTCGGATGTGCGAGG
*
10551687 AGCATCGGGTACCATCGGTAACAAAGGCCGATGGTGGTGCGGG
131 ACCATCGGGTACCATCGGTAACAAAGGCCGATGGTGGTGCGGG
10551730 ACCATC-GAGAAGTATC-GCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAATAAGCAA
1 ACCATCGGA-AAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAATAAGCAA
* *
10551793 CTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCCTCGGATGTGCGAG
65 CTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACCTCGGATGTGCGAG
10551858 GACCATCGGG
130 GACCATCGGG
10551868 AAGTATCGAC
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
171 104 0.83
172 22 0.17
ACGTcount: A:0.22, C:0.25, G:0.35, T:0.19
Consensus pattern (173 bp):
ACCATCGGAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAATAAGCAAC
TAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTACCTCGGATGTGCGAGG
ACCATCGGGTACCATCGGTAACAAAGGCCGATGGTGGTGCGGG
Found at i:10551911 original size:130 final size:129
Alignment explanation
Indices: 10551723--10551996 Score: 426
Period size: 130 Copynumber: 2.1 Consensus size: 129
10551713 GCCGATGGTG
*
10551723 GTGCG-GGACCATCGAGAAGTATCGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAAT
1 GTGCGAGGACCATCGGGAAGTATCGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAAT
* *
10551787 AAGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGCATCGGTACCTTGGTGCCTCGGAT
66 AAGCAACTAAGGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGAT
* * *
10551851 GTGCGAGGACCATCGGGAAGTATCGACACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCA
1 GTGCGAGGACCATCGGGAAGTATCG-CACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAA
** * *
10551916 TCGGTAACTCAGGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGAT
65 TAAGCAACTAAGGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGAT
*
10551981 GTGCGA-GAGCATCGGG
1 GTGCGAGGACCATCGGG
10551997 CACCATCGGC
Statistics
Matches: 133, Mismatches: 11, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
128 5 0.04
129 27 0.20
130 101 0.76
ACGTcount: A:0.21, C:0.25, G:0.35, T:0.19
Consensus pattern (129 bp):
GTGCGAGGACCATCGGGAAGTATCGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACAAT
AAGCAACTAAGGCCGATGGTGGTGCGGGACCATCAGGAAGCATCGGTACCTTGGTGCCTCGGAT
Found at i:10552318 original size:53 final size:53
Alignment explanation
Indices: 10552205--10552322 Score: 175
Period size: 53 Copynumber: 2.2 Consensus size: 53
10552195 TGTGCGGGGG
* * *
10552205 AGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCATCGGGA
1 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGA
* *
10552258 AGCATCGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGA
1 AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGA
*
10552311 AGTATCGG-CACC
1 AGCATCGGACACC
10552323 TTGGTGCCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 4 0.07
53 55 0.93
ACGTcount: A:0.25, C:0.26, G:0.33, T:0.15
Consensus pattern (53 bp):
AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGAGACCATCGGGA
Found at i:10552344 original size:184 final size:182
Alignment explanation
Indices: 10552070--10552447 Score: 546
Period size: 184 Copynumber: 2.1 Consensus size: 182
10552060 CTTCGATGTG
10552070 CGGG-AGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
* ** * *
10552134 GTACCTTGGTGCCTCGGATCTGCGGGACCATCGGAAAGTATCGGCACCTTGGTGTCTTC-GATGT
66 GCACCTTGGTGCCTCGGATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTG-CCTCGGATGT
*
10552198 GCGGGGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACCAT
130 GC--GGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
* *
10552253 CGGGAAGCATCGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGTATCG
1 CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
* * *
10552318 GCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGGATGT
66 GCACCTTGGTGCC-TCGGATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTGCCTCGGATGT
* ** ** *
10552382 GCGGGAGCATCGGACATTATCGGCAACTTTGGCCGATGGTGGTGCGGGACCAT
130 GCGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
10552435 CGGGAAGCATCGG
1 CGGGAAGCATCGG
10552448 GACCTAGGTG
Statistics
Matches: 175, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
182 57 0.33
183 7 0.04
184 109 0.62
185 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.36, T:0.19
Consensus pattern (182 bp):
CGGGAAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCG
GCACCTTGGTGCCTCGGATCTGCGGGACCATCGGAAACCATCGGCACCTAGGTGCCTCGGATGTG
CGGGAGCATCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGAGACCAT
Found at i:10552384 original size:86 final size:86
Alignment explanation
Indices: 10552253--10552483 Score: 217
Period size: 86 Copynumber: 2.7 Consensus size: 86
10552243 GCGAGACCAT
* * *
10552253 CGGGAAGCATCGGACACCATCGGCAACTAAGGT-CGATGG-TGGTGCGGGACCATCGGGA-AGTA
1 CGGG-AGCATCGGACACCATCGGCACCT-AGGTGC-CTGGAT-GTGCGGGAGCATCGGGACAGTA
* *
10552315 TCGGCACCTTGGTGCC-TTCGAT-GTG
62 TCGGCAACTTGG-GCCGAT-GATGGTG
*
10552340 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGGATGTGCGGGAGCATC-GGACATTATCG
1 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCT-GGATGTGCGGGAGCATCGGGACAGTATCG
* *
10552404 GCAACTTTGGCCGATGGTGGTG
65 GCAACTTGGGCCGATGATGGTG
* * * *
10552426 CGGGACCATCGGGA-AGCATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCAT-GGGACA
1 CGGGAGCATC-GGACACCATCGGCACCTAGGTGCC-TGGATGTGCGGGAGCATCGGGACA
10552484 CCATCGGGCC
Statistics
Matches: 123, Mismatches: 12, Indels: 19
0.80 0.08 0.12
Matches are distributed among these distances:
85 13 0.11
86 101 0.82
87 9 0.07
ACGTcount: A:0.20, C:0.25, G:0.37, T:0.19
Consensus pattern (86 bp):
CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTGGATGTGCGGGAGCATCGGGACAGTATCGG
CAACTTGGGCCGATGATGGTG
Found at i:10552430 original size:270 final size:267
Alignment explanation
Indices: 10551988--10552490 Score: 678
Period size: 270 Copynumber: 1.9 Consensus size: 267
10551978 GATGTGCGAG
*
10551988 AGCATCGGGCACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACC
1 AGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACC
10552053 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGA
66 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCC-ATGGTGGTGCGGGA
* * *
10552118 CCATCGGGAAGCATCGGTACCTTGGTGCCTCGGATCTGCGGGACCATCGGAAAGTATCGGCACCT
130 CCATCGGGAAGCATCGGCAACTTGGTGCCTCGGATCTGCGGGACCATCGGAAAGCATCGGCACCT
* *
10552183 TGGTGTCTT-CGATGTGCGGGGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGA
195 AGGTGCCTTGC-ATGTGC--GGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGA
10552247 GACCATCGGGA
257 GACCATCGGGA
* *
10552258 AGCATCGGACACCATCGGCAACTAAGGTCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACC
1 AGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACC
* * *
10552323 TTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TCGGAT-GTGCGG
66 CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCAT-GG-TGGTGCGG
* ** * * *
10552386 GAGCATC-GGACATTATCGGCAACTTTG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAGCATCG
128 GACCATCGGGA-AGCATCGGCAACTTGGTGCC--TCGGAT-CTGCGGGACCATCGGAAAGCATCG
* * *
10552447 GGACCTAGGTGCCTTGCATGTGCGGGAGCATGGGACACCATCGG
189 GCACCTAGGTGCCTTGCATGTGCGGGAGCATCGAACACCATCGG
10552491 GCCAAAAAAA
Statistics
Matches: 205, Mismatches: 20, Indels: 18
0.84 0.08 0.07
Matches are distributed among these distances:
268 19 0.09
269 8 0.04
270 172 0.84
271 6 0.03
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.18
Consensus pattern (267 bp):
AGCATCGGACACCATCGGCAACAAAGGCCGATGGTGGTGCGGGACCATCGGGAAGTATCGGCACC
CTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTAAGGCCATGGTGGTGCGGGAC
CATCGGGAAGCATCGGCAACTTGGTGCCTCGGATCTGCGGGACCATCGGAAAGCATCGGCACCTA
GGTGCCTTGCATGTGCGGGAGCATCGAACACCATCGGTAACTCAGGCCGATGGTGGTGCGAGACC
ATCGGGA
Found at i:10552470 original size:43 final size:44
Alignment explanation
Indices: 10552294--10552490 Score: 167
Period size: 43 Copynumber: 4.6 Consensus size: 44
10552284 GTCGATGGTG
* ** *
10552294 GTGCGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTT-CGAT
1 GTGCGGGAGCATCGGGACACCATCGGCACCTAGGTGCCTTGC-AT
* *
10552337 GTGCGGGAGCATC-GGACACCATCGGCACCTAGGTGCCTCGGAT
1 GTGCGGGAGCATCGGGACACCATCGGCACCTAGGTGCCTTGCAT
** * ** * *
10552380 GTGCGGGAGCATC-GGACATTATCGGCAACTTTG-GCCGATG-GT
1 GTGCGGGAGCATCGGGACACCATCGGCACCTAGGTGCC-TTGCAT
* * *
10552422 GGTGCGGGACCATCGGGA-AGCATCGGGACCTAGGTGCCTTGCAT
1 -GTGCGGGAGCATCGGGACACCATCGGCACCTAGGTGCCTTGCAT
10552466 GTGCGGGAGCAT-GGGACACCATCGG
1 GTGCGGGAGCATCGGGACACCATCGG
10552491 GCCAAAAAAA
Statistics
Matches: 121, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
42 11 0.09
43 103 0.85
44 7 0.06
ACGTcount: A:0.18, C:0.25, G:0.37, T:0.19
Consensus pattern (44 bp):
GTGCGGGAGCATCGGGACACCATCGGCACCTAGGTGCCTTGCAT
Found at i:10552491 original size:43 final size:43
Alignment explanation
Indices: 10552253--10552490 Score: 166
Period size: 43 Copynumber: 5.5 Consensus size: 43
10552243 GCGAGACCAT
* ** *
10552253 CGGGAAGCATCGGACACCATCGGCAACTAAGGT-CGATG-GTGGTG
1 CGGG-AGCATCGGACACCATCGGCACCT-AGGTGCCTTGCAT-GTG
* ** *
10552297 CGGGACCATCGGGA-AGTATCGGCACCTTGGTGCCTT-CGATGTG
1 CGGGAGCATC-GGACACCATCGGCACCTAGGTGCCTTGC-ATGTG
* *
10552340 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGGATGTG
1 CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTTGCATGTG
** * ** * *
10552383 CGGGAGCATCGGACATTATCGGCAACTTTG-GCCGATG-GTGGTG
1 CGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TTGCAT-GTG
* * *
10552426 CGGGACCATCGGGA-AGCATCGGGACCTAGGTGCCTTGCATGTG
1 CGGGAGCATC-GGACACCATCGGCACCTAGGTGCCTTGCATGTG
*
10552469 CGGGAGCATGGGACACCATCGG
1 CGGGAGCATCGGACACCATCGG
10552491 GCCAAAAAAA
Statistics
Matches: 148, Mismatches: 34, Indels: 25
0.71 0.16 0.12
Matches are distributed among these distances:
42 13 0.09
43 120 0.81
44 15 0.10
ACGTcount: A:0.20, C:0.25, G:0.37, T:0.18
Consensus pattern (43 bp):
CGGGAGCATCGGACACCATCGGCACCTAGGTGCCTTGCATGTG
Found at i:10553185 original size:43 final size:43
Alignment explanation
Indices: 10553121--10554237 Score: 696
Period size: 43 Copynumber: 26.4 Consensus size: 43
10553111 TGTTCCAAAC
* *
10553121 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* * * *
10553164 ATGTGCGGGAGCCTCGAACACCATCGTCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10553207 ATGTGCGGGACCATCGGACACCACCGG--CCTTGGTGCC-CTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GG
