Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 61 of 144
Found at i:12876980 original size:2 final size:2
Alignment explanation
Indices: 12876973--12877009 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
12876963 CTTTCAAATT
12876973 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12877010 GTTTTATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:12879541 original size:25 final size:25
Alignment explanation
Indices: 12879512--12879568 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
12879502 TTGATAATTG
12879512 GTTAATGTTTTATA-AATTTTTATTT
1 GTTAAT-TTTTATATAATTTTTATTT
*
12879537 GTTAATTTTTATATTATTTTTATTT
1 GTTAATTTTTATATAATTTTTATTT
12879562 -TT-ATTTT
1 GTTAATTTT
12879569 CATGATAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 5 0.17
24 9 0.30
25 16 0.53
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (25 bp):
GTTAATTTTTATATAATTTTTATTT
Found at i:12879561 original size:6 final size:6
Alignment explanation
Indices: 12879527--12879568 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
12879517 TGTTTTATAA
*
12879527 ATTTTT ATTTGTT AATTTTT A-TATT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTT-TT -ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
12879569 CATGATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
5 4 0.13
6 19 0.61
7 4 0.13
8 4 0.13
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:12879563 original size:17 final size:19
Alignment explanation
Indices: 12879531--12879565 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
12879521 TTATAAATTT
12879531 TTATTTGTTAATTTTTATA
1 TTATTTGTTAATTTTTATA
12879550 TTATTT-TT-ATTTTTAT
1 TTATTTGTTAATTTTTAT
12879566 TTTCATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (19 bp):
TTATTTGTTAATTTTTATA
Found at i:12887290 original size:51 final size:51
Alignment explanation
Indices: 12887217--12887402 Score: 255
Period size: 51 Copynumber: 3.6 Consensus size: 51
12887207 CTCGCATTTG
* ** * * * *
12887217 TTACTCACAATGACACAAAGTCATCGAACCCTTAATTCATCATGGATTCAT
1 TTACTCACGATGACACTTAGTCATCGAACCTTTAATTCGTAAAGGATTCAT
* *
12887268 TTACTCACGATGACACTTAGTCATCGGACCTTTAATTTGTAAAGGATTCAT
1 TTACTCACGATGACACTTAGTCATCGAACCTTTAATTCGTAAAGGATTCAT
* *
12887319 TTACTCATGATGACACTTAGTCATCGAACCTTTAATCCGTAAAGGATTCAT
1 TTACTCACGATGACACTTAGTCATCGAACCTTTAATTCGTAAAGGATTCAT
* *
12887370 TTACTCATGATAACACTTAGTCATCGAACCTTT
1 TTACTCACGATGACACTTAGTCATCGAACCTTT
12887403 TCGTTTATAA
Statistics
Matches: 121, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 121 1.00
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (51 bp):
TTACTCACGATGACACTTAGTCATCGAACCTTTAATTCGTAAAGGATTCAT
Found at i:12891878 original size:16 final size:16
Alignment explanation
Indices: 12891859--12891902 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
12891849 ACCAATTGAA
12891859 AACCAAGCCCAAAGTG
1 AACCAAGCCCAAAGTG
* *
12891875 AACCAAACCC-AATTG
1 AACCAAGCCCAAAGTG
12891890 AACCAAGCCCAAA
1 AACCAAGCCCAAA
12891903 CCCAAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.48, C:0.34, G:0.11, T:0.07
Consensus pattern (16 bp):
AACCAAGCCCAAAGTG
Found at i:12891893 original size:15 final size:15
Alignment explanation
Indices: 12891845--12891901 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
12891835 AACCTTTAAG
12891845 CCAAA-CCAATTGAAAA
1 CCAAACCCAATTG--AA
* *
12891861 CCAAGCCCAAAGTGAA
1 CCAAACCC-AATTGAA
12891877 CCAAACCCAATTGAA
1 CCAAACCCAATTGAA
*
12891892 CCAAGCCCAA
1 CCAAACCCAA
12891902 ACCCAAACCA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 15 0.44
16 13 0.38
17 2 0.06
18 4 0.12
ACGTcount: A:0.47, C:0.33, G:0.11, T:0.09
Consensus pattern (15 bp):
CCAAACCCAATTGAA
Found at i:12891948 original size:7 final size:7
Alignment explanation
Indices: 12891932--12892013 Score: 60
Period size: 7 Copynumber: 11.9 Consensus size: 7
12891922 TTGATCGATT
*
12891932 GTTGATC
1 GTTGACC
12891939 GTTGACC
1 GTTGACC
*
12891946 GTTGACA
1 GTTGACC
*
12891953 GTTGACA
1 GTTGACC
*
12891960 GTTAACC
1 GTTGACC
*
12891967 GTTGACA
1 GTTGACC
12891974 GTTGACC
1 GTTGACC
* *
12891981 ATTAACC
1 GTTGACC
*
12891988 TTTGACC
1 GTTGACC
12891995 G-TGA-C
1 GTTGACC
*
12892000 TTTGACCC
1 GTTGA-CC
12892008 GTTGAC
1 GTTGAC
12892014 TTTTTTTGAA
Statistics
Matches: 58, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
5 1 0.02
6 6 0.10
7 46 0.79
8 5 0.09
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (7 bp):
GTTGACC
Found at i:12891967 original size:21 final size:21
Alignment explanation
Indices: 12891943--12891993 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
12891933 TTGATCGTTG
12891943 ACCGTTGACAGTTGA-CAGTTA
1 ACCGTTGACAGTTGACCA-TTA
12891964 ACCGTTGACAGTTGACCATTA
1 ACCGTTGACAGTTGACCATTA
*
12891985 ACCTTTGAC
1 ACCGTTGAC
12891994 CGTGACTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (21 bp):
ACCGTTGACAGTTGACCATTA
Found at i:12893224 original size:6 final size:6
Alignment explanation
Indices: 12893207--12893239 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
12893197 TATAGACTTA
12893207 ATATTAT ATATTT ATATTT ATATTT ATATTT AT
1 ATATT-T ATATTT ATATTT ATATTT ATATTT AT
12893240 TTTTTAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
ATATTT
Found at i:12897041 original size:58 final size:58
Alignment explanation
Indices: 12896976--12897095 Score: 188
Period size: 58 Copynumber: 2.1 Consensus size: 58
12896966 ACCCATCAAC
* * *
12896976 AAACTAAACCCAAATATTTTTAAACCTAAATATAATTTCATTCTTCAAA-AACACTTAT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCT-AAATAACACTCAT
*
12897034 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTTATTCCTAAATAACACTCAT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT
12897092 AAAC
1 AAAC
12897096 AACTCCTTTT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
57 3 0.05
58 54 0.95
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (58 bp):
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTCAT
Found at i:12897336 original size:21 final size:21
Alignment explanation
Indices: 12897312--12897354 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
12897302 TGTTCGTTTA
12897312 TTTAACTTTTGTTGTGTTGTT
1 TTTAACTTTTGTTGTGTTGTT
** *
12897333 TTTATTTTTTGTTTTGTTGTT
1 TTTAACTTTTGTTGTGTTGTT
12897354 T
1 T
12897355 GGAATGGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.07, C:0.02, G:0.16, T:0.74
Consensus pattern (21 bp):
TTTAACTTTTGTTGTGTTGTT
Found at i:12902235 original size:20 final size:19
Alignment explanation
Indices: 12902210--12902314 Score: 70
Period size: 20 Copynumber: 5.3 Consensus size: 19
12902200 GGCCTGGAGC
12902210 TATTTTGACTTGTTTGAAAA
1 TATTTTGACTTGTTT-AAAA
** *
12902230 TATTTTGAAGTG-TTAATA
1 TATTTTGACTTGTTTAAAA
* * *
12902248 TGATTTTGACTTAATTCAAAT
1 T-ATTTTGACTT-GTTTAAAA
*
12902269 TATTTTGACATGTTTAAAA
1 TATTTTGACTTGTTTAAAA
*
12902288 TCATTTTAACTTGATTTTAAAA
1 T-ATTTTGACTTG--TTTAAAA
12902310 T-TTTT
1 TATTTT
12902315 TTCGAACTTT
Statistics
Matches: 64, Mismatches: 15, Indels: 12
0.70 0.16 0.13
Matches are distributed among these distances:
18 4 0.06
19 16 0.25
20 32 0.50
21 4 0.06
22 8 0.12
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTTTGACTTGTTTAAAA
Found at i:12902651 original size:18 final size:18
Alignment explanation
Indices: 12902628--12902667 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
12902618 CTATTTTTTG
12902628 GTAAAAATGAACAATTTA
1 GTAAAAATGAACAATTTA
* *
12902646 GTAAAAATGAACCATTTG
1 GTAAAAATGAACAATTTA
12902664 GTAA
1 GTAA
12902668 CTATTTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.07, G:0.15, T:0.28
Consensus pattern (18 bp):
GTAAAAATGAACAATTTA
Found at i:12910276 original size:27 final size:27
Alignment explanation
Indices: 12910246--12910305 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
12910236 TGTTCCCACT
* *
12910246 TTTAGTGGTTCATGATTATATCCTTCA
1 TTTACTGGTTAATGATTATATCCTTCA
**
12910273 TTTACTTTTTAATGATTATATCCTTCA
1 TTTACTGGTTAATGATTATATCCTTCA
12910300 TTTACT
1 TTTACT
12910306 TTATGTTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.53
Consensus pattern (27 bp):
TTTACTGGTTAATGATTATATCCTTCA
Found at i:12915016 original size:10 final size:10
Alignment explanation
Indices: 12915001--12915035 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
12914991 GTGCCCAAAC
12915001 CTTTTTCTTT
1 CTTTTTCTTT
12915011 C-TTTT-TTT
1 CTTTTTCTTT
12915019 CTTTTTCTTT
1 CTTTTTCTTT
12915029 CTTTTTC
1 CTTTTTC
12915036 CCTTGCCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 4 0.17
9 8 0.35
10 11 0.48
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (10 bp):
CTTTTTCTTT
Found at i:12915576 original size:10 final size:10
Alignment explanation
Indices: 12915563--12915607 Score: 72
Period size: 10 Copynumber: 4.5 Consensus size: 10
12915553 AGTCAAACCA
12915563 TTGACCGGCG
1 TTGACCGGCG
12915573 TTGACCGGCG
1 TTGACCGGCG
*
12915583 TTGACCGGCA
1 TTGACCGGCG
*
12915593 TTGACCAGCG
1 TTGACCGGCG
12915603 TTGAC
1 TTGAC
12915608 TGACCGTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.16, C:0.29, G:0.33, T:0.22
Consensus pattern (10 bp):
TTGACCGGCG
Found at i:12915643 original size:20 final size:20
Alignment explanation
Indices: 12915620--12915754 Score: 96
Period size: 20 Copynumber: 6.8 Consensus size: 20
12915610 ACCGTTAACT
*
12915620 TTGACCATTGACTTTAATCG
1 TTGACCATTGACTTTGATCG
*
12915640 TTGACCATTGACTTTGATAG
1 TTGACCATTGACTTTGATCG
** *
12915660 TTGACTTTTGACTTTGACCG
1 TTGACCATTGACTTTGATCG
* * *
12915680 TTGACCACTGATCGTTGA-CT
1 TTGACCATTGA-CTTTGATCG
* *
12915700 TTGACCGTTGACTGTTGA-CT
1 TTGACCATTGACT-TTGATCG
* * *
12915720 TTGACAATTGACCGTTGA-CT
1 TTGACCATTGA-CTTTGATCG
*
12915740 TTGACCGTTGACTTT
1 TTGACCATTGACTTT
12915755 TTCAAAAAAC
Statistics
Matches: 92, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
19 4 0.04
20 82 0.89
21 6 0.07
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (20 bp):
TTGACCATTGACTTTGATCG
Found at i:12915683 original size:7 final size:7
Alignment explanation
Indices: 12915673--12915751 Score: 56
Period size: 7 Copynumber: 11.7 Consensus size: 7
12915663 ACTTTTGACT
12915673 TTGACCG
1 TTGACCG
*
12915680 TTGACCA
1 TTGACCG
* *
12915687 CTGATCG
1 TTGACCG
*
12915694 TTGA-CT
1 TTGACCG
12915700 TTGACCG
1 TTGACCG
*
12915707 TTGACTG
1 TTGACCG
*
12915714 TTGA-CT
1 TTGACCG
**
12915720 TTGACAA
1 TTGACCG
12915727 TTGACCG
1 TTGACCG
*
12915734 TTGA-CT
1 TTGACCG
12915740 TTGACCG
1 TTGACCG
12915747 TTGAC
1 TTGAC
12915752 TTTTTCAAAA
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
6 14 0.26
7 39 0.74
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (7 bp):
TTGACCG
Found at i:12915683 original size:13 final size:13
Alignment explanation
Indices: 12915608--12915754 Score: 102
Period size: 13 Copynumber: 11.1 Consensus size: 13
12915598 CAGCGTTGAC
*
12915608 TGACCGTTAACTT
1 TGACCGTTGACTT
*
12915621 TGACCATTGACTT
1 TGACCGTTGACTT
* * *
12915634 TAATCGTTGACCAT
1 TGACCGTTGA-CTT
*
12915648 TGA-CTTTGA-TAGT
1 TGACCGTTGACT--T
**
12915661 TGACTTTTGACTT
1 TGACCGTTGACTT
**
12915674 TGACCGTTGACCAC
1 TGACCGTTGA-CTT
*
12915688 TGATCGTTGACTT
1 TGACCGTTGACTT
12915701 TGACCGTTGACTGT
1 TGACCGTTGACT-T
* *
12915715 TGA-CTTTGACAAT
1 TGACCGTTGAC-TT
12915728 TGACCGTTGACTT
1 TGACCGTTGACTT
12915741 TGACCGTTGACTT
1 TGACCGTTGACTT
12915754 T
1 T
12915755 TTCAAAAAAC
Statistics
Matches: 103, Mismatches: 22, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
13 73 0.71
14 29 0.28
15 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (13 bp):
TGACCGTTGACTT
Found at i:12915683 original size:27 final size:28
Alignment explanation
Indices: 12915653--12915739 Score: 85
Period size: 27 Copynumber: 3.2 Consensus size: 28
12915643 ACCATTGACT
12915653 TTGA-TAGTTGACTTTTGACTTTGACCG
1 TTGACTAGTTGACTTTTGACTTTGACCG
* * *
12915680 TTGACCA-CTGA-TCGTTGACTTTGACCG
1 TTGACTAGTTGACT-TTTGACTTTGACCG
*
12915707 TTGACT-GTTGAC-TTTGACAATTGACCG
1 TTGACTAGTTGACTTTTGAC-TTTGACCG
12915734 TTGACT
1 TTGACT
12915740 TTGACCGTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
26 6 0.12
27 41 0.85
28 1 0.02
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.39
Consensus pattern (28 bp):
TTGACTAGTTGACTTTTGACTTTGACCG
Found at i:12915704 original size:40 final size:39
Alignment explanation
Indices: 12915606--12915754 Score: 140
Period size: 40 Copynumber: 3.7 Consensus size: 39
12915596 ACCAGCGTTG
* * *
12915606 ACTGACCGTTAACTTTGACCATTGACTTTAATCGTTGACC
1 ACTGACCGTTGACTTTGACCGTTGACTTTGA-CGTTGACC
* * **
12915646 ATTGA-CTTTGA-TAGTTGACTTTTGACTTTGACCGTTGACC
1 ACTGACCGTTGACT--TTGACCGTTGACTTTGA-CGTTGACC
* * *
12915686 ACTGATCGTTGACTTTGACCGTTGACTGTTGACTTTGACA
1 ACTGACCGTTGACTTTGACCGTTGACT-TTGACGTTGACC
*
12915726 ATTGACCGTTGACTTTGACCGTTGACTTT
1 ACTGACCGTTGACTTTGACCGTTGACTTT
12915755 TTCAAAAAAC
Statistics
Matches: 89, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 6 0.07
40 72 0.81
41 9 0.10
42 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (39 bp):
ACTGACCGTTGACTTTGACCGTTGACTTTGACGTTGACC
Found at i:12915750 original size:27 final size:25
Alignment explanation
Indices: 12915667--12915751 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 25
12915657 TAGTTGACTT
* **
12915667 TTGACTTTGACCGTTGACCACTGATCG
1 TTGACATTGACCGTTGA-CTTTGA-CG
* *
12915694 TTGACTTTGACCGTTGACTGTTGACT
1 TTGACATTGACCGTTGACT-TTGACG
12915720 TTGACAATTGACCGTTGACTTTGACCG
1 TTGAC-ATTGACCGTTGACTTTGA-CG
12915747 TTGAC
1 TTGAC
12915752 TTTTTCAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (25 bp):
TTGACATTGACCGTTGACTTTGACG
Found at i:12916776 original size:3 final size:3
Alignment explanation
Indices: 12916764--12916793 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
12916754 TATTCTATTC
12916764 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
12916794 TTGGGATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:12922302 original size:3 final size:3
Alignment explanation
Indices: 12922290--12922319 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
12922280 TATTCTATTC
12922290 TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
12922320 TTGGGATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:12923544 original size:21 final size:21
Alignment explanation
Indices: 12923514--12923553 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12923504 TGATTTGTCA
* *
12923514 TGTATTGTCTCGGGATATGGT
1 TGTATCGTCTCGAGATATGGT
12923535 TGTATCGTCTCGAGATATG
1 TGTATCGTCTCGAGATATG
12923554 CAAGTTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.12, G:0.30, T:0.40
Consensus pattern (21 bp):
TGTATCGTCTCGAGATATGGT
Found at i:12926015 original size:6 final size:6
Alignment explanation
Indices: 12926004--12926029 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
12925994 GTTCAACTAC
12926004 AATTAT AATTAT AATTAT AATTAT AA
1 AATTAT AATTAT AATTAT AATTAT AA
12926030 ATAATAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (6 bp):
AATTAT
Found at i:12932545 original size:19 final size:20
Alignment explanation
Indices: 12932499--12932563 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
12932489 TTTTATAATT
12932499 TTTTTAAAAATATTAATTTTGAAA
1 TTTTT-AAAA-ATT-ATTTTG-AA
*
12932523 TTTTTATAAA-TATTTTGAA
1 TTTTTAAAAATTATTTTGAA
12932542 -TTTTAAAAATTATATTTGAA
1 TTTTTAAAAATTAT-TTTGAA
12932562 TT
1 TT
12932564 ATTTTGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 8 0.22
19 5 0.14
20 12 0.33
21 2 0.06
22 1 0.03
23 3 0.08
24 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAATTATTTTGAA
Found at i:12936773 original size:12 final size:12
Alignment explanation
Indices: 12936756--12936783 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
12936746 GATCAAGATC
12936756 AAAGTCTATTTA
1 AAAGTCTATTTA
12936768 AAAGTCTATTTA
1 AAAGTCTATTTA
12936780 AAAG
1 AAAG
12936784 ACAAAAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (12 bp):
AAAGTCTATTTA
Found at i:12946160 original size:22 final size:21
Alignment explanation
Indices: 12946100--12946173 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
12946090 GGAACTTTTA
*
12946100 GTATCGGTAGAACGTT-AAGAT
1 GTATCGGTAG-ACATTAAAGAT
*
12946121 GT-TCCGGTAGACATTAAAGTT
1 GTAT-CGGTAGACATTAAAGAT
12946142 GTATCGGTAGATCATTAAAGA-
1 GTATCGGTAGA-CATTAAAGAT
*
12946163 ATATCGGTAGA
1 GTATCGGTAGA
12946174 ATCCTGTAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.11
