Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 69 of 144
Found at i:14512903 original size:277 final size:275
Alignment explanation
Indices: 14512397--14513011 Score: 941
Period size: 277 Copynumber: 2.2 Consensus size: 275
14512387 AAACTAGTCC
* * * *
14512397 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAA
* *
14512462 ACTTATTTACGTAAGAATTGTTTCTATTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTA
66 ACTTATGTACGTAAGAATTGTTTCTATTAGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
* * * *
14512527 CGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTC
131 CGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTTC
* * * *
14512592 TAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTT
196 GAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
14512657 TTGGTCCTTGAATTA
261 TTGGTCCTTAAATTA
* * * *
14512672 AAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAA
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAA
* *
14512737 ACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
66 ACTTATGTACGTAAGAATTG-TT-TCTATTAGTTCTTGGACGAACATCCGAACTTGTCAAACTTT
14512802 TACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATTT
129 TACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATTT
* *
14512867 TTCGAACATTCCATGCT-TGGAAAATCCCAT-ATTTGGTCTAAATTGTTTGTCATTTTGTAAACA
193 TTCGAACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
14512930 AGTTTTGGTCTTTAAATTA
257 AGTTTTGGTCCTTAAATTA
14512949 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTT-TCAAACTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCT-AAACTTGTCAAA
14513012 CTTTCACGAA
Statistics
Matches: 308, Mismatches: 27, Indels: 9
0.90 0.08 0.03
Matches are distributed among these distances:
275 78 0.25
276 32 0.10
277 155 0.50
278 43 0.14
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCTAAACTTGTCAAAA
ACTTATGTACGTAAGAATTGTTTCTATTAGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTTC
GAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTCCTTAAATTA
Found at i:14513383 original size:61 final size:62
Alignment explanation
Indices: 14513166--14513412 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
14513156 GTTAATTAAT
* * * * **
14513166 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14513228 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14513290 AACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACCAA-TATCCGAACTTGTC-AA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
* *
14513351 AACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14513413 CTTTTACTAT
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
61 57 0.34
62 111 0.66
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14513406 original size:123 final size:124
Alignment explanation
Indices: 14513166--14513412 Score: 363
Period size: 123 Copynumber: 2.0 Consensus size: 124
14513156 GTTAATTAAT
* * ** **
14513166 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAATGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGAACCAACTTCCGAACTTGTCAAAAAC
* * *
14513231 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 TTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14513290 AACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACCAA-TATCCGAACTTGTC-AAAA
1 AACTTAGTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGAACCAACT-TCCGAACTTGTCAAAAA
*
14513353 CTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
65 CTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14513413 CTTTTACTAT
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
123 61 0.55
124 49 0.45
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTAGTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGAACCAACTTCCGAACTTGTCAAAAAC
TTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14513575 original size:396 final size:398
Alignment explanation
Indices: 14512948--14514084 Score: 1481
Period size: 396 Copynumber: 2.9 Consensus size: 398
14512938 TCTTTAAATT
* * * * *
14512948 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * * *
14513012 CTTTCACGAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTGC
66 CTTTTAC--A-TCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC
* * * * **
14513076 AAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGA-AATTTTG
127 AATTTTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTT-ATCTTTTTG
* * *
14513139 TAAACAAGATTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
190 TAAACAAGTTTTGGTCCT-TTAATTAA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT
*
14513203 TGAATGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
253 TGAACGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14513268 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTGGACC
318 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTAGA-C
*
14513333 AAT-ATCCGAACTTGTC
382 AATCATCCAAACTTGTC
*
14513349 -AAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14513413 CTTTTAC-T-ATTTATAACTTCGGTTCCTGAAAGTGTTCAAGATGATCCATTCTTTCGAGCAATT
66 CTTTTACATCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
*
14513476 TTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATCTTTTTGTAAACA
131 TTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATCTTTTTGTAAACA
* * * *
14513541 AGTTTTGGTCCTTTTATTAAAACCTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGA
196 AGTTTTGGTCCTTTAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGA
** * * *
14513606 ACTTTCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
260 ACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
14513671 TCCAAACTAGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCC
325 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTAGACAATCATCC
14513736 AAACTTGTC
390 AAACTTGTC
* * *
14513745 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14513808 CTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCA
66 CTTTTAC-A--TCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * *
14513872 ATTTTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
128 ATTTTTCAAACATTCCATGCTCGA-GAAATCGCATAATTTGGTATAAATAGTTTATCTTTTTGTA
* * * * * *
14513936 AACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGG
192 AACAAGTTTTGGTCCTTTAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA
* * * *
14514001 ACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAATAATTGTTTCTCTCTTGGTTCTTGGACG
256 ACGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
** *
14514066 AACAACCGAACTTGTCAAA
321 AACTTCCAAACTTGTCAAA
14514085 CTTTTACGAT
Statistics
Matches: 646, Mismatches: 75, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
395 52 0.08
396 272 0.42
397 25 0.04
398 1 0.00
399 198 0.31
400 61 0.09
401 37 0.06
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (398 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACATCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATT
TTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTATCTTTTTGTAAACA
AGTTTTGGTCCTTTAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAA
CTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CCAAACTTGTCAAAAACTTATTTACGTAAGAATAGTTTCTCTCTTGGTTCTTAGACAATCATCCA
AACTTGTC
Found at i:14513804 original size:60 final size:62
Alignment explanation
Indices: 14513559--14513807 Score: 295
Period size: 62 Copynumber: 4.0 Consensus size: 62
14513549 TCCTTTTATT
* * ** * * * * *
14513559 AAAACCTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14513621 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14513683 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14513745 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
14513805 AAA
1 AAA
14513808 CTTTTACGAT
Statistics
Matches: 164, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
60 31 0.19
61 2 0.01
62 131 0.80
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14514057 original size:62 final size:62
Alignment explanation
Indices: 14513958--14514084 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 62
14513948 TCCTTGAATT
* * * ** *
14513958 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACAACCGAACTTGTC
* * *
14514020 AAAAACTTATGTACGTAATAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACAACCGAACTTGTC
14514082 AAA
1 AAA
14514085 CTTTTACGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACAACCGAACTTGTC
Found at i:14514296 original size:278 final size:273
Alignment explanation
Indices: 14513683--14514300 Score: 844
Period size: 277 Copynumber: 2.2 Consensus size: 273
14513673 CAAACTAGTC
* * * * * *
14513683 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAAC-TTCAAACTTGTCAAA
* * *
14513748 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTT
64 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACAACCGAACTTGTCAAACTTTT
* * * * *
14513813 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
129 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTA
** * * *
14513878 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
194 AAAACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14513943 TTTGGTCCTTGAATT
259 TTTGGTCCTTAAATT
* *
14513958 AAAAACTTATTTACGTGAGAGTTGTTACTCTCC-TGGTTCTTGGACGAACTTCTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTG-TA-TCTCCTTGGTTCTTGGACGAACTTC-AAACTTGTCAA
* * *
14514022 AAACTTATGTACGTAATAATTGTTTCTCTCTTGGTTCTTGGACGAACAACCGAACTTGTCAAACT
63 AAACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGACGAACAACCGAACTTGTCAAACT
14514087 TTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAAT
126 TTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAAT
* * *
14514152 TTTAAAAACATTCCATGCT-TGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCAATTTTGTAA
190 TTTAAAAACATTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTC-ATTTTGTAA
*
14514216 ACAAGTTTTGGTCTTTAAATT
253 ACAAGTTTTGGTCCTTAAATT
**
14514237 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAC-TTCAAACTTGTCAAA
14514301 CTTTCACGTG
Statistics
Matches: 300, Mismatches: 33, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
274 2 0.01
275 65 0.22
276 4 0.01
277 89 0.30
278 88 0.29
279 52 0.17
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.39
Consensus pattern (273 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTCAAACTTGTCAAAAA
CTTATGTACGTAAGAATTGTTTCTCTTAGTTCTGGGACGAACAACCGAACTTGTCAAACTTTTAC
GATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTAAA
AACATTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
TGGTCCTTAAATT
Found at i:14514580 original size:62 final size:62
Alignment explanation
Indices: 14514455--14514702 Score: 363
Period size: 62 Copynumber: 4.0 Consensus size: 62
14514445 GTTAATTAAT
* * * **
14514455 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGACGAACTTTTGAACTTGTCAAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC-AAA
* *
14514517 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
14514579 AACTTATTTACATAAGAATTGTTTCTGTCTTGGTTCCTGGACCAATATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
14514641 AACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14514703 CTTTTACTAT
Statistics
Matches: 167, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
62 142 0.85
63 25 0.15
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14515094 original size:60 final size:62
Alignment explanation
Indices: 14514849--14515097 Score: 306
Period size: 62 Copynumber: 4.0 Consensus size: 62
14514839 TCCTTAAATT
* * * * * * *
14514849 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCGAA-TTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT-GTC
* *
14514911 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * *
14514973 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGATCATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
* * * * *
14515035 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
14515095 AAA
1 AAA
14515098 CTTTTACGAT
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
60 31 0.19
61 2 0.01
62 131 0.79
63 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14515346 original size:62 final size:62
Alignment explanation
Indices: 14515247--14515373 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
14515237 TCCTTGAATT
* * * * *
14515247 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14515309 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14515371 AAA
1 AAA
14515374 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14515356 original size:398 final size:393
Alignment explanation
Indices: 14514237--14515373 Score: 1518
Period size: 397 Copynumber: 2.8 Consensus size: 393
14514227 TCTTTAAATT
* * * * * *
14514237 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGATAAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTGGTTCTTGGATGAACATCCGAACTTGTCAAAC
* * * * * *
14514302 TTTCACGTGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTGCA
65 TTTTACGT-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGA-TATCCATT-CTTTCGAGC-
* * * * **
14514366 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
126 AATTTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTG-TCTTTTGTAA
* * * *
14514431 ACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTGGTTCTTGGA
190 ACAAGTTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTG-TTCTCTCTGGTTCTTGGA
14514495 CGAACTTTTGAACTTGTCAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
253 CGAAC-TTTGAACTTGTC-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
14514560 AACATCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTGTCTTGGTTCCTGGACCAAT
316 AACATCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCCTAGACCAAT
*
14514625 ATCCGAACTTGTC
381 ATCCAAACTTGTC
* *
14514638 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
*
14514703 CTTTTAC---T-ATTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
64 CTTTTACGTTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAT-ATCCATTCTTTCGAGCAA
* *
14514764 TCTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAA
128 T-TTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAA
*
14514829 CAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTAC
191 CAAGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATT-GTTCTCTCT-GGTTCTTGGAC
*
14514894 GAACTTTCGAA-TTGGTAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
254 GAACTTT-GAACTT-GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * ** * * * *
14514958 ACTTCCAAACTAGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGA-CGATC
317 ACATCCAAACTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCCTAGACCAAT-
14515022 ATCCAAACTTGTC
381 ATCCAAACTTGTC
* *
14515035 AAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACT
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
* *
14515100 TTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCAAGCAATT
66 TTTACG-TTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCGAGCAATT
* *
14515165 TGTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACC
130 T-TCAAACATTCCATGCTCGA-GAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACA
* *
14515229 AGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGA
193 AGTTTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTT-CTCT-CTGGTTCTTGGACGA
* *
14515294 ACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
256 ACTT-TGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA
*
14515359 TCCGAACTTGTCAAA
320 TCCAAACTTGTCAAA
14515374 CTTTTACGAT
Statistics
Matches: 654, Mismatches: 59, Indels: 49
0.86 0.08 0.06
Matches are distributed among these distances:
395 41 0.06
396 12 0.02
397 277 0.42
398 160 0.24
399 71 0.11
400 32 0.05
401 22 0.03
402 36 0.06
403 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (393 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAACT
TTTACGTTTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCGAGCAATTT
TCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGT
TTTGGTCCTTAAATTAAAAACTTATTTACGTGAGAATTGTTCTCTCTGGTTCTTGGACGAACTTT
GAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAA
CTTGTCAAAAACTTATTTACATAAGAATTGTTTCTCTCTTGGTTCCTAGACCAATATCCAAACTT
GTC
Found at i:14515984 original size:60 final size:62
Alignment explanation
Indices: 14515742--14515987 Score: 343
Period size: 62 Copynumber: 4.0 Consensus size: 62
14515732 GTTAATTAAT
* * * ***
14515742 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14515804 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14515866 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
14515928 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14515988 CTTTTACGAT
Statistics
Matches: 168, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
60 32 0.19
61 2 0.01
62 134 0.80
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14516237 original size:62 final size:62
Alignment explanation
Indices: 14516138--14516264 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
14516128 TCCTTGAATT
* * * * *
14516138 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* *
14516200 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14516262 AAA
1 AAA
14516265 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14516614 original size:215 final size:216
Alignment explanation
Indices: 14516200--14516695 Score: 651
Period size: 215 Copynumber: 2.3 Consensus size: 216
14516190 TGAACTTGTC
* * * *
14516200 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14516265 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAAAA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAAAA
* * * * * **
14516330 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTATTTGTCATTTTGCAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAAATATTTGAAATTTTGCAA
14516395 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGTCTGTT-AATT
* *
14516416 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * * **
14516480 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCA
66 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCC-TTCTAAA
*
14516545 AA-TTTCCAAACTTTCCATGCTC-GAGAAATCACATCATTTGGTC-AAAATAGTTTGAAATTTTG
130 AATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCTAAAATA-TTTGAAATTTTG
*
14516607 TAAACAAGTTTTGGTCTGTTAATT
193 CAAACAAGTTTTGGTCTGTTAATT
* * *
14516631 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14516696 AACTTATTTA
Statistics
Matches: 243, Mismatches: 32, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
214 7 0.03
215 169 0.70
216 67 0.28
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAAAA
ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAAATATTTGAAATTTTGCAA
ACAAGTTTTGGTCTGTTAATT
Found at i:14516663 original size:892 final size:891
Alignment explanation
Indices: 14514638--14517154 Score: 4109
Period size: 890 Copynumber: 2.8 Consensus size: 891
14514628 CGAACTTGTC
* * * * * *
14514638 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * * * *
14514703 CTTTTAC----T-ATTTATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC
65 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTT-GTGC
* * * * * ***
14514762 -AATCTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTTG
129 AAAT-TTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGAAATTTTG
* * * * *
14514825 TAAACAAGTTTTGGTCCT-TAAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCT
192 TAAACAAGTTTTGGT-CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* * *
14514889 TGTACGAACTTTCGAA-TTGGTAAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
256 TGAACGAACTTTTGAACTT-GTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
14514953 GACGAACTTCCAAACTAGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTTGTTCTTAGAC
320 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGAC
*
14515018 GATCATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACA
385 GAACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACA
14515083 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATC
450 TCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATC
*
14515148 CATTCTTTCAAGCAATTTGTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGT
515 CATTCTTTCAAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGT
14515213 TTGTC-TTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTC
580 TTGTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTC
14515277 TCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCT
645 TCCTGGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCT
14515342 TGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
710 TGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
*
14515407 AAACTATTCAAGATAATCCATTCCTTCTAGAAATTTTAAAACATTCCATGCTTGGAAAATCCCAT
775 AAACTATTCAAGATAATCCATTCCTTCTAAAAATTTTAAAACATTCCATGCTTGGAAAATCCCAT
* *
14515472 CATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
840 CATTTGGTCTAAATTATTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATT
14515524 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
14515589 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
66 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
*
14515654 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAA
131 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAAA
*
14515719 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
196 CAAGTTTTGGTCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
*
14515784 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
261 GAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
14515849 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
14515914 CCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAA
391 CCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAA
14515979 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCT
456 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCT
*
14516044 TTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT
521 TTCAAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT
14516109 TTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGG
586 TTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGG
14516174 TTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTC
651 TTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTC
14516239 TTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTA
716 TTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTA
**
14516304 TTCAAGATAATCCATTCCTTCTAAAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTT
781 TTCAAGATAATCCATTCCTTCTAAAAA-TTTTAAAACATTCCATGCTTGGAAAATCCCATCATTT
14516369 GGTCTAAATTATTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATT
845 GGTCTAAATTATTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATT
14516416 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
14516481 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
66 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
14516546 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAAA
131 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAAA
*
14516611 CAAGTTTTGGTCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGTCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
*
14516676 GAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAA
261 GAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
14516741 CTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAATAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
* * * * *
14516806 CCGAACTTGTCAAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCG
391 CCAAACTTGTCAAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCG
* **
14516871 AACTTGTCAAACTTTTAC----T-ATTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCAT
454 AACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGAT-ATCCAT
* * * *
14516931 TCTTTCGAGCAATCTTTCGAACATTCCATGCTC-GAGAAATCGCATAATTTGGTATAAATAGTTT
518 TCTTTCAAGCAATTTTTCTAACATTCCATGCTCAG-GAAATCGCATAATTTGGTCTAAATAGTTT
* *
14516995 GTCTTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTT-CTCT
582 GTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTT-GTTACTCT
* ** * * * * *
14517059 -CTCGGTTCTTGTACGAACTTCCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCT
646 CCT-GGTTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCT
* * *
14517123 TGGTTCTTGGACGAACTTCCAAACTAGTCAAA
710 TGGTTCTTGGACGAACATCCGAACTTGTCAAA
14517155 AACTTATTTA
Statistics
Matches: 1535, Mismatches: 78, Indels: 32
0.93 0.05 0.02
Matches are distributed among these distances:
885 37 0.02
886 27 0.02
889 37 0.02
890 665 0.43
891 234 0.15
892 492 0.32
893 2 0.00
894 41 0.03
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (891 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGTGCAA
ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAAA
CAAGTTTTGGTCTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
GAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACAT
CCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAA
CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCT
TTCAAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCT
TTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGG
TTCTTGGACGAACTTCTGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTC
TTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTA
TTCAAGATAATCCATTCCTTCTAAAAATTTTAAAACATTCCATGCTTGGAAAATCCCATCATTTG
GTCTAAATTATTTGTCATTTTGCAAACAAGTTTTGGTCTTTAAATT
Found at i:14516731 original size:62 final size:62
Alignment explanation
Indices: 14516634--14516881 Score: 372
Period size: 62 Copynumber: 4.0 Consensus size: 62
14516624 GTTAATTAAT
* * **
14516634 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * *
14516696 AACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14516758 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAA-TATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
* * *
14516820 AACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14516882 CTTTTACTAT
Statistics
Matches: 169, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 168 0.99
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14517227 original size:61 final size:62
Alignment explanation
Indices: 14517028--14517275 Score: 349
Period size: 62 Copynumber: 4.0 Consensus size: 62
14517018 TCCTTGAATT
* * * * *
14517028 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTCCAAACTGGTA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* * *
14517090 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* *
14517152 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-GACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
* * * *
14517213 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACATCCGAACTGGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
14517273 AAA
1 AAA
14517276 CTTTTACGAT
Statistics
Matches: 170, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
59 12 0.07
60 22 0.13
61 41 0.24
62 95 0.56
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTGGTC
Found at i:14517466 original size:398 final size:398
Alignment explanation
Indices: 14516416--14517531 Score: 1532
Period size: 397 Copynumber: 2.8 Consensus size: 398
14516406 TCTTTAAATT
* * * * * *
14516416 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTAAGAATTGTTTCT-CTTAGTTCTTGGACGAACATCCGAACTTGTCAAAC
* * * * * *
14516481 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTTTGT-GCA
65 TTTTACGA-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGA-TATCCATT-CTTTCTAGCA
* * * * * * ***
14516545 AATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
127 ATTTTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * * * *
14516610 ACAAGTTTTGGT-CTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
192 ACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGG
* *
14516674 ACGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCGGTTCTTGGACG
256 ACGAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
14516739 AACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAAT
321 AACTTCCAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAAC
*
14516804 ATCCGAACTTGTC
386 ATCCAAACTTGTC
* *
14516817 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAA
* * *
14516882 CTTTTAC---T-ATTTATAACTTCGGTTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAA
64 CTTTTACGATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGAT-ATCCATTCTTTCTAGCAA
* * *
14516943 TCTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTTTGTAAA
128 TTTTTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
*
14517008 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTG-GT-TCTCTCTCGGTTCTTGT
193 CAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTC-CT-GGTTCTTGG
** * * *
14517071 ACGAACTTCCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
256 ACGAACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * *
14517136 AACTTCCAAACTAGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTT-CTTGACGAAC
321 AACTTCCAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAAC
14517200 ATCCAAACTTGTC
386 ATCCAAACTTGTC
* *
14517213 AAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACT
1 AAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACT
*
14517278 TTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATT
66 TTTACGA-TTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCTAGCAATT
*
14517343 TTTCTAACATTCCATGCTC-AGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
130 TTTCAAACATTCCATGCTCGA-GAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAC
* *
14517407 CAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACG
194 AAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGGACG
* * *
14517472 AACTTCTGAATTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA
259 AACTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
14517532 AAACATCCGA
Statistics
Matches: 630, Mismatches: 70, Indels: 33
0.86 0.10 0.05
Matches are distributed among these distances:
394 41 0.07
395 6 0.01
396 48 0.08
397 248 0.39
398 186 0.30
399 35 0.06
400 4 0.01
401 22 0.03
402 37 0.06
403 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (398 bp):
AAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGACGAACATCCGAACTTGTCAAACT
TTTACGATTCTTTTATAACTTCGGTTCCTGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTT
TTCAAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAA
GTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTGTCTCTCCTGGTTCTTGGACGAA
CTTCTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
CCAAACTAGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCCTGGACCAACATCCA
AACTTGTC
Found at i:14517680 original size:277 final size:275
Alignment explanation
Indices: 14517152--14517766 Score: 916
Period size: 277 Copynumber: 2.2 Consensus size: 275
14517142 CAAACTAGTC
* * *
14517152 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-GACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14517216 AACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACTTTT
66 AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTTGGATAAACATCCGAACTGGTCAAACTTTT
* * * *
14517281 ACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTT
131 ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
* * *
14517346 CTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGT
196 CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14517411 TTTGGTCCTTGAATT
261 TTTGGTCCTTAAATT
* * * ** *
14517426 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAATTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14517491 AACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-AAACATCCGAACTTGTCAAACTT
66 AACTTATGTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATAAACATCCGAACTGGTCAAACTT
14517555 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAAATT
129 TTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGAT-ATCCATTCCTTCTAGAAATT
* * *
14517620 TTTCGAACATTCCATGCT-TGGAAAATC-CTATCATTTGGTCTAAATTGTTTGTCATTTTGTAAA
193 TTTCGAACATTCCATGCTCAGG-AAATCGC-ATAATTTGGTCTAAATAGTTTGTCATTTTGTAAA
*
14517683 CAAGTTTTGGTCTTTAAATT
256 CAAGTTTTGGTCCTTAAATT
*
14517703 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14517767 CTTTCACAAA
Statistics
Matches: 304, Mismatches: 31, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
274 37 0.12
275 39 0.13
276 97 0.32
277 131 0.43
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (275 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATGTACGTAAGAATTGTTTCTCTTAGTTCTTGGATAAACATCCGAACTGGTCAAACTTTT
ACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATATCCATTCCTTCTAGAAATTTTT
CGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTAAATT
Found at i:14517870 original size:215 final size:216
Alignment explanation
Indices: 14517488--14517982 Score: 610
Period size: 215 Copynumber: 2.3 Consensus size: 216
14517478 TGAATTTGTC
* * * * *
14517488 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-AAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14517552 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACAAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCTAGAA
* * * * * **
14517617 ATTTTTCGAACATTCCATGCTTGGAAAATCCTATCATTTGGTCTAAATTGTTTGTCATTTTGTAA
131 ATTTTCCAAACATTCCATGCTCGGAAAATCCTATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
*
14517682 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* *
14517703 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
14517767 CTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTT-TGTGC
66 CTTTCACAAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCT-AG-
14517831 AAA-TTTCCAAACATAT-CATGCTC-GAGAAATCAC-ATCATTTGGTCAAAATAGTTTGAAATTT
129 AAATTTTCCAAACAT-TCCATGCTCGGA-AAATC-CTATCATTTGGTCAAAATAGTTTGAAATTT
*
14517892 TTTAAACAAGTTTTGGACTGTTAATT
191 TGTAAACAAGTTTTGGACTGTTAATT
* * * *
14517918 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14517983 AACTTATTTA
Statistics
Matches: 240, Mismatches: 32, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
214 16 0.07
215 186 0.77
216 38 0.16
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.40
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACAAATTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTCGGAAAATCCTATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14518018 original size:62 final size:62
Alignment explanation
Indices: 14517921--14518134 Score: 331
Period size: 62 Copynumber: 3.5 Consensus size: 62
14517911 GTTAATTAAT
* ***
14517921 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
*
14517983 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
* * *
14518045 AACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTT-AGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGA-ACGAACTTCCAAACTTGTCAAA
*
14518107 AACTTATTTACGTAAGAATTGTTTCTCT
1 AACTTATTTACGTGAGAATTGTTTCTCT
14518135 TAGTTCTGGG
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
62 141 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAA
Found at i:14518394 original size:62 final size:62
Alignment explanation
Indices: 14518317--14518443 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
14518307 TCCTTGAATT
* * * *
14518317 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCAGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCAGAACTTGTC
* * *
14518379 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCAGAACTTGTC
14518441 AAA
1 AAA
14518444 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCCTGGTTCTTGGACGAACATCAGAACTTGTC
Found at i:14518412 original size:891 final size:888
Alignment explanation
Indices: 14516817--14518997 Score: 3704
Period size: 891 Copynumber: 2.5 Consensus size: 888
14516807 CGAACTTGTC
* * * * * * *
14516817 AAAAACTTATTTAAGTAAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
* * * * *
14516882 CTTTTAC--T-ATTTATAACTTCGGTT-CTTGAAAGTATTCAAGATGATCCATT-CTTTCGAGC-
65 CTTTCACATTCTTTTATAACTTTGGTTCCTT-AAAGTATTCAAGATGATACATTCCTTT-GTGCA
* * * * **
14516941 AATCTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTTG-TCTTTTTG
128 AAT-TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCA-AAATAGTTTGAAATTTTT-
* * * * * *
14517004 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCT
190 TAAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCT
* *** * *
14517068 TGTACGAACTTCCAAACTGGTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
254 TGAACGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14517133 ACGAACTTCCAAACTAGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGACGA
319 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCT-TTTGTTCTTGACGA
*
14517198 ACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATC
383 ACATCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATC
14517263 CGAACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCA
448 CGAACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCA
14517328 TTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTT
513 TTCTTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTT
14517393 GTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTC
578 GTCTTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTC
* *
14517458 CTGGTTCTTGGACGAACTTCTGAATTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTG
643 CTGGTTCTTGGACGAACTTCAGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTG
14517523 GTTCTTGGA-AAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
708 GTTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAA
*
14517587 ACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCTATC
773 ACTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATC
*
14517652 ATTTGGTCTAAATTGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
838 ATTTGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
14517703 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
14517768 TTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
66 TTTCAC--ATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
14517833 ATTTCCAAACATAT-CATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
129 ATTTCCAAACAT-TCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAA
14517897 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
193 ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAA
*
14517962 CGAACTTTTGAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
258 CGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
14518027 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTATTTGTTCTTAGACGAACA
323 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCT-TTTGTTCTT-GACGAACA
14518092 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGA
386 TCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGA
*
14518157 ACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTC
451 ACTGGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTC
14518222 TTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
516 TTTCTAGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTC
14518287 TTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTG
581 TTTTTGTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTG
14518352 GTTCTTGGACGAACTTCAGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTT
646 GTTCTTGGACGAACTTCAGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTT
*
14518417 CTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACT
711 CTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACT
14518482 ATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATT
776 ATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATT
14518547 TGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
841 TGGTCTAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
14518595 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
*
14518660 TTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-CATACATTCCTTTGTGCAA
66 TTTCAC-A-TTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAA
*
14518724 ATTTCCAAACTTTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAA
129 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAA
14518789 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
194 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAC
14518854 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
259 GAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* * *
14518919 CTTCCAAACTTGTCAAAAAAACTTATTTACGTAAGAATTGTTTCTC-TTAGTTCTTGGATGAACA
324 CTTCCAAACTTGTC--AAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGTTCTT-GACGAACA
*
14518983 TCCGAACTTGTCAAA
386 TCCAAACTTGTCAAA
14518998 CTTTACGATT
Statistics
Matches: 1228, Mismatches: 49, Indels: 31
0.94 0.04 0.02
Matches are distributed among these distances:
885 36 0.03
886 27 0.02
889 3 0.00
890 253 0.21
891 605 0.49
892 275 0.22
893 29 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (888 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAC
TTTCACATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCTTTGTGCAAAT
TTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTTTAAACA
AGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGA
ACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTTTTGTTCTTGACGAACATCCAA
ACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTGG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCT
AGCAATTTTTCTAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTT
GTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCT
TGGACGAACTTCAGAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGG
ACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCA
AGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTC
TAAATTGTTCGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