* ** * *
10553248 TTGTGCGACAGCATCAGACACCATCGGTACC-TGGTGCC-CTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GG
* * * *
10553290 ATGTGCGAGAGCATCGGACACCATAGG--CCATGGTGCCTTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* ** * *
10553331 ATGTGCGGCAGCATCGGATGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGC-CTCGG
* * ** * * *
10553374 -GGTGCGGGACCATCGGA-AAAATCGACACCTTGGTACCTCAG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10553415 ATGTGCGGGAACATCGGGA-ACTATTGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10553458 ATGTGCGAGAGCATCGGACACCATCGGTAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10553501 -TGGTGGCGGGACCATCAGGA-AGCATCGGCACCTTGGTGCCTCGG
1 AT-GT-GCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * * * *
10553545 ATGAGC-GAAGCATCGGGCACCATCGGTAACTAAGGT-CGAT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCT-TGGTGC-CTCGG
* * ** * *
10553587 -TGGTGGGGGGACCATCGGGA-AGTATCGGCACCATGGTGCTTTC-G
1 AT-GT-GCGGGAGCATC-GGACACCATCGGCACCTTGGTGC-CTCGG
* * **
10553631 ATGTGCGGGAGCATCGGGCACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGG
* * * * *
10553674 -TGGTGCGGGAACGTCGGGCAGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10553717 ATGTGCGGGAGCATCAGACACCATCGGTAACTTAGGT-CGAT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGC-CTCGG
** * * * * *
10553760 -TGGTTTGGGACCGTCGGGA-AGCATCGGTACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGG
* *** * *
10553803 ATGTGCGAGAGCATCGGACACCATCCATAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10553846 -TGGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * ** *
10553889 ATGTGCGGTACCATTGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCA-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10553932 ATGTGTGGGTGCCTCGGACACCATCTGCACC----T---T-GG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10553967 ATGTGTGGGAGCATCGGACACCATCGGTACCTTGGTGCCTTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
10554010 ATGTGCGGGAGCATCGGACACCATCGG-ACCTTGGTG-CTCTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10554052 TTGTGCTGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
* * *
10554095 ATGTGCGGGAGCCTCGGACACCATCGG--TCTTGGTGCCTCGC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
*
10554136 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
*
10554179 ATGTGC-GGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
10554221 ATGTGCGGGAGCATCGG
1 ATGTGCGGGAGCATCGG
10554238 GCTAAAGATA
Statistics
Matches: 832, Mismatches: 167, Indels: 150
0.72 0.15 0.13
Matches are distributed among these distances:
35 29 0.03
39 2 0.00
40 6 0.01
41 118 0.14
42 186 0.22
43 409 0.49
44 72 0.09
45 10 0.01
ACGTcount: A:0.18, C:0.27, G:0.34, T:0.21
Consensus pattern (43 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10553308 original size:83 final size:84
Alignment explanation
Indices: 10553121--10553346 Score: 271
Period size: 83 Copynumber: 2.7 Consensus size: 84
10553111 TGTTCCAAAC
* * *
10553121 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTG-CCTCGGATGTGCGGGAGCCTCGAACAC
1 ATGTGCGAGAGCATCGGACACCATCGG--CCTTGGTGCCCT-GGATGTGCGGCAGCATCGAACAC
*
10553185 CATCGTCACCTTGGTGCCTTGG
63 CATCGTCACCTTGGTGCCCTGG
* * * * *
10553207 ATGTGCGGGACCATCGGACACCACCGGCCTTGGTGCCCTGGTTGTGCGACAGCATC-AGACACCA
1 ATGTGCGAGAGCATCGGACACCATCGGCCTTGGTGCCCTGGATGTGCGGCAGCATCGA-ACACCA
10553271 TCGGT-ACC-TGGTGCCCTGG
65 TC-GTCACCTTGGTGCCCTGG
* * *
10553290 ATGTGCGAGAGCATCGGACACCATAGGCCATGGTGCCTTGGATGTGCGGCAGCATCG
1 ATGTGCGAGAGCATCGGACACCATCGGCCTTGGTGCCCTGGATGTGCGGCAGCATCG
10553347 GATGCCTTCG
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
83 59 0.50
84 32 0.27
85 5 0.04
86 23 0.19
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (84 bp):
ATGTGCGAGAGCATCGGACACCATCGGCCTTGGTGCCCTGGATGTGCGGCAGCATCGAACACCAT
CGTCACCTTGGTGCCCTGG
Found at i:10554117 original size:85 final size:84
Alignment explanation
Indices: 10553964--10554237 Score: 417
Period size: 85 Copynumber: 3.2 Consensus size: 84
10553954 ATCTGCACCT
* * *
10553964 TGGATGTGTGGGAGCATCGGACACCATCGGTACCTTGGTGCCTTGGATGTGCGGGAGCATCGGAC
1 TGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGAC
10554029 ACCATCGGACCTTGGTGCTC
66 ACCATCGGACCTTGGTGC-C
* * *
10554049 TGGTTGTGCTGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGAC
1 TGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGAC
*
10554114 ACCATCGG-TCTTGGTGCC
66 ACCATCGGACCTTGGTGCC
* *
10554132 TCGCATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGC-GGAGCATCGGA
1 T-GGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGA
10554196 CACCATCGGCACCTTGGTGCC
65 CACCATCGG-ACCTTGGTGCC
10554217 TTGGATGTGCGGGAGCATCGG
1 -TGGATGTGCGGGAGCATCGG
10554238 GCTAAAGATA
Statistics
Matches: 170, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
83 21 0.12
84 55 0.32
85 93 0.55
86 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.22
Consensus pattern (84 bp):
TGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGAC
ACCATCGGACCTTGGTGCC
Found at i:10554154 original size:126 final size:127
Alignment explanation
Indices: 10553965--10554237 Score: 435
Period size: 126 Copynumber: 2.1 Consensus size: 127
10553955 TCTGCACCTT
* * *
10553965 GGATGTGTGGGAGCATCGGACACCATCGGTACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACA
1 GGATGTGCGGGAGCATCGGACACCATCGGTA-CTTGGTGCCTCGCATGTGCGGGAGCATCGGACA
*
10554030 CCATCGG-ACCTTGGTG-CTCTGGTTGTGCTGGAGCATCGGACACCATCGGCACCTTGGTGCCTC
65 CCATCGGCACCTTGGTGCCTC-GGATGTGC-GGAGCATCGGACACCATCGGCACCTTGGTGCCTC
* *
10554093 GGATGTGCGGGAGCCTCGGACACCATCGGT-CTTGGTGCCTCGCATGTGCGGGAGCCTCGGACAC
1 GGATGTGCGGGAGCATCGGACACCATCGGTACTTGGTGCCTCGCATGTGCGGGAGCATCGGACAC
*
10554157 CATCGGCACCTTGGTGCCTCGGATGTGCGGAGCATCGGACACCATCGGCACCTTGGTGCCTT
66 CATCGGCACCTTGGTGCCTCGGATGTGCGGAGCATCGGACACCATCGGCACCTTGGTGCCTC
10554219 GGATGTGCGGGAGCATCGG
1 GGATGTGCGGGAGCATCGG
10554238 GCTAAAGATA
Statistics
Matches: 135, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
126 88 0.65
127 16 0.12
128 31 0.23
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.22
Consensus pattern (127 bp):
GGATGTGCGGGAGCATCGGACACCATCGGTACTTGGTGCCTCGCATGTGCGGGAGCATCGGACAC
CATCGGCACCTTGGTGCCTCGGATGTGCGGAGCATCGGACACCATCGGCACCTTGGTGCCTC
Found at i:10566288 original size:3 final size:3
Alignment explanation
Indices: 10566280--10566316 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10566270 TCTAAGCAAA
10566280 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10566317 AATTTGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10566384 original size:3 final size:3
Alignment explanation
Indices: 10566378--10566412 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10566368 ATAATAATAA
* *
10566378 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10566413 GTAACTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10566398 original size:15 final size:15
Alignment explanation
Indices: 10566378--10566412 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10566368 ATAATAATAA
10566378 TATTATTATTATTAC
1 TATTATTATTATTAC
10566393 TATTATTATTATTAC
1 TATTATTATTATTAC
10566408 TATTA
1 TATTA
10566413 GTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10566698 original size:43 final size:43
Alignment explanation
Indices: 10566576--10567088 Score: 223
Period size: 43 Copynumber: 11.9 Consensus size: 43
10566566 GAGCTCCGTC
* * * * *
10566576 GGTGCCCTGGATGTGCTGGATCATC-GGACACCATCGGCAACTT
1 GGTGCCTTCGATGTGCGGGACCATCGGGA-ACCATCGGCACCTT
* * * ***
10566619 GG-GCCGATGGATGTGCGGGACCATCAGGAGGTATCGGCACCTT
1 GGTGCC-TTCGATGTGCGGGACCATCGGGAACCATCGGCACCTT
* * * * *
10566662 GGTGCCTTCGATGTGCGGGAGCGTC-GAACACCATCGGCAACTC
1 GGTGCCTTCGATGTGCGGGACCATCGGGA-ACCATCGGCACCTT
* * * * *
10566705 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGAAGCATCGGCACCTT
1 GGTGCC-TTCGAT-GTGCGGGACCATCGGGAACCATCGGCACCTT
** ** *
10566748 GGTGCCTAGGATGTGCAAGAGCATC-GGACACCATCGGCTA-CTT
1 GGTGCCTTCGATGTGCGGGACCATCGGGA-ACCATCGGC-ACCTT
* * * * *
10566791 AG-GCCGAT-GGTGGTGCGCGACCATCGGGAACCATCGACACCTT
1 GGTGCC-TTCGAT-GTGCGGGACCATCGGGAACCATCGGCACCTT
** *
10566834 GGTGCC-TCGGATGTGCGGGACCATCGGGAAGTATCTGCACCTT
1 GGTGCCTTC-GATGTGCGGGACCATCGGGAACCATCGGCACCTT
* * * *
10566877 GGTGCCTTCGATGTGCGGGAGCATC-GAACACCATCGGCAACTA
1 GGTGCCTTCGATGTGCGGGACCATCGGGA-ACCATCGGCACCTT
* * * *
10566920 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-TTCGAT-GTGCGGGACCATCGGG-AACCATCGGCACCTT
* * * * **
10566964 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCTTC-GATGTGCGGGACCATCGGGAACCATCGGCACCTT
* * * ** ** *
10567007 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-TTCGAT-GTGCGGGACCATCGGGAACCATCGGCACCTT
**
10567050 GGTGCCTTCGATGTGCGGGGGCATC-GGACACCATCGGCA
1 GGTGCCTTCGATGTGCGGGACCATCGGGA-ACCATCGGCA
10567089 ACTAAGGCCG
Statistics
Matches: 344, Mismatches: 93, Indels: 66
0.68 0.18 0.13
Matches are distributed among these distances:
42 33 0.10
43 248 0.72
44 57 0.17
45 6 0.02
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCTTCGATGTGCGGGACCATCGGGAACCATCGGCACCTT
Found at i:10566721 original size:86 final size:86
Alignment explanation
Indices: 10566576--10566860 Score: 349
Period size: 86 Copynumber: 3.3 Consensus size: 86
10566566 GAGCTCCGTC
* * * * *
10566576 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTTGGGCCGATGGAT-GTGCGGGAC
1 GGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCCGATGG-TGGTGCGGGAC
* * *
10566640 CATCAGGAGGTATCGGCACCTT
65 CATCGGGAAGCATCGGCACCTT
* * *
10566662 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGACC
1 GGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACC
*
10566727 GTCGGGAAGCATCGGCACCTT
66 ATCGGGAAGCATCGGCACCTT
** ** * *
10566748 GGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTTAGGCCGATGGTGGTGCGCGACC
1 GGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACC
* *
10566813 ATCGGGAACCATCGACACCTT
66 ATCGGGAAGCATCGGCACCTT
*
10566834 GGTGCC-TCGGATGTGCGGGACCATCGG
1 GGTGCCTTC-GATGTGCGGGAGCATCGG
10566861 GAAGTATCTG
Statistics
Matches: 168, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
85 1 0.01
86 167 0.99
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.19
Consensus pattern (86 bp):
GGTGCCTTCGATGTGCGGGAGCATCGGACACCATCGGCAACTTAGGCCGATGGTGGTGCGGGACC
ATCGGGAAGCATCGGCACCTT