21 31 0.69
22 9 0.20
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.30
Consensus pattern (21 bp):
GTATCGGTAGACATTAAAGAT
Found at i:12948791 original size:19 final size:17
Alignment explanation
Indices: 12948731--12948797 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 17
12948721 TTTTAAAAAA
*
12948731 TTAATAAAAGTAAAAATT
1 TTAA-AAAAATAAAAATT
* *
12948749 TTAAAATATATAAAAATG
1 TTAAAA-AAATAAAAATT
12948767 TTAAAAAAATAACAAATT
1 TTAAAAAAATAA-AAATT
*
12948785 TTCAAAATAATAA
1 TT-AAAAAAATAA
12948798 TTTTGAGGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
17 7 0.17
18 24 0.60
19 9 0.22
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (17 bp):
TTAAAAAAATAAAAATT
Found at i:12949335 original size:24 final size:23
Alignment explanation
Indices: 12949292--12949336 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
12949282 GCCCTTCAAA
* *
12949292 CACTTGAAAATATTTGACAATTG
1 CACTTGAAAATATCTAACAATTG
12949315 CACTTGGAAAATATCTAACAAT
1 CACTT-GAAAATATCTAACAAT
12949337 AATGCCCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (23 bp):
CACTTGAAAATATCTAACAATTG
Found at i:12951523 original size:18 final size:17
Alignment explanation
Indices: 12951497--12951535 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
12951487 CAATCAAAAT
12951497 ATATATTATAATAATATA
1 ATATATTATAATAAT-TA
*
12951515 ATATTTTATAATAATTA
1 ATATATTATAATAATTA
12951532 ATAT
1 ATAT
12951536 CATATACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATATATTATAATAATTA
Found at i:12951786 original size:23 final size:23
Alignment explanation
Indices: 12951694--12951774 Score: 67
Period size: 23 Copynumber: 3.3 Consensus size: 23
12951684 TTTTATACTA
*
12951694 TAAAATATTTATTATTAAATA-T-T
1 TAAAATA-TTAATA-TAAATATTGT
* *
12951717 TATAAATTTTAATATATATTTATTGT
1 TA-AAATATTAATATA-A-ATATTGT
12951743 TAAAATATTAATATAAATATTGT
1 TAAAATATTAATATAAATATTGT
12951766 TAATAATAT
1 TAA-AATAT
12951775 ATTAAGAATA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
22 2 0.04
23 17 0.36
24 12 0.26
25 13 0.28
26 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (23 bp):
TAAAATATTAATATAAATATTGT
Found at i:12952386 original size:55 final size:55
Alignment explanation
Indices: 12952302--12952414 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
12952292 GTTTATCATT
12952302 ATCGGATTTGAATCTCAAACCGAACGAAAAAGCTCAAAACGAAAAAATTATAAGG
1 ATCGGATTTGAATCTCAAACCGAACGAAAAAGCTCAAAACGAAAAAATTATAAGG
12952357 ATCGGATTTGAATCTCAAACCGAACGAAAAAGCTCAAAACGAAAAAATTATAAGG
1 ATCGGATTTGAATCTCAAACCGAACGAAAAAGCTCAAAACGAAAAAATTATAAGG
12952412 ATC
1 ATC
12952415 ACTTGTATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.19
Consensus pattern (55 bp):
ATCGGATTTGAATCTCAAACCGAACGAAAAAGCTCAAAACGAAAAAATTATAAGG
Found at i:12959669 original size:29 final size:29
Alignment explanation
Indices: 12959605--12959669 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
12959595 GTGTACTAGG
* *
12959605 CCATGTGGTAGACCGTGTGCACCACACAA
1 CCATGTGGTAGACCATGTGAACCACACAA
* * * *
12959634 CCGTGTGGTAGGCCATGTGAAGCACACAT
1 CCATGTGGTAGACCATGTGAACCACACAA
12959663 CCATGTG
1 CCATGTG
12959670 AAATTACACG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (29 bp):
CCATGTGGTAGACCATGTGAACCACACAA
Found at i:12969170 original size:12 final size:12
Alignment explanation
Indices: 12969153--12969177 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12969143 ACTTAATGTG
12969153 TTTGATGTGTAA
1 TTTGATGTGTAA
12969165 TTTGATGTGTAA
1 TTTGATGTGTAA
12969177 T
1 T
12969178 GTCTTTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (12 bp):
TTTGATGTGTAA
Found at i:12970041 original size:3 final size:3
Alignment explanation
Indices: 12970033--12970064 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
12970023 GGCCCAAATT
12970033 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
12970065 TATTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:12970069 original size:3 final size:3
Alignment explanation
Indices: 12970063--12970095 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
12970053 CATCATCATC
12970063 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
12970096 TTAGGGCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:12970812 original size:145 final size:141
Alignment explanation
Indices: 12970531--12970975 Score: 590
Period size: 144 Copynumber: 3.1 Consensus size: 141
12970521 ATTTTTGATT
* * * * * * *
12970531 TTTTTAAAAAAGAGAAAGTTAAAATTTTTAAAAAT-AATTGTTTTTTTAGTCATTTTAAAGGAAA
1 TTTTTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAATATGTTTTTAGTCATTTTAAAAGAAA
* * *
12970595 AGTTTAATTTTTTAAACAAAATTTTGATTTTTTATCTTTTTCGAAATAAAAGCTTTGATCTTTAA
66 AGTTTAAATTTTTAAAC-AAATTTTGATTTTTTAACTATTTCGAAATAAAAGCTTTGATCTTTAA
12970660 GAAAAGTAGTGA
130 GAAAAGTAGTGA
12970672 TTTTTAAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTAAAAGA
1 TTTTT-AAAAAAAAGAAAGTTTAGATTTTTAAAAAT-AAAATATGTTTTTAGTCATTTTAAAAGA
* ** * *
12970737 AAAGTTTAAATTTTTAAATAAATTTTTGACGATTTTAACTATTTCAAAATAAAAGTTTTGATCTT
64 AAAGTTTAAATTTTTAAACAAA-TTTTGA-TTTTTTAACTATTTCGAAATAAAAGCTTTGATCTT
*
12970802 TATGAAAAGTAGTGA
127 TAAGAAAAGTAGTGA
* *
12970817 TTTTTTAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAATATGTGTTTTAGTCATTTTAAAGAAA
1 TTTTTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAATATGT-TTTTAGTCATTTTAAA-AGA
* * * *
12970882 AAAATTTAAAATTTTAAACAAATTTTGATTTTTTTAATTATTTTGAAATAAAAGCTTTGATCTTT
64 AAAGTTTAAATTTTTAAACAAATTTTGA-TTTTTTAACTATTTCGAAATAAAAGCTTTGATCTTT
12970947 AAGAAAAGTAGTGA
128 AAGAAAAGTAGTGA
*
12970961 --TTTAAAGAAAAGAAA
1 TTTTTAAAAAAAAGAAA
12970976 ATTGTTGATT
Statistics
Matches: 266, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
141 5 0.02
142 40 0.15
143 12 0.05
144 140 0.53
145 69 0.26
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.42
Consensus pattern (141 bp):
TTTTTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAATATGTTTTTAGTCATTTTAAAAGAAA
AGTTTAAATTTTTAAACAAATTTTGATTTTTTAACTATTTCGAAATAAAAGCTTTGATCTTTAAG
AAAAGTAGTGA
Found at i:12981448 original size:20 final size:22
Alignment explanation
Indices: 12981418--12981458 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
12981408 CAACTAACAA
*
12981418 AGAGAAAAAGATG-AATAAGTG
1 AGAGAAAAAGAAGAAATAAGTG
12981439 AGAG-AAAAGAAGAAATAAGT
1 AGAGAAAAAGAAGAAATAAGT
12981459 TTATCTGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (22 bp):
AGAGAAAAAGAAGAAATAAGTG
Found at i:12983481 original size:43 final size:43
Alignment explanation
Indices: 12983433--12983559 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
12983423 GACATTGAGA
* * *
12983433 GGAACATTGTTTCCTAAAATTGGAAGTATGAGATTTATTG-TGT
1 GGAACATTGTTTCCTAATATTGGAAGTATGTGATTAATTGAT-T
* * ** *
12983476 GGAACACTT-TTTCCTATTATTGAAAGTATGTGAACAAATGATT
1 GGAACA-TTGTTTCCTAATATTGGAAGTATGTGATTAATTGATT
*
12983519 GGAACATTGTTTCCTAATATT-GATAGTATGTGATTGATTGA
1 GGAACATTGTTTCCTAATATTGGA-AGTATGTGATTAATTGA
12983560 GAGCATGATA
Statistics
Matches: 66, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
42 3 0.05
43 60 0.91
44 3 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (43 bp):
GGAACATTGTTTCCTAATATTGGAAGTATGTGATTAATTGATT
Found at i:12983778 original size:27 final size:28
Alignment explanation
Indices: 12983748--12983803 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
12983738 TACCGAGGGG
* * *
12983748 ATTGGCAATCTTTATCGCGTTATT-GTT
1 ATTGGCAATCTCTATAGCATTATTCGTT
*
12983775 ATTGGCTATCTCTATAGCATTATTCGTT
1 ATTGGCAATCTCTATAGCATTATTCGTT
12983803 A
1 A
12983804 GTCGATAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.46
Consensus pattern (28 bp):
ATTGGCAATCTCTATAGCATTATTCGTT
Found at i:12989874 original size:20 final size:21
Alignment explanation
Indices: 12989846--12989884 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
12989836 CAAAGAGGAA
*
12989846 AAGAGAAGAAGA-AAAAGATG
1 AAGAAAAGAAGAGAAAAGATG
12989866 AAGAAAAGAAGAGAAAAGA
1 AAGAAAAGAAGAGAAAAGA
12989885 ATAAATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (21 bp):
AAGAAAAGAAGAGAAAAGATG
Found at i:12990723 original size:251 final size:249
Alignment explanation
Indices: 12989855--12990945 Score: 1166
Period size: 251 Copynumber: 4.4 Consensus size: 249
12989845 AAAGAGAAGA
* * * * *
12989855 AGAAAAAGATGAAGAAAAGAAGAGAAAAGAATAAATAAGTTTTAATGGGAGAAAAATTAAGTTTA
1 AGAAAAAGATGAAGAAATG-AGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTA
* * * * * *
12989920 TTTGAGTAGGAGGAGAGAGAATATGTATATAGGTTCATTTTCG-CATTAAGTAAAGGCAAATGTC
65 TCTAAGT--GAGAAGAGAGAATA--TATACAGGTTCATTTT-GACATTAAGTAAAGGCAAATATA
* * * *
12989984 AATATAAATAATTCTGAGATGATGTCAATATATATACATATATATAACGGTTTAACTGAAAGTTT
125 AATATATATAATGCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTG-AAGTTT
* *
12990049 GCCAGCAACGTCATTACTCACTTTTCTTTTTCCTTTAATCATCTTAACATAAAC-AAACAAAG
189 GGCAGCAACCTCATTACTCACTTTTC-TTTTCCTTTAATCATCTTAACATAAACTAAA-AAAG
12990111 AGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT
1 AGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT
* * * * *
12990176 TTGAGTGAGAAGAGAGAATATTTACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATG
66 CTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAGTAAAGGCAAATATAAATATA
* * *
12990241 TATAATGCTAAGATGAAGTCAATATATATATATATATATATATAAAAAGGTTTAATTGAAGGCTT
131 TATAATGCTAAGATGATGTC---A-ATATATATACATATATAT--AAAGGTTTAACTGAA-G-TT
* * * * * * * *
12990306 T-GTAGTAGCCT-ATTTACACACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAACAAAG
188 TGGCAGCAACCTCA-TTACTCAC-TTTTCTTTTCCTTTAATCATCTTAACATAAACTAAAAAAG
* * * *
12990368 AGAAAAAGTTGAAGAAGAAATGAGAGAAAAGAAGAAATAAGTTTTAGTGGGAGAAGAATTAAGTT
1 AGAAAAA---GATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTT
* * * * * * ** * *
12990433 TATCTAAGTAAGAGGAGAGAATATACATAGATTCATTTTGGCATTCTGTAAAGGCAAATGTCAAT
63 TATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAGTAAAGGCAAATATAAAT
*
12990498 ATATATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAACGTTTGGC
128 ATATATAATGCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAA-GTTTGGC
12990563 AGCAACCTCATTACTCACTTTTCATTTTCCTTTAATCATCTTAACATAAACTAAAAAAG
192 AGCAACCTCATTACTCACTTTTC-TTTTCCTTTAATCATCTTAACATAAACTAAAAAAG
* * *
12990622 AGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGGTTGAATGAGATAAGAATTAAGTTTAT
1 AGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT
* * *
12990687 CTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATA
66 CTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAGTAAAGGCAAATATAAATATA
12990752 TATAATGCTAAGATGATGT--A-A-ATAT--ATATATAT----G---AA--G--GTTTGGCAGCA
131 TATAATGCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAAGTTTGGCAGCA
* * * * * **
12990800 ACCTCATTACTCACGTTTCCTTTTCCTTTCATCATTTTAACATCAGCTAACAAATT
196 ACCTCATTACTCAC-TTTTCTTTTCCTTTAATCATCTTAACATAAACTAA-AAAAG
* * * *
12990856 A-ATAAAGATGAAGAAATGAAAAAAG-GTAAGAAATAAGCTTGAATGGGAGAAGAATTAAGTTTA
1 AGAAAAAGATGAAGAAATGAGAGAAGAG-AAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTA
* * *
12990919 TCTAAGTGAGAGGAAAGGATATATACA
65 TCTAAGTGAGAAGAGAGAATATATACA
12990946 TGTCAATTGT
Statistics
Matches: 717, Mismatches: 97, Indels: 65
0.82 0.11 0.07
Matches are distributed among these distances:
232 1 0.00
233 129 0.18
234 8 0.01
236 1 0.00
238 2 0.00
241 1 0.00
245 8 0.01
247 4 0.01
248 1 0.00
249 1 0.00
250 1 0.00
251 175 0.24
253 21 0.03
254 68 0.09
255 66 0.09
256 38 0.05
257 60 0.08
258 10 0.01
260 122 0.17
ACGTcount: A:0.43, C:0.09, G:0.18, T:0.30
Consensus pattern (249 bp):
AGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT
CTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAGTAAAGGCAAATATAAATATA
TATAATGCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAAGTTTGGCAGCA
ACCTCATTACTCACTTTTCTTTTCCTTTAATCATCTTAACATAAACTAAAAAAG
Found at i:12992467 original size:610 final size:614
Alignment explanation
Indices: 12990563--12992803 Score: 2806
Period size: 611 Copynumber: 3.7 Consensus size: 614
12990553 AACGTTTGGC
* * * ** *
12990563 AGCAACCTCATTACTCAC-TTTTCATTTTCCTTTAATCATCTTAACATAAACTAA-AAAAGAGAA
1 AGCAGCCTCTTTACTCACTTTTTC-TTTTCCTTTCATCAAATTAACATCAACTAACAAAA-AGAA
* * * * * * * *
12990626 AAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGGTTGAATGAGATAAGAATTAAGTTTATCT-A
64 AAAGATGAAGAAATGGGGGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTACCTGA
* *
12990690 -AGT--GAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATA
129 GAGTGAGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATA
12990752 TATAATGCTAAGATGATG----TA---A-ATATATAT---A----TA--TGAAGG-TTTGGCAGC
194 TATAATGCTAAGATGATGTCAATATTTATATATATATAAAAGGTTTATCTGAAGGATTTGGCAGC
* * * * *
12990799 AACCTCATTACTCACGTTTCCTTTTCCTTTCATCATTTTAACATCAGCTAACAAATT-AATAAAG
259 AACCTTAATACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAA-AAAG
* * *
12990863 ATGAAGAAATGAAAAAAGGTAAGAAATAAGCTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGA
323 ATGAAGAAATGAGAAAA-G-AAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGA
* *
12990928 GAGGAAAGGATATATACATGTCAATTGT-CATTCGTTATCACCAAAAGATCTAGAAATCATGTTC
386 GAGGAGAGGATATATACAGGTCAATTGTGC-TTCGTTATCACCAAAAGATCTAGAAATCATGTTC
* * * *
12990992 AACCTAAAGACGCAGATTGGAAACATATAATTAAAACTCGTCTTTGTTATAAACATGAATTAAGA
450 AACCTAAAGATGCAGATTAGAAACATATAATTAAAATTCATCTTTGTTATAAACATGAATTAAGA
* * *
12991057 AAGAATTTTGGATGATATTCCTCATAAATTTAAACCTATGTCTTTGTGGTAGGCTTGGCAATGAT
515 AAGAATTTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTAGGCTTGGCAATGAT
12991122 GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTT
580 GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTT
* * * * *
12991157 AGCACCCTCTTTACACACTTTTTCTTTTACATTCATCACATTAACATCAACTAACAAAAAGAAAA
1 AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAA
* * *
12991222 GAGATGAAGAAATGGGAGAAAAGAAGAAATAAATTTTAATGGGAGAAGAATTAAGTTTATCTGAG
66 -AGATGAAGAAATGGGGGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTA-C---C
*
12991287 TAAGAAGATCTGAGTGAGAAGAGAGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGAC
126 T-----GA---GAGTGAG-AGA-AGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGC
* *
12991352 AAATATAAATATATATAATGCTATGATGATGTCAATATATGTATATATAAATAAAAGGTTTATCT
181 AAATATAAATATATATAATGCTAAGATGATGTCAATAT-T-TATATATATATAAAAGGTTTATCT
*
12991417 GAA-GATTTGGCAGCAACCTTATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTA
244 GAAGGATTTGGCAGCAACCTTAATACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTA
* * *
12991481 ACAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAGAAATAAGTTTGAATTGAAAAAGAATTAA
309 ACAAATTGAAAAAGATGAAGAAAT--GAGAAAAGAAGAAATAAGTTTGAATGGGAGAAGAATTAA
* * *
12991546 GTTTTTCTGAGTGGGAGGAGAGGATATATACAGGTCAATTGTGATTCGTTATCACCAAAAGA--T
372 GTTTATCTGAGTGAGAGGAGAGGATATATACAGGTCAATTGTGCTTCGTTATCACCAAAAGATCT
* * * *
12991609 -GAAATCGTGTTGAACCTAAACAAT-CAGATTAGAAACATATAATTAAAATTCTTCTTT-TTATA
437 AGAAATCATGTTCAACCTAAA-GATGCAGATTAGAAACATATAATTAAAATTCATCTTTGTTATA
* * *
12991671 AACGTAAATTAAGAAAGAATTTTGGATGATATTCGTCATAAATTTAAACTTATTTCTTGGTGGTA
501 AACATGAATTAAGAAAGAATTTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTA
* *
12991736 GGCTTGGCAATGATGGAGATTAGGTAATGGAAACAACTGAAGGTTTTTT
566 GGCTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTT
* * * *
12991785 AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATTATACTAATATCAACTAACAAAAAGAAAA
1 AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAA
* *
12991850 CGATGAAGAAATGGGGGAAAAGAAGAAATAAGTTTTAATGGGATAAGAATTAAGTTTACCTGAGA
66 AGATGAAGAAATGGGGGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTACCTGAGA
* *
12991915 GTGAGA-AAGAGAGAATATATGCAGGCTCATTTTGACATTGAGTAATGGCAAAAATAAATATATA
131 GTGAGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATA
* * * *
12991979 TAATGCTAAGATGATATCAATATTTATGTATATATACAAAGGTTTATCTGAACG-TTTGACAGCA
196 TAATGCTAAGATGATGTCAATATTTATATATATATA-AAAGGTTTATCTGAAGGATTTGGCAGCA
* * *
12992043 ACCTTAATACTGAGTTTTCCTTTTGCTTTCATCATCTTAACATCAACTAACAAATTGAAAAA-AT
260 ACCTTAATACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGAT
*
12992107 GAAGAAA-GAGAAAAGAAGAAATAAGTTTGGATGGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
325 GAAGAAATGAGAAAAGAAGAAATAAGTTTGAAT-GGGAGAAGAATTAAGTTTATCTGAGTGAGAG
*
12992171 GAGAGGATATATACAGGTCAATTGTGCTTTGTTATCACCAAAAGATCTAGAAATCATGTTCAACC