Found at i:14518846 original size:215 final size:215
Alignment explanation
Indices: 14518379--14518873 Score: 624
Period size: 215 Copynumber: 2.3 Consensus size: 215
14518369 AGAACTTGTC
* * *
14518379 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTAT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * *
14518444 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCTAGAA
* * * * * * **
14518509 ATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTCGTCATTTTGTAA
130 ATTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTCGAAATTTTGTAA
*
14518574 ACAAGTTTTGGTCTTTAAATT
195 ACAAGTTTTGGACTTTAAATT
* *
14518595 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * *
14518659 CTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA-CATACATTCCTT-TGTGC
65 CTTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCT-AG-
* * *
14518722 AAA-TTTCCAAACTTTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTT
128 AAATTTTCCAAACATTCCATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTCGAAATTTTG
14518785 TAAACAAGTTTTGGACTGTT-AATT
192 TAAACAAGTTTTGGACT-TTAAATT
* * *
14518809 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AAAAACTTA-TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14518874 AACTTATTTA
Statistics
Matches: 241, Mismatches: 32, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
213 3 0.01
214 104 0.43
215 107 0.44
216 26 0.11
217 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATACATTCCTTCTAGAAA
TTTTCCAAACATTCCATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTCGAAATTTTGTAAA
CAAGTTTTGGACTTTAAATT
Found at i:14518956 original size:64 final size:64
Alignment explanation
Indices: 14518812--14518997 Score: 254
Period size: 62 Copynumber: 3.0 Consensus size: 64
14518802 GTTAATTAAT
* * **
14518812 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTC--AAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* *
14518874 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* * * *
14518938 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14518998 CTTTACGATT
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
62 86 0.78
63 2 0.02
64 22 0.20
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (64 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
Found at i:14519096 original size:829 final size:829
Alignment explanation
Indices: 14517093--14519484 Score: 3329
Period size: 891 Copynumber: 2.8 Consensus size: 829
14517083 ACTGGTAAAA
* * * *** *
14517093 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTAGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
* *
14517158 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTT-GACGAACATCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
*
14517222 TTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTGGTCAAACTTTTACGATT
131 TTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATT
14517287 TCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACA
196 TCTTTTATAACTTCGGTTCCAGAAAGTA-TCAAGATATCCATTCTTTCTAGCAATTTTTCTAACA
14517352 TTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGT
260 TTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGT
14517417 CCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAA
325 CCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAA
* *
14517482 TTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGA-AAACATCCGAACTT
390 CTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
14517546 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTT
455 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTT
*
14517611 CTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCTATCATTTGGTCTAAATTGTTTGTCATT
520 CTAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATT
14517676 TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTC
585 TTGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTC
14517741 TTGGACGAACTTTCAAACTTGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTA
650 TTGGACGAACTTTCAAACTTGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTA
*
14517806 TTCAAGATGATACATTCCTTTGTGCAAATTTCCAAACATATCATGCTCGAGAAATCACATCATTT
715 TTCAAGATCATACATTCCTTTGTGCAAATTTCCAAACATATCATGCTCGAGAAATCACATCATTT
14517871 GGTCAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
780 GGTCAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
14517921 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
14517986 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
* * * * *
14518051 TTTACGTGAGAATTGTTTCTCTATTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTATTT
131 TTTACGTAAGAATTGTTTCTC--TTAGTTCTTGGATGAACATCCGAACTTGTC--AAAC-T-TTT
* * * * * * * * * *
14518116 ACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATTTCT
190 AC----GATTTCTTT-TATAACTTC--GG-T-----TCC--A---G--AAAGTATCAAGATATC-
* * * * * * * * * * *
14518181 TTTATAACTTCGGTTCCAGAAAGTATTC-AAGATATCCATTCTTTCTAGCAATTTTTCTAACATT
234 -----CA-TTC-TTTCTAGCAATTTTTCTAACAT-TCCATGC--TC-AGGAA---ATC--GCA-T
* * *
14518245 CCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTCC
282 -AAT--T-TGG---T--C-TAA-----A-----TAGTTTGTCTTTTTGTAAACCAGTTTTGGTCC
*
14518310 TTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCAGAACT
327 TTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAACT
14518375 TGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
392 TGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGT
14518440 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCT
457 CAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCT
*
14518505 AGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTCGTCATTTT
522 AGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTTT
14518570 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
587 GTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTT
* *
14518635 GGACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
652 GGACGAACTTTCAAACTTGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATT
*
14518700 CAAGA-CATACATTCCTTTGTGCAAATTTCCAAAC-TTTCCATGCTCGAGAAATCACATCATTTG
717 CAAGATCATACATTCCTTTGTGCAAATTTCCAAACATAT-CATGCTCGAGAAATCACATCATTTG
14518763 GTCAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
781 GTCAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
14518812 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
*
14518877 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAAACT
66 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC--AAAAACT
14518942 TATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAAC-TTTACGA
129 TATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
14519006 TTTCTTTTATAACTTCGGTTCCAGAAAGTATCAAGATATCCATTCTTTCTAGCAATTTTTCTAAC
194 TTTCTTTTATAACTTCGGTTCCAGAAAGTATCAAGATATCCATTCTTTCTAGCAATTTTTCTAAC
14519071 ATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGG
259 ATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGG
14519136 TCCTTGAATTAAAAACTTATTTACGTGAGAGTTGT-TACTCTCCTGGTTCTTGGACGAACTTCTG
324 TCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGT-CTCTCCTGGTTCTTGGACGAACTTCTG
14519200 AACTTGTCAAAAACTTATGTACGTAAGAATTG-TT-TCTCTTGGTTCTTGGACGAACATCCGAAC
388 AACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC
* * * * ** * * *
14519263 TTGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCC
453 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCC
* * * * * * * *
14519328 TT-TGTGCAAA-TTTCCAAACAATCCATGC-TCGAGAAATCACATCATTTGGTCAAAATAGTTTG
518 TTCT-AG-AAATTTTTCGAACATTCCATGCTTGGA-AAATCCCATCATTTGGTCTAAATTGTTTG
** * * * * *
14519390 AAACTTT-TAAACAAGTTTTGGACTGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCT-CT
580 TCATTTTGTAAACAAGTTTTGGTCT-TTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCT
* **
14519452 CTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
644 -TGGTTCTTGGACGAACTTTCAAACTTGTCAAA
14519485 AACTTATTTA
Statistics
Matches: 1381, Mismatches: 107, Indels: 154
0.84 0.07 0.09
Matches are distributed among these distances:
825 2 0.00
826 79 0.06
827 134 0.10
828 98 0.07
829 170 0.12
831 25 0.02
833 4 0.00
834 1 0.00
835 5 0.00
839 10 0.01
840 7 0.01
842 3 0.00
843 1 0.00
845 2 0.00
846 1 0.00
848 5 0.00
849 1 0.00
850 3 0.00
852 2 0.00
853 1 0.00
854 7 0.01
855 8 0.01
856 2 0.00
858 17 0.01
859 7 0.01
860 2 0.00
861 7 0.01
862 17 0.01
864 2 0.00
865 4 0.00
866 11 0.01
868 3 0.00
870 2 0.00
871 2 0.00
872 2 0.00
873 3 0.00
874 1 0.00
875 2 0.00
878 2 0.00
879 2 0.00
880 1 0.00
881 9 0.01
882 7 0.01
886 5 0.00
889 4 0.00
890 2 0.00
891 391 0.28
892 276 0.20
893 29 0.02
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (829 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA
TTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTATAACTTCGGTTCCAGAAAGTATCAAGATATCCATTCTTTCTAGCAATTTTTCTAACAT
TCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGTC
CTTGAATTAAAAACTTATTTACGTGAGAGTTGTGTCTCTCCTGGTTCTTGGACGAACTTCTGAAC
TTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTC
TAGAAATTTTTCGAACATTCCATGCTTGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCATTT
TGTAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCT
TGGACGAACTTTCAAACTTGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTAT
TCAAGATCATACATTCCTTTGTGCAAATTTCCAAACATATCATGCTCGAGAAATCACATCATTTG
GTCAAAATAGTTTGAAATTTTTTAAACAAGTTTTGGACTGTTAATTAAT
Found at i:14519263 original size:60 final size:61
Alignment explanation
Indices: 14519146--14519270 Score: 180
Period size: 60 Copynumber: 2.0 Consensus size: 61
14519136 TCCTTGAATT
* * * * *
14519146 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTA-TCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
*
14519208 AAAAACTTATGTACGTAAGAATTGTT-TCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTATCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14519268 AAA
1 AAA
14519271 CTTTCACAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
60 34 0.60
62 23 0.40
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.35
Consensus pattern (61 bp):
AAAAACTTATGTACGTAAGAATTGTTATCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14519542 original size:62 final size:62
Alignment explanation
Indices: 14519424--14519668 Score: 334
Period size: 62 Copynumber: 4.0 Consensus size: 62
14519414 GTTAATTAAT
* * * ***
14519424 AACTTAGTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14519485 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* *
14519547 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * * * *
14519609 AACTTATTTACGTAAGAATTG-TT-TCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14519669 CTTTTACGAT
Statistics
Matches: 167, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
60 32 0.19
61 29 0.17
62 106 0.63
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14519759 original size:673 final size:676
Alignment explanation
Indices: 14518812--14521714 Score: 2939
Period size: 673 Copynumber: 4.3 Consensus size: 676
14518802 GTTAATTAAT
* * ***
14518812 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
* * * *
14518877 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAAACT
66 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTC--AAAAACT
14518942 TATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAAC-TTTACGA
129 TATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGA
14519006 TTTCTTTTATAACTTCGGTTCCAGAAAGTA-TCAAGATATCCATTCTTTCTAGCAATTTTTCTAA
194 TTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAA
14519070 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTG
259 CATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTG
14519135 GTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTG
324 GTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTG
14519200 AACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCT-TGGTTCTTGGACGAACATCCGAACT
389 AACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACT
* * * * * *
14519264 TGTCAAACTTTCACAAATTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATACATTCCT
454 TGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGATAATACATTCCT
* * * * * * **
14519329 TTGTGCAAA-TTTCCAAACAATCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGAAA
519 TTGAGCAAATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAGTTTGTCA
* * * *
14519393 CTTT-TAAACAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTC-TG
584 TTTTGTAAACAAGTTTTGGTCCT-TTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTG
* *
14519455 GTTCTTGAACGAACTTTTGAACTTGTCAAA
648 GTTCTTGGACGAAC-TTCGAACTTGTCAAA
*
14519485 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
14519550 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTA
66 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTA
*
14519615 TTTACGTAAGAATTGTTTCTCTTAGTTCTGGGATGAACATCCGAACTTGTCAAACTTTTACGATT
131 TTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATT
14519680 TCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACA
196 TCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACA
14519745 TTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGT
261 TTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGT
14519810 CCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAA
326 CCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAA
*
14519875 CTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTT
391 CTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTC-TGGTTCTTGGACGAACATCCGAACTT
* * *
14519940 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTT
455 GTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGATAATACATTCCTT
* * * * *
14520005 CT-AG-AAATTTTTCGAACATTCCATGCT-GGGAAAATCCCATCATTTGGTCTAAATTGTTTGTC
520 -TGAGCAAATTTTTCGAACATTCCATGCTCGAG-AAATCGCATAATTTGGTCAAAATAGTTTGTC
*
14520067 A-TTTGTAAACAAGTTTTGGT-CTTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC-CTT
583 ATTTTGTAAACAAGTTTTGGTCCTTT-AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
** **
14520129 GGTTCTTGGATAAACTTTC-AAAATGTC--A
647 GGTTCTTGGACGAAC-TTCGAACTTGTCAAA
* * *** ** * * *
14520157 AAC-T-TTCACGTG-TTCTT-TTATAAACT-TTGGTTCCTT-AAAGTA-TT-CAAGAC--G--AT
1 AACTTATTTACATGAGAATTGTT-T-CTCTCTTGGTT-CTTGAACGAACTTCCAA-ACTTGTCAA
* * * *** ** * * * *
14520210 ACA-TTCCTTT--GTGCA-AA-T-TTCCAAACATTCCATGC-TCGA-GAA-ATCACATCATTTGG
62 AAACTT-ATTTACGTG-AGAATTGTTTCTCTC-TT-TGTTCTTAGACGAACATC-CA-AACTT-G
* * * * * * * * *
14520266 TCAAAATAGTTTGAAATTT-TGTAAACAAGTT-TTGGACTGTTAATTAATAACTTAG-T-TACGT
120 TCAAAA-A-CTT---ATTTACGT-AAGAA-TTGTT--TCTCTT-AGT--T--CTTGGATGAACAT
** **** * * ** * * * * * *
14520327 GAGAA-TTGTTTCTCTCTT--G-GTTCTTGAACGAACTTTTGAACTTGTCAAAAACTTATTTACA
171 CCGAACTTGTCAAACTTTTACGATTTCTTTTA-TAAC-TTCG--GTT-CCAGAAA-GTA-TT-CA
*** * * * * * ** * * *** *
14520388 TGAGA-ATTGTTTCTCTCTTG--GTTCTTGGACGAAC-TTCCAAACT-TGTCAAAAAAC-TTATT
228 --AGATATCCATTCTTTCTAGCAATT-TT--TCTAACATTCCATGCTCAG-GAAATCGCATAATT
* * * * * * * ** ***** *
14520447 TACGT-GAGAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCAAACTTG--TCAAAAACTTATT
287 T-GGTCTA-AATAG-TT-TGTCTTT-TT-GTAAACCAGTTTTGGTCCTTGAATTAAAAACTTATT
* * * * * * *
14520509 TACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATCCGAACTTGTCAAAAACTTATTTA
346 TACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACT-TCTGAACTTGTCAAAAACTTATGTA
* *
14520573 AGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTAC----T-A
410 CGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* * * *
14520633 TTTATAACTTCGGTTCC-TGAAGTGTTCAAGATGATCCATT-CTTTGAGC-AATTTTTCGAACAT
475 TTTATAACTTCGGTTCCATAAAGTATTCAAGATAATACATTCCTTTGAGCAAATTTTTCGAACAT
*
14520695 TCCATGCTCGAGAAATCGCATAATTTGGT-ATAAATAGTTTGTCTTTTTGTAAACAAG-TTTGGT
540 TCCATGCTCGAGAAATCGCATAATTTGGTCA-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * *
14520758 CCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAA
604 CCTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAA
* *
14520823 CTGGTAAAAA
668 CTTGT-CAAA
* *
14520833 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA-TGTCCAAACTAGTCAAAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACT-TCCAAACTTGTCAAAAA
*
14520897 C-TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTCAAAAACTT
65 CTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTT
*
14520961 A-TTACGTAAGAATTGTTTCTCTTAGTTCTTGGATAAACATCCGAACTTGTCAAACTTTTACGAT
130 ATTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGAT
14521025 TTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCC-TTCTTTCTAGCAATTTTTCTAAC
195 TTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAAC
14521089 ATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAAACCAGTTTTG
260 ATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGT-AAACCAGTTTTG
14521154 GTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGTGT-CTCT-CTGGTTCTTGGACGAACTTCT
324 GTCCTTGAATTAAAAACTTATTTACGTGAGAGTTGT-TACTCTCCTGGTTCTTGGACGAACTTCT
14521217 GAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAAC
388 GAACTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAAC
* * *
14521282 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAGAAAATATTCAAGATAATCCATTCC
453 TTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGATAAT--A--CA
*
14521347 TTCTAAAAACTTTTACGAACCAGTGTCTAGCAATTTTTTGAACATTCCATGCTCGAGAAATCGCA
514 TTC------C-TTT--G----A--G-C-A--AATTTTTCGAACATTCCATGCTCGAGAAATCGCA
* * * * *
14521412 TAATTGGGTCTAAATAGTTTGTCTTTTTGTGAACAAGTTTTGGTCCTTCAATTAAAAACTTATTT
560 TAATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTTAATTAAAAACTTATTT
* *
14521477 ACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAAACTTCGAACTTGTGAAA
625 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCGAACTTGTCAAA
* * *
14521530 AACTTATTTACTTGAGTATTG-TTCTCTCTTGGTTCTTGTACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
* * * *
14521594 TTATTTACGTAAGAATTCTTTCTCTC-TTGCTC-TAGGACGAACTTCCAAACTTGTCAAAAAACT
66 TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTA-GACGAACATCCAAACTTGTC-AAAAACT
* ** * * *
14521657 TATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGATGAACTTTCGATCTTGTCAAA
129 TATTTACGTAAGAATT-GTT-TCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAA
14521715 AACTTGTTTA
Statistics
Matches: 1808, Mismatches: 272, Indels: 273
0.77 0.12 0.12
Matches are distributed among these distances:
659 3 0.00
660 9 0.00
661 9 0.00
662 14 0.01
663 4 0.00
664 9 0.00
665 12 0.01
666 103 0.06
667 48 0.03
668 43 0.02
669 31 0.02
670 22 0.01
671 182 0.10
672 122 0.07
673 347 0.19
674 32 0.02
675 200 0.11
676 24 0.01
677 36 0.02
678 67 0.04
679 112 0.06
680 10 0.01
681 14 0.01
682 1 0.00
683 6 0.00
684 9 0.00
685 14 0.01
686 10 0.01
687 9 0.00
688 3 0.00
690 1 0.00
692 1 0.00
693 1 0.00
695 1 0.00
696 63 0.03
697 121 0.07
698 78 0.04
699 6 0.00
700 31 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (676 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACATCCAAACTTGTCAAAAACTTA
TTTACGTAAGAATTGTTTCTCTTAGTTCTTGGATGAACATCCGAACTTGTCAAACTTTTACGATT
TCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATATCCATTCTTTCTAGCAATTTTTCTAACA
TTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACCAGTTTTGGT
CCTTGAATTAAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAA
CTTGTCAAAAACTTATGTACGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTG
TCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCATAAAGTATTCAAGATAATACATTCCTTT
GAGCAAATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCAAAATAGTTTGTCATT
TTGTAAACAAGTTTTGGTCCTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
CTTGGACGAACTTCGAACTTGTCAAA
Found at i:14519918 original size:62 final size:62
Alignment explanation
Indices: 14519819--14519945 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
14519809 TCCTTGAATT
* * * * *
14519819 AAAAACTTATTTACGTGAGAGTTGTTACTCTCCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
* * *
14519881 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
14519943 AAA
1 AAA
14519946 CTTTTACGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (62 bp):
AAAAACTTATGTACGTAAGAATTGTTACTCTCCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14520262 original size:214 final size:216
Alignment explanation
Indices: 14519881--14520352 Score: 582
Period size: 214 Copynumber: 2.2 Consensus size: 216
14519871 TGAACTTGTC
* * * **
14519881 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAAAATGTCAAA
* * *
14519946 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGATAATCCATTCCTTCTAGAA
66 CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
* * * * * * **
14520011 ATTTTTCGAACATTCCATGCTGGGAAAATCCCATCATTTGGTCTAAATTGTTTGTCA-TTTGTAA
131 ATTTTCCAAACATTCCATGCTGAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
*
14520075 ACAAGTTTTGGTCT-TTAAATT
196 ACAAGTTTTGGACTGTT-AATT
* * *