Found at i:10566850 original size:129 final size:130
Alignment explanation
Indices: 10566717--10567002 Score: 412
Period size: 129 Copynumber: 2.2 Consensus size: 130
10566707 GCCGATGGTG
* * *
10566717 GTGCGGGACCGTCGGGAAGCATCGGCACCTTGGTGCCTAGGATGTGCAAGAGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
* *
10566782 CGGCTACTTAGGCCGATGGTGGTGCGCGACCATCGGG-AACCATCGACACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGACACCTTGGTGCCTCGGAT
* * * **
10566846 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
* * *
10566911 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGACACCTTGGTGCCTCGGAT
* * * *
10566976 GTGCGAGAGCATCGGGCACCATCGGCA
1 GTGCGGGACCATCGGGAAGCATCGGCA
10567003 ACAAAGGCCG
Statistics
Matches: 137, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
129 91 0.66
130 46 0.34
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (130 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTACGATGTGCAAGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAAACCATCGACACCTTGGTGCCTCGGAT
Found at i:10566988 original size:87 final size:86
Alignment explanation
Indices: 10566846--10567179 Score: 434
Period size: 86 Copynumber: 4.0 Consensus size: 86
10566836 TGCCTCGGAT
* * *
10566846 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10566911 CGGCAACTAAGGCCGATGGTG
66 CGGCAACAAAGGCCGATGGTG
* *
10566932 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
10566996 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACAAAGGCCGATGGTG
** * * *
10567019 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10567084 CGGCAACTAAGGCCGATGGTG
66 CGGCAACAAAGGCCGATGGTG
* * * *
10567105 GTACGAGACCATCGGGAAGC-TTGG-----TGGTGCC-TCGGATGTGC-GGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
10567162 TCGGCAACAAAGGCCGAT
65 TCGGCAACAAAGGCCGAT
10567180 CCTGCCTGGC
Statistics
Matches: 221, Mismatches: 23, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
79 33 0.15
80 14 0.06
85 3 0.01
86 94 0.43
87 77 0.35
ACGTcount: A:0.22, C:0.26, G:0.35, T:0.17
Consensus pattern (86 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACAAAGGCCGATGGTG
Found at i:10567028 original size:173 final size:165
Alignment explanation
Indices: 10566846--10567179 Score: 515
Period size: 173 Copynumber: 2.0 Consensus size: 165
10566836 TGCCTCGGAT
** * *
10566846 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
* *
10566911 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGG-AAGC-TCGG-----TGGTGCCTCGGAT
10566976 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
124 GTGCG-GAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10567019 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
*
10567084 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCTTGGTGGTGCCTCGGATGTGCGGA
66 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCTCGGTGGTGCCTCGGATGTGCGGA
10567149 GCATCGGGCACCATCGGCAACAAAGGCCGAT
131 GCATCGGGCACCATCGGCAACAAAGGCCGAT
10567180 CCTGCCTGGC
Statistics
Matches: 152, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
165 33 0.22
166 18 0.12
171 3 0.02
172 4 0.03
173 94 0.62
ACGTcount: A:0.22, C:0.26, G:0.35, T:0.17
Consensus pattern (165 bp):
GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCTCGGTGGTGCCTCGGATGTGCGGA
GCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10567032 original size:130 final size:129
Alignment explanation
Indices: 10566769--10567034 Score: 320
Period size: 130 Copynumber: 2.1 Consensus size: 129
10566759 TGTGCAAGAG
* * *
10566769 CATCGGACACCATCGGCTACTTAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGACACCTT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGACACCTT
* ** * * *** * *
10566834 GGTGCCTCGGATGTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAG
66 GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGGCAACAAAGTGCCATCGATGTGCGGGAC
* * *
10566898 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCT
1 CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGG-AACCATCGACACCT
* * *
10566963 TGGTGCCTCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GGTGGTGCGGG
65 TGGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGGCAACAAAGTGCC-ATCGAT-GTGCGGG
10567026 AC
128 AC
10567028 CATCGAA
1 CATCGAA
10567035 AAGTATCGGC
Statistics
Matches: 115, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
129 51 0.44
130 64 0.56
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.18
Consensus pattern (129 bp):
CATCGAACACCATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGAACCATCGACACCTT
GGTGCCTCGGATGTGCGAGACCATCGGGAACCATCGGCAACAAAGTGCCATCGATGTGCGGGAC
Found at i:10567357 original size:65 final size:67
Alignment explanation
Indices: 10567288--10567412 Score: 184
Period size: 65 Copynumber: 1.9 Consensus size: 67
10567278 CGGGAAGCAT
* *
10567288 CGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATC-G-CACCATCGGCAACAAAGGCCGATCGGC
1 CGGCACCCTGGTGCCTTC-GATGTGCGAGACCATCGGACACCATCGGCAACAAAGGCCGATCGGC
10567350 CAA
65 CAA
* *
10567353 CGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGAT
1 CGGCACCCTGGTGCCTTCGATGTGCGAGACCATCGGACACCATCGGCAACAAAGGCCGAT
10567413 AGTGGTGCGG
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
65 28 0.53
66 3 0.06
67 22 0.42
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (67 bp):
CGGCACCCTGGTGCCTTCGATGTGCGAGACCATCGGACACCATCGGCAACAAAGGCCGATCGGCC
AA
Found at i:10567504 original size:129 final size:129
Alignment explanation
Indices: 10567353--10567613 Score: 400
Period size: 129 Copynumber: 2.0 Consensus size: 129
10567343 GATCGGCCAA
10567353 CGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
1 CGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
*
10567418 TGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATGTGCGGGAGCATCGGACACCAT
66 TGCGGGACCATCGGGAAGCATCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCAT
* ** *
10567482 CGGCA-CCTAGGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTTTGGCCGATGGT
1 CGGCACCCT-GGTGCCTTC-GATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGT
* * * * *
10567545 GGTGCGGGACCATCGGGAAGCATCGGGACCTAGGTGCCTTGCATGTGCGGGAGCATGGGACACCG
64 GGTGCGGGACCATCGGGAAGCATCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCA
10567610 T
129 T
10567611 CGG
1 CGG
10567614 GCCAAAGCGC
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
128 5 0.04
129 115 0.96
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (129 bp):
CGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
TGCGGGACCATCGGGAAGCATCGGCACCTAGGTGCCTCGAATGTGCGGGAGCATCGGACACCAT
Found at i:10567516 original size:86 final size:87
Alignment explanation
Indices: 10567353--10567613 Score: 238
Period size: 86 Copynumber: 3.0 Consensus size: 87
10567343 GATCGGCCAA
* * * *
10567353 CGGCACCCTGGTGCCTTCG-ATGTGCGGGACCATCGGACACCATCGGCAACTAAG-G-C-CGATA
1 CGGCACCTTGGTGCC-TCGAATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCG-CA
* *
10567414 GTGGTGCGGGACCATCGGGA-AGCAT
64 -T-GTGCGGGAGCATCGGGACACCAT
* *
10567439 CGGCACCTTGGTGCCTCGAATGTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCCTCGGATG
1 CGGCACCTTGGTGCCTCGAATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGCATG
10567504 TGCGGGAGCATC-GGACACCAT
66 TGCGGGAGCATCGGGACACCAT
* * * * * *
10567525 CGGCAACTT--TGGC-CGATGGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTAGGTGCCTTG
1 CGGCACCTTGGTGCCTCGA--AT-GTGCGGGACCATC-GGACACCATCGGCACCTAGGTGCCTCG
*
10567586 CATGTGCGGGAGCAT-GGGACACCGT
62 CATGTGCGGGAGCATCGGGACACCAT
10567611 CGG
1 CGG
10567614 GCCAAAGCGC
Statistics
Matches: 149, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
83 3 0.02
84 3 0.02
85 7 0.05
86 127 0.85
87 5 0.03
88 2 0.01
89 2 0.01
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (87 bp):
CGGCACCTTGGTGCCTCGAATGTGCGGGACCATCGGACACCATCGGCACCTAGGTGCCTCGCATG
TGCGGGAGCATCGGGACACCAT
Found at i:10567614 original size:43 final size:42
Alignment explanation
Indices: 10567353--10567613 Score: 203
Period size: 43 Copynumber: 6.1 Consensus size: 42
10567343 GATCGGCCAA
*
10567353 CGGCACCCT-GGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 CGGCA-CCTAGGTGCC-TCGATGTGCGGGAGCATCGGACACCAT
* * * * *
10567396 CGGCAACTAAG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCAT
1 CGGCACCTAGGTGCC--TCGAT-GTGCGGGAGCATC-GGACACCAT
*
10567439 CGGCACCTTGGTGCCTCGAATGTGCGGGAGCATCGGACACCAT
1 CGGCACCTAGGTGCCTCG-ATGTGCGGGAGCATCGGACACCAT
10567482 CGGCACCTAGGTGCCTCGGATGTGCGGGAGCATCGGACACCAT
1 CGGCACCTAGGTGCCTC-GATGTGCGGGAGCATCGGACACCAT
* ** * * *
10567525 CGGCAACTTTG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCAT
1 CGGCACCTAGGTGCC--TCGAT-GTGCGGGAGCATC-GGACACCAT
* * * *
10567568 CGGGACCTAGGTGCCTTGCATGTGCGGGAGCATGGGACACCGT
1 CGGCACCTAGGTGCCTCG-ATGTGCGGGAGCATCGGACACCAT
10567611 CGG
1 CGG
10567614 GCCAAAGCGC
Statistics
Matches: 174, Mismatches: 27, Indels: 34
0.74 0.11 0.14
Matches are distributed among these distances:
42 20 0.11
43 138 0.79
44 16 0.09
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (42 bp):
CGGCACCTAGGTGCCTCGATGTGCGGGAGCATCGGACACCAT
Found at i:10568307 original size:43 final size:43
Alignment explanation
Indices: 10568246--10569415 Score: 930
Period size: 43 Copynumber: 27.4 Consensus size: 43
10568236 TGTTCCAGAC
*
10568246 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10568289 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10568332 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10568375 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10568418 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10568461 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10568504 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10568547 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10568590 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10568633 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10568676 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10568719 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10568762 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10568805 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10568848 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