389 GAGAGGATATATACAGGTCAATTGTGCTTCGTTATCACCAAAAGATCTAGAAATCATGTTCAACC
* *
12992236 TAAAGATGCAGATTATAAACATATAATTAAAATTCATCTTTGTTATAAACCTGAATTAAGAAA-A
454 TAAAGATGCAGATTAGAAACATATAATTAAAATTCATCTTTGTTATAAACATGAATTAAGAAAGA
*
12992300 ATTTTGGATGATATTCGTCATAAATTT-AACCTATTTCTTGGTGGTAGGCTTCGCAATGATGGAG
519 ATTTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTAGGCTTGGCAATGATGGAG
* *
12992364 ATTGGGTAATGGTGACAACTTAAGGTTTTTT
584 ATTGGGTAATGGAGACAACTGAAGGTTTTTT
*
12992395 AGCAGCATCTTTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAA
1 AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAA
* * * *
12992460 AGATGAAGAAAAGGGAGG-AAAGAAGAAAAAAAGTTTTAATGGGAGAAGAATTAAGATTATCT-A
66 AGATGAAGAAATGGG-GGAAAAGAAG-AAATAAGTTTTAATGGGAGAAGAATTAAGTTTACCTGA
* * * * * * * *
12992523 -AGTGAGAGGAGGAAAAAATATATAG-AAGTTCATTTTGGCATTGAGTAAAGGCAAATGTCAATA
129 GAGTGAGA-GAAGAGAGAATATAT-GCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATA
* * * * * *
12992586 TATATAATTCTAAGATGATGTCAATA-TAAAACATATATATAAAGGTTTAACTGAAGGTTTTGGC
192 TATATAATGCTAAGATGATGTCAATATTTATATATATATA-AAAGGTTTATCTGAAGGATTTGGC
* * ** * * * ***
12992650 AGCAACC-TCATACTCACTTTTCCTTTTCCTTTAATCGCCTTAATATAAACTAACTAGGAGAAAA
256 AGCAACCTTAATACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAA
* * *
12992714 AGATGAGGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTTAGTTTATCTGAGT
321 AGATGAAGAAATGAGA-AA-AGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
*
12992779 GAGGAGAGAGAGAATATATACAGGT
384 GA-GAG-GAGAGGATATATACAGGT
12992804 TCAGTTTGAC
Statistics
Matches: 1433, Mismatches: 148, Indels: 111
0.85 0.09 0.07
Matches are distributed among these distances:
594 45 0.03
595 60 0.04
599 1 0.00
605 1 0.00
607 24 0.02
608 69 0.05
609 10 0.01
610 234 0.16
611 281 0.20
612 103 0.07
613 99 0.07
614 21 0.01
615 24 0.02
617 2 0.00
618 2 0.00
622 1 0.00
623 8 0.01
626 2 0.00
627 54 0.04
628 168 0.12
629 48 0.03
630 4 0.00
631 1 0.00
632 162 0.11
633 3 0.00
634 6 0.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (614 bp):
AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAA
AGATGAAGAAATGGGGGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTACCTGAGA
GTGAGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATA
TAATGCTAAGATGATGTCAATATTTATATATATATAAAAGGTTTATCTGAAGGATTTGGCAGCAA
CCTTAATACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATG
AAGAAATGAGAAAAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGA
GAGGATATATACAGGTCAATTGTGCTTCGTTATCACCAAAAGATCTAGAAATCATGTTCAACCTA
AAGATGCAGATTAGAAACATATAATTAAAATTCATCTTTGTTATAAACATGAATTAAGAAAGAAT
TTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTAGGCTTGGCAATGATGGAGAT
TGGGTAATGGAGACAACTGAAGGTTTTTT
Found at i:12992935 original size:253 final size:251
Alignment explanation
Indices: 12992405--12993281 Score: 1064
Period size: 254 Copynumber: 3.5 Consensus size: 251
12992395 AGCAGCATCT
* * ** * *
12992405 TTACTCACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAA
* * * * *
12992470 AAGGGAGGAA-AGAAGAAAAAAAGTTTTAATGGGAGAAGAATTAAGATTATCTAAGTGAGAGGAG
66 AAGAGA-GAAGAGAAG-AAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA-GA-
* * * * *
12992534 GAAAAAATATATAGAAGTTCATTTTGGCATTGAGTAAAGGCAAATGTCAATATATATAATTCTAA
127 GAAAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAA
*
12992599 GATGATGTCAATATAA-A-ACATATATATAAAGGTTTAACTGAAGGTTTTGGCAGCAACCTCA
192 GATGATGTCAATATAATATAC-T-TATATAAAGGTTTATCTGAAGG-TTTGGCAGCAACCTCA
** * * * *
12992660 -TACTCACTTTTCCTTTTCCTTTAATCGCCTTAATATAAACTAACTAGGAGAAAAAGATGAGGAA
1 TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAA
* * *
12992724 ATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTTAGTTTATCTGAGTGAGGAGAGAG
66 AAGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGA-GAGAGAA
* * * * **
12992789 AGAATATATACAGGTTCAGTTTGACAGTGAGTAATGGCAAATGTGAATATGTATAATGGTAAGAT
130 AGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAAGAT
* * *
12992854 GATGTCAATATATATATATCTTTATATAAAGCTTT-TCTAAAGGTTTGGCAGCAACCTTA
195 GATGTCAATATA-ATATA-C-TTATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCA
* *
12992913 TTACTCAC-TTTCCTTTTCCTTTAATCTTCTTAACATAAATTAACAAAGAGGAAAAAGATGAAGA
1 TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGA-GAAAAAGATGAAGA
* * * *
12992977 AAAGAGAGGAGAGAAGAAAGAAGTTTGAAA-AGCAGAAGAATTAAGTTTAT-TGAGTGAGAG-GA
65 AAAGAGAGAAGAGAAGAAATAAGTTT-AAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGAGA
* * *
12993039 TAGAATATATACAGGTTCATTTTGTCATTGAGTAATGGCTAATGTCAATATATATAATTCTAAGA
129 AAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAAGA
* * *
12993104 TGATGTC---A-AATATA--TATATAAAGGTTTATCTGAAGGTTTGCCAACAACCGCA
194 TGATGTCAATATAATATACTTATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCA
* *
12993156 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAA
* *
12993221 ATGAGAAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
66 AAGAG-AGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
12993282 GATATATATT
Statistics
Matches: 535, Mismatches: 73, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
242 12 0.02
243 48 0.09
244 73 0.14
245 10 0.02
246 5 0.01
247 1 0.00
248 1 0.00
251 65 0.12
252 71 0.13
253 100 0.19
254 131 0.24
255 16 0.03
256 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (251 bp):
TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAA
AAGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGAGAAA
GAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAAGATG
ATGTCAATATAATATACTTATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCA
Found at i:12993232 original size:19 final size:18
Alignment explanation
Indices: 12993204--12993240 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
12993194 AACTAACAAA
12993204 GAGAAAAAGATGAAGAAAT
1 GAGAAAAAGA-GAAGAAAT
*
12993223 GAGAAGAAGAGAAGAAAT
1 GAGAAAAAGAGAAGAAAT
12993241 AAGTTTGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.30, T:0.08
Consensus pattern (18 bp):
GAGAAAAAGAGAAGAAAT
Found at i:12993766 original size:26 final size:27
Alignment explanation
Indices: 12993715--12993767 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
12993705 CACGTTCCCT
* *
12993715 CCCCCTTTTCTTTTCTTCTTCTCCTTA
1 CCCCATTTTCTTTTCTTCTTCGCCTTA
12993742 CCCCATTTTCTCTTT-TTCTT-GCCTTA
1 CCCCATTTTCT-TTTCTTCTTCGCCTTA
12993768 TCGCCACCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.22
27 15 0.65
28 3 0.13
ACGTcount: A:0.06, C:0.38, G:0.02, T:0.55
Consensus pattern (27 bp):
CCCCATTTTCTTTTCTTCTTCGCCTTA
Found at i:12994655 original size:24 final size:24
Alignment explanation
Indices: 12994594--12994656 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
12994584 TAGAGTAATA
* * *
12994594 AGAGTTTGACTCAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAC
*
12994618 AGAGTTTAATTGAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
12994642 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
12994657 AGTTTGACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:12994684 original size:62 final size:61
Alignment explanation
Indices: 12994596--12994718 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 61
12994586 GAGTAATAAG
*
12994596 AGTTTGACTCAAACAAATAAATAGAGTTTAATTG-AAACAAATAAACAGAGTTTAACTGAAA
1 AGTTTGACTCAAAAAAATAAATAGAGTTTAA-TGAAAACAAATAAACAGAGTTTAACTGAAA
12994657 AGTTTGACTCAAATAAAATAAATAGAGTTTAATGAAAACAAATAAACAGAGTTTAACTGAAA
1 AGTTTGACTCAAA-AAAATAAATAGAGTTTAATGAAAACAAATAAACAGAGTTTAACTGAAA
12994719 GATTATTTCT
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
61 15 0.25
62 44 0.75
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.26
Consensus pattern (61 bp):
AGTTTGACTCAAAAAAATAAATAGAGTTTAATGAAAACAAATAAACAGAGTTTAACTGAAA
Found at i:12994700 original size:24 final size:25
Alignment explanation
Indices: 12994672--12994718 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
12994662 GACTCAAATA
*
12994672 AAATAAATAGAGTTTAA-TGAAAAC
1 AAATAAACAGAGTTTAACTGAAAAC
12994696 AAATAAACAGAGTTTAACTGAAA
1 AAATAAACAGAGTTTAACTGAAA
12994719 GATTATTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.57, C:0.06, G:0.13, T:0.23
Consensus pattern (25 bp):
AAATAAACAGAGTTTAACTGAAAAC
Found at i:12996648 original size:24 final size:24
Alignment explanation
Indices: 12996620--12996676 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
12996610 TAGAGTAATA
* * *
12996620 AGAGTTTGACTCAGACAAATAAAT
1 AGAGTTTAACTCAAACAAATAAAC
* *
12996644 AGAGTTTAATTGAAACAAATAAAC
1 AGAGTTTAACTCAAACAAATAAAC
12996668 AGAGTTTAA
1 AGAGTTTAA
12996677 AAAAGATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (24 bp):
AGAGTTTAACTCAAACAAATAAAC
Found at i:12998789 original size:253 final size:249
Alignment explanation
Indices: 12998150--12998790 Score: 809
Period size: 253 Copynumber: 2.6 Consensus size: 249
12998140 AAGGGTTTGT
* * * * * *
12998150 AGCAGCCTCTTTACTCACTTTTCTTTTTCTTTCATCATATTAACATCTACTAACAGAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTCCTTTCATCATCTTAACATCAACTAACA-AAGAGAAAA
* *
12998215 AGATGAAGAAATGAGAGAAAAAAAGAAATAAG-TTGAATGGGAGAAGAATTAAG-TTATCTGAGT
65 AGAAGAAGAAATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* *
12998278 GAGAGGAGAGAATATATACAAGTTCATTTTGGCATTGAGTAAAGGAAAAATGTCAATATATATTA
130 GAGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAA
* * * *
12998343 TTCTAAGATTATGTCAATATATATACATATATAAAGGTTTAACTGTAGGTTTGGC
195 TGCTAAGATGATGTCAATATATATACATATATAAAGGTTTAACTGAAAGTTTGGC
* * * *
12998398 AACAACCTCATTACTCAC-TTTCCTTTTCCTTTAATCATCTTAACTTAAACTAACAAAGAG--AA
1 AGCAACCTCATTACTCACTTTTCC-TTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAA
* * * *
12998460 A-AAGATG-AAT-TGAGAAGAAAAGAAATAGGTTTGAATAGGAGAAGAATTAAGTTTATCTGAGT
65 AGAAGAAGAAATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* * * * *
12998522 GAGATGAGAGAATATATACAGGTTCTTTTTGACATTGAGTAATGG-CAAATGTCAATATATATAA
130 GAGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAA
* * **
12998586 TGCTAAGATGATGT-ATATATCTATCTATCTATATATAAATGTTTATTTGAAAG-TTGGC
195 TGCTAAGATGATGTCA-ATA--TATATA-C-ATATATAAAGGTTTAACTGAAAGTTTGGC
12998644 AGCAACCTCATTACTCACTTTTCCTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAG
1 AGCAACCTCATTACTCACTTTTCCTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAA-
* * *
12998709 ATGAAGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGCGAAGAATTTAGTTTATCTGAG
65 A-GAAGAAGAAATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAG
*
12998774 TGAGAGGATAGAATATA
129 TGAGAGGAGAGAATATA
12998791 CAGAGGCTCA
Statistics
Matches: 333, Mismatches: 44, Indels: 27
0.82 0.11 0.07
Matches are distributed among these distances:
242 17 0.05
243 55 0.17
244 54 0.16
245 8 0.02
246 56 0.17
247 32 0.10
248 42 0.13
249 1 0.00
251 5 0.02
252 3 0.01
253 60 0.18
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (249 bp):
AGCAACCTCATTACTCACTTTTCCTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAA
GAAGAAGAAATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTG
AGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAAT
GCTAAGATGATGTCAATATATATACATATATAAAGGTTTAACTGAAAGTTTGGC
Found at i:12999167 original size:26 final size:25
Alignment explanation
Indices: 12999120--12999169 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
12999110 AGTGATCACA
12999120 TATTTTTTCTTTTCTTTCATTTTTG
1 TATTTTTTCTTTTCTTTCATTTTTG
*
12999145 TATTTCTTTTTTTTC-TTCTATTTTT
1 TATTT-TTTCTTTTCTTTC-ATTTTT
12999170 TACACTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (25 bp):
TATTTTTTCTTTTCTTTCATTTTTG
Found at i:13001601 original size:230 final size:232
Alignment explanation
Indices: 13001149--13001620 Score: 619
Period size: 230 Copynumber: 2.0 Consensus size: 232
13001139 TGAGAGAAAA
* * * * * * * *
13001149 GAAGTAATAAGTTTTAATGGAAGAAGAATTATGTTTATCTTAGTGAGACGAAAGAATATTTACTG
1 GAAGAAATAAGTTTGAATGGAAGAAGAATTAAGCTTATCTGAGTGAGAAGAAAGAATATATACAG
** *
13001214 GTTCATTTTGGCATTCAATAAAGGCAAATATCAATATATATAAATCTTAGATGATGTCAATCTAT
66 GTTCATTTTAACATTCAATAAAGGCAAATATCAATATATATAAATCTAAGATGATGTCAA-CTAT
* * *
13001279 ATACATATATATAAAGGTTTAACTGAAGGTTTGGTAGCAACCTCATTACTCACTTTTCCTTTTCC
130 ATA-ATATATATAAAGGTTTAACTGAAGATTTGGCAACAACCTCATTACTCACTTTTCCTTTTCC
*
13001344 TTTAATCATCTTAACATAAAATAACAAAGAGAAAAAGAT
194 TCTAATCATCTTAACATAAAATAACAAAGAGAAAAAGAT
* **
13001383 GAAGAAATAAGTTTGAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAATCAAGAATATATACAG
1 GAAGAAATAAGTTTGAATGGAAGAAGAATTAAGCTTATCTGAGTGAGAAGAAAGAATATATACAG
* * *
13001448 GTTCATTTTAACATTGAGTAATGGCAAATAT-AAT-TATATATAATGCTAAGATGATGTCAA-TA
66 GTTCATTTTAACATTCAATAAAGGCAAATATCAATATATATA-AAT-CTAAGATGATGTCAACTA
* *
13001510 TAT-ATATATATAAAGGTTTATCTGAAGATTTGGCAACAACCTCATTACTTACTTTTCCTTTTCC
129 TATAATATATATAAAGGTTTAACTGAAGATTTGGCAACAACCTCATTACTCACTTTTCCTTTTCC
* * * * **
13001574 TCTCATTATCTTAACATCAACTAACAAATTGAAAAAGAT
194 TCTAATCATCTTAACATAAAATAACAAAGAGAAAAAGAT
13001613 GAAGAAAT
1 GAAGAAAT
13001621 GGGAGAAGAG
Statistics
Matches: 207, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
230 96 0.46
232 11 0.05
233 6 0.03
234 94 0.45
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (232 bp):
GAAGAAATAAGTTTGAATGGAAGAAGAATTAAGCTTATCTGAGTGAGAAGAAAGAATATATACAG
GTTCATTTTAACATTCAATAAAGGCAAATATCAATATATATAAATCTAAGATGATGTCAACTATA
TAATATATATAAAGGTTTAACTGAAGATTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCTC
TAATCATCTTAACATAAAATAACAAAGAGAAAAAGAT
Found at i:13002357 original size:251 final size:250
Alignment explanation
Indices: 13001909--13002558 Score: 867
Period size: 251 Copynumber: 2.6 Consensus size: 250
13001899 TTTTTAGTAG
* * * * * * *
13001909 CCTCTTTACTCATTTTTTCTTTTCGTTTCATCATATTAACATCAACTAACAAGAAGAAGAAGATA
1 CCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAG-AGAAAAAGATG
* * *
13001974 AAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAG-A
65 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
* * * * * * * *
13002038 GAAGAAAATCTATACAGGTTCGTTTTGGCATTGAGTAAAGGCAAATTTCAATATATATAATTCTA
130 G-AGAGAATATATACAGGTTCATTTTGACATTGAATAAAGGCAAATATAAATATATATAATGCTA
* * *
13002103 AGATGATTTCAATACATAAACATATATATAATGGTTTAA-CTGAAGGTTTGGCAGCAA
194 AGATGATGTCAATACATAAACATATATACAAAGG-TTAATCTGAAGGTTTGGCAGCAA
* *
13002160 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACTAAGAGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAAC-AAGAGAAAAAGATG
** *
13002225 AAGAAATGAGAGAAGAGAATG-AATAAGTTTGAATGGGAGAAGAATTAAGTACATCTAAGTGAGA
65 AAGAAATGAGAGAAGAGAA-GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
*
13002289 AGAGAGAATATATACAGGTTCATTTTGACATTGAATAATGGCAAATATAAATATATATAATGCTA
129 AGAGAGAATATATACAGGTTCATTTTGACATTGAATAAAGGCAAATATAAATATATATAATGCTA
* *** *
13002354 AGATGATGTCAATATATATGTATATATGCAAAGGTTAATCTGAAGGTTTGGCAGCAA
194 AGATGATGTCAATACATAAACATATATACAAAGGTTAATCTGAAGGTTTGGCAGCAA
* * * * *
13002411 CCTTATTACTCACTTTTCCTTCTCCTTTCATCATCTTAGCATCAACTAA-AAAATTAAAAAAGAT
1 CCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAGA--GAAAAAGAT
13002475 GAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
64 GAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
*
13002540 AGAGAGGATATATACAGGT
129 AGAGAGAATATATACAGGT
13002559 CAATTGTGAT
Statistics
Matches: 349, Mismatches: 43, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
249 3 0.01
250 5 0.01
251 335 0.96
252 6 0.02
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (250 bp):
CCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAGAGAAAAAGATGA
AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAG
AGAGAATATATACAGGTTCATTTTGACATTGAATAAAGGCAAATATAAATATATATAATGCTAAG
ATGATGTCAATACATAAACATATATACAAAGGTTAATCTGAAGGTTTGGCAGCAA
Found at i:13003213 original size:860 final size:854
Alignment explanation
Indices: 13000854--13003405 Score: 3592
Period size: 858 Copynumber: 3.0 Consensus size: 854
13000844 TTTACTTGCC
* * * *
13000854 CAATTGTGATTCGTTATAAACCAAAAGATCTAGAAATGATGTCGAACCTAAAGGCGCAGATTAGA
1 CAATTGTGATTCATTAT-CACCAAAAGA-CTAGAAATCATGTCGAACCTAAAGACGCAGATTAGA
* * * *
13000919 AATATATAATTAAAATTCGACTTTATTATAAACATGAATTAAGAAAGAATTTTGGATGATACTCG
64 AATATATAATTAAAATACGTCTTTGTTATAAACATGAATTAAGAAAGAA-TTTGGATGATATTCG
* * * *
13000984 T-TATAAATTTAAGCCTATTTCTTCGTTGTTGGCTTGGCAATGATGGAGATTGGGTAATGGAGAC
128 TCT-TAAATTTAAACCTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATT-GGTAATGGAGAC
* * * * *
