Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 68 of 144
Found at i:14466242 original size:62 final size:60
Alignment explanation
Indices: 14466143--14466328 Score: 248
Period size: 62 Copynumber: 3.0 Consensus size: 60
14466133 GTTAATTAAT
*
14466143 AACTTAGTTACGTGAGAATTGTTTCTCTCTT-AGTTCTTAGACGAACTCCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGA-TTCTT-GACGAACT-CCGAACTTGTCAAA
* * *
14466205 AACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTG-ACGAAC-TCCGAACTTGTCAAA
* *
14466267 AACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTT-GACGAAC-TCCGAACTTGTCAAA
14466329 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
61 1 0.01
62 106 0.96
63 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (60 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGACGAACTCCGAACTTGTCAAA
Found at i:14466264 original size:711 final size:711
Alignment explanation
Indices: 14464902--14466325 Score: 2276
Period size: 711 Copynumber: 2.0 Consensus size: 711
14464892 GAATTGGTTC
* * * * *
14464902 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCT
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
*
14464967 CTTGGTTCTTGGACGAACATCCGAACTTTTCAAAAACTTATTTACGTCAGAATTGTTTCTCTCTT
66 CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTCAGAATTGTTTCTCTCTT
*
14465032 GGTTCTTGGACGAACAATCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
131 GGTTCTTGGACGAACAATCGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
*
14465097 AAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCAAGCTCGAAAAATCCCAT
196 AAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCAAGCTCGAAAAATCCCAT
* *
14465162 CAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTT
261 AAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
* * *
14465227 CGTGATAATTATATCTCCATGGTTTTTGGACGAACTTTCGAACTTGTCAAACTTTCACGAGTTCT
326 CGTGAGAATTATATCTCCATGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTCACGAGTTCT
* *
14465292 TTTATAACTCAGGTTCCTTAAAGTATTCAAGATGATCCATTACTTTGAGCAAATTTCCAAACATT
391 TTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTGAGAAAATTTCCAAACATT
* * *
14465357 CCATGCTCGAGAAATTATATCATTTGGTCGAAATAGTTTGTCATTTTATAAATAAGTTTTGCACT
456 CCATGCTCGAGAAATTATATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGCACT
* * * *
14465422 ATTAATTAATAACTTAGTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAATTCTGAACT
521 ATTAATTAATAACTTAGTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAATCCCGAACT
* * *
14465487 TGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGT
586 TGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGT
* * *
14465552 CAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAACTTCCGAATTTG
651 CAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAACTTG
*
14465613 TCTCTTGGTTCTAGGACGGACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
1 TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
* *
14465678 CTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAACTTATTTATGT-AGAATTGTTTCTCTCTT
66 CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTCAGAATTGTTTCTCTCTT
* * **
14465742 GGTTCTTGGACGAAC-ATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTG
131 GGTTCTTGGACGAACAAT-CGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
* * * * ** * *
14465806 AAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCT
195 AAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCAAGCTCGAAAAATCCCA
* * *
14465871 TAATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAAGTTTTTGGTCTTTAAATTAAAAACTTATT
260 TAAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTAAATTAAAAACTTATT
* * * * *
14465936 TACGTGAGAATTGTATCTCCCTGGTTCTTGGACAAAGTTTCTAACTTGTCAAACTTTCACGATTT
324 TACGTGAGAATTATATCTCCATGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTCACGAGTT
* *
14466001 CTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACA
389 CTTTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTGAGAAAATTTCCAAACA
*
14466066 TTCCATGCTCGAGAAATTATATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGGA
454 TTCCATGCTCGAGAAATTATATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGCA
* * *
14466131 CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAA
519 CTATTAATTAATAACTTAGTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAATCCCGAA
* *
14466196 CTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTT
584 CTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACTTCCAAACTT
*
14466261 GTCAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
649 GTCAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAACTTG
14466324 TC
1 TC
14466326 AAACTTTTAC
Statistics
Matches: 651, Mismatches: 60, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
709 2 0.00
710 162 0.25
711 487 0.75
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (711 bp):
TCTCTTGGTTCTAGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
CTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTCAGAATTGTTTCTCTCTT
GGTTCTTGGACGAACAATCGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
AAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACATTCCAAGCTCGAAAAATCCCAT
AAGTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
CGTGAGAATTATATCTCCATGGTTCTTGGACAAACTTTCGAACTTGTCAAACTTTCACGAGTTCT
TTTATAACTCAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTGAGAAAATTTCCAAACATT
CCATGCTCGAGAAATTATATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGCACT
ATTAATTAATAACTTAGTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAAATCCCGAACT
TGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAACTTCCAAACTTGT
CAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTAGGACGAACATCCGAACTTG
Found at i:14466593 original size:340 final size:339
Alignment explanation
Indices: 14465925--14466882 Score: 1221
Period size: 340 Copynumber: 2.8 Consensus size: 339
14465915 TCTTTAAATT
* * * ** * *
14465925 AAAAACTTATTTACGTGAGAATTGTATCTC-CCTGGTTCTTGGACAAAGTTTCTAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
14465989 CTTTCACGATTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGAA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTTGAG-A
* ** * * *
14466054 AATTTCCAAACATTCCATGCTCGAGAAATTAT-ATCATTT-GATCAAAATAGTTTGTCATTTTAT
130 ATTTTTTAAACATTCCATGCTCGGGAAATT-TCATCATTTGGA-CTAAATAGTTTGTCATTTTGT
* * * * * *
14466117 AAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
193 AAACAAGTTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
* ** *
14466181 AGACGAACTCCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTA
257 GGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGA
*
14466246 TGAACTTCCAAACTTGTC
322 CGAACTTCCAAACTTGTC
*
14466264 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14466329 CTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTTGAGCA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTTGAG-A
* * *
14466394 ATTTTTTGAACATTCCATGCTCGGGAAATTTCATAATTTGGACTAAATAGTTTGTCTTTTTGTAA
130 ATTTTTTAAACATTCCATGCTCGGGAAATTTCATCATTTGGACTAAATAGTTTGTCATTTTGTAA
*
14466459 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * * * *
14466524 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTTAGTATTGTTTCTCTCTTGCTTCTTGGACGA
260 CGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGA
*
14466589 ACTTCCGAACTTGTC
325 ACTTCCAAACTTGTC
* * * * * *
14466604 CAAAACTTA-TTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGTACGAACAGCCGAACTTGTCTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14466668 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCGTTCCTTCT-AGA
66 CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATT-CTTTTGAGA
* * * ** *
14466732 ATTTTTTCTAACATTTCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 ATTTTTT-AAACATTCCATGCTCGGGAAATTTCATCATTTGGACTAAATAGTTTGTCATTTTGTA
*
14466797 AACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTG
194 AACAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTG
* *
14466860 GATGAACTTTTGAACTTGTCAAA
258 GACGAACTTTCGAACTTGTCAAA
14466883 CTTTCACTAG
Statistics
Matches: 541, Mismatches: 71, Indels: 15
0.86 0.11 0.02
Matches are distributed among these distances:
338 41 0.08
339 225 0.42
340 271 0.50
341 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTTGAGAA
TTTTTTAAACATTCCATGCTCGGGAAATTTCATCATTTGGACTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGACGAA
CTTCCAAACTTGTC
Found at i:14466658 original size:61 final size:62
Alignment explanation
Indices: 14466480--14466664 Score: 255
Period size: 62 Copynumber: 3.0 Consensus size: 62
14466470 TCCTTGAATT
* * * *
14466480 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14466542 AAAAACTTATTTACGTTAGTATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * **
14466604 CAAAACTTA-TTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGTACGAACAGCCGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14466665 TAACTTTTAC
Statistics
Matches: 109, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
61 45 0.41
62 64 0.59
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14467146 original size:62 final size:62
Alignment explanation
Indices: 14467043--14467220 Score: 279
Period size: 62 Copynumber: 2.9 Consensus size: 62
14467033 AATAACCTAG
* *
14467043 TTACGTGAGAATTATTTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
14467105 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AGACTTCCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCGAACTTGTCAAAAACTTAT
* * * *
14467167 TTA-ATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14467221 CTTTTACGGT
Statistics
Matches: 108, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
61 46 0.43
62 62 0.57
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
Found at i:14467356 original size:553 final size:554
Alignment explanation
Indices: 14466264--14467430 Score: 1569
Period size: 553 Copynumber: 2.1 Consensus size: 554
14466254 CAAACTTGTC
* * *
14466264 AAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * ** * *
14466329 CTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTTGAGCA
65 CTTTCACGATTACTTATATAACTTAGCTTCCTGAAAGCATTCAAGACGATCCATTCCTTTGAGCA
* *** * ** *
14466394 ATTTTTTGAACATTCCATGCTCGGGAAATTTCATAATTTGGACTAAATAGTTTGTCTTTTTGTAA
130 AATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGACAAAATAGTTTGTCTTTTTGTAA
* * * *
14466459 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
195 ACAAGTTTTGGTACTTGAATTAAAAACCTAGTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGA
* * *
14466524 CGAACTTTCAAACTTGTCAAAAACTTATTTACGTTAGTATTGTTTCTCTCTTGCTTCTTGGACGA
260 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGA
* *
14466589 ACTTCCGAACTTGTCCAAAACTTATTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGTACGAACAG
325 ACTTCCGAACTTGTCAAAAACTTATTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAG
* * *
14466654 CCGAACTTGTCTAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATC
390 CCGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGATAATC
* * * * *
14466719 CGTTCCTTCTAGAATTTTTTCTAACATTTCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGT
455 CATTCCTTCGAGAATTTTTTCAAACATTCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGT
*
14466784 TTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
520 TTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
* *
14466819 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
14466883 CTTTCACTAGTTA-TTTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGC
65 CTTTCACGA-TTACTTATATAACTTAGCTTCCTGAAAGCATTCAAGACGATCCATTCCTTTGAGC
* * ** *
14466947 AAATTTCCAAACTTTTCATGCTCGAGAAATCACATCGTTTGGTCAAAATAG-TTGT-TATTTTGT
129 AAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGACAAAATAGTTTGTCT-TTTTGT
* * * * *
14467010 AAACGAGTTTTGG-ACTGTTAATTAATAACCTAGTTACGTGAGAATTATTTTTCTCTTGGTTCTT
193 AAACAAGTTTTGGTACT-TGAATTAAAAACCTAGTTACGTGAGAATTAGTTCTCTCTTGGTTCTT
* *
14467074 GGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
257 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGA
*
14467139 C-AGACTTCCGAACTTGTCAAAAACTTATTTAA-TTAGAATTGTTTCTCTCTTGGTTCTTGGACG
322 CGA-ACTTCCGAACTTGTCAAAAACTTA-TTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
** * **
14467202 AACCTCCGAACGTGTCAAACTTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGA
385 AACAGCCGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGA
* * * * *
14467267 TGATTCATTCTTTCGAGCAA-TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCT-GTCT
450 TAATCCATTCCTTCGAG-AATTTTTTCAAACATTCCATGCTCGGAAAATCCCATAATT-TGGTCT
* * *
14467330 AAATAGTTTGTCTTTTTGTGAACAAGTTTTGGTCCTTGAATT
513 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
*
14467372 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT
14467431 CTCGAAAACT
Statistics
Matches: 532, Mismatches: 70, Indels: 21
0.85 0.11 0.03
Matches are distributed among these distances:
552 4 0.01
553 344 0.65
554 154 0.29
555 30 0.06
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGATTACTTATATAACTTAGCTTCCTGAAAGCATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGACAAAATAGTTTGTCTTTTTGTAAA
CAAGTTTTGGTACTTGAATTAAAAACCTAGTTACGTGAGAATTAGTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAA
CTTCCGAACTTGTCAAAAACTTATTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAGC
CGAACGTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGCATTCAAGATAATCC
ATTCCTTCGAGAATTTTTTCAAACATTCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:14467401 original size:892 final size:895
Alignment explanation
Indices: 14465613--14467772 Score: 3325
Period size: 892 Copynumber: 2.4 Consensus size: 895
14465603 TCCGAATTTG
* * * * * *
14465613 TCTCTTGGTTCTAGGACGGACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATATCTCT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCT
* * *
14465678 CTTGGTTCTTGGATGAACATCCGAACTTGTCAAAAACTTATTTATGTAGAATTGTTTCTCTCTTG
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAGAATTGTTTCTCTCTTG
14465743 GTTCTTGGACGAACATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAA
131 GTTCTTGGACGAACATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAA
*
14465808 AGTATTCAAGATGATCCATTCTTTCGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCTT
196 AGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTTCGAACATTCCATGCTCGGGAAATCGCAT
*
14465872 AATTTGGTCTAAGTAGTTTGTCATTTTGTAAACAAGTTTTTGGTCTTTAAATTAAAAACTTATTT
261 AATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG-TTTTGGTCTTTAAATTAAAAACTTATTT
* * *
14465937 ACGTGAGAATTGTATCTCCCTGGTTCTTGGACAAAGTTTCT-AACTTGTCAAACTTTCACGATTT
325 ACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTT-TGAACTTGTCAAACTTTCACGAGTT
* * *
14466001 CTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACA
389 ATTTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACA
* *
14466066 TTCCATGCTCGAGAAATTATATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGGA
454 TTCCATGCTCGAGAAATCACATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGGA
* *
14466131 CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTAGACGAACTCCCGAA
519 CTGTTAATTAATAACCTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGACGAACTCCCGAA
* *
14466196 CTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGTATGAACTTCCAAACTT
584 CTTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGAAGAACTTCCAAACTT
* *
14466261 GTCAAAAACTAATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
649 GTCAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTC
** *
14466326 AAACTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTTGA
714 AAACTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCTTTCGA
** **
14466391 GCAATTTTTTGAACATTCCATGCTCGGGAAATTTCATAATTTGGACTAAATAGTTTGTCTTTTTG
779 GCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGACTAAATAGTTTGTCTTTTTG
*
14466456 TAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTC
844 TAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTC
* *
14466508 TCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACGTTAGTATTGTTTCTCT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCT
* *
14466573 CTTGCTTCTTGGACGAACTTCCGAACTTGTCCAAAACTTA-TTAAGTAAGAATTGTTTCTCTCTT
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGT-AGAATTGTTTCTCTCTT
* * * * * * **
14466637 GGTTCTTGTACGAACAGCCGAACTTGTCTAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAA
130 GGTTCTTGGACGAACATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGA
* * * * * * * *
14466702 AAGTATTCAAGATAATCCGTTCCTTCTAG-AATTTTTTCTAACATTTCATGCTCGGAAAATCCCA
195 AAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTTCGAACATTCCATGCTCGGGAAATCGCA
*
14466766 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
260 TAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
** *
14466831 ACGTGAGAATTGTATCTCCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAACTTTCACTAGTTA
325 ACGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTCACGAGTTA
* *
14466896 TTTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGCAAATTTCCAAACTT
390 TTTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACAT
* * * * * *
14466961 TTCATGCTCGAGAAATCACATCGTTTGGTCAAAATAG-TTGTTATTTTGTAAACGAGTTTTGGAC
455 TCCATGCTCGAGAAATCACATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGGAC
* * * *
14467025 TGTTAATTAATAACCTAGTTACGTGAGAATTATTTTTCTCTTGGTTCTTGGACGAACTTCCGAAC
520 TGTTAATTAATAACCTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGACGAACTCCCGAAC
* * *
14467090 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAG-ACTTCCGAACTT
585 TTGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGA-AGAACTTCCAAACTT
* * *
14467154 GTCAAAAACTTATTTA-ATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTC
649 GTCAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTC
* * * *
14467218 AAACTTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATTCTTTCGA
714 AAACTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCTTTCGA
*
14467283 GCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCT-GTCTAAATAGTTTGTCTTTTT
779 GCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATT-TGGACTAAATAGTTTGTCTTTTT
*
14467347 GTGAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTC
843 GTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTC
* *
14467400 TCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCGAAAACTTATTTACGTGAGTATTGTTTCTCT
1 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCT
* *
14467465 CTTGGTTCTTGTACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAGAATTGTTTCTCTCTTG
66 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAGAATTGTTTCTCTCTTG
*
14467530 GTTCTTGGACGAACCTCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAA
131 GTTCTTGGACGAACATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAA
*
14467595 AGTATTCAAGATGATTCATTCTTTCGAGCAATTTTTT-GAACATTCCATGCTCGGGAAATCGCAT
196 AGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTTCGAACATTCCATGCTCGGGAAATCGCAT
** * *
14467659 AATTCT-GTCTAAATAGTTTGTTTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTT
261 AATT-TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTT
** *
14467723 ATATGAGAATTGGT-TCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
325 ACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACAAACTTTTGAACTTGTC
14467773 GAAAACTTAT
Statistics
Matches: 1138, Mismatches: 117, Indels: 22
0.89 0.09 0.02
Matches are distributed among these distances:
892 498 0.44
893 201 0.18
894 185 0.16
895 254 0.22
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (895 bp):
TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCT
CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTAAGTAGAATTGTTTCTCTCTTG
GTTCTTGGACGAACATCCGAACGTGTCAAACTTTTATGGTTTCTTTTATAACTTCGGTTCCTGAA
AGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTTCGAACATTCCATGCTCGGGAAATCGCAT
AATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTA
CGTGAGAATTGTATCTCCTTGGTTCTTGGACAAACTTTTGAACTTGTCAAACTTTCACGAGTTAT
TTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTTGAGAAAATTTCCAAACATT
CCATGCTCGAGAAATCACATCATTTGATCAAAATAGTTTGTCATTTTATAAACAAGTTTTGGACT
GTTAATTAATAACCTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTAGACGAACTCCCGAACT
TGTCAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGATTCTTGGAAGAACTTCCAAACTTGT
CAAAAACTAATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACGTGTCAA
ACTTTTACGATTACTTATATAACTTCGGTTCCTGAAAGCATTCAAGATGATCCATTCTTTCGAGC
AATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGACTAAATAGTTTGTCTTTTTGTA
AACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTC
Found at i:14467466 original size:339 final size:338
Alignment explanation
Indices: 14466819--14467846 Score: 1462
Period size: 339 Copynumber: 3.0 Consensus size: 338
14466809 TCTTTAAATT
* * * * * ** *
14466819 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTA-ATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAA
* * * * * * * *
14466883 CTTTCACTAG-TTATTTTATAACTTAGCTTCCTTAAAGCATTCAAGACGATCCATTCCTTT-GAG
65 CTTTTAC-GGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATT-CTTTCGAG
* * * * * * ** *
14466946 CAAATTTCCAAACTTTTCATGCTCGAGAAATCACATCGTT-TGGTCAAAATAG-TTGTTATTTTG
128 CAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCT-GTCTAAATAGTTTGTT-TTTTG
* * * * * * * ** *
14467009 TAAACGAGTTTTGG-ACTGTTAATTAATAACCTAGTTACGTGAGAATTATTTTTCTCTTGGTTCT
191 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCT
* * * *
14467073 TGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
255 TGGACGAACTTTCGAACTTGTCGAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGT
14467138 AC-AGACTTCCGAACTTGTC
320 ACGA-ACTTCCGAACTTGTC
14467157 AAAAACTTATTTAATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAAC
1 AAAAACTTATTTAATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAAC
14467222 TTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATTCTTTCGAGCAA
66 TTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATTCTTTCGAGCAA
*
14467287 TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCTGTCTAAATAGTTTGTCTTTTTGTGAA
131 TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCTGTCTAAATAGTTTGT-TTTTTGTAAA
14467352 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGAC
195 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGAC
*
14467417 GAACTTTCGAACTTCTCGAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAA
260 GAACTTTCGAACTTGTCGAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAA
14467482 CTTCCGAACTTGTC
325 CTTCCGAACTTGTC
**
14467496 AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAAC
1 AAAAACTTATTTAATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAAC
* *
14467561 TTTTATGGTTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATTCATTCTTTCGAGCAA
66 TTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATTCTTTCGAGCAA
**
14467626 TTTTTTGAACATTCCATGCTCGGGAAATCGCATAATTCTGTCTAAATAGTTTGTTTTTTTGTAAA
131 TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCTGTCTAAATAGTTTG-TTTTTTGTAAA
*
14467691 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTATATGAGAATTGGTTCTCTCTTGGTTCTTGGAC
195 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGAC
*
14467756 AAACTTTCGAACTTGTCGAAAACTTATTTACGTGAGTATTG-TT-TCTCTTGGTTCTTGTACGAA
260 GAACTTTCGAACTTGTCGAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAA
*
14467819 CTTCGGAACTTGTC
325 CTTCCGAACTTGTC
14467833 AAAAACTTATTTAA
1 AAAAACTTATTTAA
14467847 GTAAGAATAG
Statistics
Matches: 628, Mismatches: 53, Indels: 19
0.90 0.08 0.03
Matches are distributed among these distances:
337 64 0.10
338 133 0.21
339 426 0.68
340 5 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (338 bp):
AAAAACTTATTTAATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTCAAAC
TTTTACGGTTTCTTTTATAACTTCGGTTCCTGAAAGCATTCAAGATGATTCATTCTTTCGAGCAA
TTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTCTGTCTAAATAGTTTGTTTTTTGTAAAC
AAGTTTTGGTCCTTGAATTAAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACG
AACTTTCGAACTTGTCGAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAAC
TTCCGAACTTGTC
Found at i:14467549 original size:61 final size:62
Alignment explanation
Indices: 14467372--14467559 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
14467362 TCCTTGAATT
* * * *
14467372 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14467434 GAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGTACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14467496 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCCGAACGTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14467557 AAA
1 AAA
14467560 CTTTTATGGT
Statistics
Matches: 114, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
61 44 0.39
62 70 0.61
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14467821 original size:60 final size:62
Alignment explanation
Indices: 14467711--14467845 Score: 186
Period size: 60 Copynumber: 2.2 Consensus size: 62
14467701 TCCTTGAATT
*
14467711 AAAAACTTATTTATATGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTC-GAACTTGTC
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACAAAC-TTCGGAACTTGTC
* * * * *
14467773 GAAAACTTATTTACGTGAGTATT-GTT-TCTCTTGGTTCTTGTACGAACTTCGGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTCGGAACTTGTC
14467833 AAAAACTTATTTA
1 AAAAACTTATTTA
14467846 AGTAAGAATA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
59 3 0.05
60 40 0.62
61 3 0.05
62 19 0.29
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTCGGAACTTGTC
Found at i:14468447 original size:62 final size:62
Alignment explanation
Indices: 14468240--14468434 Score: 354
Period size: 62 Copynumber: 3.1 Consensus size: 62
14468230 GTTAATTAAT
*
14468240 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14468302 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCCAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
