Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 66 of 144
Found at i:14286892 original size:17 final size:17
Alignment explanation
Indices: 14286870--14286913 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
14286860 CATTTTTGAG
14286870 TTTAAAATTACTCTAAA
1 TTTAAAATTACTCTAAA
* * *
14286887 TTTAAATTTATTTTAAA
1 TTTAAAATTACTCTAAA
*
14286904 TTAAAAATTA
1 TTTAAAATTA
14286914 ATATTAAAAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTAAAATTACTCTAAA
Found at i:14287691 original size:16 final size:15
Alignment explanation
Indices: 14287666--14287695 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14287656 ATGCTATTAC
14287666 TAAAAATATTAATAT
1 TAAAAATATTAATAT
14287681 TAAATAATATTAATA
1 TAAA-AATATTAATA
14287696 AAAAAATCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAAAAATATTAATAT
Found at i:14288937 original size:29 final size:29
Alignment explanation
Indices: 14288771--14289082 Score: 216
Period size: 30 Copynumber: 10.7 Consensus size: 29
14288761 ATATTTAGAC
* * *
14288771 CCCTAAACCTTCCAAAAATTGCATTTTAA
1 CCCTAAACTTTCTAAAAATTACATTTTAA
**
14288800 CCCCTAAACTTAATAAAAATTACATTTTAA
1 -CCCTAAACTTTCTAAAAATTACATTTTAA
14288830 CCCTAAAC-TTCTAAAAATTACATTTTAA
1 CCCTAAACTTTCTAAAAATTACATTTTAA
*
14288858 CCCTAAACTTTCTAAAAATTACATTTTTAC
1 CCCTAAACTTTCTAAAAATTACA-TTTTAA
* * *
14288888 CCCCAAACTTTATAAAAATTACATTTTTTA
1 CCCTAAACTTTCTAAAAATTACA-TTTTAA
* * * *
14288918 CCCTCGAAC-TTC-AACAATTATATTTTTA
1 CCCT-AAACTTTCTAAAAATTACATTTTAA
* * *
14288946 -CCTCAAA-TTTCCAAAAAATCCATTTGTAA
1 CCCT-AAACTTTCTAAAAATTACATTT-TAA
14288975 CCCTAAA-TTCTCTAAAAATTACCATTTT-A
1 CCCTAAACTT-TCTAAAAATTA-CATTTTAA
* * *
14289004 CCCTCGAAC-TTC-ACAAAATTTCCATTTTTGA
1 CCCT-AAACTTTCTA-AAAA-TTACA-TTTTAA
**
14289035 CCCCGAAC-TTCTAAAAATTACCATTTT-A
1 CCCTAAACTTTCTAAAAATTA-CATTTTAA
*
14289063 CCCTCAAA-TTTCCAAAAATT
1 CCCT-AAACTTTCTAAAAATT
14289083 CCTTTTTTGA
Statistics
Matches: 230, Mismatches: 33, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
27 9 0.04
28 46 0.20
29 68 0.30
30 94 0.41
31 13 0.06
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.35
Consensus pattern (29 bp):
CCCTAAACTTTCTAAAAATTACATTTTAA
Found at i:14288945 original size:117 final size:117
Alignment explanation
Indices: 14288769--14289153 Score: 308
Period size: 117 Copynumber: 3.3 Consensus size: 117
14288759 TCATATTTAG
* * * * * * *
14288769 ACCCCTAAACCTTC-CAAAAATTGCA-TTTTAACCCCTAAACTTAATAAAAATTACATTTTAACC
1 ACCCCCAAA-CTTCACAAAAATTACATTTTTGACCCC-GAACTT-CTAAAAATTATATTTTTACC
* *
14288832 -CTAAACTTCTAAAAATTACATTT-TAACCCTAAACTT-TCTAAAAATTA-CATTTTT
63 TC-AAACTTCCAAAAAATACATTTGTAACCCTAAA-TTCTCTAAAAATTACCA-TTTT
* * * *
14288886 ACCCCCAAACTTTATAAAAATTACATTTTTTACCCTCGAACTTC-AACAATTATATTTTTACCTC
1 ACCCCCAAACTTCACAAAAATTACATTTTTGACCC-CGAACTTCTAAAAATTATATTTTTACCTC
* *
14288950 AAATTTCCAAAAAATCCATTTGTAACCCTAAATTCTCTAAAAATTACCATTTT
65 AAACTTCCAAAAAATACATTTGTAACCCTAAATTCTCTAAAAATTACCATTTT
* * * * *
14289003 ACCCTCGAACTTCACAAAATTTCCATTTTTGACCCCGAACTTCTAAAAATTACCA-TTTTACCCT
1 ACCCCCAAACTTCACAAAAATTACATTTTTGACCCCGAACTTCTAAAAATTA-TATTTTTA-CCT
* * * * * * *
14289067 CAAATTTCCAAAAATTCCTTTTTTGACCTCGAACATTC-C-AAAAATTACCATTTT
64 CAAACTTCCAAAAAATACATTTGTAACC-CTAA-ATTCTCTAAAAATTACCATTTT
* * *
14289121 ATCCCCAAA-TATC-CAAAAATTCCACTTTTGACC
1 ACCCCCAAACT-TCACAAAAATTACATTTTTGACC
14289154 TCAAAGCTCC
Statistics
Matches: 222, Mismatches: 33, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
116 45 0.20
117 102 0.46
118 66 0.30
119 5 0.02
120 4 0.02
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (117 bp):
ACCCCCAAACTTCACAAAAATTACATTTTTGACCCCGAACTTCTAAAAATTATATTTTTACCTCA
AACTTCCAAAAAATACATTTGTAACCCTAAATTCTCTAAAAATTACCATTTT
Found at i:14289053 original size:59 final size:58
Alignment explanation
Indices: 14288771--14289183 Score: 310
Period size: 59 Copynumber: 7.1 Consensus size: 58
14288761 ATATTTAGAC
* * *
14288771 CCCT-AAACCTTCCAAAAATTGCA-TTTTAACCCCTAAACTTAATAAAAATTA-CATTTTAA
1 CCCTCAAA-CTTCCAAAAATTCCATTTTTGACCCC-AAACTT-CTAAAAATTACCATTTT-A
* * * *
14288830 CCCT-AAACTTCTAAAAATTACA-TTTTAACCCTAAACTTTCTAAAAATTA-CATTTTTA
1 CCCTCAAACTTCCAAAAATTCCATTTTTGACCCCAAAC-TTCTAAAAATTACCA-TTTTA
* ** * * * * *
14288887 CCCCCAAACTTTATAAAAATTACATTTTTTACCCTCGAACTTC-AACAATTA-TATTTTTA
1 CCCTCAAAC-TTCCAAAAATTCCATTTTTGACCC-CAAACTTCTAAAAATTACCA-TTTTA
* * * * * *
14288946 -CCTCAAATTTCCAAAAAATCCATTTGTAACCCTAAATTCTCTAAAAATTACCATTTTA
1 CCCTCAAACTTCCAAAAATTCCATTTTTGACCCCAAACT-TCTAAAAATTACCATTTTA
* * *
14289004 CCCTCGAACTTCACAAAATTTCCATTTTTGACCCCGAACTTCTAAAAATTACCATTTTA
1 CCCTCAAACTTC-CAAAAATTCCATTTTTGACCCCAAACTTCTAAAAATTACCATTTTA
* * * * *
14289063 CCCTCAAATTTCCAAAAATTCCTTTTTTGACCTCGAACATTCCAAAAATTACCATTTTA
1 CCCTCAAACTTCCAAAAATTCCATTTTTGACCCCAAAC-TTCTAAAAATTACCATTTTA
* * * *
14289122 TCCC-CAAA-TATCCAAAAATTCCACTTTTGACCTCAAAGC-TCCAAAAATTACCATTTTG
1 -CCCTCAAACT-TCCAAAAATTCCATTTTTGACCCCAAA-CTTCTAAAAATTACCATTTTA
14289180 CCCT
1 CCCT
14289184 TGAGTGTTCA
Statistics
Matches: 295, Mismatches: 43, Indels: 33
0.80 0.12 0.09
Matches are distributed among these distances:
56 3 0.01
57 42 0.14
58 92 0.31
59 120 0.41
60 35 0.12
61 3 0.01
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.35
Consensus pattern (58 bp):
CCCTCAAACTTCCAAAAATTCCATTTTTGACCCCAAACTTCTAAAAATTACCATTTTA
Found at i:14289178 original size:29 final size:29
Alignment explanation
Indices: 14288814--14289183 Score: 168
Period size: 29 Copynumber: 12.7 Consensus size: 29
14288804 TAAACTTAAT
* *
14288814 AAAAATTA-CATTTTAACCCT-AAACTTCT
1 AAAAATTACCATTTTGACCCTCAAAC-TCC
* *
14288842 AAAAATTA-CATTTTAACCCT-AAACTTTCT
1 AAAAATTACCATTTTGACCCTCAAAC--TCC
* * **
14288871 AAAAATTA-CATTTTTACCCCCAAACTTTAT
1 AAAAATTACCATTTTGACCCTCAAAC--TCC
* * *
14288901 AAAAATTA-CATTTTTTACCCTCGAACTTC
1 AAAAATTACCA-TTTTGACCCTCAAACTCC
* * * *
14288930 AACAATTA-TATTTTTA-CCTCAAATTTCC
1 AAAAATTACCATTTTGACCCTCAAA-CTCC
* * *
14288958 AAAAAAT-CCATTTGTAACCCT-AAATTCTCT
1 AAAAATTACCATTT-TGACCCTCAAA--CTCC
* *
14288988 AAAAATTACCATTTT-ACCCTCGAACTTC
1 AAAAATTACCATTTTGACCCTCAAACTCC
* * *
14289016 ACAAAATTTCCATTTTTGACCC-CGAACTTCT
1 A-AAAATTACCA-TTTTGACCCTCAAAC-TCC
*
14289047 AAAAATTACCATTTT-ACCCTCAAATTTCC
1 AAAAATTACCATTTTGACCCTCAAA-CTCC
* *
14289076 AAAAATT-CCTTTTTTGA-CCTCGAACATTCC
1 AAAAATTACC-ATTTTGACCCTC-AA-ACTCC
*
14289106 AAAAATTACCATTTT-ATCCC-CAAATATCC
1 AAAAATTACCATTTTGA-CCCTCAAA-CTCC
14289135 AAAAATT-CCACTTTTGA-CCTCAAAGCTCC
1 AAAAATTACCA-TTTTGACCCTCAAA-CTCC
14289164 AAAAATTACCATTTTG-CCCT
1 AAAAATTACCATTTTGACCCT
14289184 TGAGTGTTCA
Statistics
Matches: 279, Mismatches: 34, Indels: 57
0.75 0.09 0.15
Matches are distributed among these distances:
27 6 0.02
28 56 0.20
29 113 0.41
30 74 0.27
31 30 0.11
ACGTcount: A:0.37, C:0.25, G:0.03, T:0.35
Consensus pattern (29 bp):
AAAAATTACCATTTTGACCCTCAAACTCC
Found at i:14293605 original size:13 final size:12
Alignment explanation
Indices: 14293582--14293622 Score: 57
Period size: 13 Copynumber: 3.4 Consensus size: 12
14293572 CATCTTAGTC
14293582 ATTTT-TCTTTT
1 ATTTTCTCTTTT
*
14293593 ATTTTCTATTTTT
1 ATTTTCT-CTTTT
14293606 ATTTTCTCTTTT
1 ATTTTCTCTTTT
14293618 ATTTT
1 ATTTT
14293623 ATGCTCTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 5 0.19
12 10 0.38
13 11 0.42
ACGTcount: A:0.12, C:0.10, G:0.00, T:0.78
Consensus pattern (12 bp):
ATTTTCTCTTTT
Found at i:14295248 original size:71 final size:71
Alignment explanation
Indices: 14295158--14295313 Score: 186
Period size: 71 Copynumber: 2.2 Consensus size: 71
14295148 GTACTACCAG
* * * * * * * *
14295158 AACAACTCAAGTTAGTAGCCCAGGTCTCTCATCCCTTATACATCTACCGATACACTATTGAGTTG
1 AACAACTCAAGTCAATAGCCAAGGTCCCTCAACCCCTATACATCTACCAATACACTATTGAGTTA
14295223 TTTCGA
66 TTTCGA
* * * ** *
14295229 AACAACTCAAGTCAATAGCCAAGGTCCCTTAACCCCTGTACTTCTACCAATACTTTGTTGAGTTA
1 AACAACTCAAGTCAATAGCCAAGGTCCCTCAACCCCTATACATCTACCAATACACTATTGAGTTA
14295294 TTTCGA
66 TTTCGA
14295300 AACAACTCAAGTCA
1 AACAACTCAAGTCA
14295314 GTATTGAAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (71 bp):
AACAACTCAAGTCAATAGCCAAGGTCCCTCAACCCCTATACATCTACCAATACACTATTGAGTTA
TTTCGA
Found at i:14295932 original size:24 final size:24
Alignment explanation
Indices: 14295880--14296056 Score: 201
Period size: 24 Copynumber: 7.4 Consensus size: 24
14295870 GCTAATGTAT
* * *
14295880 GTTTATGCTTGTCAGCCACTATAC
1 GTTTATGCTCGTCAGCCACTTTAG
*
14295904 ATTTATGCTCGTCAGCCACTTTAG
1 GTTTATGCTCGTCAGCCACTTTAG
* * * *
14295928 GTTTATGCTCGCCAACCTCTTTAT
1 GTTTATGCTCGTCAGCCACTTTAG
*
14295952 GTTTATGCTCGTCGGCCACTTTAG
1 GTTTATGCTCGTCAGCCACTTTAG
* *
14295976 GCTTATGCTCGCCAGCCACTTTAG
1 GTTTATGCTCGTCAGCCACTTTAG
* * *
14296000 GCTTATGCTCGTTAGCCACTTTAC
1 GTTTATGCTCGTCAGCCACTTTAG
* * *
14296024 ATTTATGCTCGTTAGCCACTTTAT
1 GTTTATGCTCGTCAGCCACTTTAG
14296048 GTTTATGCT
1 GTTTATGCT
14296057 TACGAATTAA
Statistics
Matches: 129, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 129 1.00
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.39
Consensus pattern (24 bp):
GTTTATGCTCGTCAGCCACTTTAG
Found at i:14302069 original size:43 final size:43
Alignment explanation
Indices: 14302022--14302115 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
14302012 AACAACCTAA
* *
14302022 AGTTCTACCAGTACTTAAGATAGCTTCTACTGATACTAATAAG
1 AGTTCTACCAGTACTTAAGATAGCTTCTACCGATACCAATAAG
* *
14302065 AGTTCTACCGGTACTTAAGATAGCTTTTACCGATACCAATAAG
1 AGTTCTACCAGTACTTAAGATAGCTTCTACCGATACCAATAAG
*
14302108 ACTTCTAC
1 AGTTCTAC
14302116 TGAAACTTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (43 bp):
AGTTCTACCAGTACTTAAGATAGCTTCTACCGATACCAATAAG
Found at i:14302096 original size:22 final size:22
Alignment explanation
Indices: 14302024--14302096 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
14302014 CAACCTAAAG
*
14302024 TTCTACCAGTACTTAAGATAGC
1 TTCTACCGGTACTTAAGATAGC
* *
14302046 TTCTACTGATACTAATAAG--AG-
1 TTCTACCGGTACT--TAAGATAGC
14302067 TTCTACCGGTACTTAAGATAGC
1 TTCTACCGGTACTTAAGATAGC
*
14302089 TTTTACCG
1 TTCTACCG
14302097 ATACCAATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
19 4 0.10
21 13 0.32
22 19 0.47
24 4 0.10
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (22 bp):
TTCTACCGGTACTTAAGATAGC
Found at i:14302270 original size:71 final size:71
Alignment explanation
Indices: 14302180--14302337 Score: 185
Period size: 71 Copynumber: 2.2 Consensus size: 71
14302170 TTGTACTATT
* *
14302180 GGAACAACTCAAGTCAATAGGCCAAG-TCTC-TCATCCCTTATACATCTACCGATACACTGTTGA
1 GGAACAACTCAAGTCAATA-GCCAAGATC-CGTCATCCCCTATACATCTACCGATACACTGTTAA
14302243 GTTATTCC
64 GTTATTCC
* * * **
14302251 GGAACAACTCAAGTCAATAGCCAAGATCCGTTATCCCCTATACTTCTACTGATACTTTGTTAAGT
1 GGAACAACTCAAGTCAATAGCCAAGATCCGTCATCCCCTATACATCTACCGATACACTGTTAAGT
* **
14302316 TGTTTT
66 TATTCC
*
14302322 GAAACAACTCAAGTCA
1 GGAACAACTCAAGTCA
14302338 GTATTGAAAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
70 7 0.09
71 67 0.91
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (71 bp):
GGAACAACTCAAGTCAATAGCCAAGATCCGTCATCCCCTATACATCTACCGATACACTGTTAAGT
TATTCC
Found at i:14302924 original size:24 final size:24
Alignment explanation
Indices: 14302897--14303076 Score: 157
Period size: 24 Copynumber: 7.5 Consensus size: 24
14302887 TCAGCTAGTG
* *
14302897 TACGTTTATGCTCGTCAATCACTA
1 TACGTTTATGCTCATCAACCACTA
* *
14302921 TACGTTTATGCTCATCAGCAAC-A
1 TACGTTTATGCTCATCAACCACTA
* * *
14302944 TTACGTTTATGCTCGTCAGCCACTT
1 -TACGTTTATGCTCATCAACCACTA
* * *
14302969 TATGTTTATGCTCA-CTAGCCACTT
1 TACGTTTATGCTCATC-AACCACTA
* *
14302993 TACGTTTATGCTTATCAAACACTA
1 TACGTTTATGCTCATCAACCACTA
* * * *
14303017 TACGTTTTTGCTCGTCAGCCAATA
1 TACGTTTATGCTCATCAACCACTA
* *
14303041 TACGTTTTTGCTCATCAACCACTT
1 TACGTTTATGCTCATCAACCACTA
*
14303065 TATGTTTATGCT
1 TACGTTTATGCT
14303077 TACGAATTAA
Statistics
Matches: 126, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
23 2 0.02
24 123 0.98
25 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.39
Consensus pattern (24 bp):
TACGTTTATGCTCATCAACCACTA
Found at i:14302949 original size:48 final size:48
Alignment explanation
Indices: 14302897--14303076 Score: 193
Period size: 48 Copynumber: 3.8 Consensus size: 48
14302887 TCAGCTAGTG
* * *
14302897 TACGTTTATGCTCGTCAATCACTATACGTTTATGCTCATCAGCAACAT
1 TACGTTTATGCTCATCAACCACTATACGTTTATGCTCATCAGCCACAT
* * * * *
14302945 TACGTTTATGCTCGTCAGCCACTTTATGTTTATGCTCA-CTAGCCACTT
1 TACGTTTATGCTCATCAACCACTATACGTTTATGCTCATC-AGCCACAT
* * * *
14302993 TACGTTTATGCTTATCAAACACTATACGTTTTTGCTCGTCAGCCA-AT
1 TACGTTTATGCTCATCAACCACTATACGTTTATGCTCATCAGCCACAT
* * *
14303040 ATACGTTTTTGCTCATCAACCACTTTATGTTTATGCT
1 -TACGTTTATGCTCATCAACCACTATACGTTTATGCT
14303077 TACGAATTAA
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
47 2 0.02
48 105 0.97
49 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.13, T:0.39
Consensus pattern (48 bp):
TACGTTTATGCTCATCAACCACTATACGTTTATGCTCATCAGCCACAT
Found at i:14303077 original size:72 final size:71
Alignment explanation
Indices: 14302897--14303078 Score: 215
Period size: 72 Copynumber: 2.5 Consensus size: 71
14302887 TCAGCTAGTG
* * * *
14302897 TACGTTTATGCTCGTCAATCACTATACGTTTATGCTCATCAGCAACATTACGTTTATGCTCGTCA
1 TACGTTTATGCTCATCAACCACTTTACGTTTATGCTTATCA-CAACATTACGTTTATGCTCGTCA
* *
14302962 GCCACTT
65 GCCAATA
* * *
14302969 TATGTTTATGCTCA-CTAGCCACTTTACGTTTATGCTTATCA-AACACTATACGTTTTTGCTCGT
1 TACGTTTATGCTCATC-AACCACTTTACGTTTATGCTTATCACAACA-T-TACGTTTATGCTCGT
14303032 CAGCCAATA
63 CAGCCAATA
* *
14303041 TACGTTTTTGCTCATCAACCACTTTATGTTTATGCTTA
1 TACGTTTATGCTCATCAACCACTTTACGTTTATGCTTA
14303079 CGAATTAACA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
70 4 0.04
71 2 0.02
72 86 0.92
73 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.40
Consensus pattern (71 bp):
TACGTTTATGCTCATCAACCACTTTACGTTTATGCTTATCACAACATTACGTTTATGCTCGTCAG
CCAATA
Found at i:14310888 original size:12 final size:11
Alignment explanation
Indices: 14310871--14310917 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
14310861 ATCATTAATA
14310871 AATAAACGAGTC
1 AATAAACGAG-C
14310883 AATAAACGAGC
1 AATAAACGAGC
*
14310894 TTATAAACGAGCC
1 -AATAAACGAG-C
14310907 AATAAACGAGC
1 AATAAACGAGC
14310918 TTGTTGGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 2 0.06
12 28 0.90
13 1 0.03
ACGTcount: A:0.49, C:0.19, G:0.17, T:0.15
Consensus pattern (11 bp):
AATAAACGAGC
Found at i:14310899 original size:24 final size:24
Alignment explanation
Indices: 14310872--14310919 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14310862 TCATTAATAA
*
14310872 ATAAACGAGTCAATAAACGAGCTT
1 ATAAACGAGCCAATAAACGAGCTT
14310896 ATAAACGAGCCAATAAACGAGCTT
1 ATAAACGAGCCAATAAACGAGCTT
14310920 GTTGGTGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.46, C:0.19, G:0.17, T:0.19
Consensus pattern (24 bp):
ATAAACGAGCCAATAAACGAGCTT
Found at i:14322524 original size:13 final size:13
Alignment explanation
Indices: 14322506--14322532 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14322496 CTTTTTTTTA
14322506 ATTTTTAATTAAT
1 ATTTTTAATTAAT
14322519 ATTTTTAATTAAT
1 ATTTTTAATTAAT
14322532 A
1 A
14322533 AATATATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTTAATTAAT
Found at i:14322848 original size:14 final size:14
Alignment explanation
Indices: 14322824--14322859 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
14322814 AAATACATAT
14322824 AATTAATATATAAAA
1 AATT-ATATATAAAA
14322839 AATTATATATAAAA
1 AATTATATATAAAA
14322853 AA-TATAT
1 AATTATAT
14322860 CAAACAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.24
14 12 0.57
15 4 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATTATATATAAAA
Found at i:14324912 original size:27 final size:27
Alignment explanation
Indices: 14324882--14325008 Score: 85
Period size: 27 Copynumber: 4.5 Consensus size: 27
14324872 TTTGAGAGGT
14324882 TCGCCATAAAGGCTTCCTTTCAAAGAC
1 TCGCCATAAAGGCTTCCTTTCAAAGAC
* * *
14324909 TCGCCACAAAGGCATCCTTT-AACAGAAA
1 TCGCCATAAAGGCTTCCTTTCAA-AG-AC
** * **
14324937 TAACCATAAAGGCTTCCTTTCTTTTGAGAGGT
1 TCGCCATAAAGGCTTCCTTTC-----AAAGAC
*
14324969 TAGCCATAAAGGCTTCCTTTCAAAGAC
1 TCGCCATAAAGGCTTCCTTTCAAAGAC
* *
14324996 TCTCCACAAAGGC
1 TCGCCATAAAGGC
14325009 GTCTTTTAAC
Statistics
Matches: 75, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
26 2 0.03
27 33 0.44
28 17 0.23
32 20 0.27
33 2 0.03
34 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (27 bp):
TCGCCATAAAGGCTTCCTTTCAAAGAC
Found at i:14324964 original size:87 final size:87
Alignment explanation
Indices: 14324818--14325070 Score: 384
Period size: 87 Copynumber: 2.9 Consensus size: 87
14324808 TTCATTTTAT
*
14324818 AGACTCGCCACAAACG-ATTCCTTTAACA-AAGATAGCCACAAAGGCTTCCTTTCTTTTGAGAGG
1 AGACTCGCCACAAAGGCA-TCCTTTAACAGAA-ATAGCCACAAAGGCTTCCTTTCTTTTGAGAGG
14324881 TTCGCCATAAAGGCTTCCTTTCAA
64 TTCGCCATAAAGGCTTCCTTTCAA
* *
14324905 AGACTCGCCACAAAGGCATCCTTTAACAGAAATAACCATAAAGGCTTCCTTTCTTTTGAGAGGTT
1 AGACTCGCCACAAAGGCATCCTTTAACAGAAATAGCCACAAAGGCTTCCTTTCTTTTGAGAGGTT
*
14324970 AGCCATAAAGGCTTCCTTTCAA
66 CGCCATAAAGGCTTCCTTTCAA
* * * *
14324992 AGACTCTCCACAAAGGCGTCTTTTAACAGAAATAGCCACAAAGGCTTCTTTTCTTTTGAGAGGTT
1 AGACTCGCCACAAAGGCATCCTTTAACAGAAATAGCCACAAAGGCTTCCTTTCTTTTGAGAGGTT
* *
14325057 CCCCACAAAGGCTT
66 CGCCATAAAGGCTT
14325071 ACATTTCTTG
Statistics
Matches: 151, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
87 148 0.98
88 3 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (87 bp):
AGACTCGCCACAAAGGCATCCTTTAACAGAAATAGCCACAAAGGCTTCCTTTCTTTTGAGAGGTT
CGCCATAAAGGCTTCCTTTCAA
Found at i:14338754 original size:11 final size:11
Alignment explanation
Indices: 14338740--14338777 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
14338730 TTTTTAATTA
14338740 ATTAATTCATG
1 ATTAATTCATG
14338751 ATTAATTCATG
1 ATTAATTCATG
*
14338762 ATTTATT--TG
1 ATTAATTCATG
14338771 ATTAATT
1 ATTAATT
14338778 TATTTTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (11 bp):
ATTAATTCATG
Found at i:14341497 original size:43 final size:43
Alignment explanation
Indices: 14341431--14341520 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
14341421 GAAATTTGTT
* **
14341431 TTAGAAAATTATTGTCTTCCCTCTAGTTTGTACTATGCATATA
1 TTAGAAAATAATAATCTTCCCTCTAGTTTGTACTATGCATATA
* * *
14341474 TTAGAAAATAATAATCTTTCCTCTAGTTTGTTCTATGTATATA
1 TTAGAAAATAATAATCTTCCCTCTAGTTTGTACTATGCATATA
14341517 TTAG
1 TTAG
14341521 TATGGTTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (43 bp):
TTAGAAAATAATAATCTTCCCTCTAGTTTGTACTATGCATATA
Found at i:14343326 original size:21 final size:22
Alignment explanation
Indices: 14343289--14343329 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14343279 AAATCGGAAG
14343289 AAAACAACAAGAAAATAGCATT
1 AAAACAACAAGAAAATAGCATT
*
14343311 AAAATAACAA-AAAATAGCA
1 AAAACAACAAGAAAATAGCA
14343330 ATTTTTTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.68, C:0.12, G:0.07, T:0.12
Consensus pattern (22 bp):
AAAACAACAAGAAAATAGCATT
Found at i:14353906 original size:15 final size:16
Alignment explanation
Indices: 14353872--14353912 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
14353862 TTATTTTAGC
14353872 ATTTAATTT-TTACTTT
1 ATTTAATTTATTAC-TT
14353888 ATTTAATTTATTA-TT
1 ATTTAATTTATTACTT
14353903 ATTT-ATTTAT
1 ATTTAATTTAT
14353913 GTGTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.25
15 6 0.25
16 9 0.38
17 3 0.12
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTAATTTATTACTT
Found at i:14353920 original size:54 final size:61
Alignment explanation
Indices: 14353835--14353972 Score: 159
Period size: 56 Copynumber: 2.4 Consensus size: 61
14353825 TTAATCCCGA
*
14353835 TAATTT-TTATTATTTATATTTATTTGTTTATTTTA-GC-ATTT-AA-TTTTTAC-TTTATT
1 TAATTTATTATTA-TTATATTTATGTGTTTATTTTAGGCTATTTAAACTTTTTACGTTTATT
*
14353891 TAATTTATTATTATT-TATTTATGTG-TTATTTTAGGCTATTTAAACTTTTTGCGTTTATT
1 TAATTTATTATTATTATATTTATGTGTTTATTTTAGGCTATTTAAACTTTTTACGTTTATT
*
14353950 TAATTTTATTGA-TATTCTATTTA
1 TAA-TTTATT-ATTATTATATTTA
14353973 GTTGCATATC
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
54 8 0.11
55 11 0.15
56 12 0.17
57 8 0.11
58 6 0.08
59 9 0.13
60 10 0.14
61 7 0.10
ACGTcount: A:0.25, C:0.04, G:0.07, T:0.64
Consensus pattern (61 bp):
TAATTTATTATTATTATATTTATGTGTTTATTTTAGGCTATTTAAACTTTTTACGTTTATT
Found at i:14362912 original size:16 final size:17
Alignment explanation
Indices: 14362872--14362909 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
14362862 TGCATGTATT
14362872 TTTTTATTGTCGTTGCA
1 TTTTTATTGTCGTTGCA
14362889 TTTTTATTGTC-TCTGCA
1 TTTTTATTGTCGT-TGCA
14362906 TTTT
1 TTTT
14362910 ATTTGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.11, C:0.13, G:0.13, T:0.63
Consensus pattern (17 bp):
TTTTTATTGTCGTTGCA
Found at i:14377620 original size:3 final size:3
Alignment explanation
Indices: 14377612--14377654 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
14377602 TCAGCAAAGG
14377612 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G
