Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 67 of 144
Found at i:14425805 original size:62 final size:62
Alignment explanation
Indices: 14425719--14425955 Score: 348
Period size: 62 Copynumber: 3.8 Consensus size: 62
14425709 ACTTAGTTGT
* * *
14425719 GTGAGAATTGTTCCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14425781 GTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGGCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * * * *
14425843 GTGAGAATGGTTTCTGTCTTGGTTCTAGGACGAATATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14425905 GTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14425956 CTTTTACGAT
Statistics
Matches: 153, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 153 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (62 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
Found at i:14426180 original size:339 final size:341
Alignment explanation
Indices: 14425767--14426502 Score: 991
Period size: 339 Copynumber: 2.2 Consensus size: 341
14425757 CGAACTTGTC
* * *
14425767 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGGCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGGCAAA
* * * * *
14425832 AACTTATTTACGTGAGAATGGTTTCTGTCTTGGTTCTAGGACGAA-TATCCGAACTTGTCAAAAA
66 AACTTATTTACATGAGAATGGTTTCTCTCCTGGTTCTAGGACAAACT-TCCAAACTTGTCAAAAA
*
14425896 CTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTT
130 CTTATTTACGCAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTT
* * * ** * * *
14425961 ACGATTTGTATTATAACTTCGGTTCC-GGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTT
195 ACGATTTCTATTATAACTTAGATTCCAAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTT
* * * *
14426025 TT-GAACATTCCATGCTC-GAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATA
260 TTCGAACATTCCATGCTCAGA-AAATCCCATAAATTAGCCTAAATAGTTTGTCATTTTGTAAACA
* *
14426088 AGTTTTGTTCGTTGAATT
324 AGTTTTGGTCGTTAAATT
* * *
14426106 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATTTG-AA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAAC-TTGGCAA
* * * * * *
14426170 AAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCAAACTTGTCAGAAA
65 AAACTTATTTACATGAGAATGGTTTCTCTCCTGGTTCTAGGACAAACTTCCAAACTTGTCAAAAA
* * * *
14426235 TTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGCAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTT
* * * *
14426300 ACGGTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
195 ACGATTTCTATTATAACTTAGATTCCAAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTT
* * *
14426365 TTCGAACATTCCATGCTCAGAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAA
260 TTCGAACATTCCATGCTCAGAAAATCCCATAAATTAGCCTAAATAGTTTGTCATTTTGTAAACAA
*
14426430 GTTTTGGTCTTTAAATT
325 GTTTTGGTCGTTAAATT
14426447 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACGAACTTTCAAAC
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAAC
14426503 CTGTCAAACT
Statistics
Matches: 345, Mismatches: 46, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
339 187 0.54
340 64 0.19
341 92 0.27
342 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.38
Consensus pattern (341 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGGCAAA
AACTTATTTACATGAGAATGGTTTCTCTCCTGGTTCTAGGACAAACTTCCAAACTTGTCAAAAAC
TTATTTACGCAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTTA
CGATTTCTATTATAACTTAGATTCCAAAAAAGCATTCAAGATAATCCATTCCTTCGAGAAATTTT
TCGAACATTCCATGCTCAGAAAATCCCATAAATTAGCCTAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGTCGTTAAATT
Found at i:14426205 original size:62 final size:62
Alignment explanation
Indices: 14426106--14426294 Score: 218
Period size: 62 Copynumber: 3.0 Consensus size: 62
14426096 TCGTTGAATT
* * * *
14426106 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATT-TG
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC-TTGTC
* * * **
14426168 AAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *** * *
14426230 AGAAATTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14426292 AAA
1 AAA
14426295 CTTTTACGGT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
61 2 0.02
62 102 0.98
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14426242 original size:401 final size:401
Alignment explanation
Indices: 14425490--14426294 Score: 1046
Period size: 401 Copynumber: 2.0 Consensus size: 401
14425480 TCTTTAAATT
* * * * * *
14425490 AAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
* * ** * *
14425555 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTGAGCAA
66 TTTCACGAGTTCTATTATAACTTCGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
* * * *
14425620 ATTTCCAGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAA
131 ATTTCCAGACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
* ***
14425685 CAAGTTTTGGAATGTTAATTAATAACTTAGTTGTGTGAGAATTGTTCCACTCTTGGTTCTTGGAC
196 CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCACTCTTGGTTCTTGGAC
* * *
14425750 GAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
261 GAACATCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCTTGGATAAA
** * *
14425815 CTTCCAAACTTGGCAAAAACTTATTTACGTGAGAATGGTTTCTGTCTTGGTTCTAGGACGAATAT
326 CTTCCAAACTTGGCAAAAACTTATTTACGCAAGAATGGTTTCTCTCTTGGTTCTAGGACGAACAT
14425880 CCGAACTTGTC
391 CCGAACTTGTC
* *
14425891 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTC-CATAGTTCTTGGACAAACATCCAAACTTGTCAAA
* * * *
14425956 CTTTTACGATTTGTATTATAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATT-CTTTCGAGC
65 CTTTCACGAGTTCTATTATAACTTCGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTT-GAGC
* ** * *
14426020 AATTTTTGA-ACATTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTA
129 AAATTTCCAGACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTA
* * * *
14426084 AATAAGTTTT-G-TTCGTTGAATTAAAAACTTATTTACATGAGAATTGGTT-CTCTCTTGGTTCT
194 AACAAGTTTTGGAAT-GTT-AATTAAAAACTTAGTTACATGAGAATT-GTTCCACTCTTGGTTCT
* * * * *
14426146 TGGACGAACTTTCGAACATT-TGAAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTG
256 TGGACGAACATCCGAAC-TTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCTTG
* * * * *
14426210 GATAAACTTCCAAACTTGTCAGAAATTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGAC
320 GATAAACTTCCAAACTTGGCAAAAACTTATTTACGCAAGAATGGTTTCTCTCTTGGTTCTAGGAC
14426275 GAACATCCGAACTTGTC
385 GAACATCCGAACTTGTC
14426292 AAA
1 AAA
14426295 CTTTTACGGT
Statistics
Matches: 346, Mismatches: 52, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
399 1 0.00
400 4 0.01
401 253 0.73
402 88 0.25
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
TTTCACGAGTTCTATTATAACTTCGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAGACATTCCATGCTCGAGAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCACTCTTGGTTCTTGGAC
GAACATCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCTTGGATAAA
CTTCCAAACTTGGCAAAAACTTATTTACGCAAGAATGGTTTCTCTCTTGGTTCTAGGACGAACAT
CCGAACTTGTC
Found at i:14426636 original size:215 final size:217
Alignment explanation
Indices: 14426236--14426726 Score: 602
Period size: 215 Copynumber: 2.3 Consensus size: 217
14426226 TGTCAGAAAT
* * * * *
14426236 TTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
1 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAACTTTCA
*
14426301 CGGTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
66 CGGTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAATTTT
* * * * * *
14426366 TCGAACATTCCATGCTCAGAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAAG
131 CCAAACATTCAATGATCAGAAAATCACATCATTTAGTCAAAATAGTTTGTCATTTTGTAAACAAG
*
14426431 TTTTGGTCT-TTAAATTAAAAAC
196 TTTTGGACTGTT-AATTAAAAAC
* * *
14426453 TTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACCTGTCAAACTTTCA
1 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAACTTTCA
* ** * *
14426517 CGAG-TTCTTTTATAACTTAGGTTCC-TTAAAGTATTCAAGACGATTCATTCCTT-TGAGCAAA-
66 CG-GTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-AAAT
*
14426578 TTTCCAAACATTCAATGATC-GAGAAATCACGTCA-TTAGGTCAAAATAGTTTGTCATTTTGTAA
128 TTTCCAAACATTCAATGATCAGA-AAATCACATCATTTA-GTCAAAATAGTTTGTCATTTTGTAA
*
14426641 ACAAGTTTTGGACTGTTAATTAATAAC
191 ACAAGTTTTGGACTGTTAATTAAAAAC
* * * * * * *
14426668 TTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAA
14426727 AACTTATTTA
Statistics
Matches: 235, Mismatches: 32, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
214 6 0.03
215 117 0.50
216 90 0.38
217 22 0.09
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (217 bp):
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAACTTTCA
CGGTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAATTTT
CCAAACATTCAATGATCAGAAAATCACATCATTTAGTCAAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGACTGTTAATTAAAAAC
Found at i:14426687 original size:957 final size:956
Alignment explanation
Indices: 14424750--14426912 Score: 3477
Period size: 957 Copynumber: 2.3 Consensus size: 956
14424740 ACTTGTCAAA
* * * * *
14424750 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGACAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAAC
* *
14424815 TTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTT
65 TTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTT
* * * *
14424880 ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAACATATT
129 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATT
* * * *
14424945 TACGTAAGAATTGTTTCTCTCTTGGTTCCTAGATGAACACCCGAACTTGTCAAACTTTTACGATT
194 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
* * * *
14425010 TCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTTCGAAC
259 TCTATTACAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAAC
* * * * *
14425075 GTTTCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGTTTTGG
324 ATTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGG
* *
14425140 TCCTTGACTTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTCGA
389 TCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTCGA
* * * **
14425205 ACTTGTCAAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACT
454 ACTTGTCAAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGACAAACTTCCAAACT
* * *
14425270 TGTCAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGT
519 TGTCAAAAACTTATTTACGCAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
* * *
14425335 CAAACTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGCATTCAAGATAATCCATTCCTTCT
584 CAAACTTTTACGATTTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGATAATCCATTCCTTCT
* *
14425400 AGAAATTTTTTGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTT
649 AGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTTT
14425465 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTT
714 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTT
* * *
14425530 GGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
779 GGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATT
* * * *
14425595 CAAGACGATTCATTCCTTTGAGCAAATTTCCAGACATTCCATGCTCGAGAAATCACATCATTTGG
844 CAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGG
*
14425660 TCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAATGTTAATTAAT
909 TCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
** * *
14425708 AACTTAGTTGTGTGAGAATTGTTCCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAAC
*
14425773 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGGCAAAAACTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
* * * *
14425838 TTTACGTGAGAATGGTTTCTGTCTTGGTTCTAGGACGAATATCCGAACTTGTCAAAAACTTATTT
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTT
* * *
14425903 ACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTTACGATTT
195 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* *
14425968 GTATTATAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTT-GAACA
260 CTATTACAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACA
*
14426032 TTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGTT
325 TTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGGT
* * **
14426097 CGTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
390 CCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTCGAA
* *
14426162 CATT-TGAAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGATAAACTTCCAAACT
455 C-TTGTCAAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGACAAACTTCCAAACT
* * *
14426226 TGTCAGAAATTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
519 TGTCAAAAACTTATTTACGCAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
* *
14426291 CAAACTTTTACGGTTTCTTTTATAACTTAGATTCCAAAAAAGTATTCAAGATAATCCATTCCTTC
584 CAAACTTTTACGATTTCTTTTATAACTTAGATTCC-AAAAAGCATTCAAGATAATCCATTCCTTC
14426356 TAGAAATTTTTCGAACATTCCATGCTC-AGAAAATCCCATCATTTAGTCTAAATAGTTTGTCATT
648 TAGAAATTTTTCGAACATTCCATGCTCGA-AAAATCCCATCATTTAGTCTAAATAGTTTGTCATT
*
14426420 TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTC
712 TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTC
14426485 TTGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTA
777 TTGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTA
*
14426550 TTCAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTA
842 TTCAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTA
*
14426615 GGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
907 GGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
* * *
14426665 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAAAAC
* * *
14426730 TTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAAAACTAA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
* *
14426795 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAAAACTTATAT
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTT
*
14426860 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
195 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14426913 AACTTATTTA
Statistics
Matches: 1103, Mismatches: 98, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
956 269 0.24
957 761 0.69
958 73 0.07
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (956 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTA
CGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTC
TATTACAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAT
TCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGGTC
CTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGATTCTTCAACGAACTTTCGAAC
TTGTCAAAAACTTATTTATATGAGCATTGTTTCTCTCCTGGTTCTTGGACAAACTTCCAAACTTG
TCAAAAACTTATTTACGCAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
AACTTTTACGATTTCTTTTATAACTTAGATTCCAAAAAGCATTCAAGATAATCCATTCCTTCTAG
AAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGG
ACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCA
AGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTC
AAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
Found at i:14426763 original size:62 final size:61
Alignment explanation
Indices: 14426665--14426974 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14426655 GTTAATTAAT
* * * *
14426665 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14426727 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14426789 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14426851 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14426913 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14426975 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14427202 original size:62 final size:60
Alignment explanation
Indices: 14427126--14427296 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14427116 TCTTTGAATT
*
14427126 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14427188 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14427250 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14427297 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14427513 original size:20 final size:20
Alignment explanation
Indices: 14427461--14427516 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14427451 TGGTCTTTAA
14427461 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14427481 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14427501 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14427517 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14428418 original size:62 final size:62
Alignment explanation