14520096 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGATAAACTTTC-AAAATGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAAAATGTCAAA
* ** * * *
14520159 CTTTCACG-TGTTCTTTTATAAACTTTGGTTCCTTAAAGTATTCAAGACGATACATTCCTT-TGT
66 CTTTCACGAT-TTCTTTTAT-AACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCT-A
14520222 GCAAA-TTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTGGTCAAAATAGTTTGAAATTT
128 G-AAATTTTCCAAACATTCCATGCT-GAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTT
14520285 TGTAAACAAGTTTTGGACTGTTAATT
191 TGTAAACAAGTTTTGGACTGTTAATT
* *
14520311 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
14520353 AACGAACTTT
Statistics
Matches: 220, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
212 1 0.00
213 26 0.12
214 97 0.44
215 83 0.38
216 13 0.06
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAAACATCCGAAAATGTCAAA
CTTTCACGATTTCTTTTATAACTTCGGTTCCAAAAACTATTCAAGACAATACATTCCTTCTAGAA
ATTTTCCAAACATTCCATGCTGAGAAAATCACATCATTTGGTCAAAATAGTTTGAAATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Found at i:14520396 original size:62 final size:62
Alignment explanation
Indices: 14520314--14520623 Score: 462
Period size: 62 Copynumber: 5.0 Consensus size: 62
14520304 GTTAATTAAT
* * **
14520314 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14520376 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC-AAA
* * *
14520439 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* *
14520501 AACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
* * *
14520563 AACTTATTTAAGTAAGAATTGTTTCTCTC-TGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14520624 CTTTTACTAT
Statistics
Matches: 228, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
61 30 0.13
62 139 0.61
63 59 0.26
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
Found at i:14520536 original size:125 final size:123
Alignment explanation
Indices: 14520314--14520623 Score: 453
Period size: 125 Copynumber: 2.5 Consensus size: 123
14520304 GTTAATTAAT
* **
14520314 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACTTCCGAACTTGTCAAAAAC
* *
14520379 TTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT-TCCAAACTTGTCAAAA
65 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAA-TATCCAAACTTGTC-AAA
* *
14520439 AACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTAGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTCCGAACTTGTCAAAAAC
* *
14520504 TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACCAATATCCGAACTTGTCAAA
65 TTATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAATATCCAAACTTGTCAAA
* * *
14520563 AACTTATTTAAGTAAGAATTGTTTCTCTC-TGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GACGAACTTCCGAACTTGTCAAA
14520624 CTTTTACTAT
Statistics
Matches: 168, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
123 28 0.17
124 31 0.18
125 108 0.64
126 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (123 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCCGAACTTGTCAAAAACT
TATTTACATAAGAATTGTTTCTCTCTTGGTTCTTGGACCAATATCCAAACTTGTCAAA
Found at i:14521011 original size:59 final size:62
Alignment explanation
Indices: 14520767--14521014 Score: 297
Period size: 61 Copynumber: 4.0 Consensus size: 62
14520757 TCCTTGAATT
* ** * * * * *
14520767 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGTACGAACTTTCAAACTGGTAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGT-C
* * ** *
14520830 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAATGTCCAAACTAGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
*
14520892 AAAAAC-TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
* ** *
14520953 AAAAACTTA-TTACGTAAGAATTG-TT-TCTCTTAGTTCTTGGATAAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
14521012 AAA
1 AAA
14521015 CTTTTACGAT
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
59 33 0.20
60 2 0.01
61 69 0.42
62 8 0.05
63 53 0.32
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14521241 original size:61 final size:61
Alignment explanation
Indices: 14521165--14521289 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 61
14521155 TCCTTGAATT
* * * * *
14521165 AAAAACTTATTTACGTGAGAGTTGTGTCTCTCTGGTTCTTGGACGAACTTCTGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTC
*
14521226 AAAAACTTATGTACGTAAGAATTGTTTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATGTACGTAAGAATTGTGTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTC
14521287 AAA
1 AAA
14521290 CTTTTACGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (61 bp):
AAAAACTTATGTACGTAAGAATTGTGTCTCTCTGGTTCTTGGACGAACATCCGAACTTGTC
Found at i:14521564 original size:61 final size:62
Alignment explanation
Indices: 14521465--14521896 Score: 581
Period size: 62 Copynumber: 7.0 Consensus size: 62
14521455 TCCTTCAATT
* * *
14521465 AAAAACTTATTTACGTGAGAATTGATTCTCTCTTGGTTCTTGGACGAAACTT-CGAACTTGTG
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCAAACTTGTC
* * *
14521527 AAAAACTTATTTACTTGAGTATTG-TTCTCTCTTGGTTCTTGTACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * *
14521588 AAAAACTTATTTACGTAAGAATTCTTTCTCTCTT-GCTCTAGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * * *
14521649 AAAAAACTTATTTACGTGAGAATTGGTTCTCTCTCGGTTCTTGGATGAACTTTCGATCTTGTC
1 -AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14521712 AAAAACTTGTTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14521774 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GTTCTTGGATGAACATCGAAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14521835 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTT-GACGAACATCCTAA-TTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14521894 AAA
1 AAA
14521897 CTTTTACGAT
Statistics
Matches: 327, Mismatches: 39, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
59 8 0.02
60 16 0.05
61 135 0.41
62 147 0.45
63 21 0.06
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14522211 original size:208 final size:211
Alignment explanation
Indices: 14521835--14522277 Score: 524
Period size: 208 Copynumber: 2.1 Consensus size: 211
14521825 GAAACTTGTC
* * * *
14521835 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGTTCTTGACGAACATCCTAATTGTCAAACTT
1 AAAAACTTATTTACGTGAGAA-TGTATCTCTCTGGTTCTTGACGAACATCCAAATTGTCAAACTT
* * * * * * * *
14521900 TTACGATTTCTTTTATAACTTCGGTTCCAGAAAGTATTCAAGATAATCCATTCTTTCTAGCAATT
65 TCAAGATTTCTTTTATAACTTAGATTCCA-AAAGTATTCAAGATAATCCATTCCTTCAAACAAAT
* * ** * * *
14521965 TTTCGAACATTCCAAGCTCGGGAAATCGCATGATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
129 TTCCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACA
*
14522030 AGTTTTGGTCT-TTAAATT
194 AGTTTTGGACTGTT-AATT
* * *
14522048 AAAAACTTATTTACGTGAGAATGTATCTC-CTGGTTCTTGGATGAACTTTCAAACTTGTCAAAC-
1 AAAAACTTATTTACGTGAGAATGTATCTCTCTGGTTCTT-GACGAACATCCAAA-TTGTCAAACT
14522111 TTCAAGA-TT-TTTTATAACTTAGATTCC-AAAGTATTCAAGA-AGATCCATTCCCTT-AAACAA
64 TTCAAGATTTCTTTTATAACTTAGATTCCAAAAGTATTCAAGATA-ATCCATT-CCTTCAAACAA
* *
14522171 ATTTCCAAACATTCCATGCTCGAAAAATCACATCATTTGGTGAAAATAGTTTGTCATTTTGTAAA
127 ATTTCCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
14522236 CAAGTTTTGGACTGTTAATT
192 CAAGTTTTGGACTGTTAATT
* *
14522256 AATAACTTAGTTACGTGAGAAT
1 AAAAACTTATTTACGTGAGAAT
14522278 TGGTTCTCTC
Statistics
Matches: 198, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
207 1 0.01
208 115 0.58
209 5 0.03
210 16 0.08
211 10 0.05
212 22 0.11
213 29 0.15
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (211 bp):
AAAAACTTATTTACGTGAGAATGTATCTCTCTGGTTCTTGACGAACATCCAAATTGTCAAACTTT
CAAGATTTCTTTTATAACTTAGATTCCAAAAGTATTCAAGATAATCCATTCCTTCAAACAAATTT
CCAAACATTCCAAGCTCGAAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAG
TTTTGGACTGTTAATT
Found at i:14522358 original size:62 final size:62
Alignment explanation
Indices: 14522259--14522504 Score: 295
Period size: 62 Copynumber: 4.0 Consensus size: 62
14522249 GTTAATTAAT
* * * *
14522259 AACTTAGTTACGTGAGAATTGGTTCTCTCTTGATTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
* ** * *
14522321 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
* * *
14522383 AACTTATTTCCGTGAGAATTGTTTCTCTCTTTGTT-TTGGACAAAATCCATCC-AAATTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC-AAA--CATCCGAACTTGTCAAA
* * *
14522446 AA-TTA-TTACGTAAGAATTGTTTCTATC-TGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
14522505 CTTTTACGAT
Statistics
Matches: 159, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
58 5 0.03
59 10 0.06
60 6 0.04
61 30 0.19
62 92 0.58
63 12 0.08
64 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAA
Found at i:14526590 original size:25 final size:25
Alignment explanation
Indices: 14526562--14526612 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
14526552 GCATCTTAAA
14526562 TATGTCATAAGCTAGCTATTAATTT
1 TATGTCATAAGCTAGCTATTAATTT
14526587 TATGTCATAAGCTAGCTATTAATTT
1 TATGTCATAAGCTAGCTATTAATTT
14526612 T
1 T
14526613 GTCCAGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (25 bp):
TATGTCATAAGCTAGCTATTAATTT
Found at i:14530807 original size:21 final size:21
Alignment explanation
Indices: 14530776--14530824 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
14530766 ACAGGAGTTG
*
14530776 ATGTCGTGACACCCAGATTCT
1 ATGTCGCGACACCCAGATTCT
* *
14530797 GTGTCGCGACACCCAGGTTCT
1 ATGTCGCGACACCCAGATTCT
14530818 ATGTCGC
1 ATGTCGC
14530825 AATATAGCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.18, C:0.31, G:0.24, T:0.27
Consensus pattern (21 bp):
ATGTCGCGACACCCAGATTCT
Found at i:14551495 original size:42 final size:42
Alignment explanation
Indices: 14551442--14551540 Score: 144
Period size: 42 Copynumber: 2.4 Consensus size: 42
14551432 TGCTCCTTCA
**
14551442 AGACATGAGTCTTCCTTAAATCATATTCTCATTCTCTTCCCG
1 AGACATGAGTCTTCCTTAAATCATATTCTCATTCTCAACCCG
* * **
14551484 AGACATTAGTCTTCCTTTAATTGTATTCTCATTCTCAACCCG
1 AGACATGAGTCTTCCTTAAATCATATTCTCATTCTCAACCCG
14551526 AGACATGAGTCTTCC
1 AGACATGAGTCTTCC
14551541 ATTTATGCAT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.37
Consensus pattern (42 bp):
AGACATGAGTCTTCCTTAAATCATATTCTCATTCTCAACCCG
Found at i:14555903 original size:103 final size:103
Alignment explanation
Indices: 14555724--14555932 Score: 382
Period size: 103 Copynumber: 2.0 Consensus size: 103
14555714 TAGACATGTT
14555724 TTTGGATGATTGTCACATAATATAAAGGCGATTTGGATAGTTTTTGATGAAATGTTACAACAATT
1 TTTGGATGATTGTCACATAATATAAAGGCGATTTGGATAGTTTTTGATGAAATGTTACAACAATT
*
14555789 AGTAGAATTTTGTGTATCCTTACAGTTCAACTTACTTA
66 AGTAGAATTTTGTGTATCCTTACAGTTCAACTTACTAA
* *
14555827 TTTGGATGATTGTCACGTAATATAAAGGCGATTTGGATAGTTTTTGATGAAATGTTACAACAGTT
1 TTTGGATGATTGTCACATAATATAAAGGCGATTTGGATAGTTTTTGATGAAATGTTACAACAATT
*
14555892 AGTAGAATTTTGTGTATCCTTACAGTTCTACTTACTAA
66 AGTAGAATTTTGTGTATCCTTACAGTTCAACTTACTAA
14555930 TTT
1 TTT
14555933 CGGTAGAATC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 102 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.41
Consensus pattern (103 bp):
TTTGGATGATTGTCACATAATATAAAGGCGATTTGGATAGTTTTTGATGAAATGTTACAACAATT
AGTAGAATTTTGTGTATCCTTACAGTTCAACTTACTAA
Found at i:14556138 original size:21 final size:21
Alignment explanation
Indices: 14556095--14556171 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
14556085 AAAGTTTTTA
* *
14556095 GTATCGGTA-AATGTATGATTT
1 GTATCGGTAGAA-GTATCACTT
* *
14556116 GTTTCGGTAGAAGTCTCACTT
1 GTATCGGTAGAAGTATCACTT
**
14556137 GTATCGGTAGAAGTATCACAA
1 GTATCGGTAGAAGTATCACTT
14556158 GTATCGGTAGAAGT
1 GTATCGGTAGAAGT
14556172 TTACACTATT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
21 45 0.96
22 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (21 bp):
GTATCGGTAGAAGTATCACTT
Found at i:14557978 original size:14 final size:15
Alignment explanation
Indices: 14557954--14557984 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
14557944 GAGTTGGTTG
14557954 AAAGCATAAAAATAA
1 AAAGCATAAAAATAA
14557969 AAAG-ATAAAAATAA
1 AAAGCATAAAAATAA
14557983 AA
1 AA
14557985 TAAAATAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAGCATAAAAATAA
Found at i:14562278 original size:20 final size:21
Alignment explanation
Indices: 14562238--14562279 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14562228 GTATATATAA
**
14562238 ATATTTTAAGTTTTTTTAAAT
1 ATATTTTAAGTTTTTAGAAAT
14562259 ATATTTTAA-TTTTTAGAAAT
1 ATATTTTAAGTTTTTAGAAAT
14562279 A
1 A
14562280 GAACTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
ATATTTTAAGTTTTTAGAAAT
Found at i:14563163 original size:20 final size:19
Alignment explanation
Indices: 14563125--14563161 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14563115 TTTTTATTTC
14563125 TTTTTTTAAAAACATAAAT
1 TTTTTTTAAAAACATAAAT
14563144 TTTTATTTAAAAA-ATAAA
1 TTTT-TTTAAAAACATAAA
14563162 ATACTTGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTTTTTAAAAACATAAAT
Found at i:14564281 original size:24 final size:24
Alignment explanation
Indices: 14564220--14564282 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
14564210 TAGACTAATA
* *
14564220 AGAGTTTGACTCAAACAAATAAAC
1 AGAGTTTAACTGAAACAAATAAAC
* * *
14564244 AGAGTTTAATTGAAACAATTAAAT
1 AGAGTTTAACTGAAACAAATAAAC
14564268 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
14564283 GATTATTTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAC
Found at i:14566260 original size:24 final size:24
Alignment explanation
Indices: 14566199--14566261 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
14566189 TAGACTAATA
* *
14566199 AGAGTTTCACTCAAACAAATAAAT
1 AGAGTTTAACTGAAACAAATAAAT
* *
14566223 AGAGTTTAATTGAAACAATTAAAT
1 AGAGTTTAACTGAAACAAATAAAT
14566247 AGAGTTTAACTGAAA
1 AGAGTTTAACTGAAA
14566262 GATTATTTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.29
Consensus pattern (24 bp):
AGAGTTTAACTGAAACAAATAAAT
Found at i:14572724 original size:23 final size:24
Alignment explanation
Indices: 14572696--14572743 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
14572686 GAGGATTTAG
* *
14572696 TAATGGTGTTAGCAGTGG-GGTTT
1 TAATGGGGTTAGCAATGGTGGTTT
14572719 TAATGGGGTTAGCAATGGTGGTTT
1 TAATGGGGTTAGCAATGGTGGTTT
14572743 T
1 T
14572744 TGGAGGACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.19, C:0.04, G:0.38, T:0.40
Consensus pattern (24 bp):
TAATGGGGTTAGCAATGGTGGTTT
Found at i:14574592 original size:11 final size:11
Alignment explanation
Indices: 14574576--14574609 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14574566 CTCTGATGTA
14574576 AATATTAAAAT
1 AATATTAAAAT
14574587 AATATTAAAAT
1 AATATTAAAAT
*
14574598 AACTATAAAAAT
1 AA-TATTAAAAT
14574610 TTCCATAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 13 0.62
12 8 0.38
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (11 bp):
AATATTAAAAT
Found at i:14577939 original size:42 final size:42
Alignment explanation
Indices: 14577892--14577977 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
14577882 CGGGAGCAAT
*
14577892 GAAGCTCCTTTCCTAGAACTGTTGTGGGTTGGGGAACCCCAC
1 GAAGCTCCTTTCCTAGAACTGTTGTGGGTTGGGAAACCCCAC
*
14577934 GAAGCTCTTTTCCTAGAACTGTTGTGGGTTGGGAAACCCCAC
1 GAAGCTCCTTTCCTAGAACTGTTGTGGGTTGGGAAACCCCAC
14577976 GA
1 GA
14577978 TAATGGGTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (42 bp):
GAAGCTCCTTTCCTAGAACTGTTGTGGGTTGGGAAACCCCAC
Found at i:14579225 original size:30 final size:30
Alignment explanation
Indices: 14579117--14579403 Score: 266
Period size: 29 Copynumber: 9.8 Consensus size: 30
14579107 TAGAGCAAAA
* * * ** *
14579117 TTTGAAAAGTTCATGGGTAAAAATAAAAAT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* *
14579147 TTTG-GAAGTTTGAGGGTAAAAATGTGATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
**
14579176 TTTG-GAAGTTCCAGGGTAAAAATGTAATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* *** *
14579205 TTTGAGAACTTCGGGGGTAAAAATGTGATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* *
14579235 TTTGA-AAGTTTGAGGGTTAAAATGTAATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
14579264 TTTG-GAAGTTTAAGGGTAAAAATGTAATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* **
14579293 TTTGAGAAGTTTAGGGGTAAAAATGT-GGT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
*
14579322 TTTG-GAAGTTT-AGGGTTAAAATGTAATT
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* * *
14579350 TTAGAGAAGTTTAGGGGTCAAAATGTAA-T
1 TTTGAGAAGTTTAAGGGTAAAAATGTAATT
* * *
14579379 TTTGTAAAAGTTTAGGGGTCAAAAT
1 TTTG-AGAAGTTTAAGGGTAAAAAT
14579404 ATGATTTATG
Statistics
Matches: 216, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
27 11 0.05
28 11 0.05
29 112 0.52
30 82 0.38
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (30 bp):
TTTGAGAAGTTTAAGGGTAAAAATGTAATT
Found at i:14579244 original size:59 final size:58
Alignment explanation
Indices: 14579117--14579425 Score: 268
Period size: 59 Copynumber: 5.3 Consensus size: 58
14579107 TAGAGCAAAA
* ** *
14579117 TTTGAAAAGTTCATGGGTAAAAATAAAAATTTTGGAAGTTTGAGGGTAAAAATGTGATT
1 TTTG-AAAGTTCAGGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTGATT
* * * *
14579176 TTTGGAAGTTCCA-GGGTAAAAATGTAATTTTTGAGAACTTCGGGGGTAAAAATGTGATT
1 TTTGAAAGTT-CAGGGGTAAAAATGTAATTTTTG-GAAGTTTGAGGGTAAAAATGTGATT
* * * *
14579235 TTTGAAAGTT-TGAGGGTTAAAATGTAATTTTTGGAAGTTTAAGGGTAAAAATGTAATT
1 TTTGAAAGTTCAG-GGGTAAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTGATT
* ** * *
14579293 TTTGAGAAGTTTAGGGGTAAAAATGT-GGTTTTGGAAGTTT-AGGGTTAAAATGTAATT
1 TTTGA-AAGTTCAGGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTGATT
* * * ** * *
14579350 TTAGAGAAGTTTAGGGGTCAAAATGTAATTTTGTAAAAGTTT-AGGGGTCAAAATATGATT
1 TTTGA-AAGTTCAGGGGTAAAAATGTAATTTT-TGGAAGTTTGA-GGGTAAAAATGTGATT
* *
14579410 TATGGAAAGTTTAGGG
1 T-TTGAAAGTTCAGGG
14579426 ACCTTTTGGG
Statistics
Matches: 210, Mismatches: 30, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
57 40 0.19
58 62 0.30
59 80 0.38
60 25 0.12
61 3 0.01
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (58 bp):
TTTGAAAGTTCAGGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGTAAAAATGTGATT
Found at i:14579266 original size:88 final size:86
Alignment explanation
Indices: 14579146--14579381 Score: 321
Period size: 88 Copynumber: 2.7 Consensus size: 86
14579136 AAAATAAAAA
* * *
14579146 TTTTGGAAGTTTGAGGGTAAAAATGTGATTTTTGGAAGTTCCAGGGTAAAAATGTAATTTTTGAG
1 TTTTGGAAGTTTGAGGGTTAAAATGTAATTTTTGGAAGTT-AAGGGTAAAAATGTAATTTTTGAG
* *
14579211 AACTTCGGGGGTAAAAATGTGAT
65 AACTTCAGGGGTAAAAATGTG-G
*
14579234 TTTTGAAAGTTTGAGGGTTAAAATGTAATTTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGAG
1 TTTTGGAAGTTTGAGGGTTAAAATGTAATTTTTGGAAG-TTAAGGGTAAAAATGTAATTTTTGAG
* *
14579299 AAGTTTAGGGGTAAAAATGTGG
65 AACTTCAGGGGTAAAAATGTGG
* * *
14579321 TTTTGGAAGTTT-AGGGTTAAAATGTAATTTTAGAGAAGTTTAGGGGTCAAAATGTAATTTT
1 TTTTGGAAGTTTGAGGGTTAAAATGTAATTTTTG-GAAG-TTAAGGGTAAAAATGTAATTTT
14579382 GTAAAAGTTT
Statistics
Matches: 134, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
86 20 0.15
87 36 0.27
88 76 0.57
89 2 0.01
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (86 bp):
TTTTGGAAGTTTGAGGGTTAAAATGTAATTTTTGGAAGTTAAGGGTAAAAATGTAATTTTTGAGA
ACTTCAGGGGTAAAAATGTGG
Found at i:14579419 original size:30 final size:29
Alignment explanation
Indices: 14579117--14579425 Score: 238
Period size: 30 Copynumber: 10.6 Consensus size: 29
14579107 TAGAGCAAAA
* * * **
14579117 TTTGAAAAGTTCATGGGTAAAAATAAAAAT
1 TTTGGAAAGTTTAGGGGTAAAAAT-GTAAT
*
14579147 TTTGG-AAGTTT-GAGGGTAAAAATGTGATT
1 TTTGGAAAGTTTAG-GGGTAAAAATGT-AAT
*
14579176 TTTGG-AAGTTCCA-GGGTAAAAATGTAAT
1 TTTGGAAAGTT-TAGGGGTAAAAATGTAAT
* * ** *
14579204 TTTTGAGAACTTCGGGGGTAAAAATGTGAT
1 TTTGGA-AAGTTTAGGGGTAAAAATGTAAT
* *
14579234 TTTTGAAAGTTT-GAGGGTTAAAATGTAATT
1 TTTGGAAAGTTTAG-GGGTAAAAATGTAA-T
*
14579264 TTTGG-AAGTTTAAGGGTAAAAATGTAAT
1 TTTGGAAAGTTTAGGGGTAAAAATGTAAT
* **
14579292 TTTTGAGAAGTTTAGGGGTAAAAATGTGGT
1 TTTGGA-AAGTTTAGGGGTAAAAATGTAAT
*
14579322 TTTGG-AAGTTTA-GGGTTAAAATGTAAT
1 TTTGGAAAGTTTAGGGGTAAAAATGTAAT
* *
14579349 TTTAGAGAAGTTTAGGGGTCAAAATGTAAT
1 TTTGGA-AAGTTTAGGGGTAAAAATGTAAT
* * * *
14579379 TTTGTAAAAGTTTAGGGGTCAAAATATGAT
1 TTTG-GAAAGTTTAGGGGTAAAAATGTAAT
14579409 TTATGGAAAGTTTAGGG
1 TT-TGGAAAGTTTAGGG
14579426 ACCTTTTGGG
Statistics
Matches: 228, Mismatches: 34, Indels: 34
0.77 0.11 0.11
Matches are distributed among these distances:
27 16 0.07
28 19 0.08
29 82 0.36
30 108 0.47
31 3 0.01
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (29 bp):
TTTGGAAAGTTTAGGGGTAAAAATGTAAT
Found at i:14584136 original size:29 final size:29
Alignment explanation
Indices: 14584104--14584171 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
14584094 ATAAAATGTG
*
14584104 ATTTTTGGAAGTTCGA-GGGTCAAAATATA
1 ATTTTTGGAAGTT-GAGGGGTCAAAATACA
* *
14584133 ATTTTAGAGAAGTTTAGGGGTCAAAATACA
1 ATTTTTG-GAAGTTGAGGGGTCAAAATACA
14584163 A-TTTTGGAA
1 ATTTTTGGAA
14584172 AAGTCTAGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