** * *
10568891 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10568934 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10568977 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10569020 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10569063 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10569098 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10569141 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10569184 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10569227 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10569270 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10569313 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10569356 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10569399 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10569416 GCTAAAAATA
Statistics
Matches: 918, Mismatches: 130, Indels: 158
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 1 0.00
42 51 0.06
43 780 0.85
44 56 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10568392 original size:86 final size:86
Alignment explanation
Indices: 10568246--10569415 Score: 1041
Period size: 86 Copynumber: 13.7 Consensus size: 86
10568236 TGTTCCAGAC
* * *
10568246 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10568310 CATCGTCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * * **
10568332 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10568397 ATCGGTACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* * * *
10568418 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10568483 TTCGGCACCTTAGGT-CGAT-GG
66 ATCGGCACCTT-GGTGC-CTCGG
* ** * *
10568504 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
**
10568566 -AGTATCGGCACCTTGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* * ** * *
10568590 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10568652 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * ** *
10568676 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** *
10568738 -AGTATCGGCACCATGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10568762 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10568824 AGCATCGGCACCTCGGTGCCTTC-G
63 ACCATCGGCACCTTGGTGCC-TCGG
* * * ** * *
10568848 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10568910 AGCATCGGCACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * *
10568934 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10568996 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* ** * * * * * *
10569020 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
*
10569084 CATCGGCA------T--CTTGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10569098 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
10569163 ATCGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* *
10569184 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10569248 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * *
10569270 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
10569334 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10569356 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10569416 GCTAAAAATA
Statistics
Matches: 938, Mismatches: 107, Indels: 78
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.00
78 64 0.07
80 1 0.00
84 1 0.00
85 21 0.02
86 823 0.88
87 25 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTCGG
Found at i:10569102 original size:35 final size:35
Alignment explanation
Indices: 10569057--10569132 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10569047 CACCATGGTG
* * *
10569057 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10569092 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10569127 CCTTGG
1 CCTTGG
10569133 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10576928 original size:3 final size:3
Alignment explanation
Indices: 10576920--10576956 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10576910 TCTAAGCAAA
10576920 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10576957 AATTTGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10577029 original size:3 final size:3
Alignment explanation
Indices: 10577023--10577057 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10577013 ATAATAATAA
* *
10577023 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10577058 GTAACTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10577043 original size:15 final size:15
Alignment explanation
Indices: 10577023--10577057 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10577013 ATAATAATAA
10577023 TATTATTATTATTAC
1 TATTATTATTATTAC
10577038 TATTATTATTATTAC
1 TATTATTATTATTAC
10577053 TATTA
1 TATTA
10577058 GTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10577343 original size:43 final size:43
Alignment explanation
Indices: 10577221--10578118 Score: 431
Period size: 43 Copynumber: 20.9 Consensus size: 43
10577211 GAGCTCCGTC
* * * * *
10577221 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTT
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* ***
10577264 GG-GCCGATGGATGTGCGGGACCATCAGGA-GGTATCGGCACCTT
1 GGTGCC-ATCGATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * * *
10577307 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTC
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10577350 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* ** *
10577393 GGTGCC-TAGGATGTGCAAGAGCATCGGACACCATCGGCTA-CTT
1 GGTGCCAT-CGATGTGCGGGACCATCGGACACCATCGGC-ACCTT
* * * *
10577436 AG-GCCGAT-GGTGGTGCGCGACCATCGGGA-ACCATCGACACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
** *
10577479 GGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCTGCACCTT
1 GGTGCCATC-GATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * *
10577522 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10577565 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10577609 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * ** *
10577652 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-ATCGAT-GTGCGGGACCATCGGACACCATCGGCACCTT
* ** * *
10577695 GGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10577738 AG-GCCGAT-GGTGGTACGAGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10577781 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * ** *
10577824 AG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCCT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * *
10577867 GGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * *
10577910 AG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* *
10577953 GGTGCC-TCGAATGTGCGGGAGCATCGGACACCATCGGCACCTA
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGGCACCTT
* *
10577996 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTT
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10578039 TG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTA
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * *
10578082 GGTGCC-TTGCATGTGCGGGAGCATGGGACACCGTCGG
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGG
10578119 GCCAAAAAAA
Statistics
Matches: 635, Mismatches: 157, Indels: 126
0.69 0.17 0.14
Matches are distributed among these distances:
42 67 0.11
43 475 0.75
44 88 0.14
45 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
Found at i:10577848 original size:172 final size:172
Alignment explanation
Indices: 10577491--10577991 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10577481 TGCCTCGGAT
* * *
10577491 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10577556 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
10577621 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
** *
10577664 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10577729 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
10577794 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
131 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10577836 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10577901 CGGCAACTAAGGCCGATAGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
* *
10577966 TGCGGGAGCATCGGACACCATCGGCA
131 TGCGAGAGCATCGGGCACCATCGGCA
10577992 CCTAGGTGCC
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 215 0.70
173 94 0.30
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10578015 original size:86 final size:85
Alignment explanation
Indices: 10577491--10577991 Score: 720
Period size: 86 Copynumber: 5.8 Consensus size: 85
10577481 TGCCTCGGAT
* * *
10577491 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10577556 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* *
10577577 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
*
10577641 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACTAAGGCC-ATGGTG
** * * *
10577664 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10577729 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* * * *
10577750 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
*
10577814 TCGGCAACAAAGGCCGATGGTG
65 TCGGCAACTAAGGCC-ATGGTG
* * *
10577836 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10577901 CGGCAACTAAGGCCGATAGTG
66 CGGCAACTAAGGCC-ATGGTG
10577922 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGAATGTGCGGGAGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCA
10577986 TCGGCA
65 TCGGCA
10577992 CCTAGGTGCC
Statistics
Matches: 373, Mismatches: 36, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
85 5 0.01
86 289 0.77
87 79 0.21
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (85 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCATGGTG
Found at i:10578065 original size:172 final size:172
Alignment explanation
Indices: 10577448--10578023 Score: 747
Period size: 172 Copynumber: 3.3 Consensus size: 172
10577438 GCCGATGGTG
* * * *
10577448 GTGCGCGACCATCGGGA-ACCATCGACACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGT
1 GTGCGAGAGCATC-GGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATC-GGAAGT
* * * *
10577511 ATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGT
64 ATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGT
* *
10577576 GGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
129 GGTGCGAGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGAAT
* * * * *
10577621 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGAAAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATCG-GAAG