Indices: 14428321--14428631 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14428311 GACTCGTATC
*
14428321 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14428383 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14428445 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14428508 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14428570 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14428632 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14428496 original size:125 final size:124
Alignment explanation
Indices: 14428321--14428631 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14428311 GACTCGTATC
* *
14428321 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14428386 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14428445 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14428510 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14428570 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14428632 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14428882 original size:62 final size:62
Alignment explanation
Indices: 14428783--14428971 Score: 263
Period size: 62 Copynumber: 3.0 Consensus size: 62
14428773 TCCTTGAATT
* *
14428783 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTC
* * * * *
14428845 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
* * * *
14428907 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
14428969 AAA
1 AAA
14428972 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
61 3 0.03
62 109 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
Found at i:14429090 original size:340 final size:340
Alignment explanation
Indices: 14428442--14429186 Score: 1118
Period size: 340 Copynumber: 2.2 Consensus size: 340
14428432 CAAACTTGTC
* * * * *
14428442 AAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
14428507 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
65 AAACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAA
*
14428572 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
** * * *
14428637 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* ** * * * *
14428702 TCGAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAACTAGTTTGTCTTTTTGTAAATAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14428767 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTAAATT
**
14428783 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14428848 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
*
14428913 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTT-GTACGAACATCTGAACTTGTCAAACTTTT
131 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAG-ACGAACATCCGAACTTGTCAAACTTTT
** *
14428977 ACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* *
14429042 TCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14429107 TTTTGGTCTTTAAATT
325 TTTTGGTCCTTAAATT
*
14429123 AAAAACTTATTTACGTGAGAATT-GTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14429186 A
65 A
14429187 CTTTCACGAG
Statistics
Matches: 364, Mismatches: 38, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
339 34 0.09
340 306 0.84
341 24 0.07
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14429289 original size:215 final size:214
Alignment explanation
Indices: 14428907--14429402 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 214
14428897 GGAACTTGTC
* * *
14428907 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAA
* * * *
14428972 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
64 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * *
14429037 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 ATTTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
**
14429102 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTGGAATGTT-AATT
*
14429123 AAAAACTTATTTACGTGAGAATTGTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
* ** * *
14429187 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TGAGC
64 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* *
14429251 AAA-TTTCC-AGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTG
127 AAATTTTCCGA-ACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
14429314 TAAACAAGTTTTGGAATGTTAATT
191 TAAACAAGTTTTGGAATGTTAATT
* * ** *
14429338 AATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
14429403 AACTTATTTA
Statistics
Matches: 245, Mismatches: 27, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
214 3 0.01
215 177 0.72
216 65 0.27
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGAATGTTAATT
Found at i:14429810 original size:495 final size:492
Alignment explanation
Indices: 14428848--14429959 Score: 1909
Period size: 495 Copynumber: 2.2 Consensus size: 492
14428838 ACTTGTCAAA
* * * *
14428848 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAAC
14428913 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
65 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
14428978 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
130 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
14429043 CGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
195 CGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
14429108 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTT
260 TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTT
* * *
14429173 TCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATT
325 TCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATT
* * * *
14429238 CATTCCTTTGAGCAAATTTCCAGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGT
390 CATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTCAAAATAGT
*
14429303 TTGTCTTTTTGTAAACAAGTTTTGGAATGTTAATTAAT
455 TTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
* *
14429341 AACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAAAAC
14429406 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
65 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
14429471 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
130 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
14429536 CGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTATAAATAGTTTGTCATTTTGTAAACAA
195 CGAACATTCCATGCTCGAAAAATCCCATCATTTGGTC--TAAATAGTTTGTCATTTTGTAAACAA
*
14429601 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAC
258 GTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAAC
*
14429666 TTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCCAGACGA
323 TTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGA
* *
14429731 TTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGATAAATCACGTCATTAGGTCAAAATA
388 TTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTCAAAATA
*
14429796 GTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
453 GTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
* * * * *
14429836 AAGTTAGTTACGCGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAAAAC
* * * * **
14429901 TTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAA
65 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
14429960 AACTAATTTA
Statistics
Matches: 583, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
493 225 0.39
494 1 0.00
495 357 0.61
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (492 bp):
AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTAC
GATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTC
GAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTT
CAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTC
ATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACATCATTAGGTCAAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
Found at i:14429944 original size:62 final size:62
Alignment explanation
Indices: 14429843--14430145 Score: 410
Period size: 62 Copynumber: 4.9 Consensus size: 62
14429833 AATAAGTTAG
* * * *
14429843 TTACGCGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* * * * * *
14429905 TTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAAAACTAAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
14429967 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
14430029 ATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAAAACTTAT
* * * * * *
14430091 TTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAATTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14430146 CTTTTATGAA
Statistics
Matches: 211, Mismatches: 28, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
62 211 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
Found at i:14430367 original size:62 final size:61
Alignment explanation
Indices: 14430297--14430483 Score: 250
Period size: 62 Copynumber: 3.0 Consensus size: 61
14430287 TCTTTGAATT
* * *
14430297 AAAAACTTATTTACATGAGAATTAGTTCTCTCTTGGTTCTTGGATGAACTTTTGAACGTGTC
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGTC
* * * *
14430359 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGTC
* * * *
14430421 AAAAACTTATTTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGTC
14430481 AAA
1 AAA
14430484 CTTTTACAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
60 33 0.30
61 3 0.03
62 75 0.68
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACGTGTC
Found at i:14430612 original size:338 final size:340
Alignment explanation
Indices: 14429957--14430635 Score: 944
Period size: 338 Copynumber: 2.0 Consensus size: 340
14429947 CAAACTTGTC
* * *
14429957 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAAA
*
14430022 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
66 AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
* * * *
14430087 TTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAATTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* ** * *
14430152 TGAATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATACTTTCGAGCAATTTTT
196 TCAATTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGCAATTTTT
* * *
14430217 CGAACATTCCATGCTCGGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGT
261 CGAACATTCCACGCTCGGGAAATCGCACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14430282 TTTGGTCTTTGAATT
326 TTTGGTCTTTAAATT
* * * **
14430297 AAAAACTTATTTACATGAGAATTAG-TTCTCTCTTGGTTCTTGGATGAACTTTTGAACGTGTCAA
1 AAAAACTAATTTACATGAGAATT-GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAA
* * * * *
14430361 AAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACT-TCTGAACTTGTCAAAA
65 AAACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGAC-GAATATCCGAACTTGTCAAAA
14430425 ACTTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* *
14430488 TA-CAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAG-AATT
194 TATCAA-TTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGCAA-T
** *
14430551 TTTTCGAACATTCCACGCT-TTGAATATC-C-CATCATCTGGTCTAAATAGTTTGTCATTTTGTA
257 TTTTCGAACATTCCACGCTCGGGAA-ATCGCACA-AAT-TGGTCTAAATAGTTTGTCATTTTGTA
14430613 AACAAGTTTTGGTCTTTAAATT
319 AACAAGTTTTGGTCTTTAAATT
14430635 A
1 A
14430636 TTATTAACTC
Statistics
Matches: 300, Mismatches: 32, Indels: 16
0.86 0.09 0.05
Matches are distributed among these distances:
336 2 0.01
337 10 0.03
338 155 0.52
339 2 0.01
340 127 0.42
341 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (340 bp):
AAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAAA
AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
TCAATTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGCAATTTTT
CGAACATTCCACGCTCGGGAAATCGCACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCTTTAAATT
Found at i:14430684 original size:20 final size:20
Alignment explanation
Indices: 14430632--14430687 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14430622 TGGTCTTTAA
14430632 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14430652 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14430672 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14430688 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14431588 original size:62 final size:62
Alignment explanation
Indices: 14431491--14431801 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14431481 GACTCGTATC
*
14431491 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14431553 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14431615 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14431678 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14431740 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14431802 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14431666 original size:125 final size:124
Alignment explanation
Indices: 14431491--14431801 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14431481 GACTCGTATC
* *
14431491 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14431556 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14431615 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14431680 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14431740 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14431802 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14432052 original size:62 final size:62
Alignment explanation
Indices: 14431954--14432141 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
14431944 CCTTGAATTT
* **
14431954 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAAC-TTCGGAACTTGTCA
* * * *
14432016 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCGGAACTTGTCA
* * *
14432078 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCGGAACTTGTCA
14432140 AA
1 AA
14432142 CTTTTACAAT
Statistics
Matches: 112, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
61 3 0.03
62 109 0.97
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTCGGAACTTGTCA
Found at i:14432260 original size:340 final size:341
Alignment explanation
Indices: 14431613--14432284 Score: 990
Period size: 340 Copynumber: 2.0 Consensus size: 341
14431603 AAACTTGTCA
* ** * *
14431613 AAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AAAACTTATTTACGTGAGAATTGTGTTCTCTCTTGGTTCTTCAACGAAATTCCAAACTTGTCAAA
* *
14431678 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
*
14431743 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
* ** * * *
14431808 CGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTT
196 CAATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
* * * * * *
14431873 CAAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAACTAGTTTGTCTTTTTGTAAATAAGT
261 CAAACATTCCACGCTCGGGAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
14431938 TTTGGTCCTTGAATTT
326 TTTGGTCCTTGAATTT
* * *
14431954 AAAACTTATTTACGTGAGAATTG-GTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTGTTCTCTCTTGGTTCTTCAACGAAATTCCAAACTTGTCAAA
* * * *
14432018 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
* *
14432083 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
* *
14432148 CAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
196 CAATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
* ** *
14432213 CGAACATTCCACGCT-TTGAATATCCCAT-CATCTGGTCTAAATAGTTTGTCATTTTGTAAACAA
261 CAAACATTCCACGCTCGGGAA-ATCCCATAAAT-TGGTCTAAATAGTTTGTCATTTTGTAAACAA
14432276 GTTTTGGTC
324 GTTTTGGTC
14432285 TTTAAATTAT
Statistics
Matches: 294, Mismatches: 35, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
339 5 0.02
340 266 0.90
341 23 0.08
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (341 bp):
AAAACTTATTTACGTGAGAATTGTGTTCTCTCTTGGTTCTTCAACGAAATTCCAAACTTGTCAAA
AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
CAATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CAAACATTCCACGCTCGGGAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTGAATTT
Found at i:14432342 original size:20 final size:20
Alignment explanation
Indices: 14432290--14432345 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
14432280 TGGTCTTTAA
*
14432290 ATTATTATTAACTTAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14432310 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14432330 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14432346 GAGCAATTCT
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14433255 original size:62 final size:62
Alignment explanation
Indices: 14433149--14433459 Score: 433
Period size: 62 Copynumber: 5.0 Consensus size: 62
14433139 GACTCGTATC
* * *