28 3 0.09
29 11 0.33
30 19 0.58
ACGTcount: A:0.37, C:0.06, G:0.24, T:0.34
Consensus pattern (29 bp):
ATTTTTGGAAGTTGAGGGGTCAAAATACA
Found at i:14584154 original size:30 final size:29
Alignment explanation
Indices: 14584120--14584211 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 29
14584110 GGAAGTTCGA
*
14584120 GGGTCAAAATATAATTTTAGAGAAGTTTAG
1 GGGTCAAAATATAATTTTGGA-AAGTTTAG
* *
14584150 GGGTCAAAATACAATTTTGGAAAAGTCTAG
1 GGGTCAAAATATAATTTTGG-AAAGTTTAG
* *
14584180 GGGTTAAAATATGATTTATGGAAAGTTTAG
1 GGGTCAAAATATAATTT-TGGAAAGTTTAG
14584210 GG
1 GG
14584212 ACCTTCTAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
30 49 0.92
31 4 0.08
ACGTcount: A:0.38, C:0.04, G:0.26, T:0.32
Consensus pattern (29 bp):
GGGTCAAAATATAATTTTGGAAAGTTTAG
Found at i:14596681 original size:60 final size:63
Alignment explanation
Indices: 14596527--14596698 Score: 235
Period size: 60 Copynumber: 2.8 Consensus size: 63
14596517 AATAACTTAG
*
14596527 TTACGTGAGAATTGTTTCTCTC-TAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTA-TT
* * *
14596590 TTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAAATC-TA-T
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
* * * *
14596650 TTACATGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
14596699 CTGAAACTTT
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
60 39 0.40
61 5 0.05
62 2 0.02
63 33 0.34
64 19 0.19
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (63 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
Found at i:14596958 original size:62 final size:61
Alignment explanation
Indices: 14596886--14597045 Score: 196
Period size: 62 Copynumber: 2.6 Consensus size: 61
14596876 AATTGGTTCT
* * * *
14596886 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA-ACTTAGTTACATAAGAACTGTTACA
** * * *
14596948 CTCTTGGTTCTTGGATTAAC-TTCCGAACTTGTCCAAAACTTAGTTACGTAAGAATTGTTACT
1 CTCTTGGTTCTTGGACGAACATT-CGAACTTGT-CAAAACTTAGTTACATAAGAACTGTTACA
*
14597010 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
14597046 CTTTTAGGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
61 6 0.07
62 72 0.87
63 5 0.06
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (61 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAACTTAGTTACATAAGAACTGTTACA
Found at i:14597004 original size:341 final size:332
Alignment explanation
Indices: 14596432--14597247 Score: 855
Period size: 341 Copynumber: 2.4 Consensus size: 332
14596422 TCCTTTGAGC
* * * * * * * * *
14596432 AAATTTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGT-CAAA-A-TTTTTCATTTTGT
1 AAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCCAAATAGTGTGTCATTTTCT
* ** * *
14596494 AAACAAGTTTTGGACAGTT-AATTAATAACTTAGTTACGTGAGAATTGTTTCTCTC-TAGTTCTT
66 AAAAAAG-TTTGG-CCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTT
* * *
14596557 GGACGAAC-TTCCAAACTTGTCAAAAACTTATTTTTACGTGAAAAATGTTTCTCTCTTGGTTCTT
129 GGACGAACATT-CGAACTTGTCAAAAACTTA-TTTTACATGAAAAATGTTTCACTCTTGGTTCTT
* * *
14596621 GGACGAACTTCCAACTTGTCAAAATCTATTTACATGAGAATTGTTTCTCTCTTGGATCTTGGACG
192 GGACGAACTTCCAACTTGTCAAAATCTAGTTACATAAGAATTGTTACTCTCTTGGATCTTGGACG
* * **
14596686 AACATCCGAACTTCTGAAACTTTTACGATTTCTTTAATAATACTCCAGTTCCTGAAAGTATCCAA
257 AACATCCGAACTTCTCAAACTTTTACGATTTCTTTAAT-A-ACTCCAGTTCC-AAAAAAATCCAA
* *
14596751 GATGATCCATTCTTCG
319 GATAATCC-TTC-TAG
* * *
14596767 ATCAGTTTTTCGAACATCCCATGCTCGGAAAAATCGCATAATTTGGTCCAAATAGAT-T-TCTTT
1 A--AATTTTTCGAACATCCCATGCTC-GAAAAATCCCATAATTTGGTCCAAATAG-TGTGTCATT
* * *
14596830 TTCTAAAAAAGTTTCGGTCC-TTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGG
62 TTCTAAAAAAGTTT-GG-CCTTTAAATTAAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTAG
* ** *
14596893 TTCTTGGACGAACATTCGAACTTGTCAAAGACTTA-TTTACATGAGTACTGTTTCACTCTTGGTT
124 TTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTTACATGAAAAATGTTTCACTCTTGGTT
** * *
14596957 CTTGGATTAACTTCCGAACTTGTCCAAAA-CTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCT
189 CTTGGACGAACTTCC-AACTTGT-CAAAATC-TAGTTACATAAGAATTGTTACTCTCTTGGATCT
* * * * * *
14597021 TGGACGAACATCCGAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGGTTCCAAAAAAATT
251 TGGACGAACATCCGAACTTCTCAAACTTTTACGATTTCTTTAATAACTCCAGTTCCAAAAAAATC
* *
14597086 CTAGTTAATCCTTCTAG
316 CAAGATAATCCTTCTAG
* * * * *
14597103 AAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTCATTTTGT
1 AAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCCAAATAGTGTGTCATTTTCT
* * *
14597168 AAACAAGTTTGGCCTTTAAATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGG
66 AAAAAAGTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
* *
14597233 ACTAACATCCGAACT
131 ACGAACATTCGAACT
14597248 CTGAAACTTT
Statistics
Matches: 403, Mismatches: 59, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
332 3 0.01
333 84 0.21
334 38 0.09
335 1 0.00
336 3 0.01
337 22 0.05
338 30 0.07
339 56 0.14
340 57 0.14
341 106 0.26
342 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (332 bp):
AAATTTTTCGAACATCCCATGCTCGAAAAATCCCATAATTTGGTCCAAATAGTGTGTCATTTTCT
AAAAAAGTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
ACGAACATTCGAACTTGTCAAAAACTTATTTTACATGAAAAATGTTTCACTCTTGGTTCTTGGAC
GAACTTCCAACTTGTCAAAATCTAGTTACATAAGAATTGTTACTCTCTTGGATCTTGGACGAACA
TCCGAACTTCTCAAACTTTTACGATTTCTTTAATAACTCCAGTTCCAAAAAAATCCAAGATAATC
CTTCTAG
Found at i:14597562 original size:62 final size:62
Alignment explanation
Indices: 14597429--14597566 Score: 149
Period size: 62 Copynumber: 2.3 Consensus size: 62
14597419 GGGCAGTTGG
* * *
14597429 TTCTCTCTTGG-TC-TTGAACGAACTTTCGAACTTGTAAAAGATTATTTACACGAGTACTAT
1 TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGTAAAAGATTATTTACACAAGAACTAT
* * ** * *
14597489 TTCACTCTTGGTTCTTTG-TCGAACTTCCGAACTTGTCAAAA-ACTTATTTACGTAAGAATTGT
1 TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGT-AAAAGA-TTATTTACACAAGAACTAT
14597551 TTCTCTCTTGGTTCTT
1 TTCTCTCTTGGTTCTT
14597567 GGATGACATC
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
60 10 0.16
61 19 0.30
62 35 0.55
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (62 bp):
TTCTCTCTTGGTTCTTTGAACGAACTTCCGAACTTGTAAAAGATTATTTACACAAGAACTAT
Found at i:14597749 original size:548 final size:549
Alignment explanation
Indices: 14596647--14598335 Score: 2075
Period size: 548 Copynumber: 3.1 Consensus size: 549
14596637 TGTCAAAATC
* *
14596647 TATTTACATGAGAATTGTTTCTCTCTTGGATCTTGGACGAACATCCGAACTTCTGAAACTTTTAC
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAAC-TCTGAAACTTTTAC
* * * * * * *
14596712 GATTTCTTTAATAATACTCCAGTTCCTGAAAGTATCCAAGATGATCCATTC-TTCGATC-AGTTT
65 GATTTCTTTTAT-A-ACTTCGGTTCCTGAAAATTTCCAAGATGATCCATTCTTTCGAGCAAATTT
* * * * * *
14596775 TTCGAACATCCCATGCTCGGAAAAATCGCATAATTTGGTCCAAATAGATT-TCTTTTTCTAAAAA
128 TTCGAACATACCATGCTCGG-GAAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACA
*
14596839 AGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGA
192 AGTTTCGGTCTTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGG-TCTTGGACGA
* *
14596904 ACATTCGAACTTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATTAACT
256 AC-TTCGAACTTGTAAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACT
* * * *
14596969 TCCGAACTTGTCCAAAACTTAGTTACGTAAGAATTGTTACTCTCTTGGTTCTTGGACGAACATCC
320 TCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCC
* * * *
14597034 GAACTTGTCAAACTTTTAGGATTTCTTTTATAACTTCGGTTCCAAAAAAATTCTAGTTAATCC-T
385 GAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCC-AAAATATTCAAGTTAATCCAT
* * * * * *
14597098 T-C-TAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCTTCATTTGGTCTAAATAGTGTGTC
449 TCCTTCGAAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTC
*
14597161 ATTTTGTAAACAAG-TTTGGCCTTTAAATCAAAAACT
514 ATTTTGTAAACAAGTTTTGGCCTTT-AATTAAAAACT
* * *
14597197 TATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAACTCTGAAACTTTTACT
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCTGAAACTTTTACG
* * *
14597262 ATTTCTTTTATAACTTCGGTTCCTGAAAATTTCCAGGATGATCCATTCTTTCTA-CAAATTTTTT
66 ATTTCTTTTATAACTTCGGTTCCTGAAAATTTCCAAGATGATCCATTCTTTCGAGCAAATTTTTC
*
14597326 GAACAT-CCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTT
131 GAACATACCATGCTCGGGAAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTT
* *
14597390 TCGGTCTTTGAATTAAAAACTTATTTGACG-GGCAGTTGGTTCTCTCTTGGTCTTGAACGAACTT
196 TCGGTCTTTGAATTAAAAACTTATTT-ACGTGGCAATTGGTTCTCTCTTGGTCTTGGACGAAC-T
* * *
14597454 TCGAACTTGTAAAAGA-TTATTTACACGAGTACTATTTCACTCTTGGTTCTTTG-TCGAACTTCC
259 TCGAACTTGTAAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGAT-GAACTTCC
14597517 GAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCGAA
323 GAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAA
*
14597581 CTAGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAGTATTCAAGTTAATCCATTCC
388 CTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAA-TATTCAAGTTAATCCATTCC
*
14597646 TTCTGAAATTTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCAT
452 TTC-GAAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCAT
*
14597711 TTTGTAAACAAGTTTTGGCATTTAATTAAAAACT
516 TTTGTAAACAAGTTTTGGCCTTTAATTAAAAACT
* * * * * *
14597745 TATTTACGTGAGAATTGTATCTC-CTT-GTTGTTGGACGAACTTTCAAACT-TGTCAAACTTTCA
1 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCTG--AAACTTTTA
* * * *
14597807 GGAGTTCTTTTATAACTTAGGTTCCTTAAAGCA-TT-CAAGATGATCCATTCCTTT-GAGCAAA-
64 CGATTTCTTTTATAACTTCGGTTCCTGAAA--ATTTCCAAGATGATCCATT-CTTTCGAGCAAAT
* * * * * * * *
14597868 TTTCCAAACATACCATGCTCGAGAAATCACATCATTTGGTGAAAATAATTTGTCATTTTGTAAAC
126 TTTTCGAACATACCATGCTCGGGAAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAAC
* * * * * * *
14597933 AAGTTTTGGACTGTGAATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTAGTCTTGGACG
191 AAGTTTCGGTCTTTGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTCTTGGACG
* * * *
14597997 AACTTC-AACTTGTCAAAA-ACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAAC
255 AACTTCGAACTTGT-AAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAAC
* * *
14598059 TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGATGAACATC
319 TTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATC
* * * * * *
14598124 CGAACTTCTGAAACTTTTACGATTTCTTTTATAACTTC-AGTTCCTGAAAATGTCCAAGATGATC
384 CGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGA-TTCC--AAAATATTCAAGTTAATC
* * * *
14598188 CATTCTTTCGACCAATTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTATATAG
446 CATTCCTTCGA--AA-TTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAG
* * *
14598253 TTTGTC-TTTTGTAAACAAGTTTCGGTCCTTGAATT-AAACCT
508 TTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAATTAAAAACT
* *
14598294 TATTTACGTCG-CAATTGGTTCTCTCTTGGTTCTTGGACGAAC
1 TATTTACGT-GAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
14598336 TTTCGAACCT
Statistics
Matches: 997, Mismatches: 108, Indels: 67
0.85 0.09 0.06
Matches are distributed among these distances:
543 4 0.00
544 60 0.06
545 96 0.10
546 150 0.15
547 238 0.24
548 246 0.25
549 82 0.08
550 108 0.11
551 13 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (549 bp):
TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTCTGAAACTTTTACG
ATTTCTTTTATAACTTCGGTTCCTGAAAATTTCCAAGATGATCCATTCTTTCGAGCAAATTTTTC
GAACATACCATGCTCGGGAAATCGCATAATTTGGTCAAAATAGTTTGTCTTTTTGTAAACAAGTT
TCGGTCTTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTCTTGGACGAACTTC
GAACTTGTAAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGATGAACTTCCGAA
CTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCGAACTT
GTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAATATTCAAGTTAATCCATTCCTTCG
AAATTTTTCGAACATCCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGT
AAACAAGTTTTGGCCTTTAATTAAAAACT
Found at i:14597941 original size:213 final size:212
Alignment explanation
Indices: 14597526--14598013 Score: 587
Period size: 213 Copynumber: 2.3 Consensus size: 212
14597516 CGAACTTGTC
* * * * *
14597526 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATG-ACATCCGAACTAGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTC-AACTTGTCAAA
* * * * * *
14597590 CTTTTACGATTTCTTTTATAACTTCGATTCCAAAAGTATTCAAGTTAATCCATTCCTTCTGAAAT
64 CTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAGCATTCAAGATAATCCATTCCTTCTGAAAA
* * * * * *
14597655 TTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
129 TTTCCAAACATACCATGCTCGGAAAATCACATAATTTGGTCAAAATAATTTGTCATTTTGTAAAC
*
14597720 AAGTTTTGG-CAT-TTAATT
194 AAGTTTTGGAC-TGTGAATT
* *
14597738 AAAAACTTATTTACGTGAGAATTGTATCTC-CTT-GTTGTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTC-AACTTGTCAAA
* * * *
14597801 CTTTCAGGAGTTCTTTTATAACTTAGGTTCCTTAAAGCATTCAAGATGATCCATTCCTT-TGAGC
64 CTTTCACGAGTTCTTTTATAACTTAGATTCC-AAAAGCATTCAAGATAATCCATTCCTTCTGA--
* *
14597865 AAATTTCCAAACATACCATGCTC-GAGAAATCACATCATTTGGTGAAAATAATTTGTCATTTTGT
126 AAATTTCCAAACATACCATGCTCGGA-AAATCACATAATTTGGTCAAAATAATTTGTCATTTTGT
14597929 AAACAAGTTTTGGACTGTGAATT
190 AAACAAGTTTTGGACTGTGAATT
* *
14597952 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTAG-TCTTGGACGAACTTCAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCAACTTGTCAAA
14598014 AACTTATTTA
Statistics
Matches: 236, Mismatches: 31, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
210 9 0.04
211 46 0.19
212 53 0.22
213 77 0.33
214 36 0.15
215 14 0.06
216 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (212 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTAGATTCCAAAAGCATTCAAGATAATCCATTCCTTCTGAAAATT
TCCAAACATACCATGCTCGGAAAATCACATAATTTGGTCAAAATAATTTGTCATTTTGTAAACAA
GTTTTGGACTGTGAATT
Found at i:14598051 original size:59 final size:61
Alignment explanation
Indices: 14597955--14598130 Score: 268
Period size: 59 Copynumber: 2.9 Consensus size: 61
14597945 GTGAATTAAT
* * *
14597955 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTCTTGGACGAACTT-C-AACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCTTGGATGAACTTCCAAACTTGTCAAA
14598014 AACTTATTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TCTTGGATGAACTTCCAAACTTGTCAAA
* *
14598075 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGATGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TCTTGGATGAACTTCCAAACTT
14598131 CTGAAACTTT
Statistics
Matches: 107, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
58 2 0.02
59 41 0.38
60 1 0.01
61 40 0.37
62 23 0.21
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTCTTGGATGAACTTCCAAACTTGTCAAA
Found at i:14598363 original size:885 final size:888
Alignment explanation
Indices: 14597188--14599022 Score: 3007
Period size: 885 Copynumber: 2.1 Consensus size: 888
14597178 GGCCTTTAAA
*
14597188 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCTTGGACTAACATCCGAAC-TCTGA
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA-TAACATCCGAACTTCTGA
* * * * *
14597252 AACTTTTACTATTTCTTTTATAACTTCGGTTCCTGAAAATTTCCAGGATGATCCATTCTTTCTAC
65 AACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAATGTCCAAGATGATCCATTCTTTCGAC
14597317 AAATTTTTTGAACATCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
130 AAATTTTTTGAACATCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTA
* * *
14597382 AACAAGTTTCGGTCTTTGAATTAAAAACTTATTTGACGGGCAGTTGGTTCTCTCTTGGTCTTGAA
195 AACAAGTTTCGGTCCTTGAATTAAAAACTTATTTGACGCGCAATTGGTTCTCTCTTGGTCTTGAA
* *
14597447 CGAACTTTCGAACTTGTAAAAGATTATTTACACGAGTACTATTTCACTCTTGGTTCTTTG-TCGA
260 CGAACTTTCGAACCTGTAAAAGATTATTTACACGAGTACTATTTCACTCTTGGTTCTTGGAT-GA
*
14597511 ACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGATGACAT
324 ACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACAT
14597576 CCGAACTAGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCC-AAAAGTATTCAAGTTAATC
389 CCGAACTAGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGTTAATC
14597640 CATTCCTTCT-GAAATTTTTCGAACATGCCATGCTCGGAAAATCCCATAATTTGGTCTAAATAGT
454 CATTCCTTCTAGAAATTTTTCGAACATGCCATGCTCGGAAAAT-CCATAATTTGGTCTAAATAGT
14597704 TTGTCATTTTGTAAACAAGTTTTGGCATTT-AATTAAAAACTTATTTACGTGAGAATTGTATCTC
518 TTGTCATTTTGT-AACAAGTTTTGGCATTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTC
*
14597768 CTT-GTTGTTGGACGAACTTTCAAACTTGTCAAACTTTCAGGAGTTCTTTTATAACTTAGGTTCC
582 CTTGGTTGTTGGACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCC
*
14597832 TTAAAGCATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAAACATACCATGCTCGAGAAATCA
647 TTAAAGAATTCAAGATGATCCATTCCTTTGAGCAAATTTCC-AACATACCATGCTCGAGAAATCA
* *
14597897 CATCATTTGGTGAAAATAATTTGTCATTTTGTAAACAAGTTTT-GGACTGTGAATTAATAACTTA
711 CATCATTTGGTCAAAATAATTTGTCATTTTGTAAACAAGTTTTGGGACTGTGAAATAATAACTTA
14597961 G-TTACGTGAGAATTGTTTCTCTCTTAG-TCTTGGACGAACTT-C-AACTTGTCAAAAACTTATT
776 GTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATT
*
14598022 TACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACTTCCAAACTTG
841 TACGTGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
*
14598070 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGATGAACATCCGAACTTCTGA
1 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAT-AACATCCGAACTTCTGA
14598135 AACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAATGTCCAAGATGATCCATTCTTTCGAC
65 AACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAATGTCCAAGATGATCCATTCTTTCGAC
* *
14598200 CAATTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTATATAGTTTGTC-TTTTG
130 AAATTTTTT-GAACAT-CCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTG
*
14598264 TAAACAAGTTTCGGTCCTTGAATT-AAACCTTATTT-ACGTCGCAATTGGTTCTCTCTTGGTTCT
193 TAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTGACG-CGCAATTGGTTCTCTCTTGG-TCT
* * * *
14598327 TGGACGAACTTTCGAACCTGTCAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGG
256 TGAACGAACTTTCGAACCTGTAAAAGA-TTATTTACACGAGTACTATTTCACTCTTGGTTCTTGG
*
14598392 ATTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
320 ATGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG
* * * *
14598457 ACTTCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCTAGTT
385 ACATCCGAACTAGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGTT
** * * * *
14598522 AATCGTTTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGGAAACTCCTTCATTTGGTCTAAAT
450 AATCCATTCCTTCTAGAAATTTTTCGAACATGCCATGCTCGGAAAATCCATAATTTGGTCTAAAT
* *
14598587 AGTTTGTCATTTTGTAACATGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATTGTATC
515 AGTTTGTCATTTTGTAACAAGTTTTGGCATTTAAATTAAAAACTTATTTACGTGAGAATTGTATC
* * * *
14598652 TCCTTGGTTGTTGGATGAACTTTCGAACTTGTCAAACTTTCACGAGTTTTTTTATAATTTAGGTT
580 TCCTTGGTTGTTGGACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTT
*
14598717 CCTTAAAGAATTCAAGATGATCCTTTCCTTTGAGCAAATTTCCAACATACCATGCTCGAGAAATC
645 CCTTAAAGAATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAACATACCATGCTCGAGAAATC
* *
14598782 ACGTCATTTGGTCAAAATAGTTTGTCATTTTGTAAACAAGTTTTGGGACTGTGAAATAATAACTT
710 ACATCATTTGGTCAAAATAATTTGTCATTTTGTAAACAAGTTTTGGGACTGTGAAATAATAACTT
14598847 AGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
775 AGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
14598912 TTACGTGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
840 TTACGTGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
* * *
14598961 TCAAAAACTTATTTACGTGAGAATTGTTTCCCCTCTTGGTTCTTGGACAAACTTCCGAACTT
1 TCAAAAACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGA-TAACATCCGAACTT
14599023 GTCAAAAACT
Statistics
Matches: 884, Mismatches: 49, Indels: 30
0.92 0.05 0.03
Matches are distributed among these distances:
881 1 0.00
882 58 0.07
883 101 0.11
884 61 0.07
885 197 0.22
886 158 0.18
887 146 0.17
888 26 0.03
889 14 0.02
890 13 0.01
891 82 0.09
892 27 0.03
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (888 bp):
TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATAACATCCGAACTTCTGAA
ACTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAATGTCCAAGATGATCCATTCTTTCGACA
AATTTTTTGAACATCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTGACGCGCAATTGGTTCTCTCTTGGTCTTGAAC
GAACTTTCGAACCTGTAAAAGATTATTTACACGAGTACTATTTCACTCTTGGTTCTTGGATGAAC
TTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGACATCC
GAACTAGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGTTAATCCA
TTCCTTCTAGAAATTTTTCGAACATGCCATGCTCGGAAAATCCATAATTTGGTCTAAATAGTTTG
TCATTTTGTAACAAGTTTTGGCATTTAAATTAAAAACTTATTTACGTGAGAATTGTATCTCCTTG
GTTGTTGGACGAACTTTCAAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAA
AGAATTCAAGATGATCCATTCCTTTGAGCAAATTTCCAACATACCATGCTCGAGAAATCACATCA
TTTGGTCAAAATAATTTGTCATTTTGTAAACAAGTTTTGGGACTGTGAAATAATAACTTAGTTTA
CGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGT
GAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
Found at i:14598383 original size:62 final size:62
Alignment explanation
Indices: 14598316--14598474 Score: 221
Period size: 62 Copynumber: 2.6 Consensus size: 62
14598306 AATTGGTTCT
* * * * *