14468364 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14468426 AACTTATTT
1 AACTTATTT
14468435 GGGTAAGAAT
Statistics
Matches: 127, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 127 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14470257 original size:62 final size:63
Alignment explanation
Indices: 14470089--14470276 Score: 260
Period size: 62 Copynumber: 3.0 Consensus size: 63
14470079 TCCTTGAATT
* * * *
14470089 AAAAACTTATTTA--TATGAGAATTGGTTCTCTCTTGGTTCCTGGACGAACTTTCGAACTTCTC
1 AAAAACTTATTTACGTA-GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14470151 AAAAACTTA-TTACGT-GAGTATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14470212 AAAAACTTATTTACGTAGA-AATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14470274 AAA
1 AAA
14470277 CTTTTACGAT
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
61 52 0.46
62 57 0.51
63 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (63 bp):
AAAAACTTATTTACGTAGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14470614 original size:215 final size:216
Alignment explanation
Indices: 14470212--14470707 Score: 662
Period size: 215 Copynumber: 2.3 Consensus size: 216
14470202 CGAACTTGTC
* * *
14470212 AAAAACTTATTTACGT-AGAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAA
* * * * * *
14470276 ACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATTCATTCCTTCTAGA
65 ACTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGA
* * * * * *
14470341 AATTTTTCGAACATTCCATGCCCGAAAAATCCCATCATTTGTTCTAAATAGTTTGTCATTTTGTA
130 AATTTTCCAAACAATCCATGCCCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
*
14470406 AA-CAACTTTTGGTCT-TTAAATT
195 AACCAA-TTTTGGACTGTT-AATT
* * **
14470428 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATTAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
**
14470492 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* *
14470556 AAA-TTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
129 AAATTTTCCAAACAATCCATGCCCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
14470620 AAACCAATTTTGGACTGTTAATT
194 AAACCAATTTTGGACTGTTAATT
* * *
14470643 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
14470708 AACTTATTTA
Statistics
Matches: 243, Mismatches: 31, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
214 1 0.00
215 177 0.73
216 63 0.26
217 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTCATAACTTAGGTTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
ATTTTCCAAACAATCCATGCCCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACCAATTTTGGACTGTTAATT
Found at i:14470743 original size:62 final size:62
Alignment explanation
Indices: 14470646--14470893 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
14470636 GTTAATTAAT
* * *
14470646 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
14470708 AACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGAC-AGGCTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA-ACATCCAAACTTGTCAAA
* * *
14470770 AACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
14470832 AACTTATTTACGTAATAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14470894 CTTTTATGAT
Statistics
Matches: 170, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
61 1 0.01
62 168 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14471112 original size:340 final size:340
Alignment explanation
Indices: 14470705--14471448 Score: 1116
Period size: 340 Copynumber: 2.2 Consensus size: 340
14470695 CAAACTTGTC
* * * *
14470705 AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGAC-AGGCTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA-ACTTTCAAACTTGTCAA
* * * * *
14470769 AAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACATCCGAACTTGTCAAAAA
65 AAACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCATAGACGAACATCCCAACTTGTCAAAAA
*
14470834 CTTATTTACGTAATAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* * *** * * *
14470899 ATGATTTCTTTTATAACTTTTGTTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTT
195 ACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTT
** ** * *
14470964 TCAAACATTCCATGCTCGGGAAATGGCAAAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
260 TCAAACATTCCATGCTCGAAAAATCCCAAAATTTGGTATAAATAGTTTGTCATTTTGTAAACAAG
*
14471029 TTTTGGTCCTTGAATT
325 TTTTGGTCCTTAAATT
14471045 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * *
14471110 AACTTAGTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGAACTTCCCAACTTGTCAAAAAC
66 AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCATAGACGAACATCCCAACTTGTCAAAAAC
* * *
14471175 TTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
131 TTATTTACGTAAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
*
14471240 CGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
196 CGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
* **
14471305 CGAACATTCCATGCTCGAAAAATCCCATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGT
261 CAAACATTCCATGCTCGAAAAATCCCAAAATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGT
*
14471370 TTTGGTCTTTAAATT
326 TTTGGTCCTTAAATT
*
14471385 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAA
14471448 A
65 A
14471449 CTTTCACGAG
Statistics
Matches: 365, Mismatches: 37, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
339 35 0.10
340 329 0.90
341 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
AACTTAGTTACGTGAGAATTGTTTCTCTCCTGGTTCATAGACGAACATCCCAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTT
CAAACATTCCATGCTCGAAAAATCCCAAAATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14471144 original size:62 final size:62
Alignment explanation
Indices: 14471045--14471233 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
14471035 TCCTTGAATT
* *
14471045 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
14471107 AAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGAACTTCCCAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
14471169 AAAAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14471231 AAA
1 AAA
14471234 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14471205 original size:402 final size:401
Alignment explanation
Indices: 14470428--14471233 Score: 1100
Period size: 402 Copynumber: 2.0 Consensus size: 401
14470418 TCTTTAAATT
* * ** * **
14470428 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATTAACTTTTGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCGAACTTGTCAAAC
14470493 TTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAA
**
14470558 ATTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACAATCCATGCTCGAGAAATCACAAAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* * *
14470623 CCAATTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CCAATTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * * * *
14470688 TAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACAGG
261 GAACTTCCAAACTTGTCAAAAACTTAGTTACGTGAGAATAGTTTCTCTCCTGGTTCATGGACAGA
* *
14470753 CTTCCAAACTTGTCAAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACAT
14470818 CCGAACTTGTC
391 CCGAACTTGTC
* *
14470829 AAAAACTTATTTACGTAATAATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTATCTC-CTGGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * ** **
14470894 CTTTTATGATTTCTTTTATAACTTTTGTT-CTTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
65 CTTTCACGAGTTCTTTCATAACTTAGGTTCCTT-AAAGTATTCAAGACAATCCATTCCTTT-GAG
* * * * * ** * *
14470957 TAATTTTTCAAACATTCCATGCTCGGGAAATGGCAAAATTTGGTCTAAATAGTTTGTCTTTTTGT
128 CAAATTTCCAAACAATCCATGCTCGAGAAATCACAAAATTTGGTCAAAATAGTTTGTCATTTTGT
* *
14471022 AAA-CAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCT
193 AAACCAA-TTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCT
* * *
14471085 TGGACGAACTTTCAAACTTGTCAAAAACTTAGTTACGTGAGTATTGTTTCTCTCCTGGTTCATGG
256 TGGACGAACTTCCAAACTTGTCAAAAACTTAGTTACGTGAGAATAGTTTCTCTCCTGGTTCATGG
* * * *
14471150 AC-GAACTTCCCAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTGGAT
321 ACAG-ACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGAC
14471214 GAACATCCGAACTTGTC
385 GAACATCCGAACTTGTC
14471231 AAA
1 AAA
14471234 CTTTTACGAT
Statistics
Matches: 352, Mismatches: 47, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
401 38 0.11
402 312 0.89
403 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTAAGAATTGTATCTCCTGGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGTATTCAAGACAATCCATTCCTTTGAGCAA
ATTTCCAAACAATCCATGCTCGAGAAATCACAAAATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CCAATTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTAGTTACGTGAGAATAGTTTCTCTCCTGGTTCATGGACAGA
CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACGAACAT
CCGAACTTGTC
Found at i:14471551 original size:215 final size:217
Alignment explanation
Indices: 14471169--14471665 Score: 657
Period size: 215 Copynumber: 2.3 Consensus size: 217
14471159 CCAACTTGTC
* * * * *
14471169 AAAAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * **
14471234 CTTTTACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTGAGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
* * * ** *
14471299 ATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGT-ATAAATAGTTTGTCATTTTGTA
131 ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCA-AAATAGTTTGAAATATTGTA
*
14471363 AAC-AAGTTTTGGTCT-TTAAATT
195 AACAAAGTTTTGGACTGTT-AATT
*
14471385 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
** * *
14471449 CTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTT-TGTGC
66 CTTTCACGAGTTCTTTTATAACTGAGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCT-AG-
*
14471513 AAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGT
129 AAATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGT
14471577 AAACAAAGTTTTGGACTGTTAATT
194 AAACAAAGTTTTGGACTGTTAATT
* * * * *
14471601 AATAACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACGAA-TTTCCTAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTT-CGAACTTGTCAA
14471665 A
65 A
14471666 AACATATTTA
Statistics
Matches: 246, Mismatches: 28, Indels: 13
0.86 0.10 0.05
Matches are distributed among these distances:
214 1 0.00
215 140 0.57
216 75 0.30
217 30 0.12
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.39
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTGAGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGTAA
ACAAAGTTTTGGACTGTTAATT
Found at i:14471708 original size:62 final size:62
Alignment explanation
Indices: 14471604--14471852 Score: 347
Period size: 62 Copynumber: 4.0 Consensus size: 62
14471594 GTTAATTAAT
* * * **
14471604 AACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACGAATTTCCTAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAA
* * *
14471666 AACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAA
*
14471728 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACAT-CTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCT-AACTTGTCAAA
* * * * * *
14471790 AACTTATTTAAGTAAGATTTTTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAA
14471852 A
1 A
14471853 TTTTACGATT
Statistics
Matches: 168, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
61 1 0.01
62 166 0.99
63 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCTAACTTGTCAAA
Found at i:14472091 original size:958 final size:955
Alignment explanation
Indices: 14469892--14472191 Score: 3834
Period size: 958 Copynumber: 2.4 Consensus size: 955
14469882 TTTCGTATCA
* *
14469892 AATTGTTTCTCTGTTGGTTCTTGGACGAACATCAGAACTTGTCAAACTTTTACGATTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
* *
14469957 AACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTCGAACATTCCATG
66 AACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATG
* *
14470022 CTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAATAAGTTTTGGTCCTTGAA
131 CTCGGGAAATCGGATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAA
** * *
14470087 TTAAAAACTTATTTATATGAGAATTGGTTCTCTCTTGGTTCCTGGACGAACTTTCGAACTTCTCA
196 TTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
*
14470152 AAAAC-TTATTACGTGAGTATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCGAACTTGTCAAAA
261 AAAACTTTATTACGTGAGTATTGTTTCTCTCTTGGTTCT-GGACGAACTTCCAAACTTGTCAAAA
*
14470216 ACTTATTTACGTAGAAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
325 ACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
*
14470281 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATTCATTCCTTCTAGAAATTT
389 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
* *
14470346 TTCGAACATTCCATGCCCGAAAAATCCCATCATTTGTTCTAAATAGTTTGTCATTTTGTAAACAA
454 TTCGAACATTCCATGCCCGAAAAATCCCATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAA
**
14470411 CTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATTAAC
519 CTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAC
* *
14470476 TTTTGAACTTGTCAAACTTTCACGAGTTCTTTCATAACTTAGGTTCCTTAAAGTATTCAAGACAA
584 TTTCGAACTTGTCAAACTTTCACGAGTTCTTTCATAACTGAGGTTCCTTAAAGTATTCAAGACAA
14470541 TCCATTCCTTTGAGCAAATTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATA
649 TCCATTCCTTTGAGCAAATTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATA
** * * *
14470606 GTTTGTCATTTTGTAAACCAATTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTC
714 GTTTGAAATATTGTAAACAAATTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTATTTC
* * *
14470671 TCTCTTGGTTCTTGGACTAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATAGTTTCTCT
779 TCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATAGTTTCTCT
* *
14470736 CTTGGTTCTTGGACAGGCTTCCAAACTTGTCAAAAACTTATTTTCGTGAGAATTGTTTCTCTCTT
844 CTTGGTTCTTGGACAGACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * *
14470801 GGTTCTTAGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAT
909 GGTTCTTAGACAAACATCCGAACTTGTCAAAAACTTATTTAAGTAAG
* *
14470848 AATTGTTTCTCTCTGGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTATGATTTCTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
* * *
14470913 AACTTTTGTTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGTAATTTTTCAAACATTCCATG
66 AACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATG
*
14470978 CTCGGGAAAT-GGCAAAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGA
131 CTCGGGAAATCGG-ATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGA
*
14471042 ATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
195 ATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
14471107 AAAAAC-TTAGTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGAACTTCCCAACTTGTCAA
260 AAAAACTTTA-TTACGTGAGTATTGTTTCTCTCTTGGTTC-TGGACGAACTTCCAAACTTGTCAA
* *
14471171 AAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
323 AAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACT
*
14471236 TTTACGATTTCTTTTATAACTTTGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
387 TTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
*
14471301 TTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTATAAATAGTTTGTCATTTTGTAAAC
452 TTTTCGAACATTCCATGCCCGAAAAATCCCATCATTTGGTATAAATAGTTTGTCATTTTGTAAAC
*
14471366 AAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGA
517 AACTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGA
* *
14471431 ACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGTATTCAAGAT
582 ACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTCATAACTGAGGTTCCTTAAAGTATTCAAGAC
* * *
14471496 GATCCATTCCTTTGTGCAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAA
647 AATCCATTCCTTTGAGCAAATTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAA
14471561 TAGTTTGAAATATTGTAAACAAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTAT
712 TAGTTTGAAATATTGTAAACAAA-TTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTAT
* * *
14471626 TTCTCTCTTAGTTCTTGGACGAATTTCCTAACTTGTCAAAAACATATTTACGTGAGAATTGTTTC
776 TTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATAGTTTC
14471691 TCTCTTGGTTCTTGGAC-GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTC
841 TCTCTTGGTTCTTGGACAG-ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTC
* *
14471755 TCTTGGTTCTTGGACAAACATCTGAACTTGTCAAAAACTTATTTAAGTAAG
905 TCTTGGTTCTTAGACAAACATCCGAACTTGTCAAAAACTTATTTAAGTAAG
* * * * *
14471806 ATTTTTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAAATTTTACGATTTGTTTTAT
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
* * *
14471871 AACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAATATTCCGTG
66 AACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATG
*
14471936 TTCGGGAAATCGGATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAA
131 CTCGGGAAATCGGATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAA
* *
14472001 TTTAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
196 TTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * *
14472066 AAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
261 AAAACTTTATTACGTGAGTATTGTTTCTCTCTTGGTTC-TGGACGAACTTCCAAACTTGTCAAAA
* *
14472131 ACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
325 ACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14472192 AACTTATTTA
Statistics
Matches: 1252, Mismatches: 84, Indels: 14
0.93 0.06 0.01
Matches are distributed among these distances:
955 1 0.00
956 249 0.20
957 439 0.35
958 559 0.45
959 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (955 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTAT
AACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACATTCCATG
CTCGGGAAATCGGATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAA
TTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
AAAACTTTATTACGTGAGTATTGTTTCTCTCTTGGTTCTGGACGAACTTCCAAACTTGTCAAAAA
CTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
CGAACATTCCATGCCCGAAAAATCCCATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACT
TTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTT
TCGAACTTGTCAAACTTTCACGAGTTCTTTCATAACTGAGGTTCCTTAAAGTATTCAAGACAATC
CATTCCTTTGAGCAAATTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGT
TTGAAATATTGTAAACAAATTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTATTTCTC
TCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACATATTTACGTGAGAATAGTTTCTCTCT
TGGTTCTTGGACAGACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG
TTCTTAGACAAACATCCGAACTTGTCAAAAACTTATTTAAGTAAG
Found at i:14472101 original size:62 final size:62
Alignment explanation
Indices: 14472004--14472251 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
14471994 CCTTGAATTT
* *
14472004 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* * * *
14472066 AAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
14472128 AAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCTGAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCA
* * * * *
14472190 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
14472252 GACTTTTACG
Statistics
Matches: 166, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
61 1 0.01
62 164 0.99
63 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.40
Consensus pattern (62 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
Found at i:14472129 original size:402 final size:400
Alignment explanation
Indices: 14471385--14472592 Score: 1715
Period size: 401 Copynumber: 3.0 Consensus size: 400
14471375 TCTTTAAATT
* * * *
14471385 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* ** * *
14471449 CTTTCACGAGTTCTTTTATAACTGAGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTTGTGCA
66 CTTTTACGA-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTGAGCA
* * * * * * *** *
14471514 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGTAA
129 AATTTTCAAACATTCCATGTTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * * ** *
14471579 ACAAAGTTTTGG-ACTGTTAA-TTAATAACTTAGTTACGTGAGAATTATTTCTCTCTTAGTTCTT
194 AC-AAGTTTTGGTCCT-TGAATTTAA-AACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
* * *
14471642 GGACGAA-TTTCCTAACTTGTCAAAAACATATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
256 GGATGAACTTT-CAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14471706 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA
320 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
14471771 AACATCTGAACTTGTC
385 AACATCTGAACTTGTC
* * * *
14471787 AAAAACTTATTTAAGTAAGATTTTTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14471852 ATTTTACGATTTGTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGA-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAGCA
* * * *
14471917 ATTTTTCAAATATTCCGTGTTCGGGAAATCGGATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
129 AATTTTCAAACATTCCATGTTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
14471982 ACAAGTTTTGGTCCTTGAATTTAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
194 ACAAGTTTTGGTCCTTGAATTTAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * *
14472047 TGAACTTTCGAACTTGTCAAAAACTTTTTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
259 TGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
*
14472112 ACTTCCAAACTTGTCAAAAACTTATTTTCGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
324 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
14472177 TCTGAACTTGTC
389 TCTGAACTTGTC
* * *
14472189 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAGA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14472254 CTTTTACGATTCATTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTAGGGCAA
66 CTTTTACGATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTT-GAGCAA
* * * * *
14472319 CTTTTCGAACATTCCAT-TCTTGGAAAATCGCATAATTTGGACTAAATAGTTTGTCTTTTTGTAA
130 ATTTTCAAACATTCCATGT-TCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * *
14472383 ACAAGTTTTGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGTTTCTTGGA
194 ACAAGTTTTGGTCCTTGAATTTAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGA
* * *
14472448 TGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGAACGA
259 TGAACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * *
14472513 ACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTAGACGAACA
324 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
*
14472578 TCCGAACTTGTC
389 TCTGAACTTGTC
14472590 AAA
1 AAA
14472593 CTTTTACGAT
Statistics
Matches: 722, Mismatches: 78, Indels: 13
0.89 0.10 0.02
Matches are distributed among these distances:
400 1 0.00
401 301 0.42
402 275 0.38
403 145 0.20
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.40
Consensus pattern (400 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTGAGCAAA
TTTTCAAACATTCCATGTTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
AAGTTTTGGTCCTTGAATTTAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATG
AACTTTCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
TGAACTTGTC
Found at i:14472506 original size:62 final size:62
Alignment explanation
Indices: 14472404--14472592 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14472394 TCCTTGAATT
* * * * * *
14472404 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGTTTCTTGGATGAACTTTCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14472466 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
14472528 AAAAACTTATTTACGTAAGAATTGTTTGTCTCTTGGTTCTTAGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14472590 AAA
1 AAA
14472593 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14473146 original size:62 final size:61
Alignment explanation
Indices: 14472967--14473170 Score: 318
Period size: 62 Copynumber: 3.3 Consensus size: 61
14472957 AATTAATAAT
* * *
14472967 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGGCGAACTTTCAAACTTGTCAAA
1 AACTTATTTACGTGAGAA-TGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14473029 AACTTATTTACGTGAGAATATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14473090 AACTTATTTACGTGAGAATCGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAAT-GTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14473152 AACTTATTTAGGTAAGAAT
1 AACTTATTTACGTGAGAAT
14473171 TGTGATACGA
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
61 59 0.45
62 73 0.55
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.37
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14474066 original size:10 final size:9
Alignment explanation
Indices: 14474051--14474111 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 9
14474041 TCGTATTTCG
*
14474051 AAAAAAGTT
1 AAAAAAATT
14474060 AAAAAAATT
1 AAAAAAATT
**
14474069 AAAAAAAAG
1 AAAAAAATT
*
14474078 AAAAAAAAT
1 AAAAAAATT
* *
14474087 CAAAATATT
1 AAAAAAATT
* *
14474096 GAAAAAACT
1 AAAAAAATT
14474105 AAAAAAA
1 AAAAAAA
14474112 ATCGAAGTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (9 bp):
AAAAAAATT
Found at i:14474127 original size:27 final size:27
Alignment explanation
Indices: 14474061--14474195 Score: 89
Period size: 27 Copynumber: 5.1 Consensus size: 27
14474051 AAAAAAGTTA
* *
14474061 AAAAAATTAAAAAAAAGAAAAAAAATC
1 AAAATATTAAAAAAAATAAAAAAAATC
* *
14474088 AAAATATTGAAAAAACTAAAAAAAATC
1 AAAATATTAAAAAAAATAAAAAAAATC
* * * *
14474115 GAAGT-TTAAAAAAAAT-AAAAATATT
1 AAAATATTAAAAAAAATAAAAAAAATC
* ** * **
14474140 GAAATATTGGAAAAAAGAAAAAATTTC
1 AAAATATTAAAAAAAATAAAAAAAATC
* * *
14474167 AAAGT-TTGAAAAAAA-GAAAAAAATC
1 AAAATATTAAAAAAAATAAAAAAAATC
14474192 AAAA
1 AAAA
14474196 GAAGAAAAAA
Statistics
Matches: 83, Mismatches: 23, Indels: 6
0.74 0.21 0.05
Matches are distributed among these distances:
25 21 0.25
26 26 0.31
27 36 0.43
ACGTcount: A:0.70, C:0.04, G:0.08, T:0.19
Consensus pattern (27 bp):
AAAATATTAAAAAAAATAAAAAAAATC
Found at i:14474148 original size:52 final size:52
Alignment explanation
Indices: 14474067--14474187 Score: 136
Period size: 52 Copynumber: 2.3 Consensus size: 52
14474057 GTTAAAAAAA
* ** * *
14474067 TTAAAAAAAAGAAAAAAAATCAAAATATT-GAAAAAACTAAAAAAAATCGAAGT
1 TTAAAAAAAAG-AAAAATATTGAAATATTGGAAAAAA-GAAAAAAAATCAAAGT