14377655 GGAGAAAAAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14382316 original size:13 final size:13
Alignment explanation
Indices: 14382298--14382349 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
14382288 GTATTGAGGC
14382298 AGAAAAAAAAGAA
1 AGAAAAAAAAGAA
*
14382311 AG-AAAAGAAGAA
1 AGAAAAAAAAGAA
*
14382323 GAGAAATAAAAGAA
1 -AGAAAAAAAAGAA
* *
14382337 GGAAGAAAAAGAA
1 AGAAAAAAAAGAA
14382350 GAAGATGTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
12 9 0.29
13 14 0.45
14 8 0.26
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (13 bp):
AGAAAAAAAAGAA
Found at i:14382784 original size:16 final size:17
Alignment explanation
Indices: 14382744--14382781 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
14382734 TGCATGTATT
14382744 TTTTTATTGTCATTGCA
1 TTTTTATTGTCATTGCA
14382761 TTTTTATTGTC-TATGCA
1 TTTTTATTGTCAT-TGCA
14382778 TTTT
1 TTTT
14382782 ATTTGTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTTTATTGTCATTGCA
Found at i:14387691 original size:93 final size:93
Alignment explanation
Indices: 14387532--14387718 Score: 340
Period size: 93 Copynumber: 2.0 Consensus size: 93
14387522 CAAGGTCAAA
*
14387532 GAGGAAGCTTTGAGCAGGAAAGAAATACTTGAAAAGGTGGAGAAATGGTTGACAGCATGTGATGA
1 GAGGAAGCTTTGAGCAGGAAAGAAACACTTGAAAAGGTGGAGAAATGGTTGACAGCATGTGATGA
14387597 GGAGTGCTT-GCTTGAGGAATATAACAGG
66 GGAGTG-TTGGCTTGAGGAATATAACAGG
*
14387625 GAGGAAGCTTTTAGCAGGAAAGAAACACTTGAAAAGGTGGAGAAATGGTTGACAGCATGTGATGA
1 GAGGAAGCTTTGAGCAGGAAAGAAACACTTGAAAAGGTGGAGAAATGGTTGACAGCATGTGATGA
14387690 GGAGTGTTGGCTTGAGGAATATAACAGG
66 GGAGTGTTGGCTTGAGGAATATAACAGG
14387718 G
1 G
14387719 TGAGTGTTTT
Statistics
Matches: 91, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
92 2 0.02
93 89 0.98
ACGTcount: A:0.35, C:0.09, G:0.35, T:0.21
Consensus pattern (93 bp):
GAGGAAGCTTTGAGCAGGAAAGAAACACTTGAAAAGGTGGAGAAATGGTTGACAGCATGTGATGA
GGAGTGTTGGCTTGAGGAATATAACAGG
Found at i:14393880 original size:48 final size:48
Alignment explanation
Indices: 14393804--14393927 Score: 194
Period size: 48 Copynumber: 2.6 Consensus size: 48
14393794 TATTTATGCT
* *
14393804 TCATTAAGTGTTTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
1 TCATTAAATG-TTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
*
14393853 TCATTAAATGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATCTGCA
1 TCATTAAATGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
* *
14393901 TTATTAATTGTTTTGTTTGTTAAATGC
1 TCATTAAATGTTTTGTTTGTTAAATGC
14393928 CTTGCATTAA
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 61 0.87
49 9 0.13
ACGTcount: A:0.24, C:0.09, G:0.14, T:0.53
Consensus pattern (48 bp):
TCATTAAATGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATCTGCA
Found at i:14395289 original size:62 final size:62
Alignment explanation
Indices: 14395192--14395442 Score: 394
Period size: 62 Copynumber: 4.0 Consensus size: 62
14395182 ACTATTAATT
* * *
14395192 AAAAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
14395254 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14395316 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * * *
14395378 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
14395440 AAA
1 AAA
14395443 CTTTTATGAT
Statistics
Matches: 174, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 174 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14395751 original size:402 final size:401
Alignment explanation
Indices: 14394977--14395782 Score: 1181
Period size: 402 Copynumber: 2.0 Consensus size: 401
14394967 TCTTTAAATT
* * *
14394977 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTCTATCTCCTTGGTTCTTGGATGAACTCTCGAACTTGTCAAAC
*
14395042 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGAAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGAAA
* * *
14395107 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTAGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTAGGCCAAAATAGTTTGTCATTTTGCAAA
* * * *
14395172 CAAGTTTTGGACTATTAATTAAAAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTCGGACTATGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGAC
*
14395237 GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
261 GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCATGGACGAA
* *
14395302 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCG-ACGAACA
326 CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTT-GAACGAACA
14395366 TCCGAA-CTAGTC
390 TCCGAACCTA-TC
*
14395378 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTCTATCTC-CTTGGTTCTTGGATGAAC-TCTCGAACTTGTCAA
* * * * * *
14395442 ACTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCGAGATGATCCATT-CTTTCGAG
64 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTT-GAG
** * * * * * * * *
14395506 CTATTTTTCAAACATTCCATGCTTGGGAAATCGCATAATTTGGCCTAAATAGTTTGTCTTTTTGC
128 AAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTAGGCCAAAATAGTTTGTCATTTTGC
* *
14395571 AAACAAGTTTCGGTCCT-TGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTC
193 AAACAAGTTTCGG-ACTATGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTC
* * * *
14395635 GGATGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGA
257 GGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCATGGA
*
14395700 CGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGA
322 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGA
14395765 ACATCCGAACCTATC
387 ACATCCGAACCTATC
14395780 AAA
1 AAA
14395783 CTTTTACGAT
Statistics
Matches: 361, Mismatches: 38, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
401 32 0.09
402 322 0.89
403 7 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTCTATCTCCTTGGTTCTTGGATGAACTCTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGAAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTAGGCCAAAATAGTTTGTCATTTTGCAAA
CAAGTTTCGGACTATGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGAC
GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCATGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGAACAT
CCGAACCTATC
Found at i:14395782 original size:62 final size:62
Alignment explanation
Indices: 14395594--14395774 Score: 263
Period size: 62 Copynumber: 2.9 Consensus size: 62
14395584 TCCTTGAATT
* * * * *
14395594 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14395656 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
14395718 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGAACATCCGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAC
14395775 CTATCAAACT
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 106 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14395896 original size:340 final size:339
Alignment explanation
Indices: 14395254--14395997 Score: 1067
Period size: 340 Copynumber: 2.2 Consensus size: 339
14395244 CGAACTTGTC
* * *
14395254 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
14395319 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTAGTCAAAAAC
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATCGACGAACATCCGAACTAGTCAAAAAC
* * * * * *
14395384 TTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTCTTTCTCTCTTGGCTCTTGAACGAACATCCGAACCTATCAAACTTTTA
* ** * * * **
14395449 TGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCGAGATGATCCATTCTTTCGAGCTATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
**** *
14395514 CAAACATTCCATGCTTGGGAAATCGCATAATTTGGCCTAAATAGTTTGTCTTTTTGCAAACAAGT
260 CAAACATTCCATGCTAAAAAAATCGCATAATTTGGCCTAAATAGTTTGTCATTTTGCAAACAAGT
*
14395579 TTCGGTCCTTGAATT
325 TTCGGTCCTTAAATT
* * *
14395594 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14395659 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGAACTTCCGAACTTGTCAAAAAC
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATCGACGAACATCCGAACTAGTCAAAAAC
*
14395724 TTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGAACATCCGAACCTATCAAACTTTTA
130 TTATTTACGTAAGAATTCTTTCTCTCTTGGCTCTTGAACGAACATCCGAACCTATCAAACTTTTA
*
14395789 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
* * * * * *
14395854 CGAACATTCCATGCTAAAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAGAAGT
260 CAAACATTCCATGCTAAAAAAATCGCATAATTTGGCCTAAATAGTTTGTCATTTTGCAAACAAGT
* *
14395919 TTTGGTCTTTAAATT
325 TTCGGTCCTTAAATT
* *
14395934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTGGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14395998 CTTTCATGAG
Statistics
Matches: 356, Mismatches: 47, Indels: 3
0.88 0.12 0.01
Matches are distributed among these distances:
339 32 0.09
340 324 0.91
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCATCGACGAACATCCGAACTAGTCAAAAACT
TATTTACGTAAGAATTCTTTCTCTCTTGGCTCTTGAACGAACATCCGAACCTATCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTC
AAACATTCCATGCTAAAAAAATCGCATAATTTGGCCTAAATAGTTTGTCATTTTGCAAACAAGTT
TCGGTCCTTAAATT
Found at i:14396100 original size:215 final size:215
Alignment explanation
Indices: 14395718--14396212 Score: 656
Period size: 215 Copynumber: 2.3 Consensus size: 215
14395708 CGAACTTGTC
* * * * * *
14395718 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGAACATCCGAACCTATCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14395783 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * * *
14395848 ATTTTTCGAACATTCCATGCTAAAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTAAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
14395913 AGAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AA-T
* * **
14395934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTGGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** *
14395998 CTTTCATGAGTTCTTTTATAACTTAGGTTCCGTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* ** *
14396062 AAA-TTTCCAAATATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
129 AAATTTTCCAAACATTCCATGCTAAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
14396126 AAACAAGTTTTGGACTGTTAAT
194 AAACAAGTTTTGGACTGTTAAT
* *
14396148 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14396213 AACTTATTTA
Statistics
Matches: 241, Mismatches: 34, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
214 29 0.12
215 179 0.74
216 33 0.14
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTAAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAAT
Found at i:14396248 original size:62 final size:62
Alignment explanation
Indices: 14396151--14396336 Score: 318
Period size: 62 Copynumber: 3.0 Consensus size: 62
14396141 TGTTAATAAT
*
14396151 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14396213 AACTTATTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14396275 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14396337 CTTTTACGAT
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14396465 original size:554 final size:554
Alignment explanation
Indices: 14395378--14396552 Score: 1667
Period size: 554 Copynumber: 2.1 Consensus size: 554
14395368 CGAACTAGTC
* * * *
14395378 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAAC-TTTGAACTTGTCAAA
* * * * * *
14395443 CTTTTATGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCGAGATGATCCATTCTTTCGAGCT
64 CTTTCATGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCA
* * * * * * *
14395508 ATTTTTCAAACATTCCATGCTTGGGAAATCGCATAATTTGGCCTAAATAGTTTGTCTTTTTGCAA
129 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGCCAAAATAGTTTGTCATTTTGCAA
* *
14395573 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGA
194 ACAAGTTTCGGTACTTGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGA
* * * *
14395638 TGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGA
259 CGAACTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCATGGACGA
* *
14395703 ACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACGAACA
324 ACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACAAACA
*
14395768 TCCGAACCTATCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAAT
389 TCCGAACCTATCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAAT
* * *
14395833 CCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTAAAAAAATCTCATCATTTGGTCTAAATAG
454 CCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTAAAAAAATCACATAATTTGGTCTAAATAG
* * *
14395898 TTTGTCATTTTGTAAAGAAGTTTTGGTCTTTAAATT
519 TTTGTCATTTTGTAAACAAGTTTCGGTCCTTAAATT
*
14395934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTGGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTT-GAACTTGTCAAA
14395998 CTTTCATGAGTTCTTTTATAACTTAGGTTCC-GTAAAGTATTCAAGACGATCCATTCCTTT-GAG
64 CTTTCATGAGTTCTTTTATAACTTAGGTTCCTG-AAAGTATTCAAGACGATCCATT-CTTTCGAG
* * * *
14396061 CAAATTTCCAAATATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
127 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGCCAAAATAGTTTGTCATTTTGC
* * * * * *
14396126 AAACAAGTTTTGG-ACTGTTAA-TAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
192 AAACAAGTTTCGGTACT-TGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTC
* *
14396189 GGACGAACTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGA
256 GGACGAACTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCATGGA
* * *
14396254 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAA
321 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACAA
* * **
14396319 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGAT
386 ACATCCGAACCTATCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGAT
* * * ****
14396384 GATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAA
451 AATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTAAAAAAATCACATAATTTGGTCTAAA
* *
14396449 TAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATT
516 TAGTTTGTCATTTTGTAAACAAGTTTCGGTCCTTAAATT
* *
14396488 AAAAACTTATTTACGTGTGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTT-GAACTTGTCAAA
14396553 AACTTATTTA
Statistics
Matches: 547, Mismatches: 65, Indels: 15
0.87 0.10 0.02
Matches are distributed among these distances:
554 336 0.61
555 181 0.33
556 30 0.05
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTGAACTTGTCAAACT
TTCATGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAAA
TTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGCCAAAATAGTTTGTCATTTTGCAAAC
AAGTTTCGGTACTTGAATTAAAAACTTAGTTACATGAGAATTGGTTCTCTCTTGGTTCTCGGACG
AACTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCATGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGCTCTTGAACAAACATC
CGAACCTATCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGATAATCC
ATTCCTTCGAGAAATTTTTCGAACATTCCATGCTAAAAAAATCACATAATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTCGGTCCTTAAATT
Found at i:14396590 original size:62 final size:62
Alignment explanation
Indices: 14396488--14396676 Score: 297
Period size: 62 Copynumber: 3.0 Consensus size: 62
14396478 TCCTTGAATT
* * * *
14396488 AAAAACTTATTTACGTGTGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
* * *
14396550 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
* *
14396612 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
14396674 AAA
1 AAA
14396677 CTTTTATGAT
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTTGTC
Found at i:14396654 original size:340 final size:338
Alignment explanation
Indices: 14395934--14396892 Score: 1374
Period size: 340 Copynumber: 2.8 Consensus size: 338
14395924 TCTTTAAATT
* * **
14395934 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTGGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
* * *
14395998 CTTTCATGAGTTCTTTTATAACTTAGGTTCC-GTAAAGTATTCAAGACGATCCATTCCTTTGAGC
66 CTTTTATGATTTCTTTTATAACTTA-GTTCCTG-AAAGTATTCAAGATGATCCATT-CTTTGAGC
* * *
14396062 AAATTTCCAAATATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
128 AAATTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * * * *
14396127 AACAAGTTTTGG-ACTGTTAA-TAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
193 AACAAGTTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* *
14396190 GACGAACTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGAC
257 GACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
14396255 GAACTTCCAAACTTGTC
322 GAACTTCCAAACTTGTC
14396272 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
*
14396337 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTTATGATTTCTTTTATAACTT-AGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAGCA
* * * * *
14396402 ATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
129 AATTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * *
14396467 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGTGAATTGGTTCTCTATTGGTTCTTGGA
194 ACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* *
14396532 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGTTTCTTGGACGA
259 CGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
14396597 ACTTTCGAACTTGTC
324 ACTTCCAAACTTGTC
* *
14396612 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
* * *
14396677 CTTTTATGATTTCTTTTATAACTTTGATTCCTAAAAAGTATTCAAGATAATCCATTCCTTAT-AG
66 CTTTTATGATTTCTTTTATAACTTAG-TTCCT-GAAAGTATTCAAGATGATCCATT-CTT-TGAG
* * * * * *
14396741 AAAATTTTCAAACATTCCATGCTCAAAAAATCCCATCATTCGGTCTAAATAGTTTATCATTTTGT
127 CAAATTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
*
14396806 AAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTT
192 AAACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTT
*
14396869 GGATGAACTTTCGAACTTGTCAAA
256 GGACGAACTTTCGAACTTGTCAAA
14396893 CTTTCACAAG
Statistics
Matches: 557, Mismatches: 53, Indels: 20
0.88 0.08 0.03
Matches are distributed among these distances:
338 33 0.06
339 154 0.28
340 243 0.44
341 123 0.22
342 3 0.01
343 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
CTTTTATGATTTCTTTTATAACTTAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTGAGCAAA
TTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTC
Found at i:14397009 original size:216 final size:216
Alignment explanation
Indices: 14396612--14397109 Score: 689
Period size: 216 Copynumber: 2.3 Consensus size: 216
14396602 CGAACTTGTC
*
14396612 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* ** * * *
14396677 CTTTTATGATTTCTTTTATAACTTTGATTCCTAAAAAGTATTCAAGATAATCCATTCCTTATAGA
65 CTTTCACAAGTTCTTTTATAACTTAGATTCCTAAAAAGTATTCAAGACAATCCATTCCTTATAGA
* * * *
14396742 AAATTTTCAAACATTCCATGCTCAAAAAATCCCATCATTCGGTCTAAATAGTTTATCATTTTGTA
130 AAATTTCCAAACATTCCATGCTCAAAAAATCACACCATTCGGTCAAAATAGTTTATCATTTTGTA
*
14396807 AACAAGTTTTGGTCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
* * *
14396829 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14396893 CTTTCACAAGTTCTTTTATAACTTAAGGTTCCT-TAAAGTATTCAAGACGATCCATTCCTT-TGA
65 CTTTCACAAGTTCTTTTATAACTT-AGATTCCTAAAAAGTATTCAAGACAATCCATTCCTTAT-A
* * * * *
14396956 GCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCATTTTG
128 GAAAATTTCCAAACATTCCATGCTCAAAAAATCACACCATTCGGTCAAAATAGTTTATCATTTTG
14397021 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* *
14397045 AAAAACTTATTTACGTGAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14397110 AACTTATTTA
Statistics
Matches: 247, Mismatches: 28, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
215 1 0.00
216 179 0.72
217 67 0.27
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACAAGTTCTTTTATAACTTAGATTCCTAAAAAGTATTCAAGACAATCCATTCCTTATAGAA
AATTTCCAAACATTCCATGCTCAAAAAATCACACCATTCGGTCAAAATAGTTTATCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14397144 original size:62 final size:62
Alignment explanation
Indices: 14397045--14397171 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
14397035 ACTGTTAATT
*
14397045 AAAAACTTATTTACGTGAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTC
* * *
14397107 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTC
14397169 AAA
1 AAA
14397172 CTTTTACGAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTC
Found at i:14397326 original size:278 final size:277
Alignment explanation
Indices: 14396210--14397449 Score: 1093
Period size: 278 Copynumber: 4.5 Consensus size: 277
14396200 CGAACTTGTC
* * * * *
14396210 AAAAACTTATTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14396275 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
*
14396340 TTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATT
* *
14396405 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
195 TTTCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
*
14396470 AGTTTCGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
*
14396488 AAAAACTTATTTACGTGTGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14396553 AACTTATTTACATGAGTATTGTTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC--AAAC
* * * * * * * ** **
14396618 TTATTTACGTGAGAATTGTTTCTCT--CTT-GATTCTTGGACGAA-CATCCGAACTTG-T-CAAA
129 -T-TTTAC----GATTTCTTT-TATAACTTCGGTTCCT-GA--AAGTATTC-AAGATGATCCATT
* * * ** * * * * *
14396677 CTTTTATG-ATTTCTTTTATAAC-TTTGATTC-CTA-AAA--A-GT-A--T--TC-AAGATAATC
183 CTTTGA-GCAATT-TTTCA-AACATTCCATGCTCGAGAAATCACATAATTTGGTCTAA-ATAGTT