14598316 CTCTTGGTTCTTGGACGAACTTTCGAACCTGTCAAAGACTTATTTACATGAGTACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
** * * *
14598378 CTCTTGGTTCTTGGATTAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
14598440 CTCTTGGTTCTTGGACG-ACTTCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14598475 CTTTTACGAT
Statistics
Matches: 85, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
61 18 0.21
62 67 0.79
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAGAACTGTTTCA
Found at i:14598791 original size:213 final size:215
Alignment explanation
Indices: 14598411--14598904 Score: 628
Period size: 213 Copynumber: 2.3 Consensus size: 215
14598401 CGAACTTGTC
*
14598411 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACG-ACTTCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
14598475 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCTAGTTAATCGTTTCCTTCTAGAA
66 CTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCTTTCCTTCTAGAA
* * * *
14598540 ATTTTTCGAACATTCCATGCTCGGAAACTCCTTCATTTGGTCTAAATAGTTTGTCATTTTGT-AA
131 A-TTTTCCAACATACCATGCTCGGAAACTCCGTCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
* * *
14598604 CATGTTTT-GGCCT-TTAAATT
195 CAAGTTTTGGGACTGTGAAA-T
* * * *
14598624 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* ** *
14598688 CTTTCACGAGTTT-TTTTATAATTTAGGTTCCTTAAAGAATTCAAGATGATCCTTTCCTT-TGAG
66 CTTTCACGA-TTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCTTTCCTTCT-AG
14598751 CAAA-TTTCCAACATACCATGCTCGAGAAA-TCACGTCATTTGGTCAAAATAGTTTGTCATTTTG
129 -AAATTTTCCAACATACCATGCTCG-GAAACTC-CGTCATTTGGTCAAAATAGTTTGTCATTTTG
14598814 TAAACAAGTTTTGGGACTGTGAAAT
191 TAAACAAGTTTTGGGACTGTGAAAT
* * *
14598839 AATAACTTAGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAA
1 AAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAA
14598904 A
65 A
14598905 AACTTATTTA
Statistics
Matches: 241, Mismatches: 29, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
212 34 0.14
213 126 0.52
214 15 0.06
215 13 0.05
216 24 0.10
217 29 0.12
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGATTTCTTTTATAACTTAGGTTCCAAAAAGAATTCAAGATAATCCTTTCCTTCTAGAA
ATTTTCCAACATACCATGCTCGGAAACTCCGTCATTTGGTCAAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGGACTGTGAAAT
Found at i:14599029 original size:63 final size:62
Alignment explanation
Indices: 14598842--14599072 Score: 369
Period size: 61 Copynumber: 3.7 Consensus size: 62
14598832 GTGAAATAAT
*
14598842 AACTTAGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14598905 AACTTATTTACGTGAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14598966 AACTTATTTACGTGAGAATTGTTTCCCCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTT-CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14599029 AAC-TATTTACGTGAGAA-TGTTTTTCTCTTGGATCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
14599073 ATTCGAACTT
Statistics
Matches: 158, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
60 18 0.11
61 65 0.41
62 31 0.20
63 44 0.28
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14599082 original size:123 final size:124
Alignment explanation
Indices: 14598842--14599072 Score: 376
Period size: 123 Copynumber: 1.9 Consensus size: 124
14598832 GTGAAATAAT
* *
14598842 AACTTAGTTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAA
1 AACTTAGTTTACGTGAGAATTGTTTCCCTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAAA
* *
14598907 CTTATTTACGTGAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 CTTATTTACGTGAGAATGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAA
* *
14598966 AACTTA-TTTACGTGAGAATTGTTTCCCCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAA
1 AACTTAGTTTACGTGAGAATTGTTT-CCCTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAA
*
14599030 AC-TATTTACGTGAGAATGTTTTTCTCTTGGATCTTGGACGAAC
65 ACTTATTTACGTGAGAATGTTTCTCTCTTGGATCTTGGACGAAC
14599073 ATTCGAACTT
Statistics
Matches: 99, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
123 56 0.57
124 43 0.43
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (124 bp):
AACTTAGTTTACGTGAGAATTGTTTCCCTCTTAGTTCTTGGACAAACTTCCAAACTTGTCAAAAA
CTTATTTACGTGAGAATGTTTCTCTCTTGGATCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14599347 original size:63 final size:62
Alignment explanation
Indices: 14599238--14599422 Score: 232
Period size: 62 Copynumber: 3.0 Consensus size: 62
14599228 TCCTTGAATT
* * *
14599238 AAAACCTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTAGACGAACTTCCCAAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CCAAACTTGTC
* * * * *
14599301 AAAAGCTTATTTACGTGAGAAATT-TTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14599363 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC-AACTTGT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
14599423 GAAACTTTTA
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
61 11 0.10
62 51 0.48
63 39 0.37
64 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14599682 original size:339 final size:333
Alignment explanation
Indices: 14598902--14600980 Score: 1304
Period size: 339 Copynumber: 6.2 Consensus size: 333
14598892 CAAACTTGTC
14598902 AAAAACTTATTTACGT-GAGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGGA-ATTG-TTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
* * *
14598966 AACTTATTTACGTGAGAATTGTTTCCCCTCTTGGTTCTTGGACAAACTTCCGAACTTGTCAAAAA
63 AACTTATTTACGTGAGAAATGTTT-CACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* * *
14599031 C-TATTTACGTGAGAA-TGTTTTTCTCTTGGATCTTGGACGAACATTCGAACTTTTGAAACTTTT
127 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACA-TC-AACTTCTGAAACTTTT
* ** * *
14599094 ACGATTTCTTTTTAAC-TCCTTTCCTGAAAGTA-TCCAGATGATCCATTCTTTCGA-CCAGTTTT
190 ACGATTTC-TTTAAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAGTTTT
* * * * * * *
14599156 TCGAACATCCCCTGCTCGGGAAATCGCATAAATTGGTCTAAATAGATTGTCTTTTTCTAAAAAAG
254 TCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAG
*
14599221 TTTTCGGTCCTTGAATT
318 -TTTCGGTCCTTAAATT
* *
14599238 AAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTAGACGAACTTCCCAAACTTGTCAA
1 AAAAACTTATTTACGTGG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTT-CCAAACTTGTCAA
* * * * *
14599303 AAGCTTATTTACGTGAGAAATTTTTCTCTCTCGATTCTTGGACGAACTTTCGAACTTGTCAAAAA
63 AA-CTTATTTACGTGAGAAATGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* *
14599368 CTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAACTTGTGAAACTTTTA
127 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-CAACTTCTGAAACTTTTA
*
14599433 CGATTTCTTATAAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTT
191 CGATTTCTT-TAAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAGTTTTT
*
14599498 CGAACATTCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGTTTGTCTTTCTGTAAACAAGT
255 CGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTT-TGTAAACAAGT
14599563 TTCGGTCCTTAAATT
319 TTCGGTCCTTAAATT
***
14599578 AAAAACTTATTTACGTGGCAATTGTTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTCAAAG
1 AAAAACTTATTTACGTGG-AATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA-
* * * *
14599643 ACTTTATGTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
64 AC-TTATTTACGTGAGAAATGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
* *
14599708 TTATTTACGTAAGAATTGTTTTCTCTCTTGGTTCTTGGACGAAC-T---CTTCCG-AAC--TT--
128 TTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACGAACATCAACTTCTGAAACTTTTAC
* ** * * * * *
14599764 G----C--CAAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAAGTTTTTCG
192 GATTTCTTTAAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAGTTTTTCG
* * * *
14599823 AACATTCCATGCTC-AGAAAATCCCTTCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTT
257 AACATTCCATGCTCGAG-AAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAGTT
*
14599887 TTGG-CCTTTAAATT
320 TCGGTCC-TTAAATT
* * * ***
14599901 AAAAACTTATTTACGTGAGATTTATATCTC-CTTGGTTGTTGGACGAACTTTTGAACTTGTC-AA
1 AAAAACTTATTTACGTG-GAATTGT-TCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *** * * * * * *
14599964 GC-T-TTCAC--GAGTTCTTTTATAACT-TAGGTTCCCT--ACAGTA-TT-CAAGAC--GATC--
64 ACTTATTTACGTGAGAAATGTT-TCACTCTTGGTT-CTTGGAC-GAACTTCCGA-ACTTG-TCAA
* ** * * *** * * * ** *
14600016 -CA-TTCCTT---TGAGCAAAT-TTCCAAACAT--TCCATGCCCGAGAAATCACATCATT-TGGT
124 AAACTTATTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGA-ACATCA-A-C-TTCT-G-
* *** * * * * *
14600072 CAAAATAGTTTGTTATTT-TGTAAACAAGATTTGG-ACTGTGAATTAATAACTT--AGTTACGTG
182 -AAACT--TTTACGATTTCTTTAAAC----TTCGGTTC-CTGAA--AGT-A-TTCAAG--A--TG
** * *** * * * * * ** *
14600133 A-GAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTCGAAACTTG-TCAAAAACTTATTTACGTG
231 ATCCATTCTTTCGAGC-AAGTT-TT--TCGAACATTC----CATGCTCGAGAA---A-TCGCAT-
* * * * * * ** * *
14600195 AGAGTTGTTTCT--ATA-TTGGT-TCTTGGACGAAC-A---TCCGAACTT--GTC
283 A-ATTTG-GTCTAAATAGTTTGTCTTTTGTA--AACAAGTTTCGGTCCTTAAATT
*
14600240 AAAAACTTATTTACATGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTG-GAATTGTT-CTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
* * * *
14600305 AACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTT-GACTAACATCCGAACTTGTCAAAAAC
63 AACTTATTTACGTGAGAAATGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAAC
*
14600369 TT-TTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACATCCGAACTTCTGAAAC-TTT-
128 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT-C-AACTTCTGAAACTTTTA
* *
14600430 CGATTTCTTTTATAACTTCGGTTCCTG-AAGTATCCAAGATGATCCATTCTTTCGACCAA-TTTT
191 CGATTTC-TTTA-AACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAGTTTT
* * *
14600493 TCGAACATCCCATGCTCGGGAAATCACATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
254 TCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAACAAG
*
14600558 TTTCGGTCCTTGAATT
318 TTTCGGTCCTTAAATT
* * * *
14600574 AAAAACTTATTTTATGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTAGTCAA
1 AAAAACTTA-TTTACGTGG-AATT-GTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
** * * * *
14600639 AGACTTATTTACACGAGCACTGTTTCACTCTTGGTTCTTTGTCGAACTTCCGAACTTGTCAAAAA
63 A-ACTTATTTACGTGAGAAATGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
* * * *
14600704 CTTATTTACGTAAGAATTG-TTCTTCCTCTTGCTTCTTTGGACG-ACATCCGAACTTGTCAAACT
127 CTTATTTACGTGAGAATTGTTTC-T-CTCTTGGTTC-TTGGACGAACAT-C-AACTTCTGAAACT
** * * * * *
14600767 TTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAG-AAA
187 TTTACGATTTC-TTTA-AACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAG
* * * * *
14600831 TTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTTGGTCTAAATAGTTTTTCATTTTCTAAA
250 TTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAA
* *
14600896 TAAGTTTTGG-CCTTTAAATT
314 CAAGTTTCGGTCC-TTAAATT
* * * * * * * *
14600916 AAAATCTTACTTACGTGAGAACTGTATGTC-CTTGGTTGTTGGATGAACTTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTG-GAATTGT-TCTCTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCAA
14600980 A
63 A
14600981 CTTTCACGAG
Statistics
Matches: 1357, Mismatches: 238, Indels: 291
0.72 0.13 0.15
Matches are distributed among these distances:
304 7 0.01
305 1 0.00
306 6 0.00
307 3 0.00
308 3 0.00
310 4 0.00
311 2 0.00
312 3 0.00
313 1 0.00
314 4 0.00
315 8 0.01
316 15 0.01
317 6 0.00
318 3 0.00
319 3 0.00
321 1 0.00
322 6 0.00
323 161 0.12
324 8 0.01
325 3 0.00
326 9 0.01
327 4 0.00
328 11 0.01
329 3 0.00
330 12 0.01
331 3 0.00
332 16 0.01
333 1 0.00
334 24 0.02
335 88 0.06
336 54 0.04
337 90 0.07
338 97 0.07
339 199 0.15
340 142 0.10
341 124 0.09
342 115 0.08
343 6 0.00
344 7 0.01
345 22 0.02
346 25 0.02
347 11 0.01
348 6 0.00
349 3 0.00
350 6 0.00
351 2 0.00
352 7 0.01
353 13 0.01
354 8 0.01
355 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.38
Consensus pattern (333 bp):
AAAAACTTATTTACGTGGAATTGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAC
TTATTTACGTGAGAAATGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTA
TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCAACTTCTGAAACTTTTACGATT
TCTTTAAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAGTTTTTCGAACA
TTCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCGGTC
CTTAAATT
Found at i:14599736 original size:63 final size:61
Alignment explanation
Indices: 14599578--14599769 Score: 224
Period size: 63 Copynumber: 3.0 Consensus size: 61
14599568 TCCTTAAATT
* **
14599578 AAAAACTTATTTACGTGGCAATTG-TTCTCTCTTGGTTCTTGGACGAACTTTTGAACTTGTC
1 AAAAACTTATTTACGTAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * * * * *
14599639 AAAGACTTTATGTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAAC-TTATTTACGT-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
*
14599702 AAAAACTTATTTACGTAAGAATTGTTTTCTCTCTTGGTTCTTGGACGAACTCTTCCGAACTTGCC
1 AAAAACTTATTTACGT-AGAATTG-TTTCTCTCTTGGTTCTTGGACGAA--CTTCCGAACTTGTC
14599767 AAA
1 AAA
14599770 CTTCGGTTCC
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
61 5 0.05
62 24 0.22
63 63 0.58
65 16 0.15
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (61 bp):
AAAAACTTATTTACGTAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14600388 original size:60 final size:62
Alignment explanation
Indices: 14600119--14600419 Score: 448
Period size: 62 Copynumber: 4.9 Consensus size: 62
14600109 GTGAATTAAT
* * *
14600119 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAAC-TTCGAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCG-AACTTGTCAAA
* * *
14600181 AACTTATTTACGTGAGAGTTGTTTCTATATTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * *
14600243 AACTTATTTACATGAGAATTGTTCCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14600305 AACTTATTTACGTGAGAACTGTTTCTCTCTTGGTTCTT-GACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
*
14600366 AACTT-TTTACGTGAGAATTGTTTCTCTC-TGGTTCTTGGATGAACATCCGAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
14600420 CTGAAACTTT
Statistics
Matches: 215, Mismatches: 22, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
59 8 0.04
60 37 0.17
61 25 0.12
62 142 0.66
63 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
Found at i:14601152 original size:216 final size:216
Alignment explanation
Indices: 14600740--14601196 Score: 557
Period size: 216 Copynumber: 2.1 Consensus size: 216
14600730 TCTTGCTTCT
* * * * *
14600740 TTGGACG-ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTA
1 TTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTCGATTCCAAAAAGCA
** * *
14600804 TTCAAGTTAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATGCTCGAAAAATCCCATCATTT
66 TTCAAGACAATCCATTCCTTCTAGAAATTTTTCAAACATTCCATGCTCGAAAAATCACATCATTT
* * * * * *
14600869 GGTCTAAATAGTTTTTCATTTTCTAAATAAGTTTTGGCCTTTAAATTAAAATCTTACTTACGTGA
131 GGTCAAAATAGTTTGTCATTTTCAAAACAAGTTTTGGACTCTAAATTAAAATCTTACTTACGTGA
* * *
14600934 GAACTGTATGTC-CTTGGTTG
196 GAACTGTATCTCTCTTAGTTC
* * **
14600954 TTGGATGAACTTTTCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTCGATTCCTTAAAGC
1 TTGGACGAAC-TTCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTCGATTCCAAAAAGC
* *
14601019 ATTCAAGACGATCCATTCCTT-TGAGCAAA-TTTTCAAACATTCCATGCTCGAGAAATCACATCA
65 ATTCAAGACAATCCATTCCTTCT-AG-AAATTTTTCAAACATTCCATGCTCGAAAAATCACATCA
* *
14601082 TTTGGTCAAAATAGTTTGTCATTTTGAAAACAAGTTTTGGACTGCT-AATTAATAA-CTTAGTTA
128 TTTGGTCAAAATAGTTTGTCATTTTCAAAACAAGTTTTGGACT-CTAAATTAA-AATCTTACTTA
* * *
14601145 TGTGAGAATTGTTTCTCTCTTAGTTC
191 CGTGAGAACTGTATCTCTCTTAGTTC
*
14601171 TTGGACGAACTTCCAAACTTGTCAAA
1 TTGGACGAACTTCCGAACTTGTCAAA
14601197 ACTTATTTAC
Statistics
Matches: 204, Mismatches: 32, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
214 6 0.03
215 3 0.01
216 174 0.85
217 21 0.10
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (216 bp):
TTGGACGAACTTCCGAACTTGTCAAACTTTCACGAGTTCTTTTATAACTTCGATTCCAAAAAGCA
TTCAAGACAATCCATTCCTTCTAGAAATTTTTCAAACATTCCATGCTCGAAAAATCACATCATTT
GGTCAAAATAGTTTGTCATTTTCAAAACAAGTTTTGGACTCTAAATTAAAATCTTACTTACGTGA
GAACTGTATCTCTCTTAGTTC
Found at i:14601288 original size:62 final size:62
Alignment explanation
Indices: 14601135--14601502 Score: 522
Period size: 62 Copynumber: 5.9 Consensus size: 62
14601125 GCTAATTAAT
* * *
14601135 AACTTAGTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTC-AA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14601196 AACTTATTTACGTGCGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14601258 AACTTATTTACGTGAGAATTTTTTCTCTCTTGTTTCTTGAACGAACTTCGAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14601320 AACTTATTTACATTAGAATTGTTTCTCTCGTGGTTCTTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
14601382 AACTTATCTACGTGAGTACTGTTTCACTCTTGGTTCTTGGGCGAAACTTCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCAAACTTGTCAAA
* * * *
14601445 AACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACAAACATCCGAACTTGT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGT
14601503 GAAACTTTTA
Statistics
Matches: 270, Mismatches: 35, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
61 55 0.20
62 162 0.60
63 53 0.20
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14601842 original size:61 final size:62
Alignment explanation
Indices: 14601678--14601845 Score: 194
Period size: 62 Copynumber: 2.7 Consensus size: 62
14601668 TTACATGGCA
* * ** *
14601678 ACTGGTTCTCTCTTTGTTCTTGGACGAACTTTCAAACTTGTCAAAGGCTCATGTACATGAGT
1 ACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTCATGTACATAAGT
* * * * * *
14601740 ACTGTTTCACTCTTGGTTCATGGACGAACTTTCAAAATTGTCAAAAACTTATTTACGTAAG-
1 ACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTCATGTACATAAGT
* * * *
14601801 ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 ACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
14601846 CTTTTACGAT
Statistics
Matches: 88, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
61 38 0.43
62 50 0.57
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (62 bp):
ACTGTTTCTCTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTCATGTACATAAGT
Found at i:14602037 original size:338 final size:340
Alignment explanation
Indices: 14601317--14602106 Score: 1111
Period size: 338 Copynumber: 2.3 Consensus size: 340
14601307 GAAACTTGTC
* * *
14601317 AAAAACTTATTTACATTAGAATTGTTTCTCTCGTGGTTCTTGGACGAACTTCCAAACTTGTTAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14601382 AACTTATCTACGTGAGTACTGTTTCACTCTTGGTTCTTGGGCGAAACTTCCGAACTTGTCAAAAA
66 AACTTATCTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG-AACTTCCAAAATTGTCAAAAA
* * *
14601447 CTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACAAACATCCGAACTTGTGAAACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTT
** * * * * *
14601512 ACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGATGATGCATTCTTTCGAGCAATTTT
195 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTT
* * *
14601577 TCGAACATTCCATGCTCGGGAAATCGCATATTTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAG
260 TCGAACATTCCATGCTCGGAAAATCACATATTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAG
* *
14601642 TTTCGGTCTTTGAATT
325 TTTCGGCCTTTAAATT
* * * *
14601658 AAAAACTTATTTACATG-GCAACTGGTTCTCTCTTTGTTCTTGGACGAACTTTCAAACTTGTCAA
1 AAAAACTTATTTACATGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
** * * * *
14601722 AGGCTCATGTACATGAGTACTGTTTCACTCTTGGTTCATGGACGAACTTTCAAAATTGTCAAAAA
65 AAACTTATCTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAAATTGTCAAAAA
*
14601787 CTTATTTACGTAAG-ATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
130 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTT
* *
14601851 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCCATTCCTTCTAG-AAATTT
195 ACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTT
*
14601915 TCGAACATTCCATGCTCGGAAAATCACATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACTA
260 TCGAACATTCCATGCTCGGAAAATCACAT-ATTTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
*
14601979 GTTTTGGCCTTTAAATT
324 GTTTCGGCCTTTAAATT
* * *
14601996 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * * *
14602061 AACTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTGGAAGAAC
66 AACTTATCTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAAC
14602107 ATCCGAACTT
Statistics
Matches: 392, Mismatches: 54, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
338 169 0.43
339 99 0.25
340 32 0.08
341 92 0.23
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (340 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AACTTATCTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAAATTGTCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAAATTTT
CGAACATTCCATGCTCGGAAAATCACATATTTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
TTCGGCCTTTAAATT
Found at i:14602093 original size:62 final size:62
Alignment explanation
Indices: 14601996--14602116 Score: 206
Period size: 62 Copynumber: 2.0 Consensus size: 62