* **
14474120 TTAAAAAAAATAAAAATATTGAAATATTGGAAAAAAGAAAAAATTTCAAAGT
1 TTAAAAAAAAGAAAAATATTGAAATATTGGAAAAAAGAAAAAAAATCAAAGT
*
14474172 TTGAAAAAAAGAAAAA
1 TTAAAAAAAAGAAAAA
14474188 AATCAAAAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
52 40 0.70
53 17 0.30
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.20
Consensus pattern (52 bp):
TTAAAAAAAAGAAAAATATTGAAATATTGGAAAAAAGAAAAAAAATCAAAGT
Found at i:14474196 original size:26 final size:26
Alignment explanation
Indices: 14474070--14474194 Score: 105
Period size: 26 Copynumber: 4.8 Consensus size: 26
14474060 AAAAAAATTA
*
14474070 AAAAAAAGAAAAAAAATCAAAATATTG
1 AAAAAAAG-AAAAAAATCAAAGTATTG
* *
14474097 AAAAAACTA-AAAAAAATCGAAGT-TTA
1 AAAAAA--AGAAAAAAATCAAAGTATTG
* * *
14474123 AAAAAAATAAAAATATTGAAA-TATTG
1 AAAAAAAGAAAAA-AATCAAAGTATTG
* *
14474149 GAAAAAAGAAAAAATTTCAAAGT-TTG
1 AAAAAAAGAAAAAA-ATCAAAGTATTG
14474175 AAAAAAAGAAAAAAATCAAA
1 AAAAAAAGAAAAAAATCAAA
14474195 AGAAGAAAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
24 1 0.01
25 12 0.15
26 46 0.58
27 19 0.24
29 1 0.01
ACGTcount: A:0.69, C:0.04, G:0.09, T:0.18
Consensus pattern (26 bp):
AAAAAAAGAAAAAAATCAAAGTATTG
Found at i:14475069 original size:16 final size:16
Alignment explanation
Indices: 14475044--14475083 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
14475034 AAGTATGAAG
14475044 AAAA-AGAAATTGAGA
1 AAAAGAGAAATTGAGA
14475059 AAAAGAGAAATTGAGA
1 AAAAGAGAAATTGAGA
14475075 AAAGAGAGA
1 AAA-AGAGA
14475084 GAGAAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 4 0.17
16 14 0.61
17 5 0.22
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (16 bp):
AAAAGAGAAATTGAGA
Found at i:14475077 original size:15 final size:15
Alignment explanation
Indices: 14475042--14475081 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
14475032 GAAAGTATGA
14475042 AGAAAA-AGAAATTG
1 AGAAAAGAGAAATTG
14475056 AGAAAAAGAGAAATTG
1 AG-AAAAGAGAAATTG
14475072 AGAAAAGAGA
1 AGAAAAGAGA
14475082 GAGAGAAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (15 bp):
AGAAAAGAGAAATTG
Found at i:14476458 original size:32 final size:32
Alignment explanation
Indices: 14476422--14476484 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
14476412 GCCATCCATA
* * *
14476422 CATGTACCTAAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAACTAATTG
* *
14476454 CATGTACTTGAAACACATTAATCAACTAATT
1 CATGTACCTAAAACACATTAATCAACTAATT
14476485 AAATTCGGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.33
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAACTAATTG
Found at i:14479652 original size:13 final size:14
Alignment explanation
Indices: 14479618--14479656 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
14479608 TATCTCTTTT
*
14479618 TCTTCCTTTTCATC
1 TCTTTCTTTTCATC
*
14479632 TTTTTCTTTTC-TC
1 TCTTTCTTTTCATC
14479645 TCTTTCTTTTCA
1 TCTTTCTTTTCA
14479657 CTTTCTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Found at i:14479671 original size:31 final size:28
Alignment explanation
Indices: 14479636--14479692 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
14479626 TTCATCTTTT
*
14479636 TCTTTTCTCTCTTTCTTTTCACTTTCTTTGC
1 TCTTTTCTCTC-AT-TTTTC-CTTTCTTTGC
14479667 TCTTTTCTCTCATTTTTCCTTTCTTT
1 TCTTTTCTCTCATTTTTCCTTTCTTT
14479693 TTTTCAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 5 0.20
30 1 0.04
31 11 0.44
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.67
Consensus pattern (28 bp):
TCTTTTCTCTCATTTTTCCTTTCTTTGC
Found at i:14479693 original size:21 final size:20
Alignment explanation
Indices: 14479667--14479715 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
14479657 CTTTCTTTGC
*
14479667 TCTTTTCTCTCATTTTTCCTT
1 TCTTTT-TCTCAATTTTCCTT
* *
14479688 TCTTTTTTTCAATTTTCTTT
1 TCTTTTTCTCAATTTTCCTT
14479708 TCTTTTTC
1 TCTTTTTC
14479716 ATTCTCACTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.71
Consensus pattern (20 bp):
TCTTTTTCTCAATTTTCCTT
Found at i:14483349 original size:24 final size:24
Alignment explanation
Indices: 14483317--14483371 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
14483307 GAGAGTTCTT
*
14483317 AAGAGGAAAATGAAAATGAAAAAC
1 AAGAAGAAAATGAAAATGAAAAAC
14483341 AAGAAGAAAATGAAAATGAAAAAC
1 AAGAAGAAAATGAAAATGAAAAAC
14483365 AAGAAGA
1 AAGAAGA
14483372 TACCTATACA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.69, C:0.04, G:0.20, T:0.07
Consensus pattern (24 bp):
AAGAAGAAAATGAAAATGAAAAAC
Found at i:14488176 original size:32 final size:32
Alignment explanation
Indices: 14488140--14488202 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
14488130 GCCATCCATA
* *
14488140 CATGTACCTAAAATATATTAATCAGCTAATTG
1 CATGTACCTAAAACACATTAATCAGCTAATTG
*
14488172 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTAAAACACATTAATCAGCTAATT
14488203 AAATTCAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (32 bp):
CATGTACCTAAAACACATTAATCAGCTAATTG
Found at i:14488292 original size:39 final size:39
Alignment explanation
Indices: 14488249--14488346 Score: 169
Period size: 39 Copynumber: 2.5 Consensus size: 39
14488239 TAATTTGTCT
* *
14488249 CAAACTTAGACATATTAAAAACAACTATTAAATATGTAC
1 CAAACTAAGACACATTAAAAACAACTATTAAATATGTAC
*
14488288 CAAACTAAGACACATTAAAAACAACTATTAAATATGTAT
1 CAAACTAAGACACATTAAAAACAACTATTAAATATGTAC
14488327 CAAACTAAGACACATTAAAA
1 CAAACTAAGACACATTAAAA
14488347 CCCTATTTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.54, C:0.16, G:0.05, T:0.24
Consensus pattern (39 bp):
CAAACTAAGACACATTAAAAACAACTATTAAATATGTAC
Found at i:14490076 original size:50 final size:51
Alignment explanation
Indices: 14490009--14490201 Score: 259
Period size: 51 Copynumber: 3.8 Consensus size: 51
14489999 TCTCATGATC
14490009 AGTT-AAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATGTT
1 AGTTAAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATGTT
* ** * **
14490059 AGTTAAA-TATGCATCATAAATCCT-ATCATGCATTATGTAACTCCCATGTT
1 AGTTAAAGTTTGCATCATAAATAATGA-CATGCATTAAGTAACTTACATGTT
14490109 AGTTAAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATGTT
1 AGTTAAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATGTT
* *
14490160 AGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAGTAA
1 AGTTAAAGTTTGCATCA-TAAAT-AATGACATGCATTAAGTAA
14490202 TCCATTGGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
49 1 0.01
50 46 0.37
51 54 0.44
52 20 0.16
53 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36
Consensus pattern (51 bp):
AGTTAAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATGTT
Found at i:14491928 original size:215 final size:216
Alignment explanation
Indices: 14491536--14491976 Score: 583
Period size: 215 Copynumber: 2.0 Consensus size: 216
14491526 GGTTTGAATC
* * *
14491536 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAATAAGTATTCAAGATAATCCATT
1 ACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAATAAGTATTCAAGATAATCCATT
* * * *
14491601 CATTCTAGAAATTTTTCGAACATTCCAAGCTCGGAATATCCCATCATTTGGTCTAAATAGTTTGT
66 CATTCTAGAAATTTTCCAAACATTCCAAGCTCGGAATATCACATCATTTGGTCAAAATAGTTTGT
* * *
14491666 CATTTTGTAAACAAGTTATGGTCTTTAAATTTAAAACTTATTTACGTGAGAATTGTATC-CCCTT
131 CATTTTCTAAACAAGTTATGGACTTTAAATTTAAAACTTAGTTACGTGAGAATTGTATCTCCCTT
*
14491730 CGTTCTTGGACAAACTTTCGA
196 CGTTCTTGGACAAACTTCCGA
*
14491751 ACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCC-TTAAAGTATTCAAGACT-ATCCA
1 ACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAAT-AAGTATTCAAGA-TAATCCA
* *
14491814 TTCCTT-TAAGCAAA-TTTCCAAACATTCCATGCTCGAGAA-ATCACATCATTTGGTCAAAATAG
64 TTCATTCT-AG-AAATTTTCCAAACATTCCAAGCTCG-GAATATCACATCATTTGGTCAAAATAG
* * *
14491876 TTTGTCATTTTCTAAACTAGTTTTGGACTGTT-AA-TTAATAACTTAGTTACGTGAGAATTGTTT
126 TTTGTCATTTTCTAAACAAGTTATGGACT-TTAAATTTAA-AACTTAGTTACGTGAGAATTGTAT
* * *
14491939 CTCTCTTGGTTCTTGGACGAACTTCCGA
189 CTCCCTTCGTTCTTGGACAAACTTCCGA
14491967 ACTTGTCAAA
1 ACTTGTCAAA
14491977 AACTTATTTA
Statistics
Matches: 198, Mismatches: 20, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
214 6 0.03
215 151 0.76
216 41 0.21
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (216 bp):
ACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCAATAAGTATTCAAGATAATCCATT
CATTCTAGAAATTTTCCAAACATTCCAAGCTCGGAATATCACATCATTTGGTCAAAATAGTTTGT
CATTTTCTAAACAAGTTATGGACTTTAAATTTAAAACTTAGTTACGTGAGAATTGTATCTCCCTT
CGTTCTTGGACAAACTTCCGA
Found at i:14492012 original size:62 final size:62
Alignment explanation
Indices: 14491915--14492156 Score: 385
Period size: 62 Copynumber: 3.9 Consensus size: 62
14491905 GTTAATTAAT
* *
14491915 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14491977 AACTTATTTACGTGTGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14492039 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGTACGAACATCCGAACTTATCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14492101 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCTGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
14492157 AACTTTTACG
Statistics
Matches: 165, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 165 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14492414 original size:62 final size:62
Alignment explanation
Indices: 14492310--14492498 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14492300 TCCTTGAATG
* * * *
14492310 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * * *
14492372 AAAAACATATTTATGTCAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
* * * *
14492434 AAAAACTTATTTATGTAAGAATTGTTTCTCTATTAGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
14492496 AAA
1 AAA
14492499 CATATACGAT
Statistics
Matches: 110, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 110 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTATGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
Found at i:14492966 original size:62 final size:62
Alignment explanation
Indices: 14492869--14493488 Score: 954
Period size: 62 Copynumber: 10.0 Consensus size: 62
14492859 GTTAATTAAT
* * *
14492869 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACCTCC-GACTTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC-TTGTCAAA
* ** * *
14492931 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTTTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14492993 AACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
** * *
14493055 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTTTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14493117 AACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14493179 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14493241 AACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14493303 AACTTATTTACATGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14493365 AACTTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
14493427 AACTTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14493489 CATTTACGAT
Statistics
Matches: 516, Mismatches: 41, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
62 514 1.00
63 2 0.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14493737 original size:62 final size:62
Alignment explanation
Indices: 14493640--14493892 Score: 382
Period size: 62 Copynumber: 4.1 Consensus size: 62
14493630 TCCTTGAATT
*
14493640 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14493702 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * *
14493764 AAAAACTTATTTACATAAGAATTGTTTCTTTATTGGTTATTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14493826 AAAAACTTATTTACGTTAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATT-CGAACTTGTC
1 AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTC
14493888 AAAAA
1 AAAAA
14493893 TTTACGATTT
Statistics
Matches: 172, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
62 171 0.99
63 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14493984 original size:402 final size:401
Alignment explanation
Indices: 14493238--14494294 Score: 1846
Period size: 402 Copynumber: 2.6 Consensus size: 401
14493228 CGAACTTGTC
* * *
14493238 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14493303 AACTTATTTACATGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
*
14493368 TTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
131 TTATTTACGTAAGAATTGTTTCT-TTTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
*
14493433 TTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTACGA
195 TTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAATTTACGA
14493498 TTTCTTTTATAAGTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTATCGAGCAATTTTTCGA
260 TTTCTTTTATAAGTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTATCGAGCAATTTTTCGA
*
14493563 ACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
325 ACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
14493628 GGTCCTTGAATT
390 GGTCCTTGAATT
14493640 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14493705 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* *
14493770 TTATTTACATAAGAATTGTTTCTTTATTGGTTATTGGACGAACATCCAAACTTGTCAAAAACTTA
131 TTATTTACGTAAGAATTGTTTCTTT-TTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
* *
14493835 TTTACGTTAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAATTTACGA
195 TTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAATTTACGA
*
14493900 TTTCTTTTATAAGTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGA
260 TTTCTTTTATAAGTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTATCGAGCAATTTTTCGA
*
14493965 ACATTCCATGCTGGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
325 ACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
14494030 GGTCCTTGAATT
390 GGTCCTTGAATT
14494042 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14494107 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
** * *
14494172 TTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
131 TTATTTACGTAAGAATTGTTTCT-TTTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
* * *
14494237 TTTAC-AAGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
195 TTTACGTA-AGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
14494295 CTTATTTACA
Statistics
Matches: 623, Mismatches: 29, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
401 2 0.00
402 620 1.00
403 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (401 bp):
AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTTTTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
TTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAATTTACGAT
TTCTTTTATAAGTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTATCGAGCAATTTTTCGAA
CATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTG
GTCCTTGAATT
Found at i:14494143 original size:62 final size:62
Alignment explanation
Indices: 14494042--14494354 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 62
14494032 TCCTTGAATT
* *
14494042 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14494104 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
14494166 AAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
** * *
14494228 AAAAACTTATTTACAAGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * **
14494290 AAAAACTTATTTACATAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14494352 AAA
1 AAA
14494355 CATTTACGAT
Statistics
Matches: 233, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 233 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14494602 original size:62 final size:63
Alignment explanation
Indices: 14494505--14494940 Score: 674
Period size: 62 Copynumber: 7.0 Consensus size: 63
14494495 TCCTTGAATT
* * *
14494505 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTAT-CGGACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
* *
14494567 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACT-TCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
14494629 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTAT-CGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
* *
14494691 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
* * * *
14494753 AAAAACTTATTTATGTGAGAATTGTTTCGCTCTTGGTTATTGGACAAAC-ATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
14494815 -AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAA-TATGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACT-TGTC
* * *
14494876 AAAAACTTATTTGCGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAAC-ATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
14494938 AAA
1 AAA
14494941 CTTTTACGAT
Statistics
Matches: 345, Mismatches: 22, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
60 1 0.00
61 58 0.17
62 284 0.82
63 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (63 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCCGAACTTGTC
Found at i:14495214 original size:62 final size:62
Alignment explanation
Indices: 14495097--14495214 Score: 182
Period size: 62 Copynumber: 1.9 Consensus size: 62
14495087 TTGAATTAAA
* * * * **
14495097 AAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTGGTTAG
1 AAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACTGGTTAG
14495159 AAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACT
1 AAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACT
14495215 TGTCAAACTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.40
Consensus pattern (62 bp):
AAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACTGGTTAG
Found at i:14495329 original size:281 final size:277
Alignment explanation
Indices: 14494815--14495455 Score: 899
Period size: 281 Copynumber: 2.3 Consensus size: 277
14494805 CGAACTTGTC
*
14494815 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAATATGTCAAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAAT-TGTCAAAA
* *
14494880 ACTTATTTGCGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
65 ACTTATTTACGTAAGAATTATTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * * * * * *
14494945 TACGATTTCTTTTATAGCTTCGGTTCCTAAAAGTATTCACGATGATCCATTCTTTCGAGCAATTT
130 TACGATTTCTTTTATAACCTCGGTTCCAAAAACTATTCACGATAATCCATTCCTTCGAGAAATTT
* * *
14495010 TTCAAACATTCCATGCTCGATAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTTTGTAAAT
195 TTCAAACATTCCATGCTCGATAAATCGCATAATTTGGTCTAAATAGTTTGTC--ATTTTATAAAC
* *
14495075 AAGTTTTGGTCCTTGAATTAA
258 AAGTTTTGGTACTTAAATT-A
* ** * * *
14495096 AAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTGGTTAGAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-TTGTCAAAA
*
14495161 ACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
65 ACTTATTTACGTAAGAATTATTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * *
14495226 TATGATTTCTTTTATAACCTCGGTTCCAAAAACTATTCTA-GATAATCCATTCCTTCTATAAATT
130 TACGATTTCTTTTATAACCTCGGTTCCAAAAACTATTC-ACGATAATCCATTCCTTCGAGAAATT
* ** *
14495290 TTTCAAACATTCCATGCTCGGA-AAATCTCATCGTTTGGTCTAAATTGTTTGTCATTTTATAAAC
194 TTTCAAACATTCCATGCTC-GATAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTATAAAC
*
14495354 AAGTTTTGGTATTTAAATTA
258 AAGTTTTGGTACTTAAATTA
* *
14495374 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCGAATTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAA-TTGTCAAAA
*
14495439 ACTTATTTACGTGAGAA
65 ACTTATTTACGTAAGAA
14495456 GAAACTCTTG
Statistics
Matches: 317, Mismatches: 40, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
278 73 0.23
279 24 0.08
281 216 0.68
282 4 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (277 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAATTGTCAAAAA
CTTATTTACGTAAGAATTATTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACCTCGGTTCCAAAAACTATTCACGATAATCCATTCCTTCGAGAAATTTT
TCAAACATTCCATGCTCGATAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTATAAACAAG
TTTTGGTACTTAAATTA
Found at i:14495446 original size:62 final size:62
Alignment explanation
Indices: 14495373--14495618 Score: 329
Period size: 62 Copynumber: 4.0 Consensus size: 62
14495363 TATTTAAATT
* * * *
14495373 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTCGGACGAACTTCCGAATTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*** *
14495435 AAAAACTTATTTACGTGAGAA--G--AAACTCTTGCTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
14495493 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
** * * * *
14495555 AGCAACTTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14495617 AA
1 AA
14495619 TCATTTACGA
Statistics
Matches: 160, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
58 50 0.31
60 2 0.01
62 108 0.68
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14495924 original size:62 final size:62
Alignment explanation
Indices: 14495771--14495958 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
14495761 TCCTTGAATG
* * *
14495771 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCGAACTT-TT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
14495832 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
14495894 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
14495956 AAA
1 AAA
14495959 CATTTATGAT
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
61 54 0.48
62 58 0.52
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:14496116 original size:339 final size:340
Alignment explanation
Indices: 14495435--14496173 Score: 1003
Period size: 339 Copynumber: 2.2 Consensus size: 340
14495425 CGAATTTGTC
** * * *
14495435 AAAAACTTATTTACGTGAGAA--G-A-AACTCTTGCTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * **
14495496 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAGCAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGAAGAACTTCCAAACTTGTCAAAAAC
* * * *
14495561 TTATTTACGTGAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCTAAACTTGTCAATCATTTA
131 TTATTTACGTAAGAATTCTTTCTCTATTGGTTCTTGGATGAACATCCAAACTTGTCAAACATTTA
** * * * * *
14495626 CGATTTCTTTTATAACTTCGGGTCCTTAAAGTATTCAAGATGATCAATTCTTTCTAGCAATTTCA
196 CGATTTCTTTTATAACTTCGGGTCCAAAAACTATTCAAGATAATCAATTCCTTCCAGAAATTTCA
* * *
14495691 CGAGCATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGT
261 CGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGT
*
14495756 TTTGGTCCTTGAATG
326 TTTGGTCCTTAAATG
* *
14495771 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTCCTTGGACGAACTTTCGAACTT-TTAA
1 AAAAACTTATTTACGTGAGAATT-GTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
* * * *
14495834 AAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTTCGAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGAAGAACTTCCAAACTTGTCAAAAA
* *
14495899 CTTATTTACGTAAGAATTGTTTCTCTATTGGTTCTTGGATGAACATCCGAACTTGTCAAACATTT
130 CTTATTTACGTAAGAATTCTTTCTCTATTGGTTCTTGGATGAACATCCAAACTTGTCAAACATTT
* *
14495964 ATGATTTCTTTTATAACTT-GGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCCAGAAATTT
195 ACGATTTCTTTTATAACTTCGGG-TCCAAAAACTATTCAAGATAATCAATTCCTTCCAGAAATTT
** *
14496028 TTCGAACATTCCATGCTCG-GAAAATC-CAATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
259 CACGAACATTCCATGCTCGAG-AAATCGC-ATAATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
* *
14496091 AAGTTTTGGTCTTTAAATT
322 AAGTTTTGGTCCTTAAATG
* *
14496110 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGAAGAACTTTCGAACTCGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14496174 CTTTCACCAG
Statistics
Matches: 350, Mismatches: 43, Indels: 17
0.85 0.10 0.04
Matches are distributed among these distances:
336 21 0.06
338 32 0.09
339 271 0.77
340 26 0.07
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (340 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCCTAGTTCTTGGAAGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTCTTTCTCTATTGGTTCTTGGATGAACATCCAAACTTGTCAAACATTTA
CGATTTCTTTTATAACTTCGGGTCCAAAAACTATTCAAGATAATCAATTCCTTCCAGAAATTTCA
CGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATG
Found at i:14496277 original size:215 final size:216
Alignment explanation
Indices: 14495894--14496389 Score: 601
Period size: 215 Copynumber: 2.3 Consensus size: 216
14495884 CGAACTTGTC
* * * *
14495894 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
** * * * *
14495959 CATTTATGATTTCTTTTATAACTTGGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCCAGAA
66 CATTTACCAGTTCCTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAGAA
* * * ** *
14496024 ATTTTTCGAACATTCCATGCTCGGAAAATCCAATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCAGAAAATCCAATCATTTGGTCAAAATAGTTTGAAATATTGTAA
*
14496089 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * *
14496110 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGAAGAACTTTCGAACTCGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
** * * * ***
14496174 C-TTTCACCAGTTCCTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTGCTTTGTGC
66 CATTT-ACCAGTTCCTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAG-
14496238 AAA-TTTCCAAACATTCCATGCTCCAGAAAA--CACATCATTTGGTCAAAATAGTTTGAAATATT
129 AAATTTTCCAAACATTCCATGCT-CAGAAAATCCA-ATCATTTGGTCAAAATAGTTTGAAATATT
*
14496300 GTAAGCAAGTTTTGGACTGTTAATT
192 GTAAACAAGTTTTGGACTGTTAATT
* * *
14496325 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
14496389 A
65 A
14496390 AACTTATTGA
Statistics
Matches: 238, Mismatches: 35, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
214 5 0.02
215 164 0.69
216 68 0.29
217 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CATTTACCAGTTCCTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAGAA
ATTTTCCAAACATTCCATGCTCAGAAAATCCAATCATTTGGTCAAAATAGTTTGAAATATTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14496425 original size:62 final size:62
Alignment explanation
Indices: 14496328--14496823 Score: 650
Period size: 62 Copynumber: 8.0 Consensus size: 62
14496318 GTTAATTAAT
* * * * *
14496328 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTCGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * ** *
