Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 62 of 144
Found at i:13137524 original size:228 final size:228
Alignment explanation
Indices: 13137122--13137593 Score: 637
Period size: 228 Copynumber: 2.1 Consensus size: 228
13137112 GTTCTAATGG
* * * * * *
13137122 GAGAAGAATGAAGTTTATCTGAGTGAGAGGAGAAAATCTATACAGGTTCGTTTTGGCATTGAGTA
1 GAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAAAATATATACAGGTTCGATTTGACATTGAGTA
* * * *
13137187 AAGGCAAATTTCAATATATATAATTCTAAGATGATGTCAATATATAAACATATAGATAAAGGTTT
66 AAGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATAAACATATAGACAAAGGTTT
* * * *
13137252 AACTGAAGGTTTGGTAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATA-A
131 AACTGAACGTTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCCTAACA-ACA
*
13137316 ACTAACTAACA-GAAAAAGATGAAGAAATGAGAGAA
195 ACTAA--AAAATGAAAAAGATGAAGAAATGAGAGAA
*
13137351 GAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTC-ATTTGACATTGAGTA
1 GAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAAAATATATACAGGTTCGATTTGACATTGAGTA
* ***
13137415 ATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATATGTATATATG-CAAAGGTT
66 AAGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATAAACATATA-GACAAAGGTT
* * * *
13137479 TATCTGAACGTTTGGCAACAACCTTATTACTCACTTTTTCTTTTCCTTTCATCATCCTAACAACA
130 TAACTGAACGTTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCCTAACAACA
*
13137544 ACTAAAAAATTAAAAAGATGAAGAAATGAGAGAA
195 ACTAAAAAATGAAAAAGATGAAGAAATGAGAGAA
* *
13137578 GACAAGAAATAAGTTT
1 GAGAAGAATTAAGTTT
13137594 GAATGGGAGA
Statistics
Matches: 213, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
226 3 0.01
227 38 0.18
228 127 0.60
229 45 0.21
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.31
Consensus pattern (228 bp):
GAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAAAATATATACAGGTTCGATTTGACATTGAGTA
AAGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATAAACATATAGACAAAGGTTT
AACTGAACGTTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCCTAACAACAA
CTAAAAAATGAAAAAGATGAAGAAATGAGAGAA
Found at i:13138044 original size:836 final size:838
Alignment explanation
Indices: 13136336--13138490 Score: 2824
Period size: 836 Copynumber: 2.5 Consensus size: 838
13136326 TAACAATCAG
*
13136336 TATATATAATTCTAAGATGATGTCAATATATAAACATATATATAAAGGTTTAACTAAAGGTTTGG
1 TATATATAATTCTAAGATGATGTCAATATATAAACATATATATAAAGGTTTAACTGAAGGTTTGG
* *
13136401 CAGTAACCTTATTACTCACTTTTCCTTTTCCTTTAATCAT-TTAGCATAAACTAACAAAGAGAAA
66 CAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAA
*
13136465 AAGATGAAGAAATGAGAGAAGTGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCGAAG
131 AAGAT---G--A--AGA-AA-TGAAG----AA---TGAA--GGAGAAGAATTAAGTTTATCTAAG
* * *
13136530 TGAGAAGAGAGAATATACACAGGTTCATTTTGACAGTGAGTAATGGCAAATATAATTATATATAA
178 TGAGAAGAGAGAATATATACAGGTTCA-TTTGACATTGAGTAATGGCAAATATAAATATATATAA
13136595 TGCTAAGATGATGTCAATATATATATATATATATATATAAGGTTTATCTGAAGATTTGGCAACAA
242 TGCTAAGATGATGTC---A-ATATATAT-TATATATA-AAGGTTTATCTGAAG-TTTGGCAACAA
* * * * *
13136660 TCTCATTACTTACTTTTCCTTTTCCTCTCATCATCTTAACATCAACTAACAAATTGAAAAAGATG
300 CCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACAACAACTAAAAAATT-AAAAAGATG
* * * *
13136725 AAGAAATGGGAAAAGAGAAGAAATAAGTTTGAATGGGAGAAGAAATAAGTTTATCTGAGTTAGAG
364 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
* * *
13136790 GAGAGGATATATATAGGTCAATTGTGATTCATTATCACCAAAAGATCTAGAAAACATGTTGAACC
429 GAGACGATACATACAGGTCAATTGTGATTCATTATCACCAAAAGA-CTAGAAAACATGTTGAACC
*
13136855 TAAAGACGCAGATTAGAAACATATAATTAAAATATATCTTTCTTATAAACATGAATTAAGAAACA
493 TAAAGACGCAGATTAGAAACATATAATTAAAATACATCTTTCTTATAAACATGAATTAAGAAACA
* * * * *
13136920 GGTTTGGATGATATTCCTCATAAATTTAAACCTATTTCTTGGTGGTAGGCTTGGCAATGGTGGAG
558 GATTTAGATGATATTCCTCATAAATTTAAACCAATTTCTTAGTGGTAGGCTTGGCAATGATGGAG
* *
13136985 ATTGGCTAATAGAGACAACTGATAGTTTTTTAGTAGCCTCTTTACTCACTTTTTCTTTTCGTTTC
623 ATTGGCTAATAGAGACAACTGATAGTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTC
* * *
13137050 ATCATATTAACATCAACTAACAAAAAAAAGAAGATAAAGAAATGGGAGAAAAGAAGAAATAAGTT
688 ACCATATTAACATCAACTAACAAAAAAAAGAAGATAAAGAAAAGGGAGAAAAGAAGAAAAAAGTT
* * * *
13137115 CTAATGGGAGAAGAATGAAGTTTATCTGAGTGAGAGGAGAAAATCTATACAGGTTCGTTTTGGCA
753 CTAACGGGAGAAGAATGAAGTTTATCTGAGTGAGAGAAGAAAATATATACAGGTTCATTTTGGCA
* *
13137180 TTGAGTAAAGGCAAATTTCAA
818 ATGAGTAAAGGCAAATGTCAA
*
13137201 TATATATAATTCTAAGATGATGTCAATATATAAACATATAGATAAAGGTTTAACTGAAGGTTTGG
1 TATATATAATTCTAAGATGATGTCAATATATAAACATATATATAAAGGTTTAACTGAAGGTTTGG
* * * *
13137266 TAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACTAACAGAAA
66 CAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAA
13137331 AAGATGAAGAAATG-AG-A-GAA-GAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATAT
131 AAGATGAAGAAATGAAGAATGAAGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATAT
13137392 ACAGGTTCATTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATA
196 ACAGGTTCATTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATA
* *
13137457 TATATGTATATATGCAAAGGTTTATCTGAACGTTTGGCAACAACCTTATTACTCACTTTTTCTTT
261 TATAT-TATATAT--AAAGGTTTATCTGAA-GTTTGGCAACAACCTCATTACTCACTTTTCCTTT
* *
13137522 TCCTTTCATCATCCTAACAACAACTAAAAAATTAAAAAGATGAAGAAATGAGAGAAGACAAGAAA
322 TCCTTTCATCATCTTAACAACAACTAAAAAATTAAAAAGATGAAGAAATGAGAGAAGAGAAGAAA
* *
13137587 TAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGACGATACATACATGTCAATT
387 TAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGACGATACATACAGGTCAATT
* * * *
13137652 GTGATTCGTTATCACCAAAAGA-T-GAAATCATGTTGAACCTAAAGACGTAGATTGGAAACATAT
452 GTGATTCATTATCACCAAAAGACTAGAAAACATGTTGAACCTAAAGACGCAGATTAGAAACATAT
* * ** * * *
13137715 AATTAAAATACGTCTTTGTTATAATTATGAATTAAGAAAGA-ATTATAGATGATATTCGC-CTTT
517 AATTAAAATACATCTTTCTTATAAACATGAATTAAGAAACAGATT-TAGATGATATTC-CTCATA
* * * * *
13137778 ACTTTAAACCAATTTTTTAGTGGTAGGCTTGGCAATGATGGAGATTGGGTAATGGAGACAACTTA
580 AATTTAAACCAATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTGGCTAATAGAGACAACTGA
13137843 -AGGTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCACCATATTAACATCAACTAAC
645 TA-GTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCACCATATTAACATCAACTAAC
* * * *
13137907 AAAAACAAA-AAGATGACGAAAAGGGAGAAAA-AAGAAAAAAGTTTTAACGGGAGAAGAATTAAG
709 AAAAA-AAAGAAGATAAAGAAAAGGGAGAAAAGAAGAAAAAAGTTCTAACGGGAGAAGAATGAAG
*
13137970 TTTATCTGAGTGAGAGAAGAAATATATATATACAGGTTTATTTTGGCAATGAGTAAAGGCAAATG
773 TTTATCTGAGTGAGAGAAG-AA-A-ATATATACAGGTTCATTTTGGCAATGAGTAAAGGCAAATG
13138035 TCAA
835 TCAA
13138039 TATATATAATTCTAAGATGATGTCAATATATAAACTTATATATATATATATAGGTTTAACTGAAG
1 TATATATAATTCTAAGATGATGTCAATATATAAAC----ATATATATA-A-AGGTTTAACTGAAG
* *
13138104 GTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATTATCGTAGCATAAACTAACAAA
60 GTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAA
13138169 GAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAAGAAGTTTGAATGGGAGAAGAATTAAGTTTA
125 GAGAAAAAGATGAAGAAAT------------G-AAGAA---TGAA--GGAGAAGAATTAAGTTTA
** * *
13138234 TCTAAGTGAGAAGTTAGAATATATACAAGTTTATTCTGACATTGAGTAATGGCAAATATAAATAT
172 TCTAAGTGAGAAGAGAGAATATATACAGGTTCATT-TGACATTGAGTAATGGCAAATATAAATAT
* *
13138299 ATATAATGCTAAGATGATG----TA-A-A-TATATATAAAGGTTTAACTGAAGGTTTGACAACAA
236 ATATAATGCTAAGATGATGTCAATATATATTATATATAAAGGTTTATCTGAA-GTTTGGCAACAA
*
13138357 CCTCATTACTCACTTTTCCTTTTCCTTT-AGTCATCTTAACATA-AACTAACAAAGA-GAAAAAG
300 CCTCATTACTCACTTTTCCTTTTCCTTTCA-TCATCTTAACA-ACAACTAA-AAA-ATTAAAAAG
* *
13138419 ATGAAGAAATGAGAGTAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGGGTGA
361 ATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGA
13138484 GAGGAGA
426 GAGGAGA
13138491 GAATATATGC
Statistics
Matches: 1155, Mismatches: 91, Indels: 95
0.86 0.07 0.07
Matches are distributed among these distances:
835 49 0.04
836 227 0.20
837 6 0.01
838 74 0.06
839 123 0.11
840 73 0.06
841 2 0.00
842 8 0.01
843 51 0.04
844 140 0.12
847 3 0.00
851 1 0.00
856 4 0.00
857 69 0.06
858 82 0.07
859 12 0.01
861 2 0.00
862 1 0.00
863 6 0.01
865 100 0.09
866 74 0.06
867 48 0.04
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (838 bp):
TATATATAATTCTAAGATGATGTCAATATATAAACATATATATAAAGGTTTAACTGAAGGTTTGG
CAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAA
AAGATGAAGAAATGAAGAATGAAGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATAT
ACAGGTTCATTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATA
TATATTATATATAAAGGTTTATCTGAAGTTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCT
TTCATCATCTTAACAACAACTAAAAAATTAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAG
TTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGACGATACATACAGGTCAATTGTGA
TTCATTATCACCAAAAGACTAGAAAACATGTTGAACCTAAAGACGCAGATTAGAAACATATAATT
AAAATACATCTTTCTTATAAACATGAATTAAGAAACAGATTTAGATGATATTCCTCATAAATTTA
AACCAATTTCTTAGTGGTAGGCTTGGCAATGATGGAGATTGGCTAATAGAGACAACTGATAGTTT
TTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCACCATATTAACATCAACTAACAAAAAAA
AGAAGATAAAGAAAAGGGAGAAAAGAAGAAAAAAGTTCTAACGGGAGAAGAATGAAGTTTATCTG
AGTGAGAGAAGAAAATATATACAGGTTCATTTTGGCAATGAGTAAAGGCAAATGTCAA
Found at i:13138360 original size:241 final size:244
Alignment explanation
Indices: 13137852--13138769 Score: 945
Period size: 241 Copynumber: 3.7 Consensus size: 244
13137842 AAGGTTTTTT
* * * * * * * * *
13137852 AGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCACCATATTAACATCAACTAACAAAAACAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* * * * * * * *
13137917 AGATGACGAAAAGGGAGAA-AAAAGAAAAAAGTTTTAACGGGAGAAGAATTAAGTTTATCTGAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
* * * * * * * * * *
13137981 GAGAGAAGAAATATATATATACAGGTTTATTTTGGCAATGAGTAAAGGCAAATGTCAATATATAT
131 --GAGAAGAGAGA-ATATATACAAGTTCATTCTGACATTGAGTAATGGCAAATATAAATATATAT
*
13138046 AATTCTAAGATGATGTCAATATATAAACTTATATATATATATATAGGTTTAACTGAAGGTTTGGC
193 AATGCTAAGATGATG------T-T--A--TATATATATATA-A-AGGTTTAACTGAAGGTTTGGC
* * *
13138111 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATTATCGTAGCATAAACTAACAAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
*
13138176 AGATGAAGAAATGAGAGAAGAGAAGAAAGAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
** *
13138241 GAGAAGTTAGAATATATACAAGTTTATTCTGACATTGAGTAATGGCAAATATAAATATATATAAT
131 GAGAAGAGAGAATATATACAAGTTCATTCTGACATTGAGTAATGGCAAATATAAATATATATAAT
*
13138306 GCTAAGATGATG-TA-A-ATATATATAAAGGTTTAACTGAAGGTTTGAC
196 GCTAAGATGATGTTATATATATATATAAAGGTTTAACTGAAGGTTTGGC
* *
13138352 AACAACCTCATTACTCACTTTTCCTTTTCCTTTAGTCATCTTAACATAAACTAACAAAGAGAAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* **
13138417 AGATGAAGAAATGAGAGTAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGGGT
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
* * * * * * *
13138482 GAGAGGAGAGAATATATGCATGTTCATTTTGACATTGAGTAGTGGCAAATGTCAATATATATAAT
131 GAGAAGAGAGAATATATACAAGTTCATTCTGACATTGAGTAATGGCAAATATAAATATATATAAT
** *
13138547 GCTAAGATGATGTTTACATATATATATATGTCTATTTATAAAGGTTTATTTAAAGGTTTGGC
196 GCTAAGATGATG------T-TATATATA----TA--TATAAAGGTTTAACTGAAGGTTTGGC
* * * *
13138609 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACTTCAGCTAACAAAGA-AAAA
1 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
* * * *
13138673 AGATGAAGAAATTAGAGAAGAGAAGAAATAAGTTTGATTGAGAGAAGAATTAAGTTTACCTAA--
66 AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
* * * *
13138736 GAG--GATAGAATATATAGAGGTTCATTCTCACATT
131 GAGAAGAGAGAATATATACAAGTTCATTCTGACATT
13138770 TAAAAGATCA
Statistics
Matches: 568, Mismatches: 74, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
241 208 0.37
242 1 0.00
243 9 0.02
244 1 0.00
247 1 0.00
249 3 0.01
250 1 0.00
251 3 0.01
252 25 0.04
254 3 0.01
255 2 0.00
256 60 0.11
257 134 0.24
258 8 0.01
259 69 0.12
260 40 0.07
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (244 bp):
AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAA
AGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGT
GAGAAGAGAGAATATATACAAGTTCATTCTGACATTGAGTAATGGCAAATATAAATATATATAAT
GCTAAGATGATGTTATATATATATATAAAGGTTTAACTGAAGGTTTGGC
Found at i:13138738 original size:22 final size:22
Alignment explanation
Indices: 13138690--13138738 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
13138680 GAAATTAGAG
*
13138690 AAGAGAAGAAATAAGTTTGATT
1 AAGAGAAGAAATAAGTTTGACT
* *
13138712 GAGAGAAGAATTAAGTTT-ACCT
1 AAGAGAAGAAATAAGTTTGA-CT
13138734 AAGAG
1 AAGAG
13138739 GATAGAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (22 bp):
AAGAGAAGAAATAAGTTTGACT
Found at i:13144367 original size:16 final size:17
Alignment explanation
Indices: 13144346--13144377 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
13144336 TGATGTCCTT
13144346 ATTTTTCT-TTTCTTTC
1 ATTTTTCTATTTCTTTC
13144362 ATTTTTCTATTTCTTT
1 ATTTTTCTATTTCTTT
13144378 TTTTCTGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTTTCTATTTCTTTC
Found at i:13150184 original size:17 final size:17
Alignment explanation
Indices: 13150154--13150188 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
13150144 ACTAACAAAG
13150154 TGAGAAAGATGAAGAAA
1 TGAGAAAGATGAAGAAA
13150171 TGAGAGAAGA-GAAGAAA
1 TGAGA-AAGATGAAGAAA
13150188 T
1 T
13150189 AAGTTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.31, T:0.11
Consensus pattern (17 bp):
TGAGAAAGATGAAGAAA
Found at i:13151785 original size:17 final size:18
Alignment explanation
Indices: 13151755--13151788 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13151745 ATTTGGGTAG
13151755 GAAATAATAAGAAGAAAA
1 GAAATAATAAGAAGAAAA
*
13151773 GAAA-AATATGAAGAAA
1 GAAATAATAAGAAGAAA
13151789 CAAAAGGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (18 bp):
GAAATAATAAGAAGAAAA
Found at i:13154848 original size:29 final size:30
Alignment explanation
Indices: 13154788--13154888 Score: 100
Period size: 29 Copynumber: 3.4 Consensus size: 30
13154778 CAAATGGTTT
* *
13154788 TAAAATTATAAAAATTATTTTTTAAAAATA
1 TAAAATTCTTAAAATTATTTTTTAAAAATA
* * * *
13154818 TAGAATTTTTTAAATTATTTTTT-TAAATA
1 TAAAATTCTTAAAATTATTTTTTAAAAATA
*
13154847 TAAAATTCTTAAAATTA-ATTTT-AAAATAA
1 TAAAATTCTTAAAATTATTTTTTAAAAAT-A
*
13154876 TAAAATTATTAAA
1 TAAAATTCTTAAA
13154889 TAATTTTAAT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
28 8 0.14
29 32 0.54
30 19 0.32
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (30 bp):
TAAAATTCTTAAAATTATTTTTTAAAAATA
Found at i:13155733 original size:20 final size:22
Alignment explanation
Indices: 13155695--13155739 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
13155685 TTATTTAAAT
13155695 TTTTATTATTTCAAGAAAATAA
1 TTTTATTATTTCAAGAAAATAA
*
13155717 TTTTA-TATTTTAA-AAAATAA
1 TTTTATTATTTCAAGAAAATAA
13155737 TTT
1 TTT
13155740 AAATAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.45
21 7 0.32
22 5 0.23
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTTATTATTTCAAGAAAATAA
Found at i:13155743 original size:29 final size:30
Alignment explanation
Indices: 13155711--13155779 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
13155701 TATTTCAAGA
13155711 AAATAATTTTATA-TTTTAAAAAATAATTT
1 AAATAATTTTATATTTTTAAAAAATAATTT
** *
13155740 AAATAA-AATATATTTTTCAAAAATAATTT
1 AAATAATTTTATATTTTTAAAAAATAATTT
*
13155769 TAATAATTTTA
1 AAATAATTTTA
13155780 AACACATTTG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
28 4 0.12
29 26 0.81
30 2 0.06
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
AAATAATTTTATATTTTTAAAAAATAATTT
Found at i:13155941 original size:22 final size:22
Alignment explanation
Indices: 13155916--13155960 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
13155906 AATGATCAAT
13155916 TTGACCAAAACAACAAAGATTA
1 TTGACCAAAACAACAAAGATTA
13155938 TTGACCAAAACAACAAAGATTA
1 TTGACCAAAACAACAAAGATTA
13155960 T
1 T
13155961 GTATGGAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.20
Consensus pattern (22 bp):
TTGACCAAAACAACAAAGATTA
Found at i:13169297 original size:43 final size:43
Alignment explanation
Indices: 13169178--13169286 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 43
13169168 GACATTGTGA
* * * ** * *
13169178 GGAACATTTTTTCATAATATTGAAAGTATAT-AACTGAATGAGT
1 GGAACATTGTTTCCTAAAATTGAAAGTACGTGATC-GAATGAAT
* **
13169221 GTAACATTGTTTCCTAACTTTGAAAGTACGTGATCGAATGAAT
1 GGAACATTGTTTCCTAAAATTGAAAGTACGTGATCGAATGAAT
13169264 GGAACATTGTTTCCTAAAATTGA
1 GGAACATTGTTTCCTAAAATTGA
13169287 TAATATGTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (43 bp):
GGAACATTGTTTCCTAAAATTGAAAGTACGTGATCGAATGAAT
Found at i:13172488 original size:18 final size:19
Alignment explanation
Indices: 13172465--13172510 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
13172455 AAATTAAATA
*
13172465 ATAAAT-AATATATAACATG
1 ATAAATAAATA-ATAACAAG
13172484 A-AAATAAATAATAACAAG
1 ATAAATAAATAATAACAAG
13172502 ATAAATAAA
1 ATAAATAAA
13172511 CAAAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (19 bp):
ATAAATAAATAATAACAAG
Found at i:13172560 original size:14 final size:12
Alignment explanation
Indices: 13172504--13172569 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
13172494 ATAACAAGAT
*
13172504 AAATAAACAAAA
1 AAATAAACAATA
13172516 AAATAAA-AATAA
1 AAATAAACAAT-A
***
13172528 AAATTAAATGCTA
1 AAA-TAAACAATA
13172541 AAATAAACAAATA
1 AAATAAAC-AATA
13172554 AATATAAACAATA
1 AA-ATAAACAATA
13172567 AAA
1 AAA
13172570 ATAATTGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
11 2 0.05
12 16 0.37
13 18 0.42
14 7 0.16
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (12 bp):
AAATAAACAATA
Found at i:13172589 original size:105 final size:100
Alignment explanation
Indices: 13172480--13172667 Score: 252
Period size: 100 Copynumber: 1.8 Consensus size: 100
13172470 TAATATATAA
* * *
13172480 CATGAAAATAAATAATAAC-AAGATAAATAAACAAAAAAATAAAAATAAAAATTAAATGCTAAAA
1 CATGAAAATAAATAACAACTAA-ATAAACAAAC-AAAAAAT--AAAT--AAATTAAATGCGAAAA
13172544 TAAACAAATAAATATAAACAATAAAAATAATTGAGATTAGG
60 TAAACAAATAAATATAAACAATAAAAATAATTGAGATTAGG
* *
13172585 CATGAAAATAAATGACAACTAAATAAACAAACAAAAAATCAATAAATTAAATGCGAAAATAAACA
1 CATGAAAATAAATAACAACTAAATAAACAAACAAAAAATAAATAAATTAAATGCGAAAATAAACA
* *
13172650 ACTAAATATAAATAATAA
66 AATAAATATAAACAATAA
13172668 TAAAAAAGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
100 37 0.49
102 3 0.04
104 7 0.09
105 26 0.35
106 2 0.03
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.20
Consensus pattern (100 bp):
CATGAAAATAAATAACAACTAAATAAACAAACAAAAAATAAATAAATTAAATGCGAAAATAAACA
AATAAATATAAACAATAAAAATAATTGAGATTAGG
Found at i:13173476 original size:45 final size:45
Alignment explanation
Indices: 13173363--13173848 Score: 471
Period size: 45 Copynumber: 10.7 Consensus size: 45
13173353 GGTGTTCCAA
* * *
13173363 CTTCAATCTGGCCC-CTGGATTTAGGGATAAAAGATTGGATTTGG-TG
1 CTTCAATCTGCCCCTCTAGA-TTAGGGGTAAAAGATTGGA--TGGTTG
* * *
13173409 ACTTCAATCTATCCCCT-TAGATTAGCGGTAAAAGATTGGATAGTTG
1 -CTTCAATCT-GCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* * * * *
13173455 TTTCAATTTTCCCCTCTAGATTAGGGGTAAAAGACTGGATGGTAG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* * * * * * * *
13173500 CTTCAATCT-ACCCTGTTTGTAATAAGGGTAAAAGACTAGATTGTTG
1 CTTCAATCTGCCCCT-CTAG-ATTAGGGGTAAAAGATTGGATGGTTG
* * *
13173546 CTTCAATCTGCCTCTCTAAATTAGGGGTAAAAGATTGGATGGTGG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* *
13173591 CTTCAATCTGCCCCTCAAGATTAGGGGTAAAAGATTGGATTGTTG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* * * *
13173636 CTTTAATCTGCCCCTCTAGATTAGGGGTAAAAGACTAGATGGTGG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
*
13173681 CTTCAATCTGCCCCTCTGGATTAGGGGTAAAAGATTGGATGGTTG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* * * * * *
13173726 CTTCAATCTACCCTTTTGGATTAGGGGTAAAAGATTAGATGGTGG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* * * * *
13173771 CTTCAATTTGTCTCTCTAGATTAGAGGTAAAAGACTGGATGG-TG
1 CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
* *
13173815 ACTTCAATCTTCCCCT-TTGTATTAGGGGTAAAAG
1 -CTTCAATCTGCCCCTCTAG-ATTAGGGGTAAAAG
13173849 GTTGAATGTG
Statistics
Matches: 359, Mismatches: 71, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
44 13 0.04
45 278 0.77
46 33 0.09
47 29 0.08
48 6 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCCCCTCTAGATTAGGGGTAAAAGATTGGATGGTTG
Found at i:13173962 original size:49 final size:49
Alignment explanation
Indices: 13173909--13174416 Score: 283
Period size: 49 Copynumber: 10.4 Consensus size: 49
13173899 ACCGTTACAA
* * * * *
13173909 CTTCAATCTTTCCCTCTTTGGTTTTAGGGTGTTAGGTCCGTCGTTGTGG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * * * *
13173958 CTTCAA-CTTATCTCTCTTCAATTTTAAGGTGTTAGGTCCTTCGTTGCGG
1 CTTCAATCTT-TCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * * * * *
13174007 CTTCAACCTATCTCTCTTTAGTTTTAAGGTGTAAGAT--TTGCTGTTACGG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCAT-C-GTTGCGG
* * * * * * * **
13174056 TTTCAATCTTCCCCTCTTT-GATTTTAAGGTGTAAGAT-TAGCCATTACTA
1 CTTCAATCTTTCCCTCTTTAG-TTTTAAGGTGTTAGATCCA-TCGTTGCGG
* * * * * * * * *
13174105 CTTTAATATTTCCTTCTTTAATTTTAGGGTATTAGATCCTTCATTGTGG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * * * * *
13174154 CTTCAATCTATCCCTCTTCAATTTTAAAGTGTTA-AGTCCGTCGTTGCAG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGA-TCCATCGTTGCGG
* * * * * * *
13174203 CTTCAACCTATCCATCTTTATTTTTAAGGTGTAAGATCCATCGTTGTGA
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * * * * * * *
13174252 CTTTAATCTTTCCCTCTTCT-GTTTTAGGGTGTTTGGTCTACCATTACGG
1 CTTCAATCTTTCCCTCTT-TAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * ** * * * *
13174301 CTTCAACCTATCTGTCTTCAGTTTTAAGGTGTAAGATCCACCATTGCGG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* * * *
13174350 CTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGGTCCACCGTTGCAG
1 CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
* *
13174399 CTTCAACCTATCCCTCTT
1 CTTCAATCTTTCCCTCTT
13174417 CAACTCTAGG
Statistics
Matches: 348, Mismatches: 98, Indels: 26
0.74 0.21 0.06
Matches are distributed among these distances:
47 2 0.01
48 6 0.02
49 335 0.96
50 5 0.01
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (49 bp):
CTTCAATCTTTCCCTCTTTAGTTTTAAGGTGTTAGATCCATCGTTGCGG
Found at i:13174024 original size:98 final size:98