14601986 CCTTTAAATT
* **
14601996 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAAATGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
*
14602058 AAAAACTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTT
1 AAAAACTTATTTACATGAGAAATGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTT
14602117 CTGAAACTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAAATGTTTCTCTCTTGGTTCTTGGAAGAACATCCGAACTTGTC
Found at i:14602425 original size:62 final size:62
Alignment explanation
Indices: 14602275--14602463 Score: 207
Period size: 62 Copynumber: 3.0 Consensus size: 62
14602265 CCTTGAATTG
* *** * * *
14602275 AAAACTTATTTACCTGGCAATTGGTTCACTCTTGGTTCTTGGACGAACTTTCAAAACTTGTTA
1 AAAACTTATTTACATAAAAATTGTTTCACTCTTGGTTCTTGGACGAAC-TTCCAAACTTGTCA
* * ** * *
14602338 AAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAGCTTCCAAACTTGTCA
1 AAAACTTATTTACATAAAAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
* * * * *
14602400 AAAATTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCA
1 AAAACTTATTTACATAAAAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
14602462 AA
1 AA
14602464 CTTTTACGAT
Statistics
Matches: 105, Mismatches: 21, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
62 65 0.62
63 40 0.38
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAACTTATTTACATAAAAATTGTTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
Found at i:14602670 original size:616 final size:616
Alignment explanation
Indices: 14601377--14602676 Score: 2075
Period size: 616 Copynumber: 2.1 Consensus size: 616
14601367 TCCAAACTTG
* * * * *
14601377 TTAAAAACTTATCTACGTGAGTACTGTTTCACTCTTGGTTCTTGGGCGAAACTTCCGAACTTGTC
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCCGAACTTGTC
* * *
14601442 AAAAACTTATTTACGTGAGAATTGTTTTTCTCTTGGTTCTTGGACAAACATCCGAACTTGTGAAA
65 AAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTCTGAAA
* * * *
14601507 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATTCATGATGATGCATTCTTTCGAGCA
130 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCA
* * *
14601572 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATATTTTGGTCTAAATAGTTTGTCTTTTTGTAA
195 ATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * *
14601637 ACAAGTTTCGGTCTTTGAATTAAAAACTTATTTACATGGCAACTGGTTCTCTCTTTGTTCTTGGA
260 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACATGGCAACTGGTTCACTCTTGGTTCTTGGA
*
14601702 CGAACTTTCAAACTTGTCAAAGGCTCATGTACATGAGTACTGTTTCACTCTTGGTTCATGGACGA
325 CGAACTTTCAAACTTGTCAAAGACTCATGTACATGAGTACTGTTTCACTCTTGGTTCATGGACGA
* *
14601767 ACTTTCAAAATTGTCAAAAACTTATTTACGTAAGATTGTTTCTCTCTTGGTTCTTGGACGAACAT
390 ACTTCCAAAATTGTCAAAAACTTATTTACGTAAAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
* *
14601832 CCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGTTAATC
455 CCGAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCAAAAAGTATTCAAGTTAATC
*
14601897 CATTCCTTCTAGAAATTTTCGAACATTCCATGCTCGGAAAATCACATCATTTGGTCTAAATAGTT
520 CATTCCTTCTAGAAATTTTCGAACATTCAATGCTCGGAAAATCACATCATTTGGTCTAAATAGTT
* *
14601962 TGTCATTTTGTAAACTAGTTTTGGCCTTTAAA
585 TGCCATTTTGTAAACAAGTTTTGGCCTTTAAA
* * *
14601994 TTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
*
14602059 AAAACTTATTTACTTGAGAAATGTTTCTCTCTTGGTTCTTGGA-AGAACATCCGAACTTCTGAAA
66 AAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACA-AACATCCGAACTTCTGAAA
* *
14602123 CTTTTACGATTTCTTTTATATCTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTTGACCA
130 CTTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCA
* * *
14602188 ATTTTTCGGACATCCCATTCTCGAGAAATCGCATAATTTGGTCTAAATGGTTTGTCTTTTTGTAA
195 ATTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAA
* * * *
14602253 ACAAGTTTTGGTCCTTGAATTGAAAACTTATTTACCTGGCAATTGGTTCACTCTTGGTTCTTGGA
260 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACATGGCAACTGGTTCACTCTTGGTTCTTGGA
* * * *
14602318 CGAACTTTCAAAACTTGTTAAAGACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACG
325 CGAACTTTC-AAACTTGTCAAAGACTCATGTACATGAGTACTGTTTCACTCTTGGTTCATGGACG
* * *
14602383 AGCTTCCAAACTTGTCAAAAATTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
389 AACTTCCAAAATTGTCAAAAACTTATTTACGT-AAAATTGTTTCTCTCTTGGTTCTTGGACGAAC
*
14602448 ATCCGAACTTGTCAAACTTTTACGATTTCCTTCATAGCTTCGGTTCC-AAAAGTATTCAAGTTAA
453 ATCCGAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCAAAAAGTATTCAAGTTAA
* *
14602512 TCCATTCCTTCTAGAATTTTTCGAACATTCAATGCTCGGAAAATCCCATCATTTGGTCTAAATAG
518 TCCATTCCTTCTAGAAATTTTCGAACATTCAATGCTCGGAAAATCACATCATTTGGTCTAAATAG
14602577 TTTGCCATTTTGTAAACAAGTTTTGGCCTTTAAA
583 TTTGCCATTTTGTAAACAAGTTTTGGCCTTTAAA
* * *
14602611 TTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
14602675 AA
66 AA
14602677 CTTTCACGAG
Statistics
Matches: 625, Mismatches: 55, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
615 1 0.00
616 289 0.46
617 260 0.42
618 75 0.12
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.39
Consensus pattern (616 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCA
AAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACAAACATCCGAACTTCTGAAAC
TTTTACGATTTCTTTTATAACTTCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAA
TTTTTCGAACATCCCATGCTCGAGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTTGTAAA
CAAGTTTCGGTCCTTGAATTAAAAACTTATTTACATGGCAACTGGTTCACTCTTGGTTCTTGGAC
GAACTTTCAAACTTGTCAAAGACTCATGTACATGAGTACTGTTTCACTCTTGGTTCATGGACGAA
CTTCCAAAATTGTCAAAAACTTATTTACGTAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATC
CGAACTTGTCAAACTTTTACGATTTCCTTCATAACTTCGGTTCCAAAAAGTATTCAAGTTAATCC
ATTCCTTCTAGAAATTTTCGAACATTCAATGCTCGGAAAATCACATCATTTGGTCTAAATAGTTT
GCCATTTTGTAAACAAGTTTTGGCCTTTAAA
Found at i:14602781 original size:214 final size:214
Alignment explanation
Indices: 14602399--14602891 Score: 577
Period size: 214 Copynumber: 2.3 Consensus size: 214
14602389 CAAACTTGTC
* * * *
14602399 AAAAATTTATTTACGTAAAAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * * ** *
14602464 CTTTTACGATTTCCTTCATAGCTTCGGTTCCAAAAGTATTCAAGTTAATCCATTCCTTCTAGAAT
66 CTTTCACGAGTTCCTTCATAACTTAGGTTCCAAAAGTATTCAAGACAATCCACTCCTTCTAGAAT
* * * * * *
14602529 TTTTCGAACATTCAATGCTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGCCATTTTGTAAAC
131 ATTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAAA
*
14602594 AAGTTTTGGCCT-TTAAATT
196 AAGTTTTGGACTGTT-AATT
* * *
14602613 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14602677 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAA-TCA-TCTAAGACGATCCACTCCTT-TGA
66 CTTTCACGAGTTCCTTCATAACTTAGGTTCC-AAAAGT-ATTC-AAGACAATCCACTCCTTCT-A
* *
14602739 GCAA-ATTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTT
127 G-AATATTCCAAACATTCAATGCTCGGA-AAATCACATCATTTGGTCAAAATAGTTTGCCATTTT
14602802 GTAAAAAAGTTTTGGACTGTTAATT
190 GTAAAAAAGTTTTGGACTGTTAATT
* * * * * *
14602827 AATAACTTAGTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14602892 AACTTATTTA
Statistics
Matches: 235, Mismatches: 36, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
213 62 0.26
214 140 0.60
215 33 0.14
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (214 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCCTTCATAACTTAGGTTCCAAAAGTATTCAAGACAATCCACTCCTTCTAGAAT
ATTCCAAACATTCAATGCTCGGAAAATCACATCATTTGGTCAAAATAGTTTGCCATTTTGTAAAA
AAGTTTTGGACTGTTAATT
Found at i:14602815 original size:21 final size:21
Alignment explanation
Indices: 14602774--14602813 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14602764 AGAAATCACA
*
14602774 TCATTTGGTCAAAATAGTTTG
1 TCATTTGGTCAAAAAAGTTTG
*
14602795 TCATTTTGT-AAAAAAGTTT
1 TCATTTGGTCAAAAAAGTTT
14602814 TGGACTGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (21 bp):
TCATTTGGTCAAAAAAGTTTG
Found at i:14603012 original size:121 final size:123
Alignment explanation
Indices: 14602830--14603058 Score: 354
Period size: 121 Copynumber: 1.9 Consensus size: 123
14602820 GTTAATTAAT
*
14602830 AACTTAGTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
14602895 TTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAA
66 TTATTTACGTGAAAAATGTTTCTCTCTTGGATCTTGGACGAACTTCCAACTTGTCAAA
* * * * * *
14602953 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAAATC
1 AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
14603016 TTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAAC
66 TTATTTACGTGAAAAATGTTTCTCTCTTGGATCTTGGACGAAC
14603059 GTCTGAACTT
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
121 75 0.78
122 2 0.02
123 19 0.20
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (123 bp):
AACTTAGTTACGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAAAAATGTTTCTCTCTTGGATCTTGGACGAACTTCCAACTTGTCAAA
Found at i:14603029 original size:60 final size:62
Alignment explanation
Indices: 14602830--14603058 Score: 347
Period size: 62 Copynumber: 3.7 Consensus size: 62
14602820 GTTAATTAAT
* * * *
14602830 AACTTAGTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14602892 AACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14602953 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* *
14603013 ATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
14603059 GTCTGAACTT
Statistics
Matches: 151, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
59 24 0.16
60 32 0.21
61 32 0.21
62 63 0.42
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14603326 original size:61 final size:60
Alignment explanation
Indices: 14603225--14603404 Score: 229
Period size: 61 Copynumber: 2.9 Consensus size: 60
14603215 TCCTTGAATT
** *
14603225 AAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
1 AAAA-CTTATTTACGTGG-AATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14603287 AAAAGCTTATTTACGTGAGAATT-TTTCTCTCTCGGTTCTTGGACGAACTTTCGAACTTGTC
1 AAAA-CTTATTTACGTG-GAATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTC
*
14603348 AATAACTTATTTACGTGGGAATTATTTCTCTC-CTGGTTCTTGGACGAACATCCAAAC
1 AA-AACTTATTTACGT-GGAATTATTTCTCTCTC-GGTTCTTGGACGAACTTCCAAAC
14603405 CTGTGAAACT
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
61 53 0.50
62 51 0.49
63 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.37
Consensus pattern (60 bp):
AAAACTTATTTACGTGGAATTATTTCTCTCTCGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14603357 original size:398 final size:398
Alignment explanation
Indices: 14602613--14603404 Score: 1010
Period size: 398 Copynumber: 2.0 Consensus size: 398
14602603 CCTTTAAATT
* * * *
14602613 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGATCTTGGACGAACTCTCGAACTTCTCAAAC
* * * *
14602678 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAATCATCTAAGACGATCCACTCCTTTGAGCAA
66 TTTCACGAGTTCTTTTATAACTCAGGTTCCTGAAATCATCCAAGACGATCCACTCCTTTGACCAA
* * * *
14602743 ATTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAAA
131 ATTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTGTCATTTTCTAAAA
* * * *
14602808 AAGTTTTGGACTGTTAATTAATAACTTAGTTATGTGAGAATTGTTTCTCTCTTAGCTCTTGGACG
196 AAGTTTCGGACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGCTCTTGGACG
*
14602873 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAAC
261 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTCGGTTCTTGGACGAAC
* * *
14602938 TTCCAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCT-TGGTTCTTGGATGAACTTCCA
326 TTCCAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTGGTTCTTGGACGAACATCCA
14603002 AACTTTTC
391 AACTTTTC
* * *
14603010 AAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACGTCT-GAACTTCTGAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGATCTTGGACGAAC-TCTCGAACTTCTCAA
* * * *
14603074 ACTTT-ACGA-TTTTTTTATAACTCCGGTTCCTGAAAGT-ATCCAAGATGATCCA-TTCTTTCGA
64 ACTTTCACGAGTTCTTTTATAACTCAGGTTCCTGAAA-TCATCCAAGACGATCCACTCCTTT-GA
** * * * * * *
14603135 CCAGTTTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGATTGTCTTTTT
127 CCA--AATTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTGTCATTTT
* * * *
14603200 CTAAAAAAGTTTCGGTCCT-TGAATTAA-AACCTTATTTACGTG-GCAATTGGTTCTCTCTTGGT
190 CTAAAAAAGTTTCGG-ACTGTGAATTAATAA-CTTAGTTACGTGAG-AATTGGTTCTCTCTTAGC
* * *
14603262 TCTTGGACGAACTTCCAAACTTGTCAAAAGCTTATTTACGTG-AGAATTTTTCTCTCTCGGTTCT
252 TCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTCGGTTCT
* * *
14603326 TGGACGAACTTTCGAACTTGTCAATAACTTATTTACGTGGGAATTATTTCTCTCCTGGTTCTTGG
317 TGGACGAAC-TTCCAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCT-CTGGTTCTTGG
14603391 ACGAACATCCAAAC
380 ACGAACATCCAAAC
14603405 CTGTGAAACT
Statistics
Matches: 338, Mismatches: 45, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
395 5 0.01
396 39 0.12
397 64 0.19
398 204 0.60
399 4 0.01
400 22 0.07
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (398 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGATCTTGGACGAACTCTCGAACTTCTCAAAC
TTTCACGAGTTCTTTTATAACTCAGGTTCCTGAAATCATCCAAGACGATCCACTCCTTTGACCAA
ATTCCAAACATCCCATGCTCGAGAAATCACATAATTTGGTCAAAATAGATTGTCATTTTCTAAAA
AAGTTTCGGACTGTGAATTAATAACTTAGTTACGTGAGAATTGGTTCTCTCTTAGCTCTTGGACG
AACTTCCAAACTTGTCAAAAACTTATTTACGTGAAAAATGTTTCTCTCTCGGTTCTTGGACGAAC
TTCCAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTGGTTCTTGGACGAACATCCA
AACTTTTC
Found at i:14603535 original size:339 final size:334
Alignment explanation
Indices: 14602889--14603740 Score: 1150
Period size: 339 Copynumber: 2.5 Consensus size: 334
14602879 CAAACTTGTC
** * *
14602889 AAAAACTTATTTACGTGAAAAATGTTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAAA
* * * *
14602954 ACTTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGATGAACTTCCAAACTTTTCAAAATCTTA
66 GCTTATTTACGTGAGAATT-TTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA-CTTA
* * ** *
14603019 TTTACGTGAGAATTGTTTCTCTCTTGGATCTTGGACGAACGTCTGAACTTCTGAAACTTTACGAT
129 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTCTGAAACTTTACGAT
* * * *
14603084 TTTTTTATAACTCCGGTTCCTGAAAGTATCCAAGATGATCCATTCTTTCGACCAGTTTTTTCGAA
194 TTTTTTATAACTCCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTCCCACCAGATTTTTCGAA
* * *
14603149 CATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGATTGTCTTTTTCTAAAAAAGTTTCG
259 CATCCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGATTGTCTTTCTCTAAAAAAGTTTCG
14603214 GTCCTTGAATT
324 GTCCTTGAATT
*
14603225 AAAACCTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCC-AACTTGTCAAA
*
14603290 AGCTTATTTACGTGAGAATTTTTCTCTCTCGGTTCTTGGACGAACTTTCGAACTTGTCAATAACT
65 AGCTTATTTACGTGAGAATTTTTCTCT-T-GGTTCTTGGACGAACTTCCGAACTTGTCAA-AACT
* * * *
14603355 TATTTACGTGGGAATTATTTCTCTCCTGGTTCTTGGACGAACATCCAAACCTGTGAAACTTTTAC
127 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTCTGAAAC-TTTAC
* * *
14603420 GATTTCTTTTATAACTTCGGTTCCTAAAAGTATTCAAGATGATCCATTCTTCCCAGCA-ATTTTT
191 GATTT-TTTTATAACTCCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTCCCACCAGATTTTT
* * * * * *
14603484 CGAACATTCCATGCTCGAGAACTTGCATAATTTGGTATAAATAGTTTGTCTTTCTGTAAACAAGT
255 CGAACATCCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGATTGTCTTTCTCTAAAAAAGT
14603549 TTCGGTCCTTGAATT
320 TTCGGTCCTTGAATT
* * **
14603564 AAAAACTTATTTACGTGGCAATTGGTTCTCTTTTGGTTCTTGGATGAACTTTTGAACTTGTC-AA
1 AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAAC-TTCCAACTTGTCAAA
* * * * * *
14603628 AGACTTATGTACATGAGTACTGTTTCACTGTTGGTTCTTGGACGAAATTCCGAACTTGTCAAAAA
65 AG-CTTATTTACGTGAG-AAT-TTT-TCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC-AAAA
*
14603693 CTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
125 CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC
14603741 GAACTAGTCA
Statistics
Matches: 453, Mismatches: 51, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
336 55 0.12
337 31 0.07
338 82 0.18
339 154 0.34
340 122 0.27
341 6 0.01
342 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (334 bp):
AAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCCAACTTGTCAAAA
GCTTATTTACGTGAGAATTTTTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAACTTATT
TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACCTCTGAAACTTTACGATTT
TTTTATAACTCCGGTTCCTAAAAGTATCCAAGATGATCCATTCTTCCCACCAGATTTTTCGAACA
TCCCATGCTCGAGAAATCGCATAATTTGGTATAAATAGATTGTCTTTCTCTAAAAAAGTTTCGGT
CCTTGAATT
Found at i:14603666 original size:62 final size:62
Alignment explanation
Indices: 14603596--14603752 Score: 188
Period size: 62 Copynumber: 2.5 Consensus size: 62
14603586 TGGTTCTCTT
* ** * * * *
14603596 TTGGTTCTTGGATGAACTTTTGAACTTGTCAAAGACTTATGTACATGAGTACTGTTTCACTG
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATGTACATAAGAACTGTTTCACTC
* * * * *
14603658 TTGGTTCTTGGACGAAATTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTC
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATGTACATAAGAACTGTTTCACTC
* *
14603720 TTGGTTCTTGGACGAACATCCGAACTAGTCAAA
1 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14603753 CTTCAGGTCC
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 80 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (62 bp):
TTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATGTACATAAGAACTGTTTCACTC
Found at i:14604199 original size:62 final size:62
Alignment explanation
Indices: 14604101--14604401 Score: 430
Period size: 62 Copynumber: 4.9 Consensus size: 62
14604091 GTGAATTAAT
* * * *
14604101 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
14604163 AACTTATTTACGTGAGAGTTGTTTCTATATTGGTTCTTGGACGAACATCCGAAA-TTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCC-AAACTTGTCAAA
* * * *
14604225 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTTGACAAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
* * *
14604285 AACTTATTTACGTGAGACTT-TTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
14604346 AACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
14604402 CTGAAACTTT
Statistics
Matches: 210, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
59 3 0.01
60 48 0.23
61 52 0.25
62 104 0.50
63 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
Found at i:14604356 original size:121 final size:124
Alignment explanation
Indices: 14604101--14604401 Score: 464
Period size: 121 Copynumber: 2.5 Consensus size: 124
14604091 GTGAATTAAT
* * *
14604101 AACTTAGTTACATGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
*
14604166 TTATTTACGTGAGAGTTGTTTCTATATTGGTTCTTGGACGAACATCCGAAATTGTCAAA
66 TTATTTACGTGAGACTTGTTTCTATATTGGTTCTTGGACGAACATCCGAAATTGTCAAA
* * *
14604225 AACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTTGACAAACTTCCAAACTTGTTAAAAAC
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* * * *
14604288 TTATTTACGTGAGACTT-TTTCTCTCTTGGTTCTTGGACTAACATCCGAACTTGTCAAA
66 TTATTTACGTGAGACTTGTTTCTATATTGGTTCTTGGACGAACATCCGAAATTGTCAAA
* *
14604346 AACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTT
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
14604402 CTGAAACTTT
Statistics
Matches: 160, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
121 57 0.36
122 54 0.34
123 30 0.19
124 19 0.12
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (124 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
TTATTTACGTGAGACTTGTTTCTATATTGGTTCTTGGACGAACATCCGAAATTGTCAAA
Found at i:14604536 original size:461 final size:461
Alignment explanation
Indices: 14603883--14604722 Score: 1095
Period size: 460 Copynumber: 1.8 Consensus size: 461
14603873 CCTTTAAATT
* * *** * *
14603883 AAAAACTTAGTTACGTGAGAATTGTATCTCCTTGGTTGTTGGACGAACTTTTGAACTTGTCAAGC
1 AAAAACTTAGTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACATCCAAACTTCTCAAAC
* * *
14603948 TTTCACAAATTCTTTTATAACTTGGGTTCCCTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACAAATTCTTTTATAACTTCGGTTCCCTAAAGTATCCAAGACGATCCATTCCTTTGACCAA
* * *
14604013 ATTTCCAAACATTCCATGCTCGAGAAATCCCATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
131 ATTTCCAAACATCCCATGCTCGAGAAATCCCATAATTTGGTCAAAAGAGTTTGTCATTTTGTAAA
* * *
14604078 CAAGTTTTGG-ACTGTGAATTAATAACTTAGTTACATG-AG-AATTGTTTCTCTCTTAGTTCTTG
196 CAAGTTTCGGTACT-TGAA-TAAAAACTTA-TT-CATGTAGCAATTGGTTCTCTCTTAGTTCTTG
** ** *
14604140 GACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAG-AGTTGTTTCTA-TATTGGTTCTTGG
257 GACGAACTTCCAAACAAGTCAAAAACTTATTTACACGAGCA-CTGTTTC-ACTATTGGTTCTTGG
*
14604203 ACGAACATCCGAAATTGTCAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTTGACA
320 ACGAACATCCGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTTGACA
14604266 AACTTCCAAACTTGTTAAAAACTTATTTACGTGAGACTTTTTCTCTCTTGGTTCTTGGACTAACA
385 AACTTCCAAACTTGTTAAAAACTTATTTACGTGAGACTTTTTCTCTCTTGGTTCTTGGACTAACA
14604331 TCCGAACTTGTC
450 TCCGAACTTGTC
* * * *
14604343 AAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTCTGAAA
1 AAAAACTTAGTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACATCCAAACTTCTCAAA
* * * *
14604408 CTTTTACGATTTCTTTTATAACTTCGGTT-CCTGAAAGTATCCAAGATGATCCATT-CTTTCGAC
65 CTTTCACAAATTCTTTTATAACTTCGGTTCCCT-AAAGTATCCAAGACGATCCATTCCTTT-GAC