13001048 AACTGAAGGCTTTGTAGCAGCATCTTTACTCACTTTTTCTTTTCCTTTCATCATTTTAACATCAA
191 AACTTAAGTCTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAA
* * * * * *
13001113 CTAACAAAGATAAAGAGATGAAGAAATGAGAGAAAAGAAGTAATAAGTTTTAATGGAAGAAGAAT
256 CTAACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAAT
* * * * * *
13001178 TATGTTTATCTTAGTGAGACGAA-AGAATATT-TACTGGTTCATTTTGGCATTCAATAAAGGCAA
321 TAAGTTTATCTGAGTGAGA-GAAGAAAATATTATACAGGTTCATTTTGGCATTGAGTAAAGGCAA
* * * *
13001241 ATATCAATATATATAAATCTTAGATGATGTCAATCTATATACATATATATAAAGGTTTAACTGAA
385 ATATCAATATATATAATTCTAAGATGATGTCAATATATAAACATATATAT-AAGGTTTAACTGAA
*
13001306 GGTTTGGTAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACAT-AA--AAT--
449 GGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAATAA
* *
13001366 -A-ACAAAGA-GAA-AAA-GAT-GAAGA-AAT--AAGTTTGAATGGGAGAAGAATTAAGCTTATC
514 GAGAAAAAGATGAAGAAATGATAGAAGAGAATAAAAGTTTGAATGGGAGAAGAATTAAGTTTATC
* * * *
13001422 TGAGTGAGAA-TCAAGAATATATACAGGTTCATTTTAACATTGAGTAATGGCAAATATAATTATA
579 TAAGTGAGAAGT-AAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATA
* *
13001486 TATAATGCTAAGATGATGTCAATATATATATATAT-AAAGGTTTATCTGAAGATTTGGCAACAAC
643 TATAATGCTAAGATGATGTCAATATATATATATATCAAAGGTTAATCTGAAGGTTTGGCAACAAC
* * *
13001550 CTCATTACTTACTTTTCCTTTTCCTCTCATTATCTTAACATCAACTAACAAATTGAAAAAGATGA
708 CTCATTACTCACTTTTCCTTTTCCTTTCATTATCTTAACATCAACTAACAAATTAAAAAAGATGA
* * * *
13001615 AGAAATGGGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAACTAAGTTTATCCGAGTTAGAGG
773 AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGG
*
13001680 AGAGGATATATATAGGT
838 AGAGGATATATACAGGT
* * *
13001697 CAATAGTGATTTATTATCACCAAAAGATCTAGAAATCATGTCGAACCTAAAGACGCAAATTAGAA
1 CAATTGTGATTCATTATCACCAAAAGA-CTAGAAATCATGTCGAACCTAAAGACGCAGATTAGAA
* * * * *
13001762 ACATATAATTAAAATATGTCTTTGTTATAAACATGAATTAAGAAAGAGGTTTTGATGATATTCCT
65 ATATATAATTAAAATACGTCTTTGTTATAAACATGAATTAAGAAAGA-ATTTGGATGATATTCGT
* * * **
13001827 CATAAATTTAAACCTATTTCTTGGTGGTAGGATTGGCAATGATGGAGATTGGCTAATAAAGACAA
129 CTTAAATTTAAACCTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTGG-TAATGGAGACAA
* * * *
13001892 C-TAA-TGGTTTTTAGTAGCCTCTTTACTCATTTTTTCTTTTCGTTTCATCATATTAACATCAAC
193 CTTAAGT-CTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAAC
* * *
13001955 TAACAAGAAGAAGAAGATAAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATT
257 TAACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATT
* *
13002020 AAGTTTATCTGAGTGAGAGAAGAAAAT-CTATACAGGTTCGTTTTGGCATTGAGTAAAGGCAAAT
322 AAGTTTATCTGAGTGAGAGAAGAAAATATTATACAGGTTCATTTTGGCATTGAGTAAAGGCAAAT
* * *
13002084 TTCAATATATATAATTCTAAGATGATTTCAATACATAAACATATATATAATGGTTTAACTGAAGG
387 ATCAATATATATAATTCTAAGATGATGTCAATATATAAACATATATATAA-GGTTTAACTGAAGG
13002149 TTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACTAAG
451 TTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAA-TAAG
* **
13002214 AGAAAAAGATGAAGAAATGAGAGAAGAGAATGAATAAGTTTGAATGGGAGAAGAATTAAGTACAT
515 AGAAAAAGATGAAGAAATGATAGAAGAGAAT-AA-AAGTTTGAATGGGAGAAGAATTAAGTTTAT
13002279 CTAAGTGAGAAG-AGAGAATATATACAGGTTCATTTTGACATTGAA-TAATGGCAAATATAAATA
578 CTAAGTGAGAAGTA-AGAATATATACAGGTTCATTTTGACATT-AAGTAATGGCAAATATAAATA
13002342 TATATAATGCTAAGATGATGTCAATATATATGTATATATGCAAAGGTTAATCTGAAGGTTTGGCA
641 TATATAATGCTAAGATGATGTCAATATATA--TATATAT-CAAAGGTTAATCTGAAGGTTTGGCA
* * * * * *
13002407 GCAACCTTATTACTCACTTTTCCTTCTCCTTTCATCATCTTAGCATCAACTAAAAAATTAAAAAA
703 ACAACCTCATTACTCACTTTTCCTTTTCCTTTCATTATCTTAACATCAACTAACAAATTAAAAAA
13002472 GATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTG
768 GATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTG
*
13002537 AGAAGAGAGGATATATACAGGT
833 AGAGGAGAGGATATATACAGGT
*
13002559 CAATTGTGATTCATTATCACC-AAAGA-T-GAAATCATGTTGAACCTAAAGACGCAGATTAGAAA
1 CAATTGTGATTCATTATCACCAAAAGACTAGAAATCATGTCGAACCTAAAGACGCAGATTAGAAA
*
13002621 TATATAATTAAAATCCGTCTTTGTTATAAACATGAATTAAGAAAGAATTATGGATGATATTCGTC
66 TATATAATTAAAATACGTCTTTGTTATAAACATGAATTAAGAAAGAATT-TGGATGATATTCGTC
* *
13002686 TTTACTTTAAACCTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTAGGTAATGGAGACAAC
130 TTAAATTTAAACCTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATT-GGTAATGGAGACAAC
*
13002751 TTAAGTTTTTTTAGCAGCCTCTTTACTCACTTTTT-TTTTCCTTTCATCATATTAACATCAACTA
194 TTAAGTCTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTA
* * *
13002815 ACAAAAAGAAAAAGATGATGAAAAGGGAGAAAAGAAGAAAAAAGTTTTAATGGGAGAAGAATTAA
259 ACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAA
* *
13002880 GTTTATCTGAGTGAGAGAAGAAAATATATATACAGGTTTATTTTGGCATTGAGTAAAGGCAAATG
324 GTTTATCTGAGTGAGAGAAGAAAATAT-TATACAGGTTCATTTTGGCATTGAGTAAAGGCAAATA
* * *
13002945 TCAATATATATAATTCTAAGATGCTGTCAATATATAAAAATATATATATAGGTTTAACTAAAGGT
388 TCAATATATATAATTCTAAGATGATGTCAATATATAAACATATATATA-AGGTTTAACTGAAGGT
*
13003010 TTGGCAGCAACCTCATTTCTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAATAAAGA
452 TTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAAT-AAGA
13003075 GAAAAAGATGAAGAAATGATAGAAGAGAAGTAAGAAGTTTGAATGGGAGAAGAATTAAGTTTATC
516 GAAAAAGATGAAGAAATGATAGAAGAGAA-TAA-AAGTTTGAATGGGAGAAGAATTAAGTTTATC
*
13003140 TAAGTGAGAAGTTAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATAT
579 TAAGTGAGAAGTAAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATAT
* * *
13003205 ATAATGCTAAAATGATGTCAATATATATA-A-A-C---GTTTAA-CTGAAGGTTTGACAACAACC
644 ATAATGCTAAGATGATGTCAATATATATATATATCAAAGGTTAATCTGAAGGTTTGGCAACAACC
* * * *
13003263 TCATTACTCACTTTTCCTTTTCCTTTAATTATCTTAACATAAACTAACAAA-GAGAAAAAGACGA
709 TCATTACTCACTTTTCCTTTTCCTTTCATTATCTTAACATCAACTAACAAATTA-AAAAAGATGA
* *
13003327 AGAAATGAGATAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAGG
773 AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGG
* *
13003392 ATAGAATATATACA
838 AGAGGATATATACA
13003406 TGTTCATTTT
Statistics
Matches: 1522, Mismatches: 144, Indels: 79
0.87 0.08 0.05
Matches are distributed among these distances:
840 6 0.00
841 267 0.18
842 155 0.10
843 14 0.01
844 2 0.00
845 1 0.00
848 1 0.00
849 7 0.00
850 148 0.10
851 8 0.01
852 2 0.00
853 5 0.00
854 4 0.00
856 1 0.00
857 4 0.00
858 369 0.24
859 36 0.02
860 307 0.20
861 7 0.00
862 178 0.12
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (854 bp):
CAATTGTGATTCATTATCACCAAAAGACTAGAAATCATGTCGAACCTAAAGACGCAGATTAGAAA
TATATAATTAAAATACGTCTTTGTTATAAACATGAATTAAGAAAGAATTTGGATGATATTCGTCT
TAAATTTAAACCTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTGGTAATGGAGACAACTT
AAGTCTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAAC
AAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGT
TTATCTGAGTGAGAGAAGAAAATATTATACAGGTTCATTTTGGCATTGAGTAAAGGCAAATATCA
ATATATATAATTCTAAGATGATGTCAATATATAAACATATATATAAGGTTTAACTGAAGGTTTGG
CAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAATAAGAGAAAA
AGATGAAGAAATGATAGAAGAGAATAAAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGA
GAAGTAAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGC
TAAGATGATGTCAATATATATATATATCAAAGGTTAATCTGAAGGTTTGGCAACAACCTCATTAC
TCACTTTTCCTTTTCCTTTCATTATCTTAACATCAACTAACAAATTAAAAAAGATGAAGAAATGA
GAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAGGATA
TATACAGGT
Found at i:13003487 original size:253 final size:251
Alignment explanation
Indices: 13002763--13003666 Score: 1104
Period size: 241 Copynumber: 3.6 Consensus size: 251
13002753 AAGTTTTTTT
* * * * * * *
13002763 AGCAGCCTCTTTACTCACTTTT-TTTTTCCTTTCATCATATTAACATCAACTAACAAAAAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* * * * * *
13002827 AGATGATGAAAAGGGAGAAAAGAAGAAAAAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* * * *
13002892 GAGAGAAGA-AAATATATATACAGGTTTATTTTGGCATTGAGTAAAGGCAAATGTCAATATATAT
131 GAGAG--GATAGA-ATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATAT
* * * * * * *
13002956 AATTCTAAGATGCTGTCAATATATAAAAATATATATATAGGTTTAACTAAAGGTTTGGC
193 AATGCTAAGATGATGTCTACATATATAAATATATATAAAGGTTTAACTGAAGGTTTGGC
* *
13003015 AGCAACCTCATTTCTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAATAAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* * * *
13003080 AGATGAAGAAATGATAGAAGAGAAGTAAGAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* * * * *
13003145 GAGAAGTTAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAAT
131 GAGAGGATAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAAT
* * *
13003210 GCTAAAATGATG--T-C-------AATATATATAAACGTTTAACTGAAGGTTTGAC
196 GCTAAGATGATGTCTACATATATAAATATATATAAAGGTTTAACTGAAGGTTTGGC
* *
13003256 AACAACCTCATTACTCACTTTTCCTTTTCCTTTAATTATCTTAACATAAACTAACAAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* * *
13003321 AGACGAAGAAATGAGATAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGCTTATCTGAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
*
13003386 GAGAGGATAGAATATATACATGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAAT
131 GAGAGGATAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAAT
**
13003451 GCTAAGATGATGTCTACATATATATATATATATATAAAGGTTTATTTGAAGGTTTGGC
196 GCTAAGATGATGTCTACATATATA-A-ATATATATAAAGGTTTAACTGAAGGTTTGGC
* * * *
13003509 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACTTTAGCTAACAAAGA-AAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* *
13003573 AGATGAAGAAATTAGAGAAGAGAAGAGAAGAAATAAGTTTGATTGAGAGAAGAATTAAGTTTA-C
66 AGATGAAGAAA-T---G-AGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATC
* * *
13003637 ---CTGAGAGGATAGAATATATAGAGTTTCATT
126 TGAGTGAGAGGATAGAATATATACAGGTTCATT
13003667 CTCACATTTA
Statistics
Matches: 560, Mismatches: 73, Indels: 37
0.84 0.11 0.06
Matches are distributed among these distances:
241 217 0.39
243 1 0.00
244 1 0.00
251 58 0.10
252 36 0.06
253 204 0.36
256 2 0.00
257 41 0.07
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (251 bp):
AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
GAGAGGATAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAAT
GCTAAGATGATGTCTACATATATAAATATATATAAAGGTTTAACTGAAGGTTTGGC
Found at i:13003641 original size:22 final size:22
Alignment explanation
Indices: 13003596--13003643 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13003586 AGAGAAGAGA
*
13003596 AGAGAAGAAATAAGTTTGATTG
1 AGAGAAGAAATAAGTTTGACTG
*
13003618 AGAGAAGAATTAAGTTT-ACCTG
1 AGAGAAGAAATAAGTTTGA-CTG
13003640 AGAG
1 AGAG
13003644 GATAGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.44, C:0.04, G:0.27, T:0.25
Consensus pattern (22 bp):
AGAGAAGAAATAAGTTTGACTG
Found at i:13009462 original size:16 final size:17
Alignment explanation
Indices: 13009441--13009472 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
13009431 TGACGTCCTT
13009441 ATTTTTCT-TTTCTTTC
1 ATTTTTCTATTTCTTTC
13009457 ATTTTTCTATTTCTTT
1 ATTTTTCTATTTCTTT
13009473 TTTTCTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTCTATTTCTTTC
Found at i:13010675 original size:21 final size:21
Alignment explanation
Indices: 13010619--13010676 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
13010609 AAATCTGTGT
* *
13010619 AGGAAAAAGAATAAG-AAGAAA
1 AGGAAAATGAA-AAGAAACAAA
* **
13010640 AGAAAAATGGGAAGAAACAAA
1 AGGAAAATGAAAAGAAACAAA
13010661 AGGAAAATGAAAAGAA
1 AGGAAAATGAAAAGAA
13010677 GTCACGTGGC
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
20 3 0.11
21 25 0.89
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.05
Consensus pattern (21 bp):
AGGAAAATGAAAAGAAACAAA
Found at i:13012008 original size:16 final size:17
Alignment explanation
Indices: 13011977--13012009 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13011967 ACTACCAAAT
*
13011977 AAAAACACACATAAAGG
1 AAAAACACACAGAAAGG
13011994 AAAAACA-ACAGAAAGG
1 AAAAACACACAGAAAGG
13012010 CAACTACACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.67, C:0.15, G:0.15, T:0.03
Consensus pattern (17 bp):
AAAAACACACAGAAAGG
Found at i:13015710 original size:21 final size:22
Alignment explanation
Indices: 13015686--13015727 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
13015676 ATGATGTTCT
13015686 TATTTTTTTCTTTC-ATTTTTC
1 TATTTTTTTCTTTCTATTTTTC
13015707 TATTTTTTTCTTTCTATTTTT
1 TATTTTTTTCTTTCTATTTTT
13015728 ACACATTCGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (22 bp):
TATTTTTTTCTTTCTATTTTTC
Found at i:13016898 original size:20 final size:19
Alignment explanation
Indices: 13016875--13016931 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
13016865 GCAAAATAAT
*
13016875 AAGAAGAAAAGAAAAATGGG
1 AAGAAGAAAAGAAAAAT-GA
* *
13016895 AAGAAACAAAAGGAAAATGA
1 AAG-AAGAAAAGAAAAATGA
*
13016915 AAAAAGAAAAAGAAAAA
1 AAGAAG-AAAAGAAAAA
13016932 GAAGTAATAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
19 2 0.07
20 15 0.52
21 12 0.41
ACGTcount: A:0.74, C:0.02, G:0.21, T:0.04
Consensus pattern (19 bp):
AAGAAGAAAAGAAAAATGA
Found at i:13018579 original size:12 final size:12
Alignment explanation
Indices: 13018544--13018584 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
13018534 ATTATTTTTC
13018544 TTTTCTTTC-AT
1 TTTTCTTTCTAT
13018555 TTTTCTATTTCTAT
1 TTTTC--TTTCTAT
13018569 TTTTCTTTCTAT
1 TTTTCTTTCTAT
13018581 TTTT
1 TTTT
13018585 AACACTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 5 0.19
12 11 0.41
13 4 0.15
14 7 0.26
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTCTAT
Found at i:13028702 original size:43 final size:43
Alignment explanation
Indices: 13028655--13028781 Score: 130
Period size: 43 Copynumber: 3.0 Consensus size: 43
13028645 GACACTGAGA
* * *
13028655 GGAACATTGTTTCCTAAAATTGAAAGTATGAGATTTATTG-TGT
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTAATTGAT-T
* * * * ** *
13028698 GGAACACTATTTCCTATTATTTAAAGTATGTGAACAAATGATT
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTAATTGATT
* *
13028741 GGAGCATTGTTTCCTAATATTGATAGTATGTGATTAATTGA
1 GGAACATTGTTTCCTAATATTGAAAGTATGTGATTAATTGA
13028782 GAGCATGATA
Statistics
Matches: 64, Mismatches: 19, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
43 63 0.98
44 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (43 bp):
GGAACATTGTTTCCTAATATTGAAAGTATGTGATTAATTGATT
Found at i:13029001 original size:27 final size:28
Alignment explanation
Indices: 13028970--13029025 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
13028960 TATTGAGGGG
* * *
13028970 ATTGGCAATCTTTATCGCGTTATT-GTT
1 ATTGGCAATCTCTACCGCATTATTCGTT
*
13028997 ATTGGCGATCTCTACCGCATTATTCGTT
1 ATTGGCAATCTCTACCGCATTATTCGTT
13029025 A
1 A
13029026 GTCGGTAGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.43
Consensus pattern (28 bp):
ATTGGCAATCTCTACCGCATTATTCGTT
Found at i:13030449 original size:25 final size:25
Alignment explanation
Indices: 13030408--13030456 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
13030398 ACGATGTCAT
13030408 TATTTTTCTTTTCTTTC-ATTTTTG
1 TATTTTTCTTTTCTTTCTATTTTTG
*
13030432 TATTTATTTTTTTCTTTCTATTTTT
1 TATTT-TTCTTTTCTTTCTATTTTT
13030457 TACACTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 11 0.50
26 6 0.27
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (25 bp):
TATTTTTCTTTTCTTTCTATTTTTG
Found at i:13032290 original size:134 final size:134
Alignment explanation
Indices: 13032050--13032308 Score: 389
Period size: 134 Copynumber: 1.9 Consensus size: 134
13032040 CAAAGGGAAG
* *
13032050 AAAATTAGTATGAGGTTTTTTCACGTCTTCATTGTCGTTATCATAAAAAAAATCTTTCTACTCAT
1 AAAATTAGTATGAGGTTTTATCACGTCTTCATTGTCGTCATCATAAAAAAAATCTTTCTACTCAT
13032115 CACATAATTGCATGCAAATAAAATTTTAAGAATAATTTTTCATTATTCAACAAAAATTAATCAAA
66 CACATAATTGCATGCAAATAAAATTTTAAGAATAATTTTTCATTATTCAACAAAAATTAATCAAA
13032180 TTAA
131 TTAA
* * *
13032184 AAAATTAGTATGAGGTTTTATCACCT-TCTCATTGTCGTCATCATCAAAAACAAGT-TTT-TCCT
1 AAAATTAGTATGAGGTTTTATCACGTCT-TCATTGTCGTCATCAT-AAAAA-AAATCTTTCTACT
* * **
13032246 CATCACTTAGTTGCATGCAAATAAAATTTTAAGAATAATTTTTCATTATTCAATGAAAATTAA
63 CATCACATAATTGCATGCAAATAAAATTTTAAGAATAATTTTTCATTATTCAACAAAAATTAA
13032309 AGAAACAGGA
Statistics
Matches: 113, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
133 1 0.01
134 101 0.89
135 8 0.07
136 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.38
Consensus pattern (134 bp):
AAAATTAGTATGAGGTTTTATCACGTCTTCATTGTCGTCATCATAAAAAAAATCTTTCTACTCAT
CACATAATTGCATGCAAATAAAATTTTAAGAATAATTTTTCATTATTCAACAAAAATTAATCAAA
TTAA
Found at i:13033013 original size:249 final size:249
Alignment explanation
Indices: 13032590--13033060 Score: 658
Period size: 249 Copynumber: 1.9 Consensus size: 249