Alignment explanation
Indices: 13173922--13174416 Score: 392
Period size: 98 Copynumber: 5.1 Consensus size: 98
13173912 CAATCTTTCC
* * * * * *
13173922 CTCTTTGGTTTTAGGGTGTTAGGTCCGTCGTTGTGGCTTCAA-CTTATCTCTCTTCAATTTTAAG
1 CTCTTTAGTTTTAAGGTGTAAGATCCATCGTTGTGGCTTCAATCTT-TCCCTCTTCAATTTTAAG
** *
13173986 GTGTTAGGTCCTTCGTTGCGGCTTCAACCTATCT
65 GTGTTAGGTCCGCCGTTGCAGCTTCAACCTATCT
* ** * * **
13174020 CTCTTTAGTTTTAAGGTGTAAGAT--TTGCTGTTACGGTTTCAATCTTCCCCTCTTTGATTTTAA
1 CTCTTTAGTTTTAAGGTGTAAGATCCAT-C-GTTGTGGCTTCAATCTTTCCCTCTTCAATTTTAA
* * ** * * * *
13174083 GGTGTAAGATTAGCCATTACTA-CTTTAA--TATTT
64 GGTGTTAGGTCCGCCGTTGC-AGCTTCAACCTATCT
* * * * * * *
13174116 CCTTCTTTAATTTTAGGGTATTAGATCCTTCATTGTGGCTTCAATCTATCCCTCTTCAATTTTAA
1 -C-TCTTTAGTTTTAAGGTGTAAGATCCATCGTTGTGGCTTCAATCTTTCCCTCTTCAATTTTAA
* * *
13174181 AGTGTTAAGTCCGTCGTTGCAGCTTCAACCTATC-
64 GGTGTTAGGTCCGCCGTTGCAGCTTCAACCTATCT
* * * ** *
13174215 CATCTTTATTTTTAAGGTGTAAGATCCATCGTTGTGACTTTAATCTTTCCCTCTTCTGTTTTAGG
1 C-TCTTTAGTTTTAAGGTGTAAGATCCATCGTTGTGGCTTCAATCTTTCCCTCTTCAATTTTAAG
* ** * * *
13174280 GTGTTTGGTCTACCATTACGGCTTCAACCTATCT
65 GTGTTAGGTCCGCCGTTGCAGCTTCAACCTATCT
* * * * * *
13174314 GTCTTCAGTTTTAAGGTGTAAGATCCACCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGG
1 CTCTTTAGTTTTAAGGTGTAAGATCCATCGTTGTGGCTTCAATCTTTCCCTCTTCAATTTTAAGG
* *
13174379 TGTTAGGTCCACCGTTGCAGCTTCAACCTATCC
66 TGTTAGGTCCGCCGTTGCAGCTTCAACCTATCT
13174412 CTCTT
1 CTCTT
13174417 CAACTCTAGG
Statistics
Matches: 300, Mismatches: 85, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
96 5 0.02
97 3 0.01
98 283 0.94
99 4 0.01
100 5 0.02
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (98 bp):
CTCTTTAGTTTTAAGGTGTAAGATCCATCGTTGTGGCTTCAATCTTTCCCTCTTCAATTTTAAGG
TGTTAGGTCCGCCGTTGCAGCTTCAACCTATCT
Found at i:13174269 original size:196 final size:193
Alignment explanation
Indices: 13173881--13174416 Score: 569
Period size: 196 Copynumber: 2.7 Consensus size: 193
13173871 TGTTCAATTT
* * * *
13173881 TTTTAGGGTGTAAGATTCACCGTTACAACTTCAATCTTTCCCTCTTTGGTTTTAGGGTGTTAGGT
1 TTTTAGGGTGTAAGATT-ACCATTACAACTTCAATCTTTCCTTCTTTAGTTTTAGGGTGTTAGAT
* * * * *
13173946 CCGTCGTTGTGGCTTCAA-CTTATCTCTCTTCAATTTTAAGGTGTTAGGTCCTTCGTTGCGGCTT
65 CCATCATTGTGGCTTCAATC-TATCCCTCTTCAATTTTAAGGTGTTAGGTCCATCGTTGCAGCTT
* *
13174010 CAACCTATCTCTCTTTAGTTTTAAGGTGTAAGATTTGCTGTTACGGTTTCAATCTTCCCCTCTT-
129 CAACCTATC-CTCTTTAGTTTTAAGGTGTAAGATTCGCTGTGAC-GTTTCAATCTTCCCCTCTTC
13174074 TG
192 TG
* * * * * *
13174076 ATTTTAAGGTGTAAGATTAGCCATTACTACTTTAATATTTCCTTCTTTAATTTTAGGGTATTAGA
1 -TTTTAGGGTGTAAGATTA-CCATTACAACTTCAATCTTTCCTTCTTTAGTTTTAGGGTGTTAGA
* * * *
13174141 TCCTTCATTGTGGCTTCAATCTATCCCTCTTCAATTTTAAAGTGTTAAGTCCGTCGTTGCAGCTT
64 TCCATCATTGTGGCTTCAATCTATCCCTCTTCAATTTTAAGGTGTTAGGTCCATCGTTGCAGCTT
* * *
13174206 CAACCTATCCATCTTTATTTTTAAGGTGTAAGATCCATCGTTGTGAC-TTT-AATCTTTCCCTCT
129 CAACCTATCC-TCTTTAGTTTTAAGGTGTAAGAT---TCGCTGTGACGTTTCAATCTTCCCCTCT
13174269 TCTG
190 TCTG
** * ** * * * * *
13174273 TTTTAGGGTGTTTGGTCTACCATTACGGCTTCAACCTAT-CTGTCTTCAGTTTTAAGGTGTAAGA
1 TTTTAGGGTGTAAGAT-TACCATTACAACTTCAATCTTTCCT-TCTTTAGTTTTAGGGTGTTAGA
* * * * *
13174337 TCCACCATTGCGGCTTCAATCTTTCCCTCTTCAGTTTTAAGGTGTTAGGTCCACCGTTGCAGCTT
64 TCCATCATTGTGGCTTCAATCTATCCCTCTTCAATTTTAAGGTGTTAGGTCCATCGTTGCAGCTT
13174402 CAACCTATCCCTCTT
129 CAACCTAT-CCTCTT
13174417 CAACTCTAGG
Statistics
Matches: 284, Mismatches: 46, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
195 4 0.01
196 263 0.93
197 10 0.04
199 7 0.02
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (193 bp):
TTTTAGGGTGTAAGATTACCATTACAACTTCAATCTTTCCTTCTTTAGTTTTAGGGTGTTAGATC
CATCATTGTGGCTTCAATCTATCCCTCTTCAATTTTAAGGTGTTAGGTCCATCGTTGCAGCTTCA
ACCTATCCTCTTTAGTTTTAAGGTGTAAGATTCGCTGTGACGTTTCAATCTTCCCCTCTTCTG
Found at i:13179594 original size:26 final size:26
Alignment explanation
Indices: 13179533--13179603 Score: 72
Period size: 26 Copynumber: 2.7 Consensus size: 26
13179523 AGCATACATA
*
13179533 AAATGAAAATAAAATGCAAAGCAACAT
1 AAAT-AAAATAAAATGCAAAGCAACAC
* * *
13179560 ATATAAAATAAAATGCAAAGGATCAC
1 AAATAAAATAAAATGCAAAGCAACAC
* *
13179586 AAATTAAATTAAAT-CAAA
1 AAATAAAATAAAATGCAAA
13179604 TTTTAAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 4 0.11
26 30 0.81
27 3 0.08
ACGTcount: A:0.62, C:0.10, G:0.08, T:0.20
Consensus pattern (26 bp):
AAATAAAATAAAATGCAAAGCAACAC
Found at i:13184770 original size:52 final size:52
Alignment explanation
Indices: 13184686--13184838 Score: 261
Period size: 52 Copynumber: 2.9 Consensus size: 52
13184676 ATGAAAAAGA
*
13184686 AGGTCCGATGACTATATGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
* * * *
13184738 AGGTCTGATGACTATGTGTCATCATGAATATATGAATCCTTTACTGATTATG
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
13184790 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATT
1 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATT
13184839 CGTGAGTATA
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 92 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (52 bp):
AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
Found at i:13184841 original size:27 final size:27
Alignment explanation
Indices: 13184811--13184865 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
13184801 CTATGTGTCA
13184811 TCGTGAGTATATGAATCCTTTACGGAT
1 TCGTGAGTATATGAATCCTTTACGGAT
13184838 TCGTGAGTATATGAATCCTTTACGGAT
1 TCGTGAGTATATGAATCCTTTACGGAT
13184865 T
1 T
13184866 ATGAGGTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (27 bp):
TCGTGAGTATATGAATCCTTTACGGAT
Found at i:13184897 original size:79 final size:79
Alignment explanation
Indices: 13184766--13184917 Score: 268
Period size: 79 Copynumber: 1.9 Consensus size: 79
13184756 TCATCATGAA
* *
13184766 TATATGAATCCTTTACTGATTATGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTT
1 TATATGAATCCTTTACGGATTATGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTA
13184831 TACGGATTCGTGAG
66 TACGGATTCGTGAG
* *
13184845 TATATGAATCCTTTACGGATTATGAGGTCTGTTGACTATGTGTCATCGTGAGTATATGAATCCTA
1 TATATGAATCCTTTACGGATTATGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTA
13184910 TACGGATT
66 TACGGATT
13184918 ATAAGGTCTA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 69 1.00
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.38
Consensus pattern (79 bp):
TATATGAATCCTTTACGGATTATGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTA
TACGGATTCGTGAG
Found at i:13184916 original size:52 final size:52
Alignment explanation
Indices: 13184838--13184957 Score: 186
Period size: 52 Copynumber: 2.3 Consensus size: 52
13184828 CTTTACGGAT
* * **
13184838 TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGTTGACTATGTGTCA
1 TCGTGAGTATATGAATCCTATACGGATTATAAGGTCTAATGACTATGTGTCA
* *
13184890 TCGTGAGTATATGAATCCTATACGGATTATAAGGTCTAATGGCTATGTGTTA
1 TCGTGAGTATATGAATCCTATACGGATTATAAGGTCTAATGACTATGTGTCA
13184942 TCGTGAGTATATGAAT
1 TCGTGAGTATATGAAT
13184958 GAAATGAAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.38
Consensus pattern (52 bp):
TCGTGAGTATATGAATCCTATACGGATTATAAGGTCTAATGACTATGTGTCA
Found at i:13184945 original size:131 final size:131
Alignment explanation
Indices: 13184707--13184957 Score: 412
Period size: 131 Copynumber: 1.9 Consensus size: 131
13184697 CTATATGTCA
13184707 TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGATGACTATGTGTCATCATGAATATATG
1 TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGATGACTATGTGTCATCATGAATATATG
* * * *
13184772 AATCCTTTACTGATTATGAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGA
66 AATCCTATACGGATTATAAGGTCCAATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGA
13184837 T
131 T
* * *
13184838 TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGTTGACTATGTGTCATCGTGAGTATATG
1 TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGATGACTATGTGTCATCATGAATATATG
* * *
13184903 AATCCTATACGGATTATAAGGTCTAATGGCTATGTGTTATCGTGAGTATATGAAT
66 AATCCTATACGGATTATAAGGTCCAATGACTATGTGTCATCGTGAGTATATGAAT
13184958 GAAATGAAAT
Statistics
Matches: 110, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
131 110 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (131 bp):
TCGTGAGTATATGAATCCTTTACGGATTATGAGGTCTGATGACTATGTGTCATCATGAATATATG
AATCCTATACGGATTATAAGGTCCAATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGA
T
Found at i:13189421 original size:22 final size:22
Alignment explanation
Indices: 13189381--13189423 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13189371 GACTAATTTG
** *
13189381 CAATTTAAACGGACTAGAATTA
1 CAATTTAAAAAGACAAGAATTA
13189403 CAATTTAAAAAGACAAGAATT
1 CAATTTAAAAAGACAAGAATT
13189424 TAAACCCCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.26
Consensus pattern (22 bp):
CAATTTAAAAAGACAAGAATTA
Found at i:13194022 original size:43 final size:43
Alignment explanation
Indices: 13193923--13194004 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
13193913 CAAATATTCG
* *
13193923 AAGTATGTAATCGAATGAGTGGAACATTGTTTCCTAATACTTA
1 AAGTATGTAATTGAATGAATGGAACATTGTTTCCTAATACTTA
* *
13193966 AAGTATGTGATTGAATGAATTGAACATTGTTTCCTAATA
1 AAGTATGTAATTGAATGAATGGAACATTGTTTCCTAATA
13194005 TTGATAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (43 bp):
AAGTATGTAATTGAATGAATGGAACATTGTTTCCTAATACTTA
Found at i:13199609 original size:98 final size:98
Alignment explanation
Indices: 13199427--13199620 Score: 248
Period size: 98 Copynumber: 2.0 Consensus size: 98
13199417 TTTTCCTCTC
* *
13199427 TTTTATTTCTTTAAGAATATATTAGACCTTCTGACACGAAAAGAATTGACAACCCAGACACTCCA
1 TTTTATTTATTTAAGAATATATTAGACCTTCTGACACGAAAAGAAATGACAACCCAGACACTCCA
*
13199492 TCTCGATTACTCAGCCCAACACACTCCTAATCA
66 TCTCGATTACGCAGCCCAACACACTCCTAATCA
* * ** * *
13199525 TTTTTTTTATTTAAGAATGTATTATCCCTTTTGACGC-AAAATGAAATGACAACCCA-AGCACTC
1 TTTTATTTATTTAAGAATATATTAGACCTTCTGACACGAAAA-GAAATGACAACCCAGA-CACTC
* * *
13199588 CATCTCGGTTACGCTGTCCAACACACTCCTAAT
64 CATCTCGATTACGCAGCCCAACACACTCCTAAT
13199621 TTATTATTCC
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
97 5 0.06
98 77 0.94
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.31
Consensus pattern (98 bp):
TTTTATTTATTTAAGAATATATTAGACCTTCTGACACGAAAAGAAATGACAACCCAGACACTCCA
TCTCGATTACGCAGCCCAACACACTCCTAATCA
Found at i:13204518 original size:9 final size:9
Alignment explanation
Indices: 13204504--13204566 Score: 56
Period size: 9 Copynumber: 6.7 Consensus size: 9
13204494 AGGGAATATC
13204504 TTCTTCTTT
1 TTCTTCTTT
13204513 TTCTTCTTT
1 TTCTTCTTT
*
13204522 CTCTTCTTTT
1 TTCTTC-TTT
*
13204532 TCCTCTTGTTT
1 T--TCTTCTTT
13204543 TTCTTCTTT
1 TTCTTCTTT
*
13204552 TT-TTCCTTC
1 TTCTT-CTTT
13204561 TTCTTC
1 TTCTTC
13204567 CTCTGCCTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
8 2 0.05
9 29 0.66
10 5 0.11
11 4 0.09
12 4 0.09
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (9 bp):
TTCTTCTTT
Found at i:13204519 original size:12 final size:12
Alignment explanation
Indices: 13204502--13204565 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
13204492 TTAGGGAATA
* *
13204502 TCTTCTTCTTTT
1 TCTTTTTCTTCT
13204514 TCTTCTTTC-TCT
1 TCTT-TTTCTTCT
*
13204526 TCTTTTTCCTCT
1 TCTTTTTCTTCT
*
13204538 TGTTTTTCTTCT
1 TCTTTTTCTTCT
13204550 T-TTTTTCCTTCT
1 TCTTTTT-CTTCT
13204562 TCTT
1 TCTT
13204566 CCTCTGCCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.20
12 30 0.68
13 5 0.11
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.72
Consensus pattern (12 bp):
TCTTTTTCTTCT
Found at i:13204528 original size:21 final size:20
Alignment explanation
Indices: 13204502--13204562 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
13204492 TTAGGGAATA
13204502 TCTTCTTCTTTTTCTTCTTTC
1 TCTTCTT-TTTTTCTTCTTTC
* * *
13204523 TCTTCTTTTTCCTCTTGTTTT
1 TCTTCTTTTT-TTCTTCTTTC
13204544 TCTTCTTTTTTTCCTTCTT
1 TCTTCTTTTTTT-CTTCTT
13204563 CTTCCTCTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 4 0.12
21 29 0.88
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (20 bp):
TCTTCTTTTTTTCTTCTTTC
Found at i:13213627 original size:15 final size:17
Alignment explanation
Indices: 13213607--13213638 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
13213597 TGAAAAGAAT
13213607 TAATCAA-AAGA-TTAG
1 TAATCAATAAGAGTTAG
13213622 TAATCAATAAGAGTTAG
1 TAATCAATAAGAGTTAG
13213639 AAAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.16, T:0.28
Consensus pattern (17 bp):
TAATCAATAAGAGTTAG
Found at i:13241631 original size:140 final size:140
Alignment explanation
Indices: 13241379--13241655 Score: 464
Period size: 140 Copynumber: 2.0 Consensus size: 140
13241369 AGCAACTGAC
* * * *
13241379 TGAAGAGGGCGCTGACATGTTAATGAGTGATTTATCCATTGATGGTGTCATCTGGATAGGTAACA
1 TGAAGAGGGCGCTGACATGTTAATGAGTGATTTATCCATTGATGGTGCCATCTAGACAGGCAACA
13241444 ACCCCAATAACTATACCATGCATCGTAAATTCCTCACCATGCAAAGCAAGGTCTGGTTCCACTTT
66 ACCCCAATAACTATACCATGCATCGTAAATTCCTCACCATGCAAAGCAAGGTCTGGTTCCACTTT
13241509 ATTAATTGAT
131 ATTAATTGAT
* * *
13241519 TGAAGAGGGTGCTGACATGTTAATGAGTGATTTATGCGTTGATGGTGCCATCTAGACAGGCAACA
1 TGAAGAGGGCGCTGACATGTTAATGAGTGATTTATCCATTGATGGTGCCATCTAGACAGGCAACA
** *
13241584 ACCCCAATAACTATACCATGCATCGTCGATTCCTCACCGTGCAAAGCAAGGTCTGGTTCCACTTT
66 ACCCCAATAACTATACCATGCATCGTAAATTCCTCACCATGCAAAGCAAGGTCTGGTTCCACTTT
13241649 ATTAATT
131 ATTAATT
13241656 ATCGATTATT
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (140 bp):
TGAAGAGGGCGCTGACATGTTAATGAGTGATTTATCCATTGATGGTGCCATCTAGACAGGCAACA
ACCCCAATAACTATACCATGCATCGTAAATTCCTCACCATGCAAAGCAAGGTCTGGTTCCACTTT
ATTAATTGAT
Found at i:13242516 original size:24 final size:23
Alignment explanation
Indices: 13242482--13242541 Score: 61
Period size: 25 Copynumber: 2.6 Consensus size: 23
13242472 TGTTGAGGAA
* *
13242482 GAGAAAA--AAGAAGAGAATAAG
1 GAGAAAAGGAAGAAGAAAAGAAG
13242503 GAGAAAAAGGAAGAAAGAAAAGAAG
1 GAG-AAAAGGAAG-AAGAAAAGAAG
*
13242528 GAGAGAAGGAAGAA
1 GAGAAAAGGAAGAA
13242542 ATTTTTGTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 3 0.09
22 4 0.12
23 2 0.06
24 11 0.34
25 12 0.38
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (23 bp):
GAGAAAAGGAAGAAGAAAAGAAG
Found at i:13242537 original size:33 final size:34
Alignment explanation
Indices: 13242477--13242542 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
13242467 ATGGGTGTTG
*
13242477 AGGAAGAGAAAAAAGAAGAGAATAAGG-AGAAAA
1 AGGAAGAGAAAAAAGAAGAGAAGAAGGAAGAAAA
13242510 AGGAAGA-AAGAAAAGAAG-GAGAGAAGGAAGAAA
1 AGGAAGAGAA-AAAAGAAGAGA-AGAAGGAAGAAA
13242543 TTTTTGTCGC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
32 4 0.14
33 20 0.69
34 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (34 bp):
AGGAAGAGAAAAAAGAAGAGAAGAAGGAAGAAAA
Found at i:13249511 original size:16 final size:16
Alignment explanation
Indices: 13249486--13249518 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13249476 ATGATGATGC
13249486 CTTTATTTTTCT-TTT
1 CTTTATTTTTCTATTT
13249501 CTTTCATTTTTCTATTT
1 CTTT-ATTTTTCTATTT
13249518 C
1 C
13249519 CTTTTACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (16 bp):
CTTTATTTTTCTATTT
Found at i:13254489 original size:17 final size:19
Alignment explanation
Indices: 13254452--13254490 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
13254442 CAAGATCTAA
13254452 AAAAGAGAAAAAGATGAAG
1 AAAAGAGAAAAAGATGAAG
*
13254471 AAAAGAG-AGAAGA-GAAG
1 AAAAGAGAAAAAGATGAAG
13254488 AAA
1 AAA
13254491 TAAGTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 5 0.26
19 7 0.37
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (19 bp):
AAAAGAGAAAAAGATGAAG
Found at i:13261251 original size:24 final size:23
Alignment explanation
Indices: 13261223--13261280 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 23
13261213 TAGACTAATA
*
13261223 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTCAAACAAAT-AAC
* * *
13261247 AGAGTTTAATTTAAACAAATAAT
1 AGAGTTTAACTCAAACAAATAAC
13261270 AGAGTTTAACT
1 AGAGTTTAACT
13261281 GAAAGATCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 12 0.41
24 17 0.59
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.29
Consensus pattern (23 bp):
AGAGTTTAACTCAAACAAATAAC
Found at i:13264339 original size:24 final size:24
Alignment explanation
Indices: 13264311--13264369 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
13264301 TAGACTAATA
* *
13264311 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTCAAAAAAATAAAC
* * *
13264335 AGAGTTTAATTTAAAAAAATAAAT
1 AGAGTTTAACTCAAAAAAATAAAC
13264359 AGAGTTTAACT
1 AGAGTTTAACT
13264370 GAAAGATTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTCAAAAAAATAAAC
Found at i:13265056 original size:17 final size:17
Alignment explanation
Indices: 13265034--13265072 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
13265024 TTTAAAAGAT
*
13265034 AAACACTACC-AAATAAA
1 AAACAC-ACCTAAAGAAA
13265051 AAACACACCTAAAGAAA
1 AAACACACCTAAAGAAA
13265068 AAACA
1 AAACA
13265073 ACAGAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 3 0.15
17 17 0.85
ACGTcount: A:0.67, C:0.23, G:0.03, T:0.08
Consensus pattern (17 bp):
AAACACACCTAAAGAAA
Found at i:13265371 original size:22 final size:22
Alignment explanation
Indices: 13265346--13265391 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
13265336 GATTATGTAA
*
13265346 TTATTTTTCT-TTTCTTTCAATT
1 TTATGTTTCTATTT-TTTCAATT
*
13265368 TTATGTTTCTATTTTTTCTATT
1 TTATGTTTCTATTTTTTCAATT
13265390 TT
1 TT
13265392 TTACACTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.13, C:0.11, G:0.02, T:0.74
Consensus pattern (22 bp):
TTATGTTTCTATTTTTTCAATT
Found at i:13268143 original size:51 final size:50
Alignment explanation
Indices: 13268065--13268248 Score: 226
Period size: 51 Copynumber: 3.6 Consensus size: 50
13268055 TAAACGAAAG
* *
13268065 GGTCCGATGGCTAAGTGTCATCATGAGTAAATGAATCCAGGATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCA-GATGGATTAAA
13268116 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCA-GATGGATTAAA
* * * * *
13268167 GGTCCGATGACTTAGTGTTATCGTGAGTATATGAATTCCTATATGGAATAAGA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCC-AGATGGATTAA-A
* *
13268220 GGTCTGATGATTATA-TGTCATCGTGAGTA
1 GGTCCGATGACTA-AGTGTCATCGTGAGTA
13268249 TGAAATGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
51 80 0.68
52 11 0.09
53 25 0.21
54 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (50 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCAGATGGATTAAA
Found at i:13269202 original size:15 final size:15
Alignment explanation
Indices: 13269182--13269211 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
13269172 GTTAACAAAG
*
13269182 ATTAACTATTTTGAT
1 ATTAACTATTATGAT
13269197 ATTAACTATTATGAT
1 ATTAACTATTATGAT
13269212 CTCTTAAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.50
Consensus pattern (15 bp):
ATTAACTATTATGAT
Found at i:13275299 original size:51 final size:50
Alignment explanation
Indices: 13275221--13275404 Score: 217
Period size: 51 Copynumber: 3.6 Consensus size: 50
13275211 TAAACGAAAG
13275221 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCAGGATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCA-GATGGATTAAA
* *
13275272 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGATCGATTAAA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCA-GATGGATTAAA
* * * * * * *
13275323 GGTCCAATGACTCAGTGTTATCGTGAGCATATGAATTCCTATATGGAATAAGA
1 GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCC-AGATGGATTAA-A
*
13275376 GTTCCGATGACTATA-TGTCATCGTGAGTA
1 GGTCCGATGACTA-AGTGTCATCGTGAGTA
13275405 TGAAATGAAA
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
51 77 0.69
52 10 0.09
53 24 0.21
54 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
GGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCAGATGGATTAAA
Found at i:13280268 original size:23 final size:23
Alignment explanation
Indices: 13280242--13280287 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
13280232 CCGACTAGAC
13280242 CTTCTACAAGCTATTGACTGGAT
1 CTTCTACAAGCTATTGACTGGAT
* *
13280265 CTTCTAGAAGCTGTTGACTGGAT
1 CTTCTACAAGCTATTGACTGGAT
13280288 GCCACGTCAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (23 bp):
CTTCTACAAGCTATTGACTGGAT
Found at i:13281044 original size:11 final size:10
Alignment explanation
Indices: 13281019--13281056 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
13281009 TAAGCAACCA
13281019 TTTTTTTCT-
1 TTTTTTTCTC
*
13281028 TCTTTTTCTCC
1 TTTTTTTCT-C
13281039 TTTTTTTCTC
1 TTTTTTTCTC
13281049 TTTTTTTC
1 TTTTTTTC
13281057 CTATTCAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.32
10 9 0.36
11 8 0.32
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTTCTC
Found at i:13281044 original size:19 final size:19
Alignment explanation
Indices: 13281019--13281058 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
13281009 TAAGCAACCA
13281019 TTTTTTTCTTCTTTTTCTCC
1 TTTTTTTC-TCTTTTTCTCC
*
13281039 TTTTTTTCTCTTTTTTTCC
1 TTTTTTTCTCTTTTTCTCC
13281058 T
1 T
13281059 ATTCAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTTCTCTTTTTCTCC
Found at i:13281148 original size:11 final size:11
Alignment explanation
Indices: 13281128--13281157 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13281118 TTTCTACTGC
*
13281128 TCTTTTTTTCT
1 TCTTTATTTCT
13281139 TCTTTATTTCT
1 TCTTTATTTCT
13281150 TCTTTATT
1 TCTTTATT
13281158 CGAACTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (11 bp):
TCTTTATTTCT
Found at i:13289540 original size:17 final size:17
Alignment explanation
Indices: 13289518--13289551 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
13289508 CTAAGAATTT
13289518 AAAGAAAATAAATTTAA
1 AAAGAAAATAAATTTAA
* *
13289535 AAAGAAACTCAATTTAA
1 AAAGAAAATAAATTTAA
13289552 GTATCAACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
AAAGAAAATAAATTTAA
Found at i:13292378 original size:5 final size:6
Alignment explanation
Indices: 13292363--13292387 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13292353 AACAAAGGGA
13292363 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
13292388 GGTAATAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:13305432 original size:21 final size:21
Alignment explanation
Indices: 13305407--13305446 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