* ** *
10577683 TATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTAAGGCCGATGG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
* *
10577748 TGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* * * *
10577793 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATC-GGAAG
*
10577855 TATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
*
10577920 TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* *
10577965 GTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TCGGATGTGCGGGAGCATCGGA
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGA
10578024 CACCATCGGC
Statistics
Matches: 365, Mismatches: 29, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
171 4 0.01
172 238 0.65
173 122 0.33
174 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGAAGTAT
CGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
TGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
Found at i:10578816 original size:43 final size:43
Alignment explanation
Indices: 10578755--10579924 Score: 930
Period size: 43 Copynumber: 27.4 Consensus size: 43
10578745 TGTTCCAGAC
*
10578755 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10578798 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10578841 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10578884 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10578927 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10578970 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10579013 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10579056 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10579099 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10579142 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10579185 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10579228 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10579271 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10579314 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10579357 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
** * *
10579400 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10579443 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10579486 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10579529 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10579572 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10579607 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10579650 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10579693 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10579736 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10579779 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10579822 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10579865 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10579908 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10579925 GCTAAAAATA
Statistics
Matches: 918, Mismatches: 130, Indels: 158
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 1 0.00
42 51 0.06
43 780 0.85
44 56 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10578901 original size:86 final size:86
Alignment explanation
Indices: 10578755--10579924 Score: 1041
Period size: 86 Copynumber: 13.7 Consensus size: 86
10578745 TGTTCCAGAC
* * *
10578755 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10578819 CATCGTCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * * **
10578841 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10578906 ATCGGTACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* * * *
10578927 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10578992 TTCGGCACCTTAGGT-CGAT-GG
66 ATCGGCACCTT-GGTGC-CTCGG
* ** * *
10579013 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
**
10579075 -AGTATCGGCACCTTGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* * ** * *
10579099 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10579161 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * ** *
10579185 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** *
10579247 -AGTATCGGCACCATGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10579271 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10579333 AGCATCGGCACCTCGGTGCCTTC-G
63 ACCATCGGCACCTTGGTGCC-TCGG
* * * ** * *
10579357 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10579419 AGCATCGGCACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * *
10579443 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10579505 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* ** * * * * * *
10579529 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
*
10579593 CATCGGCA------T--CTTGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10579607 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
10579672 ATCGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* *
10579693 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10579757 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * *
10579779 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
10579843 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10579865 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10579925 GCTAAAAATA
Statistics
Matches: 938, Mismatches: 107, Indels: 78
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.00
78 64 0.07
80 1 0.00
84 1 0.00
85 21 0.02
86 823 0.88
87 25 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTCGG
Found at i:10579611 original size:35 final size:35
Alignment explanation
Indices: 10579566--10579641 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10579556 CACCATGGTG
* * *
10579566 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10579601 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10579636 CCTTGG
1 CCTTGG
10579642 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10587437 original size:3 final size:3
Alignment explanation
Indices: 10587429--10587465 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
10587419 TCTAAGCAAA
10587429 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10587466 AATTTGATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10587538 original size:3 final size:3
Alignment explanation
Indices: 10587532--10587566 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
10587522 ATAATAATAA
* *
10587532 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAC TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10587567 GTAACTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:10587552 original size:15 final size:15
Alignment explanation
Indices: 10587532--10587566 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
10587522 ATAATAATAA
10587532 TATTATTATTATTAC
1 TATTATTATTATTAC
10587547 TATTATTATTATTAC
1 TATTATTATTATTAC
10587562 TATTA
1 TATTA
10587567 GTAACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10587852 original size:43 final size:43
Alignment explanation
Indices: 10587730--10588627 Score: 431
Period size: 43 Copynumber: 20.9 Consensus size: 43
10587720 GAGCTCCGTC
* * * * *
10587730 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTT
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* ***
10587773 GG-GCCGATGGATGTGCGGGACCATCAGGA-GGTATCGGCACCTT
1 GGTGCC-ATCGATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * * *
10587816 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTC
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10587859 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* ** *
10587902 GGTGCC-TAGGATGTGCAAGAGCATCGGACACCATCGGCTA-CTT
1 GGTGCCAT-CGATGTGCGGGACCATCGGACACCATCGGC-ACCTT
* * * *
10587945 AG-GCCGAT-GGTGGTGCGCGACCATCGGGA-ACCATCGACACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
** *
10587988 GGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCTGCACCTT
1 GGTGCCATC-GATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * *
10588031 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10588074 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10588118 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * ** *
10588161 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-ATCGAT-GTGCGGGACCATCGGACACCATCGGCACCTT
* ** * *
10588204 GGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10588247 AG-GCCGAT-GGTGGTACGAGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10588290 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * ** *
10588333 AG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCCT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * *
10588376 GGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * *
10588419 AG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* *
10588462 GGTGCC-TCGAATGTGCGGGAGCATCGGACACCATCGGCACCTA
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGGCACCTT
* *
10588505 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTT
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10588548 TG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTA
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * *
10588591 GGTGCC-TTGCATGTGCGGGAGCATGGGACACCGTCGG
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGG
10588628 GCCAAAAAAA
Statistics
Matches: 635, Mismatches: 157, Indels: 126
0.69 0.17 0.14
Matches are distributed among these distances:
42 67 0.11
43 475 0.75
44 88 0.14
45 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
Found at i:10588357 original size:172 final size:172
Alignment explanation
Indices: 10588000--10588500 Score: 867
Period size: 172 Copynumber: 2.9 Consensus size: 172
10587990 TGCCTCGGAT
* * *
10588000 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10588065 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
10588130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
** *
10588173 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10588238 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
10588303 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
131 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10588345 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10588410 CGGCAACTAAGGCCGATAGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
* *
10588475 TGCGGGAGCATCGGACACCATCGGCA