13032580 TCTGTAGTAG
* * * * *
13032590 CCTCTTTACTCACTTTTTCTTTTCTCTTCATCATATTAACATCAACTAATAAACAGGAAAAGATG
1 CCTCGTTACTCACTTTTTCTTTTCTCTTAATCATATTAACATAAACAAATAAACAGAAAAAGATG
* * *
13032655 AAGAAATGAGAGAAAAGAATAAATAAATTTTAATGGGAGAAAAATTAAGTTTATTTGAGTGAGAG
66 AAGAAATGAGAGAAAAGAAGAAATAAATTTGAATGGGAGAAAAATTAAGTTTATTTGAGTGAGAA
* ** * * * *
13032720 GAGAGAATATATATAGGTTCATTTTGGCATTAAGTAAAGGCAAATGTCAATATATATAATTCTAA
131 GAGAGAATATATACAGGTTCATTTTAACAATAAGTAAAGGCAAATATAAATATATATAATGCTAA
*
13032785 GATGATGTCAATATATACATAAATATAACAGTTTAACTGAAGGTTTGGCAGCAA
196 GATGAAGTCAATATATACATAAATATAACAGTTTAACTGAAGGTTTGGCAGCAA
* * *
13032839 CCTCGTTACTCAC-TTTTCTTTT-TCCTTTAATCATCTTAACATAAACAAATAGAGAGAAAAAGA
1 CCTCGTTACTCACTTTTTCTTTTCT-C-TTAATCATATTAACATAAACAAATAAACAGAAAAAGA
* * *
13032902 TGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATTTGAGTGAG
64 TGAAGAAATGAGAGAAAAGAAGAAATAAATTTGAATGGGAGAAAAATTAAGTTTATTTGAGTGAG
* * * *
13032967 AAGAGAGAATATTTACAGGTTCATTTTAACAATGAGTAATGGCAAATATAAATATATATAGTGCT
129 AAGAGAGAATATATACAGGTTCATTTTAACAATAAGTAAAGGCAAATATAAATATATATAATGCT
* *
13033032 AAGATGAAGTCAATATATATATATATATA
194 AAGATGAAGTCAATATATACATAAATATA
13033061 TATATATATA
Statistics
Matches: 192, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
247 1 0.01
248 10 0.05
249 181 0.94
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.32
Consensus pattern (249 bp):
CCTCGTTACTCACTTTTTCTTTTCTCTTAATCATATTAACATAAACAAATAAACAGAAAAAGATG
AAGAAATGAGAGAAAAGAAGAAATAAATTTGAATGGGAGAAAAATTAAGTTTATTTGAGTGAGAA
GAGAGAATATATACAGGTTCATTTTAACAATAAGTAAAGGCAAATATAAATATATATAATGCTAA
GATGAAGTCAATATATACATAAATATAACAGTTTAACTGAAGGTTTGGCAGCAA
Found at i:13033051 original size:2 final size:2
Alignment explanation
Indices: 13033044--13033086 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
13033034 GATGAAGTCA
13033044 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13033086 A
1 A
13033087 AAGATTTAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13033505 original size:32 final size:34
Alignment explanation
Indices: 13033469--13033531 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
13033459 CATTTTGACA
13033469 CTAAG-TAATGGAAA-ATATAAATATATATAATG
1 CTAAGATAATGGAAATATATAAATATATATAATG
* * *
13033501 CTAAGATGATGTAAATATATATATATATATA
1 CTAAGATAATGGAAATATATAAATATATATA
13033532 TGAAGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 5 0.19
33 7 0.27
34 14 0.54
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (34 bp):
CTAAGATAATGGAAATATATAAATATATATAATG
Found at i:13034059 original size:14 final size:14
Alignment explanation
Indices: 13034040--13034068 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13034030 AATTAAGTTT
13034040 ATCTAAGTGAGAAG
1 ATCTAAGTGAGAAG
13034054 ATCTAAGTGAGAAG
1 ATCTAAGTGAGAAG
13034068 A
1 A
13034069 GAGAATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.28, T:0.21
Consensus pattern (14 bp):
ATCTAAGTGAGAAG
Found at i:13035852 original size:22 final size:22
Alignment explanation
Indices: 13035804--13035852 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
13035794 AAATGAGAGA
*
13035804 AGAGAAGAAATAAGTTTGTATG
1 AGAGAAGAAATAAGTTTATATG
* * *
13035826 GGAGAAGAATTAAGTTTATCTG
1 AGAGAAGAAATAAGTTTATATG
13035848 AGAGA
1 AGAGA
13035853 GAGGAGAGGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.02, G:0.29, T:0.27
Consensus pattern (22 bp):
AGAGAAGAAATAAGTTTATATG
Found at i:13036514 original size:251 final size:253
Alignment explanation
Indices: 13036086--13037003 Score: 1227
Period size: 251 Copynumber: 3.6 Consensus size: 253
13036076 TTTTTAGCAG
* * * * * *
13036086 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* * *
13036151 AAGAAAAGGGAGGAA-AGAAGAAAAAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
66 AAGAAAAGAGA-GAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
* * *
13036215 GGAGAAAATATATACAGGTTCATTTTGGCATTGAGTAAAGGCAAATGTCAATATATATAATTCTA
130 GGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTA
* *
13036280 AGATGATGTCAATATATA-A-ACATATATATAAAGGTTTAACTAAAGGTTTGGCAGTAA
195 AGATGATGTCAATATATATATACATATATATAAAGGTTTATCTAAAGGTTTGGCAGAAA
* * * *
13036337 CCTCGTTACTCAATTTTCCTTTTCCTTTAATCACCTTAACATAAACTAACCAGGAGAAAAAGATG
1 CCTCGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* * * * *
13036402 AAGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGAAGAAGAATTAAGTTTATTTGAGTGAGGG
66 AAGAAAAGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
* * *
13036467 GAGAGAATATATACAGGTTCAGTTTGACAGTGAGTAATGGCAAATGTCAATATATATAATGCTAA
131 GAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAA
* * * *
13036532 GATGATGTCAATATATATATATC-TTTATATAAAGCTTT-TCTAAAGGTTTGGTAGCAA
196 GATGATGTCAATATATATATA-CATATATATAAAGGTTTATCTAAAGGTTTGGCAGAAA
* * *
13036589 CCTTGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAAAATAAATTAACAAAGAGAAAAAGATG
1 CCTCGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* *
13036654 AAGAAAAGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT-GGACTGAGAG
66 AAGAAAAGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
*
13036718 GATAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAA
131 GAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAA
* * * *
13036783 GATGACGTCAAAAAAAAAAATATATATATATATATATATATAAAGGTTTATCTGAAGGTTTGACA
196 GATGATGTC----------A-ATATATATATACATATATATAAAGGTTTATCTAAAGGTTTGGCA
*
13036848 AAAA
250 GAAA
* * * * *
13036852 CCACATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAACGAGAAAAAGATG
1 CCTCGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
*
13036917 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
66 AAGAAAAGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
* * *
13036982 GATATAATATATAGAGGTTCAT
131 GAGAGAATATATACAGGTTCAT
13037004 ACTAACATTT
Statistics
Matches: 582, Mismatches: 67, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
250 3 0.01
251 261 0.45
252 126 0.22
253 14 0.02
254 1 0.00
261 1 0.00
262 24 0.04
263 124 0.21
264 28 0.05
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (253 bp):
CCTCGTTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
AAGAAAAGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
GAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCTAA
GATGATGTCAATATATATATACATATATATAAAGGTTTATCTAAAGGTTTGGCAGAAA
Found at i:13039957 original size:255 final size:252
Alignment explanation
Indices: 13039395--13040039 Score: 810
Period size: 255 Copynumber: 2.5 Consensus size: 252
13039385 AATAGCTTCT
* * * *
13039395 TTACTCACTTTTTCTTTTTCTTTCAACATATTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTACTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
* * * *
13039460 ATGAGAGAA-AAGAAGAAATAAATTTTAATGGGAGAAGAATTAAGTTTATTTGAGTGAGAGGAGA
66 ATGAGAGAAGAA-AAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGG
* * ** *
13039524 GAATATATACAAGTTCATTTTGGCATTGTGTAAAGGAAAAATGTCAATATATATTTTTCTAAGAT
130 GAATATATACAAGTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAATGCTAAGAT
* * *
13039589 TATGTCAATATATATACATATATATAAAGGTTTAACTGTAGGTTTGACAACAACCTCA
195 GATGTCAATATATATACATATATATAAAGGTTTAACTGAAAGTTTGACAACAACCTCA
* * * * * * *
13039647 TTACTCACTTTTCCATTTCCTTTAATAATCTTAACATAAACTAATAAAGAGAAAAAGATAAAGAA
1 TTACTCACTTTTCCTTTTACTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
* * * * *
13039712 TTGAGAGAAGAAAAGAAATAGGTTTGAATAGGAGAAGAATTAAGTGTATCTGAGTGAGATGAGGG
66 ATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGGG
* * * *
13039777 AATATATA-AAGGTTCTTTTTGACATTGAGTAATGG-AAAATTTCAATATTTATAATGCTAAGAT
131 AATATATACAA-GTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAATGCTAAGAT
* * * * ** * * *
13039840 GATGTCTATCTATCTATCTATCTATATATAAATGTTTATTTGAAAGTTTGGCAGCAACCTTA
195 GATGTCAATATATATA-C-A--TATATATAAAGGTTTAACTGAAAGTTTGACAACAACCTCA
*
13039902 TTACTCACTTTTCCTTTTACTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGATGAA
1 TTACTCACTTTTCCTTTTACTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
* * *
13039967 ATGAGAGAAGAGAAGAAATAAGTTTGAATGGGTGAAGAATTAAGTTTATCTGAGTGAGAGGATGG
66 ATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGGG
13040032 AATATATA
131 AATATATA
13040040 GAGGCTCATA
Statistics
Matches: 331, Mismatches: 56, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
251 37 0.11
252 137 0.41
253 3 0.01
255 154 0.47
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (252 bp):
TTACTCACTTTTCCTTTTACTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATGAAGAA
ATGAGAGAAGAAAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGGG
AATATATACAAGTTCATTTTGACATTGAGTAAAGGAAAAATGTCAATATATATAATGCTAAGATG
ATGTCAATATATATACATATATATAAAGGTTTAACTGAAAGTTTGACAACAACCTCA
Found at i:13040409 original size:27 final size:28
Alignment explanation
Indices: 13040379--13040431 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
13040369 TGATCACAGC
*
13040379 ATTTCTTTTCTTTTCTTTC-ATTTTTGT
1 ATTTCTTTTCTTTTCTATCTATTTTTGT
*
13040406 ATTTCTTTTTTTTTCTATCTATTTTT
1 ATTTCTTTTCTTTTCTATCTATTTTT
13040432 ACACTTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.75
Consensus pattern (28 bp):
ATTTCTTTTCTTTTCTATCTATTTTTGT
Found at i:13044650 original size:21 final size:22
Alignment explanation
Indices: 13044601--13044650 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 22
13044591 AATATTTTCA
*
13044601 AGAATTATCTTTTATTATTTTT
1 AGAATTATCTTTTAGTATTTTT
*
13044623 AG-GTTAT-TTTTAGGT-TTTTT
1 AGAATTATCTTTTA-GTATTTTT
13044643 AGAATTAT
1 AGAATTAT
13044651 AAATACCCCC
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
20 12 0.52
21 9 0.39
22 2 0.09
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (22 bp):
AGAATTATCTTTTAGTATTTTT
Found at i:13050877 original size:15 final size:16
Alignment explanation
Indices: 13050857--13050886 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13050847 TTATTTCGGT
13050857 TATTTA-TTTTATTTC
1 TATTTATTTTTATTTC
13050872 TATTTATTTTTATTT
1 TATTTATTTTTATTT
13050887 ATGGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TATTTATTTTTATTTC
Found at i:13052418 original size:16 final size:16
Alignment explanation
Indices: 13052397--13052427 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13052387 GTGAGGGGGA
13052397 ATTTGATAAATATTTC
1 ATTTGATAAATATTTC
*
13052413 ATTTGATTAATATTT
1 ATTTGATAAATATTT
13052428 TATCTAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (16 bp):
ATTTGATAAATATTTC
Found at i:13052642 original size:23 final size:23
Alignment explanation
Indices: 13052605--13052662 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
13052595 TCTGACGTGC
* *
13052605 ATCCAGTTAGTAGCTTCTAAAAG
1 ATCCAGTCAGCAGCTTCTAAAAG
*
13052628 ATCCAGTCAGCAGCTTCTAGAAG
1 ATCCAGTCAGCAGCTTCTAAAAG
* *
13052651 GTCTAGTCAGCA
1 ATCCAGTCAGCA
13052663 AGGATGGATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (23 bp):
ATCCAGTCAGCAGCTTCTAAAAG
Found at i:13052839 original size:7 final size:7
Alignment explanation
Indices: 13052827--13052851 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13052817 AGCTAGAAAA
13052827 TCATCCC
1 TCATCCC
13052834 TCATCCC
1 TCATCCC
13052841 TCATCCC
1 TCATCCC
13052848 TCAT
1 TCAT
13052852 TATTTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.52, G:0.00, T:0.32
Consensus pattern (7 bp):
TCATCCC
Found at i:13057192 original size:254 final size:250
Alignment explanation
Indices: 13056598--13057504 Score: 1177
Period size: 251 Copynumber: 3.6 Consensus size: 250
13056588 GATTTTGTAA
* * * * * * * *
13056598 CAACCTCTTTACTCACTTTTTCTTTTCCTTTCATCATTTTAACATCAACTCACACAGAT-AAAGA
1 CAACCTCATTACTCACTTTTCCTTTTCCTTTTATCATCTTAACATAAACTAACAAAG-TGAAAAA
* * * * * *
13056662 GATGAAGAAATGAGAGAAAAGAAGTAATAAATTTTAATGGGAGAAGAATTATGTTTATCTTAGTG
65 GATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTG
* * * * * * *
13056727 AGACGAGAGAATATTTACAGGTTCATTTTGGCATTCAATAAAGGCAAATGTCAATATATATAAAT
130 AGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATAT-AA-ATATATAAAT
* * * * *
13056792 -CTTAGATGATGTCAATCTATATACATATATATAAATGTTTAACTGAAGGTTTGGTAG
193 GCTAAGATGATGTCAATATATATATATATATATAAAGGTTTATCTGAAGGTTTGGTAG
* * * * *
13056849 CAACCACATTACTCACTTTTCCTTTTCCTTTAATCATCCTAACATAAACTAGCAAAGAGAAAAAG
1 CAACCTCATTACTCACTTTTCCTTTTCCTTTTATCATCTTAACATAAACTAACAAAGTGAAAAAG
13056914 ATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGA
66 ATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGA
13056979 GAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATACAATGC
131 GAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATA-AATGC
*
13057044 TAAGATGATGTCAATATTATATATATATATATATAAAGGTTTATCTGAAGGTTTGG-CG
195 TAAGATGATGTC-A-A-TATATATATATATATATAAAGGTTTATCTGAAGGTTTGGTAG
*
13057102 ACAACCTCATTACTCACTTTTCCTTTT-CTTTTAGTCATCTTAAAATAAACTAACAAAGTGAAAA
1 -CAACCTCATTACTCACTTTTCCTTTTCCTTTTA-TCATCTTAACATAAACTAACAAAGTGAAAA
*
13057166 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTCAGT
64 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
*
13057231 GAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAAT
129 GAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATA-AAT
**
13057296 GCTAAGATGATGTC---A-A-A-ATATATATATAAAGGTTTATCTGTTGGTTTGGTAG
193 GCTAAGATGATGTCAATATATATATATATATATAAAGGTTTATCTGAAGGTTTGGTAG
* *
13057348 CAACCTCATTACTCACTTTTCCTTTTCCTTTCCCTTTCATCATCTTAACATCAACTAACAAATTG
1 CAACCTCATTACTCACTTTTCCTTTTCC--T---TTT-ATCATCTTAACATAAACTAACAAAGTG
* * **
13057413 AAAAAGATGAAGAAATGAGAGAAGACAAGATATAAGTTTGAATGGGAGAAGAATTGCGTTTATCT
60 AAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCT
* ** *
13057478 GAGTGAGTGGAGAGGATATATACAGGT
125 AAGTGAGAAGAGAGAATATATACAGGT
13057505 GAATTGTGAT
Statistics
Matches: 586, Mismatches: 54, Indels: 32
0.87 0.08 0.05
Matches are distributed among these distances:
245 56 0.10
246 3 0.01
247 1 0.00
248 2 0.00
249 7 0.01
250 5 0.01
251 276 0.47
252 2 0.00
253 7 0.01
254 227 0.39
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (250 bp):
CAACCTCATTACTCACTTTTCCTTTTCCTTTTATCATCTTAACATAAACTAACAAAGTGAAAAAG
ATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGA
GAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATAAATGCT
AAGATGATGTCAATATATATATATATATATAAAGGTTTATCTGAAGGTTTGGTAG
Found at i:13058292 original size:41 final size:41
Alignment explanation
Indices: 13058235--13058330 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
13058225 GAATTTTATT
*
13058235 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCTACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
13058276 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
* *
13058317 TTGACAAAAATTCT
1 TTAACAAGAATTCT
13058331 CTACGAACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.38, C:0.28, G:0.05, T:0.29
Consensus pattern (41 bp):
TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
Found at i:13063803 original size:249 final size:248
Alignment explanation
Indices: 13063159--13064037 Score: 1185
Period size: 249 Copynumber: 3.5 Consensus size: 248
13063149 AAGGTTTTTT
* * * * * *
13063159 AGCAGCCTCTTTACTCACTTTT--TTTTCCTTTCATCATATTAACATCAACTAACAAAAACAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAACAAAGAGAAAA
* * * * * *
13063222 AGATGACGAAAAGGGAGAAAAGAAGAAAAAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* * * * * * *
13063287 GAGAGAAGAAAATATATATACAGGTTCATTTTGGCATTGAGTAAAGGCAAATGTTAATATATATC
131 GAGAGGAG-AGA-ATATATACAAGTTCATTTTGACATTGAGTAATGGCAAAT-ATAATATATATA
*
13063352 ATTCTAAGATGATGTCAATATATAAACATATATATATATATAGGTTTAACTGAAGGTTTGGC
193 ATGCTAAGATGATGTCAATATAT----ATATATATATA-A-AGGTTTAACTGAAGGTTTGGC
* *
13063414 AGCAACCTCATTACTCAATTTTCCTTTTCCTTTAATCAT-TTAACATAAACTAACAAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAACAAAGAGAAAA
* *
13063478 AGATGAAGAAATGAGAGAAGAGAAGAAATGAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
* * *
13063543 GAAAAGAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGAAAATATAATTATATATAAT
131 GAGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAATATAA-TATATATAAT
*
13063608 GCTAAGATGATGTCAATATATATATATATATAAAGGTTTAACTGAAGGTTTGAC
195 GCTAAGATGATGTCAATATATATATATATATAAAGGTTTAACTGAAGGTTTGGC
* * * * *
13063662 AACAACGTCATAACTCACTTTTCCTTTTCCTTT-AGTCATCTAAACGTAAACTAACAAAGAGAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCA-TCATCTTAACATAAACTAACAAAGAGAAA