** ** * *** * **
14396729 CAT-TCCTTATAGAA-AA-TTTTCAAACATTCCATGCT
244 TGTCTTTTTGTA-AACAAGTTTT-GGTCCTTGAAT--T
** * * * * * ** * * **
14396764 CAAAAAATCCCATCATT-CGGTCTA-AATAGTTTATC-ATT--TT-GTAAAC-AAGTTTTGGTCT
1 --AAAAA-CTTAT--TTAC-GT-GAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAAC-
* * * * *
14396822 TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTCGAACT
58 TT--GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
* * * * * *
14396886 TGTCAAACTTTCACAAGTTCTTTTATAACTTAAGGTTCCTTAAAGTATTCAAGACGATCCATTCC
121 TGTCAAACTTTTACGATTTCTTTTATAACTT-CGGTTCCTGAAAGTATTCAAGATGATCCATT-C
* * ** * *
14396951 TTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATCACACCATTTGGTCAAAATAGTTTGTCA
184 TTTGAGCAATTTTTCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCT
* *
14397016 TTTTGTAAACAAGTTTTGG-ACTGTTAATT
249 TTTTGTAAACAAGTTTTGGTCCT-TGAATT
** * * *
14397045 AAAAACTTATTTACGTGAGAATTGGTTCTCTCGTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14397110 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
14397175 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
131 TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAGCAATT
*
14397240 TTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
195 TTTCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
14397305 AGTTTTGGTCCTTGAATT
260 AGTTTTGGTCCTTGAATT
* * *
14397323 AAAAACTTATTTACGTGAGAACTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
14397388 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTCGTCAAA
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14397450 AACTTATTTC
Statistics
Matches: 735, Mismatches: 161, Indels: 132
0.71 0.16 0.13
Matches are distributed among these distances:
269 2 0.00
270 11 0.01
271 10 0.01
272 12 0.02
273 17 0.02
274 21 0.03
275 11 0.01
276 25 0.03
277 12 0.02
278 402 0.55
279 93 0.13
280 15 0.02
281 20 0.03
282 15 0.02
283 14 0.02
284 13 0.02
285 20 0.03
286 14 0.02
287 8 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTATTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTT
TTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTGAGCAATTT
TTCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
GTTTTGGTCCTTGAATT
Found at i:14397421 original size:62 final size:61
Alignment explanation
Indices: 14397323--14397510 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 61
14397313 TCCTTGAATT
* * * * *
14397323 AAAAACTTATTTACGTGAGAACTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
* *
14397385 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTCGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTC
*
14397447 AAAAACTTATTT-CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTC
14397508 AAA
1 AAA
14397511 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
61 48 0.42
62 66 0.58
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTC
Found at i:14398563 original size:32 final size:32
Alignment explanation
Indices: 14398527--14398589 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
14398517 GCCATCCATA
*
14398527 CATGTACCTAAAATATATTAATAAGCTAATTG
1 CATGTACCTAAAACATATTAATAAGCTAATTG
* *
14398559 CATGTACCTGAAACATATTAATCAGCTAATT
1 CATGTACCTAAAACATATTAATAAGCTAATT
14398590 AAATTCGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (32 bp):
CATGTACCTAAAACATATTAATAAGCTAATTG
Found at i:14398678 original size:39 final size:39
Alignment explanation
Indices: 14398635--14398733 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
14398625 TTAATTTGTC
* *
14398635 TCAAACTTAGACATATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
14398674 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
14398713 TCAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
14398734 CCCTATTTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
Found at i:14401889 original size:50 final size:50
Alignment explanation
Indices: 14401803--14401926 Score: 151
Period size: 50 Copynumber: 2.4 Consensus size: 50
14401793 TGCATGACTT
*
14401803 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGGAAGTTACATAATGCATG-TCAG
* * * *
14401855 GATTTATGATGCATATTTAACTAACATGTAAGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
* *
14401905 TATTTATGATGCAAACTTAACT
1 GATTTATGATGCAAATTTAACT
14401927 GATCATGAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.02
50 48 0.76
51 9 0.14
52 5 0.08
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGGAAGTTACATAATGCATGTCAG
Found at i:14402167 original size:17 final size:17
Alignment explanation
Indices: 14402136--14402168 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14402126 CAAACACTTA
14402136 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
14402153 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
14402169 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:14403588 original size:18 final size:18
Alignment explanation
Indices: 14403552--14403596 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
14403542 CACTCTTTCT
14403552 TTTCTTTCTTCATTCTCGA
1 TTTCTTT-TTCATTCTCGA
14403571 TTTCTTTTTCAATT-TCGA
1 TTTCTTTTTC-ATTCTCGA
*
14403589 TCTCTTTT
1 TTTCTTTT
14403597 CTCACACTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.11, C:0.22, G:0.04, T:0.62
Consensus pattern (18 bp):
TTTCTTTTTCATTCTCGA
Found at i:14403667 original size:21 final size:20
Alignment explanation
Indices: 14403642--14403694 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
14403632 ATTCTTTTTT
*
14403642 TCAATTTCTTTTTTTCTTCTC
1 TCAATTTCTTTATTT-TTCTC
* *
14403663 TCAATCTCCTTTATTTTTCTT
1 TCAAT-TTCTTTATTTTTCTC
*
14403684 TCATTTTCTTT
1 TCAATTTCTTT
14403695 CATCAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 5 0.19
21 13 0.50
22 8 0.31
ACGTcount: A:0.11, C:0.23, G:0.00, T:0.66
Consensus pattern (20 bp):
TCAATTTCTTTATTTTTCTC
Found at i:14404617 original size:28 final size:28
Alignment explanation
Indices: 14404586--14404657 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
14404576 TCTTTCTTCT
14404586 ATTTTTTTCTTTTTTTTCAA-ACTTTGAA
1 ATTTTTTTCTTTTTTTTCAATA-TTTGAA
* *
14404614 A-TTTTTTCTCTTTTTTCAATATTTGGA
1 ATTTTTTTCTTTTTTTTCAATATTTGAA
*
14404641 TTTTTTTTCTTTTTTTT
1 ATTTTTTTCTTTTTTTT
14404658 TGATTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.15, C:0.10, G:0.04, T:0.71
Consensus pattern (28 bp):
ATTTTTTTCTTTTTTTTCAATATTTGAA
Found at i:14405967 original size:50 final size:51
Alignment explanation
Indices: 14405842--14405983 Score: 148
Period size: 50 Copynumber: 2.8 Consensus size: 51
14405832 AACTAATGGA
* * *
14405842 TTACTAAATGCATGAC-TTGATTTAATGATGCAAACTTTAACTAACATGGGAG
1 TTACTTAATGCATGTCATT-ATTT-ATGATGCAAACTTTAACTAACATGGAAG
* ** * *
14405894 TTACATAATGCATGAT-AGGATTTATGATGCATA-TTTAACTAACATGTAAG
1 TTACTTAATGCATG-TCATTATTTATGATGCAAACTTTAACTAACATGGAAG
*
14405944 TTACTTAATGCATGTCATTATTTATGATACAAAC-TTAACT
1 TTACTTAATGCATGTCATTATTTATGATGCAAACTTTAACT
14405984 GGTCATGAGA
Statistics
Matches: 73, Mismatches: 13, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
49 1 0.01
50 47 0.64
51 9 0.12
52 16 0.22
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (51 bp):
TTACTTAATGCATGTCATTATTTATGATGCAAACTTTAACTAACATGGAAG
Found at i:14406224 original size:17 final size:17
Alignment explanation
Indices: 14406193--14406225 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14406183 CAAACACTTA
14406193 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
14406210 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
14406226 AGTCCTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:14407595 original size:11 final size:11
Alignment explanation
Indices: 14407557--14407614 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
14407547 TTTTTCTATC
14407557 TCTTTT-TCTT
1 TCTTTTCTCTT
*
14407567 CCTTTTCATCTTTT
1 TCTTTTC-TC--TT
14407581 TCTTTTCTCTT
1 TCTTTTCTCTT
*
14407592 TCTTTTCACTT
1 TCTTTTCTCTT
*
14407603 TCTTTCCTCTT
1 TCTTTTCTCTT
14407614 T
1 T
14407615 TCTCTCATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
10 5 0.13
11 22 0.56
12 2 0.05
13 2 0.05
14 8 0.21
ACGTcount: A:0.03, C:0.28, G:0.00, T:0.69
Consensus pattern (11 bp):
TCTTTTCTCTT
Found at i:14407607 original size:22 final size:24
Alignment explanation
Indices: 14407557--14407677 Score: 71
Period size: 22 Copynumber: 5.2 Consensus size: 24
14407547 TTTTTCTATC
*
14407557 TCTTTT-TCTTCCTTTTCATCTTTT
1 TCTTTTCTCTTTCTTTTCATC-TTT
14407581 TCTTTTCTCTTTCTTTTCA-C-TT
1 TCTTTTCTCTTTCTTTTCATCTTT
* *
14407603 TCTTTCCTCTTT-TCTCTCAT-TTT
1 TCTTTTCTCTTTCT-TTTCATCTTT
* * *
14407626 TC-CTTCT-TTT-TTTTTA-ATTT
1 TCTTTTCTCTTTCTTTTCATCTTT
* *
14407646 TCTTTTCTTTTTCATTCTCACTCTTT
1 TCTTTTCTCTTTC-TTTTCA-TCTTT
14407672 TCTTTT
1 TCTTTT
14407678 TCCCTCACTT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
20 8 0.11
21 9 0.12
22 23 0.31
23 4 0.05
24 11 0.15
25 11 0.15
26 9 0.12
ACGTcount: A:0.06, C:0.25, G:0.00, T:0.69
Consensus pattern (24 bp):
TCTTTTCTCTTTCTTTTCATCTTT
Found at i:14407626 original size:29 final size:27
Alignment explanation
Indices: 14407581--14407634 Score: 65
Period size: 29 Copynumber: 1.9 Consensus size: 27
14407571 TTCATCTTTT
*
14407581 TCTTTTCTCTTTCTTTTCACTTTCTTTCC
1 TCTTTTCTCTATCTTTTC-C-TTCTTTCC
14407610 TCTTTTCTCTCAT-TTTTCCTTCTTT
1 TCTTTTCTCT-ATCTTTTCCTTCTTT
14407635 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 6 0.26
28 1 0.04
29 15 0.65
30 1 0.04
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.67
Consensus pattern (27 bp):
TCTTTTCTCTATCTTTTCCTTCTTTCC
Found at i:14407657 original size:11 final size:11
Alignment explanation
Indices: 14407575--14407658 Score: 57
Period size: 11 Copynumber: 7.7 Consensus size: 11
14407565 TTCCTTTTCA
14407575 TCTTTTTCTTT
1 TCTTTTTCTTT
*
14407586 TCTCTTTCTTT
1 TCTTTTTCTTT
**
14407597 TCACTTTCTTT
1 TCTTTTTCTTT
* *
14407608 CCTCTTTTC-TC
1 TCT-TTTTCTTT
*
14407619 TCATTTTTC-CT
1 TC-TTTTTCTTT
14407630 TCTTTTT-TTT
1 TCTTTTTCTTT
**
14407640 TAATTTTCTTT
1 TCTTTTTCTTT
14407651 TCTTTTTC
1 TCTTTTTC
14407659 ATTCTCACTC
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
10 11 0.20
11 39 0.71
12 5 0.09
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:14409932 original size:22 final size:21
Alignment explanation
Indices: 14409895--14409936 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14409885 TAGCCTTTTG
14409895 TTTTTTTTATACTTTCGAAACA
1 TTTTTTTTATACTTTC-AAACA
14409917 TTTTTTTTAATA-TTTCAAAC
1 TTTTTTTT-ATACTTTCAAAC
14409937 TTTGCACTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.21
22 12 0.63
23 3 0.16
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.57
Consensus pattern (21 bp):
TTTTTTTTATACTTTCAAACA
Found at i:14410315 original size:11 final size:11
Alignment explanation
Indices: 14410301--14410328 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
14410291 AGACACTTAA
14410301 GGTGATGGAAG
1 GGTGATGGAAG
14410312 GGTGATGGAAG
1 GGTGATGGAAG
14410323 GGTGAT
1 GGTGAT
14410329 AGAAAGGACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.54, T:0.21
Consensus pattern (11 bp):
GGTGATGGAAG
Found at i:14411923 original size:61 final size:62
Alignment explanation
Indices: 14411828--14412012 Score: 264
Period size: 62 Copynumber: 3.0 Consensus size: 62
14411818 GTTAATTAAT
* * * *
14411828 AACTTAGTTACGTGAGAACTGTTTCTCTCTTGGTTCTTGAATGAAC-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14411889 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGACAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14411951 AACTTATTTACTTAAGAATTGTTTCTATCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14412013 CTTTAACGAT
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 42 0.38
62 68 0.62
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14412275 original size:62 final size:62
Alignment explanation
Indices: 14412164--14412352 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14412154 TCCTTGAATT
** * * *
14412164 AAAAACTTATTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14412226 AAAAACTTATTTACGTGAGTATTATTTCTCTCTTGATTCATGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
14412288 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14412350 AAA
1 AAA
14412353 CTTTTATGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14412340 original size:340 final size:339
Alignment explanation
Indices: 14411611--14412563 Score: 1258
Period size: 340 Copynumber: 2.8 Consensus size: 339
14411601 TCTTTAAATT
* * * * * *
14411611 AAAAACTTATTTACGTGATAATTGTATCTC-CTAT-GTTCTTGGATGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * *
14411674 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCCTT-GAG
65 ACTTTAACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATT-CCTTCGAG
* * * *
14411738 CAAATTTCCTAACATTCCATGCTC-GAGAAATCACATCATTAGGTCAAAATAGTTTGTCATTTTG
129 CAATTTTTCGAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * * * *
14411802 TAAA-AAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAACTGTTTCTCTCTTGGTTCT
193 TAAACAAGTTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCT-TCTTGGTTCT
* * * * *
14411865 TGAATGAAC-TCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
256 TGGATGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCATGG
14411929 ACGAACTTCCAAACTTGAC
321 ACGAACTTCCAAACTTGAC
* * *
14411948 AAAAACTTATTTACTTAAGAATTGTTTCTATCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14412013 CTTTAACGATTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCT
66 CTTTAACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCGAGCA
* * * *
14412078 ATTTTTCGAACATTCCATGCTCGGAAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
14412143 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGA
196 ACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCT-TCTTGGTTCTTGGA
*
14412208 TGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTATTTCTCTCTTGATTCATGGACGA
260 TGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCATGGACGA
* *
14412273 ACTTCCGAACTTGTC
325 ACTTCCAAACTTGAC
* * *
14412288 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
14412353 CTTTTATGATTTCTATTATAACTTCGGTT-CTAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
66 CTTTAACGATTTCTTTTATAACTTCGGTTCCT-AAAAGTATTCAAGATGATCCATTCCTTCGAGC
* *
14412417 AATTTTTTGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTA
130 AATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
* *
14412482 AACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTCCTTGGTTCTTGG
195 AACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTTCTTGGTTCTTGG
** *
14412546 ACAAACTTTTGAACTTGT
259 ATGAACTTTCGAACTTGT
14412564 TAAACTTTCA
Statistics
Matches: 539, Mismatches: 68, Indels: 16
0.87 0.11 0.03
Matches are distributed among these distances:
337 29 0.05
338 136 0.25
339 89 0.17
340 285 0.53
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTAACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCGAGCA
ATTTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTTCTTGGTTCTTGGAT
GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGATTCATGGACGAA
CTTCCAAACTTGAC
Found at i:14412690 original size:215 final size:216
Alignment explanation
Indices: 14412288--14412783 Score: 653
Period size: 215 Copynumber: 2.3 Consensus size: 216
14412278 CGAACTTGTC
* * * * *
14412288 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14412353 CTTTTATGATTTCTATTATAACTTCGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTATTATAACTTAGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
*** *
14412418 ATTTTTTGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
14412483 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * ** *
14412504 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14412568 CTTTCACGAGTTCTTTTATAACTTAGGTTCCT-TAAAGTATTCAAGATGATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTATTATAACTTAGGTT-CTAAAAAGTATTCAAGATAATCCATTCCTTCT-AG
*
14412631 CAAA-TTTCCAAATATTCCATGCTC-GACAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
129 -AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
*
14412694 GTAAATAAGTTTTGGACTGTTAATT
192 GTAAACAAGTTTTGGACTGTTAATT
* * * *
14412719 AATAACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14412784 AAATTATTTA
Statistics
Matches: 241, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
214 3 0.01
215 175 0.73
216 63 0.26
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTATTATAACTTAGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14412831 original size:62 final size:62
Alignment explanation
Indices: 14412722--14412969 Score: 361
Period size: 62 Copynumber: 4.0 Consensus size: 62
14412712 GTTAATTAAT
* * * *
14412722 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
14412784 AAATTATTTACGTGAGAATTGTTTCTCTCTTGTTTCGTGGACAAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14412846 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
14412908 AACTTATTTACGTAAGAATTGTTTATCTCTTAGTTCTTGGACGAACATCTGAACCTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14412970 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 168 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14413222 original size:62 final size:62
Alignment explanation
Indices: 14413156--14413315 Score: 239
Period size: 62 Copynumber: 2.6 Consensus size: 62
14413146 TTATCTCCTA
*
14413156 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAACTGTTTCTCTTTTG
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAACTGTTTCTCTCTTG
* * * * * *
14413218 GTTCTTTGATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAACTGTTTCTCTCTTG
* *
14413280 GTTCTTGGACGAACATCCGAACTTGTCAAAATTTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTA
14413316 CTATTTCTTT
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
GTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAACTGTTTCTCTCTTG
Found at i:14413282 original size:402 final size:401
Alignment explanation
Indices: 14412504--14413310 Score: 1136
Period size: 402 Copynumber: 2.0 Consensus size: 401
14412494 TCTTTAAATT
* * * * * *
14412504 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTTGAACTTGTTAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTTGGACAAACATCTGAACCTGTCAAAC
*
14412569 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTTGAGCAA
* * *
14412634 ATTTCCAAATATTCCATGCTCGACAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACACTCCATGCTCGACAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* * * * * * *
14412699 TAAGTTTTGGACTGTTAATTAATAACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGAC
196 CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTTATCTCCTAGTTCCTGGAC
* * * *
14412764 GAACTTCCGAACTTGTCAAAAAATTATTTACGTGAGAATTGTTTCTCTCTTGTTTCGTGGACAAA
261 GAACTTCCGAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCTCTCTTGGTTCGTGGACAAA
*
14412829 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
14412894 CCGAACTTGTC
391 CCGAACTTGTC
*
14412905 AAAAACTTATTTACGTAAGAATTGTTTATCT-CTTAGTTCTTGGACGAACATCTGAACCTGTCAA
1 AAAAACTTATTTACGTAAGAATTG--TATCTCCTTAGTTCTTGGACAAACATCTGAACCTGTCAA
* * *
14412969 ACTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
64 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTT-GAG
* * * * * * *
14413033 CAATTTTTCGAACACTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
128 CAAATTTCCAAACACTCCATGCTCGA-CAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
14413097 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGTATTGTTTATCTCCTAGTTCT
192 TAAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTTATCTCCTAGTTCC
* * * *
14413161 TGGACGAACTTCCGAACTTGTCAAAAATTTATTTACATAAGAACTGTTTCTCTTTTGGTTCTTTG
256 TGGACGAACTTCCGAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCTCTCTTGGTTCGTGG
** **
14413226 ATGAACTTCTGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
321 ACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
14413291 AACATCCGAACTTGTC
386 AACATCCGAACTTGTC
14413307 AAAA
1 AAAA
14413311 TTTTACTATT
Statistics
Matches: 356, Mismatches: 45, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
401 28 0.08
402 321 0.90
403 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTTAGTTCTTGGACAAACATCTGAACCTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGATGATCCATTCCTTTGAGCAA
ATTTCCAAACACTCCATGCTCGACAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGTTTATCTCCTAGTTCCTGGAC
GAACTTCCGAACTTGTCAAAAAATTATTTACATAAGAACTGTTTCTCTCTTGGTTCGTGGACAAA
CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTGTC
Found at i:14413781 original size:62 final size:62
Alignment explanation
Indices: 14413675--14413801 Score: 209
Period size: 62 Copynumber: 2.0 Consensus size: 62
14413665 ACTGTTAATT
* * *
14413675 AAAAGCTTCTTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTATCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14413737 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGGTTCTATCTTGGTTCTTGGACGAACATCCGAACTTGTC