13305397 ATGTAATTAT
13305407 TTTTCT-TTTCTTTTCTTTCAA
1 TTTTCTATTTCTTTT-TTTCAA
13305428 TTTTCTATTTCTTTTTTTC
1 TTTTCTATTTCTTTTTTTC
13305447 TTTCTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTTCTATTTCTTTTTTTCAA
Found at i:13305450 original size:12 final size:13
Alignment explanation
Indices: 13305417--13305458 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
13305407 TTTTCTTTTC
*
13305417 TTTTCTTTCAATT
1 TTTTCTTTCTATT
* *
13305430 TTCTATTTCT-TT
1 TTTTCTTTCTATT
13305442 TTTTCTTTCTATT
1 TTTTCTTTCTATT
13305455 TTTT
1 TTTT
13305459 ACACTTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTCTTTCTATT
Found at i:13307520 original size:18 final size:18
Alignment explanation
Indices: 13307484--13307522 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
13307474 GTTATTTGTT
*
13307484 TTTAAATTTATTATTAAA
1 TTTAAATTTATTATAAAA
13307502 TTTAAATTATATT-TAAAA
1 TTTAAATT-TATTATAAAA
13307520 TTT
1 TTT
13307523 TTATATACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAAATTTATTATAAAA
Found at i:13309148 original size:27 final size:27
Alignment explanation
Indices: 13309117--13309170 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
13309107 ATTACGAAAA
13309117 TAGGAAAATTTATTCAATTTCTTTTTT
1 TAGGAAAATTTATTCAATTTCTTTTTT
13309144 TAGGAAAATTTATTCAATTTCTTTTTT
1 TAGGAAAATTTATTCAATTTCTTTTTT
13309171 CTAATCCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (27 bp):
TAGGAAAATTTATTCAATTTCTTTTTT
Found at i:13315077 original size:251 final size:251
Alignment explanation
Indices: 13314723--13315380 Score: 883
Period size: 251 Copynumber: 2.6 Consensus size: 251
13314713 AATAGGCTTT
* ** * *
13314723 TTACTCACTTTTTCTTTTCCTTTCATCAGATTAATATCAACTAACAAAGAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAAAAAAAGATGAAGAA
* * *
13314788 ATGGGAGAAAAGAAGAAATAAGTTTTAATGGAAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
66 ATGAGAGAAAAGAAGAAATAAGATTGAATGGAAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
* *
13314853 AATATATATAGGTTCATTTTGGCATTGAGTAAAGGCAAATGTCAATATATATAATT-CAAAGATG
131 AATATATAAAGGTTCATTTTGACATTGAGTAAAGGCAAATGTCAATATATA-AATTGCAAAGATG
13314917 ATGTCAATAAATATACATATATATAAAGGTTTAACTGAAGGTTTGGAAGCAACCTAA
195 ATGTCAATAAATATACATATATATAAAGGTTTAACTGAAGGTTTGGAAGCAACCTAA
* * ** *
13314974 TTACTCACTTTTCCTTTTCCTTTAATCATCTTTACAGAAACTAAGAAAGAAAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAAAAAAAGATGAAGAA
* * * *
13315039 ATGAGAGAAAAGAAGCAATAAGATTGAATGGGAGAAGAACTAAGTTTATCTGAGAGAGAGGAGAG
66 ATGAGAGAAAAGAAGAAATAAGATTGAATGGAAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
* *
13315104 AATATATAAAGGTTCATTTTGACATTGAGTAATGGCAAATGTCAATATATAAATTGCTAAGATGA
131 AATATATAAAGGTTCATTTTGACATTGAGTAAAGGCAAATGTCAATATATAAATTGCAAAGATGA
* * * ** * *
13315169 TGTCAATATATATATATATATATGAAGGTTTATTTGAAGGTTTGGCAGCAACCTCA
196 TGTCAATAAATATACATATATATAAAGGTTTAACTGAAGGTTTGGAAGCAACCTAA
* * * *
13315225 TTACTCACTTTTCCTTTTCTTTTCATCGTCTTAACATCAACTAACAAAGACAAAAAGATAAAGAA
1 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAAAAAAAGATGAAGAA
* * * ** *
13315290 ATGATAGAAGAGAAGAGAAGAA-ATTGAATGGTCGAAGAATTAAGTTTA-CTTAAGTGAGAGGAT
66 ATGAGAGAAAAGAAGA-AATAAGATTGAATGGAAGAAGAATTAAGTTTATC-TGAGTGAGAGGA-
* **
13315353 GA-AATATATAGAGGTTCATACTGACATT
128 GAGAATATATAAAGGTTCATTTTGACATT
13315381 TAAAAGATCA
Statistics
Matches: 354, Mismatches: 49, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
250 5 0.01
251 343 0.97
252 6 0.02
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.30
Consensus pattern (251 bp):
TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAAAAAAAGATGAAGAA
ATGAGAGAAAAGAAGAAATAAGATTGAATGGAAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
AATATATAAAGGTTCATTTTGACATTGAGTAAAGGCAAATGTCAATATATAAATTGCAAAGATGA
TGTCAATAAATATACATATATATAAAGGTTTAACTGAAGGTTTGGAAGCAACCTAA
Found at i:13316699 original size:27 final size:28
Alignment explanation
Indices: 13316669--13316722 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
13316659 ATCTGGGTAG
13316669 GAAGAAGAATAAGA-AGAAAA-GAAAAAT
1 GAAG-AGAATAAGAGAGAAAACGAAAAAT
* *
13316696 GAAGAGAATTAGAGGGAAAACGAAAAA
1 GAAGAGAATAAGAGAGAAAACGAAAAA
13316723 AAATAAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 8 0.35
27 9 0.39
28 6 0.26
ACGTcount: A:0.65, C:0.02, G:0.26, T:0.07
Consensus pattern (28 bp):
GAAGAGAATAAGAGAGAAAACGAAAAAT
Found at i:13320705 original size:21 final size:22
Alignment explanation
Indices: 13320662--13320710 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
13320652 TAATAAATCA
* *
13320662 TAAACAGAAACAAATCTGTTTTT
1 TAAA-AGAAACAAATATGCTTTT
13320685 TAAAAGAAA-AAATATGCTTTT
1 TAAAAGAAACAAATATGCTTTT
*
13320706 AAAAA
1 TAAAA
13320711 TTAACCGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 14 0.61
22 5 0.22
23 4 0.17
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.31
Consensus pattern (22 bp):
TAAAAGAAACAAATATGCTTTT
Found at i:13320705 original size:22 final size:23
Alignment explanation
Indices: 13320662--13320705 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
13320652 TAATAAATCA
*
13320662 TAAACAGAAACAAATCTGTTTTT
1 TAAACAGAAACAAATATGTTTTT
*
13320685 TAAA-AGAAA-AAATATGCTTTT
1 TAAACAGAAACAAATATGTTTTT
13320706 AAAAATTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 10 0.53
22 5 0.26
23 4 0.21
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (23 bp):
TAAACAGAAACAAATATGTTTTT
Found at i:13323685 original size:22 final size:22
Alignment explanation
Indices: 13323650--13323711 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
13323640 AAAAAATAAA
*
13323650 GTGAATAGTGAGATTCTCTAAC
1 GTGAACAGTGAGATTCTCTAAC
* * * *
13323672 GTGAACAGTAAGATTATTTGAC
1 GTGAACAGTGAGATTCTCTAAC
13323694 GTGAACAGTGAGATTCTC
1 GTGAACAGTGAGATTCTC
13323712 AAGCAATATT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (22 bp):
GTGAACAGTGAGATTCTCTAAC
Found at i:13323785 original size:91 final size:91
Alignment explanation
Indices: 13323625--13323802 Score: 259
Period size: 91 Copynumber: 2.0 Consensus size: 91
13323615 ATGAACAGGA
* * * *
13323625 AATATTCTCTGCAAGAAAAAATAAAGTGAATAGTGAGATTCTCTAACGTGAACAGTAAGATTATT
1 AATATTCTCTGCAAGAAAAAACAAAATGAATAGTGAGATTCTCTAACGCGAACAGTAAGATTATC
13323690 TGACGTGAACAGTGAGATTCTCAAGC
66 TGACGTGAACAGTGAGATTCTCAAGC
* * * * *
13323716 AATATTCTCTGCAAGAAGAAAACAAAATGAATAGTGAGATTCTCTGATGCG-AGAGTGAGATTCT
1 AATATTCTCTGCAAGAA-AAAACAAAATGAATAGTGAGATTCTCTAACGCGAACAGTAAGATTAT
13323780 CTGACGTGAACAGTGAGATTCTC
65 CTGACGTGAACAGTGAGATTCTC
13323803 TTATAATTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 49 0.64
92 28 0.36
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (91 bp):
AATATTCTCTGCAAGAAAAAACAAAATGAATAGTGAGATTCTCTAACGCGAACAGTAAGATTATC
TGACGTGAACAGTGAGATTCTCAAGC
Found at i:13323797 original size:22 final size:22
Alignment explanation
Indices: 13323743--13323803 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
13323733 GAAAACAAAA
* *
13323743 TGAATAGTGAGATTCTCTGATG
1 TGAACAGTGAGATTCTCTGACG
* *
13323765 CG-AGAGTGAGATTCTCTGACG
1 TGAACAGTGAGATTCTCTGACG
13323786 TGAACAGTGAGATTCTCT
1 TGAACAGTGAGATTCTCT
13323804 TATAATTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (22 bp):
TGAACAGTGAGATTCTCTGACG
Found at i:13323834 original size:18 final size:18
Alignment explanation
Indices: 13323811--13323846 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13323801 TCTTATAATT
13323811 TTAAATTTTAATCAGAGA
1 TTAAATTTTAATCAGAGA
13323829 TTAAATTTTAATCAGAGA
1 TTAAATTTTAATCAGAGA
13323847 ATATATTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (18 bp):
TTAAATTTTAATCAGAGA
Found at i:13324066 original size:14 final size:14
Alignment explanation
Indices: 13324019--13324066 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
13324009 TTCTACTTTC
13324019 AAATTTAAGTTTTA
1 AAATTTAAGTTTTA
* *
13324033 AAATTCAAATTTTA
1 AAATTTAAGTTTTA
*
13324047 AAATTTAAGTTTTC
1 AAATTTAAGTTTTA
13324061 AAATTT
1 AAATTT
13324067 TAATTACATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (14 bp):
AAATTTAAGTTTTA
Found at i:13324081 original size:22 final size:22
Alignment explanation
Indices: 13324056--13324099 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13324046 AAAATTTAAG
*
13324056 TTTTCAAATTTTAATTACATTA
1 TTTTCAAATTTGAATTACATTA
13324078 TTTTCAAATTTGAATTACATTA
1 TTTTCAAATTTGAATTACATTA
13324100 CAACTTTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.52
Consensus pattern (22 bp):
TTTTCAAATTTGAATTACATTA
Found at i:13324682 original size:251 final size:235
Alignment explanation
Indices: 13324240--13324859 Score: 711
Period size: 235 Copynumber: 2.6 Consensus size: 235
13324230 AGTAGCCAAT
* * * *
13324240 TTACTCACTTTTTCC-TTTCCTTTCATCATATTAACATCAACTAACAAAGAGAAAAAGTTGAAG-
1 TTACTCAC-TTTTCCTTTTCCTTTCATCATCTTAACATAAACTAAAAAAGAGAAAAAGATGAAGA
* * * * *
13324303 -A--AGA-AA-AGAAGAAATAAGTTTCAATGGGAAAAGAATTACGTTTATTTGAGCGAGAGGAGA
65 AATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGA
* * * * * *
13324363 AAATATATACGGGTTCATTTTGGCATCTAGTAAAGGCAAATGTCAATATATATAATTCTAAGATG
130 GAATATATACAGGTTCATTTTGACATCTAGTAAAGGCAAATATAAATATATATAATGCTAAGATG
*
13324428 ATGTCAATATATATACATATGTATAAAGGTTTAACTGAACGTTTGGCAGCAACCTCA
195 ATGT---TA-ATAT--ATA--TAT--A----T-A-TGAACGTTTAGCAGCAACCTCA
*
13324485 TTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAAAAAAGAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAAAAAAGAGAAAAAGATGAAGAA
* *
13324550 ATGAGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAG
66 ATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
* * *
13324615 AATTTATACAGGTTCATTTTGACAT-TGAGTAATGGTAAATATAAATATATATAATGCTAAGATG
131 AATATATACAGGTTCATTTTGACATCT-AGTAAAGGCAAATATAAATATATATAATGCTAAGATG
* *
13324679 ATGTTAATATATATATATATGAAGGTTTAGCAGTAACCTCA
195 ATGTTAATATATATATATATGAACGTTTAGCAGCAACCTCA
**
13324720 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAACAAATTA-AAAAAGATGAAGA
1 TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAA-AAAAGAGAAAAAGATGAAGA
* * * *
13324784 AATGATAGAAG-GTAAGAAATACGTTTGAATGGGAGAAGAATTAAGTTTATCTAAATGAGAGGAG
65 AATGAGAGAAGAG-AAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAG
*
13324848 AGGATATATACA
129 AGAATATATACA
13324860 AGTAAATTGT
Statistics
Matches: 330, Mismatches: 35, Indels: 30
0.84 0.09 0.08
Matches are distributed among these distances:
234 1 0.00
235 141 0.43
236 5 0.02
237 1 0.00
241 1 0.00
243 3 0.01
244 6 0.02
245 54 0.16
247 5 0.02
248 2 0.01
249 3 0.01
250 3 0.01
251 105 0.32
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (235 bp):
TTACTCACTTTTCCTTTTCCTTTCATCATCTTAACATAAACTAAAAAAGAGAAAAAGATGAAGAA
ATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGAGAG
AATATATACAGGTTCATTTTGACATCTAGTAAAGGCAAATATAAATATATATAATGCTAAGATGA
TGTTAATATATATATATATGAACGTTTAGCAGCAACCTCA
Found at i:13325662 original size:24 final size:24
Alignment explanation
Indices: 13325634--13325689 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
13325624 TAGACTAATA
*
13325634 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTCAAACAAATAAAC
* * *
13325658 AGAGTTTAATTGAAACAATTAAAC
1 AGAGTTTAACTCAAACAAATAAAC
*
13325682 AAAGTTTA
1 AGAGTTTA
13325690 GTTGAAAGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.27
Consensus pattern (24 bp):
AGAGTTTAACTCAAACAAATAAAC
Found at i:13325694 original size:24 final size:24
Alignment explanation
Indices: 13325646--13325696 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
13325636 AGTTTGACTC
*
13325646 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAAAGTTTAATTG
* *
13325670 AAACAATTAAACAAAGTTTAGTTG
1 AAACAAATAAACAAAGTTTAATTG
13325694 AAA
1 AAA
13325697 GATTATTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.55, C:0.08, G:0.12, T:0.25
Consensus pattern (24 bp):
AAACAAATAAACAAAGTTTAATTG
Found at i:13327545 original size:13 final size:13
Alignment explanation
Indices: 13327527--13327555 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
13327517 TTTATAGGTA
13327527 TATCTAATGGGTG
1 TATCTAATGGGTG
13327540 TATCTAATGGGTG
1 TATCTAATGGGTG
13327553 TAT
1 TAT
13327556 TTCTAAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.07, G:0.28, T:0.41
Consensus pattern (13 bp):
TATCTAATGGGTG
Found at i:13327560 original size:15 final size:14
Alignment explanation
Indices: 13327524--13327561 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 14
13327514 CTATTTATAG
13327524 GTATATCTAATGGGT
1 GTAT-TCTAATGGGT
13327539 GTA-TCTAATGGGT
1 GTATTCTAATGGGT
13327552 GTATTTCTAA
1 GTA-TTCTAA
13327562 GATTGTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 13 0.62
15 8 0.38
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (14 bp):
GTATTCTAATGGGT
Found at i:13333316 original size:610 final size:609
Alignment explanation
Indices: 13327954--13343938 Score: 14150
Period size: 610 Copynumber: 26.0 Consensus size: 609
13327944 CCAAAAGAAT
* * *
13327954 AAATCATGTTGAACCTAAAGACACTGATTAGAAACATATAATTAACAT-TCGCCTTTGTTATAAA
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCT-GTCTTTGTTATAAA
* * * *
13328018 CATAAATTAAGAAAGAATTTTGGATGATATTTGTCACAAATTTAAACCTATTTCTTGGTGGTAGG
64 CATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGG
* * *
13328083 ATTGGCAATGATGGACATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTCACTCAC
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* * * *
13328148 ATTTTATTTTCCTTACATCAAAATAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
* * *
13328213 AAAGAATAAATAAGTTTTAATGTGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * * * ** *
13328278 CAGGTTCATTTTGACATTCAATAATCGCAAATATAAAAATATATAACACTATGATG-CGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * *
13328342 TATATGTATATATAAATAAAGGTTTATCTGAAGATTTGGCAACAACCTCATTAATCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
*
13328407 TTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAG
454 TTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAG
13328472 AAATAAGTTTGAATG-AGAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATATACAGGTC
519 AAATAAGTTTGAATGCA-AAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTC
* *
13328536 AATTGTCATTCGTTATCACCAAAAGGTG
582 AATTGTGATTCGTTATCACCAAAAAGTG
* * * **
13328564 AAATCATTTTGAACCTAATGACGTTGATTAAAAACATATAATTAAAATCCATCTTTGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * *
13328629 ATAAATTAAGAAAGAAATTTGGATGATATTCGTCATAAATTTAAACATATATCTTGGTGGTAGGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * *
13328694 TTGGCAATGATGGAGATTGGGTAATGGAGACAATTGTAGGTTTTTTAGCAACCTCTTTACTCACC
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
13328759 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAAGAAATGGGAGA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATG-AAGAAATGGGAGA
* * * * *
13328824 CAAGAAAAAAAAAGTTTTAATAGGAGAAGAATAAAGTTTATCTAAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * * *
13328889 CTGGTTCATTTTGACATTCAGTAATGGCATATATAAATATATATAATCCTATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* *
13328954 TATATGTATATATAAATAAAGGTTTACCTAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* * *
13329019 TTTCCTTTCATCATCTTAACATTAACTAAAAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAG
454 TTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAG
** * * **
13329084 AAATAAGTTTGAATGGGAAAAGAATTAAGTTTATCTGAGTCGGAGGAGAGGATAAATACAAATCA
519 AAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCA
* *
13329149 ATTGTGATTTGTTATCATC-AAAAGATG
583 ATTGTGATTCGTTATCACCAAAAAG-TG
* **
13329176 AAATCATGTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATTTGTCTTACTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * * * *
13329241 ATAAACTAAGAAAGAATTTT-GAATGATATTCGTGAAAAATTTAAACCTATTTCTTGGTGATAGG
65 ATAAATTAAGAAAGAATTTTAG-ATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGG
* * * * *
13329305 CTTAGCAATGATGAATATTGGGCAATGGAGACAACTGAAGGTTTTTTAGTAGCCTCTTTACTCAC
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* *
13329370 TTTTTCTTTTCCTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGATGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13329435 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTCAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * *
13329500 CAAGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * *
13329565 AATATGTATATATAAATAAAGGTTTATGTAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* *
13329630 TTTCCTTTCATCATCTTAACATCGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACATC-AACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* * * * *
13329694 GAAATAAGTTAGAATGGAAAGAGAATTAAGTTTATCTTAGT-GG-GCAGA-G-------AGG---
518 GAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCA
* *
13329746 A---T-A-T--ATAT-ACC-AAAAGATT
583 ATTGTGATTCGTTATCACCAAAAAG-TG
* * * * *
13329765 AAATCAGGTTGAACCTAAAGACGCTTATTAGAAACGTATAATTAAAATCCGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* *
13329830 ATAAATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCA-ATTTCTTA-GTGGTAG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAA-CATATTTC-TAGGTGGTAG
* * *
13329893 GCTTGGCAAAT-ATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTTTAGCAGCCTATTTACTC
128 GCTTGGC-AATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTC
* * *
13329957 ACTTTTT-TTTT-CTTTCATCAAATTAACATCTACTAACAAAAAGACAAAGAAGAAGAAATGGGA
192 ACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGA
13330020 GAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATA
257 GAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATA
* * *
13330085 TGCAGGTTAATTTTGACATTGAGTAATGGCAAATATAAAAATATATAATGCTATGTTGATGTCAA
322 TGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAA
* * * *
13330150 TATAGATGTATATTTAAATAAAGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTC
387 TATATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTC
*
13330215 CTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGA
452 CTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGA
* *
13330279 AGAAATAAGTTTGACTGCAAAAGGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATACACAGGT
517 AGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGT
13330344 CAATTGTGATTCGTTATCACCAAAAAGTG
581 CAATTGTGATTCGTTATCACCAAAAAGTG
* *
13330373 AAATCATTTGGAACCTAATGACGCTGATTAGAAACATATAATTAAAATCTATCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13330438 ATAAACTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACATATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* *
13330503 TTGGCAATG-TGGGAGACTGGGTAATGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTACTCAC
130 TTGGCAATGAT-GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
** *
13330567 TTTTTCTTTTGTTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
13330632 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13330697 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * * *
13330762 AATATGTATATATAAATAAAGGTTTATGTAAAGGTTTTGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* * * *
13330827 TTTCCTTTCATCATCCTAACATTGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACA-TCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* ** * * * *
13330891 GAAATAAGTTAGAATGGGAAGAGAATTAAGTTTATCTTAGTGGGCGGAGAGGATAT---A--T--
518 GAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCA
* *
13330949 A---T-A--C-----CA--AAAGA-TT
583 ATTGTGATTCGTTATCACCAAAAAGTG
* * * * * *
13330962 AAATCAGGTTGAACCTAAAAACGCTTATTAGAAACGTATAATTAAAATCCGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * *
13331027 ATACATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCTATTTCTTGGTGGTAGGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * *
13331092 TTGGCAAAGATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTCTAGCAGCCTCTTTACTCACT
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
* * *
13331157 TTTTCTTTTCCTTCCATCAAATTAACATCTACTAACAAAAAGAGAAAGATGAAGAAATGGGAGAA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAA
*
13331222 AAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
260 AAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
* *
13331287 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAAAATATATAATGCTATGTTGATGTCAATAT
325 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATAT
* * * *
13331352 AGATGTATATTTAAATAAAGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTCCTT
390 ATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTT
*
13331417 TTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGAAGA
455 TTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAGA
* *
13331481 AATAAGTTTGACTGCAAAAGGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATACACAGGTCAA
520 AATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCAA
13331546 TTGTGATTCGTTATCACCAAAAAGTG
584 TTGTGATTCGTTATCACCAAAAAGTG
* *
13331572 AAATCATTTGGAACCTAATGACGCTGATTAGAAACATATAATTAAAATCTATCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13331637 ATAAACTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACATATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* *
13331702 TTGGCAATG-TGGGAGACTGGGTAATGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTACTCAC
130 TTGGCAATGAT-GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
** *
13331766 TTTTTCTTTTGTTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
13331831 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13331896 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * * *
13331961 AATATGTATATATAAATAAAGGTTTATGTAAAGGTTTTGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* * * *
13332026 TTTCCTTTCATCATCCTAACATTGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACA-TCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* ** * * * *
13332090 GAAATAAGTTAGAATGGGAAGAGAATTAAGTTTATCTTAGTGGGCGGAGAGGATAT---A--T--
518 GAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCA
* *
13332148 A---T-A--C-----CA--AAAGA-TT
583 ATTGTGATTCGTTATCACCAAAAAGTG
* * * * * *
13332161 AAATCAGGTTGAACCTAAAAACGCTTATTAGAAACGTATAATTAAAATCCGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * *
13332226 ATACATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCTATTTCTTGGTGGTAGGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * *
13332291 TTGGCAAAGATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTCTAGCAGCCTCTTTACTCACT
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
* * *
13332356 TTTTCTTTTCCTTCCATCAAATTAACATCTACTAACAAAAAGAGAAAGATGAAGAAATGGGAGAA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAA
*
13332421 AAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
260 AAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
* *
13332486 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAAAATATATAATGCTATGTTGATGTCAATAT
325 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATAT
* * * *
13332551 AGATGTATATTTAAATAAAGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTCCTT
390 ATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTT
*
13332616 TTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGAAGA
455 TTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAGA
* *
13332680 AATAAGTTTGACTGCAAAAGGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATACACAGGTCAA
520 AATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCAA
13332745 TTGTGATTCGTTATCACCAAAAAGTG
584 TTGTGATTCGTTATCACCAAAAAGTG
* *
13332771 AAATCATTTGGAACCTAATGACGCTGATTAGAAACATATAATTAAAATCTATCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13332836 ATAAACTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACATATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* *
13332901 TTGGCAATG-TGGGAGACTGGGTAATGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTACTCAC
130 TTGGCAATGAT-GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
** *
13332965 TTTTTCTTTTGTTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
13333030 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * *
13333095 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAAAATATATAATGCTATGTTGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * * *
13333160 TAGATGTATATTTAAATAAAGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
*
13333225 TTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGAAG
454 TTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAG
* *
13333289 AAATAAGTTTGACTGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGGGGATATACACAGGTCA
519 AAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCA
13333354 ATTGTGATTCGTTATCACCAAAAAGTG
583 ATTGTGATTCGTTATCACCAAAAAGTG
* * ** *
13333381 AAATCATTTGGAACCTAATGATGCAAATTAGAAACATATAATTAAAATCTATCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13333446 ATAAATTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACTTATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * *
13333511 TTGGCAATGAGGGAGACTGGGTAATGGAGACAACTGTAA-GTTTTTAAGCAGCCTCTTTACACAC
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTG-AAGGTTTTTTAGCAGCCTCTTTACTCAC
*
13333575 TTTTTCTTTTCCTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13333640 AAAGAAGAAATAAGTTTTAATGGGAGAAGATTAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13333705 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * * *
13333770 AATATGTATATATAAATAGAGGTTTATATAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* *
13333835 TTTCCTTTCATCATCTTAACATCGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACATC-AACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* ** * * * *
13333899 GAAATAAGTTTGGATGGGAACAGAATTAAGTTTATCTTAGTGGGCGGAGAGGATAT---A--T--
518 GAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCA
* *
13333957 A---T-A--C-----CA--AAAGA-TT
583 ATTGTGATTCGTTATCACCAAAAAGTG
* * * *
13333970 AAATCAGGTTGAACCTAAAGACGCTTATTAGAAACGTATAATTAAAATCTGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13334035 ATAAATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCTATTTCTTA-GTGGTAGG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTC-TAGGTGGTAGG
* * *
13334099 CTTGGCAAAGATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* * * *
13334164 TTTTTCTTTTCCTTTCATCAAATTAACATCTACTAACAAAAAGACAAAGAAGAAGAAATAGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13334229 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
*
13334294 CAGGTTCATTTTGACATTGTGTAATGGCAAATATAAATATATATAATGCTATGATGATGTC-A-A
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
*
13334357 TATATGTATATATAAGTAAAGGTTT-TCCTAAACG-TTTGGCAGCAACCTCATTACTCACTTTTC
389 TATATGTATATATAAATAAAGGTTTAT-CTAAA-GATTTGGCAGCAACCTCATTACTCACTTTTC
* *
13334420 CTTTTCCTTTCATCATCATAACATCAACTAA-AAAGTTGAAAAAGATGAAGCAATGAGAGCAAAG
452 CTTTTCCTTTCATCATCTTAACATCAACTAACAAA-TTGAAAAAGATGAAGAAATGAGAGCAAAG
* *
13334484 AAGAAATAAGTTTGAATGCGAAAAGATTTAAGTTTATCTGAGTAGGAGGAGAGGATATATACAGG
516 AAGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGG
* * *
13334549 TCAATTGTGATCCGTTATCACGAAAAGGTG
580 TCAATTGTGATTCGTTATCACCAAAAAGTG
* ** * * * *
13334579 AAATAAGTTTGAATGCGAAAAGAATTAAGTTTATCTTTG-TTATAAATCATTTTGAACCTAATGA
1 AAATCA-TTTGAA--CCTAAAG----ACG-----C--TGATTAGAAA-CA-TAT-AA-TTAA--A
** * * *** * * * *
13334643 CGCTG-ATTAGAAACATATAAATGAAATCCATCTTTGTTATA-AACATAAATTAAGAAAGAATTT
46 ATCTGTCTTTG-----T-T--AT-AAA--CA--TAAATTA-AGAA-AGAATTTTAG-ATG-A---
* * * *
13334706 TAGATGACATTCGTCATAAATTTAAACATATTTCTAGCTGGCACGCTTGGCAATG-TGGGAGACT
91 T--AT----TT-GTCATAAATTTAAACATATTTCTAGGTGGTAGGCTTGGCAATGAT-GGAGATT
* * *
13334770 AGGTAATGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTGATC
148 GGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATC
* *
13334835 AAATTAACATCAACTGACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATACGTTTTA
213 AAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTA
*
13334900 ATGGGAGAAGAATAAAGTTTATCTGAGTAAGAAGAGAGAATATATGCAGGTTCATTTTGACATTG
278 ATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTG
* * * * *
13334965 AGTAATTGCAAATATAAAAATATATAATGCTATGTTGATGTCAATATAGATGTATATTTAAATAA
343 AGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATATATATGTATATATAAATAA
* *
13335030 AGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAA
408 AGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAA
* *
13335095 CATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGAAGAAATAAGTTTGACTGCAAA
473 CATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAGAAATAAGTTTGAATGCAAA
* *
13335159 AAGAATTAAGTTTATCTGAGTAGGACGAGAGGATATACACAGGTCAATTGTGATTGGTTATCACC
538 AAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCAATTGTGATTCGTTATCACC
13335224 AAAAAGTG
602 AAAAAGTG
*
13335232 AAATCATTTGGAACCTAATGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13335297 ATAAACTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACATATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * * *
13335362 TTGGCAATG-TGGGAGACTAGTTAAAGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTACTCAC
130 TTGGCAATGAT-GGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* *
13335426 TTTTTCTTTTCCTTTGATCAAATTAACATCAACTGACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13335491 AAAGAAGAAATACGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13335556 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * *
13335621 AATATGTATATATAAATAAAGGTTTATGTAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* *
13335686 TTTCCTTTCATCATCTTAACATCGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACATC-AACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* * * * *
13335750 GAAATAAGTTAGAATGGAAAGAGAATTAAGTTTATCTTAGT-GG-GCAGA-G-------AGG---
518 GAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCA
* *
13335802 A---T-A-T--ATAT-ACC-AAAAGATT
583 ATTGTGATTCGTTATCACCAAAAAG-TG
* * * * *
13335821 AAATCAGGTTGAACCTAAAGACGCTTATTAGAAACGTATAATTAAAATCCGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* *
13335886 ATAAATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCA-ATTTCTTA-GTGGTAG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAA-CATATTTC-TAGGTGGTAG
* * *
13335949 GCTTGGCAAAT-ATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTTTAGCAGCCTATTTACTC
128 GCTTGGC-AATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTC
* * *
13336013 ACTTTTT-TTTT-CTTTCATCAAATTAACATCTACTAACAAAAAGACAAAGAAGAAGAAATGGGA
192 ACTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGA
13336076 GAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATA
257 GAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATA
* *
13336141 TGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAAAATATATAATGCTATGTTGATGTCAA
322 TGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAA
* * * *
13336206 TATAGATGTATATTTAAATAAAGGTTTATCTCAAGATTTGGCAACAACCTCATTACTCACTTTTC
387 TATATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTC
*
13336271 CTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGACGAAGAAATGAGAG-AAAGA
452 CTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGA
* *
13336335 AGAAATAAGTTTGACTGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGGGGATATACACAGGT
517 AGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGT
13336400 CAATTGTGATTCGTTATCACCAAAAAGTG
581 CAATTGTGATTCGTTATCACCAAAAAGTG
* * ** *
13336429 AAATCATTTGGAACCTAATGATGCAAATTAGAAACATATAATTAAAATCTATCTTTGTTATAAAC
1 AAATCATTT-GAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13336494 ATAAATTAAGAAAGAATTTTAGATGACATTTGTCATAAATTTAAACTTATTTCTAGGTGGTACGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * *
13336559 TTGGCAATGAGGGAGACTGGGTAATGGAGACAACTGTAA-GTTTTTAAGCAGCCTCTTTACACAC
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTG-AAGGTTTTTTAGCAGCCTCTTTACTCAC
*
13336623 TTTTTCTTTTCCTTTGATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13336688 AAAGAAGAAATAAGTTTTAATGGGAGAAGATTAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13336753 CAGGTTCATTTTGACATTGAGTAATTGCAAATATAAATATATATAATGCAATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * * *
13336818 AATATGTATATATAAA-AGAGGTTTATATAAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCT
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCT
* *
13336882 TTTCCTTTCATCATCTTAACATCGAA-TAACAAATTGAAAAAGATGAAGAAGTGAGAGCAAAGAG
454 TTTCCTTTCATCATCTTAACATC-AACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAA
* * * * * *
13336946 GAAATAAGTTTGGATGGGAACAA-AATTAAGTTTATCTTAGTGGGCGGAGAGGATAT---A--T-
518 GAAATAAGTTTGAAT-GCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTC
* *
13337004 -A---T-A--C-----CA--AAAGA-TT
582 AATTGTGATTCGTTATCACCAAAAAGTG
* * * *
13337017 AAATCAGGTTGAACCTAAAGACGCTTATTAGAAACGTATAATTAAAATCTGTCTTCGTTATAAAC
1 AAATCA-TTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13337082 ATAAATTAAGAAAGAATTTTGGGTGATATTTGTCATAAATTTAAACCTATTTCTTA-GTGGTAGG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTC-TAGGTGGTAGG
* * *
13337146 CTTGGCAAAGATGGAGATTTGGTAATAGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* * *
13337211 -TTTTCTTTTCCTTTCATCAAATTAACATCTACTAACAAAAAGACAAAGAAGAAGAAATGGGAG-
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
*
13337274 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
*
13337339 CAGGTTCATTTTGACATTGTGTAATGGCAAATATAAATATATATAATGCTATGATGATGTC-A-A
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
*
13337402 TATATGTATATATAAGTAAAGGTTT-TCCTAAACG-TTTGGCAGCAACCTCATTACTCACTTTTC
389 TATATGTATATATAAATAAAGGTTTAT-CTAAA-GATTTGGCAGCAACCTCATTACTCACTTTTC
* *
13337465 CTTTTCCTTTCATCATCATAACATCAACTAA-AAAGTTGAAAAAGATGAAGCAATGAGAGCAAAG
452 CTTTTCCTTTCATCATCTTAACATCAACTAACAAA-TTGAAAAAGATGAAGAAATGAGAGCAAAG
* *
13337529 AAGAAATAAGTTTGAATGCGAAAAGATTTAAGTTTATCTGAGTAGGAGGAGAGGATATATACAGG
516 AAGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGG
* * *
13337594 TCAATTGTGATCCGTTATCACGAAAAGGTG
580 TCAATTGTGATTCGTTATCACCAAAAAGTG
* ** * * * *
13337624 AAATAAGTTTGAATGCGAAAAGAATTAAGTTTATCTTTG-TTATAAATCATTTTGAACCTAATGA
1 AAATCA-TTTGAA--CCTAAAG----ACG-----C--TGATTAGAAA-CA-TAT-AA-TTAA--A
** * * *** * * * *
13337688 CGCTG-ATTAGAAACATATAAATGAAATCCATCTTTGTTATA-AACATAAATTAAGAAAGAATTT
46 ATCTGTCTTTG-----T-T--AT-AAA--CA--TAAATTA-AGAA-AGAATTTTAG-ATG-A---
* * * *
13337751 TAGATGACATTCGTCATACATTTAAACATATTTCTAGCTGGTATGCTTGGCAATGATGGAGACTG
91 T--AT----TT-GTCATAAATTTAAACATATTTCTAGGTGGTAGGCTTGGCAATGATGGAGATTG
* * * * *
13337816 GGTAATGGAGACAACTGTAGGTTTTTTAGCAGCCTCTTTGCCCACTTTTTCATTTCCTTTCCTCA
149 GGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCA
* * *
13337881 AATTAACATTAACTAACAAAAAGTAAAAGATGAAGAAAT-GGAGAAACGAAGAAATAAGTTTTAA
214 AATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAA
* * * *
13337945 TGGGAGAAGAATTAAGTTAATCTGAGTGGGAAGAGAGAATATATGCAGGTTCATTTTGACATTGT
279 TGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTGA
*
13338010 GTAATGGCAAATATAACTATATATAATGCTATGATGATGTCAATATATATATGTATATATAAATA
344 GTAATGGCAAATATAAATATATATAATGCTATGATGATGTC-A-ATATATATGTATATATAAATA
* *
13338075 AAGGTTT-TCCAAA-ACGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCA
407 AAGGTTTATCTAAAGA--TTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCATCATCT
* * *
13338138 TAACATCAACTAA-AAAGTTGAAAAAGATGAAGCAATGAGAGCAAAGAAGAAATAAATTTAAATA
470 TAACATCAACTAACAAA-TTGAAAAAGATGAAGAAATGAGAGCAAAGAAGAAATAAGTTTGAAT-
* * *
13338202 G-AAAGAGAATTAAGTTTATTTGAGTGGGAGGAGAGGATATATACAGGTCAATTGTGATTCGTTA
533 GCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCAATTGTGATTCGTTA
*
13338266 TAACC-AAAAGATG
597 TCACCAAAAAG-TG
* * *
13338279 AAATCATGTTGAACCTAAAGAGGCTGATTAGAAAGATATAATTAAAATTTGTCTTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
*** * * * * *
13338344 ATAAGCAAAGAAAGAA-TTTAGAATGATATTTGTCAAAAATTTAAACCTCTTTCTTGGTGATAGG
65 ATAAATTAAGAAAGAATTTTAG-ATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGG
* * * * * * *
13338408 CTTGGTAGTGATGAAGATTGGGCAATGGAGACAACTAAAGGTTTTTGAGCTGCCTCTTTACAT-A
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTAC-TCA
* * * **
13338472 -GTGTT-TTTTCCTTT-ATCAAATTAACATCAACTAACAAAAATAAAAATTTGAAGAAATGGGAG
193 CTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAG
* *
13338534 AAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGATAGAAAATAT
258 AAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATAT
* * *
13338599 GCAGGTTCCTTTTGACATTGAGTAATGGCAAATATAAACATATATAATGCTATGATGATGGCAAT
323 GCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAAT
* * * * * * * *
13338664 AAATAAGTATATATAAATAAAGGCTTATGTAATGGTTTGGCAACAACCTCATTACACACTTTTCC
388 ATATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCC
* * * * * *
13338729 TTTTCCTTCCATCTTCTTAACATCGAA-TAGCAAATTGAAAAAGATGAAGAAACGGGAGAAAAGA
453 TTTTCCTTTCATCATCTTAACATC-AACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGA
* ** * * * * * *
13338793 AGAAATAAGTTTTAATGGGAGAAGAATAAAATTTATCTGAGT-GAGAAGAGAGAATATATGCAGG
517 AGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAG-GAGGAGAGGATATA-ACAGG
* * * * ***
13338857 TTC-ATTTTGACATTCAGTAATGGA--AAATACAA
580 -TCAATTGTG--ATTC-GTTAT-CACCAAAAAGTG
* * * * * * ** * *
13338889 AAAT-ATAT-AACGCT-ATGACGATG-TCA-ATATATATGTGTATATAAATAATGGTTTATCTGA
1 AAATCATTTGAAC-CTAAAGACGCTGATTAGAAACATAT-AAT-TA-AAAT-CT-GTCT-T-T--
** * ** *** * ** * * * **
13338949 AGATT-TGACAACA-ACCTCATTACTCACTTTTCCAT-TTCCTTTCATCATCTGAACATCAACTA
56 -G-TTAT-A-AACATAAATTAAGAAAGAATTTTAGATGAT-ATTT-GTCA--T-AA-ATTTA--A
* *** ** * ** * * * * * * ** * * *
13339011 ACAAATTGAAAAAAAT-GAAGAAATGAGAGAAAAGA-AGAAATAAGTTTGAATGCGA-AAAAATT
109 ACATATT--TCTAGGTGGTAG-GCT-TG-GCAATGATGGAGAT-TGGGT-AATG-GAGACAACTG
* * ** * * * * ** * *
13339073 AAGATTATTTGAGTAGGAGGAGAGGATATATATAGGTCA-ATTGT-GATTCGTTATCACCAAAAG
166 AAGGTT-TTT---T---A-G-CAGCCTCT-T-TA-CTCACTTTTTCTTTTCCTT-TCATC--AA-
* ** ** * **** * *** * *** ** ** *
13339136 ATGAA-ATCATGTTGAACCTAATGACGCTGAT-TAGAAAATATAATTAAAATCCG-TCTTTGTTA
215 ATTAACATCA-ACT-AACAAAAAGAAAAAGATGAAG-AAATGGGA-GAAAAGAAGAAATAAGTTT
**** * * * * * * *
13339198 TAAACATA-AATTAATAAAGAATTT-TGGATGATATTGGTCATAAATTGAATCATAATTCTTAGT
276 TAATGGGAGAA-GAATAAAG--TTTAT--CTG--A---GTGA-GAA--G-A-GAGAA-T-ATA-T
* * * * * * ** * * *
13339261 GGTAGGCTTGACAATGATGGACATTGGGTAATGGAGATAACTGTAGGT-TTTTTAGCA-GCCTCT
323 -GCAGG-TT--C-AT-TTTGACATTGAGTAATGG-CA-AA-TATAAATATATATA--ATG-CT-A
* * * ** * * * * **** ** **
13339324 TTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATGGAGAA
375 TGA-TGA---TGTC----AATAT-AT-ATG-T-ATAT--A-TAA-ATAAAGGTTTATCTAAAG-A
* **** ** * * * ** ********* * * * **
13339389 TTCGG-AG-AAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGT-TTATCTGAGTGAGAAGA
423 TTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTCAT-CA-TCTTAAC--A-TCA-ACTA
* ** * ** * * * * * *
13339451 GAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAA-AATATATAACGCTATG
482 -ACAA-AT-TG-A-----A---AAAGATGAAGAAAT-G-AGA-GCAAAGAAGAAATAA-G-TTTG
** ** * *** *
13339515 ACGATGTCAATATATATGTGTATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATTA
530 A--ATG-CAA-A-A-A---G-A-AT---TAA--GTTTATCTG-AG-TAGGAGGAGAGGAT-ATAA
* * * * ** * *
13339580 C---TCACTTTTCCATTTCCTTTCATCATCTGAACA-TC
576 CAGGTCAATTGT-GA-TT-CGTT-ATCA-CCAAAAAGTG
* * * ** * * * ** *
13339615 AACTAACAAATTGAA---AAAGATGAAGAAATGAGAGAA-A-AGAA--GAAATAAG--TTTG-AA
1 AA--ATC-ATTTGAACCTAAAGACGCTG--ATTAGA-AACATATAATTAAAATCTGTCTTTGTTA
** * * * * * **
13339670 TGAGAA-A-AAATTAAG--ATTATTTGAGTAGGAGGAGAGGATATATACAGGTCAATTGTGATTC
60 T-A-AACATAAATTAAGAAAGAATTT---TA-GA--TGA-TATTTGT-CA--TAAATT-T-AAAC
* * * * * * * * ** * ** ** *
13339731 GTTATTACCAAAAGATGAAATCATG-TTGAACCTAATGACGTTGATTAGAAAATATAGTTA-AAA
111 -ATATT-TC--TAGGTG--GT-AGGCTTG--GC-AATGATGGAGATTGGGTAATGGAG--ACAAC
** ** * * * *** * ** ** *
13339794 T--CCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT-ATTGGTCAT-AAATTGA
164 TGAAGGT-TTT-TTAGCAGCCT--CTT--TACTCACTTTT-TCTTTTCCTT--TCATCAAATT-A
** **** * * * * * * * *
13339855 ATCAT-AATTCTTAGTGGTAGGCTTGACAATGATG--GACATTGG-GTAATGGAGATAACTGTAG
219 A-CATCAA--C-TA---ACA-AAAAGAAAAAGATGAAGAAATGGGAGAAAAGAAGA-AA---TAA
* * * ***** * * * *** * * ** *
13339916 GTTTT-TTAGCAGCCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTA-ACATCA-ACTAAC
272 GTTTTAATGGGAG-AAGAATA--AAGTTTATC---T-GAGTGA-GAAGAGAGA-AT-ATA-T-GC
* *** *** ** * * ** *
13339978 AAAAAGAAAAAGATGAACAATTCGGAG-AAAAG-AAGAAATAAGT-T-T-TAATGGGA-GAAGA-
325 ---AGGTTCATTTTG-AC-ATT--GAGTAATGGCAA-ATATAAATATATATAATGCTATGATGAT
* * * * * * * * * ** * * ** * *
13340036 ATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGAAA
382 GTCAA-TATATAT--GT-A-TATATA-AATA-A---AGGTTTATCTAAAGATT-TGGCA-GCAAC
* ** * ** ** * * * * * * * ***
13340101 ATACAAAAAT-A-TATAACGCTATGACGATGTCAATATATATGTGTATAT-AAATAATGGTTTAT
435 CT-CATTACTCACT-TTTC-CT-TTTC-CTTTC-AT-CATCT-T-AACATCAACTAA---CAAAT
* ** * * * ******* * *** * * **
13340163 CTG-AAGATTTGACA-ACAACCTCATTACTCACTTTTCCATTTCCTTTCATCAT-CTGAACATCA
488 -TGAAAAAGATGA-AGA-AA--TGA-GA-GCAAAGAAGAAATAAGTTTGA--ATGC--AAAAAGA
* *** ** * * * * * * *** * ** * * * *
13340225 ACTAA-CAAAT-TGAAAAAGATGAAGAAATGAGAGAAAAGAAGAAATAAG-TTTG-AATGA-GAA
542 ATTAAGTTTATCTG-AGTAG--GAGGAGAGGATATAACAGGTCAATTGTGATTCGTTATCACCAA
* *
13340285 AAAATT
604 AAAGTG
* * * * * * **
13340291 AAGATTATTTG-A-GTAGGAGGAGAGGAT-ATATACAGGTCAATTGTGATTCGTTATCACCAAAA
1 AA-ATCATTTGAACCTA--A--AGACGCTGAT-T--A-G--AA-----A--C-ATATAATTAAAA
** * * ** * * *
13340353 GATGAAATCATGTTG-AACCTAATGACGTTGATT-AGAAA-ATATAGTTAAAATCCG-TCTTTGT
47 TCTG---TC-T-TTGTTA--TAA--ACATAAATTAAGAAAGA-AT--TTTAGAT--GATATTTGT
* * * * * * *
13340414 TATAAACATAAATTAATAAAGAATT-T-GGATGATA---TTGGTCATAAATTGAAT-CATAATTC
98 CAT-AA-AT---TTAA-ACATATTTCTAGG-TGGTAGGCTTGG-C---AA-TG-ATGGA-GA-T-
* ** * * *** * * **** * * **
13340473 TTGGTGGTAGGATTGACAA-TTATGGACATTGAGTAATG-GAGATAACTGTAGGTTTTTTAGCAG
147 TGGGTAAT-GGA--GACAACTGAAGGTTTTTTAG-CA-GCCTCTTTACT-CACTTTTT-------
*
13340536 CCTCTTTTCTCAGTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
199 ------------------CTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATG
* *
13340601 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
246 AAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
*
13340666 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTAT
311 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* * * * * * *
13340731 GATAATGTCCATATATTTGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
376 GATGATGTCAATATATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATT
* *
13340796 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
441 ACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
* * * * *
13340861 GAGAGAAAAGAAGAAATAAGTTTGAATACGAAAA-AATTAAGATTATTTGAGTAGGAGGAGAGGA
506 GAGAGCAAAGAAGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGA
*
13340925 TATATACATGTCAATTGTGATTCGTTATCACC-AAAAGATG
571 TATA-ACAGGTCAATTGTGATTCGTTATCACCAAAAAG-TG
* *
13340965 AAATCATGTTGAACCTAATGACGCTGATTAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * * * * *
13341029 ATAAATTAATAAAGAATTTTGGATGATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGA
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * * * * *
13341094 TTGACAATTATGGACATTGAGTAATGGAGATAACTGTAGGTTTTTTAGCAGCCTCTTTACTCAGT
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
* * * *
13341159 TTTTCTTTTCCTTTCATCAAGTTAACATCAACTAAC-AAAAGAAAAAGATGAAGAATTCGAAGAA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAA
13341223 AAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
260 AAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
* * *
13341288 AGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTATGATAATGTCCATAT
325 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATAT
* * * * * *
13341353 ATTTGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATTACTCACTTTTCCAT
390 ATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTT
* *
13341418 TTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAGA
455 TTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAGA
* * * *
13341483 AATAAGTTTGAATGCGAAAA-AATTAAGATTATTTGAGTAGGAGGAGAGGATATATACATGTCAA
520 AATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCAA
13341547 TTGTGATTCGTTATCACC-AAAAGATG
584 TTGTGATTCGTTATCACCAAAAAG-TG
* *
13341573 AAATCATGTTGAACCTAATGACGCTGATTAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * * * * * *
13341637 ATAAATTAATAAAGAATTTTGGATGATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGT
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
* * * * *
13341702 TTGACAATGATGGACATTGGGTAATGGATATAACTGTAGGTTTTTTAGCAGCCTCTTTACTCACT
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
* * *
13341767 TTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATGAAGAATTCGGAGAA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAA
*
13341832 AAGAAGAAATACGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
260 AAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGC
* *
13341897 AGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTATGATAATGTCAATAT
325 AGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATAT
* * * *
13341962 ATTTGTATTTATAAATAAAGGTTTATCTAAAGATTTGGCAACAATCTCATTACTCACTTTTCCTT
390 ATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTT
*
13342027 TTCCTTTCATCATCTTAACATCAACTAAACAAATTGAAAAAGATGAAGAAATGAGAGAAAAGAAG
455 TTCCTTTCATCATCTTAACATCAACT-AACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAG
* * *
13342092 AAATAAGTTTGAATGCGAGAAGAATTAAGTTTATCTGAGTGGGAGGAGAGGATATATACAGGTCA
519 AAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATA-ACAGGTCA
* * *
13342157 ATTGTAATTCGTCATCA-CTAAAAGATG
583 ATTGTGATTCGTTATCACCAAAAAG-TG
* * *
13342184 AAATCATGTTGAACCTAATGACGCTGATTAGAAACGTATAATTAAAATTTGTCTTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* ** * *
13342249 ATAAATTAAGAAAGAATTTTGGATGATATTCCTCATAAATTTAAACCTATTTCTCA-GTGATAGG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCT-AGGTGGTAGG
* ** * * *
13342313 CTTGGGAATGATGGAGATTGGGTAATGGAGACAACTGATTGTTTTTTATCAGCCACTTTACTCAG
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
13342378 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
* * *
13342443 AAA-AAGAAATAAGTTTCAATGGGTGAAGAGTAAAGTTTATCTGAGTGAGAAGAGAG-A-A-ATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * * * *
13342504 AAGGTTCATTTGGGCATTGAGTAATGGCAAATATAAAAATATATAATGCTATGAAGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
* * *
13342569 TATATGTATATATAAATAGAGGTTTATCTAAAGGTTTGGCAACAACCTCATTACTCACTTTTCCC
389 TATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTT--C
* * * *
13342634 TTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAATAGAAAACGATGAAGAAATGACAGA
452 ----CTTTTCCTTTCATCATCTTAACATCAACTAAC-AAATTGAAAAAGATGAAGAAATGAGAGC
** * *
13342699 AAAGAAGAAATAAGTTTGAATGGGAAAAGAATTAAGTTTATCTGAGTGGGCGGAGAGG-------
512 AAAGAAGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAAC
*
13342757 A--T--A---T-A-----TA-CACCAAAATA-TT
577 AGGTCAATTGTGATTCGTTATCACCAAAA-AGTG
* * * *
13342776 AAATAATGTTAAACCTAAGGACGCTGACTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * * *
13342841 ATAAATTAAGAAAGAATTTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTAGGC
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGC
** * *
13342906 TTGGCAATGATGGAGATTGGGTAATAAAGACAATTGAAGGTTTTTTAACAG-C-C--T-CTCACT
130 TTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACT
* * * *
13342966 TTTTCTTTTCCTTTCATCAAATTAACTTCAACTATA-AAGAAGACAAAGATGAGGAAATGGGAGA
195 TTTTCTTTTCCTTTCATCAAATTAACATCAACTA-ACAAAAAGAAAAAGATGAAGAAATGGGAGA
* * * *
13343030 AAAGAAGAAATAAGTGTTAAAGGGAGAAGAATTAAGTTTA--TGAGTGAGAATAGAGAATATATG
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* *
13343093 CAGGTTCATTTTGACATTCAGTAATGGCAAATATAAATATATATAA-ACTATGATGATGTCAATA
324 CAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATA
*
13343157 TATATGTATGTATAAATAAATAAAGGTTTATCTCAAGATTTGGC-GACAACCTCATTACTCACTT
389 TATATGTA--TAT--ATAAATAAAGGTTTATCTAAAGATTTGGCAG-CAACCTCATTACTCACTT
* * *
13343221 TTCCTTTTCCTTTCATCATCTTAACCTCAACTAACAAACT-AGAAAAGATGAAGAAGTTG-GAG-
449 TTCCTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGA-AAAAGATGAAGAA-ATGAGAGC
13343283 -AA-AAG----AA----G-A--C-------A-TAAGTTTATCTGAGT-GGTAGGAGAGGATATAC
512 AAAGAAGAAATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGG-AGGAGAGGATATA-
*
13343326 ACAGGTCAATTGTGATTCATTATCACC-AAAAGATG
575 ACAGGTCAATTGTGATTCGTTATCACCAAAAAG-TG
* * * * *
13343361 AAATCATGTTGAACCTAATGACACTGATTAGAAACATTTAATTAAAATCTATCCTTGTTATAAAC
1 AAATCAT-TTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAAC
* * *
13343426 ATAAATTAAGAAAGAATTTTGGATGATATTCGTCATAAATTTAAACATAATTT-TTGGTGGTAGG
65 ATAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACAT-ATTTCTAGGTGGTAGG
** *
13343490 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTTTAGGTTTTTTAGCAGCTTCTTTACTCAC
129 CTTGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCAC
* * *
13343555 TTTTTCTTTTCCTTTCATCATATTAACATTAACTAACAAAAAGAAAAAGATGAGGAAATGGGAGA
194 TTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGA
* * * *
13343620 AAAAAAGAAATAAGTTTTAATGGGTGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATA
259 AAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATG
* * * * * * * * * * *
13343685 CAGATTCGTTTTGGCATTGAGTACA-GGTAATTGTCAATATATATAATTCAAAGATAATGTC-A-
324 CAGGTTCATTTTGACATTGAGTA-ATGGCAAATATAAATATATATAATGCTATGATGATGTCAAT
* * * * * * * * * *
13343747 CTATATGAACATATATATAAAGGTTTAACTGAAGGTTTGGTAGCAACCTCATTACTAACTTTTTC
388 ATATATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCC
* * * * * *
13343812 TTTTTCTTTAATCATCTTAACATAAATTAGCAAA--GAGAAAATATGAAGAAATGAGAG-AAGAG
453 TTTTCCTTTCATCATCTTAACATCAACTAACAAATTGA-AAAAGATGAAGAAATGAGAGCAA-AG
* *
13343874 AAGAAATAAGTTTGAATG-AGAGAAGAATTAAGTTTAT-TGAGT-GAGAGGAGAGAATATATACA
516 AAGAAATAAGTTTGAATGCA-AAAAGAATTAAGTTTATCTGAGTAG-GAGGAGAGGATATA-ACA
13343936 GGT
578 GGT
13343939 TCATTTTGAC
Statistics
Matches: 12710, Mismatches: 1822, Indels: 1689
0.78 0.11 0.10
Matches are distributed among these distances:
562 2 0.00
563 22 0.00
564 1 0.00
571 1 0.00
573 2 0.00
574 1 0.00
575 1 0.00
578 3 0.00
579 1 0.00
582 3 0.00
583 3 0.00
584 31 0.00
585 324 0.03
586 281 0.02
587 932 0.07
588 359 0.03
589 1669 0.13
590 148 0.01
591 12 0.00
592 281 0.02
593 22 0.00
594 5 0.00
595 1 0.00
596 4 0.00
597 13 0.00
598 4 0.00
599 9 0.00
600 11 0.00
601 1 0.00
602 4 0.00
603 5 0.00
604 6 0.00
605 11 0.00
606 10 0.00
607 81 0.01
608 1235 0.10
609 476 0.04
610 2848 0.22
611 787 0.06
612 704 0.06
613 7 0.00
614 109 0.01
615 7 0.00
616 12 0.00
617 12 0.00
618 1 0.00
619 7 0.00
620 6 0.00
621 13 0.00
622 13 0.00
623 22 0.00
624 11 0.00
625 16 0.00
626 7 0.00
627 14 0.00
628 15 0.00
629 9 0.00
630 4 0.00
631 2 0.00
632 4 0.00
633 4 0.00
634 9 0.00
635 19 0.00
636 11 0.00
637 20 0.00
638 17 0.00
639 16 0.00
640 25 0.00
641 12 0.00
642 14 0.00
643 15 0.00
644 9 0.00
645 13 0.00
646 32 0.00
647 13 0.00
648 10 0.00
649 12 0.00
650 94 0.01
651 189 0.01
652 269 0.02
653 108 0.01
654 122 0.01
655 214 0.02
656 1 0.00
657 1 0.00
658 10 0.00
659 3 0.00
661 2 0.00
662 2 0.00
663 4 0.00
664 2 0.00
666 1 0.00
667 3 0.00
668 15 0.00
669 2 0.00
670 16 0.00
671 15 0.00
672 18 0.00
673 20 0.00
674 14 0.00
675 13 0.00
676 8 0.00
677 8 0.00
679 11 0.00
680 18 0.00
681 8 0.00
682 6 0.00
683 10 0.00
684 7 0.00
685 5 0.00
686 4 0.00
687 4 0.00
688 21 0.00
689 19 0.00
690 8 0.00
691 16 0.00
692 5 0.00
693 10 0.00
694 9 0.00
695 28 0.00
696 26 0.00
697 21 0.00
698 19 0.00
699 25 0.00
700 20 0.00
701 12 0.00
702 12 0.00
703 16 0.00
704 17 0.00
705 16 0.00
706 9 0.00
707 11 0.00
708 5 0.00
709 10 0.00
710 2 0.00
711 13 0.00
712 20 0.00
713 9 0.00
714 18 0.00
715 24 0.00
716 21 0.00
717 13 0.00
718 14 0.00
719 19 0.00
720 26 0.00
721 17 0.00
722 18 0.00
723 14 0.00
724 15 0.00
725 12 0.00
726 8 0.00
727 10 0.00
728 9 0.00
730 2 0.00
731 5 0.00
732 2 0.00
733 1 0.00
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (609 bp):
AAATCATTTGAACCTAAAGACGCTGATTAGAAACATATAATTAAAATCTGTCTTTGTTATAAACA
TAAATTAAGAAAGAATTTTAGATGATATTTGTCATAAATTTAAACATATTTCTAGGTGGTAGGCT
TGGCAATGATGGAGATTGGGTAATGGAGACAACTGAAGGTTTTTTAGCAGCCTCTTTACTCACTT
TTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAAA
AGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGCA
GGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTATGATGATGTCAATATA
TATGTATATATAAATAAAGGTTTATCTAAAGATTTGGCAGCAACCTCATTACTCACTTTTCCTTT
TCCTTTCATCATCTTAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAGAGCAAAGAAGAA
ATAAGTTTGAATGCAAAAAGAATTAAGTTTATCTGAGTAGGAGGAGAGGATATAACAGGTCAATT
GTGATTCGTTATCACCAAAAAGTG
Found at i:13338963 original size:253 final size:253
Alignment explanation
Indices: 13338494--13339062 Score: 802
Period size: 253 Copynumber: 2.2 Consensus size: 253
13338484 TTATCAAATT
* **
13338494 AACATCAACTAACAAAAAT-AAAAATTTGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGG
1 AACATCAACTAAC-AAATTGAAAAAAATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGG
* * * *
13338558 GAGAAGAATAAAGTTTATCTGAGTGAGAAGATAGAAAATATGCAGGTTCCTTTTGACATTGAGTA
65 GAGAAGAATAAAATTTATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTA
* * * * *
13338623 ATGGCAAATATAAACATATATAATGCTATGATGATGGCAATAAATAAGTATATATAAATAAAGGC
130 ATGGAAAATACAAAAATATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGC
* * * * * *
13338688 TTATGTAATGGTTTGGCAACAACCTCATTACACACTTTTCCTTTTCCTTCCATCTTCTT
195 TTATCTAATGATTTGACAACAACCTCATTACACACTTTTCCATTTCCTTCCATCATCTG
* * *
13338747 AACATCGAA-TAGCAAATTGAAAAAGATGAAGAAACGGGAGAAAAGAAGAAATAAGTTTTAATGG
1 AACATC-AACTAACAAATTGAAAAAAATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGG
*
13338811 GAGAAGAATAAAATTTATCTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTCAGTA
65 GAGAAGAATAAAATTTATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTA
* * * * * *
13338876 ATGGAAAATACAAAAATATATAACGCTATGACGATGTCAATATATATGTGTATATAAATAATGGT
130 ATGGAAAATACAAAAATATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGC
* *
13338941 TTATCTGAA-GATTTGACAACAACCTCATTACTCACTTTTCCATTTCCTTTCATCATCTG
195 TTATCT-AATGATTTGACAACAACCTCATTACACACTTTTCCATTTCCTTCCATCATCTG
* *
13339000 AACATCAACTAACAAATTGAAAAAAATGAAGAAATGAGAGAAAAGAAGAAATAAGTTTGAATG
1 AACATCAACTAACAAATTGAAAAAAATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATG
13339063 CGAAAAAATT
Statistics
Matches: 278, Mismatches: 34, Indels: 8
0.87 0.11 0.03
Matches are distributed among these distances:
252 6 0.02
253 268 0.96
254 4 0.01
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.28
Consensus pattern (253 bp):
AACATCAACTAACAAATTGAAAAAAATGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGG
AGAAGAATAAAATTTATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTAA
TGGAAAATACAAAAATATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGCT
TATCTAATGATTTGACAACAACCTCATTACACACTTTTCCATTTCCTTCCATCATCTG
Found at i:13339463 original size:862 final size:861
Alignment explanation
Indices: 13337858--13339671 Score: 2473
Period size: 862 Copynumber: 2.1 Consensus size: 861
13337848 CCTCTTTGCC
* ** * * ** * *
13337858 CACTTTTTCATTTCCTTTCC-TCAAATTAACATTAACTAACAAAAAGTAAAAGATGAAGAAATGG
1 CACTTTTCCATTTCC-TTCCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAGGG
* * * *
13337922 AGAAACGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTAATCTGAGTGGGAAGAGAGAATAT
65 AGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAATTAATCTGAGTGAGAAGAGAGAATAT
** * * ** * *
13337987 ATGCAGGTTCATTTTGACATTGTGTAATGGCAAATATAACTATATATAATGCTATGATGATGTCA
130 ATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTATGACGATGTCA
* *
13338052 ATATATATATGTATATATAAATAAAGGTTTTCCAAAACGTTTGGCAGCAACCTCATTACTCACTT
195 ATATATATATGTATATATAAATAAAGGTTTTCCAAAAC-TTTGACAACAACCTCATTACTCACTT
* * * *
13338117 TTCCTTTTCCTTTCATCATCATAACATCAACTAAAAAGTTGAAAAAGATGAAGCAATGAGAGCAA
259 TTCCATTTCCTTTCATCATCATAACATCAACTAAAAAGTTGAAAAAAATGAAGAAATGAGAGAAA
* *
13338182 AGAAGAAATAAATTTAAATAGAAAGAGAATTAAGTTTATTTGAGTGGGAGGAGAGGATATATACA
324 AGAAGAAATAAATTTAAATAGAAAGAGAATTAAGATTATTTGAGTAGGAGGAGAGGATATATACA
*
13338247 GGTCAATTGTGATTCGTTATAACCAAAAGATGAAATCATGTTGAACCTAAAGAGGCTGATTAGAA
389 GGTCAATTGTGATTCGTTATAACCAAAAGATGAAATCATGTTGAACCTAAAGACGCTGATTAGAA
** * *
13338312 AGATATAATTAAAATTTGTCTTTGTTATAAACATAAGCAAAGAAAGAATTTAGAATGATATTTGT
454 AGATATAATTAAAATCCGTCTTTGTTATAAACATAAACAAAGAAAGAATTTAGAATGATATTGGT
* * ** * ** * *
13338377 CAAAAATTTAAACCTCTTTCTTGGTGATAGGCTTGGTAGTGATGAAGATTGGGCAATGGAGACAA
519 CAAAAATTGAAACATAATTCTTAGTGATAGGCTTGACAATGATGAACATTGGGCAATGGAGACAA
*
13338442 CTAAAGGTTTTTGAGCTGCCTCTTTACATAGTGTTTTTTCCTTTATCAAATTAACATCAACTAAC
584 CTAAAGGTTTTTGAGCAGCCTCTTTACATAGTGTTTTTTCCTTTATCAAATTAACATCAACTAAC
* ** *
13338507 AAAAATAAAAATTTGAAGAAATGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGT
649 AAAAAGAAAAAGATGAAGAAATCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGT
* * * * *
13338572 TTATCTGAGTGAGAAGATAGAAAATATGCAGGTTCCTTTTGACATTGAGTAATGGCAAATATAAA
714 TTATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAA
* * * * *
13338637 CATATATAATGCTATGATGATGGCAATAAATAAGTATATATAAATAAAGGCTTATGT-AATGGTT
779 AATATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGCTTATCTGAA-GATT
*
13338701 TGGCAACAACCTCATTACA
843 TGACAACAACCTCATTACA
* * * *
13338720 CACTTTTCCTTTTCCTTCCATCTTCTTAACATCGAA-TAGCAAATTGAAAAAGATGAAGAAACGG
1 CACTTTTCCATTTCCTTCCATCATCTGAACATC-AACTAACAAATTGAAAAAGATGAAGAAA-GG
*
13338784 GAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAATTTATCTGAGTGAGAAGAGAGAATA
64 GAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAATTAATCTGAGTGAGAAGAGAGAATA
13338849 TATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTATGACGATGTC
129 TATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTATGACGATGTC
* * * *
13338914 -A-ATATATATGTGTATATAAATAATGGTTTATCTGAAGA-TTTGACAACAACCTCATTACTCAC
194 AATATATATATGTATATATAAATAAAGGTTT-TC-CAAAACTTTGACAACAACCTCATTACTCAC
13338976 TTTTCCATTTCCTTTCATCATC-TGAACATCAACTAACAAA-TTGAAAAAAATGAAGAAATGAGA
257 TTTTCCATTTCCTTTCATCATCAT-AACATCAACTAA-AAAGTTGAAAAAAATGAAGAAATGAGA
* * *
13339039 GAAAAGAAGAAATAAGTTTGAATGCGAAA-A-AATTAAGATTATTTGAGTAGGAGGAGAGGATAT
320 GAAAAGAAGAAATAAATTTAAAT-AGAAAGAGAATTAAGATTATTTGAGTAGGAGGAGAGGATAT
* * *
13339102 ATATAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTGAT
384 ATACAGGTCAATTGTGATTCGTTATAACCAAAAGATGAAATCATGTTGAACCTAAAGACGCTGAT
** * * *
13339167 TAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGATA
449 TAGAAAGATATAATTAAAATCCGTCTTTGTTATAAACATAAACAAAGAAAGAATTTAGAATGATA
* * * * *
13339231 TTGGTCATAAATTGAATCATAATTCTTAGTGGTAGGCTTGACAATGATGGACATTGGGTAATGGA
514 TTGGTCAAAAATTGAAACATAATTCTTAGTGATAGGCTTGACAATGATGAACATTGGGCAATGGA
* ** * * * *
13339296 GATAACTGTAGGTTTTTTAGCAGCCTCTTTAC-TCACTTTTTCTTTTCCTTTCATCAAGTTAACA
579 GACAACTAAAGGTTTTTGAGCAGCCTCTTTACAT-A-GTGTT-TTTTCCTTT-ATCAAATTAACA
* *
13339360 TCAACTAACAAAAAGAAAAAGATGGAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAA
640 TCAACTAACAAAAAGAAAAAGATGAAGAAATCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAA
*
13339425 GAATAAAGTTTATCTGAGTGAGAAGAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGA
705 GAATAAAGTTTATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTAATGGA
* * * * * *
13339490 AAATACAAAAATATATAACGCTATGACGATGTCAATATATATGTGTATATAAATAATGGTTTATC
770 AAATACAAAAATATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGCTTATC
*
13339555 TGAAGATTTGACAACAACCTCATTACT
835 TGAAGATTTGACAACAACCTCATTACA
* *
13339582 CACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAATGAG
1 CACTTTTCCATTTCCTTCCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAA-GGG
*
13339647 AGAAAAGAAGAAATAAGTTTGAATG
65 AGAAAAGAAGAAATAAGTTTTAATG
13339672 AGAAAAAATT
Statistics
Matches: 831, Mismatches: 107, Indels: 28
0.86 0.11 0.03
Matches are distributed among these distances:
858 1 0.00
859 128 0.15
860 102 0.12
861 138 0.17
862 337 0.41
863 125 0.15
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (861 bp):
CACTTTTCCATTTCCTTCCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAGGGA
GAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAATTAATCTGAGTGAGAAGAGAGAATATA
TGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTATGACGATGTCAA
TATATATATGTATATATAAATAAAGGTTTTCCAAAACTTTGACAACAACCTCATTACTCACTTTT
CCATTTCCTTTCATCATCATAACATCAACTAAAAAGTTGAAAAAAATGAAGAAATGAGAGAAAAG
AAGAAATAAATTTAAATAGAAAGAGAATTAAGATTATTTGAGTAGGAGGAGAGGATATATACAGG
TCAATTGTGATTCGTTATAACCAAAAGATGAAATCATGTTGAACCTAAAGACGCTGATTAGAAAG
ATATAATTAAAATCCGTCTTTGTTATAAACATAAACAAAGAAAGAATTTAGAATGATATTGGTCA
AAAATTGAAACATAATTCTTAGTGATAGGCTTGACAATGATGAACATTGGGCAATGGAGACAACT
AAAGGTTTTTGAGCAGCCTCTTTACATAGTGTTTTTTCCTTTATCAAATTAACATCAACTAACAA
AAAGAAAAAGATGAAGAAATCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTT
ATCTGAGTGAGAAGAGAGAAAATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAA
TATATAACGCTATGACGATGGCAATAAATAAGTATATATAAATAAAGGCTTATCTGAAGATTTGA
CAACAACCTCATTACA
Found at i:13339878 original size:609 final size:609
Alignment explanation
Indices: 13338710--13343938 Score: 7535
Period size: 609 Copynumber: 8.7 Consensus size: 609
13338700 TTGGCAACAA
* * * * *** * **
13338710 CCTCATTACACACTTTTCCTTTTCCTTCCATCTTCTTAACATCGAA-TAGCAAATTGAAAAAGAT
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATC-AACTAACAAAAAGAAAAAGAT
* *
13338774 GAAGAA-ACGGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAATTTATCTGAGTGAG
65 GAAGAATTC-GGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAG
* * * * *
13338838 AAGAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCT
129 AAGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCT
* *
13338903 ATGACGATGTCAATATATATGTGTATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCA
194 ATGATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCA
*
13338968 TTACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAAATGAAGAA
259 TTACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAA
*
13339033 ATGAGAGAAAAGAAGAAATAAGTTTGAATGCGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGG
324 ATGAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGG
*
13339098 ATATATATAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGC
389 ATATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGC
13339163 TGATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATG
454 TGATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATG
*
13339228 ATATTGGTCATAAATTGAATCATAATTCTTAGTGGTAGGCTTGACAATGATGGACATTGGGTAAT
519 ATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAAT
13339293 GGAGATAACTGTAGGTTTTTTAGCAG
584 GGAGATAACTGTAGGTTTTTTAGCAG
13339319 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
*
13339384 GAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
* * * * *
13339449 GAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* *
13339514 GACGATGTCAATATATATGTGTATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
196 GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
13339579 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
261 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
13339644 GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
326 GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
* *
13339709 ATATACAGGTCAATTGTGATTCGTTATTACCAAAAGATGAAATCATGTTGAACCTAATGACGTTG
391 ATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTG
*
13339774 ATTAGAAAATATAGTTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
456 ATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
*
13339839 ATTGGTCATAAATTGAATCATAATTCTTAGTGGTAGGCTTGACAATGATGGACATTGGGTAATGG
521 ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAATGG
13339904 AGATAACTGTAGGTTTTTTAGCAG
586 AGATAACTGTAGGTTTTTTAGCAG
13339928 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
*
13339993 AACAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
* * * * *
13340058 GAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGAAAATACAAAAATATATAACGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* *
13340123 GACGATGTCAATATATATGTGTATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
196 GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
13340188 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
261 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
13340253 GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
326 GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
*
13340318 ATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGTTG
391 ATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTG
*
13340383 ATTAGAAAATATAGTTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAA-TTTGGATGAT
456 ATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
* * *
13340447 ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGATTGACAATTATGGACATTGAGTAATGG
521 ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAATGG
13340512 AGATAACTGTAGGTTTTTTAGCAG
586 AGATAACTGTAGGTTTTTTAGCAG
* *
13340536 CCTCTTTTCTCAGTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
13340601 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
*
13340666 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* * *
13340731 GATAATGTCCATATATTTGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
196 GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
13340796 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
261 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
13340861 GAGAGAAAAGAAGAAATAAGTTTGAAT-ACGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGA
326 GAGAGAAAAGAAGAAATAAGTTTGAATGA-GAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGA
*
13340925 TATATACATGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCT
390 TATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCT
13340990 GATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGA
455 GATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGA
* * *
13341055 TATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGATTGACAATTATGGACATTGAGTAATG
520 TATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAATG
13341120 GAGATAACTGTAGGTTTTTTAGCAG
585 GAGATAACTGTAGGTTTTTTAGCAG
*
13341145 CCTCTTTACTCAGTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAAC-AAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
*
13341209 AAGAATTCGAAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
*
13341274 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* * *
13341339 GATAATGTCCATATATTTGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