13063726 AAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAG
65 AAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAG
* *
13063791 TGAGAGGAGAGAATATATACATGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAA
130 TGAGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAATAT-AATATATATAA
* * **
13063856 TGCTAAGATGATGTCTACATATATATATATATAAAGGTTTATTTGAAGGTTTGGC
194 TGCTAAGATGATGTCAATATATATATATATATAAAGGTTTAACTGAAGGTTTGGC
* * *
13063911 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACTTCAGCTAACAAAGA-AAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAACAAAGAGAAAA
* * * * *
13063975 AGATGAAGAAATTACAGAAGAGAAG-AATAAGTTTGATTGAGAGAAGAATTAAGTTTACCTGAG
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAG
13064038 AGGATAGAAT
Statistics
Matches: 560, Mismatches: 57, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
247 36 0.06
248 80 0.14
249 244 0.44
250 14 0.03
253 3 0.01
254 64 0.11
255 21 0.04
256 84 0.15
257 14 0.03
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.30
Consensus pattern (248 bp):
AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAACAAAGAGAAAA
AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGT
GAGAGGAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAATATAATATATATAATG
CTAAGATGATGTCAATATATATATATATATAAAGGTTTAACTGAAGGTTTGGC
Found at i:13064037 original size:22 final size:21
Alignment explanation
Indices: 13063993--13064048 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 21
13063983 AAATTACAGA
*
13063993 AGAGAAGAATAAGTTTGATTG
1 AGAGAAGAATAAGTTTGACTG
13064014 AGAGAAGAATTAAGTTT-ACCTG
1 AGAGAAGAA-TAAGTTTGA-CTG
13064036 AGAGGATAGAATA
1 AGA-GA-AGAATA
13064049 TATAGAGGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 10 0.33
22 12 0.40
23 4 0.13
24 4 0.13
ACGTcount: A:0.45, C:0.04, G:0.27, T:0.25
Consensus pattern (21 bp):
AGAGAAGAATAAGTTTGACTG
Found at i:13069860 original size:16 final size:17
Alignment explanation
Indices: 13069839--13069870 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
13069829 GATGATGTCA
13069839 TCATTTTTCT-TTTCTT
1 TCATTTTTCTATTTCTT
13069855 TCATTTTTCTATTTCT
1 TCATTTTTCTATTTCT
13069871 ATTTTTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.72
Consensus pattern (17 bp):
TCATTTTTCTATTTCTT
Found at i:13079896 original size:20 final size:20
Alignment explanation
Indices: 13079868--13079973 Score: 62
Period size: 20 Copynumber: 5.4 Consensus size: 20
13079858 CCACATCAGC
*
13079868 AAATGATTTTAAAATTATTA
1 AAATTATTTTAAAATTATTA
13079888 AAATTATTTTTTAAAA-TA-TA
1 AAATTA--TTTTAAAATTATTA
*
13079908 GAATT-TTTT-AAATTATT-
1 AAATTATTTTAAAATTATTA
*** * *
13079925 TTTTTAAATATAAAATTATTA
1 AAATT-ATTTTAAAATTATTA
*
13079946 AAATTATTTTTAAAA-TAATA
1 AAATTA-TTTTAAAATTATTA
13079966 AAATTATT
1 AAATTATT
13079974 AAATAATTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 19
0.67 0.14 0.20
Matches are distributed among these distances:
16 3 0.05
17 8 0.12
18 1 0.02
19 4 0.06
20 30 0.47
21 10 0.16
22 8 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
AAATTATTTTAAAATTATTA
Found at i:13079922 original size:29 final size:29
Alignment explanation
Indices: 13079877--13079976 Score: 148
Period size: 29 Copynumber: 3.4 Consensus size: 29
13079867 CAAATGATTT
13079877 TAAAATTATTAAAATTATTTTTTAAAATA
1 TAAAATTATTAAAATTATTTTTTAAAATA
* * * *
13079906 TAGAATTTTTTAAATTATTTTTTTAAATA
1 TAAAATTATTAAAATTATTTTTTAAAATA
13079935 TAAAATTATTAAAATTA-TTTTTAAAATAA
1 TAAAATTATTAAAATTATTTTTTAAAAT-A
13079964 TAAAATTATTAAA
1 TAAAATTATTAAA
13079977 TAATTTTAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
28 9 0.15
29 53 0.85
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TAAAATTATTAAAATTATTTTTTAAAATA
Found at i:13081297 original size:17 final size:17
Alignment explanation
Indices: 13081284--13081322 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
13081274 ATCAACACTA
13081284 CTAAATAAAAAACACAC
1 CTAAATAAAAAACACAC
13081301 CTAAATAAAAAACACAC
1 CTAAATAAAAAACACAC
13081318 CTAAA
1 CTAAA
13081323 GGAAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.64, C:0.23, G:0.00, T:0.13
Consensus pattern (17 bp):
CTAAATAAAAAACACAC
Found at i:13081328 original size:17 final size:17
Alignment explanation
Indices: 13081284--13081331 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
13081274 ATCAACACTA
*
13081284 CTAAATAAAAAACACAC
1 CTAAAGAAAAAACACAC
*
13081301 CTAAATAAAAAACACAC
1 CTAAAGAAAAAACACAC
*
13081318 CTAAAGGAAAAACA
1 CTAAAGAAAAAACA
13081332 ACAGAAAGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.65, C:0.21, G:0.04, T:0.10
Consensus pattern (17 bp):
CTAAAGAAAAAACACAC
Found at i:13082855 original size:13 final size:13
Alignment explanation
Indices: 13082839--13082863 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13082829 GAAGCAAAGG
13082839 GAAAAAGAAAAAA
1 GAAAAAGAAAAAA
13082852 GAAAAAGAAAAA
1 GAAAAAGAAAAA
13082864 GAGGTAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:13085723 original size:19 final size:20
Alignment explanation
Indices: 13085685--13085723 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
13085675 TTATTATTAT
*
13085685 TTTTTTCATTTTTATATTTA
1 TTTTTTCATTTCTATATTTA
*
13085705 TTTTTTC-TTTCTATTTTTA
1 TTTTTTCATTTCTATATTTA
13085724 AGACTTTCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTCATTTCTATATTTA
Found at i:13092320 original size:30 final size:29
Alignment explanation
Indices: 13092267--13092519 Score: 192
Period size: 29 Copynumber: 8.7 Consensus size: 29
13092257 TATAAGACCT
* * *
13092267 CGAAACTTTAAAAAAGTACTTTTTTACCC
1 CGAAACTTTCAAAAATTACATTTTTACCC
** *
13092296 TTAAACTTTCAAAAATTACATTTTTAACCT
1 CGAAACTTTCAAAAATTACATTTTT-ACCC
*
13092326 CGAAACTTTCAAAAATTACATTTTTGCCC
1 CGAAACTTTCAAAAATTACATTTTTACCC
* * *
13092355 CCAAAC-TTCAAAAAAATCCATTTTTAACCC
1 CGAAACTTTC-AAAAATTACATTTTT-ACCC
** *
13092385 TAAAAC-TTCAAAAGGTTACATTTTTACCC
1 CGAAACTTTCAAAA-ATTACATTTTTACCC
* * *
13092414 CTG-AACTTCCAAAAATTCCATTTTGACCC
1 C-GAAACTTTCAAAAATTACATTTTTACCC
*
13092443 CGAAACTTCCAAAAATTACA-TTTTACCAC
1 CGAAACTTTCAAAAATTACATTTTTACC-C
* * * * * *
13092472 CG-AACTTCCAAAAATTCCGCTTCTGACCT
1 CGAAACTTTCAAAAATTAC-ATTTTTACCC
*
13092501 CGAAACTTGCAAAAATTAC
1 CGAAACTTTCAAAAATTAC
13092520 CATTGTACCC
Statistics
Matches: 179, Mismatches: 34, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
28 25 0.14
29 85 0.47
30 69 0.39
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (29 bp):
CGAAACTTTCAAAAATTACATTTTTACCC
Found at i:13092361 original size:59 final size:59
Alignment explanation
Indices: 13092263--13092519 Score: 252
Period size: 59 Copynumber: 4.4 Consensus size: 59
13092253 GCCCTATAAG
* * * ** * *
13092263 ACCTCGAAACTTTAAAAAAGTACTTTTTTACCCTTAAACTTTCAAAAATTACATTTTTA
1 ACCTCGAAACTTTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTA
* * *
13092322 ACCTCGAAACTTTCAAAAATTACATTTTTGCCCCCAAACTTCAAAAAAATCCATTTTTA
1 ACCTCGAAACTTTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTA
* * ** *
13092381 ACC-CTAAAAC-TTCAAAAGGTTACATTTTTACCCCTGAACTTCCAAAAATTCCA-TTTTG
1 ACCTC-GAAACTTTCAAAA-ATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTA
* * * * ** * *
13092439 ACCCCGAAACTTCCAAAAATTACA-TTTTACCACCGAACTTCCAAAAATTCCGCTTCTG
1 ACCTCGAAACTTTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTA
*
13092497 ACCTCGAAACTTGCAAAAATTAC
1 ACCTCGAAACTTTCAAAAATTAC
13092520 CATTGTACCC
Statistics
Matches: 166, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
57 25 0.15
58 49 0.30
59 92 0.55
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.32
Consensus pattern (59 bp):
ACCTCGAAACTTTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATTCCATTTTTA
Found at i:13092685 original size:58 final size:55
Alignment explanation
Indices: 13092307--13092708 Score: 209
Period size: 58 Copynumber: 6.9 Consensus size: 55
13092297 TAAACTTTCA
* * * *
13092307 AAAATTACATTTTTAACCTCGAAACTTTCAAAAATTACATTTTTGCCCCCAAACTTCAA
1 AAAATTCCATTTTTAACC-CGAAA-TTTCAAAAATTACA-TTTTACCCCCGAACTTC-C
* * * * *
13092366 AAAAATCCATTTTTAACCCTAAAACTTCAAAAGGTTACATTTTTACCCCTGAACTTCC
1 AAAATTCCATTTTTAACCC-GAAATTTCAAAA-ATTACA-TTTTACCCCCGAACTTCC
* * * *
13092424 AAAAATTCCATTTTGACCCCGAAACTTCCAAAAATTACATTTTACCACCGAACTTCC
1 -AAAATTCCATTTTTAACCCGAAA-TTTCAAAAATTACATTTTACCCCCGAACTTCC
** * * * * * * *
13092481 AAAAATTCCGCTTCTGACCTCGAAACTTGCAAAAATTACCATTGTA-CCCAGGA-TGTCTA
1 -AAAATTCCATTTTTAACC-CGAAA-TTTCAAAAATTA-CATTTTACCCCCGAACT-TC-C
* * * * *
13092540 AAAACTT-CGTTTTTAACACCAAAACTTTCAAAAATTATCGTTTTACCCTCGGA-TGTCC
1 AAAA-TTCCATTTTTAAC-CCGAAA-TTTCAAAAATTA-CATTTTACCCCCGAACT-TCC
* * ** *
13092598 AGAAATTTCATTTTTGATCCCGATCTTTCCAAAAATTACCATTTTACCCCCGAACATCC
1 A-AAATTCCATTTTT-AACCCGAAATTT-CAAAAATTA-CATTTTACCCCCGAACTTCC
* * * *
13092657 AAAATTTCATTTTTAACCCTAAATTTTCCCAAAATTACCATTTGACCCCCGA
1 AAAATTCCATTTTTAACCCGAAA-TTT-CAAAAATTA-CATTTTACCCCCGA
13092709 GAGTCTAAAA
Statistics
Matches: 269, Mismatches: 57, Indels: 35
0.75 0.16 0.10
Matches are distributed among these distances:
57 35 0.13
58 116 0.43
59 116 0.43
60 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (55 bp):
AAAATTCCATTTTTAACCCGAAATTTCAAAAATTACATTTTACCCCCGAACTTCC
Found at i:13092729 original size:58 final size:57
Alignment explanation
Indices: 13092623--13092734 Score: 138
Period size: 58 Copynumber: 1.9 Consensus size: 57
13092613 GATCCCGATC
* *
13092623 TTTCCAAAAATTACCATTTTACCCCCGAACATCCAAAATTTCATTTTTAACCCTAAAT
1 TTTCCAAAAATTACCATTTGACCCCCGAACATCCAAAATTCCATTTTT-ACCCTAAAT
* * *
13092681 TTTCCCAAAATTACCATTTGACCCCCGAGA-GTCTAAAATTACCA-TTTTACCCTA
1 TTTCCAAAAATTACCATTTGACCCCCGA-ACATCCAAAATT-CCATTTTTACCCTA
13092735 GAGTATCCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
57 6 0.13
58 38 0.81
59 3 0.06
ACGTcount: A:0.34, C:0.29, G:0.04, T:0.33
Consensus pattern (57 bp):
TTTCCAAAAATTACCATTTGACCCCCGAACATCCAAAATTCCATTTTTACCCTAAAT
Found at i:13092746 original size:28 final size:28
Alignment explanation
Indices: 13092629--13092746 Score: 78
Period size: 28 Copynumber: 4.1 Consensus size: 28
13092619 GATCTTTCCA
* **
13092629 AAAATTACCATTTTACCCCCGAACATCC
1 AAAATTACCATTTTACCCCAGAGTATCC
* * * * *
13092657 AAAATT-TCATTTTTAACCCTAAATTTTCCC
1 AAAATTACCA-TTTT-ACCCCAGAGTAT-CC
* * *
13092687 AAAATTACCATTTGACCCCCGAG-AGTCT
1 AAAATTACCATTTTACCCCAGAGTA-TCC
*
13092715 AAAATTACCATTTTACCCTAGAGTATCC
1 AAAATTACCATTTTACCCCAGAGTATCC
13092743 AAAA
1 AAAA
13092747 AGTCTTTTTT
Statistics
Matches: 65, Mismatches: 19, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
27 2 0.03
28 37 0.57
29 13 0.20
30 11 0.17
31 2 0.03
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCAGAGTATCC
Found at i:13097719 original size:43 final size:43
Alignment explanation
Indices: 13097638--13097746 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
13097628 GACGTTGTGA
* * *
13097638 GGAACATTGTTTCATAATATTGAAAGCATATGACCGAATGAGT
1 GGAACATTGTTTCCTAATATTGAAAGCACATGACCGAATGAAT
* * * *
13097681 GTAACATTGTTTCCTAATATTGAAAGTACGTGATCGAATGAAT
1 GGAACATTGTTTCCTAATATTGAAAGCACATGACCGAATGAAT
* * *
13097724 GGAACACTATTTCCTAAAATTGA
1 GGAACATTGTTTCCTAATATTGA
13097747 TAATATGTGC
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (43 bp):
GGAACATTGTTTCCTAATATTGAAAGCACATGACCGAATGAAT
Found at i:13098474 original size:16 final size:16
Alignment explanation
Indices: 13098452--13098490 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
13098442 TAAGACTGTG
13098452 GTTTGGGATTG-TTTT
1 GTTTGGGATTGATTTT
13098467 GCTTTGGGATTGATTTT
1 G-TTTGGGATTGATTTT
13098484 GTTTGGG
1 GTTTGGG
13098491 GTTTTTACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 16 0.73
17 5 0.23
ACGTcount: A:0.08, C:0.03, G:0.36, T:0.54
Consensus pattern (16 bp):
GTTTGGGATTGATTTT
Found at i:13100951 original size:4 final size:4
Alignment explanation
Indices: 13100942--13101051 Score: 50
Period size: 4 Copynumber: 26.2 Consensus size: 4
13100932 AAATCTAATG
* *
13100942 ATAA ATAA ATAA ATAA ACAA AGAA GAT-A ATAACA ATAA ATGTAA ATTAA
1 ATAA ATAA ATAA ATAA ATAA ATAA -ATAA AT-A-A ATAA A--TAA A-TAA
*
13100991 AT-A ATAA AT-A ATAA ATAA CATGGAA ATAA AT-A ATAA CA-AG ATAA
1 ATAA ATAA ATAA ATAA ATAA -AT--AA ATAA ATAA ATAA -ATAA ATAA
* *
13101035 ATAA ACAA AAAA ATAA A
1 ATAA ATAA ATAA ATAA A
13101052 AATTAAATGC
Statistics
Matches: 83, Mismatches: 9, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
3 12 0.14
4 51 0.61
5 9 0.11
6 9 0.11
7 2 0.02
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:13101095 original size:73 final size:77
Alignment explanation
Indices: 13101018--13101162 Score: 185
Period size: 78 Copynumber: 1.9 Consensus size: 77
13101008 ACATGGAAAT
*
13101018 AAATAA-TAACAAGATAAATAAAC-A-AAAAAAT-AA-AAATTAAATGCTAAAATAAATAAAC-A
1 AAATAATTAACAA-ATAAATAAACAACAAAAAATCAATAAATTAAATGCGAAAATAAA-AAACTA
13101077 AATATAAACAATAA
64 AATATAAACAATAA
** *
13101091 AAATAATTGGCAAATAAATAAACAAACAAAAAATCAATAAATTAAATGCGAAAATAAACAACTAA
1 AAATAATTAACAAATAAATAAAC-AACAAAAAATCAATAAATTAAATGCGAAAATAAAAAACTAA
13101156 ATATAAA
65 ATATAAA
13101163 TAAATAATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
73 16 0.26
74 4 0.07
75 1 0.02
76 7 0.11
77 5 0.08
78 28 0.46
ACGTcount: A:0.68, C:0.08, G:0.04, T:0.19
Consensus pattern (77 bp):
AAATAATTAACAAATAAATAAACAACAAAAAATCAATAAATTAAATGCGAAAATAAAAAACTAAA
TATAAACAATAA
Found at i:13101195 original size:10 final size:10
Alignment explanation
Indices: 13101180--13101211 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
13101170 TAAAAAAGAA
13101180 GATGAACTCC
1 GATGAACTCC
*
13101190 GATGAACTTC
1 GATGAACTCC
13101200 GATGAACTCC
1 GATGAACTCC
13101210 GA
1 GA
13101212 CCAAACCCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (10 bp):
GATGAACTCC
Found at i:13102048 original size:45 final size:45
Alignment explanation
Indices: 13101896--13102522 Score: 573
Period size: 45 Copynumber: 13.8 Consensus size: 45
13101886 ATCTACTCCT
* * * * *
13101896 TGGATTTAGGGATAAAAGATTGGATTTGGTGACTTCAATCTACCAC-C
1 TGGA-TTAGGGGTAAAAGACTGGA--TGGTGGCTTCAATCTTCCCCTC
* * * * *
13101943 TGGATAAGCGGTAAAAGATTGGATGGTTGCTTC-ATCTACCCCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* * * *
13101987 TAGATTAGGGGTAAAAGACTGGATGGTGGCTTTAATCTTCCCTTT
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
*
13102032 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTGTCCCGTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCT-TCCCCTC
* * * *
13102078 TGGAATAGGGGTAAAAGACTAGATGGTTGCTTCAAT-TTGCCTCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTT-CCCCTC
* * * *
13102123 TCGATTAGAGGTAAAAGATTGGATGGTGGCTTCAAT-TTGCCTCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTT-CCCCTC
** * * * *
13102168 AAGATTAGGGGTAAAAGATTGGAT-TTCTGCTTCAATCTGCCCCTC
1 TGGATTAGGGGTAAAAGACTGGATGGT-GGCTTCAATCTTCCCCTC
* ** * *
13102213 TAGATTAGGGGTAAAAGACTATATGGTGGCTTCAATATGCCCCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* * * * *
13102258 TGGATTAGGGGTAAAAGATTGGATTGTTGCTTCAATCTACCCCTT
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* * * * * *
13102303 TGGATTAGGGGTACAACATTAGATGGTGGCTTCAAT-TTGTCTCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTT-CCCCTC
* * * * *
13102348 TAGATTAAGGGTAAAAGACTGGATGGTGACTTCAATCTGCCCCTT
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* * ** *
13102393 TGTATTAGGGGTAAAAGATTGGATTATGGCTTCAATCTACCCCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* *
13102438 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAGTCTACCCCTC
1 TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
* ** *
13102483 TGGATTAGAGGTAAAAGGTTGGATGTGGTGACTTCAATCT
1 TGGATTAGGGGTAAAAGACTGGA--TGGTGGCTTCAATCT
13102523 GTTTAATTTT
Statistics
Matches: 477, Mismatches: 92, Indels: 22
0.81 0.16 0.04
Matches are distributed among these distances:
43 8 0.02
44 39 0.08
45 356 0.75
46 57 0.12
47 17 0.04
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (45 bp):
TGGATTAGGGGTAAAAGACTGGATGGTGGCTTCAATCTTCCCCTC
Found at i:13102856 original size:145 final size:147
Alignment explanation
Indices: 13102643--13103074 Score: 381
Period size: 145 Copynumber: 3.0 Consensus size: 147
13102633 AAGGTGTTAG
* * * *** * * *
13102643 GTCCGTCGTTGTGGCTTGAACCTATCTCTCTTCAATTTTAAGGTATAAGATTTGCTGTTACGGAT
1 GTCCGTCGTTGTGGCTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATCCACCGTTGCGGCT
* * *