14433149 AACTTAGTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCAAACCTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14433211 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTATTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14433273 AACTTATTTACATGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14433336 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14433398 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14433460 CTTTTACGAT
Statistics
Matches: 220, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
62 166 0.75
63 54 0.25
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14433370 original size:125 final size:124
Alignment explanation
Indices: 14433149--14433459 Score: 426
Period size: 125 Copynumber: 2.5 Consensus size: 124
14433139 GACTCGTATC
* * * *
14433149 AACTTAGTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGACGAACTTCCAAACCTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14433214 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTATTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTATTGCACAAACATCCAAACTTGTCAAA
* * *
14433273 AACTTATTTACATGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * * **
14433338 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTATTGCACAAACATCCAAACTTGTCAAA
* * *
14433398 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14433460 CTTTTACGAT
Statistics
Matches: 163, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
124 54 0.33
125 109 0.67
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTATTGCACAAACATCCAAACTTGTCAAA
Found at i:14433710 original size:62 final size:62
Alignment explanation
Indices: 14433611--14433799 Score: 263
Period size: 62 Copynumber: 3.0 Consensus size: 62
14433601 TCCTTGAATT
* *
14433611 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTC
* * * * *
14433673 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
* * * *
14433735 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
14433797 AAA
1 AAA
14433800 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
61 3 0.03
62 109 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
Found at i:14433918 original size:340 final size:340
Alignment explanation
Indices: 14433270--14434014 Score: 1109
Period size: 340 Copynumber: 2.2 Consensus size: 340
14433260 CAAACTTGTC
* * * * * *
14433270 AAAAACTTATTTACATGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * *
14433335 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
65 AAACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAA
*
14433400 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
** * * *
14433465 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* ** * * * *
14433530 TCGAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAACTAGTTTGTCTTTTTGTAAATAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14433595 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTAAATT
**
14433611 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14433676 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
*
14433741 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTT-GTACGAACATCTGAACTTGTCAAACTTTT
131 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAG-ACGAACATCCGAACTTGTCAAACTTTT
** *
14433805 ACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* *
14433870 TCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14433935 TTTTGGTCTTTAAATT
325 TTTTGGTCCTTAAATT
*
14433951 AAAAACTTATTTACGTGAGAATT-GTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14434014 A
65 A
14434015 CTTTCACGAG
Statistics
Matches: 363, Mismatches: 39, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
339 34 0.09
340 306 0.84
341 23 0.06
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14434227 original size:215 final size:215
Alignment explanation
Indices: 14433735--14434229 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 215
14433725 GGAACTTGTC
* * * *
14433735 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14433800 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * *
14433865 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
130 ATTTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
**
14433930 ACAAGTTTTGGTCTTTAAATT
195 ACAAGTTTTGGAATTTAAATT
* * * *
14433951 AAAAACTTATTTACGTGAGAATTGTATCTC-CATGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* ** * *
14434015 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATT-CTT-TGAGC
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* *
14434078 AAA-TTTCC-AGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTG
128 AAATTTTCCGA-ACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
14434141 TAAACAAGTTTTGGAATGTT-AATT
192 TAAACAAGTTTTGGAAT-TTAAATT
* **
14434165 AATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTAGTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14434230 AACTTATTTA
Statistics
Matches: 243, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
213 3 0.01
214 101 0.42
215 112 0.46
216 27 0.11
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (215 bp):
AAAAACTTAGTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGAATTTAAATT
Found at i:14434761 original size:62 final size:61
Alignment explanation
Indices: 14434663--14434972 Score: 440
Period size: 62 Copynumber: 5.0 Consensus size: 61
14434653 GTTAATTAAT
* * * *
14434663 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * *
14434725 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14434787 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14434849 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14434911 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14434973 CTTTTATGAA
Statistics
Matches: 223, Mismatches: 22, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
62 222 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14435200 original size:62 final size:60
Alignment explanation
Indices: 14435124--14435294 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14435114 TCTTTGAATT
*
14435124 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14435186 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14435248 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14435295 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14435439 original size:338 final size:340
Alignment explanation
Indices: 14434784--14435462 Score: 976
Period size: 338 Copynumber: 2.0 Consensus size: 340
14434774 CAAACTTGTC
* * **
14434784 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTAATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGACGAACATCCGAACGTGCCAAA
*
14434849 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
66 AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
* *
14434914 TTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* ** * * *
14434979 TGAATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATACTTTCGAGCAATTTTT
196 CGAATTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATTTTT
* * *
14435044 CGAACATTCCATGCTCAGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGT
261 CGAACATTCCACGCTCAGGAAATCGCACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14435109 TTTGGTCTTTGAATT
326 TTTGGTCTTTAAATT
* * * *
14435124 AAAAACTTATTTACGTGAGAATTAG-TTATCTCTTGGTTCTTGGATGAACTTTCGAACGTGCCAA
1 AAAAACTAATTTACGTGAGAATT-GTTTATCTCTTGGTTCTTGGACGAACATCCGAACGTGCCAA
* * * * *
14435188 AAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACT-TCTGAACTTGTCAAAA
65 AAACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGAC-GAATATCCGAACTTGTCAAAA
14435252 ACTTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
129 ACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * *
14435315 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
194 TACGAATTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATTT
** *
14435380 TTCGAACATTCCACGCT-TTGAATATC-C-CATCATCTGGTCTAAATAGTTTGTCATTTTGTAAA
259 TTCGAACATTCCACGCTCAGGAA-ATCGCACA-AAT-TGGTCTAAATAGTTTGTCATTTTGTAAA
14435442 CAAGTTTTGGTCTTTAAATT
321 CAAGTTTTGGTCTTTAAATT
14435462 A
1 A
14435463 TTATTAACTC
Statistics
Matches: 302, Mismatches: 32, Indels: 12
0.87 0.09 0.03
Matches are distributed among these distances:
336 2 0.01
337 6 0.02
338 161 0.53
339 2 0.01
340 127 0.42
341 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTAATTTACGTGAGAATTGTTTATCTCTTGGTTCTTGGACGAACATCCGAACGTGCCAAA
AACTTATATACGTAAGAATTGTTTCTCTCATGGTTCTTGGACGAATATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGAATTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATACCTTCGAGAAATTTTT
CGAACATTCCACGCTCAGGAAATCGCACAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCTTTAAATT
Found at i:14435511 original size:20 final size:20
Alignment explanation
Indices: 14435459--14435514 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14435449 TGGTCTTTAA
14435459 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14435479 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14435499 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14435515 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14436412 original size:62 final size:62
Alignment explanation
Indices: 14436315--14436625 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14436305 GACTCGTATC
*
14436315 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14436377 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14436439 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14436502 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14436564 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14436626 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14436490 original size:125 final size:124
Alignment explanation
Indices: 14436315--14436625 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14436305 GACTCGTATC
* *
14436315 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14436380 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14436439 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14436504 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14436564 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14436626 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14436876 original size:62 final size:62
Alignment explanation
Indices: 14436777--14436965 Score: 236
Period size: 62 Copynumber: 3.0 Consensus size: 62
14436767 CCCTTGAATT
* * *
14436777 AAAAACTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTC
* * * * * * *
14436839 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
* * * *
14436901 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
14436963 AAA
1 AAA
14436966 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
61 3 0.03
62 104 0.97
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
Found at i:14437435 original size:62 final size:61
Alignment explanation
Indices: 14437337--14437646 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14437327 GTTAATTAAT
* * * *
14437337 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14437399 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14437461 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14437523 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14437585 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14437647 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14437874 original size:62 final size:60
Alignment explanation
Indices: 14437798--14437968 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14437788 TCTTTGAATT
*
14437798 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14437860 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14437922 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14437969 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14437942 original size:340 final size:338
Alignment explanation
Indices: 14436436--14438136 Score: 1327
Period size: 340 Copynumber: 5.0 Consensus size: 338
14436426 CAAACTTGTC
* * * *
14436436 AAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG--TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * *
14436501 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
64 AAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
*
14436566 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * *
14436631 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTT
* * * * * *
14436696 TCAAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAACTAGTTTGTCTTTTTGTAAATAAG
259 TCGAACATTCCATGCTC-GGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
* *
14436761 TTTTGGCCCTTGAATT
323 TTTTGGTCTTTGAATT
* **
14436777 AAAAACTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14436842 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCCAAAAAC
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
14436907 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* ** * *
14436972 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTT
* * * *
14437037 CGAACATTCCATGCTCGAAAAATCCCATC-ATTTGGTCTATAAATAGTTTGTCATTTTGTAAACA
260 CGAACATTCCATGCTCG-GAAATCGCA-CAAATTGGT-T-TAAATAGTTTGTCTTTTTGTAAACA
*
14437101 AGTTTTGGTCTTTAAATT
321 AGTTTTGGTCTTTGAATT
* *
14437119 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACCTGTC--A
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * * *
14437181 AAC-T-TTCAC--GAGT-TCT-TTTATAACTTA-GGTTCCTT-AAAGTA-TT-CAAGACGAT-TC
65 AACTTATTTACGTGAGTAT-TGTTTCT--CTCATGGTT-CTTGGACGAACTTCCGA-AC-TTGTC
** * * * * *** *** ** * *
14437235 --ATTCCT-TTGA-G-CA-AA-T-TTCCAAACATTCAATGATCGA-GAA-ATCACG-TCATTAGG
124 AAAAACTTATTTACGTAAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACATC-CGAAC-TT--G
* * * ** * * * * * *
14437289 TCAAA---ATA-GTTTGTCATTTTGTAAAC--AAGTT-TTG-GACTGTT-AA-TTAAT-AACTTA
184 TCAAACTTTTACGATT-TC-TTTTAT-AACTTCGGTTCCTGAAAGTATTCAAGATAATCCA-TT-
* * *** * * * * * * **
14437343 GTTACGTCAG-AATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATT
244 CTTTCG--AGAAATT-TTTCGAAC--A-TTC---CATG--CT-CGGAAATCG-CACAAA-TTGGT
* * ** * ***** *
14437407 TACGTGAGAATTGCTTCTCTCTTGGTTCTTGT-ATGAACTTCCAAAC-TTG--TC
295 T---T-A-AATAG-TT-TGTC-T--TT-TTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
14437458 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14437523 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAAAAA
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACT-TCCGAACTTGTCAAAAA
* *
14437587 CTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * *
14437652 ATGAATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATACTTTCGAGCAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTT
14437717 TCGAACATTCCATGCTCAGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
259 TCGAACATTCCATGCTC-GGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
14437782 TTTTGGTCTTTGAATT
323 TTTTGGTCTTTGAATT
* * * *
14437798 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTTTCGAACGTGCCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14437863 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTCAAAAAC
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
14437928 TTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
** * *
14437991 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTT
* ** * * *
14438056 CGAACATTCCACGCTTTGAATATC-C-CATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAA
260 CGAACATTCCATGCTCGGAA-ATCGCACA-AAT-TGGTTTAAATAGTTTGTCTTTTTGTAAACAA
*
14438119 GTTTTGGTCTTTAAATT
322 GTTTTGGTCTTTGAATT
14438136 A
1 A
14438137 TTATTAACTC
Statistics
Matches: 1039, Mismatches: 226, Indels: 193
0.71 0.16 0.13
Matches are distributed among these distances:
320 1 0.00
321 6 0.01
322 4 0.00
323 8 0.01
324 10 0.01
325 11 0.01
326 16 0.02
327 12 0.01
328 8 0.01
329 1 0.00
330 3 0.00
331 3 0.00
332 8 0.01
333 5 0.00
334 13 0.01
335 14 0.01
336 12 0.01
337 21 0.02
338 167 0.16
339 39 0.04
340 396 0.38
341 57 0.05
342 80 0.08
343 6 0.01
344 4 0.00
345 5 0.00
346 12 0.01
347 14 0.01
348 8 0.01
349 10 0.01
350 3 0.00
351 3 0.00
352 1 0.00
353 8 0.01
354 13 0.01
355 17 0.02
356 10 0.01
357 11 0.01
358 8 0.01
359 6 0.01
360 4 0.00
361 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTTC
GAACATTCCATGCTCGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGTTT
TGGTCTTTGAATT