14413799 AAA
1 AAA
14413802 CTTTTACGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGGTTCTATCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14414011 original size:278 final size:278
Alignment explanation
Indices: 14413467--14414062 Score: 830
Period size: 278 Copynumber: 2.2 Consensus size: 278
14413457 ATTAAAAATG
* * * * *
14413467 TATTTATGTGAGAATTGTATCTC-CTTGGTTATTGGACGAACTTTCAAACTTGTCAAACTTTCAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTCAC
*
14413531 GAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
66 GAGTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
*
14413596 AAACATTCCATGCTTGAGAAATGACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTT
131 AAACATTCCATGCTTGAGAAATGACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTT
* * *
14413661 TTGGACTGTTAATTAAAAGCTTCTTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGACGAACAT
196 TTGGACTGTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGACGAACAT
14413726 CCGAACTTGTCAAAAACT
261 CCGAACTTGTCAAAAACT
* * *
14413744 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTCAC
* * * * * *
14413809 GATTTCTTTTATAAGTTTA-GTTTCTAAAAGTATTCAAGATGATCCATT-CTTTCGAGTAATTTT
66 GAGTTCTTTTATAA-CTTAGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTT-GAGCAAATTT
* * * *
14413872 TCGAACATTGCATGCTTTG-GAAATCG-CATAATTTGGTCTAAATAGTTTGTC-TATTTGTAAAC
129 CCAAACATTCCATGC-TTGAGAAAT-GACATAATTTGGTCAAAATAGTTTGTCAT-TTTGTAAAC
* *
14413934 AAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
191 AAGTTTTGG-ACTGTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGAC
* *
14413998 GAACTTTCGAACTTGTCAAAAACT
255 GAACATCCGAACTTGTCAAAAACT
*
14414022 TATTTACGTGAGTATTGTTTCTCT-TTGGTTCTTGGACGAAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
14414063 TTTCGATCTT
Statistics
Matches: 283, Mismatches: 29, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
277 42 0.15
278 232 0.82
279 9 0.03
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (278 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTCAC
GAGTTCTTTTATAACTTAGGTTCCTAAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTCC
AAACATTCCATGCTTGAGAAATGACATAATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGACTGTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTATCTTGGTTCTTGGACGAACAT
CCGAACTTGTCAAAAACT
Found at i:14414154 original size:62 final size:62
Alignment explanation
Indices: 14413953--14414326 Score: 466
Period size: 62 Copynumber: 6.0 Consensus size: 62
14413943 TCCTTGAATT
* *
14413953 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
14414015 AAAAACTTATTTACGTGAGTATTGTTTCTCT-TTGGTTCTTGGACGAACTTTCGATCTTATG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
14414076 AAAAACTTACTAACGTGAGAATTGCTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14414138 AAAAATTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGTAAATT-CGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAACTTGTC
*** * * * * *
14414200 AAAAACTTATTTACAAAATAATTGTTTCTCTCTTAGTTCTTGTACGAA-TATCCGAACTAGTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTC
* * * *
14414262 AAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGACCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14414324 AAA
1 AAA
14414327 CTTTGACGAT
Statistics
Matches: 265, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
60 1 0.00
61 57 0.22
62 203 0.77
63 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14414575 original size:62 final size:62
Alignment explanation
Indices: 14414478--14414598 Score: 206
Period size: 62 Copynumber: 2.0 Consensus size: 62
14414468 TCCTTGAATT
* * * *
14414478 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATG
1 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATG
14414540 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
14414599 GTCAAACTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTATG
Found at i:14414739 original size:277 final size:278
Alignment explanation
Indices: 14414219--14414865 Score: 994
Period size: 277 Copynumber: 2.3 Consensus size: 278
14414209 TTTACAAAAT
* * * *
14414219 AATTGTTTCTCTCTTAGTTCTTGTACGAA-TATCCGAAC-TAGTTAAAAATTTATTTACGTAAGA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTA-TCAAAAACTTATTTACGTAAGA
* *
14414282 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGACCTTGTCAAACTTTGACGATTTCTTTTATA
64 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTGACGATTTCTTTTAGA
* * *
14414347 ACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGC
129 ACTTCAGATCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGC
* *
14414412 TAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTTGGTCCTTGAAT
194 TAGGGAAATCGCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACAAGTTTTGGTCCTTGAAT
*
14414477 TAAAAACTTATTTACGTGAG
259 TAAAAACTTATTCACGTGAG
* * *
14414497 TATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATGAAAAACTTATTTAAGTAAGAAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAAT
*
14414562 TGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA-TTCTTTTAGAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTGACGATTTCTTTTAGAAC
* * * *
14414626 TTTAGATCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCATGCTC
131 TTCAGATCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGCTA
* *
14414691 TGGAAATCGCATAATTTGGTCTAAATAGTTTGCCTTTTTGTAAACAAGTTTTGGTCCTTGAATTA
196 GGGAAATCGCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACAAGTTTTGGTCCTTGAATTA
14414756 AAAACTTATTCACGTGAG
261 AAAACTTATTCACGTGAG
* ** * * *
14414774 AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAAT
*
14414839 TATTTCTCTCTTGGTTCTTGGACGAAC
66 TGTTTCTCTCTTGGTTCTTGGACGAAC
14414866 TTTTGATCTT
Statistics
Matches: 336, Mismatches: 31, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
277 229 0.68
278 104 0.31
279 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (278 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTATCAAAAACTTATTTACGTAAGAAT
TGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTGACGATTTCTTTTAGAAC
TTCAGATCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGCTA
GGGAAATCGCATAATTTGGTCTAAATAGTTTGCATTTTTGTAAACAAGTTTTGGTCCTTGAATTA
AAAACTTATTCACGTGAG
Found at i:14414852 original size:62 final size:62
Alignment explanation
Indices: 14414755--14415067 Score: 410
Period size: 62 Copynumber: 5.0 Consensus size: 62
14414745 TCCTTGAATT
* * *
14414755 AAAAACTTATTCACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * *
14414817 AAAAACTTATTTACGTGAGTATTATTTCTCTCTTGGTTCTTGGACGAACTTTTGATCTTTTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * *
14414879 AAAAACTTACTAACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * ** *
14414941 AAAAACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
*** *
14415003 AAAAACTTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
14415065 AAA
1 AAA
14415068 CTTTTACGAT
Statistics
Matches: 216, Mismatches: 35, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 216 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:14415001 original size:803 final size:803
Alignment explanation
Indices: 14413458--14416240 Score: 2857
Period size: 803 Copynumber: 3.4 Consensus size: 803
14413448 GGTCTTTAAA
* * * * * * * *
14413458 TTAAAAATGTATTTATGTGAGAATTGTATCTC-CTTGGTTATTGGACGAACTTTCAAACTTGTCA
1 TTAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
* * * * *
14413522 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAG
66 AACTTTGACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTGAG
* * * * *
14413587 CAAA-TTTCCAAACATTCCATGCT-TGAGAAAT-GACATCATTTGGTCAAAATAGTTTGTCA-TT
130 -AAATTTTTCAAACATTCCATGCTCAGGGAAATCG-CATTATTTGGTCTAAATAGTTTGT-ATTT
* * * *
14413648 TTGTAAACAAGTTTTGG-ACTGTTAATTAAAAGCTTCTTTACGTGAGAATTGGTTCTATCTTGGT
192 TTGTAAACAAGTTTTGGTACT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGT
* * *
14413712 TCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCT
256 TCTTGGACGAACTTCCGAACTTGTGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCT
* * *
14413777 TGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAAGTTTAGTTTCTAAAAGTAT
321 TGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTAGTTCCTAAAAGTAT
*
14413842 TCAAGATGATCCATTCTTTCGAGTAATTTTTCGAACATTGCATGCTTTGGAAATCGCATAATTTG
386 TCAAGATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCATGCTTTGGAAATCGCATAATTTG
*
14413907 GTCTAAATAGTTTGTCTATTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAG
451 GTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAG
14413972 AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTAT
516 AATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTAT
*
14414037 TGTTTCTCT-TTGGTTCTTGGACGAACTTTCGATCTTATGAAAAACTTACTAACGTGAGAATTGC
581 T-TTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTTTGAAAAACTTACTAACGTGAGAATTGC
* * *
14414101 TTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAAAATTTATTTACGTGAAAATTGTTTC
645 TTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTC
* * *
14414166 TCTCTTGGTTCTTGGACGTAAATTCGAACTTGTCAAAAACTTATTTACAAAATAATTGTTTCTCT
710 TCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAACTTATTTACAAAAGAATTGTTTCTCT
* * * *
14414231 CTTAGTTCTTGTACGAATATCCGAACTAG
775 CTTGGTTCTTGGACGAACATCCGAACTTG
*
14414260 TTAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGACCTTGTCA
1 TTAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
14414325 AACTTTGACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAG
66 AACTTTGACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAG
14414390 AAATTTTTCAAACATTCCATGCT-AGGGAAATCGCATTATTTGGTCTAAATAGTTTGTATTTTTG
130 AAATTTTTCAAACATTCCATGCTCAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTATTTTTG
* * *
14414454 TAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTT
195 TAAACAAGTTTTGGTACTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
*
14414519 GGACGAACTTCCGAACTTATGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
260 GGACGAACTTCCGAACTTGTGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
14414584 CGAACATCCGAACTTGTCAAACTTTTACGA-TTCTTTTAGAACTTTAGATCCTAAAAGTATTCAA
325 CAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTAGTTCCTAAAAGTATTCAA
*
14414648 GATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCATGCTCTGGAAATCGCATAATTTGGTCT
390 GATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCATGCTTTGGAAATCGCATAATTTGGTCT
* *
14414713 AAATAGTTTGCCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTCACGTGAGAATT
455 AAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATT
*
14414778 GGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGTATTATT
520 GGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATT-TT
*
14414843 TCTCTCTTGGTTCTTGGACGAACTTTTGATCTTTTGAAAAACTTACTAACGTGAGAATTGCTTCT
584 TCTCTCTTGGTTCTTGGACGAACTTTCGATCTTTTGAAAAACTTACTAACGTGAGAATTGCTTCT
*
14414908 CTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTATGTGAAAATTGTTTCTCTC
649 CTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTC
14414973 TTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAACTTATTTACAAAAGAATTGTTTCTCTCTTG
714 TTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAACTTATTTACAAAAGAATTGTTTCTCTCTTG
*
14415038 GTTCTTGGACGAACATTCGAACTTG
779 GTTCTTGGACGAACATCCGAACTTG
* * *** ** * * * ** **
14415063 -T-CAAA-CT-TTTACG-ATTTATT-TTATAACT-TCGGTTCCT-GA--AAGTAT-TTAAGATGA
1 TTAAAAATTTATTTACGTAAGAATTGTT-TCTCTCTTGGTTCTTGGACGAA-CATCCGAACTTG-
** * * ** * * ** *
14415117 TCCATTCTTTCGA-GCA-AT-TTTTCTAACATTC-CATGCTAGGGAAATCGCATT--ATTTGGTC
63 T-CAAACTTT-GACG-ATTTCTTTTATAAC-TTCGGTTCCT---GAAA--GTATTCAAGATGATC
* ** ** * * * * * *** *
14415176 TAAATAGTTT--G-TCTTTTTGCAAACAAGTT--TTGGTCCGTGAATTAAAAACTTATTTACGT-
119 --CATTCTTTGAGAAATTTTT-CAAAC-A-TTCCATGCTCAGGGAAAT-CGCA-TTATTT-GGTC
* * * * * ** * * *
14415235 GAGAATTGGTTCTCTCTTGGTTCT-TGGATGAACTTTT-GAACTTG--TCAAAAACTTATTTACG
176 TA-AA-TAGTT-TGTATT--TT-TGT-AAACAAGTTTTGGTACTTGAATTAAAAACTTATTTACG
* *
14415296 TGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTGAAAAACTTATTTAAGTAA
234 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTGAAAAACTTATTTAAGTAA
* *
14415361 GAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAACTTTTACGATTTCTTTTA
299 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTA
** * ** * * * *
14415426 TAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAATTTTTCGAACGTTCCAT
364 TAACTTTAGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCAT
* * * * * * * *
14415491 GCTTTGAAAATC-CTGTCATCTGGTCTAAATAGTCTGTCATTTTGTAAACAAGTTTTGGTCTTTA
429 GCTTTGGAAATCGC-ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTG
* * *
14415555 AATTAAAAACTTATTTACGTGAGAATT-GTAC-CTCCTTAGTTCTTGGACAAACTTTCGAACTTG
493 AATTAAAAACTTATTTACGTGAGAATTGGTTCTCT-CTTGGTTCTTGGACGAACTTTCGAACTTG
* * ** * * * *
14415618 TC--AAAC-T-TTCAC--GAGT-TCTTTTATAACATAGGTTCCTTAAAGTATTC-AAGATTATCC
557 TCAAAAACTTATTTACGTGAGTAT-TTTTCTCTC-TTGGTT-CTT---GGA--CGAA-CTT-TCG
* * * * * *
14415675 ATTCCTTTGAGCAAATTTACAAACATTCCATGCTCGAGAAATCACAT-CATTTGGTCAAAATAGT
612 A-TCTTTTGA-AAAACTTAC-TA-A---C--G-T-GAG-AAT----TGC--TT-CTC----T-CT
* * * * * *** * * *
14415739 TTGTCATTTTGTAAACAAGTTTTGAAC-TGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCT
653 TGGT--TCTTGGACA-AACTTCCAAACTTG-TCA--AA-AACTTATTTACGTGAAAATTGTTTCT
* * * * ***
14415803 CTCTTAGTTCTTGGATGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTC
711 CTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAACTTATTTACAAAAGAATTGTTTCTCTC
14415868 TTGGTTCTTGGACGAACATCCGAACTTG
776 TTGGTTCTTGGACGAACATCCGAACTTG
* * *
14415896 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 TTAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
* *
14415961 AACTTTTACGATTTCTTTTATAACTTCGGTTGCTGAAAGTATTCAAGATGATCCATTCTTTCGA-
66 AACTTTGACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAG
* * * *
14416025 ATAATTTTTCGAACATTCCATGCTCA-GGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTT
130 A-AATTTTTCAAACATTCCATGCTCAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTATTTTT
* *
14416089 GTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCT
194 GTAAACAAGTTTTGGTACTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCT
* * *
14416154 TGGACGAACTTTCGAACATT-TGAAAAACTTATTTACGTGAA-TATTGTTTCTCTCTTGGTTCTT
259 TGGACGAACTTCCGAAC-TTGTGAAAAACTTATTTAAGT-AAGAATTGTTTCTCTCTTGGTTCTT
*
14416217 GGACAAACTTCC-AATCTTGTCAAA
322 GGACAAACATCCGAA-CTTGTCAAA
14416241 AACTTATTTA
Statistics
Matches: 1636, Mismatches: 234, Indels: 191
0.79 0.11 0.09
Matches are distributed among these distances:
794 5 0.00
795 14 0.01
796 24 0.01
797 31 0.02
798 25 0.02
799 13 0.01
800 18 0.01
801 13 0.01
802 268 0.16
803 651 0.40
804 145 0.09
805 15 0.01
806 15 0.01
807 1 0.00
808 1 0.00
811 1 0.00
813 1 0.00
814 1 0.00
815 3 0.00
816 3 0.00
819 1 0.00
820 1 0.00
821 2 0.00
822 2 0.00
826 1 0.00
827 4 0.00
829 8 0.00
830 17 0.01
831 8 0.00
832 4 0.00
833 223 0.14
834 8 0.00
835 7 0.00
836 15 0.01
837 9 0.01
838 20 0.01
839 19 0.01
840 18 0.01
841 15 0.01
842 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (803 bp):
TTAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
AACTTTGACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTGAGA
AATTTTTCAAACATTCCATGCTCAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTATTTTTGT
AAACAAGTTTTGGTACTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
GACGAACTTCCGAACTTGTGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC
AAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTAGTTCCTAAAAGTATTCAAG
ATGATCCATTCTTTCGAGTAATTTTTCGAACATTCCATGCTTTGGAAATCGCATAATTTGGTCTA
AATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTG
GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTTTTC
TCTCTTGGTTCTTGGACGAACTTTCGATCTTTTGAAAAACTTACTAACGTGAGAATTGCTTCTCT
CTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAATTGTTTCTCTCTT
GGTTCTTGGACGAAAATCCGAACTTGTCAAAAACTTATTTACAAAAGAATTGTTTCTCTCTTGGT
TCTTGGACGAACATCCGAACTTG
Found at i:14415316 original size:62 final size:62
Alignment explanation
Indices: 14415219--14415407 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
14415209 TCCGTGAATT
* * **
14415219 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14415281 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
14415343 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14415405 AAA
1 AAA
14415408 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14415517 original size:340 final size:340
Alignment explanation
Indices: 14414879--14415622 Score: 1039
Period size: 340 Copynumber: 2.2 Consensus size: 340
14414869 TGATCTTTTG
* * * * *
14414879 AAAAACTTACTAACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
*
14414944 AACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAAC
* * * *
14415009 TTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTTA
131 TTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAACTTTTA
** * ** * *
14415074 CGATTTATTTTATAACTTCGGTTCCTGAAAGTATTTAAGATGATCCATTCTTTCGAGCAATTTTT
196 CGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCGAGAAATTTTT
* * * * *
14415139 CTAACATTCCATGCTAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTCTTTTTGCAAACAAGT
261 CGAACATTCCATGCTAGGAAAATCGCATTATCTGGTCTAAATAGTCTGTCATTTTGCAAACAAGT
*
14415204 TTTGGTCCGTGAATT
326 TTTGGTCCGTAAATT
** *
14415219 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
** ** *
14415284 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTGAAAAAC
66 AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAAC
*
14415349 TTATTTA-AGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAACTTTT
131 TTATTTACA-AAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAACTTTT
* *
14415413 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAATTTT
195 ACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCGAGAAATTTT
* ** *
14415478 TCGAACGTTCCATGCTTTGAAAATC-C-TGTCATCTGGTCTAAATAGTCTGTCATTTTGTAAACA
260 TCGAACATTCCATGCTAGGAAAATCGCAT-T-ATCTGGTCTAAATAGTCTGTCATTTTGCAAACA
**
14415541 AGTTTTGGTCTTTAAATT
323 AGTTTTGGTCCGTAAATT
* *
14415559 AAAAACTTATTTACGTGAGAATT-GTAC-CTCCTTAGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCT-CTTGGTTCTTGGACAAACTTTCGAACTTGTCAA
14415622 A
65 A
14415623 CTTTCACGAG
Statistics
Matches: 355, Mismatches: 45, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
338 3 0.01
339 36 0.10
340 316 0.89
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAAC
TTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAACTTTTA
CGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTAGGAAAATCGCATTATCTGGTCTAAATAGTCTGTCATTTTGCAAACAAGT
TTTGGTCCGTAAATT
Found at i:14415756 original size:215 final size:216
Alignment explanation
Indices: 14415343--14415817 Score: 602
Period size: 215 Copynumber: 2.2 Consensus size: 216
14415333 CGAACTTGTG
* * * *
14415343 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTTGCCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGCCAAA
* * * *
14415408 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACATAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * * * * *
14415473 ATTTTTCGAACGTTCCATGCTTTGAAAATCCTGTCATCTGGTCTAAATAGTCTGTCATTTTGTAA
131 ATTTTACAAACATTCCATGCTTCGAAAATCCTATCATCTGGTCAAAATAGTCTGTCATTTTGTAA
**
14415538 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGAACTGTT-AATT
** * * *
14415559 AAAAACTTATTTACGTGAGAATTGTACCTC-CTTAGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGCCAAA
** **
14415623 CTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGTATTCAAGATTATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTTATAACATAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* *
14415687 AAA-TTTACAAACATTCCATGC-TCGAGAAATCAC-ATCATTTGGTCAAAATAGTTTGTCATTTT
129 AAATTTTACAAACATTCCATGCTTCGA-AAATC-CTATCATCTGGTCAAAATAGTCTGTCATTTT
14415749 GTAAACAAGTTTTGAACTGTTAATT
192 GTAAACAAGTTTTGAACTGTTAATT
* *
14415774 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
14415818 TGAAATTCCA
Statistics
Matches: 222, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
214 4 0.02
215 173 0.78
216 45 0.20
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCGAACTTGCCAAA
CTTTCACGAGTTCTTTTATAACATAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTTACAAACATTCCATGCTTCGAAAATCCTATCATCTGGTCAAAATAGTCTGTCATTTTGTAA
ACAAGTTTTGAACTGTTAATT
Found at i:14415875 original size:62 final size:62
Alignment explanation
Indices: 14415777--14415962 Score: 320
Period size: 62 Copynumber: 3.0 Consensus size: 62
14415767 GTTAATTAAT
* * * *
14415777 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAA-ATTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TCCGAACTTGTCAAA
14415839 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14415901 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14415963 CTTTTACGAT
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