196 GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
13341404 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
261 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
*
13341469 GAGAGAAAAGAAGAAATAAGTTTGAATGCGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
326 GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
*
13341534 ATATACATGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTG
391 ATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTG
13341599 ATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
456 ATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
*
13341664 ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGTTTGACAATGATGGACATTGGGTAATGG
521 ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAATGG
*
13341729 ATATAACTGTAGGTTTTTTAGCAG
586 AGATAACTGTAGGTTTTTTAGCAG
13341753 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
*
13341818 AAGAATTCGGAGAAAAGAAGAAATACGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
*
13341883 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAAGATAAATATATATAATGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* * * * * * *
13341948 GATAATGTCAATATATTTGTATTTATAAATAAAGGTTTATCTAAAGATTTGGCAACAATCTCATT
196 GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
* *
13342013 ACTCACTTTTCCTTTTCCTTTCATCATCTTAACATCAACTAAACAAATTGAAAAAGATGAAGAAA
261 ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACT-AACAAATTGAAAAAGATGAAGAAA
* * * * *
13342078 TGAGAGAAAAGAAGAAATAAGTTTGAATGCGAGAAGAATTAAGTTTATCTGAGTGGGAGGAGAGG
325 TGAGAGAAAAGAAGAAATAAGTTTGAATGAGA-AAAAATTAAGATTATTTGAGTAGGAGGAGAGG
* * *
13342143 ATATATACAGGTCAATTGTAATTCGTCATCACTAAAAGATGAAATCATGTTGAACCTAATGACGC
389 ATATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGC
* ** *
13342208 TGATTAGAAACGTATAATTAAAATTTGTCTTTGTTATAAACATAAATTAAGAAAGAATTTTGGAT
454 TGATTAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGAT
** * * * * ** * ** *
13342273 GATATTCCTCATAAATTTAAACCTATTTCTCAGTGATAGGCTTGGGAATGATGGAGATTGGGTAA
518 GATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAA
* * *
13342338 TGGAGACAACTG-ATTGTTTTTTATCAG
583 TGGAGATAACTGTA-GGTTTTTTAGCAG
* * *
13342365 CCACTTTACTCAGTTTTTCTTTTCCTTTCATCAAATTAACATCAACTAACAAAAAGAAAAAGATG
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
* * * * *
13342430 AAGAAATGGGAGAAAA-AAGAAATAAGTTTCAATGGGTGAAGAGTAAAGTTTATCTGAGTGAGAA
66 AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
* * * *
13342494 GAGAG-A-A-ATGAAGGTTCATTTGGGCATTGAGTAATGGCAAATATAAAAATATATAATGCTAT
131 GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
* * * *
13342556 GAAGATGTCAATATATATGTATATATAAATAGA-GGTTTATCTAAAGGTTTGGCAACAACCTCAT
196 GATGATGTCAATATATATGTATATATAAATA-ATGGTTTATCTGAAGATTTGACAACAACCTCAT
* * * *
13342620 TACTCACTTTTCCCTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAATAGAAAACGAT
260 TACTCACTTTT--C----CATTTCCTTTCATCATCTGAACATCAACTAAC-AAATTGAAAAAGAT
* * * * * *
13342685 GAAGAAATGACAGAAAAGAAGAAATAAGTTTGAATGGGAAAAGAATTAAGTTTATCTGAGTGGGC
318 GAAGAAATGAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAA-AATTAAGATTATTTGAGTAGGA
* * * *
13342750 GGAGAGG--------A--T--A---T-A-----TA-CACCAAAATATTAAATAATGTTAAACCTA
382 GGAGAGGATATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTA
* * * *
13342793 AGGACGCTGACTAGAAACATATAATTAAAATCTGTCTTTGTTATAAACATAAATTAAGAAAGAAT
447 ATGACGCTGATTAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAAT
* * * * * * *
13342858 TTTGGATGATATTCGTCATAAATTTAAACCTATTTCTTGGTGGTAGGCTTGGCAATGATGGAGAT
511 TTTGGATGATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACAT
** * * * *
13342923 TGGGTAATAAAGACAATTGAAGGTTTTTTAACAG
576 TGGGTAATGGAGATAACTGTAGGTTTTTTAGCAG
* * * *
13342957 -C-C--T-CTCACTTTTTCTTTTCCTTTCATCAAATTAACTTCAACTATA-AAGAAGACAAAGAT
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTA-ACAAAAAGAAAAAGAT
* * * * * *
13343016 GAGGAAATGGGAGAAAAGAAGAAATAAGTGTTAAAGGGAGAAGAATTAAGTTTA--TGAGTGAGA
65 GAAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGA
* * *
13343079 ATAGAGAATATATGCAGGTTCATTTTGACATTCAGTAATGGCAAATATAAATATATATAA-ACTA
130 AGAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTA
* * * *
13343143 TGATGATGTCAATATATATGTATGTATAAATAAATAAAGGTTTATCTCAAGATTTGGCGACAACC
195 TGATGATGTCAATATATATGTA--TAT--ATAAATAATGGTTTATCTGAAGATTTGACAACAACC
* * * *
13343208 TCATTACTCACTTTTCCTTTTCCTTTCATCATCTTAACCTCAACTAACAAACT-AGAAAAGATGA
256 TCATTACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGA-AAAAGATGA
* * * *
13343272 AGAAGTTG-GAGAAAAGAAGACATAAGTTT--AT---------CT--G---A-GTG-GT---AGG
320 AGAA-ATGAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGG
* *
13343315 AGAGGATATACACAGGTCAATTGTGATTCATTATCACCAAAAGATGAAATCATGTTGAACCTAAT
384 AGAGGATATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAAT
* * ** * *
13343380 GACACTGATTAGAAACATTTAATTAAAATCTATCCTTGTTATAAACATAAATTAAGAAAGAATTT
449 GACGCTGATTAGAAA-ATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTT
* * * * * *
13343445 TGGATGATATTCGTCATAAATTTAAACATAATTTTTGGTGGTAGGCTTGGCAATGATGGAGATTG
513 TGGATGATATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTG
* *
13343510 GGTAATGGAGACAACTTTAGGTTTTTTAGCAG
578 GGTAATGGAGATAACTGTAGGTTTTTTAGCAG
* *
13343542 CTTCTTTACTCACTTTTTCTTTTCCTTTCATCATA-TTAACATTAACTAACAAAAAGAAAAAGAT
1 CCTCTTTACTCACTTTTTCTTTTCCTTTCATCA-AGTTAACATCAACTAACAAAAAGAAAAAGAT
* * * * * *
13343606 GAGGAAATGGGAGAAAAAAAGAAATAAGTTTTAATGGGTGAAGAATTAAGTTTATCTGAGTGAGA
65 GAAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGA
* * * * * * * * * *
13343671 AGAGAGAATATATACAGATTCGTTTTGGCATTGAGTACA-GGTAATTGTCAATATATATAATTCA
130 AGAGAGAATATATGCAGGTTCATTTTGACATTGAGTA-ATGGCAAATATAAATATATATAATGCT
* * * * * * * * * ** *
13343735 AAGATAATGTC-A-CTATATGAACATATATATAAAGGTTTAACTGAAGGTTTGGTAGCAACCTCA
194 ATGATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCA
* * * * * * * * * *
13343798 TTACTAACTTTTTCTTTTTCTTTAATCATCTTAACATAAATTAGCAAA--GAGAAAATATGAAGA
259 TTACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGA-AAAAGATGAAGA
* * *
13343861 AATGAGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTA-TTGAGT-GAGAGGAG
323 AATGAGAGAAAAGAAGAAATAAGTTTGAATGAGA-AAAAATTAAGATTATTTGAGTAG-GAGGAG
*
13343924 AGAATATATACAGGT
386 AGGATATATACAGGT
13343939 TCATTTTGAC
Statistics
Matches: 4296, Mismatches: 236, Indels: 178
0.91 0.05 0.04
Matches are distributed among these distances:
563 7 0.00
566 2 0.00
567 2 0.00
568 1 0.00
571 2 0.00
573 2 0.00
575 1 0.00
578 1 0.00
579 1 0.00
583 2 0.00
584 3 0.00
585 210 0.05
586 80 0.02
587 140 0.03
588 59 0.01
589 48 0.01
590 103 0.02
591 10 0.00
592 276 0.06
593 13 0.00
598 2 0.00
599 1 0.00
600 1 0.00
602 1 0.00
603 3 0.00
604 3 0.00
606 1 0.00
607 19 0.00
608 1304 0.30
609 1480 0.34
610 59 0.01
611 149 0.03
612 199 0.05
613 5 0.00
614 106 0.02
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (609 bp):
CCTCTTTACTCACTTTTTCTTTTCCTTTCATCAAGTTAACATCAACTAACAAAAAGAAAAAGATG
AAGAATTCGGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATAAAGTTTATCTGAGTGAGAA
GAGAGAATATATGCAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAT
GATGATGTCAATATATATGTATATATAAATAATGGTTTATCTGAAGATTTGACAACAACCTCATT
ACTCACTTTTCCATTTCCTTTCATCATCTGAACATCAACTAACAAATTGAAAAAGATGAAGAAAT
GAGAGAAAAGAAGAAATAAGTTTGAATGAGAAAAAATTAAGATTATTTGAGTAGGAGGAGAGGAT
ATATACAGGTCAATTGTGATTCGTTATCACCAAAAGATGAAATCATGTTGAACCTAATGACGCTG
ATTAGAAAATATAATTAAAATCCGTCTTTGTTATAAACATAAATTAATAAAGAATTTTGGATGAT
ATTGGTCATAAATTGAATCATAATTCTTGGTGGTAGGCTTGACAATGATGGACATTGGGTAATGG
AGATAACTGTAGGTTTTTTAGCAG
Found at i:13344556 original size:41 final size:41
Alignment explanation
Indices: 13344489--13344584 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
13344479 GAATTTTATT
* *
13344489 TTAAAAAGAATTCTAGTCACCTAATTCTAACAATCTTCACC
1 TTAAAAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
*
13344530 TTAACAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
1 TTAAAAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
* *
13344571 TTGATAAGAATTCT
1 TTAAAAAGAATTCT
13344585 CTACGAACAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (41 bp):
TTAAAAAGAATTCTAGTCACCCAATTCTAACAATCTCCACC
Found at i:13344602 original size:17 final size:17
Alignment explanation
Indices: 13344576--13344612 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13344566 CCACCTTGAT
* *
13344576 AAGAATTCTCTACGAAC
1 AAGAACTCTCAACGAAC
13344593 AAGAACTCTCAACGAAC
1 AAGAACTCTCAACGAAC
13344610 AAG
1 AAG
13344613 TTCTCCACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.24, G:0.14, T:0.16
Consensus pattern (17 bp):
AAGAACTCTCAACGAAC
Found at i:13347718 original size:18 final size:17
Alignment explanation
Indices: 13347683--13347721 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
13347673 TTAAAAGATC
13347683 AACACTACCAAATAAAA
1 AACACTACCAAATAAAA
13347700 AACAC-ACCTAAAGTAAAA
1 AACACTACC-AAA-TAAAA
13347718 AACA
1 AACA
13347722 ACAGAAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.64, C:0.23, G:0.03, T:0.10
Consensus pattern (17 bp):
AACACTACCAAATAAAA
Found at i:13350580 original size:243 final size:247
Alignment explanation
Indices: 13349996--13350606 Score: 755
Period size: 251 Copynumber: 2.5 Consensus size: 247
13349986 TTTGTAGCAG
* * * *
13349996 CCTCTTTACTCACTTTTTCTTTTCCATTCATCATATTAACATCTACTAACAAAGAGAAAAAGATG
1 CCTCATTACTCACTTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
* * * *
13350061 AAGAAATGAGAGAAAAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAC
66 AAGAAATGAGACAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
* * * * * * *
13350126 GACAGAATATATACAGGTTCGTTTTGGCATTCAGTAAAGCCAAATGTCAATATATATAAATCTAA
131 GACAGAATATATACAGGCTCATTTAGACATTAAGTAAAGCCAAATATAAATATATATAAATCTAA
* * * * **
13350191 GATGTTTTCAATCTACATACATAGATATAAAGGTTTAACTAAAGGTTTGGCAGTAA
196 GATGATGTCAA-CTA-ATA-ATA-ATATAAAGGTTTAACTAAAGGTTAGCCAACAA
* * * * *
13350247 CCTCATTTCTCACTTTTCCTTTTCCTTTAATCGTCTTAACATAAACTAACAAAGAGAAAAAGATG
1 CCTCATTACTCACTTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
* *
13350312 AAGAAATGAGACAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTTAGTGGGAA
66 AAGAAATGAGACAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
* * * * *
13350377 GAGAGAATATATATAGGCTCATTTAGATATTAAGTAATGGCAAATATAAATATATAT-AATGCTA
131 GACAGAATATATACAGGCTCATTTAGACATTAAGTAAAGCCAAATATAAATATATATAAAT-CTA
* **
13350441 AGATGATGTCAA-T-AT-AT-ATATTAAGGTTTGTCTAAAGGTTAGCCAACAA
195 AGATGATGTCAACTAATAATAATATAAAGGTTTAACTAAAGGTTAGCCAACAA
* ** *
13350490 CCTCATTACTCACTTTTTGTTTTCCTTTCATCATCTTAACATCAACTAACAAATTGAAAATGATG
1 CCTCATTACTCACTTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
* * *
13350555 AAGAAATGAGATAAGAGAGGAAATAAGTTTGAATGGGAGAAGAAATAAGTTT
66 AAGAAATGAGACAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTT
13350607 GAATGACTGA
Statistics
Matches: 311, Mismatches: 48, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
243 130 0.42
245 2 0.01
247 2 0.01
249 1 0.00
250 3 0.01
251 173 0.56
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (247 bp):
CCTCATTACTCACTTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
AAGAAATGAGACAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
GACAGAATATATACAGGCTCATTTAGACATTAAGTAAAGCCAAATATAAATATATATAAATCTAA
GATGATGTCAACTAATAATAATATAAAGGTTTAACTAAAGGTTAGCCAACAA
Found at i:13350599 original size:22 final size:22
Alignment explanation
Indices: 13350569--13350611 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
13350559 AATGAGATAA
*
13350569 GAGAGGAAATAAGTTTGAATGG
1 GAGAAGAAATAAGTTTGAATGG
13350591 GAGAAGAAATAAGTTTGAATG
1 GAGAAGAAATAAGTTTGAATG
13350612 ACTGAGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.23
Consensus pattern (22 bp):
GAGAAGAAATAAGTTTGAATGG
Found at i:13351311 original size:2 final size:2
Alignment explanation
Indices: 13351304--13351332 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13351294 TGATGTCAAA
13351304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13351333 AAGGCTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:13351315 original size:247 final size:252
Alignment explanation
Indices: 13350850--13352001 Score: 1284
Period size: 263 Copynumber: 4.6 Consensus size: 252
13350840 TTTGTAGTAG
* * * * * *
13350850 CCTCGTTACTCACTTTTTCTTTTTCC-TTCATCAT-TTGAACATCAATTAACAAAAAGAAAAAGA
1 CCTCATTACTCAC-TTTTCCTTTTCCTTTAATCATCTT-AACATAAACTAACAAAGAGAAAAAGA
* * * * *
13350913 TGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATAGGAGAAGAATTAAGCTTATCTGAGTTAA
64 TGAAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG
* * * *** *
13350978 AACAGAGAATATATACAGGTTCATTTTGAGATTCAGTAATTTCAAATATAAATATATATAATTCT
129 AAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCT
* *
13351043 AAGATGACGTC---A-ATATATATATATATAT-AGGTTTATTTGAAGGTTTGGCAGCAA
194 AAGATGATGTCAATATATATATATATATATATAAGGTTTATCTGAAGGTTTGGCAGCAA
* * * *
13351097 CCTCATTACAT-ACTTTGCCTTTTCCTTTAATCATTTTAACATTAACTAACAAAGAGAAAACGAT
1 CCTCATTAC-TCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGAT
* * *
13351161 GAAGAACTGTGAGAAGAGAAGAAATAAGTTTGAATAGGAGAAGAATTAAGTTTATCTAAGTGAGA
65 GAAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGA
*
13351226 AGAGAGAATATATACAGGTTCATTTTGACAATGAGTAATGGAAAATATAAATATATATAATGCTA
130 AGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCTA
* * *
13351291 AGATGATGTCAAAATATATATATATATATATATATATATATAAAGGCTTATATGAAGGTTTGGCG
195 AGATGATGTC---------A-ATATATATATATATATATAT-AAGGTTTATCTGAAGGTTTGGCA
*
13351356 GTAA
249 GCAA
* * *
13351360 CCTGATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAGATAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* * * *
13351425 AAGAAATGAAAGAAGAGAAGAAATAAGTTTGAACGGGAGAAGAATTAAGTTTATCTAAGTGAGAA
66 AAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
* * * *
13351490 GAGAGAATATATACAGTTTCATTTTGACGTTGACTAATGGCAAATATAAATATATATAATGCTAA
131 GAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCTAA
* *
13351555 GATGATGTCAATATATATATTTATATATATATAAAGGTTTATCAGAAGGTTTGGCTGCAA
196 GATGATGTCAATATATATA--TATATATATAT-AAGGTTTATCTGAAGGTTTGGCAGCAA
*
13351615 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGTGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
* * * * * *
13351680 AAGAACTGAGAGAAGAGAAGAAATGATTTTGAATGGGAGAAGAATTAGGGTTATTTGTGTGAGAA
66 AAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
* * * * * *
13351745 GAGAGAATATATATACATGTTCATTTTGGCATTAAGTAATAGAAAATATAAATATAAATATTGCT
131 GAGAG-A-ATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCT
* * * *
13351810 AAGATGATG-C-------CTATATATATATA-AAGGTTTATCTGAAGCTTAGCCAGCAA
194 AAGATGATGTCAATATATATATATATATATATAAGGTTTATCTGAAGGTTTGGCAGCAA
* * * * * * * * *
13351860 CCTTAATACTCACTTCTCGTTTTCCTTTCATCATCTTAACATCAACTAACAAATTA-AGAAATAT
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAA-GAGAAAAAGAT
*
13351924 GAAGAGAAC--AGATAAGAGAAGAAATAAGTTTGAATGGGAGAA-AGATTAAGTTTATCTGAGTG
65 G-A-AGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGA-ATTAAGTTTATCTGAGTG
* *
13351986 AGAGGAGAGGATATAT
127 AGAAGAGAGAATATAT
13352002 CAAGGCCAAT
Statistics
Matches: 779, Mismatches: 98, Indels: 60
0.83 0.10 0.06
Matches are distributed among these distances:
243 6 0.01
244 1 0.00
245 128 0.16
246 11 0.01
247 180 0.23
248 3 0.00
249 2 0.00
253 9 0.01
254 1 0.00
255 155 0.20
256 2 0.00
257 56 0.07
260 1 0.00
261 16 0.02
262 1 0.00
263 207 0.27
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (252 bp):
CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
AAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAA
GAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGAAAATATAAATATATATAATGCTAA
GATGATGTCAATATATATATATATATATATAAGGTTTATCTGAAGGTTTGGCAGCAA
Found at i:13351928 original size:245 final size:246
Alignment explanation
Indices: 13351321--13352001 Score: 777
Period size: 255 Copynumber: 2.7 Consensus size: 246
13351311 TATATATATA
* * * * *
13351321 TATATATATATAAAGGCTTATATGAAGGTTTGGCGGTAACCTGATTACTCACTTTTCCTTTTCCT
1 TATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCT
* * *
13351386 TTAATCATCTTAACATAAACTAACAAA-GAGAGATAGATGAAGAAATGAAAGAAGAGAAGAAATA
66 TTAATCATCTTAACATAAACTAACAAATGA-AGAAAGATGAAGAACTGAGAGAAGAGAAGAAATA
* *
13351450 AGTTTGAACGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGA-ATATATACAGTTTCATTT
130 AGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGATATATATACAGTTTCATTT
* * * * * *
13351514 TGACGTTGACTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATATATT
195 TGACATTAACTAATAGAAAATATAAATATAAATAATGCTAAGATGATGTC---------A-C
* *
13351576 TATATATATATAAAGGTTTATCAGAAGGTTTGGCTGCAACCTCATTACTCACTTTTCCTTTTCCT
1 TATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCT
*
13351641 TTAATCATCTTAACATAAACTAACAAAGTGAA-AAAGATGAAGAACTGAGAGAAGAGAAGAAATG
66 TTAATCATCTTAACATAAACTAACAAA-TGAAGAAAGATGAAGAACTGAGAGAAGAGAAGAAATA
* * * * *
13351705 ATTTTGAATGGGAGAAGAATTAGGGTTATTTGTGTGAGAAGAGAGAATATATATACA-TGTTCAT
130 AGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAG-ATATATATACAGT-TTCAT
* * *
13351769 TTTGGCATTAAGTAATAGAAAATATAAATATAAATATTGCTAAGATGATG-C-C
193 TTTGACATTAACTAATAGAAAATATAAATATAAATAATGCTAAGATGATGTCAC
* * * * * * *
13351821 TATATATATATAAAGGTTTATCTGAAGCTTAGCCAGCAACCTTAATACTCACTTCTCGTTTTCCT
1 TATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCT
* * * * *
13351886 TTCATCATCTTAACATCAACTAACAAATTAAGAAATATGAAGAGAAC--AGATAAGAGAAGAAAT
66 TTAATCATCTTAACATAAACTAACAAATGAAGAAAGATG-A-AGAACTGAGAGAAGAGAAGAAAT
*
13351949 AAGTTTGAATGGGAGAA-AGATTAAGTTTATCTGAGTGAGAGGAGAGGATATAT
129 AAGTTTGAATGGGAGAAGA-ATTAAGTTTATCTGAGTGAGAAGAGA-GATATAT
13352002 CAAGGCCAAT
Statistics
Matches: 369, Mismatches: 47, Indels: 30
0.83 0.11 0.07
Matches are distributed among these distances:
244 4 0.01
245 144 0.39
246 2 0.01
247 5 0.01
255 152 0.41
256 4 0.01
257 58 0.16
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (246 bp):
TATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCT
TTAATCATCTTAACATAAACTAACAAATGAAGAAAGATGAAGAACTGAGAGAAGAGAAGAAATAA
GTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGATATATATACAGTTTCATTTT
GACATTAACTAATAGAAAATATAAATATAAATAATGCTAAGATGATGTCAC
Found at i:13352801 original size:247 final size:245
Alignment explanation
Indices: 13352268--13353105 Score: 1155
Period size: 247 Copynumber: 3.4 Consensus size: 245
13352258 AATATCGACT
* * *
13352268 AACAAAAAGAATAAGATGAAGAAATAAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
1 AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
* * * * ** *
13352333 AGCTTATCTGAGGGAGAATAGAGAATATATGTAGGTTCATTTTGACATTGGGTAATGGCAAATAT
66 AGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATAT
* * *
13352398 AAATATATATAATTCTAAGATTATGTC---A-ATATGTATATAAAGGTTTATCTGAAGGTTTGGC
131 AAAT-TATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATCTGAAGG-TTGGC
*
13352459 AGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACA
194 AGCAACCTCATTACTCACTTTTCATTTTCCTTTAATCATCTTAACATAAACA
* *
13352511 AACAACGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTA
1 AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
* * * *
13352576 AGTTTATCTAAGTGAGAAGAGAGAATATATACAAGTCCATTTTGACATCGAGTAATGGAAAATAT
66 AGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATAT
13352641 AAAATTATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATCTGAAGGCTTGGC
131 -AAATTATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATCTGAAGG-TTGGC
* * * * * *
13352706 GGTAAACTCATTACTCACTTTTCGTTTTCCTTTAATCATCTTAAAATAAACG
194 AGCAACCTCATTACTCACTTTTCATTTTCCTTTAATCATCTTAACATAAACA
13352758 AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
1 AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
* * *
13352823 AGTTTATCTAAGTGAGAAGAGAGAATATATATACAGGTTCAATTTGTCATTAAGTAATGGCAAAT
66 AGTTTATCTAAGTGAGAAGAGAG-A-ATATATACAGGTTCATTTTGACATTGAGTAATGGCAAAT
* **
13352888 ATAAA-TATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATTTGAAGGTTACC
129 ATAAATTATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATCTGAAGGTTGGC
* * * *
13352952 TAGCAACCTCATTGCTCACTTTTCATTTTCCTTTCATCATCTTAACATCAACT
194 -AGCAACCTCATTACTCACTTTTCATTTTCCTTTAATCATCTTAACATAAACA
* ** * * * *
13353005 AACTAATTGAAAAAGATAAAGAAATGAGATAAGAGAAGAAATAAGTTTGAATGGTAGAAAAATTA
1 AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
* * * *
13353070 AGTTTATCTGAGTGAGAGGAGAGGATATATAAAGGT
66 AGTTTATCTAAGTGAGAAGAGAGAATATATACAGGT
13353106 CAATTATGAT
Statistics
Matches: 529, Mismatches: 58, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
243 134 0.25
244 4 0.01
245 11 0.02
246 4 0.01
247 338 0.64
248 4 0.01
249 34 0.06
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (245 bp):
AACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
AGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATAT
AAATTATATAATGCTAAGATGATGTCAATATATATATATATAAAGGTTTATCTGAAGGTTGGCAG
CAACCTCATTACTCACTTTTCATTTTCCTTTAATCATCTTAACATAAACA
Found at i:13353401 original size:17 final size:19
Alignment explanation
Indices: 13353371--13353405 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
13353361 ACTAGCAAAA
13353371 AGAGAAAGATGAAGAAATG
1 AGAGAAAGATGAAGAAATG
13353390 AGAG-AAGA-GAAGAAAT
1 AGAGAAAGATGAAGAAAT
13353406 AAGTTTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.60, C:0.00, G:0.31, T:0.09
Consensus pattern (19 bp):
AGAGAAAGATGAAGAAATG
Found at i:13353927 original size:245 final size:241
Alignment explanation
Indices: 13353325--13354400 Score: 1108
Period size: 242 Copynumber: 4.5 Consensus size: 241
13353315 GTAGCCTCTA
* * * * * *
13353325 TACTCACTTTT-TTTTTCTTTCATCATATTAACATCAACTAGCAAAAAGAGAAAGATGAAGAAAT
1 TACTCACTTTTCCTTTCCTTT-ATCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAAAT
** * *
13353389 GAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAAAAAAGCTTATCTAAGTGAGAACAGAGAA
65 GAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAA
* * * * * * *
13353454 AATATATAGGATCATTTTGACATTGAGTAATGGAAAATATAAATAAATATAATTCTAAGATGATG
130 TATATACAGGTTCACTTTGACATTAAGTAATGGAAAATATAAATATATATAATGCTAAGATGATG
*
13353519 TCAATATATATATATATATAGGTTTATCTGAAAGTTTGGCAGCAACCTCAT