13102708 TCAATCTTCCCCTCTTC-GATTTTAAGGTGTAAGATTCGCCATTACAG-CTTTAATCTTTCCCTC
66 TCAATCTTTCCCTCTTCAG-TTTTAAGGTGTAAGATCCACCATT-CAGACTTTAATCTTTCCCTC
13102771 TTCTATTTTAGGGCATT-A
129 TTCTATTTTAGGGCATTAA
* * * * *
13102789 -TCCTTCGTTGTGGCTTCAATCTATCGCTCTTCAATTTTAAGGTGTTAGGTCCACCGTTGCGGCT
1 GTCCGTCGTTGTGGCTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATCCACCGTTGCGGCT
* * * * * * * **
13102853 TCAA-CTTATCCATCTTTATTTTTAATGTGTTAGATCCATCGTTGTGACTTTAATCTTTCCCTCT
66 TCAATCTT-TCCCTCTTCAGTTTTAAGGTGTAAGATCCACCATTCAGACTTTAATCTTTCCCTCT
**
13102917 TCTATTTTAGGGTGTTAA
130 TCTATTTTAGGGCATTAA
* * *** * **
13102935 GTCCGCCATTGCAACTTCAACCTATCCCTCTTCAGTTTTAAGGTGTAAGATCCACCGTTGTAGCT
1 GTCCGTCGTTGTGGCTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATCCACCGTTGCGGCT
* * * * * * *
13103000 TCAATCTTTCCCTCTTCAGTTTTAGGGTGTTAGGTCCACCGTTGCAG-CTTCAACCTATCCCTCT
66 TCAATCTTTCCCTCTTCAGTTTTAAGGTGTAAGATCCACCATT-CAGACTTTAATCTTTCCCTCT
* *
13103064 TCAACTTTAGG
130 TCTATTTTAGG
13103075 ATTTGGTGTG
Statistics
Matches: 225, Mismatches: 54, Indels: 13
0.77 0.18 0.04
Matches are distributed among these distances:
144 4 0.02
145 110 0.49
146 1 0.00
147 106 0.47
148 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.40
Consensus pattern (147 bp):
GTCCGTCGTTGTGGCTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATCCACCGTTGCGGCT
TCAATCTTTCCCTCTTCAGTTTTAAGGTGTAAGATCCACCATTCAGACTTTAATCTTTCCCTCTT
CTATTTTAGGGCATTAA
Found at i:13102917 original size:98 final size:98
Alignment explanation
Indices: 13102608--13103066 Score: 378
Period size: 98 Copynumber: 4.7 Consensus size: 98
13102598 GTCGTTGCAG
* * ** ** * *
13102608 CTTCAA-CTTATCTCTCTTCAATTTTAAGGTGTTAGGTCCGTCGTTGTGGCTTGAACCTATCTCT
1 CTTCAATCTT-TCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCT
* * *
13102672 CTTCAATTTTAAGGTATAAGAT--TTGCTGTTACG-GA
65 CTTCAGTTTTAAGGTGTAAGATCCAT-C-GTT--GTGA
* * * * * * * * * * * *
13102707 -TTCAATCTTCCCCTCTTCGATTTTAAGGTGTAAGATTCGCCATTACAGCTTTAATCTTTCCCTC
1 CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTC
* ** * *
13102771 TTCTA-TTTT-AGG-GCATTATCCTTCGTTGTGG
66 TTC-AGTTTTAAGGTGTAAGATCCATCGTTGTGA
* * * * * *
13102802 CTTCAATCTATCGCTCTTCAATTTTAAGGTGTTAGGTCCACCGTTGCGGCTTCAACTTATCCATC
1 CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTC
* * * *
13102867 TTTATTTTTAATGTGTTAGATCCATCGTTGTGA
66 TTCAGTTTTAAGGTGTAAGATCCATCGTTGTGA
* * * * * *
13102900 CTTTAATCTTTCCCTCTTCTATTTTAGGGTGTTAAGTCCGCCATTGCAACTTCAACCTATCCCTC
1 CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTC
*
13102965 TTCAGTTTTAAGGTGTAAGATCCACCGTTGT-A
66 TTCAGTTTTAAGGTGTAAGATCCATCGTTGTGA
*
13102997 GCTTCAATCTTTCCCTCTTCAGTTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCT
1 -CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCT
13103062 CTTCA
65 CTTCA
13103067 ACTTTAGGAT
Statistics
Matches: 282, Mismatches: 68, Indels: 21
0.76 0.18 0.06
Matches are distributed among these distances:
94 1 0.00
95 2 0.01
96 60 0.21
97 7 0.02
98 208 0.74
99 4 0.01
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.41
Consensus pattern (98 bp):
CTTCAATCTTTCCCTCTTCAATTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTC
TTCAGTTTTAAGGTGTAAGATCCATCGTTGTGA
Found at i:13103074 original size:49 final size:49
Alignment explanation
Indices: 13102580--13103072 Score: 310
Period size: 49 Copynumber: 10.1 Consensus size: 49
13102570 CCCTCTTTGG
* * ** * *
13102580 TTTTAGGGTATTAGGTCCGTCGTTGCAGCTTCAACTTATCTCTCTTCAA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
** ** * *
13102629 TTTTAAGGTGTTAGGTCCGTCGTTGTGGCTTGAACCTATCTCTCTTCAA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
* * * *** * * * * * *
13102678 TTTTAAGGTATAAGATTTGCTGTTACGGATTCAATCT-TCCCCTCTTCGA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTAT-CCCTCTTCAA
* * * * * * * * * *
13102727 TTTTAAGGTGTAAGATTCGCCATTACAGCTTTAATCTTTCCCTCTTCTA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
* ** ** ** * *
13102776 TTTTAGGGCATTA--TCCTTCGTTGTGGCTTCAATCTATCGCTCTTCAA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
* * * * *
13102823 TTTTAAGGTGTTAGGTCCACCGTTGCGGCTTCAACTTATCCATCTTTAT
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
* * * * * * * *
13102872 TTTTAATGTGTTAGATCCATCGTTG-TGACTTTAATCTTTCCCTCTTCTA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAG-CTTCAACCTATCCCTCTTCAA
* * * * * *
13102921 TTTTAGGGTGTTAAGTCCGCCATTGCAACTTCAACCTATCCCTCTTCAG
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
* * * * * *
13102970 TTTTAAGGTGTAAGATCCACCGTTGTAGCTTCAATCTTTCCCTCTTCAG
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
*
13103019 TTTTAGGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
1 TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
*
13103068 CTTTA
1 TTTTA
13103073 GGATTTGGTG
Statistics
Matches: 339, Mismatches: 99, Indels: 12
0.75 0.22 0.03
Matches are distributed among these distances:
47 33 0.10
48 2 0.01
49 303 0.89
50 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (49 bp):
TTTTAAGGTGTTAGGTCCACCGTTGCAGCTTCAACCTATCCCTCTTCAA
Found at i:13108087 original size:7 final size:6
Alignment explanation
Indices: 13108062--13108103 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
13108052 ATATGTGAGG
*
13108062 ATTTTT ATTTTT A-TTTT ATTTATT ATTTATT ATTATT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTT-TT ATTT-TT ATTTTT ATTTT
13108104 ATGAAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 5 0.16
6 15 0.47
7 12 0.38
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (6 bp):
ATTTTT
Found at i:13110408 original size:26 final size:26
Alignment explanation
Indices: 13110347--13110417 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
13110337 AACATACATA
*
13110347 AAATGAAAATAAAATGCAAAGCAACAT
1 AAAT-AAAATAAAATGCAAAGCAACAC
* * *
13110374 ATATAAAATAAAATGCAAAGGATCAC
1 AAATAAAATAAAATGCAAAGCAACAC
* *
13110400 AAATTAAATTAAAT-CAAA
1 AAATAAAATAAAATGCAAA
13110418 TTTTAAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 4 0.11
26 30 0.81
27 3 0.08
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.20
Consensus pattern (26 bp):
AAATAAAATAAAATGCAAAGCAACAC
Found at i:13111956 original size:16 final size:15
Alignment explanation
Indices: 13111928--13111958 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
13111918 GTTTCAAAAG
13111928 AAAAGAAAAGAAATA
1 AAAAGAAAAGAAATA
13111943 AAAAGAAGAAGAAATA
1 AAAAGAA-AAGAAATA
13111959 CAAATACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (15 bp):
AAAAGAAAAGAAATA
Found at i:13115641 original size:52 final size:52
Alignment explanation
Indices: 13115563--13115755 Score: 305
Period size: 52 Copynumber: 3.7 Consensus size: 52
13115553 AATGAAAAAA
*
13115563 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACAGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
*
13115615 AGGTCCGATGACTTTGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* ** *
13115667 AGGTCCGTTGACTATGTGTCATCGTGAGTATATGAATCCTGCATGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * *
13115719 AGGTCCGGTGGCTATGTGTTATCGTGAGTATATGAAT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAAT
13115756 GAAATGAAAT
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 131 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:13122355 original size:253 final size:250
Alignment explanation
Indices: 13121970--13122821 Score: 1012
Period size: 253 Copynumber: 3.4 Consensus size: 250
13121960 TAATGGAGAC
* * * * * *
13121970 AACTGAAGGATTT-GTAGCAGCCTCTTTACTCACTTTTC-TTTTCCCTTCATCATATTAACATCA
1 AACTGAAGG-TTTGGCAGCAACCTCATTACTCACTTTTCTTTTTCCTTTAATCATATTAACATAA
* * * *
13122033 ACTAAC-AA-AG----AGATGAAGAAATGAGAGAAAAGAATAAATAAGTTTTAATGGGAGAAAAA
65 ACAAACAAAGAGAAAAAGATGAAAAAATGAGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAA
*
13122092 TTAAGTTTATTTGAGTGAGAGGAGAGAATATATATAGTTTCATTTTGGCATTATGTAAAGGCAAA
130 TTAAGTTTATTTGAGTGAGAGGAGAGAATATATATAGGTTCATTTTGGCATTA-GTAAAGGCAAA
*
13122157 TGTCAATATATATAATTCTAAGATGATGTCAATATATATACATATATATAACGGTTT
194 TGTCAATATATATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTT
*
13122214 AACTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCTTTTTCCTTTAATCATCTTAACATAAA
1 AACTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCTTTTTCCTTTAATCATATTAACATAAA
* *
13122279 CAAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAGAAGAAATAAGTTTGAATGGGAGAAGA
66 CAAACAAAGAGAAAAAGATGAAAAAATGAGAGAA-A-AGAAGAAATAAGTTTTAATGGGAGAAGA
* * * * * *
13122344 ATTAAGTTTATTTGAGTGAGAAGAGAGAATATTTACAGGTTCGTTTTGACATTGAGTAATGGCAA
129 ATTAAGTTTATTTGAGTGAGAGGAGAGAATATATATAGGTTCATTTTGGCATT-AGTAAAGGCAA
* * * * * *
13122409 ATATAAATATATATAATGCTAAGATAAAGTCAATATATATATATATATATATATAAAGGTTT
193 ATGTCAATATATATAATTCTAAGATGATGTC---A-ATATATATACATATATATAAAGGTTT
* * * * * * * *
13122471 AATTGAAGGTTTTGTAGC-AGCTTATTTACACACTTTT-TCTTTTCCTTTCATCATATTAACATC
1 AACTGAAGGTTTGGCAGCAACCTCA-TTACTCACTTTTCT-TTTTCCTTTAATCATATTAACATA
* * * *
13122534 AACTAACAAAGAGAAAAAGTTGAAAAAATGAGAGAAAAGATGAAATAAGTTTTAGTGGGAGAAGA
64 AACAAACAAAGAGAAAAAGATGAAAAAATGAGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGA
** * **
13122599 ATTAAGTTTATCAGAGTAAGAGGAGAGAAATATATATAGGTTCATTTTGGCACTCCGTAAAGGCA
129 ATTAAGTTTATTTGAGTGAGAGGAGAG-AATATATATAGGTTCATTTTGGCA-TTAGTAAAGGCA
* *
13122664 AATGTCAATATATATATTTCTAAGATGATGTCAATA-A-ATACGTATATATAAAGGTTT
192 AATGTCAATATATATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTT
* * *
13122721 AACTGAACGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAA
1 AACTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCTTTTTCCTTTAATCATATTAACATAAA
*
13122786 CAAAAAAAGAGAGAAAAAGA-GAAAAAGATGA-AGAAA
66 C-AAACAA-AGAGAAAAAGATGAAAAA-ATGAGAGAAA
13122822 TGAGAGAAGA
Statistics
Matches: 511, Mismatches: 73, Indels: 41
0.82 0.12 0.07
Matches are distributed among these distances:
243 3 0.01
244 31 0.06
245 26 0.05
246 2 0.00
247 2 0.00
250 67 0.13
251 39 0.08
252 18 0.04
253 108 0.21
254 1 0.00
255 48 0.09
256 61 0.12
257 105 0.21
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (250 bp):
AACTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCTTTTTCCTTTAATCATATTAACATAAA
CAAACAAAGAGAAAAAGATGAAAAAATGAGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAAT
TAAGTTTATTTGAGTGAGAGGAGAGAATATATATAGGTTCATTTTGGCATTAGTAAAGGCAAATG
TCAATATATATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTT
Found at i:13122909 original size:488 final size:493
Alignment explanation
Indices: 13121973--13122944 Score: 1384
Period size: 488 Copynumber: 2.0 Consensus size: 493
13121963 TGGAGACAAC
* *
13121973 TGAAGGATTTGTAGCAGCCTCTTTACTCACTTTTCTTTTCCCTTCATCATATTAACATCAACTAA
1 TGAAGGATTTGTAGCAGCCTATTTACACACTTTTCTTTTCCCTTCATCATATTAACATCAACTAA
* *
13122038 CAAAGAGATGAAGAAATGAGAGAAAAGAATAAATAAGTTTTAATGGGAGAAAAATTAAGTTTATT
66 CAAAGAGATGAAAAAATGAGAGAAAAGAATAAATAAGTTTTAATGGGAGAAAAATTAAGTTTATC
* * * * *
13122103 TGAGTGAGAGGAGAGAATATATATAGTTTCATTTTGGCATTATGTAAAGGCAAATGTCAATATAT
131 AGAGTAAGAGGAGAGAATATATATAGGTTCATTTTGGCACTACGTAAAGGCAAATGTCAATATAT
* *
13122168 ATAATTCTAAGATGATGTCAATATATATACATATATATAACGGTTTAACTGAAGGTTTGGCAGCA
196 ATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAACGTTTGGCAGCA
*
13122233 ACCTCATTACTCACTTTTCTTTTTCCTTTAATCATCTTAACATAAACAAACAAAGAGAAAAAGAT
261 ACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACAAACAAAGAG---AAGAT
* *
13122298 GAAGAAATGAGAGAAGAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATTTGAGTGA
323 GAAGAAATGAGAGAAAAGAGAAG-AATAA--TTGAA--GGAGAAGAATTAAGTTTATTAGAGTGA
** *
13122363 GAAGAGAGAATATTTACAGGTTCGTTTTGACATTGAGTAATGGCAAATATAAATATATATAATGC
383 GAAGAGAGAATATTTACAGGTTAATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGC
*
13122428 TAAGATAAAGTCAATATATATATATATATATATATAAAGGTTTAAT
448 TAAGATAAAGTAAATATATATATATATATATATATAAAGGTTTAAT
* * *
13122474 TGAAGGTTTTGTAGCAGCTTATTTACACACTTTTTCTTTTCCTTTCATCATATTAACATCAACTA
1 TGAAGGATTTGTAGCAGCCTATTTACACAC-TTTTCTTTTCCCTTCATCATATTAACATCAACTA
* *
13122539 ACAAAGAGAAAAAGTTGAAAAAATGAGAGAAAAG-ATGAAATAAGTTTTAGTGGGAGAAGAATTA
65 ACAAAGAG----A--TGAAAAAATGAGAGAAAAGAAT-AAATAAGTTTTAATGGGAGAAAAATTA
*
13122603 AGTTTATCAGAGTAAGAGGAGAGAAATATATATAGGTTCATTTTGGCACTCCGTAAAGGCAAATG
123 AGTTTATCAGAGTAAGAGGAGAG-AATATATATAGGTTCATTTTGGCACTACGTAAAGGCAAATG
* *
13122668 TCAATATATATATTTCTAAGATGATGTCAATA-A-ATACGTATATATAAAGGTTTAACTGAACGT
187 TCAATATATATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAACGT
13122731 TTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACAAA-AAA-A
252 TTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACAAACAAAGA
13122794 G-AGA-GAA-AAA-GAGA-AAAAGATGAAG-A-AA-TG-A-GAGAAGAATTAAGTTTATCTAG-G
317 GAAGATGAAGAAATGAGAGAAAAGA-GAAGAATAATTGAAGGAGAAGAATTAAGTTTAT-TAGAG
*
13122848 TGAGAAGAGAGAAT-TTATATAGGTTAATTTTGACATTGAGTAATGGAAAATATAAATATATATA
380 TGAGAAGAGAGAATATT-TACAGGTTAATTTTGACATTGAGTAATGGAAAATATAAATATATATA
* *
13122912 ATGCTAAGATGACGTAAATATATATATATATAT
444 ATGCTAAGATAAAGTAAATATATATATATATAT
13122945 GAAGTTTTAT
Statistics
Matches: 430, Mismatches: 29, Indels: 37
0.87 0.06 0.07
Matches are distributed among these distances:
487 2 0.00
488 106 0.25
489 2 0.00
491 1 0.00
492 2 0.00
495 2 0.00
496 1 0.00
497 5 0.01
498 8 0.02
499 3 0.01
500 3 0.01
501 29 0.07
502 41 0.10
505 2 0.00
506 4 0.01
507 87 0.20
508 64 0.15
509 68 0.16
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (493 bp):
TGAAGGATTTGTAGCAGCCTATTTACACACTTTTCTTTTCCCTTCATCATATTAACATCAACTAA
CAAAGAGATGAAAAAATGAGAGAAAAGAATAAATAAGTTTTAATGGGAGAAAAATTAAGTTTATC
AGAGTAAGAGGAGAGAATATATATAGGTTCATTTTGGCACTACGTAAAGGCAAATGTCAATATAT
ATAATTCTAAGATGATGTCAATATATATACATATATATAAAGGTTTAACTGAACGTTTGGCAGCA
ACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACAAACAAAGAGAAGATGAA
GAAATGAGAGAAAAGAGAAGAATAATTGAAGGAGAAGAATTAAGTTTATTAGAGTGAGAAGAGAG
AATATTTACAGGTTAATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCTAAGATAA
AGTAAATATATATATATATATATATATAAAGGTTTAAT
Found at i:13124839 original size:612 final size:612
Alignment explanation
Indices: 13122820--13124961 Score: 2850
Period size: 612 Copynumber: 3.5 Consensus size: 612
13122810 AAGATGAAGA
* * * * * *
13122820 AATGAGAGAAGAATTAAGTTTATCTAG-GTGAGAAGAGAGAATTTATATAGGTTAATTTTGACAT
1 AATGGGAGAAGAATTAAGTTTATCTTGAGTGAGAAGAGAAAATATATACAGGTTCATTTTGACAT
* *
13122884 TGAGTAATGGAAAATATAAATATATATAATGCTAAGATGACGT-AA-ATATATATATATATAT-G
66 TGAGTAATGGCAAATATAAATATATATAATGCTAAGATGACGTCAATATATATATATATATATAA
* *
13122946 AAGTTTTATCTGAAGGCTTGGCAGCAACCTCATTACTCA-TGTTTCCTTTT-TTTTCATCATCTT
131 AAG-TTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACT-TTTCCTTTTCCTTTCATCATCTT
*
13123009 AACATCAACTAACAAATT-AATAAAGATGAAGAAATGAAAGAAG-GTAAGAAATAAGTTTGAATG
194 AACATCAACTAACAAATTGAA-AAAGATGAAGAAATGAGAGAAGAG-AAGAAATAAGTTTGAATG
* * *
13123072 GAAGAAGAATTAAGTTTATCTAAGTGAGAGGAGAGGATATATACATGTCAATTGT-CATTCGTTA
257 GGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAGGATATATACAGGTCAATTGTGC-TTCGTTA
*
13123136 TCACCAAAAGATCTAGAAATCATGTTCAACCTAAAGATGCAGATTAGAAACATATAATTAAAATT
321 TCACCAAAAGATCTAGAAATCATGTTCAACCTAAAGACGCAGATTAGAAACATATAATTAAAA-T
* *
13123201 CATCTTTGTTATAAACATGAATTAAGAATGAATTTTGGATGATATTCCTCATAAATTTAAACCTA
385 C-TCTTTGTTATAAACATGAATTAAGAAAGAATTTTGGATGATATTCATCATAAATTTAAACCTA
* * *
13123266 TGTCTTGGTGGTAGGCTTGGTAATGATGGAGATTGGCTAATGGAGACAACTGAAGGTTTTTTAGC
449 TTTCTTGGTGGTAGGCTTGGAAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGC
** *
13123331 AGCCTCTTTAAACACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGA
514 AGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGA
*
13123396 TGAAGAAATGGGAGAAAAGAAGAAATAAA-TTTT
579 TGAAGAAATGGGAGAAAAGAAGAAAAAAAGTTTT
*
13123429 AATGGGAGAAGAATTAAGTTTATC-TGAGTGAGAAGATCTGAGTGTGACGAGAGAATATATGCAG
1 AATGGGAGAAGAATTAAGTTTATCTTGAGT--G-AGA----A----GA-GA-A-AATATATACAG
* * *
13123493 GTTCATTTTGACATTGAGTAATGACAAATATAAATATATATAATGCTATGATGATGTCAATATAT
52 GTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGACGTCAATATAT
* * * *
13123558 ATGTATATATAAATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTTATTACTCACATTTCCTTTT
117 A--TATATATATATAAAAGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTT
*
13123623 CCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAGAAA
180 CCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAA
* *