62 118 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14416091 original size:555 final size:554
Alignment explanation
Indices: 14415003--14416170 Score: 1662
Period size: 555 Copynumber: 2.1 Consensus size: 554
14414993 CGAACTTGTC
*** *
14415003 AAAAACTTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTT-GTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14415068 CTTTTACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTTAAGATGATCCATTCTTTCGAGCA
64 CTTTCACGAGTTATTTTATAACATAGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * * * * * *
14415133 ATTTTTCTAACATTCCATGCTAGGGAAATCGCATTATTTGGTCTAAATAGTTTGTCTTTTTGCAA
129 AATTTACAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGCAA
** * *
14415198 ACAAGTTTTGGTCCGTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
194 ACAAGTTTTGAACCGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
* *** *
14415263 TGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGA
259 TGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
14415328 ACTTCCGAACTTGTGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACA
324 ACATCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACA
14415393 TCCGAACTTGCCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAAT
389 TCCGAACTTGCCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAAT
* * ** **
14415458 CCATTCCTTCTAGAAATTTTTCGAACGTTCCATGCTTTGAAAATCCTGTCATCTGGTCTAAATAG
454 CCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCAGAAAATCCTGAAATCTGGTCTAAATAG
*
14415523 TCTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
519 TCTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
* *
14415559 AAAAACTTATTTACGTGAGAATTGTAC-CTCCTTAGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCT-CTT-GTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
14415623 CTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGTATTCAAGATTATCCATTCCTTT-GAGC
64 CTTTCACGAGTTATTTTATAACATAGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC
* *
14415687 AAATTTACAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
128 AAATTTACAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGCA
* * * *
14415752 AACAAGTTTTGAACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
193 AACAAGTTTTGAACCGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGG
14415817 ATGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
258 ATGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * *
14415882 AACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
323 AACATCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAAC
* * ** **
14415947 ATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTGCTGAAAGTATTCAAGATGA
388 ATCCGAACTTGCCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAA
* *
14416012 TCCATTCTTTCGA-ATAATTTTTCGAACATTCCATGCTCAGGAAATCGCAT-AAAT-TGGTCTAA
453 TCCATTCCTTCGAGA-AATTTTTCGAACATTCCATGCTCAGAAAATC-C-TGAAATCTGGTCTAA
* * *
14416074 ATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATT
515 ATAGTCTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
14416114 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAAC
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTG-TTCTTGGACGAACTTTCGAAC
14416171 ATTTGAAAAA
Statistics
Matches: 540, Mismatches: 64, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
554 3 0.01
555 480 0.89
556 54 0.10
557 3 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGTTCTTGGACGAACTTTCGAACTTGTCAAACT
TTCACGAGTTATTTTATAACATAGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAA
TTTACAAACATTCCATGCTAGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGCAAAC
AAGTTTTGAACCGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGATG
AAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
ATCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATC
CGAACTTGCCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCC
ATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCAGAAAATCCTGAAATCTGGTCTAAATAGTC
TGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:14416213 original size:340 final size:339
Alignment explanation
Indices: 14415559--14416517 Score: 1222
Period size: 340 Copynumber: 2.8 Consensus size: 339
14415549 TCTTTAAATT
** * * * *
14415559 AAAAACTTATTTACGTGAGAATTGTACCTC-CTTAGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
14415623 CTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGTATTCAAGATTATCCATTCCTTT-GAGC
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATT-CTTTCGA--
* *
14415687 AAA-TTTACAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
128 AAATTTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
14415751 AAACAAGTTTT-GAACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTT-AGTTCT
193 AAACAAGTTTTGGTACT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGA-TTCT
* * * *
14415814 TGGATGAAATTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
256 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14415879 ACGAACATCCGAA-CTTGTC
321 ACAAACATCC-AATCTTGTC
14415898 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14415963 CTTTTACGATTTCTTTTATAACTTCGGTTGCTGAAAGTATTCAAGATGATCCATTCTTTCGAATA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCGAA-A
* * * * *
14416028 ATTTTTCGAACATTCCATGCTC-AGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTA
130 ATTTTTCAAACATTCCATGCTCGA-GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* *
14416092 AACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGG
194 AACAAGTTTTGGTACTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGG
*
14416157 ACGAACTTTCGAACATT-TGAAAAACTTATTTACGTGA-ATATTGTTTCTCTCTTGGTTCTTGGA
259 ACGAACTTTCGAAC-TTGTCAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTGGA
*
14416220 CAAACTTCCAATCTTGTC
322 CAAACATCCAATCTTGTC
* * *
14416238 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
14416303 CTTTTAGGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGATAATCCATT-TCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCT-TTCGA-A
* * * * * *
14416367 AATTTTTCAAACATTTCACGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTATCATTTTGTA
129 AATTTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
** * *
14416432 AACAAGTTTTGGTTTTTAAATTAAAAACTTATTTACATGAGAATT-GTATCTC-CTTGGTTCTTG
194 AACAAGTTTTGGTACTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTG
*
14416495 GACGAACTTTCGAACTTGCCAAA
258 GACGAACTTTCGAACTTGTCAAA
14416518 CTTTCACGAG
Statistics
Matches: 544, Mismatches: 61, Indels: 30
0.86 0.10 0.05
Matches are distributed among these distances:
338 3 0.01
339 69 0.13
340 464 0.85
341 8 0.01
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCGAAAA
TTTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTACTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGAC
GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAA
CATCCAATCTTGTC
Found at i:14416216 original size:62 final size:61
Alignment explanation
Indices: 14416114--14416302 Score: 222
Period size: 62 Copynumber: 3.0 Consensus size: 61
14416104 TCCTTGAATT
* * * *
14416114 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACTTTCGAA-CATT-TG
1 AAAAACTTATTTACGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAATC-TTGTC
*
14416176 AAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCAATCTTGTC
1 AAAAACTTATTTACGTGAA-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTC
* * * *
14416238 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAA-CTTGTC
1 AAAAACTTATTTACGTGA-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AATCTTGTC
14416300 AAA
1 AAA
14416303 CTTTTAGGAT
Statistics
Matches: 112, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
61 8 0.07
62 101 0.90
63 3 0.03
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTC
Found at i:14416490 original size:555 final size:552
Alignment explanation
Indices: 14415898--14417412 Score: 2202
Period size: 555 Copynumber: 2.7 Consensus size: 552
14415888 CGAACTTGTC
* * *
14415898 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14415963 CTTTTACGATTTCTTTTATAACTTCGGTTGCTGAAAGTATTCAAGATGATCCATT-CTTTCGAAT
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTT-GAA-
* * * * * *
14416027 AATTTTTCGAACATTCCATGCTC-AGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGT
128 AATTTTTCAAACATTCCATGCTCGA-GAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
14416091 AAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTT
192 AAACAAGTTTTGG-ACTGTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTG-TTCTT
*
14416155 GGACGAACTTTCGAACATT-TGAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGG
255 GGACGAACTTTCGAAC-TTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGG
* *
14416219 ACAAACTTCCAATCTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTAGACG
319 ACGAACTTCCAA-CTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACG
14416284 AACATCCGAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCAGTTCCAAAA-AGCATTCAAG
383 AACATCCGAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCAGTT-CAAAACAGCATTCAAG
** * *
14416348 ATAATCCATTTCTTCTAGAAATTTTTCAAACATTTCACGCTCGAAAAATCCCTTCATTTGGTCTA
447 ATAATCCATGCCTTCTAGAAATTTTTCAAACATTCCACGCTCGAAAAATCCCGTCATTTGGTCTA
*
14416413 AATAGTTTATCATTTTGTAA-ACAAGTTTTGGTTTTTAAATT
512 AATAGTTTATCATTTTGTAAGA-AAGTTTTGGTCTTTAAATT
* *
14416454 AAAAACTTATTTACATGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGCCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * *
14416519 TTTCACGAGTTCTTTTATAACTAAGGTTCCTTAAAGTATTCAAGACGATCCATTGCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGA--AA
*
14416584 A-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
129 ATTTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
14416648 ACAAGTTTTGGACTGTTAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
194 ACAAGTTTTGGACTGTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTT-GTTCTTGGA
* * * * *
14416713 TGAACTTTCGAGCTTGTCAAAGACTTATTTACGTGAGTATTGTTTCTCTCTTTGTTCTTGGACGA
258 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACGA
* *
14416778 ACTTCCGAACTTGTCAAAAAGTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACA
323 ACTTCC-AACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
* * ** * *
14416843 TCTGAACTTGTCAAACTTTTATGATTTCTTTTATAACTTTGGTTCAAAACTGTATTCAAGATAAT
387 TCCGAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCAGTTCAAAACAGCATTCAAGATAAT
* ** *
14416908 CCATGCCTTCTAGAAATTTTTCATACATTCCGTGGTCGAAAAATCCCGTCATTTGGTCTAAATAG
452 CCATGCCTTCTAGAAATTTTTCAAACATTCCACGCTCGAAAAATCCCGTCATTTGGTCTAAATAG
* *
14416973 TTTGTCATTTTGTAAGAAATTTTTGGTCTTTAAATT
517 TTTATCATTTTGTAAGAAAGTTTTGGTCTTTAAATT
*
14417009 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
*
14417074 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATTATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGA--AA
* * *
14417139 ATTTTT-AAACATTCCATGCTTGAGAAATCACATCATTTTGTCAAAAAAGTTTGTCATTTTGTAA
129 ATTTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* * *
14417203 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGTCTCTTGGA
194 ACAAGTTTTGGACTGTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGT-TCTTGGA
* *
14417268 CGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGA-ATTGTTTCTCTCTTGGTTCTTAGACG
258 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGA-ATATTGTTTCTCTCTTGGTTCTTGGACG
* * * * *
14417332 AACTTTCAAACCTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTGGGACGAAC
322 AAC-TTCCAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
14417397 ATCCAAACTTGTCAAA
386 ATCCGAACTTGTCAAA
14417413 ACTTATTTAC
Statistics
Matches: 865, Mismatches: 80, Indels: 29
0.89 0.08 0.03
Matches are distributed among these distances:
554 11 0.01
555 808 0.93
556 45 0.05
557 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (552 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGAAAAT
TTTTCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGACTGTTAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGTTCTTGGACGA
ACTTTCGAACTTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG
AACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCAGTTCAAAACAGCATTCAAGATAATCCAT
GCCTTCTAGAAATTTTTCAAACATTCCACGCTCGAAAAATCCCGTCATTTGGTCTAAATAGTTTA
TCATTTTGTAAGAAAGTTTTGGTCTTTAAATT
Found at i:14416620 original size:895 final size:892
Alignment explanation
Indices: 14414879--14417072 Score: 3343
Period size: 895 Copynumber: 2.5 Consensus size: 892
14414869 TGATCTTTTG
* *
14414879 AAAAACTTACTAACGTGAGAATTGCTTCTCTCTTGGTTCTTGGA-CAAACTTCCAAACTTGTCAA
1 AAAAACTTACTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGATGAAA-TTCCAAACTTGTCAA
* * *
14414943 AAACTTATTTATGTGAAAATTGTTTCTCTCTTGGTTCTTGGACGAAAATCCGAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
* *
14415008 CTTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAACTTTT
130 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * *
14415073 ACGATTTATTTTATAACTTCGGTTCCTGAAAGTATTTAAGATGATCCATTCTTTCGAGCAATTTT
195 ACGATTTCTTTTATAACTTCGGTT-CTGAAAGTATTCAAGATGATCCATTCTTTCGA-AAATTTT
* *
14415138 TCTAACATTCCATGCT-AGGGAAATCGCATTATTTGGTCTAAATAGTTTGTCTTTTTGCAAACAA
258 TC-AACATTCCATGCTCA-GGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
* *
14415202 GTTTTGGTCCGTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAA
321 GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAA
* * *
14415267 CTTTTGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTT
386 CTTTCGAACTTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACAAACTT
*
14415332 CCGAACTTGTGAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCG
451 CCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCG
* *
14415397 AACTTGCCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCAT
516 AACTTGCCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGACAATCCAT
* * * * *
14415462 TCCTTCTAGAAATTTTTCGAACGTTCCATGCTTTGAAAATCCTGTCATCTGGTCTAAATAGTCTG
581 TCCTTCTAGAAATTTTTCAAACATTCCACGCTTCGAAAATCCTGTCATCTGGTCTAAATAGTCTA
*
14415527 TCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTACCTCCTT
646 TCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTACCTCCTT
*
14415592 AGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACATAGGTTCCTTA
711 AGTTCTTGGACAAACTTTCGAACTTGCCAAACTTTCACGAGTTCTTTTATAACATAGGTTCCTTA
**
14415657 AAGTATTCAAGATTATCCATTCCTTTGAGCAAATTTACAAACATTCCATGCTCGAGAAATCACAT
776 AAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTACAAACATTCCATGCTCGAGAAATCACAT
14415722 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGAACTGTTAATT
841 CATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGAACTGTTAATT
* * * *
14415774 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGATGAAATTCCAAACTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAA
14415839 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
* *
14415904 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
14415969 CGATTTCTTTTATAACTTCGGTTGCTGAAAGTATTCAAGATGATCCATTCTTTCGAATAATTTTT
196 CGATTTCTTTTATAACTTCGGTT-CTGAAAGTATTCAAGATGATCCATTCTTTCGAA-AATTTTT
*
14416034 CGAACATTCCATGCTCAGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
259 C-AACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
*
14416099 TTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACGAACT
323 TTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACT
*
14416164 TTCGAACATT-TGAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACAAACTTC
388 TTCGAAC-TTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACAAACTTC
*
14416228 C-AATCTTGTCAAAAACTTATTTACA-TAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCC
452 CGAA-CTTGTCAAAAACTTATTTA-AGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCC
* * *
14416291 GAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGATAATCCA
515 GAACTTGCCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGACAATCCA
* * *
14416356 TTTCTTCTAGAAATTTTTCAAACATTTCACGC-TCGAAAAATCCCT-TCATTTGGTCTAAATAGT
580 TTCCTTCTAGAAATTTTTCAAACATTCCACGCTTCG-AAAAT-CCTGTCATCTGGTCTAAATAGT
* * *
14416419 TTATCATTTTGTAAACAAGTTTTGGTTTTTAAATTAAAAACTTATTTACATGAGAATTGTATCTC
643 CTATCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTACCTC
* *
14416484 CTTGGTTCTTGGACGAACTTTCGAACTTGCCAAACTTTCACGAGTTCTTTTATAAC-TAAGGTTC
708 CTTAGTTCTTGGACAAACTTTCGAACTTGCCAAACTTTCACGAGTTCTTTTATAACAT-AGGTTC
* *
14416548 CTTAAAGTATTCAAGACGATCCATTGCTTTGAGCAAATTTCCAAACATTCCATGCTCGAGAAATC
772 CTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAATTTACAAACATTCCATGCTCGAGAAATC
*
14416613 ACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATT
837 ACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGAACTGTTAATT
* * * * * * *
14416669 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTTGTCAAA
1 AAAAACTTACTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAA
* * * * *
14416734 GACTTATTTACGTGAGTATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAAAAG
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
* *
14416799 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAACTTTTA
131 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * * * * *
14416864 TGATTTCTTTTATAACTTTGGTTC-AAAACTGTATTCAAGATAATCCATGCCTTCTAGAAATTTT
196 CGATTTCTTTTATAACTTCGGTTCTGAAA--GTATTCAAGATGATCCATTCTTTCGA-AAATTTT
* * * * * * *
14416928 TCATACATTCCGTGGTC-GAAAAATCCCGTCATTTGGTCTAAATAGTTTGTCATTTTGTAAGA-A
258 TCA-ACATTCCATGCTCAG-GAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA-ACA
* * * *
14416991 ATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACA
320 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACG
14417054 AACTTTCGAACTTGTCAAA
384 AACTTTCGAACTTGTCAAA
14417073 CTTTCACGAG
Statistics
Matches: 1188, Mismatches: 94, Indels: 35
0.90 0.07 0.03
Matches are distributed among these distances:
893 5 0.00
894 38 0.03
895 1133 0.95
896 12 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (892 bp):
AAAAACTTACTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCTGAAAGTATTCAAGATGATCCATTCTTTCGAAAATTTTTCA
ACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
GGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC
GAACTTGTCAAAAACTTATTTACGTGAATATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAA
CTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTAGACAAACATCCGAACTT
GCCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGACAATCCATTCCTT
CTAGAAATTTTTCAAACATTCCACGCTTCGAAAATCCTGTCATCTGGTCTAAATAGTCTATCATT
TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTACCTCCTTAGTTC
TTGGACAAACTTTCGAACTTGCCAAACTTTCACGAGTTCTTTTATAACATAGGTTCCTTAAAGTA
TTCAAGACGATCCATTCCTTTGAGCAAATTTACAAACATTCCATGCTCGAGAAATCACATCATTT
GGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGAACTGTTAATT
Found at i:14416622 original size:215 final size:215
Alignment explanation
Indices: 14416238--14416733 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 215
14416228 CAATCTTGTC
* * * *
14416238 AAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
14416303 CTTTTAGGATTTCTTTTATAACTTCAGTTCCAAAAAGCATTCAAGATAATCCATTTCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTAAGTTCCAAAAAGCATTCAAGACAATCCATTGCTTCTAGAA
* * * * *
14416368 ATTTTTCAAACATTTCACGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTTTATCATTTTGTAA
130 ATTTTCCAAACATTCCACGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTATCATTTTGTAA
* *
14416433 ACAAGTTTTGG-TTTTTAAATT
195 ACAAGTTTTGGACTGTT-AATT
*
14416454 AAAAACTTATTTACATGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGCCAAA
1 AAAAACTTATTTACATGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
14416518 CTTTCACGAGTTCTTTTATAAC-TAAGGTTCCTTAAAGTATTCAAGACGATCCATTGCTT-TGAG
65 CTTTCACGAGTTCTTTTATAACTTAA-GTTCCAAAAAGCATTCAAGACAATCCATTGCTTCT-AG
* * *
14416581 CAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
128 -AAATTTTCCAAACATTCCACGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTATCATTTTG
14416645 TAAACAAGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
** * *
14416669 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTTGTCAAA
1 AAAAACTTATTTACATGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14416734 GACTTATTTA
Statistics
Matches: 243, Mismatches: 30, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
214 3 0.01
215 174 0.72
216 66 0.27
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACATGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAAGTTCCAAAAAGCATTCAAGACAATCCATTGCTTCTAGAAA
TTTTCCAAACATTCCACGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTATCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:14416770 original size:62 final size:62
Alignment explanation
Indices: 14416669--14416857 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14416659 ACTGTTAATT
* * * *
14416669 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
* * * *
14416731 AAAGACTTATTTACGTGAGTATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
* * * * *