14496390 AACTTATTGACGTGAGTATTGTTTCTCTCTTGGTTCGTGGAAGAACTTCTGAACTTTTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14496452 AACTTATCTACATCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
14496514 AACTTATTTACGTGACAATTGCTTCTCTCTTGGTTGTTGGATGAACTTCCAAACCTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14496576 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTCTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * **
14496638 AACTTATTTAAATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACACCCAAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
14496700 AACTTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * **
14496762 AACTTATTTACATAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCTGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14496824 CATTTACGAT
Statistics
Matches: 384, Mismatches: 50, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 384 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14497140 original size:62 final size:61
Alignment explanation
Indices: 14496978--14497164 Score: 250
Period size: 61 Copynumber: 3.0 Consensus size: 61
14496968 CCTTGAATTA
**
14496978 AAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATG-ACATTTCGAACTTGTC
1 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC-TTTCGAACTTGTC
** *
14497039 AAAACTTATTTACGTGAGTGTTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTGGTC
1 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
* * * * * *
14497100 AGAAACTTATTTACGTAAGAATTATTTCTCTCTCGATTCTTGGACGAACATCCGAACTTGTC
1 A-AAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
14497162 AAA
1 AAA
14497165 CTTTTACGAT
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
61 56 0.51
62 54 0.49
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (61 bp):
AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
Found at i:14497626 original size:62 final size:62
Alignment explanation
Indices: 14497315--14497611 Score: 441
Period size: 62 Copynumber: 4.8 Consensus size: 62
14497305 TATTTAAATT
* * * *
14497315 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
* * * * *
14497377 AAAAACTTACTTACGTGAGAATTGCTTCACTCTTGGCTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
* *
14497439 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
* *
14497501 AACAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
* * * *
14497563 AACAACTTATTTACGTGAGAATTATTTCTCTCTTGGCTCTTGGATGAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC
14497612 ATATGAACTT
Statistics
Matches: 215, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 215 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTC
Found at i:14497845 original size:464 final size:462
Alignment explanation
Indices: 14496977--14497967 Score: 1369
Period size: 464 Copynumber: 2.1 Consensus size: 462
14496967 TCCTTGAATT
* * * *
14496977 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATG-ACATTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAAC-TTCCAAACTTGTCAA
** * * *
14497041 AACTTATTTACGTGAGTGTTATTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTGGTCAGAAAC
65 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTGGTCAGAAAC
* * *
14497106 TTATTTACGTAAGAATTATTTCTCTCTCGATTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTATTTCTCTCTCGACTCTTGGACGAACATACGAACTTGTCAAACATTTA
* * *
14497171 CGATTTCTTTTATAACCTCGATTCCAAAAACTATTCCAGATAATCCATTCCTTTTACAAATTTTT
195 CGATTTCTTTTATAACCTCGAGTCCAAAAACTATTCAAGATAATCAATTCCTTTTACAAATTTTT
* * *
14497236 GAACATTCCATTCTCGAAAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTATAAACAAGTT
260 GAACATTCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTATAAACAAGTT
* * *
14497301 TTGGTATTTAAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACTT
325 TTGGTACTTAAATGAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTCCTTGGACGAACTT
*
14497366 TCGAACTTGTCAAAAACTTACTTACGTGAGAATTGCTTCACTCTTGGCTCTTGGACGAACTTCCA
390 TCGAACTTGTCAAAAACTTACTTACGTGAGAATTGCTTCACTCCTGGCTCTTGGACGAACTTCCA
14497431 AACTTGTC
455 AACTTGTC
* *
14497439 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTTAAC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAA-
* * *
14497504 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCA-ACAA
65 AACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTGGTCAGA-AA
* * * * *
14497568 CTTATTTACGTGAGAATTATTTCTCTCTTGGCTCTTGGATGAACATATGAACTTGTCAAACATTT
129 CTTATTTACGTAAGAATTATTTCTCTCTCGACTCTTGGACGAACATACGAACTTGTCAAACATTT
* ** * * * *
14497633 ACGATTTCTTTTATAACTTCGAGTCCTGAAAGTTTTCAAGATGATCAATT-CTTTCTAGCAATTT
194 ACGATTTCTTTTATAACCTCGAGTCCAAAAACTATTCAAGATAATCAATTCCTTT-TA-CAAATT
* * * * *
14497697 TTTGAGCATTCCATGCTCGAGAAATCGCATAATTTTGTCTAAATAGTTTGTCTTTTTGTAAACAA
257 TTTGAACATTCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTATAAACAA
* * *
14497762 GTTTTGGTCCTTGAATGAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAA
322 GTTTTGGTACTTAAATGAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTCCTTGGACGAA
* * * * * * *
14497827 CTTTCGAACTTTTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGATGAACTT
387 CTTTCGAACTTGTCAAAAACTTACTTACGTGAGAATTGCTTCACTCCTGGCTCTTGGACGAACTT
* *
14497892 TCGAACTTGTC
452 CCAAACTTGTC
* * *
14497903 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTGGTTCTTGGACA-AACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCAAACTTGTCAA
14497967 A
65 A
14497968 CATTTACGAT
Statistics
Matches: 462, Mismatches: 61, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
462 60 0.13
463 157 0.34
464 244 0.53
465 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (462 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTGTCAAA
ACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTGGTCAGAAACT
TATTTACGTAAGAATTATTTCTCTCTCGACTCTTGGACGAACATACGAACTTGTCAAACATTTAC
GATTTCTTTTATAACCTCGAGTCCAAAAACTATTCAAGATAATCAATTCCTTTTACAAATTTTTG
AACATTCCATGCTCGAAAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTATAAACAAGTTT
TGGTACTTAAATGAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTCCTTGGACGAACTTT
CGAACTTGTCAAAAACTTACTTACGTGAGAATTGCTTCACTCCTGGCTCTTGGACGAACTTCCAA
ACTTGTC
Found at i:14497883 original size:62 final size:62
Alignment explanation
Indices: 14497779--14497967 Score: 270
Period size: 62 Copynumber: 3.0 Consensus size: 62
14497769 TCCTTGAATG
* * *
14497779 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCGAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
14497841 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * * *
14497903 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTGGTTCTTGGACAAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
14497965 AAA
1 AAA
14497968 CATTTACGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 112 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:14498406 original size:62 final size:62
Alignment explanation
Indices: 14498309--14498804 Score: 728
Period size: 62 Copynumber: 8.0 Consensus size: 62
14498299 GTTAATTAAT
*
14498309 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14498371 AACTTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
14498433 AACTTATCTACATCAGAATTGTCTCTCTCTTGGTTCTTGGACTAACTTCTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14498495 AACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14498557 AATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14498619 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
14498681 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TAT-CGAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCG-AACTTGTCAAA
* * * *
14498743 AACTTATTTACGTAAGAATTCTTTCTCT-TCTGGTTTTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14498805 CATTTATGAT
Statistics
Matches: 390, Mismatches: 39, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
61 3 0.01
62 385 0.99
63 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14498639 original size:186 final size:186
Alignment explanation
Indices: 14498309--14499268 Score: 860
Period size: 186 Copynumber: 5.0 Consensus size: 186
14498299 GTTAATTAAT
*
14498309 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * * * *
14498374 TTATTTACGTGAGTACTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTTTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * * * *
14498439 TCTACATCAGAATTGTCTCTCTCTTGGTTCTTGGACTAACTTCTGAACTTGTCAAA
131 TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14498495 AACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAAAT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
*
14498560 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
14498625 TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTCTCAAA
131 TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
*
14498681 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TAT-CGAAACTTGTCAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCG-AACTTGTCAAAA
* * * * * * *
14498744 ACTTATTTACGTAAGAATTCTTTCTCT-TCTGGTTTTTGGACGAACATCCGAACTTGTCAAACAT
64 ACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * * *** ** * * * *
14498808 TTATGATTTCTTTTATAACTTCGGTTC-CTGAAAGTGTTCAAGATGATCCATTCTTTCGAGTAAT
128 TTAT--TTAC-ATGAGAA-TT-GTTTCTCT-CTTG-GTTCTTG--GA-CGA-AC-TTC-CG-AAC
*
14498872 TTTTCAAA
179 TTGTCAAA
* * * * * * * * * *
14498880 CA-TTCCATGCT-CGGGA-AATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC-AAGT
1 AACTT--AT-TTACGTGAGAAT----T--GTT--TCT--CT--CTTG-GTTCTTG--GACGAA-C
** ** * * * *
14498941 TTTGGTCCTTGAATTAAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGATGAACT
47 TTCCGAACTTG--TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
14499006 TCCAAACTTGTCAAAAACTTATTTACGCT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
110 TCCAAACTTGTCAAAAACTTATTTAC-ATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
14499070 CGAACTTGTCAAA
174 CGAACTTGTCAAA
* * * *
14499083 AACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
14499148 TTATTTACAG-GAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTT
66 TTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
* * * *
14499212 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCAAACTTGTCAAA
130 ATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14499269 CTTTTACGAT
Statistics
Matches: 616, Mismatches: 110, Indels: 96
0.75 0.13 0.12
Matches are distributed among these distances:
185 5 0.01
186 395 0.64
187 1 0.00
188 11 0.02
189 6 0.01
190 8 0.01
191 8 0.01
192 5 0.01
193 1 0.00
194 2 0.00
195 5 0.01
196 1 0.00
197 5 0.01
198 2 0.00
199 14 0.02
200 5 0.01
201 2 0.00
202 6 0.01
203 14 0.02
204 3 0.00
205 5 0.01
206 1 0.00
207 5 0.01
208 2 0.00
209 1 0.00
210 5 0.01
211 8 0.01
212 9 0.01
213 5 0.01
214 11 0.02
215 2 0.00
216 62 0.10
217 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (186 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14499025 original size:650 final size:649
Alignment explanation
Indices: 14498091--14499268 Score: 1738
Period size: 650 Copynumber: 1.8 Consensus size: 649
14498081 TCTTTAAATT
* * * *
14498091 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGAAGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTCTATCTCCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
* *
14498156 TTTCATGAATTCCTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGTGCAA
66 TTTCATGAATTCCTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
* *
14498221 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTAAAAATAGTTTGAAATATTGTAAG
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTAAAAATAGTTTGAAATATTGTAAA
* * *
14498286 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
* * *
14498351 GAACTTCCGAACTTGTCAAAAACTTATTTACG-TGAGTACTGTTTCTCTCTTGGTTCTTGGATGA
261 GAACTTCCAAACTTGTCAAAAACTTATTTACGCT-AGAACTGTTTCTCTCTTGGTTCTTGGACGA
* * * * *
14498415 ACTTCCGAACTTTTCAAAAACTTATCTACATC-AGAATTGTCTCTCTCTTGGTTCTTGGACTAAC
325 ACTTCCGAACTTGTCAAAAACTTATCTAC-GCGAGAATTATCTCTCTCTTGGGTCTTGGACGAAC
** * * * *
14498479 TTCTGAACTTGTCAAAAACTTATTTAC-GTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
389 TTCCAAACTTGTCAAAAACTTATTTACAG-GACAATTATTTATCTCTTGGTTCTTGGACGAACAT
* * *
14498543 CCGAACTTGTCAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCA
453 CCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCA
14498608 AACCTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
518 AACCTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAAC
14498673 TTCTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCGAAACTTG
583 TTCTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCGAAACTTG
14498738 TC
648 TC
* * * *
14498740 AAAAACTTATTTACGTAAGAATTCTTTCTCTTCTGGTTTTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTCTATCTCCT-TGGTTCTTGGAAGAACATCCGAACTTGTCAAA
* * * * *
14498805 CATTT-ATGATTTCTTTTATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATT-CTTTCGAG
65 C-TTTCATGAATTCCTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTT-GAG
* * * * ** *** *
14498868 TAATTTTTCAAACATTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGT
128 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTAAAAATAGTTTGAAATATTGT
* * *
14498933 AAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTT
193 AAACAAGTTTTGG-ACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTT
* *
14498997 GGATGAACTTCCAAACTTGTCAAAAACTTATTTACGCTAGAATTGTTTCTCTCTTGGTTCTTGGA
257 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGCTAGAACTGTTTCTCTCTTGGTTCTTGGA
* *
14499062 CGAACTTCCGAACTTGTCAAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGA
322 CGAACTTCCGAACTTGTCAAAAACTTATCTACGCGAGAATTATCTCTCTCTTGGGTCTTGGACGA
*
14499127 ACTTCCAAACTTGTCAAAAACTTATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACA
387 ACTTCCAAACTTGTCAAAAACTTATTTACAGGACAATTATTTATCTCTTGGTTCTTGGACGAACA
*
14499192 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCC
452 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
*
14499257 AAACTTGTCAAA
517 AAACCTGTCAAA
14499269 CTTTTACGAT
Statistics
Matches: 465, Mismatches: 57, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
649 33 0.07
650 425 0.91
651 7 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (649 bp):
AAAAACTTATTTACGTAAGAATTCTATCTCCTTGGTTCTTGGAAGAACATCCGAACTTGTCAAAC
TTTCATGAATTCCTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGTAAAAATAGTTTGAAATATTGTAAA
CAAGTTTTGGACTGTGAATTAAAAACTTAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACGCTAGAACTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCGAACTTGTCAAAAACTTATCTACGCGAGAATTATCTCTCTCTTGGGTCTTGGACGAACTT
CCAAACTTGTCAAAAACTTATTTACAGGACAATTATTTATCTCTTGGTTCTTGGACGAACATCCA
AACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAAC
CTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTC
TCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCGAAACTTGTC
Found at i:14499053 original size:62 final size:61
Alignment explanation
Indices: 14498956--14499268 Score: 473
Period size: 62 Copynumber: 5.0 Consensus size: 61
14498946 TCCTTGAATT
* *
14498956 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTC
1 AAAAACTTATTTACG-TAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
*
14499018 AAAAACTTATTTACGCTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACG-TAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14499080 AAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACG-TAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
14499142 AAAAACTTATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTAC-GTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14499204 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14499266 AAA
1 AAA
14499269 CTTTTACGAT
Statistics
Matches: 234, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
61 1 0.00
62 232 0.99
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.37
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14499364 original size:464 final size:464
Alignment explanation
Indices: 14498492--14499573 Score: 1731
Period size: 464 Copynumber: 2.3 Consensus size: 464
14498482 TGAACTTGTC
* *
14498492 AAAAACTTATTTACGTGACAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * *
14498557 AATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACCTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* *
14498622 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTCTCAAAAACTTA
131 TTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTCTCAAAAACTTA
* * * * *
14498687 TTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATATCGAAACTTGTCAAAAACTTATTT
196 TTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTT
* *
14498752 ACGTAAGAATTCTTTCTCTTCTGGTTTTTGGACGAACATCCGAACTTGTCAAACATTTATGATTT
261 ACGTAAGAATTCTTTCTCTTCTGGTTTTTGGACGAACATCCAAACTTGTCAAACATTTACGATTT
* * *
14498817 CTTTTATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTCGAGTAATTTTTCAAACA
326 CTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACA
*
14498882 TTCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGT
391 TTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGT
14498947 CCTTGAATT
456 CCTTGAATT
* *
14498956 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
14499021 AACTTATTTACGCT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
66 AACTTATTTACG-TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* * *
14499085 CTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
130 CTTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTCTCAAAAACTT
14499150 ATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATT
195 ATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATT
* * *
14499215 TACGTGAGAATTGTTTCTC-TCTTGGTTCTTT-GACGAACATCCAAACTTGTCAAACTTTTACGA
260 TACGTAAGAATTCTTTCTCTTC-TGGTT-TTTGGACGAACATCCAAACTTGTCAAACATTTACGA
* *
14499278 TTTCTTTTATAACTTCGGTTTCTAAAAGTATTCAAGATGATCCATTTTTTCGAGCAATTTTTCAA
323 TTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAA
*
14499343 ACATTCCATGCTCTAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
388 ACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTT
14499408 GGTCCTTGAATT
453 GGTCCTTGAATT
* ** *
14499420 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGAATGAACTTTTGAACTTGTC-GA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * * * ** * *
14499484 AACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGTACGAACTTTCGGGCTGGTCAGAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
*
14499549 TTATTTACGTAAGAATTGTTTCTCT
131 TTATTTACGTGAGAATTGTTTCTCT
14499574 TTCGATTCTT
Statistics
Matches: 568, Mismatches: 46, Indels: 9
0.91 0.07 0.01
Matches are distributed among these distances:
462 1 0.00
463 80 0.14
464 483 0.85
465 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (464 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTCTCAAAAACTTA
TTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTT
ACGTAAGAATTCTTTCTCTTCTGGTTTTTGGACGAACATCCAAACTTGTCAAACATTTACGATTT
CTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCAAACA
TTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGT
CCTTGAATT
Found at i:14499520 original size:61 final size:62
Alignment explanation
Indices: 14499422--14499600 Score: 209
Period size: 61 Copynumber: 2.9 Consensus size: 62
14499412 CTTGAATTAA
* * * *
14499422 AAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGAATGAACTTTTGAACTTGTC-G
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGAATGAACTTTCGAACTGGTCAG
* * * **
14499483 AAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGTACGAACTTTCGGGCTGGTCAG
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGAATGAACTTTCGAACTGGTCAG
* * * * *
14499545 AAACTTATTTACGTAAGAATTGTTTCTCT-TTCGATTCTTGGATGAACATCCGAACT
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTAG-TTCTTGAATGAACTTTCGAACT
14499601 TGTTAACCTT
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
61 54 0.55
62 44 0.45
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.41
Consensus pattern (62 bp):
AAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGAATGAACTTTCGAACTGGTCAG
Found at i:14499721 original size:339 final size:339
Alignment explanation
Indices: 14499080--14499944 Score: 1168
Period size: 339 Copynumber: 2.6 Consensus size: 339
14499070 CGAACTTGTC
* * * **
14499080 AAAAACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * *
14499145 AACTTATTTACAG-GAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
65 AACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* *
14499209 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCAAACTTGTCAAACTTTT
129 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAACTTTT
* * * * **
14499274 ACGATTTCTTTTATAACTTCGGTTTCTAAAAGTATTCAAGATGATCCATTTTTTCGAGCAATTTT
194 ACGATTTCTTTTATAACCTCGGTTTCAAAAACTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* * * * *
14499339 TCAAACATTCCATGCTCTAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
259 TCAAACATTCCATGCTCGAAAAATCACATAATTTGGGCTAAATAGTTTGTCATTTTATAAACAAG
* *
14499404 TTTTGGTCCTTGAATT
324 TTTTGGTACTTAAATT
* * * *
14499420 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGAATGAACTTTTGAACTTGTC-GA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
* * * * *** * *
14499484 AACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGTACGAACTTTCGGGCTGGTCAGAAAC
65 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * * * *
14499549 TTATTTACGTAAGAATTGTTTCTCT-TTCGATTCTTGGATGAACATCCGAACTTGTTAACCTTTT
130 TTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGAAGAACATCCAAACTTGTCAAACTTTT
* *
14499613 ACGATTTCTTTTATAACCTCGG-TTCAAAAAACTATTCTAGATAATCCATTCCTTCTAG-ACATT
194 ACGATTTCTTTTATAACCTCGGTTTC-AAAAACTATTCAAGATAATCCATTCCTTCGAGCA-ATT
* *
14499676 TTTCGAACATTCCATGCTCGAAAAAT-ATCATCATTTGGGCTAAATAGTTTGTCATTTTATAAAC
257 TTTCAAACATTCCATGCTCGAAAAATCA-CATAATTTGGGCTAAATAGTTTGTCATTTTATAAAC
*
14499740 AAGTTTTGGTATTTAAATT
321 AAGTTTTGGTACTTAAATT
*
14499759 AAAAACTTATTTACGTGAGAATTGTT-TCTCTCGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
1 AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
14499823 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
66 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* *
14499888 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAA
131 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAA
14499945 CAACTTATTT
Statistics
Matches: 450, Mismatches: 68, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
337 30 0.07
338 116 0.26
339 251 0.56
340 53 0.12
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAACTTTTAC
GATTTCTTTTATAACCTCGGTTTCAAAAACTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
AAACATTCCATGCTCGAAAAATCACATAATTTGGGCTAAATAGTTTGTCATTTTATAAACAAGTT
TTGGTACTTAAATT
Found at i:14499881 original size:62 final size:62
Alignment explanation
Indices: 14499759--14500007 Score: 403
Period size: 62 Copynumber: 4.0 Consensus size: 62
14499749 TATTTAAATT
**
14499759 AAAAACTTATTTACGTGAGAATTGTTTCTCTC--GGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14499819 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14499881 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * **
14499943 AACAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14500005 AAA
1 AAA
14500008 CATTTACGCT
Statistics
Matches: 176, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
60 32 0.18
62 144 0.82
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14500322 original size:62 final size:62
Alignment explanation
Indices: 14500159--14500326 Score: 255
Period size: 62 Copynumber: 2.7 Consensus size: 62
14500149 TCCTTGAATG
* * * *
14500159 AAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCGAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
14500221 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * *
14500283 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTAGTTCTTGGA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
14500327 TGAAGATCCG
Statistics
Matches: 95, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:14500339 original size:62 final size:61
Alignment explanation
Indices: 14500159--14500346 Score: 250
Period size: 62 Copynumber: 3.0 Consensus size: 61
14500149 TCCTTGAATG
* * *
14500159 AAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCGAACTTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TTTC
* *
14500221 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTT-TC
* * * * ** *
14500283 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTAGTTCTTGGATGAAGATCCGAACTTTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTTC
14500344 AAA
1 AAA
14500347 CATTTACGAA
Statistics
Matches: 111, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
61 7 0.06
62 104 0.94
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTTC
Found at i:14500468 original size:739 final size:739
Alignment explanation
Indices: 14499018--14500561 Score: 2373
Period size: 739 Copynumber: 2.1 Consensus size: 739
14499008 CAAACTTGTC
*
14499018 AAAAACTTATTTACGCT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 AAAAACTTATTTACG-TGAGAATTGTTTCTCTC--GGTTCTTGGACGAACTTCTGAACTTGTCAA
14499082 AAACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAA
63 AAACTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAA
*
14499147 CTTATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTT
128 CTTATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAAAACTT
* *
14499212 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTTGACGAACATCCAAACTTGTCAAACTTTTACG
193 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTTACG
* * * *
14499277 ATTTCTTTTATAACTTCGGTTTCTAAAAGTATTCAAGATGATCCATTTTTTCGAGCAATTTTTCA
258 ATTTCTTTTATAACTTCGGGTCCTAAAAGTATTCAAGATGATCAATTCTTTCGAGCAATTTTTCA
* *
14499342 AACATTCCATGCTCTAGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTT
323 AACATTCCATGCTCGAGAAATCACATAATTTGGTCGAAATAGTTTGTCTTTTTGTAAACAAGTTT
* * * *
14499407 TGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGAATGAACTTT
388 TGGTCCTTGAATGAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGAACGAACTTT
* * * * **
14499472 TGAACTTGTCGAAACTTATTTACGTGAGTATTGTTTCTCTCTTAGTTCTTGTACGAACTTTCGGG
453 CGAACTTGTCAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTTCGAA
* *
14499537 CTGGTCAGAAACTTATTTACGTAAGAATTGTTTCTCTTTCGATTCTTGGATGAACATCCGAACTT
518 CTGGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTTAGATTCTTGGATGAACATCCGAACTT
* * * * *
14499602 GTTAACCTTTTACGATTTCTTTTATAACCTCGGTTCAAAAAACTATTCTAGATAATCCATTCCTT
583 GTCAAACATTTACGAATTCTTTTATAACCTCGGTTCAAAAAACTATTCAAGATAATCCATTCCTT
* * * *
14499667 CTAGACATTTTTCGAACATTCCATGCTCGAAAAATATCATCATTTGGGCTAAATAGTTTGTCATT
648 CCAGAAATTTTTCGAACATTCCATGCTCGAAAAATACCATCATTTGGGCAAAATAGTTTGTCATT
14499732 TTATAAACAAGTTTTGGTATTTAAATT
713 TTATAAACAAGTTTTGGTATTTAAATT
14499759 AAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGACGAACTTCTGAACTTGTCAAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGACGAACTTCTGAACTTGTCAAAAA
* * *
14499824 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
66 CTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
* * * * *
14499889 ATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCAAACTTTTCAACAACTTAT
131 ATTTACAG-GAGAATTATTTATCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAAAACTTAT
* ** *
14499953 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCTGAACTTGTCAAACATTTACGCT
195 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTTACGAT
* * *
14500018 TTCTTTTATAACTTTGGGTCCTAAAAGTATTCAAGATGATCAATTCTTTCTAGCAATTTTTCGAA
260 TTCTTTTATAACTTCGGGTCCTAAAAGTATTCAAGATGATCAATTCTTTCGAGCAATTTTTCAAA
* *
14500083 CATTCCATGCTCGAGAAATCGCATAATTTGGTCGAAATAGTTTGTCTTTTTGTATACAAGTTTTG
325 CATTCCATGCTCGAGAAATCACATAATTTGGTCGAAATAGTTTGTCTTTTTGTAAACAAGTTTTG
*
14500148 GTCCTTGAATGAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGGACGAACTTTCG
390 GTCCTTGAATGAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGAACGAACTTTCG
* *
14500213 AACTTTTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCTTGGACGAACTTTCGAAC
455 AACTTGTC-AAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTTCGAAC
* *
14500278 TTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTATTAG-TTCTTGGATGAAGATCCGAACTT
519 TGGTCAAAAACTTATTTACGTAAGAATTGTTTCTCT-TTAGATTCTTGGATGAACATCCGAACTT
* * * *
14500342 -TCAAACATTTACGAATTCTTTTATAACTTCTGTTCCAAAAACTATTCAAGTTAATCCATTCCTT
583 GTCAAACATTTACGAATTCTTTTATAACCTCGGTTCAAAAAACTATTCAAGATAATCCATTCCTT
* * *
14500406 CCAGAAATTTTTCGAATATTCCATGCTC-AGAAAATCCCATCATTTGGTCAAAATAGTTTGTCAT
648 CCAGAAATTTTTCGAACATTCCATGCTCGA-AAAATACCATCATTTGGGCAAAATAGTTTGTCAT
* *
14500470 TTTGTAAACAAGTTTTGGTCTTTAAATT
712 TTTATAAACAAGTTTTGGTATTTAAATT
* *
14500498 AAAAACTTATTTACGTGAGAATTGTATT-TCCTTGGTTCTTGGAAGAACTT-TCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGT-TTCT-CTCGGTTCTTGGACGAACTTCT-GAACTTGTCAA
14500561 A
63 A
14500562 CTTTCACGAG
Statistics
Matches: 731, Mismatches: 64, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
738 2 0.00
739 557 0.76
740 139 0.19
741 33 0.05
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (739 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCGGTTCTTGGACGAACTTCTGAACTTGTCAAAAA
CTTATTTACGCGAGAATTATTTCTCTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
ATTTACAGGAGAATTATTTATCTCTTGGTTCTTGGAAGAACATCCAAACTTGTCAAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACATTTACGATT
TCTTTTATAACTTCGGGTCCTAAAAGTATTCAAGATGATCAATTCTTTCGAGCAATTTTTCAAAC
ATTCCATGCTCGAGAAATCACATAATTTGGTCGAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG
TCCTTGAATGAAAAACTTAATTACGTGAGAATTGGTTCTCTCTTGGTCCTTGAACGAACTTTCGA
ACTTGTCAAAACTTATTTACGTGAGTATTGTTTCTCTCCTAGTTCTTGGACGAACTTTCGAACTG
GTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTTAGATTCTTGGATGAACATCCGAACTTGTC
AAACATTTACGAATTCTTTTATAACCTCGGTTCAAAAAACTATTCAAGATAATCCATTCCTTCCA
GAAATTTTTCGAACATTCCATGCTCGAAAAATACCATCATTTGGGCAAAATAGTTTGTCATTTTA
TAAACAAGTTTTGGTATTTAAATT
Found at i:14500664 original size:215 final size:216
Alignment explanation
Indices: 14500283--14500777 Score: 599
Period size: 215 Copynumber: 2.3 Consensus size: 216
14500273 CGAACTTGTC
* * * * **
14500283 AAAAACTTATTTACGTAAGAATTGTTTCTCTATTAGTTCTTGGATGAAGATCCGAACTT-TCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
** **
14500347 CATTTACGAATTCTTTTATAACTTCTGTTCCAAAAACTATTCAAGTTAATCCATTCCTTCCAGAA
66 CATTTACGAATTCTTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAGAA
* * * * ** *
14500412 ATTTTTCGAATATTCCATGCTCAGAAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGTAA
*
14500477 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
*
14500498 AAAAACTTATTTACGTGAGAATTGTATT-TC-CTTGGTTCTTGGAAGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAA
* ** * * * ***
14500561 AC-TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTGCTTTGTG
65 ACATTT-ACGAATTCTTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAG
* *
14500625 CAAA-TTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCAAAATAGTTTGAAATATTG
129 -AAATTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATATTG
*
14500689 TAAGCAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* *
14500713 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-AACTTCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-AGAACTTCCGAACTTGTCAA
14500777 A
65 A
14500778 AACTTATTTA
Statistics
Matches: 238, Mismatches: 34, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
214 27 0.11
215 172 0.72
216 38 0.16
217 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAAGAACTTCCGAACTTGTCAAA
CATTTACGAATTCTTTTATAACTTAGGTTCCAAAAACTATTCAAGACAATCCATTCCTTCCAGAA
ATTTTCCAAACATTCCATGCTCAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATATTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14500813 original size:62 final size:62
Alignment explanation
Indices: 14500716--14501087 Score: 537
Period size: 62 Copynumber: 6.0 Consensus size: 62
14500706 GTTAATTAAT
* *
14500716 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
14500778 AACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCGTGGAAGAACTTTCGATCTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
14500840 AGCTTATTTACATCAGAATTATTTTTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14500902 CACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14500964 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14501026 AACTTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14501088 CATTTACGAT
Statistics
Matches: 272, Mismatches: 38, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 272 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14501341 original size:62 final size:61
Alignment explanation
Indices: 14501239--14501427 Score: 218
Period size: 62 Copynumber: 3.0 Consensus size: 61
14501229 TCCTTGAATT
* * * *
14501239 AAAAACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTATCGGACTTGTC
1 AAAAA-TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCGAACTTGTC
* * * * * *
14501301 AAAAATATTTTTACGTGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTGGTC
1 AAAAAT-TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCGAACTTGTC
* * *
14501363 AGGAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAAC-ATCCGAACTTGTC
1 A-AAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTAT-CGAACTTGTC
14501425 AAA
1 AAA
14501428 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
61 3 0.03
62 99 0.94
63 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (61 bp):
AAAAATTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTATCGAACTTGTC
Found at i:14501534 original size:340 final size:340
Alignment explanation
Indices: 14500903--14501765 Score: 1153
Period size: 340 Copynumber: 2.5 Consensus size: 340
14500893 CTTGTCAAAC
* *
14500903 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAACTTCCGAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* *
14500968 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTAT
66 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
14501033 TTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTACGAT
131 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTACGAT
* * * * * * * * *
14501098 TTCTTTTATAATTTCGGTTCCTAAAAGTATTGAAGGTGATCAATTCTTTAGAGAAATTTTACGAA
196 TTCTTTTATAACTTCGGTTCCAAAAACTACTCAAGATAATCAATTCCTTAGAGAAATTTTACAAA
** * *
14501163 CATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTGTCTTTTTGTAAACAAGTTTTG
261 CATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTACCATTTTATAAACAAGTTTTG
* *
14501228 GTCCTTGAATTAAAA
326 GTACTTAAATTAAAA
* * *
14501243 ACTTATTTACGTTAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTAT-CGGACTTGTCAAAAA-
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAAAAC
* * * * * * **
14501306 TATTTTTACGTGAGAATCGTTTCTCTCTTGATTCTTGGACGAACTTTCGAACTGGTCAGGAACTT
65 T-TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTT
* *
14501371 ATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACG
129 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTACG
* * * ** *
14501436 ATTTCTTTTGTAACCTT-GGTTCCAAAAACTACTCTAGATAATCCATTCCTTCTAGAAATTTTTC
194 ATTTCTTTTATAA-CTTCGGTTCCAAAAACTACTCAAGATAATCAATTCCTTAGAGAAATTTTAC
** * * *
14501500 AAACATTCCATGTTCG-GAAAATCTCATCATTTGGTCTAAATAGTTTACCATTTTATAAACAAGT
258 AAACATTCCATGCACGAG-AAATCGCATAATTTGGTCTAAATAGATTACCATTTTATAAACAAGT
*
14501564 TTTGGTATTTAAATTAAAA
322 TTTGGTACTTAAATTAAAA
14501583 ACTTATTTACGTGAGAATT-GTT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
1 ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* * *
14501646 TATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAGCTTCCGAACTTTTCAAAAACTTAT
66 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* * * * * *
14501711 TTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGACCTTCCAAAATTGTCAAA
131 TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14501766 AACTTATTTA
Statistics
Matches: 450, Mismatches: 67, Indels: 14
0.85 0.13 0.03
Matches are distributed among these distances:
337 1 0.00
338 137 0.30
339 6 0.01
340 303 0.67
341 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (340 bp):
ACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
TTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACATTTACGAT
TTCTTTTATAACTTCGGTTCCAAAAACTACTCAAGATAATCAATTCCTTAGAGAAATTTTACAAA
CATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTACCATTTTATAAACAAGTTTTG
GTACTTAAATTAAAA
Found at i:14501692 original size:62 final size:62
Alignment explanation
Indices: 14501579--14501951 Score: 545
Period size: 62 Copynumber: 6.0 Consensus size: 62
14501569 TATTTAAATT
*
14501579 AAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14501639 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGAGCTTCCGAACTTTTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
14501701 AAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGACCTTCCAAAATTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
14501763 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AGACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA-ACTTGTC
* * * * *
14501825 AAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCAAAGTTCTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * *
14501887 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14501949 AAA
1 AAA
14501952 CTTTTACGAT
Statistics
Matches: 284, Mismatches: 25, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
60 22 0.08
61 3 0.01
62 258 0.91
63 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14501827 original size:864 final size:864
Alignment explanation
Indices: 14500498--14502711 Score: 2923
Period size: 864 Copynumber: 2.5 Consensus size: 864
14500488 TCTTTAAATT
* * * *
14500498 AAAAACTTATTTACGTGAGAATTGTATT-TC-CTTGGTTCTTGGAAGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTAAGAATTGT-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * *
14500561 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTGCTT-TGTG
65 ACTTTTACGATTTCTTTTATAACTT-GGTTCCTAAAAGTATTCAAGATGATCCATTGCTTCT-AG
* * *
14500625 CAAA-TTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGGTCAAAATAGTTTGA-AATATT
128 -AAATTTTTCAAACATTCCATGTTCGGGAAATCACATCATTTGGTCAAAATAGTTT-ACAATTTT
* * * *
14500688 GTAAGCAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC
191 ATAAACAAGTTTTGGACT-TTAAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTC
*
14500752 TTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCGTG
254 TTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTG
* * * * * *
14500817 GAAGAACTTTCGATCTTTTCAAAAGCTTATTTACATCAGAATTATTTTTCTCTTGGTTCTTGGAC
319 GACGAACTTCCGAACTTTTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGAC
* *
14500882 GAACTTCCAAACTTGTCAAACACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACGAA
384 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
14500947 CTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
449 CTTCCGAACTTGTCAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACAT
* *
14501012 CCAAACTTGTCAAAAACTTATTTACGTAAGAATTCTTTCTCTTTTGGTTCTTGGACGAACATCCG
514 CCAAACTTCTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCG
* * * *
14501077 AACTTGTCAAACATTTACGATTTCTTTTATAATTTCGGTTCCTAAAAGTATTGAAGGTGATCAAT
579 AACTTGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTAGTCAAGATGATCAAT
*
14501142 TCTTTAGAGAAATTTTACGAACATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTG
644 TCTTTAGAGAAATTTTACCAACATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTG
*
14501207 TCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTTAGAATTGGTTCTCTCT
709 TCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCT
** * * * *
14501272 TGGTTCTTGGACAAACTAT-CGGACTTGTCAAAAATATTTTTACGTGAGAATCGTTTCTCTCTTG
774 TGGTTCTTGGACAAACT-TCCAAACTAGTCAAAAACATATTTACGTGAGAATCATTTCTCTCTTG
* * *
14501336 ATTCTTGGACGAAC-TTTCGAACTGGTC
838 ACTCTTGGACAAACATCT-GAACTGGTC
** *
14501363 AGGAACTTATTTACGTAAGAATTGTTTCTCTCTCGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
14501428 CTTTTACGATTTCTTTTGTAACCTTGGTTCCAAAAACTACTCTAGATAATCCATTCCTTCTAGAA
66 CTTTTACGATTTCTTTTATAA-CTTGGTTCCTAAAAGTATTCAAGATGATCCATTGCTTCTAGAA
* * * *
14501493 ATTTTTCAAACATTCCATGTTCGGAAAATCTCATCATTTGGTCTAAATAGTTTACCATTTTATAA
130 ATTTTTCAAACATTCCATGTTCGGGAAATCACATCATTTGGTCAAAATAGTTTACAATTTTATAA
14501558 ACAAGTTTTGGTA-TTTAAATTAAAAACTTATTTACGTGAGAATTGTT-TCTCTTGGTTCTTGGA
195 ACAAGTTTTGG-ACTTTAAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGA
* *
14501621 CGAACTTCCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGACGA
259 CAAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGA
* *
14501686 GCTTCCGAACTTTTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGACCT
324 ACTTCCGAACTTTTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
*
14501751 TCCAAAATTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
389 TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
14501816 -AGACTTGTCAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCAA
454 GA-ACTTGTCAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCAA
* *
14501880 AGTTCTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCCGAACT
518 ACTTCTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACT
* * *
14501945 TGTCAAACTTTTACGATTTCTTTTATAGCTTCGGTTCCTAAAAGTAGTCAAGATGATCCATTCTT
583 TGTCAAACATTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTAGTCAAGATGATCAATTCTT
* * * * * *
14502010 TCGAGCAATTTTTCCAACATTCCATTCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTT
648 TAGAGAAATTTTACCAACATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTGTCTT
*
14502075 TTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGT
713 TTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGT
* * *
14502140 TCTTGGACGAACTTCCAAACTAGTCAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGCTCT
778 TCTTGGACAAACTTCCAAACTAGTCAAAAACATATTTACGTGAGAATCATTTCTCTCTTGACTCT
*
14502205 TGGACAAACATCTGAACTTGTC
843 TGGACAAACATCTGAACTGGTC
* *
14502227 AAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * * *
14502292 CTTTTATGATTTCTTTTATAACTT-CTATACCTGAAAGTATTCAAGATGATCCACTGTTTCGAGT
66 CTTTTACGATTTCTTTTATAACTTGGT-T-CCTAAAAGTATTCAAGATGATCCATTGCTTCTAGA
* * *
14502356 AATTTTTCAGACATTCCATGCTT-GGGAAATCGCATAATTTGGTCAAAAACTTA-TTTACGTGAG
129 AATTTTTCAAACATTCCATG-TTCGGGAAATCACATCATTTGGTC-AAAA--TAGTTTAC-----
* ** ** **
14502419 AATTGATTCT-CTCTTGGTTCTTGGACGAACTTTCGGACTTGTCAAAAACTTATTTACGTGAGAA
185 AATT--TTATAAAC-AAGTT-TT-G--G-ACTTT---AAAT-T-AAAAACTTATTTACGTGAGAA
* * *
14502483 TTATTTCTCTCTTGAG-TCTTGGACAAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATT
237 TT-GTTCTCTCTTG-GTTCTTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATT
* * * * * *
14502547 ATTTCTCTCTTAGTTCTTGGACTAACTTCCGAACTTGTC-AAAACTTATTTACGTGAGAATTGTT
300 GTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTTTCAAAAACTTATTTACATCAGAATTGTT
* * * * * *
14502611 TCTCTCTTGTTTCTTGAACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGCTTCT
365 TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCT
* * * *
14502676 CTCTTGGTTCTTAGATGAACATCCGAACTTATCAAA
430 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14502712 CTTTTACAAT
Statistics
Matches: 1175, Mismatches: 135, Indels: 59
0.86 0.10 0.04
Matches are distributed among these distances:
862 1 0.00
863 6 0.01
864 709 0.60
865 39 0.03
866 170 0.14
867 7 0.01
871 3 0.00
872 1 0.00
873 6 0.01
874 2 0.00
875 1 0.00
877 2 0.00
878 3 0.00
881 2 0.00
882 1 0.00
883 23 0.02
884 112 0.10
885 86 0.07
886 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (864 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTGGTTCCTAAAAGTATTCAAGATGATCCATTGCTTCTAGAAA
TTTTTCAAACATTCCATGTTCGGGAAATCACATCATTTGGTCAAAATAGTTTACAATTTTATAAA
CAAGTTTTGGACTTTAAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACA
AACTTCCGAACTTGTCAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCGAACTTTTCAAAAACTTATTTACATCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
CAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCAAACT
TCTCAAAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
CAAACATTTACGATTTCTTTTATAACTTCGGTTCCTAAAAGTAGTCAAGATGATCAATTCTTTAG
AGAAATTTTACCAACATTCCATGCACGAGAAATCGCATAATTTGGTCTAAATAGATTGTCTTTTT
GTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTAAGAATTGGTTCTCTCTTGGTTCT
TGGACAAACTTCCAAACTAGTCAAAAACATATTTACGTGAGAATCATTTCTCTCTTGACTCTTGG
ACAAACATCTGAACTGGTC
Found at i:14502285 original size:62 final size:62
Alignment explanation
Indices: 14502103--14502291 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
14502093 TCCTTGAATT
* * *
14502103 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * * * * *
14502165 AAAAACATATTTACGTGAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCTGAACTTGTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14502227 AAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTC
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
14502289 AAA
1 AAA
14502292 CTTTTATGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14502387 original size:340 final size:347
Alignment explanation
Indices: 14501758--14502649 Score: 1117
Period size: 340 Copynumber: 2.6 Consensus size: 347
14501748 CCTTCCAAAA
*
14501758 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAGACTTG
1 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
* * * * * *
14501823 TCAAAAACTTATTTACATGAGAATTCTTTCTCTCTTGGTTCTTGGACGAACATCCAAAGTTCTCA
66 TCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCA
* *
14501888 AAAACTTATTTACGTAAGAATTCTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
131 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * *
14501953 TTTTACGATTTCTTTTATAGCTTCGGTTCCTAAAAGTAGTCAAGATGATCCATTCTTTCGAGCAA
196 TTTTACGATTTCTTTTATAACTTCGATACCTAAAAGTAGTCAAGATGATCCACTCTTTCGAGCAA
* *
14502018 TTTTTCCAACATTCCATTCTCGAGAAATCGCATAATTTGGTC-TAA-A-TA-GT-TTG-TCT-TT
261 TTTTTCCAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATATTACGTATTGTTCTCTT
* * *
14502076 -TT-GTAAAC-AAGTTTTGGTCC
326 GTTCGTAAACGAACTTTCGG-AC
* *
14502096 TTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
1 TTG--TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
* * * *
14502161 AGTCAAAAACATATTTACGTGAGAATTATTTCTCTCTTGGCTCTTGGACAAACATCTGAACTTGT
64 TGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGT
* *
14502226 CAAAAACTTATTTACGTCAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTCAA
129 CAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* * * * * *
14502291 ACTTTTATGATTTCTTTTATAACTTCTATACCTGAAAGTATTCAAGATGATCCACTGTTTCGAGT
194 ACTTTTACGATTTCTTTTATAACTTCGATACCTAAAAGTAGTCAAGATGATCCACTCTTTCGAGC
* *
14502356 AATTTTT-CAGACATTCCATGCTTGGGAAATCGCATAATTTGGTCAAAAACTTATTTACGTGAGA
259 AATTTTTCCA-ACATTCCATGCTCGAGAAATCGCATAATTTGGTC-AAAA--TA-TTACGT----
* **
14502420 ATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGGAC
315 ATTG--T-TCTCTT-GTTCGTAAACGAACTTTCGGAC
* * **
14502457 TTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGAG-TCTTGGACAAACTTCTGAACTT
1 TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG-GTTCTTGGACGAACTTCCAAACTT
* * *
14502521 GTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACTAACTTCCGAACTTGTC
65 GTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTC
* * *
14502586 -AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGAACGAACATCCGAACTTGTCAAA
130 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14502650 AACTTATTTA
Statistics
Matches: 474, Mismatches: 54, Indels: 32
0.85 0.10 0.06
Matches are distributed among these distances:
338 3 0.01
339 2 0.00
340 266 0.56
342 2 0.00
345 1 0.00
347 2 0.00
348 2 0.00
353 3 0.01
357 3 0.01
358 62 0.13
359 111 0.23
360 3 0.01
361 7 0.01
362 7 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (347 bp):
TTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
TCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCA
AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAC
TTTTACGATTTCTTTTATAACTTCGATACCTAAAAGTAGTCAAGATGATCCACTCTTTCGAGCAA
TTTTTCCAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATATTACGTATTGTTCTCTT
GTTCGTAAACGAACTTTCGGAC
Found at i:14502473 original size:62 final size:62
Alignment explanation
Indices: 14502397--14502711 Score: 431
Period size: 62 Copynumber: 5.1 Consensus size: 62
14502387 GCATAATTTG
* *
14502397 GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGGACTT
1 GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* *
14502459 GTCAAAAACTTATTTACGTGAGAATT-ATTTCTCTCTTGAG-TCTTGGACAAACTTCTGAACTT
1 GTCAAAAACTTATTTACGTGAGAATTGA-TTCTCTCTTG-GTTCTTGGACGAACTTCCGAACTT
* *
14502521 GTCAAAAACTTATTTACGTGAGAATT-ATTTCTCTCTTAGTTCTTGGACTAACTTCCGAACTT
1 GTCAAAAACTTATTTACGTGAGAATTGA-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * *
14502583 GTC-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGAACGAACATCCGAACTT
1 GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
* * * * *
14502644 GTCAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGATGAACATCCGAACTT
1 GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
*
14502706 ATCAAA
1 GTCAAA
14502712 CTTTTACAAT
Statistics
Matches: 228, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
61 56 0.25
62 171 0.75
63 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (62 bp):
GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
Found at i:14502660 original size:123 final size:122
Alignment explanation
Indices: 14502397--14502711 Score: 434
Period size: 123 Copynumber: 2.5 Consensus size: 122
14502387 GCATAATTTG
* * *
14502397 GTCAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAACTTTCGGACTTGTC
1 GTCAAAAACTTATTTACGTGAGAATT-ATTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTC
* * *
14502462 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGAGTCTTGGACAAACTTCTGAACTT
65 -AAAACTTATTTACGTGAGAATTATTTCTCTCTTGAGTCTTGAACAAACATCCGAACTT
*
14502521 GTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACTAACTTCCGAACTTGTC
1 GTCAAAAACTTATTTACGTGAGAATTA-TTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTC
* ** *
14502586 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGAACGAACATCCGAACTT
65 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGAGTCTTGAACAAACATCCGAACTT
* * * * *
14502644 GTCAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGA-TGAACATCCGAACTTAT
1 GTCAAAAACTTATTTACGTGAGAATT-ATTCTCTCTTGGTTCTTGGACT-AACTTCCGAACTTGT
14502708 CAAA
64 CAAA
14502712 CTTTTACAAT
Statistics
Matches: 171, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
122 1 0.01
123 111 0.65
124 59 0.35
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (122 bp):
GTCAAAAACTTATTTACGTGAGAATTATTCTCTCTTGGTTCTTGGACTAACTTCCGAACTTGTCA
AAACTTATTTACGTGAGAATTATTTCTCTCTTGAGTCTTGAACAAACATCCGAACTT
Found at i:14502963 original size:62 final size:62
Alignment explanation
Indices: 14502864--14503035 Score: 245
Period size: 62 Copynumber: 2.8 Consensus size: 62
14502854 CCATTGAATT
* *
14502864 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACATGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACATGTC
* * * * * *
14502926 AAAAACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGATCTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACATGTC
* * *
14502988 AAAAACTTATTTATGTAAGAATTTTTTCTCTCTTGGTTCTTGGACAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAA
14503036 TCCGAGCTTG
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 94 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACATGTC
Found at i:14503160 original size:338 final size:339
Alignment explanation
Indices: 14502524--14503370 Score: 1195
Period size: 337 Copynumber: 2.5 Consensus size: 339
14502514 TGAACTTGTC
** * * *
14502524 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTAGTTCTTGGACTAACTTCCGAACTTGTC-AA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