13123688 TAAGTTTGAATCGGAAAAGAATTAAGTTT-TCTGAGTG-GTAGGAGAGGATATATACAGGTCAAT
245 TAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG-AGGAGAGGATATATACAGGTCAAT
* * * * *
13123751 TATGATTCGTTATCACCAAAAGA--T-GAAATCGTGTTGAACCT-AAGACACAGATTAGAAACAT
309 TGTGCTTCGTTATCACCAAAAGATCTAGAAATCATGTTCAACCTAAAGACGCAGATTAGAAACAT
* * * *
13123812 ATGATT-AAA---CTTTGTTATAATCATAAATTAAGAAAGAATTTTGGATGATATTCGTCATAAA
374 ATAATTAAAATCTCTTTGTTATAAACATGAATTAAGAAAGAATTTTGGATGATATTCATCATAAA
* * * *
13123873 TTTAAACTTATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTGGGTAATGGAAACAACTGAAG
439 TTTAAACCTATTTCTTGGTGGTAGGCTTGGAAATGATGGAGATTGGGTAATGGAGACAACTGAAG
*
13123938 GTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTTCTTTTCCTTTCATCATACTAACATCAACT
504 GTTTTTTAGCAGCCTCTTTACTCA------CTTTTTCTTTTCCTTTCATCATATTAACATCAACT
* * * *
13124003 AACAAAAAGAAAACGATAAAGAAATGGGAGAAAAGAAG-AAATAAGCTTT
563 AACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAAAAAAGTTTT
* * *
13124052 AATAGGAGAAGAATTAAGTTTA-CTTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACAT
1 AATGGGAGAAGAATTAAGTTTATCTTGAGTGAGAAGAGAAAATATATACAGGTTCATTTTGACAT
** * * *
13124116 TGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATATCAATATTTATGTATATATACAA
66 TGAGTAATGGCAAATATAAATATATATAATGCTAAGATGACGTCAATATATATATATATATATAA
* * * * * * *
13124181 AGGTTTATCTGAACGTTTGACAGCAATCTTATTACTGACCTTTCCTTTTCCTTTCATCATCTTAA
131 AAGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAA
*
13124246 CATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGGATGGGAG
196 CATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAG
13124311 AAGAATTAAGTTTATCTGAGTGAGAGGAGAGGATATATACAGGTCAATTGTGCTTCGTTATCACC
261 AAGAATTAAGTTTATCTGAGTGAGAGGAGAGGATATATACAGGTCAATTGTGCTTCGTTATCACC
*
13124376 AAAAGATCTAGAAATCATGATT-AACCTAAAGACGCAAATTAGAAACATATAATTAAAATCCGTC
326 AAAAGATCTAGAAATCATG-TTCAACCTAAAGACGCAGATTAGAAACATATAATTAAAAT-C-TC
* * *
13124440 TTTGCTATAAACCTGAATTAAGAAAGAATTTTGGATGATATTCATCATAAATTT-ATCCTATTTC
388 TTTGTTATAAACATGAATTAAGAAAGAATTTTGGATGATATTCATCATAAATTTAAACCTATTTC
** * *
13124504 TTGGTGGTAGGCTTGGAAATGATGGAGATTGGGTAATGCTGACAACTTAAGGGTTTTTAGCAGCC
453 TTGGTGGTAGGCTTGGAAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCC
*
13124569 TCTTTACTCACTTTTTCTTTTCCTTTTATCATATTAACATCAACTAACAAAAAGAAAAAGATGAA
518 TCTTTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATGAA
* *
13124634 GAAAAGGGAGGAAAGAAGAAAAAAAGTTTT
583 GAAATGGGAGAAAAGAAGAAAAAAAGTTTT
* * *
13124664 AATGGGAGAAGAATTCAGTTTATCTT-AGTGAGAGGAGAAAATATATACAGGTTCATTTTGGCAT
1 AATGGGAGAAGAATTAAGTTTATCTTGAGTGAGAAGAGAAAATATATACAGGTTCATTTTGACAT
* * * * * *
13124728 TGAGTAAAGGCAAATTTCAATATATATAATTCTAAGATGACGTCAATATATAAACATATATATAA
66 TGAGTAATGGCAAATATAAATATATATAATGCTAAGATGACGTCAATATATATATATATATATAA
* * * *
13124793 AAGTTTAACTAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCTTCTTAA
131 AAGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAA
* * *** *
13124858 CATAAACTAACCAGGAGAAAAAGATGAAGAAATGAGAGAAGAG-AGAATAATAAGTTTAAATGGG
196 CATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGAGAAG-A-AATAAGTTTGAATGGG
13124922 AGAAGAATTAAG--TATCTGAGTGAGA-GATGAGGATAATATA
259 AGAAGAATTAAGTTTATCTGAGTGAGAGGA-GAGGAT-ATATA
13124962 TACAGGTTCA
Statistics
Matches: 1348, Mismatches: 132, Indels: 103
0.85 0.08 0.07
Matches are distributed among these distances:
607 144 0.11
608 54 0.04
609 99 0.07
610 3 0.00
611 104 0.08
612 245 0.18
613 32 0.02
616 2 0.00
617 205 0.15
618 50 0.04
620 5 0.00
621 3 0.00
622 8 0.01
623 181 0.13
624 17 0.01
625 6 0.00
626 1 0.00
627 102 0.08
628 84 0.06
629 3 0.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (612 bp):
AATGGGAGAAGAATTAAGTTTATCTTGAGTGAGAAGAGAAAATATATACAGGTTCATTTTGACAT
TGAGTAATGGCAAATATAAATATATATAATGCTAAGATGACGTCAATATATATATATATATATAA
AAGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAA
CATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAG
AAGAATTAAGTTTATCTGAGTGAGAGGAGAGGATATATACAGGTCAATTGTGCTTCGTTATCACC
AAAAGATCTAGAAATCATGTTCAACCTAAAGACGCAGATTAGAAACATATAATTAAAATCTCTTT
GTTATAAACATGAATTAAGAAAGAATTTTGGATGATATTCATCATAAATTTAAACCTATTTCTTG
GTGGTAGGCTTGGAAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCT
TTACTCACTTTTTCTTTTCCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
ATGGGAGAAAAGAAGAAAAAAAGTTTT
Found at i:13125367 original size:255 final size:257
Alignment explanation
Indices: 13124567--13125492 Score: 1208
Period size: 255 Copynumber: 3.6 Consensus size: 257
13124557 TTTTTAGCAG
* * * * * *
13124567 CCTCTTTACTCACTTTTTCTTTTCCTTTTATCATATTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* * * * *
13124632 AAGAAAAGGGAGGAA-AGAAGAAAAAAAGTTTTAATGGGAGAAGAATTCAGTTTATCTTAGTGAG
66 AAGAAAAGAGA-GAAGAGAAGAAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG
* * * *
13124696 AGGAG-AAAATATATACAGGTTCATTTTGGCATTGAGTAAAGGCAAATTTCAATATATATAATTC
130 AGGAGTATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTC
* * * *
13124760 TAAGATGACGTC-AATATATA-A-ACATATATATA-AAAGTTTAACTAAAGGTTTGGCAGCAA
195 TAAGATGATGTCAAATATATATATATATATATATATAAAGTTTATCTAAAGGTTTGGCAACAA
* * *
13124819 CCTCATTACTCACTTTTCCTTTTCCTTTAATCTTCTTAACATAAACTAACCAGGAGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* *
13124884 AAGAAATGAGAGAAGAG-AGAATAATAAGTTTAAATGGGAGAAGAATTAAG--TATCTGAGTGAG
66 AAGAAAAGAGAGAAGAGAAGAA-AATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG
* * *
13124946 AGATGAGGATAATATATACAGGTTCAGTTTGACAGTGAGTAATGGCAAATGTC-A-ATATATAAT
130 AG--GAGTATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAAT
* *
13125009 GCTAAGATGATGTCAATATATATATATATATATCTCTTTATATAAAGTTT-TCTAAAGGTTTGGC
193 TCTAAGATGATGTCAA-ATATATATATATATA----TATATATAAAGTTTATCTAAAGGTTTGGC
13125073 AGA-AA
253 A-ACAA
*
13125078 -CTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAATTAACAAAGAGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
13125142 AAGAAAAGAGAGAAGAGAAG-AAATAAGTTTGAATGGGAGAAGAATTAAGTTTAT-TGAGTGAGA
66 AAGAAAAGAGAGAAGAGAAGAAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
* *
13125205 GG-GTATAATATATACAGGTTCATTTTGTCATTGAGTAATGGAAAATGTCAATATATATAATTCT
131 GGAGTATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCT
* *
13125269 AAGATGATGTCAAATATATATATATATATATATATAAAGGTTTATCTGAAGGTTTGACAACAA
196 AAGATGATGTCAAATATATATATATATATATATATAAA-GTTTATCTAAAGGTTTGGCAACAA
* * * *
13125332 CCGCATTACTCACTTTTCCTTTTCCTTTCATCATCTTTACATCAACTAACAACA-AGAAAAAGAT
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAA-AGAGAAAAAGAT
* * *
13125396 GAAGAAATGGGAGAAGAGAAG-AAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTGAGTGAG
65 GAAGAAAAGAGAGAAGAGAAGAAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG
* **
13125460 AGGA-TATAATATATAGAGGTTCATACTGACATT
130 AGGAGTATAATATATACAGGTTCATTTTGACATT
13125493 TAAAAGATCA
Statistics
Matches: 593, Mismatches: 54, Indels: 50
0.85 0.08 0.07
Matches are distributed among these distances:
250 13 0.02
251 28 0.05
252 106 0.18
253 51 0.09
254 16 0.03
255 154 0.26
256 54 0.09
257 51 0.09
258 87 0.15
259 26 0.04
260 7 0.01
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (257 bp):
CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
AAGAAAAGAGAGAAGAGAAGAAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
GGAGTATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATATAATTCT
AAGATGATGTCAAATATATATATATATATATATATAAAGTTTATCTAAAGGTTTGGCAACAA
Found at i:13131649 original size:244 final size:244
Alignment explanation
Indices: 13131133--13132172 Score: 1588
Period size: 244 Copynumber: 4.3 Consensus size: 244
13131123 AGAAAAAGAT
* * * * *
13131133 GAAATAAATTTGAATGGGAGAAGAATTAAGCTTATCTAAGTGAGAATAGAGAATATATACAGGTT
1 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGTT
* *
13131198 CATTTTGACATTGAGTAATGACAAATATAAATATATATATAATTCTAAGATGATGTCAA-A-ATA
66 CATTTTGACATTGAGTAATGGCAAATATAAATA-A-ATATAATGCTAAGATGATGTCAATATATA
13131261 TATAT-AA-GTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCA-GTTTTCCTTTTCCTTTAAT
129 TATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACG-TTTCCTTTTCCTTTAA-
* * *
13131323 TATCTTAACATAAAC-AAGCAAAGAGAAAAAGATGAAGAAATGATAGAAGAGAA
192 TATCTTAAAATAAACTAA-CAAAGCGAAAAAGATGAAGAAATGAGAGAAGAGAA
*
13131376 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTCAGTGAGAAGAGATAATATATACAGGTT
1 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGTT
13131441 CATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTAAGATGATGTCAATATATATA
66 CATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTAAGATGATGTCAATATATATA
* * *
13131506 TATAAAGGTTTATTTGAAGGTTTGGCGGCAACCTCATTACTCACGTTTCCTTTTCTTTTAATATC
131 TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACGTTTCCTTTTCCTTTAATATC
*
13131571 TTAAAATAAACTAACAAAGCGGAAAAGATGAAGAAATGAGAGAAGAGAA
196 TTAAAATAAACTAACAAAGCGAAAAAGATGAAGAAATGAGAGAAGAGAA
*
13131620 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTTTCTTAGTGAGAAGAGATAATATATACAGGTT
1 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGTT
* *
13131685 CATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATAATGTCAATATATATA
66 CATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTAAGATGATGTCAATATATATA
* * * *
13131750 TATAAAGGTTTATTTGAAGGTTTGGCGGCAACCTCATTACTCACTTTTCCTTTTCTTTTAATATC
131 TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACGTTTCCTTTTCCTTTAATATC
*
13131815 TTAAAATAAACTAACAAAGCGGAAAAGATGAAGAAATGAGAGAAGAGAA
196 TTAAAATAAACTAACAAAGCGAAAAAGATGAAGAAATGAGAGAAGAGAA
*
13131864 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTTTCTTAGTGAGAAGAGATAATATATACAGGTT
1 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGTT
* * *
13131929 CATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAAAAAATATA
66 CATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTAAGATGATGTCAATATATATA
** * * *
13131994 TATAAAGGTTTATCTGTTGGTTTGGTAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCAT
131 TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACGTTTCCTTTTCCTTTAAT-AT
* * ** *
13132059 CTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGACAA
195 CTTAAAATAAACTAACAAAGCGAAAAAGATGAAGAAATGAGAGAAGAGAA
* * * ** **
13132109 GAAATAAGCTTGAATGGGAGAAGAATTACGTTTATCTGAGTGAGTGGAGAGGATATATACAGGT
1 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGT
13132173 CAATTGTGAT
Statistics
Matches: 747, Mismatches: 43, Indels: 12
0.93 0.05 0.01
Matches are distributed among these distances:
241 22 0.03
242 2 0.00
243 100 0.13
244 469 0.63
245 153 0.20
246 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (244 bp):
GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGAGATAATATATACAGGTT
CATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTAAGATGATGTCAATATATATA
TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACGTTTCCTTTTCCTTTAATATC
TTAAAATAAACTAACAAAGCGAAAAAGATGAAGAAATGAGAGAAGAGAA
Found at i:13132048 original size:488 final size:484
Alignment explanation
Indices: 13130818--13132172 Score: 1761
Period size: 488 Copynumber: 2.8 Consensus size: 484
13130808 TTTGTAACAG
* * * * *
13130818 CCTCTTTACTCACTTTTTCTTTTCCTTTT-ATCATTTTAACATCAACTCACAAA-GATAAAGAGA
1 CCTCATTACTCACTTTTCCTTTT-CTTTTAAT-ATCTTAACATAAACTAACAAAGGA-AAA-AGA
* * * *
13130881 TGAAGAAATGAGAGAAAAGAAGTAATAAGTTTTAATGGGAGAAGAATTATGTTTATCTTAGTGAG
62 TGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAG
* * * * * * * * * *
13130946 ACGAGAGAATATTTACAGGTTCGTTTTGGCATTCACTAAAGGCAAATGTCAATATATATAAAT-C
127 AAGAGATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATAT-AATGC
* * * *
13131010 TTAGATGATATCAATCTGTATACATATATATAAAGGTTTAACTGAAGGTTTGGTAGCAACCTCAT
191 TAAGATGATGTCAA-----A-AAATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCAT
13131075 TACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACT----AAC------A--AAG--A-G
250 TACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAACGAAAAGATGAAGAAATG
* * * *
13131125 A-A-AA-AGATGAAATAAATTTGAATGGGAGAAGAATTAAGCTTATCTAAGTGAGAATAGAGAAT
315 AGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAAT
* *
13131187 ATATACAGGTTCATTTTGACATTGAGTAATGACAAATATAAATATATATATAATTCTAAGATGAT
380 ATATACAGGTTCATTTTGACATTGAGTAATGACAAATATAAATATATATATAATGCTAAGATAAT
13131252 GTCAAAATATATATAAGTTTATCTGAAGGTTTGGCAGCAA
445 GTCAAAATATATATAAGTTTATCTGAAGGTTTGGCAGCAA
* *
13131292 CCTCATTACTCAGTTTTCCTTTTCCTTTAATTATCTTAACATAAAC-AAGCAAAGAGAAAAAGAT
1 CCTCATTACTCACTTTTCCTTTTCTTTTAA-TATCTTAACATAAACTAA-CAAAG-GAAAAAGAT
* *
13131356 GAAGAAATGATAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTCAGTGAGA
63 GAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGA
*
13131421 AGAGATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATAAATATAATGCTA
128 AGAGATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTA
* * * ** *
13131486 AGATGATGTCAATATATATATATAAAGGTTTATTTGAAGGTTTGGCGGCAACCTCATTACTCACG
193 AGATGATGTCAAAAAATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTACTCACT
* *
13131551 TTTCCTTTTCTTTTAAT-ATCTTAAAATAAACTAACAAAGCGGAAAAGATGAAGAAATGAGAGAA
258 TTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAA-C-GAAAAGATGAAGAAATGAGAGAA
* * *
13131615 GAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTTTCTTAGTGAGAAGAGATAATATATAC
321 GAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATAC
*
13131680 AGGTTCATTTTGACATTGAGTAATGGCAAATAT-AA-ATATATATAATGCTAAGATAATGTCAAT
386 AGGTTCATTTTGACATTGAGTAATGACAAATATAAATATATATATAATGCTAAGATAATGTCAA-
* *
13131743 ATATATATATAAAGGTTTATTTGAAGGTTTGGCGGCAA
450 A-ATATATAT-AA-GTTTATCTGAAGGTTTGGCAGCAA
* *
13131781 CCTCATTACTCACTTTTCCTTTTCTTTTAATATCTTAAAATAAACTAACAAAGCGGAAAAGATGA
1 CCTCATTACTCACTTTTCCTTTTCTTTTAATATCTTAACATAAACTAACAAAG-GAAAAAGATGA
*
13131846 AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTTTCTTAGTGAGAAG
65 AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAG
13131911 AGATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAG
130 AGATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAG
**
13131976 ATGATGTCAAAAAATATATATAAAGGTTTATCTGTTGGTTTGGTAGCAACCTCATTACTCACTTT
195 ATGATGTCAAAAAATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTACTCACTTT
* * *
13132041 TCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAGA
260 TCCTTTTCCTTTAATCATCTTAACATAAACTAACAAA-CG-AAAAGATGAAGAAATGAGAGAAGA
* * * * ** *
13132106 CAAGAAATAAGCTTGAATGGGAGAAGAATTACGTTTATCTGAGTGAGTGGAGAGGATATATACAG
323 GAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAG
13132171 GT
388 GT
13132173 CAATTGTGAT
Statistics
Matches: 769, Mismatches: 79, Indels: 51
0.86 0.09 0.06
Matches are distributed among these distances:
467 14 0.02
468 62 0.08
471 2 0.00
472 1 0.00
473 8 0.01
474 160 0.21
475 4 0.01
476 2 0.00
479 1 0.00
481 3 0.00
483 1 0.00
484 2 0.00
485 26 0.03
486 5 0.01
487 97 0.13
488 228 0.30
489 153 0.20
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (484 bp):
CCTCATTACTCACTTTTCCTTTTCTTTTAATATCTTAACATAAACTAACAAAGGAAAAAGATGAA
GAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGAGAAGA
GATAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGA
TGATGTCAAAAAATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTACTCACTTTT
CCTTTTCCTTTAATCATCTTAACATAAACTAACAAACGAAAAGATGAAGAAATGAGAGAAGAGAA
GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTT
CATTTTGACATTGAGTAATGACAAATATAAATATATATATAATGCTAAGATAATGTCAAAATATA
TATAAGTTTATCTGAAGGTTTGGCAGCAA
Found at i:13132932 original size:41 final size:41
Alignment explanation
Indices: 13132875--13132970 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 41
13132865 GAATTTTATT
* *
13132875 TTAACAAGAATTCTAGTCACCTAATTCTAACAATCTCTACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
13132916 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
*
13132957 TTGACAAGAATTCT
1 TTAACAAGAATTCT
13132971 CTATGAACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.30
Consensus pattern (41 bp):
TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
Found at i:13132982 original size:17 final size:17
Alignment explanation
Indices: 13132960--13132998 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
13132950 CTCCACCTTG
* * *
13132960 ACAAGAATTCTCTATGA
1 ACAAGAACTCTCAACGA
13132977 ACAAGAACTCTCAACGA
1 ACAAGAACTCTCAACGA
13132994 ACAAG
1 ACAAG
13132999 TTCTCCACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.23, G:0.13, T:0.18
Consensus pattern (17 bp):
ACAAGAACTCTCAACGA
Done.