131 TGCGAGAGCATCGGGCACCATCGGCA
10588501 CCTAGGTGCC
Statistics
Matches: 309, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
172 215 0.70
173 94 0.30
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10588524 original size:86 final size:85
Alignment explanation
Indices: 10588000--10588500 Score: 720
Period size: 86 Copynumber: 5.8 Consensus size: 85
10587990 TGCCTCGGAT
* * *
10588000 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10588065 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* *
10588086 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
*
10588150 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACTAAGGCC-ATGGTG
** * * *
10588173 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10588238 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* * * *
10588259 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
*
10588323 TCGGCAACAAAGGCCGATGGTG
65 TCGGCAACTAAGGCC-ATGGTG
* * *
10588345 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10588410 CGGCAACTAAGGCCGATAGTG
66 CGGCAACTAAGGCC-ATGGTG
10588431 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGAATGTGCGGGAGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCA
10588495 TCGGCA
65 TCGGCA
10588501 CCTAGGTGCC
Statistics
Matches: 373, Mismatches: 36, Indels: 12
0.89 0.09 0.03
Matches are distributed among these distances:
85 5 0.01
86 289 0.77
87 79 0.21
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (85 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCATGGTG
Found at i:10588574 original size:172 final size:172
Alignment explanation
Indices: 10587957--10588532 Score: 747
Period size: 172 Copynumber: 3.3 Consensus size: 172
10587947 GCCGATGGTG
* * * *
10587957 GTGCGCGACCATCGGGA-ACCATCGACACCTTGGTGCC-TCGGATGTGCGGGACCATCGGGAAGT
1 GTGCGAGAGCATC-GGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATC-GGAAGT
* * * *
10588020 ATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTAAGGCCGATGGT
64 ATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGT
* *
10588085 GGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
129 GGTGCGAGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGAAT
* * * * *
10588130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGAAAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATCG-GAAG
* ** *
10588192 TATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACACCATCGGCAACTAAGGCCGATGG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
* *
10588257 TGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* * * *
10588302 GTGCGAGAGCATCGGGCACCATCGGCAACAAAG-GCCGAT-GG-TGGTGCGGGACCATCGGGAAG
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCC-ATCGGAT-GTGCGGGACCATC-GGAAG
*
10588364 TATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
63 TATCGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAG
*
10588429 TGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
128 TGGTGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
* *
10588474 GTGCGGGAGCATCGGACACCATCGGCACCTAGGTGCC-TCGGATGTGCGGGAGCATCGGA
1 GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGA
10588533 CACCATCGGC
Statistics
Matches: 365, Mismatches: 29, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
171 4 0.01
172 238 0.65
173 122 0.33
174 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGAGAGCATCGGACACCATCGGCACCTAGGTGCCATCGGATGTGCGGGACCATCGGAAGTAT
CGGCACCTTGGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTAAGGCCGATAGTGG
TGCGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAAT
Found at i:10589325 original size:43 final size:43
Alignment explanation
Indices: 10589264--10590433 Score: 930
Period size: 43 Copynumber: 27.4 Consensus size: 43
10589254 TGTTCCAGAC
*
10589264 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10589307 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10589350 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10589393 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10589436 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10589479 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10589522 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10589565 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10589608 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10589651 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10589694 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10589737 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * **
10589780 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10589823 -TGGTGCGGGA-CCGTCGGGA-AGCATCGGCACCTCGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * *
10589866 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
** * *
10589909 -TGGTTTGGGA-CCGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10589952 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10589995 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10590038 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10590081 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10590116 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10590159 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10590202 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10590245 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10590288 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10590331 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10590374 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10590417 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10590434 GCTAAAAATA
Statistics
Matches: 918, Mismatches: 130, Indels: 158
0.76 0.11 0.13
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 1 0.00
42 51 0.06
43 780 0.85
44 56 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10589410 original size:86 final size:86
Alignment explanation
Indices: 10589264--10590433 Score: 1041
Period size: 86 Copynumber: 13.7 Consensus size: 86
10589254 TGTTCCAGAC
* * *
10589264 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10589328 CATCGTCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * * **
10589350 ATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGTTGTGCGACAGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
*
10589415 ATCGGTACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* * * *
10589436 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
* *
10589501 TTCGGCACCTTAGGT-CGAT-GG
66 ATCGGCACCTT-GGTGC-CTCGG
* ** * *
10589522 -TGGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTG-CGTCGGATGTGCGGGACCATCGGGA
1 AT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATC-GGA
**
10589584 -AGTATCGGCACCTTGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* * ** * *
10589608 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10589670 AGCATCGGCTCCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * ** *
10589694 ATGTGCGAGG-CCATCGGGCACCATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA
1 ATGTGCG-GGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGA
** *
10589756 -AGTATCGGCACCATGGTGCCTTC-G
62 CACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10589780 ATGTGCGGGAGCATCGGACACCATCGGCAACTAAG-GCCGATGG-TGGTGCGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10589842 AGCATCGGCACCTCGGTGCCTTC-G
63 ACCATCGGCACCTTGGTGCC-TCGG
* * * ** * *
10589866 ATGTGCGGGAGCATCAGACACCATCGGCAACTTAG-GCCGATGG-TGGTTTGGGACCGTCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
* *
10589928 AGCATCGGCACCTTGGTGCCTAGG
63 ACCATCGGCACCTTGGTGCCTCGG
* * * * *
10589952 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGATGG-TGGTGCGGGACCATCGGGA-
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATGGAT-GTGCGGGAGCATC-GGAC
*
10590014 ATCATCGGCACCTTGGTGCCTCGG
63 ACCATCGGCACCTTGGTGCCTCGG
* ** * * * * * *
10590038 ATGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACAC
1 ATGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACAC
*
10590102 CATCGGCA------T--CTTGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10590116 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
10590181 ATCGGCACCTTGGTGCC-CTGG
66 ATCGGCACCTTGGTGCCTC-GG
* *
10590202 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
*
10590266 CATCGGCACCTTGGTGTCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* * *
10590288 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGCATGTGCGGGAGCCTCGGACAC
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGATGTGCGGGAGCATCGGACAC
10590352 CATCGGCACCTTGGTGCCTCGG
65 CATCGGCACCTTGGTGCCTCGG
* *
10590374 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGG
10590434 GCTAAAAATA
Statistics
Matches: 938, Mismatches: 107, Indels: 78
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.00
78 64 0.07
80 1 0.00
84 1 0.00
85 21 0.02
86 823 0.88
87 25 0.03
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (86 bp):
ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGATGTGCGGGAGCATCGGACACC
ATCGGCACCTTGGTGCCTCGG
Found at i:10590120 original size:35 final size:35
Alignment explanation
Indices: 10590075--10590150 Score: 107
Period size: 35 Copynumber: 2.2 Consensus size: 35
10590065 CACCATGGTG
* * *
10590075 CCTTCGATGTGCCGGTGCCTCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
* *
10590110 TCTTGGATGTGCGGGAGCATCGGACACCATCGGCA
1 CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
10590145 CCTTGG
1 CCTTGG
10590151 TGCCTTGGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (35 bp):
CCTTGGATGTGCCGGAGCATCGGACACCATCGGCA
Found at i:10597708 original size:3 final size:3
Alignment explanation
Indices: 10597700--10597729 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10597690 TTCTAAGCAA
10597700 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10597730 TTTTAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10597820 original size:14 final size:14
Alignment explanation
Indices: 10597801--10597829 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
10597791 AATAATAATT
10597801 TATTATTATTACTA
1 TATTATTATTACTA
10597815 TATTATTATTACTA
1 TATTATTATTACTA
10597829 T
1 T
10597830 TAGTAACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTATTACTA
Found at i:10598263 original size:129 final size:132