14416793 AAAAAGTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
14416855 AAA
1 AAA
14416858 CTTTTATGAT
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 110 1.00
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC
Found at i:14417192 original size:215 final size:215
Alignment explanation
Indices: 14416793--14417288 Score: 594
Period size: 215 Copynumber: 2.3 Consensus size: 215
14416783 CGAACTTGTC
* * * * *
14416793 AAAAAGTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-ATCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * *
14416857 ACTTTTATGATTTCTTTTATAACTTTGGTTCAAAACTGTATTCAAGATAATCCATGCCTTCTAGA
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCAAAAC-GTATTCAAGATAATCCATGCCTTCTAGA
* * * * * * *
14416922 AATTTTTCATACATTCCGTGGTCGAAAAATCCCGTCATTTGGTCTAAATAGTTTGTCATTTTGTA
129 AATTTTTCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAAAAGTTTGTCATTTTGTA
* *
14416987 AGA-AATTTTTGGTCT-TTAAATT
194 A-ACAAGTTTTGGACTGTT-AATT
* *
14417009 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
14417073 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-GTATTCAAGATTATCCATTCCTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTAGGTT-C-AAAACGTATTCAAGATAATCCATGCCTTCT-AG
* * *
14417136 CAAATTTTT-AAACATTCCATGCTTGAGAAATCACATCATTTTGTCAAAAAAGTTTGTCATTTTG
128 -AAATTTTTCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAAAAGTTTGTCATTTTG
14417200 TAAACAAGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
* * *
14417224 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACGAACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACTTTCGAACTTGTCAA
14417288 A
65 A
14417289 AACTTATTTA
Statistics
Matches: 240, Mismatches: 31, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
214 2 0.01
215 167 0.70
216 68 0.28
217 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.40
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCAAAACGTATTCAAGATAATCCATGCCTTCTAGAAA
TTTTTCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAAAAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:14417212 original size:21 final size:21
Alignment explanation
Indices: 14417171--14417210 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
14417161 AGAAATCACA
14417171 TCATTTTGTCAAAAAAGTTTG
1 TCATTTTGTCAAAAAAGTTTG
*
14417192 TCATTTTGT-AAACAAGTTT
1 TCATTTTGTCAAAAAAGTTT
14417211 TGGACTGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (21 bp):
TCATTTTGTCAAAAAAGTTTG
Found at i:14417459 original size:61 final size:62
Alignment explanation
Indices: 14417227--14417474 Score: 347
Period size: 62 Copynumber: 4.0 Consensus size: 62
14417217 GTTAATTAAT
* * * *
14417227 AACTTAGTTACGTGAGAATTGTTTCTCTCTT-GTCTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGT-TCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
14417289 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCAAACCTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14417351 AACTTATTTACGTAAGAATTGTTTCTCTCTTGATTCTGGGACGAACATCCAAACTTGTC-AA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
** *
14417412 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14417474 A
1 A
14417475 TTTCACGATT
Statistics
Matches: 167, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
61 56 0.34
62 109 0.65
63 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14417796 original size:216 final size:216
Alignment explanation
Indices: 14417410--14418118 Score: 768
Period size: 216 Copynumber: 3.3 Consensus size: 216
14417400 CAAACTTGTC
* * *
14417410 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
* * * * * *
14417475 TTTCACGATTTGTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
66 TTTCACGATTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAAA
* * * * *
14417540 TTTTTCGAACATTCCATGCTTGGGAAATCACATAATTTGGTCCAAATAGTTTGTCTTTTTGTAAA
131 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* *
14417605 CAAGTTTCGGTCCTTGAATTA
196 CAAGTTTTGGTCCTTAAATTA
* * * * * *
14417626 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTCGATGAACATCCGAATTTGTTAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
* ** * *
14417691 TTTTACGATTTCTTTTATTGCTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAA
66 TTTCACGATTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAAA
* * * * * *
14417756 TTTTTTGAACACTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAA
131 TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
*
14417821 CAAGTTTTGGTCTTTAAATTA
196 CAAGTTTTGGTCCTTAAATTA
** * * * * * *
14417842 AAAACTTATTTACGTGAG--TTGCATCTC-CTTGGTTCTTGGACGAACTTTCAAACCTGTCACAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
* * * * *
14417904 TTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATTCATTTCTT-TGAGC
66 TTTCACGATTTCTTTTATAACTTCA-GTTCCTAAAAGTATTCAAGATGATCCATTCCTTCT-AG-
* * * * * *
14417967 AAA-TTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGT
128 AAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
* *
14418031 AAACAAGTTTTGG-ACTGTTAATTA
193 AAACAAGTTTTGGTCCT-TAAATTA
* * * * * *
14418055 ATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTCCTTAGACGAAC-TCCCGAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACAT-CCGAACTTGTCAAA
14418119 AACTTATTTA
Statistics
Matches: 404, Mismatches: 81, Indels: 16
0.81 0.16 0.03
Matches are distributed among these distances:
212 3 0.01
213 157 0.39
214 10 0.02
215 8 0.02
216 226 0.56
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
TTTCACGATTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATGATCCATTCCTTCTAGAAA
TTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCCTTAAATTA
Found at i:14417857 original size:617 final size:613
Alignment explanation
Indices: 14416669--14417888 Score: 1571
Period size: 617 Copynumber: 2.0 Consensus size: 613
14416659 ACTGTTAATT
* * * * * *
14416669 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAGCTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCAAACCTGTCAAA
* * * * * * *
14416734 GACTTATTTACGTGAGTATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAAAAG
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTGGGACGAACATCCAAACTTGTCAAAAAC
** * * *
14416799 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAACTTTTA
131 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTCA
* * *
14416864 TGATTTCTTTTATAACTTTGGTTCAAAACTGTATTCAAGATAATCCATGCCTTCTAGAAATTTTT
196 CGATTTCTTTTATAACTTCGGTTCAAAAC-GTATTCAAGATAATCCATGCCTTCGAGAAATTTTT
* * * * * * *
14416929 CATACATTCCGTGGTCGAAAAATCCCGTCATTTGGTCTAAATAGTTTGTCATTTTGTAAGAAATT
260 CATACATTCCATGCTCGAAAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAGAAAGT
* * * * *
14416994 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTT
325 TTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGATTCTTCGACAAACAT
* ** *
14417059 TCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGATTATC
390 CCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATC
* * * *
14417124 CATTCCTTTGAGCAAATTTTTAAACATTCCATGCTTGAGAAATCACATCATTTTGTCAAAAAAGT
455 CATTCCTTTGAGCAAATTTTTAAACACTCCATGCTCGAAAAATCACATCATTTGGTCAAAAAAGT
* **
14417189 TTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTC
520 TTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAGTTACGTGAG--TTGCATCTC
14417254 TCTT-GTCTCTTGGACGAACTTCCGAACTTGTC
583 -CTTGGT-TCTTGGACGAACTTCCGAACTTGTC
*
14417286 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTTCAAACCTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCAAACCTGTCAAA
14417351 AACTTATTTACGTAAGAATTGTTTCTCTC-TTGATTCTGGGACGAACATCCAAACTTGTC-AAAA
66 AACTTATTTACGTAAGAATTGTTTCTCTCTTTG-TTCTGGGACGAACATCCAAACTTGTCAAAAA
*
14417414 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTC
130 CTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTC
* * * * * *
14417479 ACGATTTGTTTTATAACTTCGGTTCCTGAAA-GTATTCAAGATGATCCATTCTTTCGAGCAATTT
195 ACGATTTCTTTTATAACTTCGGTT-C-AAAACGTATTCAAGATAATCCATGCCTTCGAGAAATTT
* ** *
14417543 TTCGA-ACATTCCATGCTTGGGAAATCACATAATTTGGTCCAAATAGTTTGTCTTTTTGTAA-AC
258 TTC-ATACATTCCATGCTCGAAAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAGA-
* *
14417606 AAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGATTCTTCGAT
321 AAGTTTCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGATTCTTCGAC
* * * * * **
14417670 GAACATCCGAATTTGTTAAACTTTTACGATTTCTTTTATTGCTTCA-GTTCCAAAAAGTATTCAA
384 AAACATCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTT-AGGTTCCAAAAAGTATTCAA
* *
14417734 GATAATCCATTCCTTCT-AG-AAATTTTTTGAACACTCCATGCTCGAAAAATCCCATCATTTGGT
448 GATAATCCATTCCTT-TGAGCAAA-TTTTTAAACACTCCATGCTCGAAAAATCACATCATTTGGT
* ** * *
14417797 CTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCT-TTAAATTAAAAACTTATTTACGTGAGT
511 CAAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTT-AATTAAAAACTTAGTTACGTGAGT
14417861 TGCATCTCCTTGGTTCTTGGACGAACTT
575 TGCATCTCCTTGGTTCTTGGACGAACTT
14417889 TCAAACCTGT
Statistics
Matches: 519, Mismatches: 72, Indels: 27
0.84 0.12 0.04
Matches are distributed among these distances:
614 17 0.03
615 10 0.02
616 210 0.40
617 277 0.53
618 5 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (613 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTAGACGAACTTTCAAACCTGTCAAA
AACTTATTTACGTAAGAATTGTTTCTCTCTTTGTTCTGGGACGAACATCCAAACTTGTCAAAAAC
TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTCA
CGATTTCTTTTATAACTTCGGTTCAAAACGTATTCAAGATAATCCATGCCTTCGAGAAATTTTTC
ATACATTCCATGCTCGAAAAATCACATAATTTGGTCCAAATAGTTTGTCATTTTGTAAGAAAGTT
TCGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGATTCTTCGACAAACATC
CGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGATAATCC
ATTCCTTTGAGCAAATTTTTAAACACTCCATGCTCGAAAAATCACATCATTTGGTCAAAAAAGTT
TGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAAAACTTAGTTACGTGAGTTGCATCTCCTT
GGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14418103 original size:830 final size:832
Alignment explanation
Indices: 14416793--14418305 Score: 2419
Period size: 830 Copynumber: 1.8 Consensus size: 832
14416783 CGAACTTGTC
* * * * *
14416793 AAAAAGTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTCGATGAACATCCGAACTTGTCAAA
* ** *
14416858 CTTTTATGATTTCTTTTATAACTTTGGTTCAAAACTGTATTCAAGATAATCCATGCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCAAAACAGTATTCAAGATAATCCATGCCTTCTAGAA
* * * *
14416923 ATTTTTCATACATTCCGTGGTCGAAAAATCCCGTCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTTCATACACTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
14416988 GAAATTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGAC
196 GAAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAG-ATTGCATCTCCTTGGTTCTTGGAC
* *
14417053 AAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAG
260 AAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAG
** ** * * * **
14417118 ATTATCCATTCCTTTGAGCAAATTTTTAAACATTCCATGCTTGAGAAATCACATCATTTTGTCAA
325 ACGATCCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTCAA
14417183 AAAAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
390 AAAAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTG
* * *
14417248 TTTCTCTCTTGTCTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTT
455 TTTCTCTCTTGTCTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTT
* *
14417313 CTCTCTTGGTTCTTAG-ACGAACTTTCAAACCTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
520 CTCTCTTGGTTCTT-GTACGAACTTCCAAACCTGTCAAAAACTAATTTACGTAAGAATTGTTTCT
*
14417377 CTCTTGATTCTGGGACGAACATCCAAACTTG-TCAAAACTTATTTACGTAAGAATTGTTTCTCTC
584 CTCTTGATTCTGGGACGAACATCCAAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTC
14417441 TTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTCACGATTTGTTTTATAACTTCGGTTCCT
649 TTGGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTCACGATTTGTTTTATAACTTCGGTTCCT
14417506 GAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCAC
714 GAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCAC
14417571 ATAATTTGGTCCAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATT
779 ATAATTTGGTCCAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATT
* * * *
14417625 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTCGATGAACATCCGAATTTGTTAAA
1 AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTCGATGAACATCCGAACTTGTCAAA
** *
14417690 CTTTTACGATTTCTTTTATTGCTTCAGTTCCAAAA-AGTATTCAAGATAATCCATTCCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCAGTT-CAAAACAGTATTCAAGATAATCCATGCCTTCTAGA
* *
14417754 AATTTTTTGA-ACACTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGT
130 AA-TTTTTCATACACTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGT
14417818 AA-ACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAG-TTGCATCTCCTTGGTTCTTGG
194 AAGA-AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGATTGCATCTCCTTGGTTCTTGG
* *
14417881 ACGAACTTTCAAACCTGTCACACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCA
258 ACAAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCA
* * *
14417946 AGACGATTCATTTCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTC
323 AGACGATCCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTC
*
14418011 AAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
388 AAAAAAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAAT
14418076 TGTTTCTCTCTTAGTC-CTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTACGTGAGAATTG
453 TGTTTCTCTCTT-GTCTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTACGTGAGAATTG
* * *
14418140 CTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGTGAGAATTGTTT
517 CTTCTCTCTTGGTTCTTGTACGAACTTCCAAACCTGTCAAAAACTAATTTACGTAAGAATTGTTT
* * * *
14418205 CTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAAAACTTATTTATGTAAGAATTGTTTCTC
582 CTCTCTTGATTCTGGGACGAACATCCAAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTC
* *
14418270 TCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAA
647 TCTTGGTTCTTGGAAAAACATCCGAACTTGTCAAAA
14418306 ACTTATTTAC
Statistics
Matches: 619, Mismatches: 56, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
829 1 0.00
830 343 0.55
831 67 0.11
832 197 0.32
833 11 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (832 bp):
AAAAACTTATTTACATAAGAATTGGTTCTCTCTTGATTCTTCGATGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCAGTTCAAAACAGTATTCAAGATAATCCATGCCTTCTAGAA
ATTTTTCATACACTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
GAAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGATTGCATCTCCTTGGTTCTTGGACA
AACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGA
CGATCCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTCAAA
AAAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGT
TTCTCTCTTGTCTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTTC
TCTCTTGGTTCTTGTACGAACTTCCAAACCTGTCAAAAACTAATTTACGTAAGAATTGTTTCTCT
CTTGATTCTGGGACGAACATCCAAACTTGTTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT
GGTTCTTGGAAAAACATCCGAACTTGTCAAAATTTCACGATTTGTTTTATAACTTCGGTTCCTGA
AAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCACAT
AATTTGGTCCAAATAGTTTGTCTTTTTGTAAACAAGTTTCGGTCCTTGAATT
Found at i:14418165 original size:62 final size:60
Alignment explanation
Indices: 14418057--14418366 Score: 395
Period size: 62 Copynumber: 5.0 Consensus size: 60
14418047 GTTAATTAAT
* * *
14418057 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTCCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACT-CCGAACTTGTCAAA
* * *
14418119 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-ACGAAC-TCCGAACTTGTCAAA
* *
14418181 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAAC-TCCGAACTTGTCAAA
* * * *
14418243 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAAC-TCCGAACTTGTCAAA
* * *
14418305 AACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTAGACGAACACCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAAC-TCCGAACTTGTCAAA
14418367 CTTTTACGAT
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
61 1 0.00
62 218 0.99
63 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTCCGAACTTGTCAAA
Found at i:14418299 original size:124 final size:124
Alignment explanation
Indices: 14418064--14418366 Score: 437
Period size: 124 Copynumber: 2.4 Consensus size: 124
14418054 AATAACTTAG
* *
14418064 TTACGTGAGAATTGTTTCTCTCTTAGTCCTTAGACGAAC-TCCCGAACTTGTCAAAAACTTATTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACAT-CCGAACTTGTCAAAAACTTATTT
* * ** *
14418128 ACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAAT
65 ACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTAAT
* *
14418188 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAACTTATTTA
* * ** *
14418253 TGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAACTTAT
66 CGTAAGAATTGCTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTAAT
* * *
14418312 TTACGTAAGAATTATTTCTCTCTTGGTTCTTAGACGAACACCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
14418367 CTTTTACGAT
Statistics
Matches: 159, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
124 158 0.99
125 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (124 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAACTTATTTA
CGTAAGAATTGCTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAAAACTAAT
Found at i:14418683 original size:62 final size:61
Alignment explanation
Indices: 14418518--14418706 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 61
14418508 TCCTTGAATT
* * *
14418518 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGAACTTGTC
* * * * *
14418580 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCG-AACTTGTC
* * * *
14418642 AAAAACTTTTTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTC-GAACTTGTC
14418704 AAA
1 AAA
14418707 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
61 4 0.04
62 105 0.95
63 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGAACTTGTC
Found at i:14418815 original size:340 final size:340
Alignment explanation
Indices: 14418178--14418921 Score: 1073
Period size: 340 Copynumber: 2.2 Consensus size: 340
14418168 CAAACTTGTC
* * * * *
14418178 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14418243 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAAC
66 AACTTATTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
*
14418308 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTAGACGAACACCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTACTTCTCTCTTGGTTCTTAGACGAACACCCGAACTTGTCAAACTTTTA
** * * * *
14418373 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTT
196 CGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTT
* ** * * *
14418438 CGAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGT
261 CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14418503 TTTGGTCCTTGAATT
326 TTTGGTCCTTAAATT
** *
14418518 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14418583 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAAC-TTCGAAACTTGTCAAAAA
66 AACTTATTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCG-AACTTGTCAAAAA
* * * *
14418647 CTTTTTTACGTAAGAATTGCTTCTCTCTTGGTTCTT-GTACGAACATCTGAACTTGTCAAACTTT
130 CTTATTTACGTAAGAATTACTTCTCTCTTGGTTCTTAG-ACGAACACCCGAACTTGTCAAACTTT
** *
14418711 TACGATTTCTTTTGTAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTT
194 TACGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTT
* *
14418776 TTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
259 TTCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
14418841 GTTTTGGTCTTTAAATT
324 GTTTTGGTCCTTAAATT
* *
14418858 AAAACCTTATTTACGTGAGAATT-GTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14418921 A
65 A
14418922 CTTTCACGAG
Statistics
Matches: 358, Mismatches: 43, Indels: 7
0.88 0.11 0.02
Matches are distributed among these distances:
339 36 0.10
340 322 0.90
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTATGTAAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTACTTCTCTCTTGGTTCTTAGACGAACACCCGAACTTGTCAAACTTTTA
CGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14419050 original size:215 final size:216
Alignment explanation
Indices: 14418642--14419062 Score: 573
Period size: 215 Copynumber: 2.0 Consensus size: 216
14418632 GAAACTTGTC
* * *
14418642 AAAAACTTTTTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGCTTCTCTCATGGTTCTTGGACGAACATCTGAACTTGTCAAA
* * * * *
14418707 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
* * * *
14418772 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
14418837 ACAAGTTTTGGTCTTTAAATT
196 ACAAGTTTTGGTCTTTAAATT
* * *
14418858 AAAACCTTATTTACGTGAGAATTG-TATCTC-CATGGTTCTTGGACGAAC-TTTCGAACTTGTCA
1 AAAAACTTATTTACGTAAGAATTGCT-TCTCTCATGGTTCTTGGACGAACATCT-GAACTTGTCA
** * * *
14418920 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TGA
64 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-A
* *
14418984 GCAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTT
128 G-AAATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
14419048 GTAAACAAGTTTTGG