Found at i:14438185 original size:20 final size:20
Alignment explanation
Indices: 14438133--14438188 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14438123 TGGTCTTTAA
14438133 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14438153 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14438173 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14438189 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14439086 original size:62 final size:62
Alignment explanation
Indices: 14438989--14439299 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14438979 GACTCGTATC
*
14438989 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14439051 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14439113 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14439176 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14439238 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14439300 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14439164 original size:125 final size:124
Alignment explanation
Indices: 14438989--14439299 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14438979 GACTCGTATC
* *
14438989 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14439054 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14439113 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14439178 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14439238 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14439300 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14439559 original size:62 final size:62
Alignment explanation
Indices: 14439451--14439638 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 62
14439441 CCCTTGAATT
* * * *
14439451 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * * * *
14439513 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14439575 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14439637 AA
1 AA
14439639 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
61 3 0.03
62 102 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14440108 original size:62 final size:61
Alignment explanation
Indices: 14440010--14440319 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14440000 GTTAATTAAT
* * * *
14440010 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14440072 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14440134 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14440196 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14440258 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14440320 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14440547 original size:62 final size:60
Alignment explanation
Indices: 14440471--14440641 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14440461 TCTTTGAATT
*
14440471 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14440533 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14440595 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14440642 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14440858 original size:20 final size:20
Alignment explanation
Indices: 14440806--14440861 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14440796 TGGTCTTTAA
14440806 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14440826 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14440846 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14440862 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14441759 original size:62 final size:62
Alignment explanation
Indices: 14441662--14441972 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14441652 GACTCGTATC
*
14441662 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14441724 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14441786 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14441849 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14441911 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14441973 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14441837 original size:125 final size:124
Alignment explanation
Indices: 14441662--14441972 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14441652 GACTCGTATC
* *
14441662 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14441727 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14441786 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14441851 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14441911 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14441973 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14442232 original size:62 final size:62
Alignment explanation
Indices: 14442124--14442311 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 62
14442114 CCCTTGAATT
* * * *
14442124 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * * * *
14442186 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14442248 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14442310 AA
1 AA
14442312 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
61 3 0.03
62 102 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14442781 original size:62 final size:61
Alignment explanation
Indices: 14442683--14442992 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14442673 GTTAATTAAT
* * * *
14442683 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14442745 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14442807 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14442869 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14442931 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14442993 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14443220 original size:62 final size:60
Alignment explanation
Indices: 14443144--14443314 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14443134 TCTTTGAATT
*
14443144 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14443206 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14443268 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14443315 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14443531 original size:20 final size:20
Alignment explanation
Indices: 14443479--14443534 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14443469 TGGTCTTTAA
14443479 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14443499 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14443519 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14443535 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14444432 original size:62 final size:62
Alignment explanation
Indices: 14444335--14444645 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14444325 GACTCGTATC
*
14444335 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14444397 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14444459 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14444522 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14444584 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14444646 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14444510 original size:125 final size:124
Alignment explanation
Indices: 14444335--14444645 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14444325 GACTCGTATC
* *
14444335 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14444400 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14444459 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14444524 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14444584 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14444646 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14444905 original size:62 final size:62
Alignment explanation
Indices: 14444797--14444984 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 62
14444787 CCCTTGAATT
* * * *
14444797 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * * * *
14444859 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14444921 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14444983 AA
1 AA
14444985 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
61 3 0.03
62 102 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14445454 original size:62 final size:61
Alignment explanation
Indices: 14445356--14445665 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14445346 GTTAATTAAT
* * * *
14445356 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14445418 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14445480 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14445542 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14445604 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14445666 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14445893 original size:62 final size:60
Alignment explanation
Indices: 14445817--14445987 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14445807 TCTTTGAATT
*
14445817 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14445879 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14445941 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14445988 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14446204 original size:20 final size:20
Alignment explanation
Indices: 14446152--14446207 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14446142 TGGTCTTTAA
14446152 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14446172 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14446192 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14446208 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14447105 original size:62 final size:62
Alignment explanation
Indices: 14447008--14447318 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14446998 GACTCGTATC
*
14447008 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14447070 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14447132 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14447195 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14447257 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14447319 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14447183 original size:125 final size:124
Alignment explanation
Indices: 14447008--14447318 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14446998 GACTCGTATC
* *
14447008 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14447073 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14447132 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14447197 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14447257 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14447319 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14447578 original size:62 final size:62
Alignment explanation
Indices: 14447470--14447657 Score: 225
Period size: 62 Copynumber: 3.0 Consensus size: 62
14447460 CCCTTGAATT
* * * *
14447470 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * * * *
14447532 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGTACTTGCCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14447594 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14447656 AA
1 AA
14447658 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
61 3 0.03
62 102 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14448127 original size:62 final size:61
Alignment explanation
Indices: 14448029--14448338 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14448019 GTTAATTAAT
* * * *
14448029 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14448091 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14448153 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14448215 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14448277 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14448339 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14448566 original size:62 final size:60
Alignment explanation
Indices: 14448490--14448660 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14448480 TCTTTGAATT
*
14448490 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14448552 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14448614 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14448661 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14448877 original size:20 final size:20
Alignment explanation
Indices: 14448825--14448880 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14448815 TGGTCTTTAA
14448825 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14448845 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14448865 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14448881 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14449778 original size:62 final size:62
Alignment explanation
Indices: 14449681--14449991 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14449671 GACTCGTATC
*
14449681 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14449743 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14449805 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14449868 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14449930 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14449992 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14449856 original size:125 final size:124
Alignment explanation
Indices: 14449681--14449991 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14449671 GACTCGTATC
* *
14449681 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14449746 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14449805 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14449870 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14449930 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14449992 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14450251 original size:62 final size:62
Alignment explanation
Indices: 14450143--14450330 Score: 234
Period size: 62 Copynumber: 3.0 Consensus size: 62
14450133 CCCTTGAATT
* * * *
14450143 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * * *
14450205 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGCCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14450267 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14450329 AA
1 AA
14450331 CTTTTACGAT
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
61 3 0.03
62 104 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14450800 original size:62 final size:61
Alignment explanation
Indices: 14450702--14451011 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14450692 GTTAATTAAT
* * * *
14450702 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14450764 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14450826 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14450888 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14450950 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14451012 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14451239 original size:62 final size:60
Alignment explanation
Indices: 14451163--14451333 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14451153 TCTTTGAATT
*
14451163 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14451225 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14451287 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14451334 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14451550 original size:20 final size:20
Alignment explanation
Indices: 14451498--14451553 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14451488 TGGTCTTTAA
14451498 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14451518 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14451538 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14451554 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14452450 original size:62 final size:62
Alignment explanation
Indices: 14452353--14452663 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14452343 GACTCGTATC
*
14452353 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14452415 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14452477 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14452540 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14452602 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14452664 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14452528 original size:125 final size:124