* * *
14502588 AACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGAACGAACATCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
** * * *
14502653 TTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTAGATGAACATCCGAACTTATCAAACTTTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGA-CAACATCCGAACTTACCAAACTTTTA
* *
14502718 CAATTTCTTTTTATAACTTCGGTACATGAAAGTATTCAGGATGATCCATTCTTTCGAGCAATTTT
195 CAATTTCTTTTTATAACTTCAGTACATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTT
* *
14502783 TCAAACATTCCATGCTCGAGAAATCTCATAATTTGGTCTAAATAGTTTG-TCTTTTCGTAAAAAA
260 TCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGAT-TTTT-GTAAAAAA
14502847 GTTTTGG-CCATTGAATT
323 GTTTTGGTCC-TTGAATT
*
14502864 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACATGTCAAA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
* * * *
14502929 AACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGATCTTCCGAACTTGTCAAAAAC
66 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * * *
14502994 TTATTTATGTAAGAATTTTTTCTCTCTTGGTTCTTGGACAA-ATCCGAGCTTGCCAAA-TTGTTA
131 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACAACATCCGAACTTACCAAACTT-TTA
* * * * *
14503057 CGATTTC-TTTTATAACTTCAGTTCCTGTAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTT
195 CAATTTCTTTTTATAACTTCAGTACATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTT
* * *
14503121 TCGAACATTCCATGCTCGAGAAATCACATGATTTGGTCTAAATAGCTTGATTTTTGTAAACAAGT
260 TCAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGATTTTTGTAAAAAAGT
14503186 TTTGGTCCTTGAATT
325 TTTGGTCCTTGAATT
* * *
14503201 AAAAACTTATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAACTTTC-AGACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGA-ACTTGTCAA
* * * * * *
14503265 AAACTTAGTTATGTGAGAATTGTTTCGCTCTTGGTTTTTGGACGAGCTTCCAAACTTGTCAAAAA
65 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
*
14503330 CTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACA
130 CTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACA
14503371 TACTTCCAAA
Statistics
Matches: 453, Mismatches: 49, Indels: 13
0.88 0.10 0.03
Matches are distributed among these distances:
336 1 0.00
337 173 0.38
338 104 0.23
339 23 0.05
340 58 0.13
341 94 0.21
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACAACATCCGAACTTACCAAACTTTTAC
AATTTCTTTTTATAACTTCAGTACATGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
CAAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGATTTTTGTAAAAAAGTT
TTGGTCCTTGAATT
Found at i:14503282 original size:62 final size:62
Alignment explanation
Indices: 14503201--14503496 Score: 425
Period size: 62 Copynumber: 4.8 Consensus size: 62
14503191 TCCTTGAATT
* * *
14503201 AAAAACTTATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAACTTTCAGACTTGTC
1 AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * *
14503263 AAAAACTTAGTTATGTGAGAATTGTTTCGCTCTTGGTTTTTGGACGAGCTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14503325 AAAAACTTATTTACGTGAGAATTA-TTTCTCTCTTGGTTCTTGGAC-ATACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAA-TAGTTTCTCTCTTGGTTCTTGGACGA-ACTTCCAAACTTGTC
* * *
14503387 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14503449 AAAAACTTATTTACGTAAGAATACTTTCTCTTTTGGTTCTTGGACGAA
1 AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAA
14503497 AATCTGAACT
Statistics
Matches: 207, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
61 2 0.01
62 203 0.98
63 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATAGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14503818 original size:463 final size:460
Alignment explanation
Indices: 14502864--14503852 Score: 1462
Period size: 463 Copynumber: 2.1 Consensus size: 460
14502854 CCATTGAATT
* * *
14502864 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACATGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCGAACTTGTCAAA
* * * * *
14502929 AACTTATTTACGTGAGTATTGTTTCTCTCCTGGTTCATGGACGATCTTCCGAACTTGTCAAAAAC
65 AACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCATGGACGAACATCCAAACTTGTCAAAAAC
* ** * *
14502994 TTATTTATGTAAGAATTTTTTCTCTCTTGGTTCTTGGACAAATCCGAGCTTGCCAAATTGTTACG
130 TTATTTACGTAAGAATACTTTCTCTCTTGGTTCTTGGACAAATCCGAACTTACCAAATTGTTACG
* * * * *
14503059 ATTTCTTTTATAACTTCAGTTCCTGTAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTCG
195 ATTTCTTTTATAACTTCAGATCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAATTTTCCG
* *
14503124 AACATTCCATGCTCGAGAAATCACATGATTTGGTCTAAATAGCTTGATTTTTGTAAACAAGTTTT
260 AACATTACATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGATTTTTGTAAACAAGTTTT
*
14503189 GGTCCTTGAATTAAAAACTTATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAACTTTC
325 GGTCCTTGAATTAAAAACATATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAACTTTC
* * * *
14503254 AGACTTGTCAAAAACTTAGTTATGTGAGAATTGTTTCGCTCTTGGTTTTTGGACGAGCTTCCAAA
390 AGACTTGTCAAAAACTTAGTTACGTGAGAATTGTTTCGCTCTTGGTTCTTGGACGAACATCCAAA
14503319 CTTGTC
455 CTTGTC
* *
14503325 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACATACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACA-ACTTCCGAACTTGTCAAA
* *
14503390 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAAC
65 AACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCATGGACGAACATCCAAACTTGTCAAAAAC
* * *
14503455 TTATTTACGTAAGAATACTTTCTCTTTTGGTTCTTGGACGAAAATCTGAACTTATCAAACTT-TT
130 TTATTTACGTAAGAATACTTTCTCTCTTGGTTCTTGGAC--AAATCCGAACTTACCAAA-TTGTT
* *
14503519 ACGATTTCTTTTATAACTTCGGATCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGTAATTTT
192 ACGATTTCTTTTATAACTTCAGATCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAATTTT
* * * * **
14503584 CCGAACATTACATGCTCGGGAAATCGCATAATTTGGTCTTAATAGTTTTTCTTTTTGTAAACAAG
257 CCGAACATTACATGCTCGAGAAATCACATAATTTGGTCTAAATAG-CTTGATTTTTGTAAACAAG
* *
14503649 TTTTGGTCCTTGAATTACAAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAAC
321 TTTTGGTCCTTGAATTAAAAACATATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAAC
* *
14503714 TTTC-GAACTTGTCAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACAT
386 TTTCAG-ACTTGTCAAAAACTTAGTTACGTGAGAATTGTTTCGCTCTTGGTTCTTGGACGAACAT
*
14503777 CCGAACTTGTC
450 CCAAACTTGTC
* *
14503788 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AACTTCCGAACTTGTCAAA
14503853 CTTTTACAAT
Statistics
Matches: 472, Mismatches: 49, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
460 1 0.00
461 151 0.32
463 206 0.44
464 114 0.24
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (460 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAACTTCCGAACTTGTCAAAA
ACTTATTTACATGAGAATTGTTTCTCTCCTGGTTCATGGACGAACATCCAAACTTGTCAAAAACT
TATTTACGTAAGAATACTTTCTCTCTTGGTTCTTGGACAAATCCGAACTTACCAAATTGTTACGA
TTTCTTTTATAACTTCAGATCCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAATTTTCCGA
ACATTACATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGATTTTTGTAAACAAGTTTTG
GTCCTTGAATTAAAAACATATTTACGTGAGAATAGGTTCTCTCTTGGTTCTTGGACGAACTTTCA
GACTTGTCAAAAACTTAGTTACGTGAGAATTGTTTCGCTCTTGGTTCTTGGACGAACATCCAAAC
TTGTC
Found at i:14503847 original size:62 final size:61
Alignment explanation
Indices: 14503667--14503852 Score: 318
Period size: 62 Copynumber: 3.0 Consensus size: 61
14503657 CTTGAATTAC
* * *
14503667 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
14503729 AAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
*
14503790 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
14503852 A
1 A
14503853 CTTTTACAAT
Statistics
Matches: 119, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
61 59 0.50
62 60 0.50
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.37
Consensus pattern (61 bp):
AAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
Found at i:14503953 original size:339 final size:339
Alignment explanation
Indices: 14503325--14504528 Score: 1753
Period size: 339 Copynumber: 3.6 Consensus size: 339
14503315 CAAACTTGTC
** * *
14503325 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC-ATACTTCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGA-ACTTTCGAACTTGTCAA
*
14503389 AAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAA
65 AAACTTATTTACATGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
** * * * *
14503454 CTTATTTACGTAAGAATACTTTCTCTTTTGGTTCTTGGACGAAAATCTGAACTTATCAAACTTTT
129 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
* *
14503519 ACGATTTCTTTTATAACTTCGG-ATCCTGAAAGTATTCAAGATAATCCATTCTTTCGAG-TAATT
194 ACGATTTCTTTTATAACTTAGGTA-CCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAAATT
* * *
14503582 TTCCGAACATTACATGCTCGGGAAATCGCATAATTTGGTCTTAATAGTTTTTCTTTTTGTAAACA
258 TT-CGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
14503647 AGTTTTGGTCCTTGAATT
322 AGTTTTGGTCCTTGAATT
* *
14503665 ACAAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
*
14503730 AACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
66 AACTTATTTACATGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
14503795 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
131 TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
* * **
14503860 AATTTCTTTTATAACTTAGGTACATGAAAGTATTCAAGATGGTCCATTCTTTCGAGCAAATTTTC
196 GATTTCTTTTATAACTTAGGTACCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAAATTTTC
* *
14503925 AAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTCGTAAACAAGTT
261 GAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
*
14503990 TTGGCCCTTGAATT
326 TTGGTCCTTGAATT
* *
14504004 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14504069 AACTTATTTACATGAGTATTATTTCTCTCTTGGTTCATGGACGAACTTCCGAACTTGTCAAAAAC
66 AACTTATTTACATGAGAATT-GTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
* * *
14504134 TTATTTATGTAAGAATTTTTTCTCTCTTGGTTCTTGGAC-AA-ATCCGAGCTTGTCAAA-TTGTT
130 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT-TT
* * *
14504196 ACGATTTCTTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATATTCCATTCTGTT-GAGCAATT
194 ACGATTTCTTTTATAACTT-AGGTACCTGAAAGTATTCAAGATAATCCATTCT-TTCGAGCAAAT
* * * *
14504259 TTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGCTTGTCTTTTTGGAAACA
257 TTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACA
14504324 AGTTTTGGTCCTTGAATT
322 AGTTTTGGTCCTTGAATT
* * * * *
14504342 AAAAACTTATTTACGTGAGAATAGGATCTCTCTTGGTTCTTCGACGAACTTTCGGACTTGTTAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14504407 AACTTATTTACGTGAGAATTGAT-TCTCTTGGTTCTTGGAGGAACTTCCGAACTTGTCAAAAAAT
66 AACTTATTTACATGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
* * * *
14504471 TATTTACGTGAGAATTGTTTC-CTTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAA
131 TATTTACGTAAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14504529 AAGTTATTTA
Statistics
Matches: 782, Mismatches: 72, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
335 1 0.00
336 70 0.09
337 5 0.01
338 234 0.30
339 309 0.40
340 162 0.21
341 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATTTACATGAGAATTGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTAGGTACCTGAAAGTATTCAAGATAATCCATTCTTTCGAGCAAATTTTC
GAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
TTGGTCCTTGAATT
Found at i:14504101 original size:62 final size:62
Alignment explanation
Indices: 14504004--14504190 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14503994 CCCTTGAATT
** *
14504004 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
* * * *
14504066 AAAAACTTATTTACATGAGTATTATTTCTCTCTTGGTTCATGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
* * * *
14504128 AAAAACTTATTTATGTAAGAATTTTTTCTCTCTTGGTTCTTGGACAAA--TCCGAGCTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
14504188 AAA
1 AAA
14504191 TTGTTACGAT
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
60 14 0.13
62 96 0.87
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
Found at i:14504416 original size:62 final size:62
Alignment explanation
Indices: 14504342--14504649 Score: 415
Period size: 62 Copynumber: 5.0 Consensus size: 62
14504332 TCCTTGAATT
* ** * * * *
14504342 AAAAACTTATTTACGTGAGAATAGGATCTCTCTTGGTTCTTCGACGAACTTTCGGACTTGTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14504404 AAAAACTTATTTACGTGAGAATTG-AT-TCTCTTGGTTCTTGGAGGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14504464 AAAAAATTATTTACGTGAGAATTGTTTC-CTTCTTGGGTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * ** *
14504526 AAAAAGTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTGGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14504588 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14504650 GAACTTTTAC
Statistics
Matches: 219, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
60 52 0.24
61 4 0.02
62 162 0.74
63 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14504974 original size:215 final size:215
Alignment explanation
Indices: 14504588--14505087 Score: 612
Period size: 215 Copynumber: 2.3 Consensus size: 215
14504578 CGAACTGGTC
* * *
14504588 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCGAA
1 AAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCGAA
** * * * * *
14504653 CTTTTACGATTTCTTTTATAACTTCGGTACCTAAAAGTATTCAAGATGATCCATTCTTTTGAGCA
65 CTTGCACGAGTTCTTTTATAACTTAGGTACATAAAAGTAGTCAAGATGATCCATTCTTTCGAGCA
* * *
14504718 ATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAA
130 ATTTTTCAAACATTCCATACTCGGAAAATCCCATAATTTGGTCTAAATAGATTGTCATTTTGTAA
**
14504783 ACAAGTTTTGATGTTTAAATT
195 ACAAGTTTTGATCCTTAAATT
* * * **
14504804 ATAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATGGAC-TGTCAAACTT-TTTA
1 AAAAACTTATTTACGTGAGAATTGT-TCTCTCTTGGTTCTTGGATGAACAT-CCAAACTTGTCGA
** * *
14504866 CACTTGCACGAGTTCTTTTATAACTTAGGTTTATAAAAGTAGTCAAGTTGATCCATTCTTTCGAT
64 -ACTTGCACGAGTTCTTTTATAACTTAGGTACATAAAAGTAGTCAAGATGATCCATTCTTTCGAG
* * *
14504931 CAATTTTTCAAACATTCCATACTC-GAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
128 CAATTTTTCAAACATTCCATACTCGGA-AAATCCCATAATTTGGTCTAAATAGATTGTCATTTTG
* *
14504995 TAAACAAGTTTTGTTCCTTGAATT
192 TAAACAAGTTTTGATCCTTAAATT
* * * *
14505019 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGCTCTTGGATGAACTTTCGAACTTGTCAGA
1 AAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTC-GA
14505084 ACTT
64 ACTT
14505088 ATTTATGTGA
Statistics
Matches: 240, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
214 5 0.02
215 177 0.74
216 51 0.21
217 6 0.03
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCGAAC
TTGCACGAGTTCTTTTATAACTTAGGTACATAAAAGTAGTCAAGATGATCCATTCTTTCGAGCAA
TTTTTCAAACATTCCATACTCGGAAAATCCCATAATTTGGTCTAAATAGATTGTCATTTTGTAAA
CAAGTTTTGATCCTTAAATT
Found at i:14505181 original size:62 final size:62
Alignment explanation
Indices: 14505019--14505268 Score: 335
Period size: 62 Copynumber: 4.0 Consensus size: 62
14505009 TCCTTGAATT
* *
14505019 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGCTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
* * * *
14505081 -AGAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTC-GAACTTGTC
*
14505142 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
* * ** * * *
14505204 AAAAACTTATTTACGTAAGAATTGTTTCTGTCTTATTTCATT-GATGAACATCCGAACATGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC-TTGGATGAACTTTCGAACTTGTC
14505266 AAA
1 AAA
14505269 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 18, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
60 3 0.02
61 51 0.31
62 107 0.64
63 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTC
Found at i:14505651 original size:616 final size:616
Alignment explanation
Indices: 14504404--14505823 Score: 2071
Period size: 616 Copynumber: 2.3 Consensus size: 616
14504394 CGGACTTGTT
* * * *
14504404 AAAAACTTATTTACGTGAGAATT-GAT-TCTCTTGGTTCTTGGAGGAACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC-AG
* * *
14504467 AAATTATTTACGTGAGAATTGTTTC-CTTCTTGGGTCTTGGACGAACTTCCAAACTTGTCAAAAA
65 AACTTATTTATGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
* * * *
14504531 GTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTGGTCAAAAACTT
129 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTT
* * *
14504596 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCGAACTTTTACG
194 ATTTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACATGTCAAACTTTTACG
** * * * * *
14504661 ATTTCTTTTATAACTTCGGTACCTAAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTCG
259 ATTTCTTTTATAACTTCAATACCAAAAAGTATTCAAGATGATCCATCCCTTTCAGAAATTTTTCG
14504726 AACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTT
324 AACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTT
** * *
14504791 TGATGTTTAAATTATAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGACTGTC
389 TGATCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGAATGTC
* * * *
14504856 AAACTTTTTACACTTGCACGAGTTCTTTTATAACTTAGGTTTATAAAAGTAGTCAAGTTGATCCA
454 AAACTTGTTAAACTTGCACGAGTTCTTTTATAACTTAGGTTCATAAAAGTAGTCAAGATGATCCA
* * * * * *
14504921 TTCTTTCGATCAATTTTTCAAACATTCCATACTCGAGAAATCGCATAATTTGGTCTAAATAGTTT
519 TTCTTTCGATCAAATTTCCAAACATCCCATACTCGAGAAATCACATAATTTGGTCAAAAAAGTTT
** ** *
14504986 GTCTTTTTGTAAACAAGTTTTGTTCCTTGAATT
584 GTCAGTTTGTAAACAAGTTTTGTGACTTGAATG
* *
14505019 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGCTCTTGGATGAACTTTCGAACTTGTCAGA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAGA
*
14505084 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAAACT
66 ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* * * *
14505149 TATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTAT
131 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTAT
* * *
14505214 TTACGTAAGAATTGTTTCTGTCTTATTTCATT-GATGAACATCCGAACATGTCAAACTTTTACGA
196 TTACGTAAGAATTGTTTCTCTCTTAGTTC-TTGGACGAACATCCGAACATGTCAAACTTTTACGA
* * * *
14505278 TTTCTTTTATAAGTTCAATTCCAAAAAGTATTCAAGATTATCCATCCCTTTCAGAAATTTTTTGA
260 TTTCTTTTATAACTTCAATACCAAAAAGTATTCAAGATGATCCATCCCTTTCAGAAATTTTTCGA
14505343 ACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTT
325 ACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTT
* *
14505408 GATCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGAATTTCG
390 GATCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGAATGTCA
* * * * ** *
14505473 AACTTGTTAAACTTTCATGAGTTCTTTTGTAACTTAGGTTCCTTTAAGTATTCAAGATGATCCAT
455 AACTTGTTAAACTTGCACGAGTTCTTTTATAACTTAGGTTCATAAAAGTAGTCAAGATGATCCAT
* *
14505538 TCCTTT-G-TGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAAAAGTT
520 T-CTTTCGAT-CAAATTTCCAAACATCCCATACTCGAGAAATCACATAATTTGGTCAAAAAAGTT
*
14505601 TGTCAGTTTGTAAACAAGTTTTG-GACTGTTAATG
583 TGTCAGTTTGTAAACAAGTTTTGTGACT-TGAATG
* * *
14505635 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAGA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAG-
*
14505700 AACTTATTTATGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
65 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * *
14505765 TTACTTACGTCAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAA
130 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14505824 CTTTTACGAT
Statistics
Matches: 718, Mismatches: 79, Indels: 14
0.89 0.10 0.02
Matches are distributed among these distances:
615 26 0.04
616 539 0.75
617 153 0.21
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (616 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAGA
ACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTAT
TTACGTAAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCGAACATGTCAAACTTTTACGAT
TTCTTTTATAACTTCAATACCAAAAAGTATTCAAGATGATCCATCCCTTTCAGAAATTTTTCGAA
CATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTTTG
ATCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGAATGTCAA
ACTTGTTAAACTTGCACGAGTTCTTTTATAACTTAGGTTCATAAAAGTAGTCAAGATGATCCATT
CTTTCGATCAAATTTCCAAACATCCCATACTCGAGAAATCACATAATTTGGTCAAAAAAGTTTGT
CAGTTTGTAAACAAGTTTTGTGACTTGAATG
Found at i:14505735 original size:62 final size:62
Alignment explanation
Indices: 14505638--14505823 Score: 282
Period size: 62 Copynumber: 3.0 Consensus size: 62
14505628 GTTAATGAAT
* * *
14505638 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAGA
1 AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14505700 AACTTATTTATGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14505762 AACTTACTTACGTCAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAA
1 AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14505824 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (62 bp):
AACTTACTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14506165 original size:550 final size:553
Alignment explanation
Indices: 14505083--14506373 Score: 1910
Period size: 550 Copynumber: 2.3 Consensus size: 553
14505073 AACTTGTCAG
*
14505083 AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCTAAACTTGTCAAAAA
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-AAACTTGTCAAAAA
* * * *
14505147 CTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTT
65 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTT
* ** * * *
14505212 ATTTACGTAAGAATTGTTTCTGTCTTATTTCATTGATGAACATCCGAACATGTCAAACTTTTACG
130 ATTTACGTAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTTTTACG
** * * * *
14505277 ATTTCTTTTATAAGTTCAATTCCAAAAAGTATTCAAGATTATCCATCCCTTTCAGAAATTTTTTG
195 ATTTCTTTTATAACCTCAATTCCAAAAACTATTCAAGATAATCCATCCCTTTCAGAAATATTTTC
* * * *
14505342 AACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAGATTGTCATTTTGTAAACAAGTTT
260 AACATTCCATACTCAGAAAATCCCATCATTTGGTCTAAATAGATTGTAATTTTGTAAACAA--TA
* * * * * * **
14505407 TGATCCTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATGGAATTTC
323 AGATCCTTAAATTAAAAACATATGTACATGAGAATAGTATCTCCTTGGTCCTTGGATCAAATTTC
* * * * *
14505472 GAACTTGTTAAACTTTCATGAGTTCTTTTGTAACTTAGGTTCCTTTAAGTATTCAAGATGATCCA
388 GAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCA
14505537 TTCCTTTGTGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAAAAGTTT
453 TTCCTTTGTGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAAAAGTTT
14505602 GTCAGTTTGTAAACAAGTTTTGGACTGTTAATGAAT
518 GTCAGTTTGTAAACAAGTTTTGGACTGTTAATGAAT
* * *
14505638 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAGAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAAC
* *
14505703 TTATTTATGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* *
14505768 CTTACGTCAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTTTTACGA
131 TTTACGTAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTTTTACGA
* ** *
14505833 TTTCTTTTATTACCTCGGTTCCAAAAACTATTCAAGATAATCCATTCC-TTCTAGAAA-ATTTTC
196 TTTCTTTTATAACCTCAATTCCAAAAACTATTCAAGATAATCCATCCCTTTC-AGAAATATTTTC
** *
14505896 AACATTCCATACTCAGAAAATCCTGTCATTTGGTCTAAATAGTTTGTAATTTTGTAAACAA-AAG
260 AACATTCCATACTCAGAAAATCCCATCATTTGGTCTAAATAGATTGTAATTTTGTAAACAATAAG
*
14505960 -TCTTTAAATTAAAAACATATGTACATGAGAATAGTATCTCCTTGGTCCTTGGA-CAAACTTTCG
325 ATCCTTAAATTAAAAACATATGTACATGAGAATAGTATCTCCTTGGTCCTTGGATCAAA-TTTCG
14506023 AACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
389 AACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCAT
** * *
14506088 TCCTTTGTGCAAATTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTG
454 TCCTTTGTGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAAAAGTTTG
* *
14506153 TCATTTTGTAAACAAGTTTTGGACTGTTAATTAAT
519 TCAGTTTGTAAACAAGTTTTGGACTGTTAATGAAT
* * * *
14506188 AACTTAGTTATGTCAGAATTGTTTCTCTCTTGGTTTTTGGACAAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAAC
**
14506253 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTTACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * * *
14506318 TTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
131 TTTACGTAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAA
14506374 AACTTATTTA
Statistics
Matches: 662, Mismatches: 71, Indels: 11
0.89 0.10 0.01
Matches are distributed among these distances:
549 2 0.00
550 376 0.57
551 1 0.00
554 62 0.09
555 218 0.33
556 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (553 bp):
AACTTAGTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTAAGAATTGTTTCTCTCTTGGTTCATGGACGAACATCCGAACTTGTCAAACTTTTACGA
TTTCTTTTATAACCTCAATTCCAAAAACTATTCAAGATAATCCATCCCTTTCAGAAATATTTTCA
ACATTCCATACTCAGAAAATCCCATCATTTGGTCTAAATAGATTGTAATTTTGTAAACAATAAGA
TCCTTAAATTAAAAACATATGTACATGAGAATAGTATCTCCTTGGTCCTTGGATCAAATTTCGAA
CTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTTGTGCAAATTTCCAAACATCCCATGCTCGAGAAATCACATCATTTGGTCAAAAAAGTTTGTC
AGTTTGTAAACAAGTTTTGGACTGTTAATGAAT
Found at i:14506416 original size:62 final size:62
Alignment explanation
Indices: 14506188--14506435 Score: 325
Period size: 62 Copynumber: 4.0 Consensus size: 62
14506178 GTTAATTAAT
* * * * * *
14506188 AACTTAGTTATGTCAGAATTGTTTCTCTCTTGGTTTTTGGACAAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* ** *
14506250 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTTACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14506312 AACTTATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
** * * * * *
14506374 AACTTATTTACGTAAGAATACTTTCTCTTTTGGTTTTTGGACGAAAATCCAAATTTATCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14506436 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 166 1.00
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14506770 original size:62 final size:62
Alignment explanation
Indices: 14506589--14506837 Score: 358
Period size: 62 Copynumber: 4.0 Consensus size: 62
14506579 CTTGAATTAC
* * * * *
14506589 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
*
14506651 AAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
*
14506712 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* ** * * *
14506774 AAACTTATTTACGTAAGAATACTTTCTCT-TTCGGTTCTTGGATGAAAATCCGAACTTATCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGACGAACATCCGAACTTGTCAA
14506836 AA
1 AA
14506838 TTTTATGATT
Statistics