192 GTAAACAAGTTTTGG
14419063 AATGTTAATT
Statistics
Matches: 179, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
214 3 0.02
215 148 0.83
216 28 0.16
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTAAGAATTGCTTCTCTCATGGTTCTTGGACGAACATCTGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGTCTTTAAATT
Found at i:14419209 original size:62 final size:62
Alignment explanation
Indices: 14419087--14419318 Score: 339
Period size: 62 Copynumber: 3.8 Consensus size: 62
14419077 ACTTAGTTGT
* *
14419087 GTGAGAATTGTTCCTCTCTTGGTTCTT-----AACATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* *
14419144 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14419206 GTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14419268 GTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14419319 CTTTTACAAT
Statistics
Matches: 156, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
57 26 0.17
62 130 0.83
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
Found at i:14419636 original size:382 final size:390
Alignment explanation
Indices: 14418858--14419638 Score: 933
Period size: 396 Copynumber: 2.0 Consensus size: 390
14418848 TCTTTAAATT
* * * * * * *
14418858 AAAACCTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
* * ** * *
14418923 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAA
66 TTTCACAAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
* * * *
14418988 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
* ***
14419053 CAAGTTTTGGAATGTTAATTAATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTAACA
196 CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCTCTCTTGGTTCTTAACA
* *
14419118 TCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCC
261 -CCGAACTTGTC--AAA--TA-TTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGATAAACTTCC
* *
14419183 AAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATATCCGAA
320 AAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAA
14419248 CTTGTC
385 CTTGTC
* *
14419254 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTC-CATAGTTCTTGGACAAACATCCAAACTTGTCAAA
* * * * *
14419319 CTTTTACAATTTGTATTATAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATT-CTTTCGAGC
65 CTTTCACAAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTT-GAGC
*** * *
14419383 -AATTTTTGAACATTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTA
129 AAATTTCCAAACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTA
* * *
14419447 AATAAGTTTT-G-TTCGTTAAATTAAAAACTTATTTACATGAGAATTGGTT-CTCTCTTGGTTCT
194 AACAAGTTTTGGAAT-GTT-AATTAAAAACTTAGTTACATGAGAATT-GTTCCTCTCTTGGTTCT
** * *
14419509 T-GGA-CGAACTT-TC-GA-A-T-C-TGAGCATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCA
256 TAACACCGAACTTGTCAAATATTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCA
* * *
14419566 AACTTGTCAGAAATTTATTTAC-TCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAA
321 AACTTGTCAAAAACTTATTTACGT-AAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAA
14419630 CTTGTC
385 CTTGTC
14419636 AAA
1 AAA
14419639 CTTTTACGAT
Statistics
Matches: 332, Mismatches: 47, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
381 1 0.00
382 102 0.31
383 1 0.00
384 1 0.00
386 1 0.00
389 1 0.00
392 2 0.01
393 7 0.02
394 1 0.00
395 5 0.02
396 131 0.39
397 79 0.24
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (390 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
TTTCACAAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCTCTCTTGGTTCTTAACA
CCGAACTTGTCAAATATTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCAAACTT
GTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAACTTGTC
Found at i:14419888 original size:62 final size:62
Alignment explanation
Indices: 14419819--14419978 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
14419809 ATTTGGTAAT
* * * * *
14419819 CTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
* * * *
14419881 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAATTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
*
14419943 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14419979 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 88 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:14420322 original size:215 final size:215
Alignment explanation
Indices: 14419914--14420409 Score: 635
Period size: 215 Copynumber: 2.3 Consensus size: 215
14419904 CGAACTTGTC
* *
14419914 AAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * **
14419979 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * * * *
14420044 ATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTGTCGTTTTGTAA
130 ATTTTCCGAACATTCCATACTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCGTTTTGTAA
**
14420109 ACAAGTTTTGGCCT-TTAAATT
195 ACAAGTTTTGGAATGTT-AATT
* * *
14420130 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** * *
14420194 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TGAGT
65 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
14420258 AAA-TTTCC-AGACATTCCATACTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTT
128 AAATTTTCCGA-ACATTCCATACTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGTCGTTTT
14420320 GTAAACAAGTTTTGGAATGTTAATT
191 GTAAACAAGTTTTGGAATGTTAATT
* * **
14420345 AATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14420410 AACTTATTTA
Statistics
Matches: 242, Mismatches: 30, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
214 5 0.02
215 175 0.72
216 62 0.26
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCGAACATTCCATACTCGGAAAATCACATCATTTGGTCAAAATAGTTTGTCGTTTTGTAAA
CAAGTTTTGGAATGTTAATT
Found at i:14420451 original size:62 final size:62
Alignment explanation
Indices: 14420359--14420533 Score: 269
Period size: 62 Copynumber: 2.8 Consensus size: 62
14420349 ACTTAGTTGT
*
14420359 GTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
* * * *
14420421 GTGAGTATTGTTTCTCTCTTGATTCATGGACGAACTTCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
* * * *
14420483 GTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAA
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14420534 CTTTTATGAT
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 100 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (62 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
Found at i:14420662 original size:555 final size:553
Alignment explanation
Indices: 14419591--14421703 Score: 2240
Period size: 555 Copynumber: 3.7 Consensus size: 553
14419581 TATTTACTCA
* * * * *
14419591 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTT
1 AGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTT
* * * * * * * * *
14419656 ATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTG-GCCAATTTTTC-GAACATCC
65 ATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAG-CAAATTTCCAG-ACATTC
* * * * * * *
14419719 CATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAAACAAGTTTCGG-TCC
128 CATACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAT-G
* * * * * *
14419783 TTGAATTGAA-AACTTA-TTCACCTG-GCATTTGGTAATCTCTTGGTTCTTGGACAAACTTTCGA
192 TT-AATT-AATAACTTAGTT-ACGTGAG-AATTGTTACTCTCTTGGTTCTTGGACGAAC-TCCGA
* * * *
14419845 ACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACT
252 ACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACT
*
14419910 TGTCAAAAATTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
317 TGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
* * *
14419975 CAAACTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCT
382 CAAACTTTTACGATTTCTATTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCT
* * *
14420040 AGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCTTCATTTGGTCTAAATAGTTTGTCGTTTT
447 AGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTT
14420105 GTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTG
512 GTAAACAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTG
*
14420147 AGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
1 AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
*
14420212 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGTAAATTTCCAGACATTCCAT
66 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAGACATTCCAT
14420277 ACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAATGTTA
131 ACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG-ATGTTA
** *
14420342 ATTAATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
195 ATTAATAACTTAGTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTC
* *
14420407 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGATTCATGGACGAACTTCCGAACTTGTCAAA
259 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14420472 AACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAACTT
324 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
* *
14420537 TTATGATTTCTATTATAACTTCGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
389 TTACGATTTCTATTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
* *
14420602 TTTTGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTTTCATTTTGTAAACA
454 TTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA
*
14420667 AGTTTTGGTCTTTAAATTAAAAACTTATTTACGTG
519 AGTTTTGGCCTTTAAATTAAAAACTTATTTACGTG
* * *
14420702 AGAATTGTATCTCCTTGGTTCTTGGACAAACTTTTGAACTTGTTAAACTTTCACGAGTTCTTTTA
1 AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
* *
14420767 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAAT
66 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAGACATTCCAT
* * * *
14420832 GA-TCGAGAAATCACGTCATTAGGTTAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTT
131 -ACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGA-TGTT
* * *
14420896 AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGT
194 AATTAATAACTTAGTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGACGAACT-CCGAACTTGT
* * * * *
14420961 CAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAA
258 CAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* *
14421026 AAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
323 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--AAA
* * * *** * * * *
14421091 CTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACT-TGTCAA-ACTT
386 C-T-TTTAC----G-ATTTC-TAT-TATAACTTC-GGTTCCAA-A----AAGTAT-TCAAGA---
* * * * * * * * *
14421154 TTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTC-AAGATAATCCATTCCTTCTAGAAAT
432 -TA--A--TC------CA-TTC-CTTCTAGAAATTTTTCGAACAT--TCCA-TGC-TC-GGAAA-
* * * * * *** * * *
14421218 TTTTCGAACATTCCATGCTCGAAAA-A-TCCCATCATTTGGTCTATAA-ATAG-TTTGTCATTTT
478 -ATCCCATCATT---TGGTC-AAAATAGT-TTGTCATTT--TGTA-AACA-AGTTTTGGC--CTT
14421279 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTG
531 -T--A-AA----------TTAAA-----AACTTATTTACGTG
* *
14421321 AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTA
1 AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
* *
14421386 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAAT
66 TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAGACATTCCAT
* * *
14421451 GA-TCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTT
131 -ACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGA-TGTT
* * *
14421515 AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGT
194 AATTAATAACTTAGTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGACGAACT-CCGAACTTGT
* * * * * *
14421580 CAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAA
258 CAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
* * *
14421645 AAACTAATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
323 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
14421704 TAAAAACTTA
Statistics
Matches: 1353, Mismatches: 123, Indels: 99
0.86 0.08 0.06
Matches are distributed among these distances:
554 4 0.00
555 822 0.61
556 20 0.01
557 5 0.00
558 1 0.00
559 4 0.00
563 1 0.00
564 4 0.00
565 2 0.00
566 5 0.00
567 5 0.00
568 1 0.00
571 2 0.00
572 7 0.01
575 2 0.00
577 1 0.00
579 2 0.00
585 1 0.00
586 7 0.01
587 10 0.01
588 4 0.00
589 2 0.00
590 2 0.00
591 4 0.00
593 7 0.01
595 1 0.00
596 11 0.01
597 4 0.00
598 8 0.01
599 4 0.00
600 2 0.00
601 1 0.00
603 1 0.00
604 2 0.00
614 5 0.00
619 389 0.29
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (553 bp):
AGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTA
TAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAAATTTCCAGACATTCCAT
ACTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGATGTTAA
TTAATAACTTAGTTACGTGAGAATTGTTACTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAA
AAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTATTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
TCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGCCTTTAAATTAAAAACTTATTTACGTG
Found at i:14420874 original size:215 final size:216
Alignment explanation
Indices: 14420469--14420964 Score: 590
Period size: 215 Copynumber: 2.3 Consensus size: 216
14420459 CGAACTTGTC
* * * * *
14420469 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * *
14420534 CTTTTATGATTTCTATTATAACTTCGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTATTATAACTTAGGTTCTAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
*** * * * * *
14420599 ATTTTTTGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTTTCATTTTGTAA
131 ATTTTCCAAACATTCAATGATCGGAAAATCACATCATTAGGTCAAAATAGTTTGTCATTTTGTAA
*
14420664 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * ** *
14420685 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACAAACTTTTGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14420749 CTTTCACGAGTTCTTTTATAACTTAGGTTCCT-TAAAGTATTCAAGACGATTCATTCCTT-TGAG
66 CTTTCACGAGTTCTATTATAACTTAGGTT-CTAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
* *
14420812 CAAA-TTTCCAAACATTCAATGATC-GAGAAATCACGTCATTAGGTTAAAATAGTTTGTCATTTT
129 -AAATTTTCCAAACATTCAATGATCGGA-AAATCACATCATTAGGTCAAAATAGTTTGTCATTTT
14420875 GTAAACAAGTTTTGGACTGTTAATT
192 GTAAACAAGTTTTGGACTGTTAATT
* * * * *
14420900 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14420965 AACTTATTTA
Statistics
Matches: 234, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 170 0.73
216 61 0.26
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTATTATAACTTAGGTTCTAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCAATGATCGGAAAATCACATCATTAGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14421001 original size:62 final size:62
Alignment explanation
Indices: 14420903--14421150 Score: 365
Period size: 62 Copynumber: 4.0 Consensus size: 62
14420893 GTTAATTAAT
* * *
14420903 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAG-ACGAAC-TCCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTT-GTACGAACAT-CCGAACTTGTCAAA
* * *
14420965 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAA
* * *
14421027 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAA
* *
14421089 AACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAA
14421151 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
61 1 0.01
62 166 0.99
63 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAA
Found at i:14421144 original size:124 final size:124
Alignment explanation
Indices: 14420910--14421150 Score: 403
Period size: 124 Copynumber: 1.9 Consensus size: 124
14420900 AATAACTTAG
14420910 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTA
* * *
14420975 CGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAAT
66 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCAAACTTGTCAAAAACTAAT
* *
14421034 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-CCGAACTTGTCAAAAACTTATTT
1 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC-TCCCGAACTTGTCAAAAACTTATTT
**
14421098 ACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
65 ACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCAAACTTGTCAAA
14421151 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
124 108 0.99
125 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (124 bp):
TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTA
CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCAAACTTGTCAAAAACTAAT
Found at i:14421536 original size:619 final size:617
Alignment explanation
Indices: 14420359--14421769 Score: 2484
Period size: 619 Copynumber: 2.3 Consensus size: 617
14420349 ACTTAGTTGT
* * * * *
14420359 GTGAGAATTG-TTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGT
1 GTGAGAATTGCTT-CTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGT
* * * *
14420423 GAGTATTGTTTCTCTCTTGATTCATGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAG
65 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAG
* *
14420488 AATT-CTTTCTCTCTTGGTTCTTGAACGAACATCCGGACTTGTCAAACTTTTATGATTTCTATTA
130 AATTGC-TTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTATTA
* *
14420552 TAACTTCGGTTCTAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTGAACATTCCAT
194 TAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCAT
* *
14420617 GCTCGGAAAATCCCATCATTTGGTCAAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTTTAA
259 GCTCGAAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA
** * *
14420682 ATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTTGAACTTGTTA
324 ATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTCAAACCTGTCA
14420747 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAG
389 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAG
*
14420812 CAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTTAAAATAGTTTGTCATTTTGT
454 CAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGT
14420877 AAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTA
519 AAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTA
14420942 GACGAACTCCCGAACTTGTCAAAAACTTATTTAC
584 GACGAACTCCCGAACTTGTCAAAAACTTATTTAC
14420976 GTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGTG
1 GTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGTG
14421041 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGA
66 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGA
* * * *
14421106 ATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTACGATTTCTTTTGTA
131 ATTGCTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTATTATA
14421171 ACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGC
196 ACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGC
14421236 TCGAAAAATCCCATCATTTGGTCTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA
261 TCGAAAAATCCCATCATTTGGTC-A-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAA
*
14421301 ATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACCTGTCA
324 ATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTCAAACCTGTCA
14421366 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAG
389 AACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAG
14421431 CAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGT
454 CAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGT
14421496 AAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTA
519 AAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTA
14421561 GACGAACTCCCGAACTTGTCAAAAACTTATTTAC
584 GACGAACTCCCGAACTTGTCAAAAACTTATTTAC
* *
14421595 GTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTATGTG
1 GTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGTG
* *
14421660 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAAAACTTATATACGTAAGA
66 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGA
* * *
14421725 ATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
131 ATTGCTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAA
14421770 AACTTATTTA
Statistics
Matches: 757, Mismatches: 33, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
617 260 0.34
618 4 0.01
619 493 0.65
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (617 bp):
GTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTACGTG
AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGA
ATTGCTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTATTATA
ACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGC
TCGAAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAAT
TAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTCAAACCTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCA
AATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGA
CGAACTCCCGAACTTGTCAAAAACTTATTTAC
Found at i:14421621 original size:62 final size:61
Alignment explanation
Indices: 14421522--14421831 Score: 422
Period size: 62 Copynumber: 5.0 Consensus size: 61
14421512 GTTAATTAAT
* * *
14421522 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14421584 AACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14421646 AACTAATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14421708 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* * *
14421770 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14421832 CTTTTATGAA