195 T-AATATATATATATA-A-AGGTTTATCT-AAAGTTTGGCAGTAACCTCAT
*
13353570 TACTCACTTTT-C---CCTTTAATCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAATT
1 TACTCACTTTTCCTTTCCTTT-ATCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAAAT
* * * * *
13353631 GAGAGAAGAGAAGAAATAAGTTTCAATGGTAGAAGAGTTAAGTTTATCTAAGTAAGAAGCGAGAA
65 GAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAA
* *
13353696 TATATACAGGTTCACTTTGACATTGAGTAATGGAAAATATAAATATATGTAATGCTAAGATGATG
130 TATATACAGGTTCACTTTGACATTAAGTAATGGAAAATATAAATATATATAATGCTAAGATGATG
*
13353761 TCAATATATATATATAAAGGTTTATCTAAAGGTTTGGCGGTAACCTCAT
195 T-AATATATATATATAAAGGTTTATCTAAA-GTTTGGCAGTAACCTCAT
* * * * * * * *
13353810 AAATTAATTTTCCTTTTCCTTTAGTCATCTTCACATAAACAAACAAAGAGAAAAAGATAAAGAAA
1 TACTCACTTTTCC-TTTCCTTTA-TCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAAA
* * * *
13353875 TGAGAGAAGAGAAGAAACAAGTTTGCATCGGAGAAGAATTAAGTTTATCTAAGTGGGAAGAGAGA
64 TGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGA
*
13353940 ATATATACAGGTTCAATTTGACATTAAGTAATGGAAAATATAAATATATAT-A---T---AT-A-
129 ATATATACAGGTTCACTTTGACATTAAGTAATGGAAAATATAAATATATATAATGCTAAGATGAT
* * * * ** ** *
13353996 -T-ATAGATTTATCTGAAGGTTTGGC-AGCAA-CCT--CA-TTA-CTCACT
194 GTAATATATATATATAAAGGTTTATCTA--AAGTTTGGCAGTAACCTCA-T
* ** * *
13354039 T-TTC-CTTTTCCTTT-AATCATTCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAACA
1 TACTCACTTTTCCTTTCCTTTA-TCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAA-A
*
13354101 -GAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGA
64 TGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGA
* * * *
13354165 ATATATACAGGTTCACTTTGACATTAAGTAATGGCATATATAAACATGTATAATGCTAAGATGAT
129 ATATATACAGGTTCACTTTGACATTAAGTAATGGAAAATATAAATATATATAATGCTAAGATGAT
* * * * * *
13354230 GTAA-ATATATATATTAAGGTTTATCTGAAGGTTAGCCAGAAACTTCAT
194 GTAATATATATATATAAAGGTTTATCT-AAAGTTTGGCAGTAACCTCAT
* ** * **
13354278 TACTCGCTTTTTGTTTTCCTTTCATCATCTTAACATTAACTAACAAATTGAAAAAGATGAAGAAA
1 TACTCAC-TTTTCCTTTCCTTT-ATCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAAA
* * * * * *
13354343 TGAGATAAGAGAAGAAATAAGTTTGAGTGGGAGAAAAACTAAGTTAATCTGAGTGAGA
64 TGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGA
13354401 GGGGAGGCTT
Statistics
Matches: 691, Mismatches: 105, Indels: 72
0.80 0.12 0.08
Matches are distributed among these distances:
225 144 0.21
226 5 0.01
227 6 0.01
228 5 0.01
229 4 0.01
230 1 0.00
232 4 0.01
233 18 0.03
234 2 0.00
235 18 0.03
236 1 0.00
237 2 0.00
238 4 0.01
239 6 0.01
240 38 0.05
241 4 0.01
242 180 0.26
243 90 0.13
244 3 0.00
245 156 0.23
ACGTcount: A:0.42, C:0.10, G:0.18, T:0.30
Consensus pattern (241 bp):
TACTCACTTTTCCTTTCCTTTATCATCTTAACATAAACTAACAAAAAGAAAAAGATGAAGAAATG
AGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAAT
ATATACAGGTTCACTTTGACATTAAGTAATGGAAAATATAAATATATATAATGCTAAGATGATGT
AATATATATATATAAAGGTTTATCTAAAGTTTGGCAGTAACCTCAT
Found at i:13354017 original size:221 final size:224
Alignment explanation
Indices: 13353764--13354208 Score: 655
Period size: 225 Copynumber: 2.0 Consensus size: 224
13353754 GATGATGTCA
* * * *
13353764 ATATATATATATAAAGGTTTATCTAAAGGTTTGGCGGTAACCTCATAAATTAATTTTCCTTTTCC
1 ATATATATATATAAAGATTTATCTAAAGGTTTGGCAGCAACCTCATAAATCAATTTTCCTTTTCC
*
13353829 -TT-T-AGTCATCTTCACATAAACAAACAAAGAGAAAAAGATAAAGAA-ATGAGAGAAGAGAAGA
66 TTTATCAGTCATCTTAACATAAACAAACAAAGAGAAAAAGATAAAGAACA-GAGAGAAGAGAAGA
* *
13353890 AACAAGTTTGCATCGGAGAAGAATTAAGTTTATCTAAGTGGGAAGAGAGAATATATACAGGTTCA
130 AACAAGTTTGAATCGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCA
13353955 ATTTGACATTAAGTAATGGAAAATATAAAT
195 ATTTGACATTAAGTAATGGAAAATATAAAT
* * * * *
13353985 ATATATATATATATAGATTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCC
1 ATATATATATATAAAGATTTATCTAAAGGTTTGGCAGCAACCTCATAAATCAATTTTCCTTTTCC
* * *
13354050 TTTAATCATTCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAACAGAGAGAAGAGAAGA
66 TTT-ATCAGTCATCTTAACATAAACAAACAAAGAGAAAAAGATAAAGAACAGAGAGAAGAGAAGA
* * *
13354115 AATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAGAATATATACAGGTTCA
130 AACAAGTTTGAATCGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCA
* * *
13354180 CTTTGACATTAAGTAATGGCATATATAAA
195 ATTTGACATTAAGTAATGGAAAATATAAA
13354209 CATGTATAAT
Statistics
Matches: 198, Mismatches: 21, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
221 56 0.28
222 2 0.01
224 1 0.01
225 138 0.70
226 1 0.01
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (224 bp):
ATATATATATATAAAGATTTATCTAAAGGTTTGGCAGCAACCTCATAAATCAATTTTCCTTTTCC
TTTATCAGTCATCTTAACATAAACAAACAAAGAGAAAAAGATAAAGAACAGAGAGAAGAGAAGAA
ACAAGTTTGAATCGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCAA
TTTGACATTAAGTAATGGAAAATATAAAT
Found at i:13355219 original size:245 final size:241
Alignment explanation
Indices: 13354633--13355756 Score: 1466
Period size: 245 Copynumber: 4.6 Consensus size: 241
13354623 TTTGTAGTAG
* * * * * ** *
13354633 CCTCTTTACTCACTTTTACTTTTTCTTTCATCATATTAACATCGACTAACAAAAGAATAAGATGA
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAGAGAA-AAGATGA
* * * * * *
13354698 AGAATTAAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTATGCTTATTTGAGTGAGAAT
65 AGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAG-TTATCTAAGTGAGAAG
* * * * *
13354763 AGAGAACATATATAGGTTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATTCTAAG
129 AGAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAAG
* * *
13354828 ATTATGTCA-ATATGTATATAAAGGTTTATCTGAAGGTTTGGTAGCAA
194 ATGATGTCATATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
* * *
13354875 CCTCATTGCTCAATTTTCCTTTTCCTTTAATCATCTTAACATAAAGTAACAAAGAGAAAATGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAAC-AAGAGAAAA-GATG
* *
13354940 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGGGAAGAATTATGTTCATCTAAGTGAGAA
64 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTT-ATCTAAGTGAGAA
* * *
13355005 GGGAGAATATATACAGGTTCAATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAA
128 GAGAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAA
* * *
13355070 GATGATGTCAATATATATATATAAAGGCTTATATGAAGGTTTGGCGGCAA
193 GATGATGTC-ATATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
* * *
13355120 CTTGATTACTC-GTTTGTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAGGAGATAAAGAT
1 CCTCATTACTCACTTT-TCCTTTTCCTTTAATCATCTTAACATAAACTAACAA-GAGA-AAAGAT
* *
13355184 GAAGAAGTGAGAGAAGAGAAGAAATAACTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGA
63 GAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAG-TTATCTAAGTGAGA
* * *
13355249 AGAGAAAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTA
127 AGAGAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTA
*
13355314 AGATGATGTCAATATATATATATAAAGGTTTATCTGAAGGTTTGGCTGCAA
192 AGATGATGTC-ATATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
* * *
13355365 CCTCATTACTCACTTTTTCTTTTCCTTTAATCATCTTAACACAAACTAACATATAGAAAAAGATG
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACA-AGAG-AAAAGATG
* * **
13355430 AAGAACTGAGAGAAGAGAAGAAATAAGTTTGAATAGGAGAAGAATTAAGGTTATCTGTGTGAGAA
64 AAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAA-GTTATCTAAGTGAGAA
13355495 GAGAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAA
128 GAGAGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAA
* *
13355560 GATGATGTC-TATATATATATAAAGGTTTATCTGAAGGTTAGCCAGCAA
193 GATGATGTCATATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
* * * * *
13355608 CCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACTAACAA-ATTAAGAAATAT
1 CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAGA--GA-AAAGAT
* * * * * *
13355672 GAAGAAAAGAGATAAGAGAAGAAATATGTTTGAATGGGAGAAAAATTAAGTTTATCTGAGTAAG-
63 GAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAG-TTATCTAAGTGAGA
* *
13355736 AGTAGAGGATATATAAAGGTT
127 AG-AGAGAATATATACAGGTT
13355757 AATTATGATT
Statistics
Matches: 781, Mismatches: 83, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
241 1 0.00
242 49 0.06
243 288 0.37
244 6 0.01
245 426 0.55
246 11 0.01
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (241 bp):
CCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAGAGAAAAGATGAA
GAAATGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTATCTAAGTGAGAAGAG
AGAATATATACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAAGAT
GATGTCATATATATATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
Found at i:13355750 original size:488 final size:484
Alignment explanation
Indices: 13354633--13355750 Score: 1537
Period size: 488 Copynumber: 2.3 Consensus size: 484
13354623 TTTGTAGTAG
* * * * *
13354633 CCTCTTTACTCACTTTTACTTTTTCTTTCATCATATTAACATCGACTAACAAAAGAATAAGATGA
1 CCTCATTACTCACTTTT-CTTTTCCTTTCATCATCTTAACATCAACTAACAAAAGAAAAAGATGA
* * * *
13354698 AGAATTAAGAG-AAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTATGCTTATTTGAGTGAGAA
65 AGAA--AAGAGAAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
* * * *
13354762 TAGAGAACATATATAGGTTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATTCTAA
128 TAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATGCTAA
* * *
13354827 GATTATGTCAATATGTATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTGCTCAATTTT
193 GATGATGTCAATATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTACTCAATTTT
* * *
13354892 CCTTTTCCTTTAATCATCTTAACATAAAGTAACAAAGAGAAAATGATGAAGAAATGAGAGAAGAG
258 CCTTTTCCTTTAATCATCTTAACACAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAG
* * * *
13354957 AAGAAATAAGTTTGAATGGGGGAAGAATTATGTTCATCTAAGTGAGAAGGGAGAATATATACAGG
323 AAGAAATAAGTTTGAATAGGAGAAGAATTAGGTTCATCTAAGTGAGAAGAGAGAATATATACAGG
13355022 TTCAATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATA
388 TTCAATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTC-ATATATA
* * *
13355087 TATATAAAGGCTTATATGAAGGTTTGGCGGCAA
452 TATATAAAGGCTTATATGAAGGTTAGCCAGCAA
* * * * * * *
13355120 CTTGATTACTC-GTTTGTCCTTTTCCTTTAATCATCTTAACATAAACTAACAAGGAGATAAAGAT
1 CCTCATTACTCACTTT-T-CTTTTCCTTTCATCATCTTAACATCAACTAACAA-AAGAAAAAGAT
** * *
13355184 GAAGAAGTGAGAGAAGAGAAGAAATAACTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGA
63 GAAGAAAAGAGA-AAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAG-
* *
13355249 AG-AGAAAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCT
126 AGTAGAGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATGCT
13355313 AAGATGATGTCAATATATATATATAAAGGTTTATCTGAAGGTTTGGCT-GCAACCTCATTACTCA
191 AAGATGATGTC-A-ATATATATATAAAGGTTTATCTGAAGGTTTGG-TAGCAACCTCATTACTCA
* * * * *
13355377 CTTTTTCTTTTCCTTTAATCATCTTAACACAAACTAACATATAGAAAAAGATGAAGAACTGAGAG
253 ATTTTCCTTTTCCTTTAATCATCTTAACACAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAG
**
13355442 AAGAGAAGAAATAAGTTTGAATAGGAGAAGAATTAAGGTT-ATCTGTGTGAGAAGAGAGAATATA
318 AAGAGAAGAAATAAGTTTGAATAGGAGAAGAATT-AGGTTCATCTAAGTGAGAAGAGAGAATATA
* *
13355506 TACAGGTTCATTTTGACATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTC-T
382 TACAGGTTCAATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAT
* *
13355570 ATATATATATAAAGGTTTATCTGAAGGTTAGCCAGCAA
447 ATATATATATAAAGGCTTATATGAAGGTTAGCCAGCAA
** *
13355608 CCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACTAACAAATTAAGAAATATG
1 CCTCATTACTCACTTTTC-TTTTCCTTTCATCATCTTAACATCAACTAACAAAAGAA-AAAGATG
* * *
13355673 AAGAAAAGAGATAAGAGAAGAAATATGTTTGAATGGGAGAAAAATTAAGTTTATCTGAGTAAGAG
64 AAGAAAAGAGA-AAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
*
13355738 TAGAGGATATATA
128 TAGAGAATATATA
13355751 AAGGTTAATT
Statistics
Matches: 547, Mismatches: 71, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
486 6 0.01
487 42 0.08
488 272 0.50
489 5 0.01
490 217 0.40
491 5 0.01
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (484 bp):
CCTCATTACTCACTTTTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAAGAAAAAGATGAA
GAAAAGAGAAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGTAG
AGAATATATACAAGTTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATGCTAAGAT
GATGTCAATATATATATAAAGGTTTATCTGAAGGTTTGGTAGCAACCTCATTACTCAATTTTCCT
TTTCCTTTAATCATCTTAACACAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAG
AAATAAGTTTGAATAGGAGAAGAATTAGGTTCATCTAAGTGAGAAGAGAGAATATATACAGGTTC
AATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCATATATATATA
TAAAGGCTTATATGAAGGTTAGCCAGCAA
Found at i:13356548 original size:245 final size:239
Alignment explanation
Indices: 13355969--13356603 Score: 775
Period size: 245 Copynumber: 2.6 Consensus size: 239
13355959 TTTGTAGTAG
* * * *
13355969 CCTCTTTACTCACTTTTACTTTTTCTTTCATCATATTAACATCGACTAACAAAAGAATAAGATGA
1 CCTCATTACTCACTTTTACTTTTCCTTTCATCATCTTAACATCAACTAACAAAAG-A-AAGATGA
* * * *
13356034 AGAATTGAGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAAT
64 AGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAG-AG
* * * * * * **
13356099 AGAGAATATATATAGGTTCATTTTGACATTGAGTAATGGCAAAAATAAATAAATATAATTCTATG
128 GGAGAATATATACAGGTTCAATTTGAAATTAAGTAATGGCAAAAATAAATAAATATAATGCTAAA
* * ***
13356164 ATTATGTCAATATGTATATAAAGGTTTATCTGAAGGTTTGGCAGCAA
193 ATAATGTCAATATATATATAAAGGTTTATCTGAAGGTTACCCAGCAA
* * * ** *
13356211 CCTCATTGCTCAATTTTCCTTTTCCTTGAATCATCTTAACATAAACTAACAAAGAGAAAAAGATG
1 CCTCATTACTCACTTTTACTTTTCCTTTCATCATCTTAACATCAACTAACAAA-AG--AAAGATG
* * *
13356276 AAGAAATGATAGAAGAGAAGAAATAAGTTTAAATGGGGGAAGAATTAAGTTTATCTAAGTGAGCA
63 AAGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAG-A
* *
13356341 GGGAGAATATATACAGGTTCAATTTGAAATTAAGTAATGGCAAATATAAATATATATAATGCTAA
127 GGGAGAATATATACAGGTTCAATTTGAAATTAAGTAATGGCAAAAATAAATAAATATAATGCTAA
*
13356406 AATAATGTCAATATATATATATAAAGGTTTATTTGAAGGTTACCCAGCAA
192 AATAATGTC-A-ATATATATATAAAGGTTTATCTGAAGGTTACCCAGCAA
* ** * *
13356456 CGTCATTACTCACTTTTTGTTTTCCTTTCATCATCTTAACATCAATTAACTAATTAAGAAATATG
1 CCTCATTACTCACTTTTACTTTTCCTTTCATCATCTTAACATCAACTAAC-AA--AAGAAAGATG
* * *
13356521 AAGAAATGAGATAAGAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAGTTTATCTGAGTTAGAG
63 AAGAAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAG
*
13356586 GAGAGGATATATACAGGT
128 G-GAGAATATATACAGGT
13356604 CAGTTGTGAT
Statistics
Matches: 334, Mismatches: 51, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
242 43 0.13
243 128 0.38
244 6 0.02
245 152 0.46
246 2 0.01
247 2 0.01
248 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (239 bp):
CCTCATTACTCACTTTTACTTTTCCTTTCATCATCTTAACATCAACTAACAAAAGAAAGATGAAG
AAATGAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAGGGA
GAATATATACAGGTTCAATTTGAAATTAAGTAATGGCAAAAATAAATAAATATAATGCTAAAATA
ATGTCAATATATATATAAAGGTTTATCTGAAGGTTACCCAGCAA
Found at i:13356817 original size:848 final size:849
Alignment explanation
Indices: 13355138--13357431 Score: 3161
Period size: 848 Copynumber: 2.7 Consensus size: 849
13355128 CTCGTTTGTC
* * * * * *
13355138 CTTTTCCTTTAATCATCTTAACATAAACTAAC-AAGGAGATAAAGATGAAGAAGTGAGAGAAGAG
1 CTTTTTCTTTCATCATATTAACATCAACTAACAAAAGA-AT-AAGATGAAGAAATGAGAGAAGAG
* * *
13355202 AAGAAATAACTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAAAATATATACAAG
64 AAGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAAAATATATACAGG
* * *
13355267 TTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATA
129 TTCATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATTCTAAGATGATGTCAATATATG
* *
13355332 TATATAAAGGTTTATCTGAAGGTTTGGCTGCAACCTCATTACTCACTTTTTCTTTTCCTTTAATC
194 TATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATC
* * * *
13355397 ATCTTAACACAAACTAACATATAGAAAAAGATGAAGAACTGAGAGAAGAGAAGAAATAAGTTTGA
259 ATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGA
* * **
13355462 ATAGGAGAAGAATTAAGGTTATCTGTGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTA
324 ATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTA
13355527 AGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTC--TATATATATATAAAGGTTTAT
389 AGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATATATATAAAGGTTTAT
*
13355590 CTGAAGGTTAGCCAGCAACCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACT
454 TTGAAGGTTAGCCAGCAACCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACT
* *
13355655 AACAAATTAAGAAATATGAAGAAAAGAGATAAGAGAAGAAATATGTTTGAATGGGAGAAAAATTA
519 AAC-AATTAAGAAATATGAAGAAAAGAGATAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTA
* * * *
13355720 AGTTTATCTGAGTAAGAGTAGAGGATATATAAAGGTTAATTATGATTCGTTATCATCAAAAGATC
583 AGTTTATCTGAGTAAGAGGAGAGGATATATAAAGGTCAATTATGATTCATTATCACCAAAAGATC
* * *
13355785 TAGAAATCATGTTGAACCTAAAGACACTGATTAGAAACATATAATTAAAATCCATCTTTGTTATA
648 TAGAAATCATGTTGAACCTAAAGACACAGATTAGAAACATATAATTAAAATACATCTTTGTTACA
* * *
13355850 AACATGAACTAAGAAAGAATTTTGGATGATTTCCCTCATAAATTTAAACCTATTTCTTGGTGGTA
713 AACATGAACTAAAAAAGAATTTTGGATGATTTCCCTCATAAATTTAAACATATTTCTTCGTGGTA
* * *** * *
13355915 TGCTTGGTAATGATGGAGACTAGGTAATATATACAACTGAAGGCTTTGTAGTAGCCTCTTTACTC
778 GGCCTCACAATGATGAAGACTAGGTAATATAGACAACTGAAGGCTTTGTAGTAGCCTCTTTACTC
13355980 ACTTTTA
843 ACTTTTA
* *
13355987 CTTTTTCTTTCATCATATTAACATCGACTAACAAAAGAATAAGATGAAGAATTGAGAGAAGAGAA
1 CTTTTTCTTTCATCATATTAACATCAACTAACAAAAGAATAAGATGAAGAAATGAGAGAAGAGAA
* * * *
13356052 GAAATAAGTTTGAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAATAGAGAATATATATAGGTT
66 GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAAAATATATACAGGTT
* * *
13356117 CATTTTGACATTGAGTAATGGCAAAAATAAATAAATATAATTCTATGATTATGTC-A-ATATGTA
131 CATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATTCTAAGATGATGTCAATATATGTA
* * *
13356180 TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTGCTCAATTTTCCTTTTCCTTGAATCAT
196 TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCAT
* *
13356245 CTTAACATAAACTAACAAAGAGAAAAAGATGAAGAAATGATAGAAGAGAAGAAATAAGTTTAAAT
261 CTTAACATAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAAT
* * * * *
13356310 GGGGGAAGAATTAAGTTTATCTAAGTGAGCAGGGAGAATATATACAGGTTCAATTTGAAATTAAG
326 GGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAG
* *
13356375 TAATGGCAAATATAAATATATATAATGCTAAAATAATGTCAATATATATATATAAAGGTTTATTT
391 TAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATATATATAAAGGTTTATTT
* * * *
13356440 GAAGGTTACCCAGCAACGTCATTACTCACTTTTTGTTTTCCTTTCATCATCTTAACATCAATTAA
456 GAAGGTTAGCCAGCAACCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACTAA
* *
13356505 CTAATTAAGAAATATGAAGAAATGAGATAAGAGAAGAAATAAGTTTTAATGGGAGAAGAATTAAG
521 C-AATTAAGAAATATGAAGAAAAGAGATAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAG
* * * * *
13356570 TTTATCTGAGTTAGAGGAGAGGATATATACAGGTCAGTTGTGATTCATTATCACCATAAGATCTA
585 TTTATCTGAGTAAGAGGAGAGGATATATAAAGGTCAATTATGATTCATTATCACCAAAAGATCTA
** *
13356635 GAAATCATGTTGAACCTAAAGATGCAGATTAGAAACATATAATTAAAATACGTCTTTGTTACAAA
650 GAAATCATGTTGAACCTAAAGACACAGATTAGAAACATATAATTAAAATACATCTTTGTTACAAA
* * *
13356700 CATGAACTAAAAAAGAATTTTGGATGGTTTTCCTCATAAATTTAAACATATTTTTTCGTGGTAGG
715 CATGAACTAAAAAAGAATTTTGGATGATTTCCCTCATAAATTTAAACATATTTCTTCGTGGTAGG
* * * * *
13356765 CCTCACACTGTTGAAGA-TTGGCTAATATAGACAACTGAAGGTTTTTTAGTAGCCTCTTTACTCA
780 CCTCACAATGATGAAGACTAGG-TAATATAGACAACTGAAGGCTTTGTAGTAGCCTCTTTACTCA
*
13356829 CTTTTT
844 CTTTTA
* * *
13356835 CTTTTTCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATGGGAGAAAAGA
1 CTTTTTCTTTCATCATATTAACATCAACTAAC-AAAAGAATAAGATGAAGAAATGAGAGAAGAGA
* * * *
13356900 AGAAATAAGTTTTATTGGGAGAAGAATTAAGTTTATTTGAGTGAGAGGAGAAAATATATACAGGT
65 AGAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAAAATATATACAGG-
** * * * * * *
13356965 TTGTTTTTG-CATTAAGTAAAGG-AAAATGTCAGTATATAAAATTCTAAGATGATGTCAATATAT
129 TTCATTTTGACATTGAGTAATGGCAAAA-ATAAATATATATAATTCTAAGATGATGTCAATATAT
* ** * * *
13357028 AAAGTTACATATAAAGGTTTAACAAAAGGTTTGGCATCAACTTCATTACTCACTTTTCCTATTCC
193 ---G-T--ATATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCC
* *
13357093 TTTAGTCATCTTAACATAAACTAACTAAGAGAAAAAGATGAAG-AATGAGAGAAGAGAAGAAATA
252 TTTAATCATCTTAACATAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATA
*
13357157 AGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTT
317 AGTTTGAATGGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTT
*
13357222 GACATTAAGTAATGGCAAATATAAAAATATATAATGCTAAGATGATGTCAATAATAATGTATATA
382 GACATTAAGTAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAAT-AT-A--TATATA
* * * * * * * *
13357287 TACAAAGGTTTATTTTAACGTTTGGCAGCAACCTTATTACTCACTTTTCCTTTTCCTCTCATAAT
443 T--AAAGGTTTATTTGAAGGTTAGCCAGCAACCTCATTACTCACTTTTCGTTTTCCTTTCATCAT
* * * * * *
13357352 ATTAACATCAACTAACAA--ACAGAAAACGATGAAGCAACGGGAGAAGAGAAGAAATAAGTTTGA
506 CTTAACATCAACTAACAATTA-AG-AAA-TATGAAGAAAAGAGATAAGAGAAGAAATAAGTTTGA
**
13357415 ATAAGAGAAGAATTAAG
568 ATGGGAGAAGAATTAAG
13357432 CTTACCTAAG
Statistics
Matches: 1268, Mismatches: 153, Indels: 35
0.87 0.11 0.02
Matches are distributed among these distances:
846 219 0.17
847 4 0.00
848 537 0.42
849 146 0.12
850 12 0.01
851 4 0.00
854 1 0.00
855 1 0.00
856 127 0.10
857 91 0.07
858 1 0.00
859 1 0.00
860 9 0.01
861 5 0.00
862 110 0.09
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (849 bp):
CTTTTTCTTTCATCATATTAACATCAACTAACAAAAGAATAAGATGAAGAAATGAGAGAAGAGAA
GAAATAAGTTTGAATGGGAGAAGAATTAAGTTTATCTGAGTGAGAAGAGAAAATATATACAGGTT
CATTTTGACATTGAGTAATGGCAAAAATAAATATATATAATTCTAAGATGATGTCAATATATGTA
TATAAAGGTTTATCTGAAGGTTTGGCAGCAACCTCATTACTCACTTTTCCTTTTCCTTTAATCAT
CTTAACATAAACTAACAAAGAGAAAAAGATGAAGAAATGAGAGAAGAGAAGAAATAAGTTTGAAT
GGGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGAATATATACAGGTTCATTTTGACATTAAG
TAATGGCAAATATAAATATATATAATGCTAAGATGATGTCAATATATATATATAAAGGTTTATTT
GAAGGTTAGCCAGCAACCTCATTACTCACTTTTCGTTTTCCTTTCATCATCTTAACATCAACTAA
CAATTAAGAAATATGAAGAAAAGAGATAAGAGAAGAAATAAGTTTGAATGGGAGAAGAATTAAGT
TTATCTGAGTAAGAGGAGAGGATATATAAAGGTCAATTATGATTCATTATCACCAAAAGATCTAG
AAATCATGTTGAACCTAAAGACACAGATTAGAAACATATAATTAAAATACATCTTTGTTACAAAC
ATGAACTAAAAAAGAATTTTGGATGATTTCCCTCATAAATTTAAACATATTTCTTCGTGGTAGGC
CTCACAATGATGAAGACTAGGTAATATAGACAACTGAAGGCTTTGTAGTAGCCTCTTTACTCACT
TTTA
Found at i:13357264 original size:250 final size:250
Alignment explanation
Indices: 13356822--13357460 Score: 791
Period size: 250 Copynumber: 2.5 Consensus size: 250
13356812 AGTAGCCTCT
* *
13356822 TTACTCACTTTTTCTTTTTCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