Matches: 173, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
61 61 0.35
62 112 0.65
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (62 bp):
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
Found at i:14507151 original size:123 final size:124
Alignment explanation
Indices: 14506989--14507236 Score: 399
Period size: 123 Copynumber: 2.0 Consensus size: 124
14506979 CTTGAATTAC
* *
14506989 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAA
1 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
* * * *
14507054 CTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
66 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAA
* * * *
14507112 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAGAAA
1 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
14507177 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAA
66 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAA
14507236 A
1 A
14507237 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
123 77 0.68
124 37 0.32
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (124 bp):
AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAA
Found at i:14507170 original size:62 final size:62
Alignment explanation
Indices: 14506989--14507236 Score: 399
Period size: 62 Copynumber: 4.0 Consensus size: 62
14506979 CTTGAATTAC
* * * *
14506989 AAACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* *
14507051 AAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* *
14507112 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAG
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
* *
14507174 AAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAA
1 AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
14507236 A
1 A
14507237 CTTTTACGAT
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 61 0.35
62 115 0.65
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (62 bp):
AAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAA
Found at i:14507183 original size:400 final size:401
Alignment explanation
Indices: 14505996--14511506 Score: 3210
Period size: 400 Copynumber: 13.8 Consensus size: 401
14505986 GAGAATAGTA
* * * * * *
14505996 TCTC-CTTGGTCCTTGGAC-AAACTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTT-
1 TCTCTCTTGGTTCTTGGACGAAA-ATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTC
* * * * *
14506058 AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTT-GTGCAA-ATTTCTGAACATTCCATGCTC
65 A-GATCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGCAATTTTTC-GAACATTCCATGCTC
* * * * * *
14506121 GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-ACTGTTAATT
127 GGGAAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCT-TGAATT
* * * * * * * *
14506185 AATAACTTAGTTATGTCAGAATTGTTTCTCTCTTGGTTTTTGGACAAACTTCCAAACTTGTCAAA
191 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAA
** *
14506250 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTTACTTCCAAACTTGTCAAAAAC
256 AACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* * *
14506315 TTATTTACATTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTA
320 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTA
*
14506380 TTTACGTAAGAATACTT
385 TTTACGTAAGAATTCTT
* * * *
14506397 TCTCTTTTGGTTTTTGGACGAAAATCCAAATTTATCAAACTTTTACGATTTCTTTTATAACTTCA
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * * *
14506462 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGGGCAATTTTTCGAATATTACATGCTCAGGA
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
** *
14506527 AATCGCATAATTTGGTCTTAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTACAAA
131 AATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
* *
14506592 CATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTT
196 CTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTT
14506657 ATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
261 ATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
*
14506722 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAAACTTATTTACG
326 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACG
*
14506787 TAAGAATACTT
391 TAAGAATTCTT
* * * *
14506798 TCTCT-TTCGGTTCTTGGATGAAAATCCGAACTTATCAAAATTTTATGATTTCTTTTATAACTTT
1 TCTCTCTT-GGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTC
* * *
14506862 AGATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTCCGAACATTACATGCTTGGG
65 AGATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
* ** *
14506927 GAATCGCATAATTTGGTCTTAATAGTTTGTCTTTTTGTAAACAA-TTTTGGTCCTTGAATTACAA
130 AAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAA
* * *
14506991 ACATATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACT
195 ACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACT
*
14507056 TATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATT
260 TATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATT
* *
14507121 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAGAAACTTATTTAC
325 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTAC
*
14507186 GTAAGAATTGTT
390 GTAAGAATTCTT
* * * *
14507198 TCTCTCTTGGTTCTTCGACGAACATCCGAACTTGTCAAACTTTTACGATTT-TTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * *
14507262 GTTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTC-GAA
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* * * * *
14507326 AATCGTAAAATTTGGTCAAAATAGTTTGTCTTTTCGTAAACAAGTTTTTGTCCTTGAGTTAAAAA
131 AATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
* *
14507391 CTTATTTACGTGAGAATTGCTTCTGTCTTGGTTCTTGGACAAATTTTCGAACTTGTCAAAAACTT
196 CTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTT
* * * * * *
14507456 ATTTACGAGAGTATTGTT-TCTCTGCTGGTTCGTGGACGAACTT-AGAACTGGTCAAGAACTTAT
261 ATTTACGTGAGAATTGTTCTCTCT--TGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* * *
14507519 TTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACG-A-ATCTGAACTTGTC--AAAC-T-TTTA
324 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTA
*
14507578 C----GATTTCTT
389 CGTAAGAATTCTT
* * * * * * * * * *
14507587 T-TATAACTTCGTTTCCT-GA--AAGTAT-TGAAGTTGATC-CA-TTCTTTCGAGTAAT-TTTTC
1 TCTCT--CTT-GGTTCTTGGACGAA-AATCCGAACTT-ATCAAACTT-TTACGA-T-TTCTTTTA
* * ** * ** * * * * *
14507644 GAACATTCCATGCTCGGGAAATCGCA-T-AATTTGATCTAAATATTTTG-TC-A--TTTCGTAAA
58 TAAC-TT-CA-GATCCTGAAA--GTATTCAAGATGATC-CATTCTTTCGAGCAATTTTTCG--AA
** ** * *** * * * * * * *
14507703 CGAGTT-TTTG-TCCTTGAATTAAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCT-TG
115 C-A-TTCCATGCT-CGGGAAAT-CGCA-TAATTT-GGTCAAAATAG-TT-TGTCTT--TT-TGTA
* * * ** * **
14507765 GACGAA-CTTTCGAACTTG--TCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTG
169 AAC-AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTG
* * *
14507827 GACAAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGAC
233 GACAAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGAATT-GTTCTCTCTTGGTTCTTGGAC
* *
14507892 GAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAA
297 GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
14507957 CATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTT
362 CATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTCTT
* * *
14507997 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTC-
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * * *
14508061 GGTACATGAAAGTATTCAAGATGATCCATTCTTTCGAGCTATTTTTCAAACATTCCATGCTCGGG
66 GAT-CCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
* * * *
14508126 AAATCGTATAATTTGGTCTAAATAGTTTGTCTTTTCGTAAACAAGTTTTGGCCCTTGAATTAAAA
130 AAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAA
14508191 ACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACT
195 ACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACT
* * * *
14508256 TATTTACATGAGTATTGTTTCTCTCCTGGTTCATGGACGAACTTCCGAACTTGTCAAAAACTTAT
260 TATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* * * *
14508321 TTATGTAAGAA-T-TTTCTCTCTTGGTTCTTGGAC-AA-ATCCGAGCTTGTC--AAA-TT-GTTA
324 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTA
*
14508378 C----GATTTCTT
389 CGTAAGAATTCTT
** * * * * ** * **
14508387 T-TAGAACTTCAGTTCCT-GA--AAGTATTC-AAGATATTC-CA-TTCTGT-CGAGCAAT-TTTT
1 TCT--CTCTT-GGTTCTTGGACGAA-AATCCGAACTTA-TCAAACTT-T-TACGA--TTTCTTTT
** * * * * **** **** ** *
14508443 CGAACATTC-CATGCTCGAGAA--A-TC-ACATAATTTGGTCTAAATAGCTTGTCTTTTTGTAAA
57 ATAAC-TTCAGATCCT-GA-AAGTATTCAAGATGATCCATTCTTTCGAGC-AAT-TTTTCG--AA
* * ** * *** * * * *
14508503 CAAGTT--TTGGTCCTTGAATTAAAAACTTATTTACGT-AAGAATAGGATCTCTCTTGGTTCT-T
115 C-A-TTCCATGCT-CGGGAAAT-CGCA-TAATTT-GGTCAA-AATA-G-TTTGTCTT--TT-TGT
** * * * *
14508564 GGACGAACTTTTGG-ACTTG--TCAAAAACTTATTTAAGTGAGAATTG-TT-TCTCTTGGTTCTT
168 AAAC-AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTT
** * *
14508624 GGATGAAC-TTCTGAACTTGTCAAAAAATTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGG
232 GGACAAACTTTC-GAACTTGTCAAAAACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGG
* * * *
14508688 ATGAACTTCCAAACTTGTCAAAAAGTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
295 ACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * * *
14508753 AACAACCGAACTAGTCAAAAACTTATTTACATAGGAATTGTT
360 AACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTCTT
* * * * *
14508795 TCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCGAACTTTTACGATTTTTTTTATAACTTC-
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * * * *
14508859 GGTACCTAAAAGTATTCAAGATGATCCATTCTTTTGAGCAATTTTTCGAACATTGCATGCTCGGA
66 GAT-CCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGG
* * * * * * ** * * **
14508924 AAATC-CATTATTT-AT-GAGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCT-GAACTTG
130 AAATCGCATAATTTGGTCAAAATAGTT-TGTCT-T--T--TT-GTAAAC-AAGTTTTGGTCCTTG
* * * * * * *
14508985 --TCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
187 AATTAAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGT
* * * *
14509048 C--AAAC-T-TTTAC----G-A-T-TTCT-T-TT-ATAACTT---CG--GTTCCAAAAACTAT-T
252 CAAAAACTTATTTACGTGAGAATTGTTCTCTCTTGGT-TCTTGGACGAACTTCC--GAACT-TGT
* * ** ** * *
14509093 CAAGATAA-TCCATTCCTTC-T-AGAAATT-TTT-TGAACATTCCATGCTTGGA--AA-ATCCCA
313 CAA-A-AACT-TATT--TACGTGAG-AATTGTTTCT-CTC-TT-GGTTCTTGGACGAACATCCGA
* * * * ** * *
14509150 TCATTTGGTC-TAAA-TTGTTT--GTCA-TTTTGTAA
369 --ACTT-GTCAAAAACTTATTTACGTAAGAATTCT-T
* ** * ** ** * ** * * * * * *
14509182 ACAAGTTTTGG-TCTTTAAATTAAAA-ACTTATTTACGTGAGAATTGTATCTCCTTG-GTTCTTG
1 TC-TCTCTTGGTTC-TTGGACGAAAATCCGAACTTA--TCA-AACT-T-T-TAC--GATTTCTTT
* * * * * * * * * **
14509244 CATAAACTTTCA-AACTTGTCAAACT-TTCACGA-GTTCTTTTATAACTTTGGTTCCTTAAAGTA
56 TAT-AAC-TTCAGATCCTG--AAAGTATTCAAGATGATC---CAT-TCTTTCG-AGC---AA-T-
** * **** * *
14509306 TTCAAGACGATACATTCCTTTGTGCAAATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTT
107 TT---TTCGA-ACATTCC---ATGC---TCGGGAAA---T-C--G--C-ATAATT---------T
*** ** * *
14509371 GGTCAAAATAGTTTGAAATTTTGTAAACAAGTTTTGGATTGTT-AATTAATAACTTAGTTACGTG
144 GGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG-TCCTTGAATTAAAAACTTATTTACGTG
* * * *
14509435 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGA
208 AGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTTATTTACGTGAGA
* * *
14509500 ATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATT
273 ATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATT
* * * * *
14509565 GTTTCTCTCTTGGTTCCTGGACCAATATCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTT
337 GTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATTCTT
* * * *
14509630 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC----TATTTT-TAACTTCG
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * *
14509690 GTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATCTTTCGAACATTCCATGCTCGAGA
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
*
14509755 AATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTTGTGAACAAGTTTTGGTCCTTGAATTAAAA
131 AATCGCATAATTTGGTCA-AAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAA
* * * * * * * *
14509819 ACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTAAAAAACT
195 ACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACT
* * * *
14509884 TATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCAAACTAGTCAAAAACTTAT
260 TATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
*
14509949 TTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCC-ACACTTGTCAAAAACTTATTT
324 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGA-ACTTGTCAAAAACTTATTT
*
14510013 ACGTAAGAATT-GT
388 ACGTAAGAATTCTT
* * * * * *
14510026 T-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * *
14510090 GTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTGTTT-GAACATTCCATGCTCGGG
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT-TTTCGAACATTCCATGCTCGGG
*
14510154 AAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTGAAA-AAGTTTTGGTCCTTGAATTAAA
130 AAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGT-AAACAAGTTTTGGTCCTTGAATTAAA
* *
14510218 AACTTATTTACGTGAGAGTTG-TGTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAAA
194 AACTTATTTACGTGAGAATTGCT-TCTCTCTTGGTTCTTGGACAAACTTTC-GAACTTGTCAAAA
* * *
14510281 ACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC--AAAC-
257 ACTTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
* * *
14510343 T-TTTAC----GATTTCTTT-TATAACTTCGGTTC-----C-AA-A----AACTAT-TCAAGATA
321 TATTTACGTGAGAATTGTTTCTCT--CTT-GGTTCTTGGACGAACATCCGAACT-TGTCAA-A-A
* *
14510390 A-TCCATTCCTTC-T-AGAAATT-TT
380 ACT-TATT--TACGTAAG-AATTCTT
*** ** * * * *
14510412 TCGAACATTCCATGCTT-G--GAAAATCCCATCATTTGGTCTAAA-TTTT----TTGTCATTTGT
1 TCTCTC-TT-GGTTCTTGGACGAAAATCCGA--ACTT-ATC-AAACTTTTACGATT-TC-TTT-T
* ** * * * *** * ***
14510469 A-AAC--AAG-TTTTG---GTCTTTAA-ATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTC-
57 ATAACTTCAGATCCTGAAAGTATTCAAGATGATCCA-TTCTTT-C--GAGCAATT-TTTCGAACA
** * * * ** * * * **
14510524 TT-GGTTCTTGGACGAACTTTCA-AACTT-GTCAAACT--TTCACGAATTCTTT-TATAAC----
117 TTCCATGCTCGG--GAAATCGCATAATTTGGTCAAAATAGTT--TGTCTT-TTTGTA-AACAAGT
* * * *** **
14510579 TTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT--GTGCA-AATT--TCCAAACATTCCA
176 TTTGG-TCCTT---GAATT-AA-A--A-AC-TT-ATTTACGTG-AGAATTGCTTCTCTC-TT-GG
* * * * * * ** **
14510639 TGC-TCGAGAAA---TCGCATCATTTGGTC-AAAA--TAATT---TGA-AATT-TTGTAAAC-AA
227 TTCTTGGACAAACTTTCG-A--ACTT-GTCAAAAACTTATTTACGTGAGAATTGTTCT-CTCTTG
* *
14510691 GTT-TTGGACTG---TT---AA--T-T-AACAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGT
287 GTTCTTGGAC-GAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * * ** *
14510745 TCTTGGCCCAATATTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGC-T
351 TCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACGTAAGAATT-CTT
* * * **
14510796 TCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC----T-ATTTATAACTTTG
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * * * *
14510856 GTTCCAGAAAGTGTTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAACATTCCATGCTCGAGA
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
14510921 AATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAA
131 AATCGCATAATTTGGTCA-AAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAA
* * * * * *
14510985 ACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCGAA-TTGGTAAAAAAC
195 ACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTT-GTCAAAAAC
* *
14511049 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAACTTA
259 TTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
* * * * *
14511114 TTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTCAAAAACTTATTT
323 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTT
*
14511179 ACGTAAGAATT-GT
388 ACGTAAGAATTCTT
* * * * * *
14511192 T-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCG
1 TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
* * * * * *
14511256 GTTCCAGAAAGTATTCAAGAT-ATCCATTCTTTCAAGCAATTTGTCTAACATTCCATGCTCAGGA
66 GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* *
14511320 AATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAA
131 AATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
* * *
14511385 CTTATTTACGTGAGAGTTG-TTACTCTCCTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAAAAC
196 CTTATTTACGTGAGAATTGCTT-CTCTCTTGGTTCTTGGACAAACTTTC-GAACTTGTCAAAAAC
* * *
14511448 TTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
259 TTATTTACGTGAGAATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14511507 CTTTTACGAT
Statistics
Matches: 3957, Mismatches: 736, Indels: 836
0.72 0.13 0.15
Matches are distributed among these distances:
370 1 0.00
371 4 0.00
372 1 0.00
373 6 0.00
375 5 0.00
376 7 0.00
377 9 0.00
378 26 0.01
379 28 0.01
380 16 0.00
381 29 0.01
382 55 0.01
383 60 0.02
384 47 0.01
385 47 0.01
386 43 0.01
387 58 0.01
388 76 0.02
389 60 0.02
390 72 0.02
391 34 0.01
392 31 0.01
393 37 0.01
394 31 0.01
395 110 0.03
396 138 0.03
397 325 0.08
398 126 0.03
399 536 0.14
400 650 0.16
401 323 0.08
402 420 0.11
403 19 0.00
404 46 0.01
405 17 0.00
406 34 0.01
407 33 0.01
408 42 0.01
409 29 0.01
410 36 0.01
411 15 0.00
412 6 0.00
415 8 0.00
418 4 0.00
419 1 0.00
421 7 0.00
422 3 0.00
424 1 0.00
425 4 0.00
426 1 0.00
427 2 0.00
428 5 0.00
429 4 0.00
430 5 0.00
431 61 0.02
432 3 0.00
433 8 0.00
434 12 0.00
435 17 0.00
436 7 0.00
437 3 0.00
439 1 0.00
440 1 0.00
441 1 0.00
442 2 0.00
443 5 0.00
444 13 0.00
445 20 0.01
446 21 0.01
447 20 0.01
448 21 0.01
449 4 0.00
450 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (401 bp):
TCTCTCTTGGTTCTTGGACGAAAATCCGAACTTATCAAACTTTTACGATTTCTTTTATAACTTCA
GATCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
AATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAA
CTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTT
ATTTACGTGAGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTT
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACTTATTTACG
TAAGAATTCTT
Found at i:14507461 original size:62 final size:60
Alignment explanation
Indices: 14507386--14507571 Score: 221
Period size: 61 Copynumber: 3.0 Consensus size: 60
14507376 TCCTTGAGTT
* * *
14507386 AAAAACTTATTTACGTGAGAATTGCTTCTGTCTTGGTTCTTGGACAAATTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TTT-GAACTTGTC
* * * * *
14507448 AAAAACTTATTTACGAGAGTATTGTTTCTCTGC-TGGTTCGTGGACGAACTTAGAACTGGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAA-TTTGAACTTGTC
* * * *
14507509 AAGAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGGACGAATCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTGAACTTGTC
14507569 AAA
1 AAA
14507572 CTTTTACGAT
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
60 12 0.12
61 48 0.47
62 42 0.41
63 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (60 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATTTGAACTTGTC
Found at i:14507820 original size:62 final size:62
Alignment explanation
Indices: 14507723--14508035 Score: 511
Period size: 62 Copynumber: 5.0 Consensus size: 62
14507713 TCCTTGAATT
* *
14507723 AAAAACTTATTTACGTGAGAATTGA-TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATT-ATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
14507785 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACAAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14507847 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14507909 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGTTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14507971 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
14508033 AAA
1 AAA
14508036 CTTTTACAAT
Statistics
Matches: 238, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
61 1 0.00
62 237 1.00
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14508286 original size:62 final size:61
Alignment explanation
Indices: 14508187--14508371 Score: 241
Period size: 62 Copynumber: 3.0 Consensus size: 61
14508177 CCCTTGAATT
* *
14508187 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAG-ATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
* * * *
14508249 AAAAACTTATTTACATGAGTATTGTTTCTCTCCTGGTTCATGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAG-ATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
* * * *
14508311 AAAAACTTATTTATGTAAGAAT-TTTCTCTCTTGGTTCTTGGACAAA--TCCGAGCTTGTC
1 AAAAACTTATTTACGTGAGATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
14508369 AAA
1 AAA
14508372 TTGTTACGAT
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
58 14 0.13
60 21 0.19
61 2 0.02
62 71 0.66
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTGAGATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTGTC
Found at i:14508593 original size:62 final size:62
Alignment explanation
Indices: 14508523--14508830 Score: 390
Period size: 62 Copynumber: 5.0 Consensus size: 62
14508513 TCCTTGAATT
* * * ** ** *
14508523 AAAAACTTATTTACGTAAGAATAGGATCTCTCTTGGTTCTTGGACGAACTTTTGGACTTGTC
1 AAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14508585 AAAAACTTATTTAAGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCTGAACTTGTC
1 AAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * *
14508645 AAAAAATTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTC
1 AAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* ** *
14508707 AAAAAGTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTAGTC
1 AAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14508769 AAAAACTTATTTACA-T-AGGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTC
1 AAAAACTTATTTA-AGTGA-GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14508831 GAACTTTTAC
Statistics
Matches: 220, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
60 53 0.24
61 4 0.02
62 162 0.74
63 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14509095 original size:218 final size:218
Alignment explanation
Indices: 14508713--14509147 Score: 638
Period size: 218 Copynumber: 2.0 Consensus size: 218
14508703 TGTCAAAAAG
* * *
14508713 TTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTAGTCAAAAACTTA
1 TTATTTAAGAGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACAACCGAACTAGTCAAAAACTTA
* * *
14508778 TTTACATAGGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCGAACTTTTACGA
66 TGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGA
* * * * * *
14508843 TTTTTTTTATAACTTCGGTACCTAAAAGTATTCAAGATGATCCATT-CTTTTGAGCAATTTTTCG
131 TTTCTTTTATAACTTCGGTACCAAAAACTATTCAAGATAATCCATTCCTTCT-AGAAATTTTTCG
*
14508907 AACATTGCATGCTCGGAAAATCCA
195 AACATTCCATGCTCGGAAAATCCA
* * ** * *
14508931 TTATTTATGAGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTA
1 TTATTTAAGAGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACAACCGAACTAGTCAAAAACTTA
* *
14508996 TGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGA
66 TGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGA
* *
14509061 TTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTGA
131 TTTCTTTTATAACTTCGGTACCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGA
*
14509126 ACATTCCATGCTTGGAAAATCC
196 ACATTCCATGCTCGGAAAATCC
14509148 CATCATTTGG
Statistics
Matches: 192, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
218 188 0.98
219 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (218 bp):
TTATTTAAGAGAGAATTGTGTCTCTCCTGGTTCTTGGACGAACAACCGAACTAGTCAAAAACTTA
TGTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAACTTTTACGA
TTTCTTTTATAACTTCGGTACCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGA
ACATTCCATGCTCGGAAAATCCA
Found at i:14509310 original size:215 final size:216
Alignment explanation
Indices: 14508987--14509482 Score: 617
Period size: 215 Copynumber: 2.3 Consensus size: 216
14508977 TGAACTTGTC
* * * *
14508987 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14509052 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCT-AG-
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTT-TGAGC
*** * * * * **
14509115 AAATTTTTTGAACATTCCATGCTTG-GAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTG
130 AAA-TTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
14509179 TAAACAAGTTTTGG-TCT-TTAAATT
193 TAAACAAGTTTTGGAT-TGTT-AATT
* * ** *
14509203 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGCATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
14509267 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTTGAGCA
*
14509332 AATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
14509397 ACAAGTTTTGGATTGTTAATT
196 ACAAGTTTTGGATTGTTAATT
* * *
14509418 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14509483 AACTTATTTA
Statistics
Matches: 237, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
214 1 0.00
215 173 0.73
216 63 0.27
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTTGAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGATTGTTAATT
Found at i:14509503 original size:62 final size:62
Alignment explanation
Indices: 14509421--14509668 Score: 356
Period size: 62 Copynumber: 4.0 Consensus size: 62
14509411 GTTAATTAAT
* * * **
14509421 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14509483 AACTTATTTACATGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14509545 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAA-TATCCGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
*
14509607 AACTTATTTA-AGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACA-TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14509669 CTTTTACTAT
Statistics
Matches: 167, Mismatches: 16, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
61 1 0.01
62 166 0.99
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14509915 original size:62 final size:62
Alignment explanation
Indices: 14509815--14510063 Score: 313
Period size: 62 Copynumber: 4.0 Consensus size: 62
14509805 TCCTTGAATT
* * * * * * * *