Statistics
Matches: 218, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
62 217 1.00
63 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14422053 original size:62 final size:61
Alignment explanation
Indices: 14421983--14422169 Score: 241
Period size: 62 Copynumber: 3.0 Consensus size: 61
14421973 TCTTTGAATT
* *
14421983 AAAAACTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTCGATGAACTTTTGAACGTGTC
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
* * * * *
14422045 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
* * * * *
14422107 AAAAACTTATTTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
14422167 AAA
1 AAA
14422170 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 33 0.30
61 3 0.03
62 75 0.68
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
Found at i:14422290 original size:338 final size:339
Alignment explanation
Indices: 14421643--14422384 Score: 1071
Period size: 338 Copynumber: 2.2 Consensus size: 339
14421633 CAAACTTGTC
* * * * *
14421643 AAAAACTAATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
14421708 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
65 AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
* *
14421773 TTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * ** * * *
14421838 TGAATTCTTTTATAAGTTCGGTTCCTGAAAGTATCCAAGATGATCCATACTTTCGAGCAATTTTT
195 CGAATTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATACCTTCGAGAAATTTTT
** * *
14421903 CGAACATTCCATGCTCGGGAAATAACACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGT
260 CGAACATTCCATGCTCGAAAAATAACACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14421968 TTTGGTCTTTGAATT
325 TTTGGTCTTTAAATT
* * * *
14421983 AAAAACTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTCGATGAACTTTTGAACGTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14422048 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACT-TCTGAACTTGTCAAAAA
65 AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGAC-GAATATCCGAACTTGTCAAAAA
14422112 CTTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * *
14422175 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
194 ACGAATTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATACCTTCGAGAAATTTT
** *
14422240 TCGAACATTCCATGCTCGAAAAATCCCATC-ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
259 TCGAACATTCCATGCTCGAAAAATAACA-CAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAA
14422304 GTTTTGGTCTTTAAATT
323 GTTTTGGTCTTTAAATT
*
14422321 AAAAACTTATTTACGTGAGAATTGTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14422385 CTTTCACGAG
Statistics
Matches: 357, Mismatches: 41, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
337 31 0.09
338 193 0.54
339 3 0.01
340 126 0.35
341 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GAATTCTTTTATAACTTCGGTTCCAAAAAGTATCCAAGATAATCCATACCTTCGAGAAATTTTTC
GAACATTCCATGCTCGAAAAATAACACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCTTTAAATT
Found at i:14422487 original size:215 final size:214
Alignment explanation
Indices: 14422107--14422600 Score: 665
Period size: 215 Copynumber: 2.3 Consensus size: 214
14422097 TGAACTTGTC
*
14422107 AAAAACTTATTTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTTCTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * *
14422171 TTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAA
65 TTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
* * *
14422236 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
130 TTTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
**
14422301 CAAGTTTTGGTCT-TTAAATT
195 CAAGTTTTGGAATGTT-AATT
* * *
14422321 AAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGT-TCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* ** * *
14422386 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TGAGCA
65 TTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-A
* *
14422450 AA-TTTCC-AGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGT
128 AATTTTCCGA-ACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
14422513 AAACAAGTTTTGGAATGTTAATT
192 AAACAAGTTTTGGAATGTTAATT
* * ** *
14422536 AATAACTTAGTTGTGTGAGAATTGTTCCTCTGTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTT-CTC-CTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14422601 AACTTATTTA
Statistics
Matches: 245, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
214 27 0.11
215 181 0.74
216 37 0.15
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGAATGTTAATT
Found at i:14423079 original size:495 final size:493
Alignment explanation
Indices: 14421034--14423157 Score: 2140
Period size: 495 Copynumber: 4.2 Consensus size: 493
14421024 AAAAACTAAT
14421034 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAACTTATTTA
*
14421099 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTACGATTTC
65 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAACTTTTACGATTTC
14421164 TTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACAT
130 TTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACAT
14421229 TCCATGCTCGAAAAATCCCATCATTTGGTCTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
195 TCCATGCTCGAAAAATCCCATCATTTGGTC-ATAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
14421294 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAA
259 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAA
*
14421359 CCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTC
324 CCTGTCAAACTTTCACGAGTTCTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATTCATTC
14421424 CTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTC
389 CTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTC
14421489 ATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
454 ATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
* *
14421529 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAAAACTTATTTA
* * * * *
14421594 CGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAAAACTAATTTATGT
65 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTC--AAACT--TTTA---
* * * * * ** * * * ** *
14421659 GAGAATTGTTTCTCT--CTT-GGTTCTTGGACGAA-CATCCGAACTTGTTAA-AAACTT-ATATA
123 -CGATTTCTTT-TGTAACTTCGGTTC---CAAAAAGTATTC-AA---GATAATCCA-TTCCT-T-
*** * * * ** * * * * *
14421718 CGTA-AGAATTGTTTCTCTCTTGGTTCTTGGACG-AATATCCGA--ACTT-GTCAAAAACTTATT
176 C-TAGA-AATT-TTTCGAACAT--TCCATGCTCGAAAAATCCCATCATTTGGTCATAAA--TAGT
* ** ** ** * * * *** * * ** * *
14421778 TATGTAAGAATTGT-TTC-TCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTTATGA
234 T-TGTCA-TTTTGTAAACAAGTTTTGG-TCTT-TA--AA-TTAAAAACTTAT-TTAC-GTGA-GA
* * * ** * * * * ** * *
14421841 ATTCTTTTATAAGTTCGGTTCCT-GA--AAGTATCCAAGATGATCCATACTTTCGA-GCAATT-T
289 ATT-GTATCT-CCTT-GGTTCTTGGACGAACTTTCAAACCTG-T-CAAACTTTC-ACG-AGTTCT
* * * * *** * * * * * * ** * ** **
14421901 TTCGA-ACATTCCATGCTCGGGAAA-TA-ACACAAATTGGTTTAAATAGTTTG-TC-TTTTTGTA
347 TT-TATA-ACT-CAGGTTCCTTAAAGTATTCA-AGA--CGATTCATTCCTTTGAGCAAATTTCCA
* * ** * * * * *
14421961 AACAAGTT--TTGGTCTTTGA-ATTAAAAAC-TTATTTACGTGAGAATTAGTTCTCTC-TTGGTT
406 AAC-A-TTCAATGATC---GAGA--AATCACGTCA-TTAGGTCA-AAATAGTT-TGTCATT--TT
* * ** * * * *
14422021 CTTCGATGAACTTTTGAAC-GTGTCA--AA-AACTTAT
459 -GT-AAACAAGTTTTGGACTGT-TAATTAATAACTTAG
* * * *
14422055 TTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAACTTATTTA
*
14422120 CGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
65 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAACTTTTACGATTTC
*
14422183 TTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACAT
130 TTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACAT
14422248 TCCATGCTCGAAAAATCCCATCATTTGGTC-TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
195 TCCATGCTCGAAAAATCCCATCATTTGGTCATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
14422312 CTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTTCGAAC
260 CTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAAC
* **
14422377 TTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCC
325 CTGTCAAACTTTCACGAGTTCTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATTCATTCC
* * * * * *
14422442 TTTGAGCAAATTTCCAGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCT
390 TTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCA
*
14422507 TTTTGTAAACAAGTTTTGGAATGTTAATTAATAACTTAG
455 TTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
** * *
14422546 TTGTGTGAGAATTGTTCCTCTGTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAACTTATTTA
*
14422611 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTACGATTTC
65 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAACTTTTACGATTTC
*
14422676 TTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCTTTCCTTCTAGAAATTTTTCGAACAT
130 TTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACAT
14422741 TCCATGCTCGAAAAATCCCATCATTTGGTCTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
195 TCCATGCTCGAAAAATCCCATCATTTGGTC-ATAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
14422806 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAA
259 TCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAA
14422871 CCTGTCAAACTTTCACGAGTTCTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATTCATTC
324 CCTGTCAAACTTTCACGAGTTCTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATTCATTC
14422936 CTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTC
389 CTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTC
14423001 ATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
454 ATTTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
* *
14423041 TTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATTTA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAAAACTTATTTA
* * * * * *
14423106 CGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTCGTCAAA
65 CGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAA
14423158 AACTAATTTA
Statistics
Matches: 1271, Mismatches: 255, Indels: 206
0.73 0.15 0.12
Matches are distributed among these distances:
488 11 0.01
489 3 0.00
490 4 0.00
491 76 0.06
492 11 0.01
493 150 0.12
494 6 0.00
495 474 0.37
496 8 0.01
497 32 0.03
498 18 0.01
499 8 0.01
500 14 0.01
501 7 0.01
502 5 0.00
503 16 0.01
504 9 0.01
506 7 0.01
507 26 0.02
508 21 0.02
509 24 0.02
510 27 0.02
511 17 0.01
512 13 0.01
513 4 0.00
514 6 0.00
515 9 0.01
516 12 0.01
517 17 0.01
518 9 0.01
519 19 0.01
520 32 0.03
521 9 0.01
522 17 0.01
523 4 0.00
524 39 0.03
525 11 0.01
526 76 0.06
527 5 0.00
528 3 0.00
529 12 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (493 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAAAACTTATTTAC
GTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
TTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATT
CCATGCTCGAAAAATCCCATCATTTGGTCATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
TTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACC
TGTCAAACTTTCACGAGTTCTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATTCATTCCT
TTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAGGTCAAAATAGTTTGTCAT
TTTGTAAACAAGTTTTGGACTGTTAATTAATAACTTAG
Found at i:14423133 original size:62 final size:61
Alignment explanation
Indices: 14423034--14423343 Score: 404
Period size: 62 Copynumber: 5.0 Consensus size: 61
14423024 GTTAATTAAT
* * *
14423034 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * * *
14423096 AACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTCGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14423158 AACTAATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * * *
14423220 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAGCTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* * *
14423282 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14423344 CTTTTATGAA
Statistics
Matches: 214, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
62 213 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14423565 original size:62 final size:61
Alignment explanation
Indices: 14423495--14423681 Score: 241
Period size: 62 Copynumber: 3.0 Consensus size: 61
14423485 TCTTTGAATT
* *
14423495 AAAAACTTATTTACGTGAGAATTAGTTCTCTCTTGGTTCTTCGATGAACTTTTGAACGTGTC
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
* * * * *
14423557 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
* * * * *
14423619 AAAAACTTATTTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
14423679 AAA
1 AAA
14423682 CTTTTACAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 33 0.30
61 3 0.03
62 75 0.68
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTCGACGAACTTCTGAACGTGTC
Found at i:14423810 original size:338 final size:340
Alignment explanation
Indices: 14423155--14423833 Score: 931
Period size: 338 Copynumber: 2.0 Consensus size: 340
14423145 CAAACTCGTC
* * * *
14423155 AAAAACTAATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACGTGTCAAA
* *
14423220 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAGCTTGTCAAAAAC
66 AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
* *
14423285 TTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* ** * * *
14423350 TGAATTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATACTTTCGAGCAATTTTT
196 TCAATTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATTTTT
* * *
14423415 CGAACATTCCATGCTCGGGAAATCACACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGT
261 CGAACATTCCACGCTCGGGAAATCACACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14423480 TTTGGTCTTTGAATT
326 TTTGGTCTTTAAATT
* * * **
14423495 AAAAACTTATTTACGTGAGAATTAG-TTCTCTCTTGGTTCTTCGATGAACTTTTGAACGTGTCAA
1 AAAAACTAATTTACGTGAGAATT-GTTTCTCTCTTGGTTCTTCGACGAACATCCGAACGTGTCAA
* * * * *
14423559 AAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACT-TCTGAACTTGTCAAAA
65 AAACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGAC-GAATATCCGAACTTGTCAAAA
14423623 ACTTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * *
14423686 TA-CAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
194 TATCAA-TTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATT
* ** * **
14423750 TTTTGAACATTCCACGCT-TTGAATATCCCATC-TTTTGGTCTAAATAGTTTGTCATTTTGTAAA
258 TTTCGAACATTCCACGCTCGGGAA-ATCACA-CAAATTGGTCTAAATAGTTTGTCATTTTGTAAA
14423813 CAAGTTTTGGTCTTTAAATT
321 CAAGTTTTGGTCTTTAAATT
14423833 A
1 A
14423834 TTATTAACTC
Statistics
Matches: 297, Mismatches: 37, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
337 5 0.02
338 160 0.54
339 3 0.01
340 125 0.42
341 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (340 bp):
AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACGTGTCAAA
AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
TCAATTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATTTTT
CGAACATTCCACGCTCGGGAAATCACACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCTTTAAATT
Found at i:14423882 original size:20 final size:20
Alignment explanation
Indices: 14423830--14423885 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14423820 TGGTCTTTAA
14423830 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14423850 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14423870 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14423886 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14424785 original size:62 final size:62
Alignment explanation
Indices: 14424688--14424972 Score: 426
Period size: 62 Copynumber: 4.6 Consensus size: 62
14424678 GACTCGTATC
*
14424688 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14424750 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGACAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14424812 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14424875 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14424937 AACATATTTACGTAAGAATTGTTTCTCTCTTGGTTC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
14424973 CTAGATGAAC
Statistics
Matches: 200, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 145 0.73
63 55 0.28
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14424863 original size:125 final size:124
Alignment explanation
Indices: 14424688--14424998 Score: 426
Period size: 125 Copynumber: 2.5 Consensus size: 124
14424678 GACTCGTATC
* * *
14424688 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAAAAC
* * *
14424753 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGACAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGACAAA
*
14424812 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAAAA
* * * ** *
14424877 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGACAAA
* * * * * *
14424937 AACATATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTAGATGAACA-CCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA-ATTCCAAACTTGTCAAA
14424999 CTTTTACGAT
Statistics
Matches: 165, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
124 54 0.33
125 111 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGACAAA
Found at i:14425252 original size:62 final size:62
Alignment explanation
Indices: 14425150--14425338 Score: 254
Period size: 62 Copynumber: 3.0 Consensus size: 62
14425140 TCCTTGACTT
* * *
14425150 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTC-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTC
* * * * *
14425212 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
* * * *
14425274 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
14425336 AAA
1 AAA
14425339 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
61 3 0.03
62 108 0.97
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
Found at i:14425455 original size:340 final size:340
Alignment explanation
Indices: 14424809--14425553 Score: 1046
Period size: 340 Copynumber: 2.2 Consensus size: 340
14424799 CAAACTTGAC
* * * * *
14424809 AAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
14424874 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
65 AAACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAA
* *
14424939 CATATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTAGATGAACACCCGAACTTGTCAAACTTTT
130 CATATTTACGTAAGAATTGCTTCTCTCTTGGTTCCTAGACGAACACCCGAACTTGTCAAACTTTT
** * * * *
14425004 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTT
* * ** * * *
14425069 TCGAACGTTTCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAATAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
14425134 TTTTGGTCCTTGACTT
325 TTTTGGTCCTTAAATT
* **
14425150 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14425215 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
* * * *
14425280 TTATTTACGTAAGAATTGCTTCTCTCTTGGTT-CTTGTACGAACATCTGAACTTGTCAAACTTTT
131 ATATTTACGTAAGAATTGCTTCTCTCTTGGTTCCTAG-ACGAACACCCGAACTTGTCAAACTTTT
** *
14425344 ACGATTTCTTTTGTAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTT
* * *
14425409 TTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14425474 TTTTGGTCTTTAAATT
325 TTTTGGTCCTTAAATT
*
14425490 AAAAACTTATTTACGTGAGAATT-GTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14425553 A
65 A
14425554 CTTTCACGAG
Statistics
Matches: 355, Mismatches: 47, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
339 35 0.10
340 296 0.83
341 24 0.07
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
ATATTTACGTAAGAATTGCTTCTCTCTTGGTTCCTAGACGAACACCCGAACTTGTCAAACTTTTA
CGATTTCTTTTACAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14425656 original size:215 final size:214
Alignment explanation
Indices: 14425274--14425769 Score: 622
Period size: 215 Copynumber: 2.3 Consensus size: 214
14425264 GGAACTTGTC
* * *
14425274 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAA
* * * *
14425339 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAGAA
64 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAA
*** * *
14425404 ATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 ATTTCCAGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
**
14425469 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTGGAATGTT-AATT
*
14425490 AAAAACTTATTTACGTGAGAATTGTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
* ** * * *
14425554 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TGAGC
64 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCT-AG-
* *
14425618 AAATTTCCAG-ACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGT
127 AAATTTCCAGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
14425682 AAACAAGTTTTGGAATGTTAATT
192 AAACAAGTTTTGGAATGTTAATT
* * ** * *
14425705 AATAACTTAGTTGTGTGAGAATTGTTCCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
14425770 AACTTATTTA
Statistics
Matches: 242, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
214 2 0.01
215 171 0.71
216 69 0.29
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGACAATCCATTCCTTCTAGAAAT
TTCCAGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGAATGTTAATT
Done.