Alignment explanation
Indices: 14452353--14452663 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14452343 GACTCGTATC
* *
14452353 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14452418 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14452477 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14452542 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14452602 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14452664 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14452914 original size:62 final size:62
Alignment explanation
Indices: 14452815--14453003 Score: 245
Period size: 62 Copynumber: 3.0 Consensus size: 62
14452805 CCCTTGAATT
* * *
14452815 AAAAACTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTC
* * * * * *
14452877 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGCC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
* * * *
14452939 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
14453001 AAA
1 AAA
14453004 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
61 3 0.03
62 106 0.97
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTC
Found at i:14453473 original size:62 final size:61
Alignment explanation
Indices: 14453375--14453684 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14453365 GTTAATTAAT
* * * *
14453375 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14453437 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14453499 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14453561 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14453623 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14453685 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14453912 original size:62 final size:60
Alignment explanation
Indices: 14453836--14454006 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 60
14453826 TCTTTGAATT
*
14453836 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTT-TCGAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCT-GAACGTGCC
* * * *
14453898 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCTGAACGTGCC
*
14453960 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14454007 ATCCGAACTT
Statistics
Matches: 98, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
60 20 0.20
61 3 0.03
62 74 0.76
63 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCTGAACGTGCC
Found at i:14453980 original size:340 final size:338
Alignment explanation
Indices: 14452474--14454174 Score: 1336
Period size: 340 Copynumber: 5.0 Consensus size: 338
14452464 CAAACTTGTC
* * * *
14452474 AAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG--TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * * * * *
14452539 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
64 AAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
*
14452604 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * *
14452669 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTT
* * * * * *
14452734 TCAAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAACTAGTTTGTCTTTTTGTAAATAAG
259 TCGAACATTCCATGCTC-GGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
* *
14452799 TTTTGGCCCTTGAATT
323 TTTTGGTCTTTGAATT
* **
14452815 AAAAACTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14452880 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGCCAAAAAC
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
14452945 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* ** * *
14453010 CGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTT
* * * *
14453075 CGAACATTCCATGCTCGAAAAATCCCATC-ATTTGGTCTATAAATAGTTTGTCATTTTGTAAACA
260 CGAACATTCCATGCTCG-GAAATCGCA-CAAATTGGT-T-TAAATAGTTTGTCTTTTTGTAAACA
*
14453139 AGTTTTGGTCTTTAAATT
321 AGTTTTGGTCTTTGAATT
* *
14453157 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACCTGTC--A
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * * * *
14453219 AAC-T-TTCAC--GAGT-TCT-TTTATAACTTA-GGTTCCTT-AAAGTA-TT-CAAGACGAT-TC
65 AACTTATTTACGTGAGTAT-TGTTTCT--CTCATGGTT-CTTGGACGAACTTCCGA-AC-TTGTC
** * * * * *** *** ** * *
14453273 --ATTCCT-TTGA-G-CA-AA-T-TTCCAAACATTCAATGATCGA-GAA-ATCACG-TCATTAGG
124 AAAAACTTATTTACGTAAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACATC-CGAAC-TT--G
* * * ** * * * * * *
14453327 TCAAA---ATA-GTTTGTCATTTTGTAAAC--AAGTT-TTG-GACTGTT-AA-TTAAT-AACTTA
184 TCAAACTTTTACGATT-TC-TTTTAT-AACTTCGGTTCCTGAAAGTATTCAAGATAATCCA-TT-
* * *** * * * * * * **
14453381 GTTACGTCAG-AATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAAAACTTATT
244 CTTTCG--AGAAATT-TTTCGAAC--A-TTC---CATG--CT-CGGAAATCG-CACAAA-TTGGT
* * ** * ***** *
14453445 TACGTGAGAATTGCTTCTCTCTTGGTTCTTGT-ATGAACTTCCAAAC-TTG--TC
295 T---T-A-AATAG-TT-TGTC-T--TT-TTGTAAACAAGTTTTGGTCTTTGAATT
* * * *
14453496 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14453561 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAAAAA
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACT-TCCGAACTTGTCAAAAA
* *
14453625 CTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * * * *
14453690 ATGAATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATACTTTCGAGCAATTTT
194 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTT
14453755 TCGAACATTCCATGCTCAGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
259 TCGAACATTCCATGCTC-GGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAG
14453820 TTTTGGTCTTTGAATT
323 TTTTGGTCTTTGAATT
* * * *
14453836 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTTTCGAACGTGCCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14453901 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCTGAACTTGTCAAAAAC
65 AACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
14453966 TTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
** * *
14454029 CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
195 CGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTT
* ** * * *
14454094 CGAACATTCCACGCTTTGAATATC-C-CATCATCTGGTCTAAATAGTTTGTCATTTTGTAAACAA
260 CGAACATTCCATGCTCGGAA-ATCGCACA-AAT-TGGTTTAAATAGTTTGTCTTTTTGTAAACAA
*
14454157 GTTTTGGTCTTTAAATT
322 GTTTTGGTCTTTGAATT
14454174 A
1 A
14454175 TTATTAACTC
Statistics
Matches: 1040, Mismatches: 225, Indels: 193
0.71 0.15 0.13
Matches are distributed among these distances:
320 1 0.00
321 6 0.01
322 4 0.00
323 8 0.01
324 10 0.01
325 11 0.01
326 16 0.02
327 12 0.01
328 8 0.01
329 1 0.00
330 3 0.00
331 3 0.00
332 8 0.01
333 6 0.01
334 13 0.01
335 14 0.01
336 12 0.01
337 21 0.02
338 167 0.16
339 39 0.04
340 396 0.38
341 57 0.05
342 80 0.08
343 6 0.01
344 4 0.00
345 5 0.00
346 12 0.01
347 14 0.01
348 8 0.01
349 10 0.01
350 3 0.00
351 3 0.00
352 1 0.00
353 8 0.01
354 13 0.01
355 17 0.02
356 10 0.01
357 11 0.01
358 8 0.01
359 6 0.01
360 4 0.00
361 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (338 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
ACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGAAATTTTTC
GAACATTCCATGCTCGGAAATCGCACAAATTGGTTTAAATAGTTTGTCTTTTTGTAAACAAGTTT
TGGTCTTTGAATT
Found at i:14454223 original size:20 final size:20
Alignment explanation
Indices: 14454171--14454226 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14454161 TGGTCTTTAA
14454171 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14454191 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14454211 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14454227 GAGCAATTCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14455124 original size:62 final size:62
Alignment explanation
Indices: 14455027--14455337 Score: 469
Period size: 62 Copynumber: 5.0 Consensus size: 62
14455017 GACTCGTATC
*
14455027 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14455089 AACTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14455151 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAG
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * **
14455214 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14455276 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14455338 CTTTTACGAT
Statistics
Matches: 226, Mismatches: 22, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 170 0.75
63 56 0.25
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14455202 original size:125 final size:124
Alignment explanation
Indices: 14455027--14455337 Score: 462
Period size: 125 Copynumber: 2.5 Consensus size: 124
14455017 GACTCGTATC
* *
14455027 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
* * *
14455092 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACGAACTTTCAAACTTGTCAAA
66 TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* *
14455151 AACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAA
1 AACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAA
* * * **
14455216 CTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAA
65 CTTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
* * *
14455276 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACA-TCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCAAACTTGTCAAA
14455338 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
124 55 0.33
125 113 0.67
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC
TTAATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGCACAAACATCCAAACTTGTCAAA
Found at i:14455597 original size:62 final size:62
Alignment explanation
Indices: 14455489--14455676 Score: 243
Period size: 62 Copynumber: 3.0 Consensus size: 62
14455479 CCCTTGAATT
* * * *
14455489 AAAATTTATTTACGCGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTC-GAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAAC-TTCGGAACTTGTCA
* * * * *
14455551 AAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTCGGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
* * * *
14455613 AAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
14455675 AA
1 AA
14455677 CTTTTACGAT
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
61 3 0.03
62 106 0.97
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTCGGAACTTGTCA
Found at i:14456146 original size:62 final size:61
Alignment explanation
Indices: 14456048--14456357 Score: 431
Period size: 62 Copynumber: 5.0 Consensus size: 61
14456038 GTTAATTAAT
* * * *
14456048 AACTTAGTTACGTCAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-CCGAACTTGTCAAA
* * * * *
14456110 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* * *
14456172 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTTAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
* *
14456234 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-CTCCGAACTTGTCAAA
* *
14456296 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TCCGAACTTGTCAAA
14456358 CTTTTATGAA
Statistics
Matches: 221, Mismatches: 24, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
62 220 1.00
63 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCGAACTTGTCAAA
Found at i:14456585 original size:62 final size:60
Alignment explanation
Indices: 14456509--14456679 Score: 227
Period size: 62 Copynumber: 2.8 Consensus size: 60
14456499 TCTTTGAATT
*
14456509 AAAAACTTATTTACGTGAGAATTAGTTATCTCTTGGTTCTTGGATGAACTTTC-GAACGTGCC
1 AAAAACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAAC-TTCGGAACGTGCC
* * * *
14456571 AAAAACTTATTTACGTGAGTATTGTTTCTCTCATGGTTCTTGGACGGACTTCGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT--TGGTTCTTGGACGAACTTCGGAACGTGCC
* *
14456633 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGTACGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAAC
14456680 ATCTGAACTT
Statistics
Matches: 97, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
60 19 0.20
61 6 0.06
62 72 0.74
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGACGAACTTCGGAACGTGCC
Found at i:14456896 original size:20 final size:20
Alignment explanation
Indices: 14456844--14456899 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14456834 TGGTCTTTAA
14456844 ATTATTATTAACTCAAAATG
1 ATTATTATTAACTCAAAATG
* ** * *
14456864 ATCAAAATCAACTCAAACTG
1 ATTATTATTAACTCAAAATG
14456884 ATTATTATTAACTCAA
1 ATTATTATTAACTCAA
14456900 GAGCAAATCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.34
Consensus pattern (20 bp):
ATTATTATTAACTCAAAATG
Found at i:14457764 original size:27 final size:27
Alignment explanation
Indices: 14457730--14457784 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
14457720 GTTTCTCTCT
* *
14457730 TGGTTCTTGCACGAACTTTCAAACTTG
1 TGGTTCTTGCACGAAATTCCAAACTTG
* *
14457757 TGGTTCTTGGATGAAATTCCAAACTTG
1 TGGTTCTTGCACGAAATTCCAAACTTG
14457784 T
1 T
14457785 CAAGAACTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
TGGTTCTTGCACGAAATTCCAAACTTG
Found at i:14457855 original size:62 final size:62
Alignment explanation
Indices: 14457778--14458037 Score: 378
Period size: 62 Copynumber: 4.2 Consensus size: 62
14457768 TGAAATTCCA
* * *
14457778 AACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTTGACAAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCG
* * * *
14457840 CACTTGTCAAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAA-TTCCA
1 AACTTGTCAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGA-CAAACATCCG
* *
14457903 AACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCG
* * * *
14457965 CACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCG
1 AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCG
14458027 AACTTGTCAAA
1 AACTTGTCAAA
14458038 CTTTTACGAT
Statistics
Matches: 175, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
61 3 0.02
62 118 0.67
63 51 0.29
64 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCG
Found at i:14457979 original size:125 final size:124
Alignment explanation
Indices: 14457757--14458036 Score: 490
Period size: 125 Copynumber: 2.2 Consensus size: 124
14457747 TTCAAACTTG
14457757 TGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGG
1 TGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGG
* *
14457822 TTCTTTGACAAACATCCGCACTTGTCAAAAACTTATTTACGTGAGAATTGTTTTCTCTCT
66 TTCTTGGACAAACATCCGCACTTGTCAAAAACTTATTTACGTAAGAATTG-TTTCTCTCT
14457882 TGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGG
1 TGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGG
14457947 TTCTTGGACAAACATCCGCACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
66 TTCTTGGACAAACATCCGCACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
* * *
14458006 TGGTTCTTAGACGAACA-TCCGAACTTGTCAA
1 TGGTTCTTGGATGAA-ATTCCAAACTTGTCAA
14458037 ACTTTTACGA
Statistics
Matches: 149, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
124 35 0.23
125 114 0.77
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (124 bp):
TGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTTATTTATGTGAGAATTGTTTCTCTCTTGG
TTCTTGGACAAACATCCGCACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
Found at i:14458288 original size:62 final size:62
Alignment explanation
Indices: 14458189--14458377 Score: 263
Period size: 62 Copynumber: 3.0 Consensus size: 62
14458179 TCCTTGAATT
* *
14458189 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTTCGAACTTGTC
* * * * * *
14458251 AAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTGGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTTCGAACTTGTC
* * *
14458313 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAAC-ATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTTC-GAACTTGTC
14458375 AAA
1 AAA
14458378 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
61 1 0.01
62 110 0.99
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGAACGAACTTTCGAACTTGTC
Found at i:14458494 original size:340 final size:340
Alignment explanation
Indices: 14457848--14458592 Score: 1100
Period size: 340 Copynumber: 2.2 Consensus size: 340
14457838 CGCACTTGTC
* * * *
14457848 AAAAACTTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-GTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
* * *
14457913 GAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAA
65 AAACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAA
*
14457978 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTT
** * * * *
14458043 ACGATTTCTTTTACAACTTCGGTTCCTGAAAGTATTCAGGATGATCCATTCTTTCGAGTAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* ** * * *
14458108 TCGAACGTTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAATAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14458173 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTAAATT
** *
14458189 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * **
14458254 AACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTGGAACTTGTCAAAAAC
66 AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
*
14458319 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTT-GTACGAACATCTGAACTTGTCAAACTTTT
131 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAG-ACGAACATCCGAACTTGTCAAACTTTT
** *
14458383 ACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTT
195 ACGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
* *
14458448 TCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
260 TCGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
*
14458513 TTTTGGTCTTTAAATT
325 TTTTGGTCCTTAAATT
* *
14458529 AAAAACTTATTTACGTGAGAATT-GTATCTC-CATGGTTCTTGGACGAACTTTCTAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
14458592 A
65 A
14458593 CTTTCACGAG
Statistics
Matches: 362, Mismatches: 40, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
339 33 0.09
340 305 0.84
341 24 0.07
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
AACTTATTTATGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTACAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CGAACATTCCATGCTCGAAAAATCCCATAAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14458685 original size:215 final size:214
Alignment explanation
Indices: 14458313--14458808 Score: 642
Period size: 215 Copynumber: 2.3 Consensus size: 214
14458303 GGAACTTGTC
* * *
14458313 AAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCT-AACTTGTCAAA
* * * * *
14458378 CTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
64 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * *
14458443 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
129 ATTTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
**
14458508 ACAAGTTTTGGTCT-TTAAATT
194 ACAAGTTTTGGAATGTT-AATT
*
14458529 AAAAACTTATTTACGTGAGAATTGTATCTC-CATGGTTCTTGGACGAACTTTCTAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTCAAA
** * *
14458593 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTT-TAAGC
64 CTTTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
*
14458657 AAA-TTTCC-AGACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTG
127 AAATTTTCCGA-ACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
14458720 TAAACAAGTTTTGGAATGTTAATT
191 TAAACAAGTTTTGGAATGTTAATT
* * ** * *
14458744 AATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTT-CTCTCTTGGTTCTTGGACGAAC-TTCTAACTTGTCAAA
14458809 AACTTATTTA
Statistics
Matches: 245, Mismatches: 27, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
214 3 0.01
215 177 0.72
216 65 0.27
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAAT
TTTCCGAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGAATGTTAATT
Found at i:14458844 original size:62 final size:62
Alignment explanation
Indices: 14458758--14458994 Score: 375
Period size: 62 Copynumber: 3.8 Consensus size: 62
14458748 ACTTAGTTGT
* *
14458758 GTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14458820 GTGAGAATTGTTTCTCTATTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14458882 GTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATATCCGAACTTGTCAAAAACTTATTTAC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
* * *
14458944 GTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14458995 CTTTTACGAT
Statistics
Matches: 158, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 158 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTAC
Found at i:14459244 original size:62 final size:62
Alignment explanation
Indices: 14459145--14459333 Score: 168
Period size: 62 Copynumber: 3.0 Consensus size: 62
14459135 TCGTTGAATT
* * * * *
14459145 AAAAACTTATTTACATGGGAATTCGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACATT-TG
1 AAAAACTTATTTACATGAGAATTCGTTCTCTCCTGGTTCTTGGACAAACTTTCAAAC-TTGTC
* *
14459207 AAAAACTTATTTATC-TGAGTATT-GTTCCTCTCCTGGTTCTTGGATAAACTTTCAAACTTGTC
1 AAAAACTTATTTA-CATGAGAATTCGTT-CTCTCCTGGTTCTTGGACAAACTTTCAAACTTGTC
* *** * ** * * * *
14459269 AAAAATTTATTTACGCAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTCGTTCTCTCCTGGTTCTTGGACAAACTTTCAAACTTGTC
14459331 AAA
1 AAA
14459334 CTTTTACGAT
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
61 6 0.06
62 94 0.91
63 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTCGTTCTCTCCTGGTTCTTGGACAAACTTTCAAACTTGTC
Found at i:14459272 original size:401 final size:401
Alignment explanation
Indices: 14458529--14459333 Score: 1021
Period size: 401 Copynumber: 2.0 Consensus size: 401
14458519 TCTTTAAATT
* * * * * *
14458529 AAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCTTGGACGAACTTTCTAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
* ** * *
14458594 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTTAAGCAA
66 TTTCACGAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTAAGCAA
* * * *
14458659 ATTTCCAGACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCTTTTTGTAAA
131 ATTTCCAGACATTCCATGCTCGAAAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
* ***
14458724 CAAGTTTTGGAATGTTAATTAATAACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCTCTCTTGGTTCTTGGAC
* * *
14458789 GAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGATGAA
261 GAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTCCTCTACTGGTTCTTGGATAAA
** * *
14458854 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTAGGACGAACAT
14458919 CCGAACTTGTC
391 CCGAACTTGTC
* *
14458930 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTC-CATAGTTCTTGGACAAACATCCAAACTTGTCAAA
* * * * * *
14458995 CTTTTACGATTTGTATTATAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATT-CTTTCGAGC
65 CTTTCACGAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTT-AAGC
* ** * * *
14459059 AATTTTTGA-ACATTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTA
129 AAATTTCCAGACATTCCATGCTCGAAAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTA
* * * *
14459123 AATAAGTTTT-G-TTCGTTGAATTAAAAACTTATTTACATGGGAATTCGTT-CTCTCTTGGTTCT
194 AACAAGTTTTGGAAT-GTT-AATTAAAAACTTAGTTACATGAGAATT-GTTCCTCTCTTGGTTCT
* * * * *
14459185 TGGACGAACTTTCGAACATT-TGAAAAACTTATTTATC-TGAGTATTGTTCCTCTCCTGGTTCTT
256 TGGACGAACATCCGAAC-TTGTCAAAAACTTATTTA-CGTGAGAATTGTTCCTCTACTGGTTCTT
* * * *
14459248 GGATAAACTTTCAAACTTGTCAAAAATTTATTTACGCAAGAATTCTTTCTCTTTTGGTTCTTGGA
319 GGATAAACTTCCAAACTTGTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTAGGA
14459313 CGAACATCCGAACTTGTC
384 CGAACATCCGAACTTGTC
14459331 AAA
1 AAA
14459334 CTTTTACGAT
Statistics
Matches: 344, Mismatches: 53, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
399 1 0.00
400 4 0.01
401 251 0.73
402 88 0.26
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCATAGTTCTTGGACAAACATCCAAACTTGTCAAAC
TTTCACGAGTTCTATTATAACTTAGGTTCCGGAAAGCATTCAAGACGATCCATTCCTTTAAGCAA
ATTTCCAGACATTCCATGCTCGAAAAATCACATAAATTGGCCAAAATAGTTTGTCGTTTTGTAAA
CAAGTTTTGGAATGTTAATTAAAAACTTAGTTACATGAGAATTGTTCCTCTCTTGGTTCTTGGAC
GAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTCCTCTACTGGTTCTTGGATAAA
CTTCCAAACTTGTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTAGGACGAACAT
CCGAACTTGTC
Found at i:14459673 original size:215 final size:217
Alignment explanation
Indices: 14459269--14459752 Score: 595
Period size: 215 Copynumber: 2.2 Consensus size: 217
14459259 CAAACTTGTC
* ** * * * * * *
14459269 AAAAATTTATTTACGCAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACCTGTCAAA
* * *
14459334 CTTTTACGATTTCTTGTATAACTTAGGTTCCAAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
66 CTTTCACGAGTTCTTGTATAACTTAGGTTCCAAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
* * * * * *
14459399 AATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTTTGTA
131 AATTTTCCAAACATTCAATGATCGGAAAATCACATCATTTAGTCAAAATAGTTTGTCATTTTGTA
*
14459464 AACAAGTTTTGGTCT-TTAAATT
196 AACAAGTTTTGGACTGTT-AATT
*
14459486 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACCTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACCTGTCAAA
* * ** * *
14459550 CTTTCACGAGTTCTTTTATAACTTAGGTTTC-TTAAAGTATTCAAGACGATTCATTCCTT-TGAG
66 CTTTCACGAGTTCTTGTATAACTTAGGTTCCAAAAAAGTATTCAAGACAATCCATTCCTTCT-AG
*
14459613 CAAA-TTTCCAAACATTCAATGATC-GAGAAATCACGTCA-TTAGGTCAAAATAGTTTGTCATTT
130 -AAATTTTCCAAACATTCAATGATCGGA-AAATCACATCATTTA-GTCAAAATAGTTTGTCATTT
14459675 TGTAAACAAGTTTTGGACTGTTAATT
192 TGTAAACAAGTTTTGGACTGTTAATT
* * * *
14459701 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT
14459753 TGAACTTGTC
Statistics
Matches: 229, Mismatches: 32, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
214 6 0.03
215 118 0.52
216 80 0.35
217 25 0.11
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACCTGTCAAA
CTTTCACGAGTTCTTGTATAACTTAGGTTCCAAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
AATTTTCCAAACATTCAATGATCGGAAAATCACATCATTTAGTCAAAATAGTTTGTCATTTTGTA
AACAAGTTTTGGACTGTTAATT
Found at i:14459726 original size:957 final size:957
Alignment explanation
Indices: 14457789--14460496 Score: 4278
Period size: 957 Copynumber: 2.8 Consensus size: 957
14457779 ACTTGTCAAG
* * * *
14457789 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTTGACAAACATCCGCACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAAC
* *
14457854 TTATTTACGTGAGAATTGTTTTCTCTCTTGGTTCTTGGATGAAATTCCAAACTTGTCAAGAACTT
66 TTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTT
* *
14457919 ATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGCACTTGTCAAAAACTTATT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAAACTTATT
*
14457984 TACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAACTTTTACGATT
195 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
* * * *
14458049 TCTTTTACAACTTCGGTTCCTGAAAGTATTCAGGATGATCCATTCTTTCGAGTAATTTTTCGAAC
260 TATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAAC
* *
14458114 GTTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGTTTTGG
325 ATTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGG
* **
14458179 TCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTCAACGAACTTTCGA
390 TCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * *
14458244 ACTTGTCAAAAACTTATTTATGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTGGAACT
455 ACTTGTCAAAAACTTATTTATCTGAGTATTGTTTCTCTCCTGGTTCTTGGACAAACTTTCGAACT
* * *
14458309 TGTCAAAAACTTATTTACGTAAGAATTGC-TTCTCTCTTGGTTCTTGTACGAACATCTGAACTTG
520 TGTCAAAAACTTATTTACGCAAGAATT-CTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
*
14458373 TCAAACTTTTACGATTTCTTTTGTAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
584 TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTC
*
14458438 TAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
649 TAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
*
14458503 TGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCATGGTTCT
714 TGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCT
* *
14458568 TGGACGAACTTTCTAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTAT
779 TGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTAT
* * * *
14458633 TCAAGACGATTCATTCCTTTAAGCAAATTTCCAGACATTCCATGCTCGAAAAATCACATCATTTG
844 TCAAGACGATTCATTCCTTTAAGCAAATTTCCAAACATTCAATGATCGAAAAATCACATCATTAG
*
14458698 GTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGAATGTTAATTAAT
909 GTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
* * *
14458747 AACTTAGTTGTGTGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAAC
*
14458812 TTATTTACGTGAGAATTGTTTCTCTATTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
* * *
14458877 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAATATCCGAACTTGTCAAAAACTTATTT
131 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAAACTTATTT
* * *
14458942 ACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACAAACATCCAAACTTGTCAAACTTTTACGATTT
196 ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
* * * * *
14459007 GTATTATAACTTCGGTTCCGGAAAGCATTCAAGATGATCCATTCTTTCGAGCAATTTTT-GAACA
261 ATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAACA
* * *
14459071 TTCCATGCTCGAGAAATCGCATAAATTGGCCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGTT
326 TTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGGT
* * *
14459136 CGTTGAATTAAAAACTTATTTACATGGGAATTCGTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
391 CCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
* * * *
14459201 CATT-TGAAAAACTTATTTATCTGAGTATTGTTCCTCTCCTGGTTCTTGGATAAACTTTCAAACT
456 C-TTGTCAAAAACTTATTTATCTGAGTATTGTTTCTCTCCTGGTTCTTGGACAAACTTTCGAACT
* *
14459265 TGTCAAAAATTTATTTACGCAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGT
520 TGTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
* *
14459330 CAAACTTTTACGATTTCTTGTATAACTTAGGTTCCAAAAAAGTATTCAAGATAATCCATTCCTTC
585 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCC-AAAAAGTATTCAAGATAATCCATTCCTTC
*
14459395 TAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTAGTCTAAATAGTTTGTCATTT
649 TAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTT
14459460 TGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCT
714 TGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCT
*
14459525 TGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTTCTTAAAGTAT
779 TGGACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTAT
* * *
14459590 TCAAGACGATTCATTCCTTTGAGCAAATTTCCAAACATTCAATGATCGAGAAATCACGTCATTAG
844 TCAAGACGATTCATTCCTTTAAGCAAATTTCCAAACATTCAATGATCGAAAAATCACATCATTAG
*
14459655 GTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
909 GTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
* * * **
14459704 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAAC
** * * *
14459769 TTATTTTTTGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTT
66 TTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTT
*
14459834 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATT
130 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAAACTTATT
* *
14459899 TACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATT
195 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATT
* *
14459964 TATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAAC
260 TATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAAC
* ** * *
14460029 ATTCCATGCTCGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGG
325 ATTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGG
*
14460094 TCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGA
390 TCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGA
* * *
14460159 ACTTGTCAAAAACTTATTTA-CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAAC-ATCTGAA
455 ACTTGTCAAAAACTTATTTATC-TGAGTATTGTTTCTCTCCTGGTTCTTGGACAAACTTTC-GAA
*
14460222 CTTGTCAAAAACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
518 CTTGTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
* * ** * * *
14460287 GTCAAACTTTTATGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTT
583 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTT
* * ** * *
14460352 CGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCGTAT-ATTTTGGTCTAAATAGTTTTTCGT
648 CTAGAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCA-TTTGGTCTAAATAGTTTGTCAT
* * *
14460416 TTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGT-TCTCTCTTGG
712 TTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGG
*
14460480 TTCTTGGACGAGCTTTC
775 TTCTTGGACGAACTTTC
14460497 GAACTTGTAA
Statistics
Matches: 1601, Mismatches: 138, Indels: 21
0.91 0.08 0.01
Matches are distributed among these distances:
955 1 0.00
956 268 0.17
957 603 0.38
958 441 0.28
959 288 0.18
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (957 bp):
AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAAAACTTATTT
ACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTT
ATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAACA
TTCCATGCTCGGGAAATCGCATAAATTGGTCTAAATAGTTTGTCGTTTTGTAAATAAGTTTTGGT
CCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAA
CTTGTCAAAAACTTATTTATCTGAGTATTGTTTCTCTCCTGGTTCTTGGACAAACTTTCGAACTT
GTCAAAAACTTATTTACGCAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
AAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTA
GAAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTG
TAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTG
GACGAACTTTCAAACCTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTC
AAGACGATTCATTCCTTTAAGCAAATTTCCAAACATTCAATGATCGAAAAATCACATCATTAGGT
CAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGAATGTTAATTAAT
Found at i:14459870 original size:62 final size:62
Alignment explanation
Indices: 14459704--14459952 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
14459694 GTTAATTAAT
* * * * **
14459704 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** * *
14459766 AACTTATTTTTTGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14459829 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
**
14459891 AACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14459953 CTTTTATGAT
Statistics
Matches: 168, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 114 0.68
63 54 0.32
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14460157 original size:340 final size:340
Alignment explanation
Indices: 14459779--14460570 Score: 1514
Period size: 340 Copynumber: 2.3 Consensus size: 340
14459769 TTATTTTTTG
14459779 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
1 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
14459844 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTACGCAAGAA
66 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTACGCAAGAA
14459909 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTATTTTATAA
131 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTATTTTATAA
14459974 CTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAACATTCCATGCT
196 CTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAACATTCCATGCT
14460039 CGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
261 CGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
14460104 AAAAACTTATTTACA
326 AAAAACTTATTTACA
14460119 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
1 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
14460184 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTACGCAAGAA
66 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTACGCAAGAA
14460249 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTATTTTATAA
131 TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTATTTTATAA
14460314 CTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAACATTCCATGCT
196 CTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAACATTCCATGCT
14460379 CGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
261 CGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
14460444 AAAAACTTATTTACA
326 AAAAACTTATTTACA
* * *
14460459 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAGCTTTCGAACTTGTAAAAAACTTATTTACGTGA
1 TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
* * *
14460524 GTATTGTTTCTCTCTTGGTTCATGGACGAACAT-TCGAACTTGTCAAA
66 GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCT-GAACTTGTCAAA
14460571 CTTTTACGAT
Statistics
Matches: 445, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
339 1 0.00
340 444 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (340 bp):
TGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTACGCAAGAA
TTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTATTTTATAA
CTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAATTTTTCGAACATTCCATGCT
CGGGAAATCGTATATTTTGGTCTAAATAGTTTTTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
AAAAACTTATTTACA
Found at i:14460201 original size:62 final size:62
Alignment explanation
Indices: 14460104--14460292 Score: 315
Period size: 62 Copynumber: 3.0 Consensus size: 62
14460094 TCCTTGAATT
* * *
14460104 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14460166 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
**
14460228 AAAAACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
14460290 AAA
1 AAA
14460293 CTTTTATGAT
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 118 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14460485 original size:278 final size:277
Alignment explanation
Indices: 14460166--14460780 Score: 851
Period size: 278 Copynumber: 2.2 Consensus size: 277
14460156 CGAACTTGTC
* *
14460166 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCT-GAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAAC-TCTCGAACTTGTAAA
*
14460230 AAACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
65 AAACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACT
* ** * * *
14460295 TTTATGATTTATTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATGCGTTCGAGAAAT
130 TTTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATGCCTTCGAGAAAA
** ** * *
14460360 TTTTCGAACATTCCATGCTCGGGAAATCGTA-TATTTTGGTCTAAATAGTTTTTCGTTTTGTAAA
195 TTTT-GAACATTCCATGCTCGAAAAATCCCATTA-TTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
14460424 CAAGTTTTGGTCCTTGAATT
258 CAAGTTTTGGTCCTTAAATT
* * * *
14460444 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAGCTTTCGAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTCTCGAACTTGTAAAA
** * *
14460509 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGTCAAACTT
66 AACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTT
* * * * **
14460574 TTACGATTTCTTTTATAGCTTCTGTTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGAAAAT
131 TTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATGCCTTCGAGAAAAT
*
14460639 TTTGAACATTCCATGCTCGAAAAATCCCATTATTTGGTTTAAATAGTTTGTCATTTTGTAAACAA
196 TTTGAACATTCCATGCTCGAAAAATCCCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
14460704 GTTTTGGTCTTTAAATT
261 GTTTTGGTCCTTAAATT
* * *
14460721 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGAAAAACTTTCAAACTTGT
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACAAACTCTCGAACTTGT
14460781 CACACTTTCA
Statistics
Matches: 297, Mismatches: 37, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
276 28 0.09
277 95 0.32
278 174 0.59
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.40
Consensus pattern (277 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTCTCGAACTTGTAAAA
AACTTATTTACGCAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTT
TTACGATTTATTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATGCCTTCGAGAAAAT
TTTGAACATTCCATGCTCGAAAAATCCCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGTCCTTAAATT
Found at i:14460514 original size:62 final size:62
Alignment explanation
Indices: 14460444--14460566 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 62
14460434 TCCTTGAATT
* * *
14460444 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAGCTTTCGAACTTGTA
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGTA
* * *
14460506 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGT
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGT
14460567 CAAACTTTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGTA
Found at i:14460900 original size:215 final size:216
Alignment explanation
Indices: 14460506--14460980 Score: 580
Period size: 215 Copynumber: 2.2 Consensus size: 216
14460496 CGAACTTGTA
* * ** *
14460506 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCATGGACGAACATTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATTCAAACTTGTCAAA
* * * * *** *
14460571 CTTTTACGATTTCTTTTATAGCTTCTGTTCCAAAAAGTATTCAAGATAATCCATTCCTTTTAGAA
66 CTTTCACGAGTTCTTCTATAACTAAGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTTGAGAA
** * * *** * *
14460636 AATTTTGAACATTCCATGCTCGAAAAATCCCATTATTTGGTTTAAATAGTTTGTCATTTTGTAAA
131 AATTTCAAACATTCCATGCTCGAAAAATCACATCATTTGGCCAAAATAGTTTATCATTTTGCAAA
*
14460701 CAAG-TTTTGGTCT-TTAAATT
196 CAAGTTTTTGGACTGTT-AATT
* * *
14460721 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGAAAAACTTTCAAACTTGTCACA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATTCAAACTTGTCAAA
* * * * *
14460785 CTTTCAGGAGTTCTTCTATAACTAAGGTTCCTTAAAA-TATTCAAGATGATCCATTGCTTTGAGC
66 CTTTCACGAGTTCTTCTATAACTAAGGTTCC-AAAAAGTATTCAAGATAATCCATTCCTTTGAGA
*
14460849 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGCCAAAATAGTTTATCATTTTGCA
130 AAATTT-CAAACATTCCATGCTCGAAAAATCACATCATTTGGCCAAAATAGTTTATCATTTTGCA
14460914 AACAAGTTTTTGGACTGTTAATT
194 AACAAGTTTTTGGACTGTTAATT
* * *
14460937 AATAACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
14460981 CGAACTTCTG
Statistics
Matches: 219, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
214 80 0.37
215 86 0.39
216 38 0.17
217 15 0.07
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAAAACATTCAAACTTGTCAAA
CTTTCACGAGTTCTTCTATAACTAAGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTTGAGAA
AATTTCAAACATTCCATGCTCGAAAAATCACATCATTTGGCCAAAATAGTTTATCATTTTGCAAA
CAAGTTTTTGGACTGTTAATT
Found at i:14461039 original size:62 final size:62
Alignment explanation
Indices: 14460940--14461177 Score: 266
Period size: 62 Copynumber: 4.0 Consensus size: 62
14460930 GTTAATTAAT
* *
14460940 AACTTAGTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* *
14461002 AACTTATTTATGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACTT-TCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAA
* * * * *
14461064 AACTTATTTATGTGAGAA---------T-TTGGTCCTTGGACGAACATCCGAACTTGTCAAG
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * *
14461116 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTC-AAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAA
14461178 CTTTTACGAT
Statistics
Matches: 147, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
52 42 0.29
53 1 0.01
61 2 0.01
62 100 0.68
63 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
Found at i:14461134 original size:52 final size:52
Alignment explanation
Indices: 14461037--14461135 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 52
14461027 TCTCTTGTTT
* * ** *
14461037 CTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTATGTGAGAATTTGGTC
1 CTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATTTGGTC
*
14461089 CTTGGACGAACATCCGAACTTGTCAAGAACTTATTTACATAAGAATT
1 CTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATT
14461136 GTTTCTCTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (52 bp):
CTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATTTGGTC
Found at i:14461171 original size:114 final size:114
Alignment explanation
Indices: 14460969--14461177 Score: 328
Period size: 114 Copynumber: 1.8 Consensus size: 114
14460959 TATTTCTCTC
* * * ** *
14460969 TTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
1 TTGGTCCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTG
* * *
14461034 TTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTATGTGAGAAT
66 GTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTATGTGAGAAT
*
14461083 TTGGTCCTTGGACGAACATCCGAACTTGTCAAGAACTTATTTACATAAGAATTGTTTCTCTCTTG
1 TTGGTCCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTG
14461148 GTTCTTGGACGAACATTCAAACTTGTCAAA
66 GTTCTTGGACGAACATTCAAACTTGTCAAA
14461178 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
114 85 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (114 bp):
TTGGTCCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTG
GTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTATGTGAGAAT
Found at i:14461426 original size:62 final size:63
Alignment explanation
Indices: 14461329--14461517 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 63
14461319 TCCTTGAATT
*
14461329 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAACTTGTC
*
14461391 AAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAA-TTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAACTTGTC
*
14461453 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTG-AACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAAACTTGTC
14461515 AAA
1 AAA
14461518 CTTTTACAAT
Statistics
Matches: 120, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
61 5 0.04
62 112 0.93
63 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (63 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAACTTGTC
Found at i:14461771 original size:214 final size:216
Alignment explanation
Indices: 14461453--14461947 Score: 669
Period size: 214 Copynumber: 2.3 Consensus size: 216
14461443 CGAAATTGTC
*
14461453 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAA
* * * *
14461517 ACTTTTACAATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCT-AG
65 ACTTTCACAAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATT-CTTCTGAG
* * * * **
14461581 -AAATTTTTCAAACTTTTCATGCTCAAAAAATCCCATCATTTGGT-TTAATAGTTTGTCATTTTG
129 CAAA-TTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * *
14461644 TAAACAAGTTTTGGTCT-TTAAATT
193 TAAAAAACTTTTGGACTGTT-AATT
*
14461668 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * *
14461732 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACCATCCATTCTTTTGAGCA
66 CTTTCACAAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCTTCTGAGCA
* * *
14461797 AATTTCCAGACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
14461862 AAAACTTTTGGACTGTTAATT
196 AAAACTTTTGGACTGTTAATT
* * * *
14461883 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCTAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14461948 AACTTATTTA
Statistics
Matches: 246, Mismatches: 28, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
213 4 0.02
214 112 0.46
215 96 0.39
216 34 0.14
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACAAGTTCTTTTATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCTTCTGAGCA
AATTTCCAAACATTCCATGCTCAAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
AAAACTTTTGGACTGTTAATT
Found at i:14461967 original size:62 final size:62
Alignment explanation
Indices: 14461886--14462077 Score: 305
Period size: 62 Copynumber: 3.1 Consensus size: 62
14461876 GTTAATTAAT
* *
14461886 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCTAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCTAACTTGTCAAA
* * *
14461948 AACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAAGTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCTAACTTGTCAAA
* *
14462010 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACAT-CTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCT-AACTTGTCAAA
14462072 AACTTA
1 AACTTA
14462078 GGTAGGAATT
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 118 0.99
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCTAACTTGTCAAA
Found at i:14463650 original size:62 final size:62
Alignment explanation
Indices: 14463577--14463746 Score: 270
Period size: 62 Copynumber: 2.7 Consensus size: 62
14463567 TTTTGTATCA
*
14463577 AATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAAAACTTATTTACGAGAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAA-TATCCGAACTTGTCAAAAACTTATTTACGAAAG
* *
14463639 AATTGTTTCTCTCTTGGCTCTTGGATGAATATCCGAACTTGTCAAAAACTTATTTACGAAAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAAAACTTATTTACGAAAG
* * *
14463701 AATTGTTTCTCTCTTGGTTCTTGGACAAATATCCAAACCTGTCAAA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAA
14463747 CTTTTACGAT
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
61 1 0.01
62 98 0.99
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAATATCCGAACTTGTCAAAAACTTATTTACGAAAG
Found at i:14463995 original size:62 final size:62
Alignment explanation
Indices: 14463898--14464086 Score: 265
Period size: 62 Copynumber: 3.0 Consensus size: 62
14463888 TCCTTGAATT
* *
14463898 AAAAACTTATTTACGTGAGAATTGGTTCTCTCCTGGTTCTTCAACGAAATTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGAACGAAATTTCGAACTTGTC
* * *
14463960 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACG-AACTTCGAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGAACGAAATTTCG-AACTTGTC
* * * *
14464022 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGTACGAACATCT-GAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGAACGAA-ATTTCGAACTTGTC
14464084 AAA
1 AAA