14509815 AAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTAGTC
* *
14509877 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACGTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTAGTC
* * *
14509939 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCACACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTAGTC
* * * * * *
14510001 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTAGTC
14510061 AAA
1 AAA
14510064 CTTTTACGAT
Statistics
Matches: 167, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
60 32 0.19
61 2 0.01
62 133 0.80
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTAGTC
Found at i:14510292 original size:62 final size:62
Alignment explanation
Indices: 14510215--14510341 Score: 200
Period size: 62 Copynumber: 2.0 Consensus size: 62
14510205 TCCTTGAATT
* * * * *
14510215 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
*
14510277 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
14510339 AAA
1 AAA
14510342 CTTTTACGAT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 59 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14510448 original size:278 final size:275
Alignment explanation
Indices: 14509939--14510556 Score: 936
Period size: 278 Copynumber: 2.2 Consensus size: 275
14509929 CAAACTAGTC
* * * *
14509939 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCACACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* *
14510004 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
* * * * *
14510069 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTGT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTGT
* * *
14510134 TTGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTGAAA-AA
196 TTGAACATTCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTC-ATTTGT-AAACAA
*
14510198 GTTTTGGTCCTTGAATT
259 GTTTTGGTCCTTAAATT
* * *
14510215 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
* *
14510280 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTT
14510345 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
* * **
14510410 -TTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTTTTTGTCATTTGTAAACA
194 GTTT-GAACATTCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTGTAAACA
*
14510474 AGTTTTGGTCTTTAAATT
258 AGTTTTGGTCCTTAAATT
14510492 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-TCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-AAACTTGTCAA
14510556 A
65 A
14510557 CTTTCACGAA
Statistics
Matches: 309, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
276 82 0.27
277 87 0.28
278 140 0.45
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTGT
TTGAACATTCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14510659 original size:215 final size:216
Alignment explanation
Indices: 14510277--14510750 Score: 634
Period size: 215 Copynumber: 2.2 Consensus size: 216
14510267 TGAACTTGTC
* * *
14510277 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * *
14510342 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * ** **
14510407 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTTTTTGTCA-TTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAATTTGAAATTTTGTAA
*
14510471 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* *
14510492 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* ** * * *
14510557 CTTTCACGAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTGC
66 CTTTCACGAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG-
*
14510621 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCGCATCATTTGGTCAAAATAATTTGAAATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCCCATCATTTGGTCAAAATAATTTGAAATTTTG
14510684 TAAACAAGTTTTGGACTGTTAATT
193 TAAACAAGTTTTGGACTGTTAATT
* *
14510708 AACAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
14510751 CCCAATATTT
Statistics
Matches: 227, Mismatches: 27, Indels: 9
0.86 0.10 0.03
Matches are distributed among these distances:
214 3 0.01
215 154 0.68
216 68 0.30
217 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
CTTTCACGAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCAAAATAATTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14510827 original size:62 final size:62
Alignment explanation
Indices: 14510711--14510834 Score: 185
Period size: 62 Copynumber: 2.0 Consensus size: 62
14510701 GTTAATTAAC
* * * **
14510711 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCCAATATTTGAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAA
* *
14510773 AACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTAGTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAA
14510835 CTTTTACTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (62 bp):
AACTTAGTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACCAACATCCGAACTTGTCAAA
Found at i:14510997 original size:273 final size:275
Alignment explanation
Indices: 14510492--14511107 Score: 807
Period size: 273 Copynumber: 2.2 Consensus size: 275
14510482 TCTTTAAATT
*
14510492 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* ** *
14510557 CTTTCACGAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCAC--A-TCATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTGAGCA
*
14510622 AATTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCAAAATAATTTGAAATTTTGTAA
128 AATTTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAATTTGAAATTTTGTAA
* * * * * *
14510687 ACAAGTTTTGGACTGTTAATTAACAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
193 ACAAGTTTTGGACTGTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGA
* *
14510752 CCAA-TATTTGAACTT-GTC
258 CCAACT-TTCGAA-TTGGTA
* * *
14510770 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14510835 CTTTTAC-T-ATTTATAACTTTGGTTCCAGAAAGTGTTCAAGATGATCCATT-CTTTCGAG-AAA
66 CTTTCACATCATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATTCCTTT-GAGCAAA
* * * ***
14510896 TTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTTGTAA
130 -TTTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCA-AAATAATTTGAAATTTTGTAA
* * *
14510960 ACAAGTTTTGGTCCT-TGAATTAAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGT
193 ACAAGTTTTGG-ACTGTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGG
*
14511024 ACGAACTTTCGAATTGGTA
257 ACCAACTTTCGAATTGGTA
*
14511043 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14511108 AACTTATTTA
Statistics
Matches: 297, Mismatches: 35, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
272 10 0.03
273 216 0.73
274 4 0.01
278 67 0.23
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
CTTTCACATCATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATTCCTTTGAGCAAAT
TTCCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAATTTGAAATTTTGTAAACA
AGTTTTGGACTGTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACCA
ACTTTCGAATTGGTA
Found at i:14511226 original size:60 final size:62
Alignment explanation
Indices: 14510981--14511229 Score: 297
Period size: 62 Copynumber: 4.0 Consensus size: 62
14510971 TCCTTGAATT
* * * * * * * *
14510981 AAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCGAA-TTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT-GTC
* *
14511043 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14511105 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * * *
14511167 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
14511227 AAA
1 AAA
14511230 CTTTTACGAT
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
60 31 0.19
61 2 0.01
62 130 0.79
63 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14511465 original size:399 final size:397
Alignment explanation
Indices: 14510711--14511506 Score: 1151
Period size: 399 Copynumber: 2.0 Consensus size: 397
14510701 GTTAATTAAC
* * ***
14510711 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCCAATATTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGCACAATATCCAAACTTGTCAAAAAC
* * *
14510776 TTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
66 TTATTTACGTAAGAATTGCTTCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
14510841 CTATTTATAACTTTGGTTCCAGAAAGTGTTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAAC
131 CTATTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCAAGAAATTTGTCGAAC
14510906 ATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG
196 ATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG
*
14510971 TCCTTGAATTAAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCGA
261 TCCTTGAATTAAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAACTTTCGA
* * *
14511036 ATTGGTAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACT
326 ATTGGTAAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACT
14511101 AGTCAAA
391 AGTCAAA
* * * *
14511108 AACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAG-ACGATCATCCAAACTTGTCAAAAA
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGCACAAT-ATCCAAACTTGTCAAAAA
*
14511172 CTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
65 CTTATTTACGTAAGAATTGCTTCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
* *
14511235 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATTCTTTCAAGCAATTTG
130 AC----T-ATTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCAAGAAATTTG
* * *
14511299 TCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCA
190 TCGAACATTCCATGCTCGA-GAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAA
* *
14511363 GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTT-GTTACTCTC-CTGGTTCTTGGACG
254 GTTTTGGTCCTTGAATTAAAAACATATTTACGTGAGAATTGGTT-CTCTCTC-GGTTCTTGGACG
*
14511426 AAC-TTCTGAACTT-GTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
317 AACTTTC-GAA-TTGGTAAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* *
14511489 ACATCCGAACTTGTCAAA
380 ACATCCAAACTAGTCAAA
14511507 CTTTTACGAT
Statistics
Matches: 357, Mismatches: 31, Indels: 20
0.88 0.08 0.05
Matches are distributed among these distances:
395 41 0.11
396 5 0.01
397 69 0.19
398 8 0.02
399 201 0.56
400 33 0.09
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (397 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGCACAATATCCAAACTTGTCAAAAAC
TTATTTACGTAAGAATTGCTTCTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTTA
CTATTTATAACTTCGGTTCCAGAAAGTATTCAAGATGATCCATTCTTTCAAGAAATTTGTCGAAC
ATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAGTTTTGG
TCCTTGAATTAAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAACTTTCGA
ATTGGTAAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACT
AGTCAAA
Found at i:14511479 original size:62 final size:62
Alignment explanation
Indices: 14511380--14511506 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
14511370 TCCTTGAATT
* * * * *
14511380 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14511442 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14511504 AAA
1 AAA
14511507 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14511660 original size:278 final size:275
Alignment explanation
Indices: 14511105--14511721 Score: 864
Period size: 277 Copynumber: 2.2 Consensus size: 275
14511095 CAAACTAGTC
* * * * * *
14511105 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14511170 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
* * * *
14511235 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCAAGCAATTTGT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCAAGAAATTTGT
* * *
14511300 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CTAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14511365 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * **
14511380 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14511445 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTT
*
14511510 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCAAGAAATT
* * * *
14511575 T-TTTGAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAAA
193 TGTCT-AACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
14511638 CAAGTTTTGGTCTTTAAATT
256 CAAGTTTTGGTCCTTAAATT
** * *
14511658 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTACTCTCC-TGGTTCTTGGACGAACATCCAAACTTGTCAA
14511721 A
65 A
14511722 CTTTCACGAG
Statistics
Matches: 302, Mismatches: 34, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
275 75 0.25
276 7 0.02
277 112 0.37
278 108 0.36
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACATCCGAACTTGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCAAGAAATTTGT
CTAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14511849 original size:215 final size:216
Alignment explanation
Indices: 14511442--14511937 Score: 633
Period size: 215 Copynumber: 2.3 Consensus size: 216
14511432 TGAACTTGTC
* * * * *
14511442 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* * * *
14511507 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
*** * * * * **
14511572 ATTTTTTGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
* *
14511637 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTAGACTGTT-AATT
* * *
14511658 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
* ** * * *
14511722 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGTGC
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-AG-
14511786 AAA-TTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
129 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGAAATTTTG
14511849 TAAACAAGTTTTAGACTGTTAATT
193 TAAACAAGTTTTAGACTGTTAATT
* * *
14511873 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
14511938 AACTTATTTA
Statistics
Matches: 240, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
214 3 0.01
215 174 0.73
216 63 0.26
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTAGACTGTTAATT
Found at i:14511973 original size:62 final size:62
Alignment explanation
Indices: 14511876--14512125 Score: 335
Period size: 62 Copynumber: 4.0 Consensus size: 62
14511866 GTTAATTAAT
* * * * *
14511876 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14511938 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCGAAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCG-AACTTGTCAAA
* *
14512000 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATATCCGAACTTGTCAAA
1 AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-T-T-CGAACTTGTCAAA
* *
14512064 AACTTATTTA-AGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACA-TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14512126 CTTTTACTAT
Statistics
Matches: 170, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
61 3 0.02
62 109 0.64
63 1 0.01
64 55 0.32
65 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (62 bp):
AACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
Found at i:14511977 original size:892 final size:888
Alignment explanation
Indices: 14510770--14512391 Score: 2333
Period size: 892 Copynumber: 1.8 Consensus size: 888
14510760 TGAACTTGTC
* *
14510770 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
* * * *
14510835 CTTTTACTATTTATAACTTTGGTTCCAGAAAGTGTTCAAGATGATCCATTCTTTCGAGAAATTTT
66 CTTTCACTATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATTCTTTCGAGAAATTTT
* * * ***
14510900 TCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAAG
131 CCAAACATTCCATGCTCGAGAAATCACATAATTTGGTATAAATAGTTTGAAATTTTGTAAACAAG
* * * *
14510965 TTTTGGTCCTTGAATTAAAAACATATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAAC
196 TTTTAGTACTTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAAC
*
14511030 TTTCGAATTGGTAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
261 TTTCGAATTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
14511095 CAAACTAGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGA-CGAT-CATCC
326 CAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACCAATACATCC
* *
14511158 AAACTTGTCAAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAA
391 AAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTAGTTCTGGGACGAACATCCGAA
* *
14511221 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATTC
456 CTTGTCAAACTTTTAC----T-ATTTATAACTTCGATTCCAGAAAGTATTCAAGATGATCCATTC
* * *
14511285 TTTCAAGCAAT-TTGTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTG
516 TTTCAAGCAATCTT-TCGAACATTCCATGCTCGA-GAAATCGAATAATTTGGTATAAATAGTTTG
* *
14511348 TCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTT-GTTACTCTC
579 TCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTT-CT-TC
* * *
14511412 CT-GGTTCTTGGACGAAC-TTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCT
642 CTCGGTTCTTGGACGAACTTTC-GAACTGGTAAAAAACTTATGTACATAAGAATTGTTTCTCTCT
*
14511475 TGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
706 TGGTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
14511540 AAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTTGGAAAATCCCA
771 AAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTTGGAAAATCCCA
14511605 TCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
836 TCATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
* * *
14511658 AAAAACTTATTTACGTGAGAATTG-TATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGCT-TCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAA
* ** *
14511721 ACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTG
65 ACTTTCAC----T-ATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATT-CTTTCGAG
*
14511785 CAAA-TTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGAAATTTT
124 -AAATTTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGGT-ATAAATAGTTTGAAATTTT
* * * * *
14511848 GTAAACAAGTTTTAG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTC
187 GTAAACAAGTTTTAGTACT-TGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTC
* * *
14511912 TTGGATGAACTTTTGAACTT-GTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
251 TTGGACGAACTTTCGAA-TTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTT
* * * *
14511976 GGATGAACTTCGAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
315 GGACGAACTTCCAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGA
* * * *
14512041 CCAATATATCCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGAC
380 CCAATACATCCAAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTAGTTCTGGGAC
*
14512106 GAACATCCGAACTTGTCAAACTTTTACTATTTATAACTTCGATTCCTGAAAGTATTCAAGATGAT
445 GAACATCCGAACTTGTCAAACTTTTACTATTTATAACTTCGATTCCAGAAAGTATTCAAGATGAT
* *
14512171 CCATTCTTTCGAGCAATCTTTCGAACATTCCATGCTCGAGAAATTGAATAATTTGGTATAAATAG
510 CCATTCTTTCAAGCAATCTTTCGAACATTCCATGCTCGAGAAATCGAATAATTTGGTATAAATAG
14512236 TTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCT
575 TTTGTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCT
* * * * *
14512301 TTCTCGTTTCTTGTACGAACTTTCGAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTC
640 TCCTCGGTTCTTGGACGAACTTTCGAACTGGTAAAAAACTTATGTACATAAGAATTGTTTCTCTC
*
14512366 TTGGTTCTTGGACGAACTTCCAAACT
705 TTGGTTCTTGGACGAACATCCAAACT
14512392 AGTCCAAAAC
Statistics
Matches: 646, Mismatches: 67, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
887 36 0.06
888 28 0.04
891 37 0.06
892 445 0.69
893 22 0.03
894 35 0.05
895 2 0.00
896 41 0.06
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (888 bp):
AAAAACTTATTTACGTGAGAATTGCTTCTCTCTTGGTTCTTGGACAAACATCCAAACTTGTCAAA
CTTTCACTATTTATAACTTTGGTTCCAGAAAGTATTCAAGACGATACATTCTTTCGAGAAATTTT
CCAAACATTCCATGCTCGAGAAATCACATAATTTGGTATAAATAGTTTGAAATTTTGTAAACAAG
TTTTAGTACTTGAATTAAAAACATAGTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAAC
TTTCGAATTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC
CAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTAGACCAATACATCC
AAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTAGTTCTGGGACGAACATCCGAA
CTTGTCAAACTTTTACTATTTATAACTTCGATTCCAGAAAGTATTCAAGATGATCCATTCTTTCA
AGCAATCTTTCGAACATTCCATGCTCGAGAAATCGAATAATTTGGTATAAATAGTTTGTCTTTTT
GTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTTCCTCGGTTCT
TGGACGAACTTTCGAACTGGTAAAAAACTTATGTACATAAGAATTGTTTCTCTCTTGGTTCTTGG
ACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCA
AGATAATCCATTCCTTCTAGAAATTTTTTGAACATTCCATGCTTGGAAAATCCCATCATTTGGTC
TAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:14512099 original size:126 final size:124
Alignment explanation
Indices: 14511876--14512125 Score: 362
Period size: 126 Copynumber: 2.0 Consensus size: 124
14511866 GTTAATTAAT
* ** *
14511876 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTCGAACTTGTCAAAAAC
* * *
14511941 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAAC-TTCGAAACTTGTCAAA
66 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG-AACTTGTCAAA
*
14512000 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATATCCGAACTTGTCAAA
1 AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACT-T-T-CGAACTTGTCAAA
14512064 AACTTATTTA-AGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
63 AACTTATTTACA-TAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14512126 CTTTTACTAT
Statistics
Matches: 113, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
123 1 0.01
124 42 0.37
125 2 0.02
126 65 0.58
127 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (124 bp):
AACTTAGTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAACTTTCGAACTTGTCAAAAAC
TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14512355 original size:399 final size:398
Alignment explanation
Indices: 14511658--14512797 Score: 1455
Period size: 399 Copynumber: 2.9 Consensus size: 398
14511648 TCTTTAAATT
* * * * * *
14511658 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
* * * * * *
14511722 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTGC
66 CTTTTAC--G-TCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC
* * * ***
14511786 AAATTTCCAAACATTCCATGCTCGAGAAA-TCACATCATTTGGTCA-AAATAGTTTGAAATTTTG
127 -AATTTTCAAACATTCCATGCTCGAGAAATTGA-ATAATTTGGT-ATAAATAGTTTGTCTTTTTG
* * * * * * *
14511849 TAAACAAGTTTTAG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
189 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCT
* *
14511913 TGGATGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
253 TGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14511978 ATGAACTTCGAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACC
318 ACGAACTTCGAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-C
* *
14512043 AATATATCCGAACTTGTC
382 AA-ACATCCAAACTTGTC
* *
14512061 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
* *
14512126 CTTTTAC-T-ATTTATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATC
66 CTTTTACGTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT-
*
14512189 TTTCGAACATTCCATGCTCGAGAAATTGAATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
130 TTTCAAACATTCCATGCTCGAGAAATTGAATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACA
* * *
14512254 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTTTCTCGTTTCTTGTACGA
195 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGA
* *
14512319 ACTTTCGAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
260 ACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
14512384 TCCAAACTAGTCCAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCC
325 TCGAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCC
14512449 AAACTTGTC
390 AAACTTGTC
* *
14512458 AAAAACTTATTTACGTAAGAATTG-TT-TCTATTAGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
* *
14512521 CTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCA
66 CTTTTACG---TCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * *
14512585 ATTTTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
128 A-TTTTCAAACATTCCATGCTCGA-GAAATTGAATAATTTGGTATAAATAGTTTGTCTTTTTGTA
* *
14512649 AACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTT-GTGTCTCTC-CTGGTTCTT
191 AACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTC-GGTTCTT
* * *
14512712 GGACGAAC-TTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
254 GGACGAACTTTC-GAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14512776 ACGAACATCCG-AACTTGTCAAA
318 ACGAAC-TTCGAAACTTGTCAAA
14512798 CTTTTACGAT
Statistics
Matches: 648, Mismatches: 72, Indels: 38
0.85 0.09 0.05
Matches are distributed among these distances:
395 41 0.06
396 2 0.00
397 36 0.06
398 17 0.03
399 451 0.70
400 39 0.06
403 27 0.04
404 35 0.05
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (398 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
CTTTTACGTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
TTCAAACATTCCATGCTCGAGAAATTGAATAATTTGGTATAAATAGTTTGTCTTTTTGTAAACAA
GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGACGAA
CTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CGAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCA
AACTTGTC
Found at i:14512519 original size:60 final size:62
Alignment explanation
Indices: 14512272--14512520 Score: 297
Period size: 62 Copynumber: 4.0 Consensus size: 62
14512262 TCCTTGAATT
* * * * * * * * *
14512272 AAAAACTTATTTACGTGAGAATTGGTTCTTTC-TCGTTTCTTGTACGAACTTTCGAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAG-TTCTTGGACGAACATCCAAACTTGTC
* * * *
14512334 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* *
14512396 CAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14512458 AAAAACTTATTTACGTAAGAATTG-TT-TCTATTAGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
14512518 AAA
1 AAA
14512521 CTTTTACGAT
Statistics
Matches: 166, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
60 33 0.20
61 2 0.01
62 129 0.78
63 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14512748 original size:62 final size:62
Alignment explanation
Indices: 14512671--14512797 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
14512661 TCCTTGAATT
* * * * *
14512671 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14512733 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14512795 AAA
1 AAA
14512798 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Done.