1 TTACTCACTTTTCCTTTTCCTTT-ATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
* * * * * * * *
13356887 ATGGGAGAAAAGAAGAAATAAGTTTTATTGGGAGAAGAATTAAGTTTATTTGAGTGAGAGGAGAA
65 ATGGGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAG
** * * ** *
13356952 AATATATACAGGTTTGTTTTTGCATTAAGTAAAGGAAAATGTCAGTATATAAAATTCTAAGATGA
130 AATATATACAGGTTTCATTTTGCATTAAGTAAAGGAAAATATAAAAATATAAAATGCTAAGATGA
* * *
13357017 TGTCAATATATAAAGT-TACATATAAAGGTTTAACAAAAGGTTTGGCATCAA-CTTCA
195 TGTCAATA-ATAAAGTATACATACAAAGGTTTAACAAAACGTTTGGCAGCAACCTT-A
* * * * *
13357073 TTACTCACTTTTCCTATTCCTTTAGTCATCTTAACATAAACTAACTAAGAGAAAAAGATGAAG-A
1 TTACTCACTTTTCCTTTTCCTTTA-TCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
*
13357137 ATGAGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAG
65 ATGGGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAG
* * *
13357202 AATATATACAGG-TTCATTTTGACATTAAGTAATGGCAAATATAAAAATATATAATGCTAAGATG
130 AATATATACAGGTTTCATTTTG-CATTAAGTAAAGGAAAATATAAAAATATAAAATGCTAAGATG
* * ****
13357266 ATGTCAATAATAATGTATATATACAAAGGTTTATTTTAACGTTTGGCAGCAACCTTA
194 ATGTCAATAATAAAGTATACATACAAAGGTTTAACAAAACGTTTGGCAGCAACCTTA
* * * * *
13357323 TTACTCACTTTTCCTTTTCCTCTCATAATATTAACATCAACTAACAAACAGAAAACGATGAAGCA
1 TTACTCACTTTTCCTTTTCCT-TTATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAA
* * * *
13357388 ACGGGAGAAGAGAAGAAATAAGTTTGAATAAGAGAAGAATTAAGCTTACCTAAGTGAGAAGAGAG
65 ATGGGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAG
*
13357453 AACATATA
130 AATATATA
13357461 ATTCTAAGAT
Statistics
Matches: 333, Mismatches: 49, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
249 13 0.04
250 193 0.58
251 127 0.38
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.30
Consensus pattern (250 bp):
TTACTCACTTTTCCTTTTCCTTTATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAA
TGGGAGAAGAGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAAGAGAGA
ATATATACAGGTTTCATTTTGCATTAAGTAAAGGAAAATATAAAAATATAAAATGCTAAGATGAT
GTCAATAATAAAGTATACATACAAAGGTTTAACAAAACGTTTGGCAGCAACCTTA
Found at i:13357541 original size:198 final size:197
Alignment explanation
Indices: 13357282--13357648 Score: 455
Period size: 198 Copynumber: 1.9 Consensus size: 197
13357272 ATAATAATGT
* * * * *
13357282 ATATATACAAAGGTTTATTTTAACGTTTGGCAGCAACCTTATTACTCACTTTTCCTTTTCCTCTC
1 ATATATACAAAGGTTTATTTGAACGTTAGCCAGCAACCTCATTACTCAATTTTCCTTTTCCTCTC
* *
13357347 ATAATATTAACATCAACTAACAAACAGAAAACGATGAAGCAACGGGAGAAGAGAAGAAATAAGTT
66 ATAATATTAACATCAACTAACAAACAGAAAAAGAT-AAGCAACGAGAGAAGAGAAGAAATAAGTT
* *
13357412 TGAATAAGAGAAGAATTAAGCTTACCTAAGTGAGAAGAGAGAACATATAATTCTAAGATGATGTA
130 TGAATAAGAAAAAAATTAAGCTTACCTAAGTGAGAAGAGAGAACATATAATTCTAAGATGATGTA
13357477 CAC
195 CAC
* * ** *
13357480 ATATATATAAAGGTTTATTTGAAGGTTAGCCAGCAACCTCATTACTCAATTTTTGTTTTCCTTTC
1 ATATATACAAAGGTTTATTTGAACGTTAGCCAGCAACCTCATTACTCAATTTTCCTTTTCCTCTC
* * * * ** * * * * *
13357545 ATCATCTTAACATTAACTAACTAATTGAAAAAGATTAGGAATGAGATACGAGAAGAAATAAGTTT
66 ATAATATTAACATCAACTAACAAACAGAAAAAGATAAGCAACGAGAGAAGAGAAGAAATAAGTTT
* * ** *
13357610 GAATAATAAAAAAATTAAGTTTATTTGAGTGAGAAGAGA
131 GAATAAGAAAAAAATTAAGCTTACCTAAGTGAGAAGAGA
13357649 TGATATATAT
Statistics
Matches: 139, Mismatches: 30, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
197 56 0.40
198 83 0.60
ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30
Consensus pattern (197 bp):
ATATATACAAAGGTTTATTTGAACGTTAGCCAGCAACCTCATTACTCAATTTTCCTTTTCCTCTC
ATAATATTAACATCAACTAACAAACAGAAAAAGATAAGCAACGAGAGAAGAGAAGAAATAAGTTT
GAATAAGAAAAAAATTAAGCTTACCTAAGTGAGAAGAGAGAACATATAATTCTAAGATGATGTAC
AC
Found at i:13358443 original size:243 final size:245
Alignment explanation
Indices: 13357886--13358461 Score: 867
Period size: 245 Copynumber: 2.4 Consensus size: 245
13357876 AGCTTCTTCG
* * * * * * *
13357886 CTCACTTTTTCTTTTTCTTTCATCATATTAACATCAACTAACAAAAAGAAAAAGATGAAGAAATG
1 CTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAAAAGATGAAGAAATG
* * * *
13357951 TGAGAAGAGAAGAAATAAGTTTGAATGGGAGAAGAGTTAAGCTTATCTGAGTGAGAATAGAGAAT
66 AGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAAGAGAGAAT
* *
13358016 ATATATAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATTCTAAGATGATGT
131 ATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATTCTAAGATGATGC
13358081 CAATATATATATATATAGGTTTATCTGAAGGTTTGGCAACAACCTCATTA
196 CAATATATATATATATAGGTTTATCTGAAGGTTTGGCAACAACCTCATTA
** *
13358131 CTCACTTTTCCTTTTCGGTTAATCATCTTAAG-ATAAACTAACAAAGAGAAAAAGATGAAGAACT
1 CTCACTTTTCCTTTTCCTTTAATCATCTT-AGCATAAACTAACAAAGAGAAAAAGATGAAGAAAT
* *
13358195 GAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAAATT-AGTTTATCT-AGGTGAGCAGAGAG
65 GAGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAG-AATTAAGCTTATCTGA-GTGAGAAGAGAG
* * *
13358258 TATATATACAGGTTCATTTTTACATTGAGTAATGGCAAATATAAATATATATAATTCTAAGATTA
128 AATATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATTCTAAGATGA
*
13358323 TGCCAATATATATATA-A-AGGTTTATAC-GAAGGTTTGGCTACAACCTCATTA
193 TGCCAATATATATATATATAGGTTTAT-CTGAAGGTTTGGCAACAACCTCATTA
*
13358374 CTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAGCAAAGAGAAAAAGATGAAGAAATG
1 CTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAAAAGATGAAGAAATG
13358439 AGAGAAGAGAAGAAATAAGTTTA
66 AGAGAAGAGAAGAAATAAGTTTA
13358462 TCTAAGTGAG
Statistics
Matches: 300, Mismatches: 26, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
242 2 0.01
243 112 0.37
244 3 0.01
245 179 0.60
246 4 0.01
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (245 bp):
CTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAACAAAGAGAAAAAGATGAAGAAATG
AGAGAAGAGAAGAAATAAGTTTAAATGGGAGAAGAATTAAGCTTATCTGAGTGAGAAGAGAGAAT
ATATACAGGTTCATTTTGACATTGAGTAATGGCAAATATAAATATATATAATTCTAAGATGATGC
CAATATATATATATATAGGTTTATCTGAAGGTTTGGCAACAACCTCATTA
Found at i:13358654 original size:219 final size:221
Alignment explanation
Indices: 13358224--13358679 Score: 657
Period size: 219 Copynumber: 2.1 Consensus size: 221
13358214 GTTTAAATGG
* * * * * * *
13358224 GAGAAGAAATTAGTTTATCTAGGTGAGCAGAGAGTATATATACAGGTTCATTTTTACATTGAGTA
1 GAGAAGAAATAAGTTTATCTAAGTGAGAAGAGAGAATATATACAAGTTCATTGTAACATTGAGTA
*
13358289 ATGGCAAATATAAATATATATAATTCTAAGATTATGCCAATATATATATAAAGGTTTATACGAAG
66 ATGGCAAATATAAATATATATAATTCTAAGATGATGCCAATATATATATAAAGGTTTATACGAAG
* * * * * *
13358354 GTTTGGCTACAACCTCATTACTCACTTTTCCTTTTCCTTTAATCATCTTAGCATAAACTAGCAAA
131 GTTAGCCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAACCATCTTAACATAAACTAACAAA
13358419 GAGAAAAAGATGAAGAAATGAGAGAA
196 GAGAAAAAGATGAAGAAATGAGAGAA
*
13358445 GAGAAGAAATAAGTTTATCTAAGTGAGAAGAGAGAATATATACAAGTTCATTGTAACATTTAGTA
1 GAGAAGAAATAAGTTTATCTAAGTGAGAAGAGAGAATATATACAAGTTCATTGTAACATTGAGTA
*
13358510 ATGGCAAATATAAATATATATAATTCTAAGATGATGTC-A-ATATATATAAAGGTTTAT-CTGAA
66 ATGGCAAATATAAATATATATAATTCTAAGATGATGCCAATATATATATAAAGGTTTATAC-GAA
* * * * *
13358572 GGTTAGCCAAGAACCTCATTACTCACTTTTCGTTTTCCTTTCACCATCTTAACATCAACTAACTA
130 GGTTAGCCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAACCATCTTAACATAAACTAACAA
** *
13358637 ATTGAAAAAGATGAAGAAATGAGATAA
195 AGAGAAAAAGATGAAGAAATGAGAGAA
*
13358664 GAGAAGAAATATGTTT
1 GAGAAGAAATAAGTTT
13358680 GAATGACAGA
Statistics
Matches: 209, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
218 1 0.00
219 114 0.55
220 1 0.00
221 93 0.44
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (221 bp):
GAGAAGAAATAAGTTTATCTAAGTGAGAAGAGAGAATATATACAAGTTCATTGTAACATTGAGTA
ATGGCAAATATAAATATATATAATTCTAAGATGATGCCAATATATATATAAAGGTTTATACGAAG
GTTAGCCAACAACCTCATTACTCACTTTTCCTTTTCCTTTAACCATCTTAACATAAACTAACAAA
GAGAAAAAGATGAAGAAATGAGAGAA
Found at i:13361278 original size:243 final size:243
Alignment explanation
Indices: 13360865--13361423 Score: 929
Period size: 243 Copynumber: 2.3 Consensus size: 243
13360855 TTTGTATCAG
* * * * * *
13360865 CCTCTTTACTAACTTTTTCTTTTACTTTGATCATATTAACATCAACTAACAAAGAGGAAAAGATG
1 CCTCATTACTAACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
* **
13360930 AAGAAATGGGAGAAATGAAGAAATAAGTTTGAATGAGAGAAGAATTAAGTTTATCTAAGTGAGAG
66 AAGAAATGGGAGAAATGAAGAAATAAGTTTGAACGAGAGAAGAATTAAGTTTATCTAAGCAAGAG
*
13360995 GAGAGATTATATACAGGTTTATTTTGGCATTCAGTAATGGTAAATGTCAATATGTATAATGCTAA
131 GAGAGATTATATACAGGTTCATTTTGGCATTCAGTAATGGTAAATGTCAATATGTATAATGCTAA
*
13361060 GATGATGTCAATATATAAATAAAGGTTTATTTGAAGGTTTGGCAGCAA
196 GATGATGTCAATATATAAATAAAGGTTTATTTGAAGGTTTGGCAACAA
* *
13361108 CCTCATTACTGACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATT
1 CCTCATTACTAACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
* *
13361173 AACAAATGGGAGAAATGAAGAAATAAGTTTGAACGAGAGAAGAATTAAGTTTATCTTAGCAAGAG
66 AAGAAATGGGAGAAATGAAGAAATAAGTTTGAACGAGAGAAGAATTAAGTTTATCTAAGCAAGAG
* *
13361238 GAGAGATTATATATAGGTTCATTTTGGCATTCAGTAATGGTAAATGTCAATATTTATAATGCTAA
131 GAGAGATTATATACAGGTTCATTTTGGCATTCAGTAATGGTAAATGTCAATATGTATAATGCTAA
*
13361303 GATGATGTCAATATATAAATAAAGGTTTATTTGAAGGTTTGGGAACAA
196 GATGATGTCAATATATAAATAAAGGTTTATTTGAAGGTTTGGCAACAA
* * *
13361351 CCTCATTACTCACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACGAAGAGAAATAGATG
1 CCTCATTACTAACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
13361416 AAGAAATG
66 AAGAAATG
13361424 AGAAAAGAGA
Statistics
Matches: 293, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
243 293 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (243 bp):
CCTCATTACTAACTTATTCTTTTCCTTTCATCATCTTAACATCAACTAACAAAGAGAAAAAGATG
AAGAAATGGGAGAAATGAAGAAATAAGTTTGAACGAGAGAAGAATTAAGTTTATCTAAGCAAGAG
GAGAGATTATATACAGGTTCATTTTGGCATTCAGTAATGGTAAATGTCAATATGTATAATGCTAA
GATGATGTCAATATATAAATAAAGGTTTATTTGAAGGTTTGGCAACAA
Found at i:13367350 original size:49 final size:49
Alignment explanation
Indices: 13367294--13367414 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
13367284 TAAGCACACG
*
13367294 AACCGTATCTCAAATAAGATTGATTTTTATTATATCAAAACAAACAATA
1 AACCGTATCTCAAATAAGATTCATTTTTATTATATCAAAACAAACAATA
13367343 AACCGTATCTCAAATAAGATTCATTTTTATTATATCAAAACAAACAATA
1 AACCGTATCTCAAATAAGATTCATTTTTATTATATCAAAACAAACAATA
13367392 AACCGTATCTCAAATAAGATTCA
1 AACCGTATCTCAAATAAGATTCA
13367415 CTTATCTGAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.31
Consensus pattern (49 bp):
AACCGTATCTCAAATAAGATTCATTTTTATTATATCAAAACAAACAATA
Found at i:13368950 original size:20 final size:20
Alignment explanation
Indices: 13368921--13369004 Score: 82
Period size: 19 Copynumber: 4.2 Consensus size: 20
13368911 AATCAAGTTA
13368921 AAAATGATTTTAAACAAGTC
1 AAAATGATTTTAAACAAGTC
*
13368941 AAAAT-AATTTAAACCAAGTC
1 AAAATGATTTTAAA-CAAGTC
* **
13368961 AAAATCATTTT-AACACTTC
1 AAAATGATTTTAAACAAGTC
* *
13368980 AACATGTTTTTCAAACAAGTC
1 AAAATGATTTT-AAACAAGTC
13369001 AAAA
1 AAAA
13369005 AAGCTTCAGG
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
19 19 0.38
20 18 0.36
21 13 0.26
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (20 bp):
AAAATGATTTTAAACAAGTC
Found at i:13368953 original size:19 final size:19
Alignment explanation
Indices: 13368929--13368975 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
13368919 TAAAAATGAT
13368929 TTTAAACAAGTCAAAATAA
1 TTTAAACAAGTCAAAATAA
*
13368948 TTTAAACCAAGTCAAAATCA
1 TTTAAA-CAAGTCAAAATAA
*
13368968 TTTTAACA
1 TTTAAACA
13368976 CTTCAACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.30
Consensus pattern (19 bp):
TTTAAACAAGTCAAAATAA
Found at i:13371121 original size:21 final size:21
Alignment explanation
Indices: 13371097--13371137 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13371087 GAATTAAAGG
13371097 AATATACATTTGAAGAATTAC
1 AATATACATTTGAAGAATTAC
* *
13371118 AATATGCATTTGATGAATTA
1 AATATACATTTGAAGAATTA
13371138 ACTATAGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (21 bp):
AATATACATTTGAAGAATTAC
Found at i:13390957 original size:6 final size:6
Alignment explanation
Indices: 13390932--13390976 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
13390922 ACAATTCATA
* * *
13390932 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
13390977 ATTTTGATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (6 bp):
TCACTT
Found at i:13396540 original size:54 final size:54
Alignment explanation
Indices: 13396476--13396583 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
13396466 CCTATGGCAA
13396476 GCCAACTATATCCGACTCAGCCCAACTAGTTAATAGGGATTTTCAATTTACAAT
1 GCCAACTATATCCGACTCAGCCCAACTAGTTAATAGGGATTTTCAATTTACAAT
13396530 GCCAACTATATCCGACTCAGCCCAACTAGTTAATAGGGATTTTCAATTTACAAT
1 GCCAACTATATCCGACTCAGCCCAACTAGTTAATAGGGATTTTCAATTTACAAT
13396584 TCATATCACT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (54 bp):
GCCAACTATATCCGACTCAGCCCAACTAGTTAATAGGGATTTTCAATTTACAAT
Found at i:13396614 original size:6 final size:6
Alignment explanation
Indices: 13396589--13396633 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
13396579 ACAATTCATA
* * *
13396589 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
13396634 ATTTTGATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (6 bp):
TCACTT
Found at i:13400798 original size:22 final size:23
Alignment explanation
Indices: 13400750--13400798 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
13400740 CTTTATTTGA
**
13400750 TAAAGTATTTTGAAATAACAACT
1 TAAAGTATTTTGAAATAACAAAG
* *
13400773 TAAAGTGTTTTTAAAT-ACAAAG
1 TAAAGTATTTTGAAATAACAAAG
13400795 TAAA
1 TAAA
13400799 ATTGACAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (23 bp):
TAAAGTATTTTGAAATAACAAAG
Found at i:13400920 original size:20 final size:20
Alignment explanation
Indices: 13400881--13400981 Score: 100
Period size: 20 Copynumber: 5.0 Consensus size: 20
13400871 GTTTGAAACA
*
13400881 ATTTTAAAATCAAGTTAAAATG
1 ATTTT-AAA-CAAGTCAAAATG
13400903 ATTTTAAACAAGTCAAAAT-
1 ATTTTAAACAAGTCAAAATG
* *
13400922 AATTTAAACCAAGTCAAAATA
1 ATTTTAAA-CAAGTCAAAATG
13400943 ATTTTAATAC-A-TCAAAATG
1 ATTTTAA-ACAAGTCAAAATG
*
13400962 TTTTTCAAACAAGTCAAAAT
1 ATTTT-AAACAAGTCAAAAT
13400982 AGCTCCAGGC
Statistics
Matches: 68, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
19 20 0.29
20 25 0.37
21 17 0.25
22 6 0.09
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.33
Consensus pattern (20 bp):
ATTTTAAACAAGTCAAAATG
Found at i:13403847 original size:19 final size:17
Alignment explanation
Indices: 13403801--13403848 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 17
13403791 AGCATGTCGA
13403801 TGTCCTCACCAAGCCGT
1 TGTCCTCACCAAGCCGT
*
13403818 TGTCCTCACCAAGTCGT
1 TGTCCTCACCAAGCCGT
13403835 TGTCTCGTCACCAA
1 TGTC-C-TCACCAA
13403849 CTCACCATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 20 0.71
18 1 0.04
19 7 0.25
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.27
Consensus pattern (17 bp):
TGTCCTCACCAAGCCGT
Found at i:13404106 original size:7 final size:7
Alignment explanation
Indices: 13404094--13404120 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
13404084 CAGCAAACCT
13404094 TCCCTTC
1 TCCCTTC
13404101 TCCCTTC
1 TCCCTTC
13404108 TCCCTTC
1 TCCCTTC
13404115 TCCCTT
1 TCCCTT
13404121 ACCTTTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (7 bp):
TCCCTTC
Found at i:13409415 original size:6 final size:6
Alignment explanation
Indices: 13409404--13409439 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
13409394 CACTCGGACT
*
13409404 TGAGTG TGAGTG TGAGTG TTAGTG TGAGTG TGAGTG
1 TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG TGAGTG
13409440 CGATGCGGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.00, G:0.47, T:0.36
Consensus pattern (6 bp):
TGAGTG
Found at i:13410400 original size:68 final size:68
Alignment explanation
Indices: 13410286--13410424 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
13410276 ATATAAAACC
*
13410286 AATGCGGAAATAAAGATAAGTGACACAATAATGTCAACTCTATTAAGAGTCCTATTTCCAACACA
1 AATGCGGAAATAAAGATAAGTGACACAATAACGTCAACTCTATTAAGAGTCCTATTTCCAACACA
13410351 TTG
66 TTG
*
13410354 AATGTGGAAATAAAGATAAGTGACACAATAACGTCAACTCTATTAAGAGTCCTATTTCCAACACA
1 AATGCGGAAATAAAGATAAGTGACACAATAACGTCAACTCTATTAAGAGTCCTATTTCCAACACA
13410419 TTG
66 TTG
13410422 AAT
1 AAT
13410425 ACAGCACCAT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (68 bp):
AATGCGGAAATAAAGATAAGTGACACAATAACGTCAACTCTATTAAGAGTCCTATTTCCAACACA
TTG
Found at i:13414821 original size:59 final size:58
Alignment explanation
Indices: 13414743--13414855 Score: 140
Period size: 59 Copynumber: 1.9 Consensus size: 58
13414733 CGTGTTACAT
* * * *
13414743 AAAACTTTACGAATATTGTAACAATTTGTGTAATT-AGGTAATGTTTTGTGTAATTATAC
1 AAAACATTACGAATATTGTAACAATTTCTATAATTGA-GT-ATGTTTTGTATAATTATAC
*
13414802 AAAACATTACG-ATAGTTGTAATAATTTCTATAATTGAGTATGTTTTGTATAATT
1 AAAACATTACGAATA-TTGTAACAATTTCTATAATTGAGTATGTTTTGTATAATT
13414856 CTCAATAGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
58 17 0.36
59 29 0.62
60 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.43
Consensus pattern (58 bp):
AAAACATTACGAATATTGTAACAATTTCTATAATTGAGTATGTTTTGTATAATTATAC
Found at i:13420028 original size:3 final size:3
Alignment explanation
Indices: 13420020--13420064 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
13420010 CTTTGATTTG
13420020 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13420065 GATGATGATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:13420069 original size:3 final size:3
Alignment explanation
Indices: 13420063--13420124 Score: 97
Period size: 3 Copynumber: 20.7 Consensus size: 3
13420053 AATAATAATA
*
13420063 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATA ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
* *
13420111 ATT ATG ATC ATG AT
1 ATG ATG ATG ATG AT
13420125 AATAACAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:13421485 original size:5 final size:5
Alignment explanation
Indices: 13421475--13421507 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
13421465 TTCAGAACTG
13421475 AAATA AAATA AAATA AAATA AAATAA AAATA AA
1 AAATA AAATA AAATA AAATA AAAT-A AAATA AA
13421508 TAGCTTTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:13421652 original size:17 final size:17
Alignment explanation
Indices: 13421626--13421658 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13421616 AACGGTGATG
*
13421626 AGATCGCTTAATATATA
1 AGATCACTTAATATATA
13421643 AGATCACTTAATATAT
1 AGATCACTTAATATAT
13421659 GCTAGTGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (17 bp):
AGATCACTTAATATATA
Found at i:13427805 original size:16 final size:17
Alignment explanation
Indices: 13427784--13427831 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
13427774 TTATCAAAAA
13427784 TTTCTTTCTTTTTCT-T
1 TTTCTTTCTTTTTCTAT
*
13427800 TTTCTTCCTTTTTCTCAT
1 TTTCTTTCTTTTTCT-AT
*
13427818 TTTGTTTCTTTTTC
1 TTTCTTTCTTTTTC
13427832 AAATGACTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 14 0.52
18 13 0.48
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTCTTTCTTTTTCTAT
Found at i:13429702 original size:24 final size:24
Alignment explanation
Indices: 13429639--13429693 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
13429629 ACTCTGTCTG
13429639 GGCTCGTAAGAGCTAATCATTCTA
1 GGCTCGTAAGAGCTAATCATTCTA
*
13429663 GGCTCGTAAGAGCTAATCATTCTG
1 GGCTCGTAAGAGCTAATCATTCTA
13429687 GGCTCGT
1 GGCTCGT
13429694 GCTGGCTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (24 bp):
GGCTCGTAAGAGCTAATCATTCTA
Found at i:13432609 original size:20 final size:20
Alignment explanation
Indices: 13432586--13432625 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
13432576 GTGTTAAAGG
13432586 CATGATGCGACTGTTGATGA
1 CATGATGCGACTGTTGATGA
**
13432606 CATGATGCGGTTGTTGATGA
1 CATGATGCGACTGTTGATGA
13432626 AATGGAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.33
Consensus pattern (20 bp):
CATGATGCGACTGTTGATGA
Found at i:13446416 original size:23 final size:23
Alignment explanation
Indices: 13446366--13446426 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
13446356 TTCAGCCAAA
* * *
13446366 GTTAATAGGTCGGGTTGGGTTTG
1 GTTAACAGGTCGGGTAGGGTTCG
* *
13446389 ATTAACAGGTTGGGTAGGGTTCG
1 GTTAACAGGTCGGGTAGGGTTCG
*
13446412 GTTAACGGGTCGGGT
1 GTTAACAGGTCGGGT
13446427 CGTGTCGTGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.16, C:0.08, G:0.43, T:0.33
Consensus pattern (23 bp):
GTTAACAGGTCGGGTAGGGTTCG
Found at i:13447405 original size:24 final size:24
Alignment explanation
Indices: 13447372--13447419 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
13447362 TCTAAGTTTT
13447372 GTATACGCCATTAGGCATACTATG
1 GTATACGCCATTAGGCATACTATG
* *
13447396 GTATATGCCATTAGGCGTACTATG
1 GTATACGCCATTAGGCATACTATG
13447420 TGATAATGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (24 bp):
GTATACGCCATTAGGCATACTATG
Found at i:13454997 original size:21 final size:21
Alignment explanation
Indices: 13454971--13455060 Score: 128
Period size: 21 Copynumber: 4.3 Consensus size: 21
13454961 TCACTTCGTT
13454971 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
13454992 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
*
13455013 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
* * *
13455034 TCTTTTTGTCTAACTCACTTC
1 TCTTTTTGTCCAAGTTACTTC
13455055 -CTTTTT
1 TCTTTTT
13455061 TCTTTGTGAG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
20 6 0.09
21 58 0.91
ACGTcount: A:0.11, C:0.24, G:0.10, T:0.54
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:13465958 original size:22 final size:22
Alignment explanation
Indices: 13465930--13465987 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
13465920 AAAAAAATAT
13465930 TCAATTAAATTGGCGCAATCAA
1 TCAATTAAATTGGCGCAATCAA
*
13465952 TCAATTAAATTGGTGCAATCAA
1 TCAATTAAATTGGCGCAATCAA
* *
13465974 TCAATCATATTGGC
1 TCAATTAAATTGGC
13465988 ATATTACATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (22 bp):
TCAATTAAATTGGCGCAATCAA
Found at i:13481042 original size:20 final size:20
Alignment explanation
Indices: 13481019--13481057 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13481009 AACCCAACTC
13481019 GAAACCCTGTGACCCGACCT
1 GAAACCCTGTGACCCGACCT
**
13481039 GAAACTGTGTGACCCGACC
1 GAAACCCTGTGACCCGACC
13481058 CGAACCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.36, G:0.23, T:0.15
Consensus pattern (20 bp):
GAAACCCTGTGACCCGACCT
Done.