Alignment explanation
Indices: 10598129--10598416 Score: 377
Period size: 129 Copynumber: 2.2 Consensus size: 132
10598119 GCCGATGGTG
* * *
10598129 GTGCGGGACCGTCGGGAAGCATCGGCCACCTTGGTGCCTAGGATGTGCAAGAGCATCG-GACACC
1 GTGCGGGACCATCGGG-AGCATCGGCCACCTTGGTGCCTACGATGTGCAAGAGCATCGAAACACC
*
10598193 ATCGGCTACT-AGGCCGATGGTGGTGCGCGACCATC-GGG-AACCATCGGCACCTTGGTGACTCG
65 ATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGGAAACCATCGGCACCTTGGTGACTCG
10598255 GAT
130 GAT
* * * **
10598258 GTGCGGGGACCATCGGGAGTATCTGCCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAAACACC
1 GTGC-GGGACCATCGGGAGCATCGGCCACCTTGGTGCCTACGATGTGCAAGAGCATCGAAACACC
* * *
10598323 ATCGGCAACTAAGGCCGATGGTGGTGCGGGACCATCTGGGGAAAGCATCGGCACCTTGGTGCCTC
65 ATCGGCAACTAAGGCCGATGGTGGTGCGCGACCATC-GGGGAAACCATCGGCACCTTGGTGACTC
10598388 GGAT
129 GGAT
* * *
10598392 GTGCGAGAGCATCGGGCACCATCGG
1 GTGCGGGACCATCGGG-AGCATCGG
10598417 GCAAACAAGG
Statistics
Matches: 135, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
129 39 0.29
130 25 0.19
131 24 0.18
133 13 0.10
134 34 0.25
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.18
Consensus pattern (132 bp):
GTGCGGGACCATCGGGAGCATCGGCCACCTTGGTGCCTACGATGTGCAAGAGCATCGAAACACCA
TCGGCAACTAAGGCCGATGGTGGTGCGCGACCATCGGGGAAACCATCGGCACCTTGGTGACTCGG
AT
Found at i:10598272 original size:86 final size:85
Alignment explanation
Indices: 10597989--10598273 Score: 317
Period size: 85 Copynumber: 3.3 Consensus size: 85
10597979 GAGCTCCGTC
* * *
10597989 GGTGCC-CTGGATGTGCTGGATCATCGGACACCATCGGCAACTTGGGCCGATGGAT-GTGCGGGA
1 GGTGCCTC-GGATGTGCGGGAGCATCGGACACCATCGGCAAC-TAGGCCGATGG-TGGTGCGGGA
* * *
10598052 CCATCAGGAGGTATCGGCACCTT
63 CCATCGGGAAGCATCGGCACCTT
* * *
10598075 GGTGCCTTC-GATG-GGGGGAGCGTCGAACACCATCGGCAACTCAGGCCGATGGTGGTGCGGGAC
1 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACT-AGGCCGATGGTGGTGCGGGAC
*
10598138 CGTCGGGAAGCATCGGCCACCTT
64 CATCGGGAAGCATCGG-CACCTT
* ** * *
10598161 GGTGCCTAGGATGTGCAAGAGCATCGGACACCATCGGCTACTAGGCCGATGGTGGTGCGCGACCA
1 GGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCAACTAGGCCGATGGTGGTGCGGGACCA
*
10598226 TCGGGAACCATCGGCACCTT
66 TCGGGAAGCATCGGCACCTT
* *
10598246 GGTGACTCGGATGTGCGGGGACCATCGG
1 GGTGCCTCGGATGTGC-GGGAGCATCGG
10598274 GAGTATCTGC
Statistics
Matches: 166, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
84 2 0.01
85 73 0.44
86 68 0.41
87 22 0.13
88 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.36, T:0.18
Consensus pattern (85 bp):
GGTGCCTCGGATGTGCGGGAGCATCGGACACCATCGGCAACTAGGCCGATGGTGGTGCGGGACCA
TCGGGAAGCATCGGCACCTT
Found at i:10598273 original size:44 final size:43
Alignment explanation
Indices: 10598129--10598416 Score: 146
Period size: 44 Copynumber: 6.6 Consensus size: 43
10598119 GCCGATGGTG
* * * *
10598129 GTGCGGGACCGTCGGGAAGCATCGGCCACCTTGGTGCCTAGGAT
1 GTGCGGGACCATCGGGAACCATCGG-CACCTTGGTGACTCGGAT
** * * *
10598173 GTGCAAGAGCATC-GGACACCATCGGCTA-CTAGGCCGA-T-GG-T
1 GTGCGGGACCATCGGGA-ACCATCGGC-ACCTTGG-TGACTCGGAT
*
10598214 GGTGCGCGACCATCGGGAACCATCGGCACCTTGGTGACTCGGAT
1 -GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGACTCGGAT
** * *
10598258 GTGCGGGGACCATCGGG-AGTATCTGCCACCTTGGTGCCTTC-GAT
1 GTGC-GGGACCATCGGGAACCATC-GGCACCTTGGTGAC-TCGGAT
* ** * * *
10598302 GTGCGGGAGCATCGAAACACCATCGGCAACTAAGGCCGA-T-GG-T
1 GTGCGGGACCATCGGGA-ACCATCGGCACCT-TGG-TGACTCGGAT
* *
10598345 GGTGCGGGACCATCTGGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
1 -GTGCGGGACCATC--GGG-AACCATCGGCACCTTGGTGACTCGGAT
* * *
10598392 GTGCGAGAGCATCGGGCACCATCGG
1 GTGCGGGACCATCGGGAACCATCGG
10598417 GCAAACAAGG
Statistics
Matches: 180, Mismatches: 40, Indels: 49
0.67 0.15 0.18
Matches are distributed among these distances:
41 4 0.02
42 26 0.14
43 39 0.22
44 72 0.40
45 11 0.06
46 26 0.14
47 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GTGCGGGACCATCGGGAACCATCGGCACCTTGGTGACTCGGAT
Found at i:10598356 original size:87 final size:84
Alignment explanation
Indices: 10598258--10598658 Score: 450
Period size: 87 Copynumber: 4.6 Consensus size: 84
10598248 TGACTCGGAT
* *
10598258 GTGCGGGGACCATCGGGAGTATCTGCCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAAACACC
1 GTGC-GGGACCATCGGGAGTATC-GGCACCTTGGTGCCTTCGATGTGCGGGAGCATCG-GACACC
10598323 ATCGGCAACTAAGGCCGATGGTG
63 ATCGGCAAC-AAGGCCGATGGTG
* * *
10598346 GTGCGGGACCATCTGGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCA
1 GTGCGGGACCATC--GGG--AGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACA
10598410 CCATCGGGCAAACAAGGCCGATGGTG
61 CCATC-GGC-AACAAGGCCGATGGTG
** * *
10598436 GTG-GGGACCATCGAAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGAGGGCATCGGACACC
1 GTGCGGGACCATCG--GGAGTATCGGCACCTTGGTGCCTTCGATGTGCGG-GAGCATCGGACACC
*
10598500 ATCGGCAACTAGGCCGATGGTG
63 ATCGGCAACAAGGCCGATGGTG
* * * * *
10598522 GTACGAG-CCATCGGGATCAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCAA
1 GTGCGGGACCATCGGG---AGTATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGAC-A
10598585 CCATCGGCAACAAGGCCGATGGTG
61 CCATCGGCAACAAGGCCGATGGTG
*
10598609 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGG
1 GTGCGGGACCATCGGG-AGTATCGGCACCTTGGTGCCTTCGATGTGCGGG
10598659 GGANNNNNNN
Statistics
Matches: 265, Mismatches: 29, Indels: 40
0.79 0.09 0.12
Matches are distributed among these distances:
86 61 0.23
87 98 0.37
88 29 0.11
89 21 0.08
90 48 0.18
91 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.36, T:0.17
Consensus pattern (84 bp):
GTGCGGGACCATCGGGAGTATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCATC
GGCAACAAGGCCGATGGTG
Found at i:10598619 original size:174 final size:175
Alignment explanation
Indices: 10598262--10598658 Score: 583
Period size: 173 Copynumber: 2.3 Consensus size: 175
10598252 TCGGATGTGC
** * *
10598262 GGGGACCATCG-GGAGTATCTGCCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAAACACCATC
1 GGGGACCATCGAAAAGTATC-GGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGAAACACCATC
* *
10598326 GGCAACTAAGGCCGATGGTGGTGCGGGACCATCTGGGGAAAGCATCGGCACCTTGGTGCCTCGGA
65 GGCAACTAAGGCCGATGGTGGTACGAGACCATC-GGGGAAAGCATCGGCACCTTGGTGCCTCGGA
10598391 TGTGCGAGAGCATCGGGCACCATCGGGCAAACAAGGCCGATGGTGGT
129 TGTGCGAGAGCATCGGGCACCATCGGGCAAACAAGGCCGATGGTGGT
* *
10598438 GGGGACCATCGAAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGAGGGCATCG-GACACCAT
1 GGGGACCATCG-AAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGG-GAGCATCGAAACACCAT
*
10598502 CGGCAACT-AGGCCGATGGTGGTACGAG-CCATC-GGGATCAGCATCGGCACCTTGGTGCCTCGG
64 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGGA-AAGCATCGGCACCTTGGTGCCTCGG
10598564 ATGTGCGAGAGCATCGGGCAACCATC-GGC-AACAAGGCCGATGGTGGT
128 ATGTGCGAGAGCATCGGGC-ACCATCGGGCAAACAAGGCCGATGGTGGT
**
10598611 GCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGG
1 G-GGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGG
10598659 GGANNNNNNN
Statistics
Matches: 204, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
172 1 0.00
173 56 0.27
174 56 0.27
175 11 0.05
176 28 0.14
177 39 0.19
178 13 0.06
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.17
Consensus pattern (175 bp):
GGGGACCATCGAAAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGAGCATCGAAACACCATCG
GCAACTAAGGCCGATGGTGGTACGAGACCATCGGGGAAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGGCAAACAAGGCCGATGGTGGT
Found at i:10599529 original size:3 final size:3
Alignment explanation
Indices: 10599521--10599555 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10599511 TCTAAGCAAA
10599521 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10599556 AAATTTGATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10599647 original size:14 final size:15
Alignment explanation
Indices: 10599624--10599657 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
10599614 ATAATAATAA
10599624 TATTATTATTATTAC
1 TATTATTATTATTAC
10599639 TATTA-TATTATTAC
1 TATTATTATTATTAC
10599653 TATTA
1 TATTA
10599658 GTAACTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATTATTATTAC
Found at i:10599942 original size:43 final size:43
Alignment explanation
Indices: 10599820--10600716 Score: 422
Period size: 43 Copynumber: 20.9 Consensus size: 43
10599810 GAGCTCCGTC
* * * * *
10599820 GGTGCCCTGGATGTGCTGGATCATCGGACACCATCGGCAACTT
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* ***
10599863 GG-GCCGATGGATGTGCGGGACCATCAGGA-GGTATCGGCACCTT
1 GGTGCC-ATCGATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * * *
10599906 GGTGCCTTCGATGTGCGGGAGCGTCGAACACCATCGGCAACTC
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10599949 AG-GCCGAT-GGTGGTGCGGGACCGTCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* ** *
10599992 GGTGCC-TAGGATGTGCAAGAGCATCGGACACCATCGGCTA-CTT
1 GGTGCCAT-CGATGTGCGGGACCATCGGACACCATCGGC-ACCTT
* * * *
10600035 AG-GCCGAT-GGTGGTGCGCGACCATCGGGA-ACCATCGACACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
** *
10600078 GGTGCC-TCGGATGTGCGGGACCATCGGGA-AGTATCTGCACCTT
1 GGTGCCATC-GATGTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * *
10600121 GGTGCCTTCGATGTGCGGGAGCATCGAACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * *
10600164 AG-GCCGAT-GGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10600208 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * ** *
10600251 AG-GCCGAT-GGTGGTGCGGGACCATCGAAAAGTATCGGCACCAT
1 GGTGCC-ATCGAT-GTGCGGGACCATCGGACACCATCGGCACCTT
* ** * *
10600294 GGTGCCTTCGATGTGCGGGGGCATCGGACA-CATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10600336 AG-GCCGAT-GGTGGTACGAGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * * **
10600379 GGTGCC-TCGGATGTGCGAGAGCATCGGGCACCATCGGCAACAA
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * ** *
10600422 AG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGTATCGGCACCCT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * *
10600465 GGTGCCTTCGATGTGCGGGACCATCGGACACCATCGGCAACTA
1 GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
* * *
10600508 AG-GCCGATAG-TGGTGCGGGACCATCGGGA-AGCATCGGCACCTT
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* *
10600551 GGTGCC-TCGAATGTGCGGGAGCATCGGACACCATCGGCACCTA
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGGCACCTT
* *
10600594 GGTGCC-TCGGATGTGCGGGAGCATCGGACACCATCGGCAACTT
1 GGTGCCATC-GATGTGCGGGACCATCGGACACCATCGGCACCTT
* * * * *
10600637 TG-GCCGAT-GGTGGTGCGGGACCATCGGGA-AGCATCGGGACCTA