14464087 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
61 6 0.05
62 103 0.91
63 2 0.02
64 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGAACGAAATTTCGAACTTGTC
Found at i:14464316 original size:175 final size:178
Alignment explanation
Indices: 14464022--14464354 Score: 439
Period size: 175 Copynumber: 1.9 Consensus size: 178
14464012 GAAACTTGTC
* * *
14464022 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGTACGAACATCTGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGTACGAACATCTAAACTTATCAAA
* * * *
14464087 CTTTTACGATTTCTTTTGTAACTTCAGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCT-AG-
66 CTTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTT-TGAGC
* *
14464150 AAATTTTTCGAACATTCCATGCTCG-GAAAATCCCATGCTCTTTAAATTA
130 AAA-TTTCCAAACATTCCATGCTCGAGAAAATCCCATGCTCTTTAAATTA
* *
14464199 AAAAACTTATTTACGTGAGAATT-TATCTC-CTTGGTTCTTAG-ACGAAC-TTTCAAACTTATCA
1 AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTT-GTACGAACATCT-AAACTTATCA
** *
14464260 AACTTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGA
64 AACTTTCACGAGTTCTTTTATAACTTCA-GTTCCAAAAAGTATTCAAGACAATCCATTCCTTTGA
14464324 GCAAATTTCCAAACATTCCATGCTCGAGAAA
128 GCAAATTTCCAAACATTCCATGCTCGAGAAA
14464355 TCACATCATT
Statistics
Matches: 136, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
174 4 0.03
175 97 0.71
176 13 0.10
177 22 0.16
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (178 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCTCTTGGTTCTTGTACGAACATCTAAACTTATCAAA
CTTTCACGAGTTCTTTTATAACTTCAGTTCCAAAAAGTATTCAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAAATCCCATGCTCTTTAAATTA
Found at i:14464513 original size:62 final size:62
Alignment explanation
Indices: 14464416--14464722 Score: 442
Period size: 62 Copynumber: 5.0 Consensus size: 62
14464406 GTTAATTAAT
* * * *
14464416 AACTTAGTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14464478 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14464540 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14464602 AAC---TTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATT-CGAACTTGACAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAA
* * * *
14464661 AACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14464723 CTTTTATGAT
Statistics
Matches: 222, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
59 51 0.23
60 2 0.01
61 1 0.00
62 168 0.76
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14464668 original size:121 final size:122
Alignment explanation
Indices: 14464428--14464722 Score: 434
Period size: 121 Copynumber: 2.4 Consensus size: 122
14464418 CTTAGTTATG
* * *
14464428 TGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATTTACGTGA
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAAAAC-T-TTTACGTGA
* *
14464493 GAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATTTACA
64 GAATTGTTTCTCTCTTAGTTATTGGACGAACTTCTGAACTTGACAAAAACTTATTTACA
*
14464552 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAAAAC-TTTACGTGAGA
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAAAACTTTTACGTGAGA
* **
14464616 ATTGTTTCTCTCTTGGTTATTGGACGAACATTC-GAACTTGACAAAAACTTATTTATG
66 ATTGTTTCTCTCTTAGTTATTGGACGAAC-TTCTGAACTTGACAAAAACTTATTTACA
* *
14464673 TAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACA-TCCGAACTTGTCAAA
1 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCCGAACTTGTCAAA
14464723 CTTTTATGAT
Statistics
Matches: 157, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
121 104 0.66
122 4 0.03
124 49 0.31
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (122 bp):
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCGAACTTGTCAAAAACTTTTACGTGAGA
ATTGTTTCTCTCTTAGTTATTGGACGAACTTCTGAACTTGACAAAAACTTATTTACA
Found at i:14464851 original size:461 final size:458
Alignment explanation
Indices: 14464199--14465062 Score: 1209
Period size: 461 Copynumber: 1.9 Consensus size: 458
14464189 CTTTAAATTA
* * * *
14464199 AAAAACTTATTTACGTGAGAATTTATCTCCTTGGTTCTTAGACGAACTTTCAAACTTATCAAACT
1 AAAAACTTATTTACGTAAGAATTTATCTCCTTGGTTCCTAGACGAACATCCAAACTTATCAAACT
* *
14464264 TTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAAA
66 TTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGTATTCAAGACGATCCATTCCTTTGAGCAAA
*
14464329 TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTTAAAATAGTTTGTCATTTTGTAAAC
131 TTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTTAAAATAGTTTGTCATTTTGTAAAC
* * * *
14464394 ACCTTTTGGA-CTGTTAATT-AATAACTTAGTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGA
196 AACTTTT-GACCT-TGAATTAAAT-ACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGA
14464457 CGAAC-TTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG
258 CGAACTTTC-GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACG
* * *
14464521 AACTTCTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-
322 AACATCCGAACTTGTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
14464585 ATTCCAAACTTGTCAAAAACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATTCG
387 AAT-CAAACTTGTCAAAAACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATTCG
14464650 AACTTGAC
451 AACTTGAC
* * * * *
14464658 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATT-TATCTC-CTTGGTTCCTAGACGAACATCCAAACTTATCAAA
* * * * *
14464723 CTTTTATGATTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATT-CTTTCGAGC
64 CTTTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGTATTCAAGACGATCCATTCCTTT-GAGC
** *** * * * **
14464787 GTATTTTTGAACATTCCATGCTTGGGAAATCGCATAATTTGGTCT-AAATAGTTTGTGTTTTTGT
128 AAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGT-TAAAATAGTTTGTCATTTTGT
* * *
14464851 AAACAAGTTTTGATCCTTGAATTAAATACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
192 AAACAACTTTTGA-CCTTGAATTAAATACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTG
* *
14464916 GACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGAC
256 GACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
* *
14464981 GAACATCCGAACTTTTCAAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
321 GAACATCCGAACTTGTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
14465046 CAATCGAACTTGTCAAA
386 CAATCAAACTTGTCAAA
14465063 CTTTTACGAT
Statistics
Matches: 353, Mismatches: 43, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
459 21 0.06
460 11 0.03
461 310 0.88
462 11 0.03
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (458 bp):
AAAAACTTATTTACGTAAGAATTTATCTCCTTGGTTCCTAGACGAACATCCAAACTTATCAAACT
TTCACGAGTTCTTTTATAACTTAGATTCCTAAAAGTATTCAAGACGATCCATTCCTTTGAGCAAA
TTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTTAAAATAGTTTGTCATTTTGTAAAC
AACTTTTGACCTTGAATTAAATACTTAGTTACGTGAGAATTGGTTCTCTCTTAGTTCTTGGACGA
ACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACA
TCCGAACTTGTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAATC
AAACTTGTCAAAAACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATTCGAACTT
GAC
Found at i:14464975 original size:62 final size:62
Alignment explanation
Indices: 14464878--14465062 Score: 307
Period size: 62 Copynumber: 3.0 Consensus size: 62
14464868 TGAATTAAAT
* *
14464878 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAA
* * *
14464940 ACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAA
* *
14465002 ACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAATCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
14465063 CTTTTACGAT
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 113 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAA
Found at i:14465173 original size:340 final size:337
Alignment explanation
Indices: 14464537--14465277 Score: 1040
Period size: 340 Copynumber: 2.2 Consensus size: 337
14464527 TGAACTTGTC
* * * * *
14464537 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
14464602 AACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATTCGAACTTGACAAAAACTTA
66 AACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGACAAAAACTTA
* *
14464667 TTTATGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAACTTTTATGA
131 TTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAACTTTTACGA
* * * **
14464732 TTTCTTTTATAACTTCGATTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCGTATTTTTGA
196 TTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTTTTGA
* * ** * * * **
14464797 ACATTCCATGCTTGGGAAATCGCATAATTTGGTCTAAATAGTTTGTGTTTTTGTAAACAAGTTTT
261 ACATTCCAAGCTCGAAAAATCCCATAAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
*
14464862 GATCCTTGAATT
326 GATCCTTAAATT
* *
14464874 AAATACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * **
14464939 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAAAAC
66 AAC---TTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGACAAAAAC
* *
14465004 TTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAAT-CGAACTTGTCAAACTTTT
128 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAAC-ATCCGAACTTGTCAAACTTTT
* *
14465068 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAG-AAATTT
192 ACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTT
*
14465132 TTCGAACATTCCAAGCTCGAAAAATCCCATCAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAA
257 TT-GAACATTCCAAGCTCGAAAAATCCCATAAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
14465197 GTTTTGGTCTTTAAATT
321 GTTTTGATCCTTAAATT
* * * *
14465214 AAAAACTTATTTTCGTGATAATT-ATATCTC-CATGGTTTTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGAT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14465277 A
65 A
14465278 CTTTCACGAG
Statistics
Matches: 357, Mismatches: 41, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
337 62 0.17
339 39 0.11
340 254 0.71
341 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (337 bp):
AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACATCCGAACTTGACAAAAACTTA
TTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACGAACATCCGAACTTGTCAAACTTTTACGA
TTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTTTTGA
ACATTCCAAGCTCGAAAAATCCCATAAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
GATCCTTAAATT
Found at i:14465416 original size:215 final size:216
Alignment explanation
Indices: 14464998--14465493 Score: 617
Period size: 215 Copynumber: 2.3 Consensus size: 216
14464988 CGAACTTTTC
* *
14464998 AAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAATCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
* * *
14465063 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTACTTCTAGAA
* * * * *
14465128 ATTTTTCGAACATTCCAAGCTCGAAAAATCCCATCAGTCGGTCTAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCAAGCTCGAAAAATCACATCAGTCGGTCGAAATAGTTTGTCATTTTATAA
**
14465193 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGCACTATT-AATT
* * * * * * *
14465214 AAAAACTTATTTTCGTGATAATTATATCTC-CATGGTTTTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
** *
14465278 CTTTCACGAGTTCTTTTATAAC-TCAGGTTCCTTAAAGTATTCAAGATGATCCATTACTT-TGAG
66 CTTTCACGAGTTCTTTTATAACTTC-GGTTCCAAAAAGTATTCAAGATAATCCATTACTTCT-AG
* * * * * *
14465341 CAAA-TTTCCAAACATTCCATGCTCGAGAAATTATATCATTTGGTCGAAATAGTTTGTCATTTTA
129 -AAATTTTCCAAACATTCCAAGCTCGAAAAATCACATCAGTCGGTCGAAATAGTTTGTCATTTTA
*
14465405 TAAATAAGTTTTGCACTATTAATT
193 TAAACAAGTTTTGCACTATTAATT
* * *
14465429 AATAACTTAGTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-ATTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTC-GAACTTGTCAA
14465493 A
65 A
14465494 AACTTATTTA
Statistics
Matches: 235, Mismatches: 39, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
214 3 0.01
215 175 0.74
216 57 0.24
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTACTTCTAGAA
ATTTTCCAAACATTCCAAGCTCGAAAAATCACATCAGTCGGTCGAAATAGTTTGTCATTTTATAA
ACAAGTTTTGCACTATTAATT
Found at i:14465529 original size:62 final size:62
Alignment explanation
Indices: 14465432--14465614 Score: 312
Period size: 62 Copynumber: 3.0 Consensus size: 62
14465422 ATTAATTAAT
* * * *
14465432 AACTTAGTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14465494 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14465556 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTTCCGAATTTGTC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14465615 TCTTGGTTCT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14465617 original size:32 final size:32
Alignment explanation
Indices: 14465581--14465646 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
14465571 GAATTGTTTC
*
14465581 TCTCTTGGTTCTAGGACGAACTTCCGAATTTG
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTG
*
14465613 TCTCTTGGTTCTAGGACGGACTTCCGAACTTG
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTG
14465645 TC
1 TC
14465647 AAAAACTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (32 bp):
TCTCTTGGTTCTAGGACGAACTTCCGAACTTG
Found at i:14465680 original size:94 final size:94
Alignment explanation
Indices: 14465519--14465708 Score: 308
Period size: 94 Copynumber: 2.0 Consensus size: 94
14465509 GAATTGTTTC
* * *
14465519 TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCT
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
* *
14465584 CTTGGTTCTAGGACGAACTTCCGAATTTG
66 CTTGGTTCTAGGACGAACATCCGAACTTG
*
14465613 TCTCTTGGTTCTAGGACGGACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
* *
14465678 CTTGGTTCTTGGATGAACATCCGAACTTG
66 CTTGGTTCTAGGACGAACATCCGAACTTG
14465707 TC
1 TC
14465709 AAAAACTTAT
Statistics
Matches: 88, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 88 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (94 bp):
TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
CTTGGTTCTAGGACGAACATCCGAACTTG
Found at i:14465757 original size:61 final size:62
Alignment explanation
Indices: 14465613--14465772 Score: 241
Period size: 62 Copynumber: 2.6 Consensus size: 62
14465603 TCCGAATTTG
* * *
14465613 TCTCTTGGTTCTAGGACGGACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATC
1 TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATC
* * * *
14465675 TCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAACTTATTTATGT-AGAATTGTTTC
1 TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATC
*
14465736 TCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAAA
1 TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14465773 CTTTTATGGT
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 44 0.49
62 45 0.51
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (62 bp):
TCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATC
Found at i:14466107 original size:216 final size:216
Alignment explanation
Indices: 14465709--14466204 Score: 590
Period size: 216 Copynumber: 2.3 Consensus size: 216
14465699 CGAACTTGTC
* * *
14465709 AAAAACTTATTTATGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACGTGTCAAA
* * * * * *
14465773 CTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTCACGATTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGAA
* * * * * * * * *
14465838 ATTTTTCGAACATTCCATGCTCGGGAAATCGCTTAATTTGGTCTAAGTAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCGATTAATTTGATCAAAATAGTTTGTCATTTTATAA
*
14465903 ACAAGTTTTTGGTCT-TTAAATT
196 ACAAG-TTTTGGACTGTT-AATT
* ** * * *
14465925 AAAAACTTATTTACGTGAGAATTGTATCTC-CCTGGTTCTTGGACAAAGTTTCTAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACGTGTCAAA
*
14465989 CTTTCACGATTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GAGA
66 CTTTCACGATTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATT-CTTTCGAGA
* *
14466053 AAATTTCCAAACATTCCATGCTCGAGAAAT-TATATCATTTGATCAAAATAGTTTGTCATTTTAT
130 AAATTTCCAAACATTCCATGCTCGAGAAATCGAT-TAATTTGATCAAAATAGTTTGTCATTTTAT
14466117 AAACAAGTTTTGGACTGTTAATT
194 AAACAAGTTTTGGACTGTTAATT
* * * * * * *
14466140 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAC-TCCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACAT-CCGAACGTGTCAA
14466204 A
65 A
14466205 AACTTATTTA
Statistics
Matches: 236, Mismatches: 38, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
215 41 0.17
216 179 0.76
217 16 0.07
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCCTGGTTCTTGGACAAACATCCGAACGTGTCAAA
CTTTCACGATTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGAA
AATTTCCAAACATTCCATGCTCGAGAAATCGATTAATTTGATCAAAATAGTTTGTCATTTTATAA
ACAAGTTTTGGACTGTTAATT
Done.