1 GGTGCC-ATCGAT-GTGCGGGACCATC-GGACACCATCGGCACCTT
* * * *
10600680 GGTGCC-TTGCATGTGCGGGAGCATGGGACACCGTCGG
1 GGTGCCATCG-ATGTGCGGGACCATCGGACACCATCGG
10600717 GCCAAAAAAA
Statistics
Matches: 635, Mismatches: 155, Indels: 128
0.69 0.17 0.14
Matches are distributed among these distances:
41 5 0.01
42 82 0.13
43 458 0.72
44 85 0.13
45 5 0.01
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (43 bp):
GGTGCCATCGATGTGCGGGACCATCGGACACCATCGGCACCTT
Found at i:10600411 original size:171 final size:172
Alignment explanation
Indices: 10600090--10600589 Score: 858
Period size: 171 Copynumber: 2.9 Consensus size: 172
10600080 TGCCTCGGAT
* * *
10600090 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10600155 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCCTCGGAT
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTCGGAT
10600220 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
130 GTGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
** *
10600263 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACA-CAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10600327 CGGCAACTAAGGCCGATGGTGGTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
10600392 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
131 TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
* *
10600434 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
* *
10600499 CGGCAACTAAGGCCGATAGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGAATG
66 CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
* *
10600564 TGCGGGAGCATCGGACACCATCGGCA
131 TGCGAGAGCATCGGGCACCATCGGCA
10600590 CCTAGGTGCC
Statistics
Matches: 307, Mismatches: 19, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
171 126 0.41
172 126 0.41
173 55 0.18
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (172 bp):
GTGCGGGACCATCGGGAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCGATGGTGGTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTCGGATG
TGCGAGAGCATCGGGCACCATCGGCAACAAAGGCCGATGGTG
Found at i:10600613 original size:86 final size:85
Alignment explanation
Indices: 10600090--10600589 Score: 711
Period size: 86 Copynumber: 5.8 Consensus size: 85
10600080 TGCCTCGGAT
* * *
10600090 GTGCGGGACCATCGGGAAGTATCTGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGAACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10600155 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* *
10600176 GTGCGGGACCATCGGGAAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACC
1 GTGCGGGACCATCGGG-AAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACC
*
10600240 ATCGGCAACAAAGGCCGATGGTG
64 ATCGGCAACTAAGGCC-ATGGTG
** * * *
10600263 GTGCGGGACCATCGAAAAGTATCGGCACCATGGTGCCTTCGATGTGCGGGGGCATCGGACA-CAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
10600327 CGGCAACTAAGGCCGATGGTG
66 CGGCAACTAAGGCC-ATGGTG
* * * *
10600348 GTACGAGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGGATGTGCGAGAGCATCGGGCACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTC-GATGTGCGGGAGCATCGGACACCA
*
10600412 TCGGCAACAAAGGCCGATGGTG
65 TCGGCAACTAAGGCC-ATGGTG
* * *
10600434 GTGCGGGACCATCGGGAAGTATCGGCACCCTGGTGCCTTCGATGTGCGGGACCATCGGACACCAT
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
*
10600499 CGGCAACTAAGGCCGATAGTG
66 CGGCAACTAAGGCC-ATGGTG
10600520 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCC-TCGAATGTGCGGGAGCATCGGACACCA
1 GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCG-ATGTGCGGGAGCATCGGACACCA
10600584 TCGGCA
65 TCGGCA
10600590 CCTAGGTGCC
Statistics
Matches: 371, Mismatches: 36, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
84 2 0.01
85 75 0.20
86 215 0.58
87 79 0.21
ACGTcount: A:0.22, C:0.27, G:0.35, T:0.17
Consensus pattern (85 bp):
GTGCGGGACCATCGGGAAGCATCGGCACCTTGGTGCCTTCGATGTGCGGGAGCATCGGACACCAT
CGGCAACTAAGGCCATGGTG
Found at i:10601416 original size:43 final size:43
Alignment explanation
Indices: 10601355--10602438 Score: 908
Period size: 43 Copynumber: 25.4 Consensus size: 43
10601345 TGTTCCAGAC
*
10601355 ATGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10601398 ATGTGCGGGAGCCTCGGACACCATCGTCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10601441 ATGTGCGGGA-CCATCGGACACCACCGGCACCTTGGTGCCAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC-TCGG
* ** * *
10601484 TTGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* * *
10601527 ATGTGCGGGAGCATCGGACACCATAGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10601570 ATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGC-CTCGG
** *
10601613 -TGGTGCGGGA-CCATCGGGA-ATAATCGGCACCTTGGTGCGTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
**
10601656 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCTTGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * * **
10601699 ATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
* *
10601742 -TGGTGCGGGA-CCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * **
10601785 ATGTGCGAG-GCCATCGGGCACCATCGGTAACTAAG-GCCGAT-GG
1 ATGTGCGGGAGCC-TCGGACACCATCGGCACCTTGGTGCC--TCGG
** *
10601828 -TGGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10601871 ATGTGCGGGAGCATCGGACACCATCGGCAACTTAAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTT-GGTGCC--TCGG
** * * *
10601915 -TGGTTTGGGA-CGTCGGGA-AGCATCGGCACCTTGGTGCCTAGG
1 AT-GTGCGGGAGCCTC-GGACACCATCGGCACCTTGGTGCCTCGG
* * * * *
10601957 ATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCGAT-GG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC--TCGG
*
10602000 -TGGTGCGGGA-CCATCGGGA-ATCATCGGCACCTTGGTGCCTCGG
1 AT-GTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCCTCGG
** *
10602043 ATGTGCGGGA-CCATCGGGA-AGTATCGGCACCATGGTGCCTTC-G
1 ATGTGCGGGAGCC-TC-GGACACCATCGGCACCTTGGTGCC-TCGG
* * *
10602086 ATGTGCCGGTGCCTCGGACACCATCGGCA------T--CTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10602121 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10602164 ATGTGCGGGGGCATCGGACACCATCGGCACCTTGGTGCC-CTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTC-GG
* *
10602207 TTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10602250 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10602293 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGC
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
10602336 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
* *
10602379 ATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGG
1 ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
*
10602422 ATGTGCGGGAGCGTCGG
1 ATGTGCGGGAGCCTCGG
10602439 GCTAAAAATA
Statistics
Matches: 857, Mismatches: 115, Indels: 138
0.77 0.10 0.12
Matches are distributed among these distances:
34 1 0.00
35 28 0.03
37 1 0.00
41 2 0.00
42 46 0.05
43 726 0.85
44 53 0.06
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (43 bp):
ATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGG
Found at i:10601586 original size:129 final size:129
Alignment explanation
Indices: 10601356--10602438 Score: 1034
Period size: 129 Copynumber: 8.5 Consensus size: 129
10601346 GTTCCAGACA
* * *
10601356 TGTGCGAGAGCCTCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCA
* * * *
10601421 TCGTCACCTTGGTGCCTCGGATGTGCGGGACCATCGGACACCACCGGCACCTTGGTGCCATGGT
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGT
** *
10601485 TGTGCGACAGCATCGGACACCATCGGTACCTTGGTGCC-CTGGATGTGCGGGAGCATCGGACACC
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTC-GGATGTGCGGGAGCATCGGACACC
* * * * *
10601549 ATAGGCACCTTGGTGCCTTGGATGTGCGGCAGCATCGGACGCCTTCGGCACCTTAGGT-CGATGG
65 ATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCCATGG
10601613 T
129 T
* * ** * * *
10601614 GGTGCGGGACCATCGGGA-ATAATCGGCACCTTGGTGCGTCGGATGTGCGGGACCATCGGGA-AG
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATC-GGACAC
* * * * ** *
10601677 TATCGGCACCTTGGTGCCTTCGATGTGCGAGAGCATCGGACACCATCGGCAACTCAG-GCCGGTG
64 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-ATG
10601741 GT
128 GT
* * * * * *
10601743 GGTGCGGGACCATCGGGA-AGCATCGGCTCCTTGGTGCCTCGGATGTGCGAGG-CCATCGGGCAC
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCG-GGAGCATCGGACAC
* * ** * * ** * *
10601806 CATCGGTAACTAAG-GCCGATGG-TGGTGCGGGACCATCGGGA-AGTATCGGCACCATGGTGCCT
64 CATCGGCACCTTGGTGCC-TTGGAT-GTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCA
* *
10601868 TCGA
126 TGGT
* * ** *
10601872 TGTGCGGGAGCATCGGACACCATCGGCAACTTAAG-GCCGAT-GG-TGGTTTGGGA-CGTCGGGA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTT-GGTGCC--TCGGAT-GTGCGGGAGCATC-GGA
* * * * * *
10601933 -AGCATCGGCACCTTGGTGCCTAGGATGTGCGAGAGCATCGGACACCATCGGTAACTTAG-GCCG
61 CACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-
10601996 ATGGT
125 ATGGT
* * * * *
10602001 GGTGCGGGACCATCGGGA-ATCATCGGCACCTTGGTGCCTCGGATGTGCGGGACCATCGGGA-AG
1 TGTGCGGGAGCATC-GGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATC-GGACAC
* * * * * * *
10602064 TATCGGCACCATGGTGCCTTCGATGTGCCGGTGCCTCGGACACCATCGGCATCTT-G-G--A---
64 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGG
10602122 -
129 T
* *
10602122 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGGGCATCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCA
* * *
10602187 TCGGCACCTTGGTGCCCTGGTTGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCC-TCGGA
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGT
* * *
10602251 TGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGTCTCGGATGTGCGGGAGCCTCGGACACCA
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCA
* * * *
10602316 TCGGCACCTTGGTGCCTCGCATGTGCGGGAGCCTCGGACACCATCGGCACCTTGGTGCC-TCGGA
66 TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCAT-GGT
* *
10602380 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCGTCGG
1 TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGG
10602439 GCTAAAAATA
Statistics
Matches: 779, Mismatches: 135, Indels: 80
0.78 0.14 0.08
Matches are distributed among these distances:
120 6 0.01
121 94 0.12
122 1 0.00
123 1 0.00
125 1 0.00
127 1 0.00
128 29 0.04
129 612 0.79
130 33 0.04
131 1 0.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (129 bp):
TGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCATCGGACACCA
TCGGCACCTTGGTGCCTTGGATGTGCGGGAGCATCGGACACCATCGGCACCTTGGTGCCATGGT
Done.