* * * * * * *
14604471 CAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAAGAGTTTGTCTTTTTGT
128 CAAATTTCCAAACATCCCATGCTCGAGAAATCCCATAATTTGGTCAAAAGAGTTTGTCATTTTGT
* * *
14604536 AAACAAGTTTCGGTCCTTGAATAAAAACTTATTCATGTGGCAATTGGTTCTCTCTTGGTTCTTGG
193 AAACAAGTTTCGGTACTTGAATAAAAACTTATTCATGTAGCAATTGGTTCTCTCTTAGTTCTTGG
* * * * * * *
14604601 ACGAACTTTCGAACAAGTGAAAGACTTATTTACACGAGCACTGTTTCACTCTTGGTTCTTTGTCG
258 ACGAACTTCCAAACAAGTCAAAAACTTATTTACACGAGCACTGTTTCACTATTGGTTCTTGGACG
* *
14604666 AACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT
323 AACATCCGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTT
14604723 GGACGACATC
Statistics
Matches: 321, Mismatches: 49, Indels: 18
0.83 0.13 0.05
Matches are distributed among these distances:
458 4 0.01
459 4 0.01
460 151 0.47
461 147 0.46
462 15 0.05
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (461 bp):
AAAAACTTAGTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACATCCAAACTTCTCAAAC
TTTCACAAATTCTTTTATAACTTCGGTTCCCTAAAGTATCCAAGACGATCCATTCCTTTGACCAA
ATTTCCAAACATCCCATGCTCGAGAAATCCCATAATTTGGTCAAAAGAGTTTGTCATTTTGTAAA
CAAGTTTCGGTACTTGAATAAAAACTTATTCATGTAGCAATTGGTTCTCTCTTAGTTCTTGGACG
AACTTCCAAACAAGTCAAAAACTTATTTACACGAGCACTGTTTCACTATTGGTTCTTGGACGAAC
ATCCGAAATTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTTGACAAACTTC
CAAACTTGTTAAAAACTTATTTACGTGAGACTTTTTCTCTCTTGGTTCTTGGACTAACATCCGAA
CTTGTC
Found at i:14604656 original size:62 final size:62
Alignment explanation
Indices: 14604587--14604737 Score: 169
Period size: 62 Copynumber: 2.5 Consensus size: 62
14604577 AATTGGTTCT
* * * * *
14604587 CTCTTGGTTCTTGGACGAACTTTCGAACAAGTGAAAGACTTATTTACACGAGCACTGTTTCA
1 CTCTTGGTTCTTGGACGAACTTCCGAACAAGTCAAAAACTTATTTACACAAGAACTGTTTCA
* * ** ** * *
14604649 CTCTTGGTTCTTTGTCGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCT
1 CTCTTGGTTCTTGGACGAACTTCCGAACAAGTCAAAAACTTATTTACACAAGAACTGTTTCA
*
14604711 CTCTTGGTTCTTGGACG-ACATCCGAAC
1 CTCTTGGTTCTTGGACGAACTTCCGAAC
14604738 TTGTCAAACT
Statistics
Matches: 73, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
61 9 0.12
62 64 0.88
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACTTCCGAACAAGTCAAAAACTTATTTACACAAGAACTGTTTCA
Found at i:14604984 original size:61 final size:63
Alignment explanation
Indices: 14604896--14605048 Score: 195
Period size: 61 Copynumber: 2.5 Consensus size: 63
14604886 TTCTCTCTTA
* * * * *
14604896 GTTCTTGGACGAACATTCAAACTTGTCAAAG-ACTTATTTACATAAGTATTATTTCACTCTTG
1 GTTCTTGGACAAACATCCGAACTTGTCAAAGAACTTATTTACATAAGAATTATTTCACTCATG
* ** *
14604958 GTT-TTGGACAAACTTCCGAACTTGTC-AAGAACTTATTTATGTAAGAATTATTTCTCTCATG
1 GTTCTTGGACAAACATCCGAACTTGTCAAAGAACTTATTTACATAAGAATTATTTCACTCATG
*
14605019 GTTCTTGGACGAACATCCGAACTTGTCAAA
1 GTTCTTGGACAAACATCCGAACTTGTCAAA
14605049 CTTTTACGAT
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
60 3 0.04
61 48 0.62
62 24 0.31
63 2 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (63 bp):
GTTCTTGGACAAACATCCGAACTTGTCAAAGAACTTATTTACATAAGAATTATTTCACTCATG
Found at i:14605023 original size:302 final size:303
Alignment explanation
Indices: 14604464--14605064 Score: 938
Period size: 302 Copynumber: 2.0 Consensus size: 303
14604454 TGATCCATTC
* *
14604464 TTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAAGAGTTTGTC
1 TTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAAGAGTTCGTA
* *
14604529 TTTTTGTAAACAAGTTTCGGTCCTTGAATAAAAACTTATTCATGTGGCAATTGGTTCTCTCTTGG
66 TTTTTGTAAACAAGTTTCGGTCCTTGAATAAAAACTTATTCACGTGGCAATTGGTTCTCTCTTAG
* * * * *
14604594 TTCTTGGACGAACTTTCGAACAAGTGAAAGACTTATTTACACGAGCACTGTTTCACTCTTGGTTC
131 TTCTTGGACGAACATTCAAACAAGTCAAAGACTTATTTACACAAGCACTATTTCACTCTTGGTTC
* * * * *
14604659 TTTGTCGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGGTTCTTG
196 TTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATGGTTCTTG
14604724 GACG-ACATCCGAACTTGTCAAACTTTTACGATTTCTTTACGA
261 GACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTACGA
* * *
14604766 TTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTGT-AAGTAGTTCGT
1 TTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAAG-AGTTCGT
*
14604830 ATTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTT
65 ATTTTTGTAAACAAGTTTCGGTCCTTGAA-TAAAAACTTATTCACGTGGCAATTGGTTCTCTCTT
** * * *
14604895 AGTTCTTGGACGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGT
129 AGTTCTTGGACGAACATTCAAACAAGTCAAAGACTTATTTACACAAGCACTATTTCACTCTTGGT
* *
14604960 T-TTGGACAAACTTCCGAACTTGTCAAGAACTTATTTATGTAAGAATTATTTCTCTCATGGTTCT
194 TCTTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATGGTTCT
14605024 TGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
259 TGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
14605065 TATAATTCCA
Statistics
Matches: 271, Mismatches: 25, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
301 3 0.01
302 146 0.54
303 122 0.45
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (303 bp):
TTTCGACCAATTTTTCGAACATCCCATGCTCGGGAAATCGCATAATTTGGTCTAAAGAGTTCGTA
TTTTTGTAAACAAGTTTCGGTCCTTGAATAAAAACTTATTCACGTGGCAATTGGTTCTCTCTTAG
TTCTTGGACGAACATTCAAACAAGTCAAAGACTTATTTACACAAGCACTATTTCACTCTTGGTTC
TTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATGGTTCTTG
GACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTACGA
Found at i:14605494 original size:279 final size:277
Alignment explanation
Indices: 14604955--14605495 Score: 764
Period size: 279 Copynumber: 1.9 Consensus size: 277
14604945 TATTTCACTC
* * *
14604955 TTGGTTTTGGACAAACTTCCGAACTTGTCAAGAACTTATTTATGTAAGAATTATTTCTCTCATGG
1 TTGGTTTTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATGC
*
14605020 TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAATTCCAGTTCCAAAAA
66 TTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAATTCCAGTTCCAAAAA
* * ** *
14605085 GCATTCAAGATGATCCATTCTTTCGAGAAATTTTTCGAATGTTCCATGCTCTGGAAATCGCATAA
131 GCATTCAAGATAATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGCTCTGGAAATCCCATAA
* * * *
14605150 TTTGGTCTAAATAGTTTGTCTTTTTGTAAACAAGTTTCAGTCCTTGAATTAGAAACTTTTTTACG
196 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCAGTCCTTCAATTAAAAACTTATTTACG
14605215 TGGCAGTTGGTTCTCTT
261 TGGCAGTTGGTTCTCTT
* * * *
14605232 TTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTG
1 TTGGTT-TTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATG
*
14605297 CTTCTTGGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGA-TTCCAA
65 CTTCTT-GGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAA-TTCCAGTTCCAA
* * *
14605361 AAAGTATTCAAGGTAATCCATTAC-TTCTAGAAATTTTTCAAACATTCCATGCTC-GGAAAATCC
128 AAAGCATTCAAGATAATCCATT-CTTTCGAGAAATTTTTCAAACATTCCATGCTCTGG-AAATCC
* * * ** * *
14605424 CATCATTTGGTCTAACTAGTTTGTCATTTTGTAAACCAGTTTTGGTCTTTCAGTTAAAAACTTAT
191 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCAGTCCTTCAATTAAAAACTTAT
14605489 TTACGTG
256 TTACGTG
14605496 AGAATTGTAT
Statistics
Matches: 231, Mismatches: 28, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
277 6 0.03
278 59 0.26
279 161 0.70
280 5 0.02
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (277 bp):
TTGGTTTTGGACAAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCATGC
TTCTTGGACAAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAATTCCAGTTCCAAAAA
GCATTCAAGATAATCCATTCTTTCGAGAAATTTTTCAAACATTCCATGCTCTGGAAATCCCATAA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCAGTCCTTCAATTAAAAACTTATTTACG
TGGCAGTTGGTTCTCTT
Found at i:14605645 original size:215 final size:217
Alignment explanation
Indices: 14605262--14605727 Score: 561
Period size: 215 Copynumber: 2.2 Consensus size: 217
14605252 CGAACTTGTC
*
14605262 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGGACAAACATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGGACAAACATCCGAACTTGTCAA
* * * * **
14605327 ACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGGTAATCCATTACTTCTAGA
66 ACTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGAATTCAAGACAATCCATTACTTCTAGA
* * * * * *
14605392 AATTTTTCAAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAACTAGTTTGTCATTTTGTA
131 AATTTTCCAAACATTCCACGCTCGGAAAATCACATCATTTGGTCGAAATAGTTTGTCATTTTGAA
* * *
14605457 AACCAGTTTTGGTCT-TTCAGTT
196 AACAAGTTTTGGACTGTT-AATT
* * * ** *
14605479 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTT-GGATGAA-TTCTC-AAGCTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGGACAAACATC-CGAA-CTTGTC
* ** *
14605540 AAACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACAATCCATTCCTT-TG
64 AAACTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGAATTCAAGACAATCCATTACTTCT-
14605604 AGCAAA-TTTCCAAACATTCCACGCTC-GAGAAATCACATCATTTGGTCGAAATAGTTTGTCATT
128 AG-AAATTTTCCAAACATTCCACGCTCGGA-AAATCACATCATTTGGTCGAAATAGTTTGTCATT
14605667 TTGAAAACAAGTTTTGGACTGTTAATT
191 TTGAAAACAAGTTTTGGACTGTTAATT
* * *
14605694 AATAACTTAGTTACATGAGAATTGTTTCTCTCTT
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
14605728 TGTGTTTTGG
Statistics
Matches: 212, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
214 7 0.03
215 161 0.76
216 16 0.08
217 28 0.13
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (217 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGCTTCTTGGGACAAACATCCGAACTTGTCAA
ACTTTCACGAGTTCTTTTATAACTTAGATTCCAAAAAGAATTCAAGACAATCCATTACTTCTAGA
AATTTTCCAAACATTCCACGCTCGGAAAATCACATCATTTGGTCGAAATAGTTTGTCATTTTGAA
AACAAGTTTTGGACTGTTAATT
Found at i:14605806 original size:61 final size:62
Alignment explanation
Indices: 14605692--14605879 Score: 256
Period size: 61 Copynumber: 3.0 Consensus size: 62
14605682 GGACTGTTAA
* * *
14605692 TTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTTGTGTT-TTGGACGAACTTCCAAACTTG
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TTG-GTTCTTGGACGAACTTCCAAACTTG
*
14605755 TTAAAAACTTATTTACGTGA-AAATGTTTCTCTCTTGGTTCTTGGACGAACTT-CAATACTTG
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA-ACTTG
* * *
14605816 TCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGGTTCTTGGATGAACATCCAAACTTG
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAACTTCCAAACTTG
14605879 T
1 T
14605880 CAAACTTTTA
Statistics
Matches: 112, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
60 6 0.05
61 39 0.35
62 25 0.22
63 39 0.35
64 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (62 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG
Found at i:14605880 original size:63 final size:61
Alignment explanation
Indices: 14605697--14605883 Score: 252
Period size: 63 Copynumber: 3.0 Consensus size: 61
14605687 GTTAATTAAT
* * *
14605697 AACTTAGTTACATGAGAATTGTTTCTCTCTTTGTGTT-TTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTC-TTG-GTTCTTGGACGAAC-TCCAAACTTGTCAAA
* *
14605760 AACTTATTTACGTGA-AAATGTTTCTCTCTTGGTTCTTGGACGAACTTCAATACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCAA-ACTTGTCAAA
*
14605821 AACTTATTTACGTGAGAATTGTTTCTCTCTCTGGTTCTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGACGAAC-TCCAAACTTGTCAAA
14605884 CTTTTATGAT
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
60 7 0.06
61 37 0.33
62 25 0.23
63 38 0.34
64 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.40
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTCCAAACTTGTCAAA
Found at i:14606134 original size:340 final size:339
Alignment explanation
Indices: 14605479--14606496 Score: 1239
Period size: 340 Copynumber: 3.0 Consensus size: 339
14605469 TCTTTCAGTT
* * * *
14605479 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAA-TTCTCAAGCTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATC-CAAACTTGTCAA
* * * * * *
14605542 ACTTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGAATTCAAGACAATCCATTCCTTT-GA
65 ACTTTTACGATTTCTTTTATAACTTCA-GTTCCTAAAAGTATTCAAGATAATCCATT-CTTTCAA
* * * * *
14605605 GCAAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCGAAATAGTTTGTCATTTTG
128 GC-AATTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTG
* *
14605670 AAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTTGTGTT-
192 TAAACAAGTTTTGGACTGTTAATTAATAACTTAATTACATGAGAATTGTTTCTCTC-TTG-GTTC
*
14605734 TTGGACGAACTTCCAAACTTGTTAAAAACTTATTTACGTGA-AAATGTTTCTCTCTTGGTTCTTG
255 TTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTG
14605798 GACGAACTT-CAATACTTGTC
320 GACGAACTTCCAA-ACTTGTC
14605818 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGGTTCTTGGATGAACATCCAAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGATGAACATCCAAACTTGTCAA
* * *
14605883 ACTTTTATGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCAAGC
65 ACTTTTACGATTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCAAGC
* * * * * * *
14605948 AATTTTCGGACATTCCTTGCTCGGGAAATCGCTTAATTTGGTCTAAATAGTTCGTCTTTTTGTAA
130 AATTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
* * * * * * *
14606013 ACAAGTTTCGGTCCT-TGAATTAAAAACATT-TTTACGTG-GCAATTGGTTCTCTCTTGGTTCTT
195 ACAAGTTTTGG-ACTGTTAATTAATAAC-TTAATTACATGAG-AATTGTTTCTCTCTTGGTTCTT
* * * * * * * * *
14606075 GTACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGA
257 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGA
*
14606140 CGAACTTCCGAACTTGTC
322 CGAACTTCCAAACTTGTC
* * ** * *
14606158 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGTAAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
* * * * *
14606223 CTTTTACGATTTGTTTTATAACTTC-GATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCAG-TTCCTAAAAGTATTCAAGATAATCCATTCTTTCAAGC
* * * * *
14606287 AATTTTTTGAACCTTCCATACTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
130 AA-TTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTA
14606352 AACAAGTTTTGGACTGTTAATTAATAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
194 AACAAGTTTTGGACTGTTAATTAATAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
14606417 ACGAACTTCCAAACTTATCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTAGACG
259 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACG
* *
14606482 AACATCCGAACTTGT
324 AACTTCCAAACTTGT
14606497 TAAACTTTTA
Statistics
Matches: 575, Mismatches: 88, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
338 4 0.01
339 155 0.27
340 331 0.58
341 82 0.14
342 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCAGTTCCTAAAAGTATTCAAGATAATCCATTCTTTCAAGCA
ATTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATTAATAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAAATGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTC
Found at i:14606191 original size:62 final size:62
Alignment explanation
Indices: 14606053--14606222 Score: 216
Period size: 62 Copynumber: 2.8 Consensus size: 62
14606043 TTTACGTGGC
* * * * *
14606053 AATTGGTTCTCTCTTGGTTCTTGTACGAACTTTCGAACTTGTCAAAGACTTATTTACATGAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAG
* * * * *
14606115 TACTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAG
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAG
* * *
14606177 AATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGT-AAAA
1 AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAA
14606223 CTTTTACGAT
Statistics
Matches: 91, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
61 4 0.04
62 87 0.96
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (62 bp):
AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACATAAG
Found at i:14606476 original size:62 final size:62
Alignment explanation
Indices: 14606377--14606494 Score: 182
Period size: 62 Copynumber: 1.9 Consensus size: 62
14606367 GTTAATTAAT
* * *
14606377 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAA
1 AACTTAATTACATGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCAAACTTATCAAA
* * *
14606439 AACTTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCGAACTT
1 AACTTAATTACATGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCAAACTT
14606495 GTTAAACTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (62 bp):
AACTTAATTACATGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCAAACTTATCAAA
Found at i:14606613 original size:278 final size:278
Alignment explanation
Indices: 14606100--14606782 Score: 938
Period size: 278 Copynumber: 2.5 Consensus size: 278
14606090 CTTGTCAAAG
* * * * *
14606100 ACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACT
1 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* * *
14606165 TATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGTAAAACTTTTAC
66 TATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTAAAACTTTTAC
* * *
14606230 GATTTGTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTT
131 GATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTC
* * * *
14606295 GAACCTTCCATACTCGGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
196 GAACATTCCATACTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
*
14606360 TTGG-ACTGTTAATT-AAT
261 TTGGTACT-TGAATTAAAT
* *
14606377 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAAC
1 -ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAAC
* *
14606442 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCGAACTTGTTAAACTTTTA
65 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTAAAACTTTTA
* * ** * * *
14606507 TGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTT
130 CGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTT
* * *
14606572 CGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACAAGT
195 CGAACATTCCATACTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
*
14606637 TTTGGTCCTTGAATTAAAT
260 TTTGGTACTTGAATTAAAT
* * * * * *
14606656 ACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAAAACT
1 ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
* * * * * *
14606721 TATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAAGTTGTCAAAACTT
66 TATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGT-AAAACTT
14606783 ATTTACGTAA
Statistics
Matches: 355, Mismatches: 47, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
278 344 0.97
279 11 0.03
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (278 bp):
ACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACT
TATTTACGTGAGAATTGTTTCTCTCTTGATTCTTGGACGAACATCCGAACTTGTAAAACTTTTAC
GATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTC
GAACATTCCATACTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGTT
TTGGTACTTGAATTAAAT
Found at i:14606809 original size:61 final size:61
Alignment explanation
Indices: 14606656--14606839 Score: 242
Period size: 61 Copynumber: 3.0 Consensus size: 61
14606646 TGAATTAAAT
* * * * *
14606656 ACTTATTTACGTGAGATTTGGTTCTCTATTGGTTCTTGGATGAACTTTCAAACTTGTCAAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTC-AAA
* * *
14606718 ACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAAGTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
* * ** *
14606779 ACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGTCAAA
1 ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
14606840 CTTTTACGAT
Statistics
Matches: 106, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
61 56 0.53
62 50 0.47
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (61 bp):
ACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAA
Found at i:14606958 original size:617 final size:618
Alignment explanation
Indices: 14605755--14607033 Score: 2016
Period size: 617 Copynumber: 2.1 Consensus size: 618
14605745 TCCAAACTTG
* *
14605755 TTAAAAACTTATTTACGTGA-AAATGTTTCTCTCTTGGTTCTTGGACGAACTTCAATACTTGTCA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAATACTTATCA
* * *
14605819 AAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGGTTCTTGGATGAACATCCAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGATTCTTAGACGAACATCCAAACTTGTCAAA
*
14605884 CTTTTATGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCAAGCA
131 CTTTTATGATTTCTTATATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCAAGCA
* * * * *
14605949 ATTTTCGGACATTCCTTGCTCGGGAAATCGCTTAATTTGGTCTAAATAGTTCGTCTTTTTGTAAA
196 ATTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTCGTCTTTTTGTAAA
* *
14606014 CAAGTTTCGGTCCTTGAATTAAAAACATTTTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGTAC
261 CAAGTTTCGGTCCTTGAATTAAAAACATTTTTACGTGGCAATTGGTTCTCTATTGGTTCTTGGAC
* *
14606079 GAACTTTCGAACTTGTCAAAGACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAA
326 GAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAA
14606144 CTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACAT
391 CTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACAT
*
14606209 CCGAACTTGTAAAACTTTTACGATTTGTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATC
456 CCGAACTTGTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATC
* ** * * *
14606274 CATTCCTTCTAGAAATTTTTTGAACCTTCCATACTCGGAAAATCCCATCATTTGGTCTAAATAGT
521 CATTACTTCTAGAAATTTTTCAAACATTCCATACTCGAAAAATCCCATAATTTGGTCTAAATAGT
14606339 TTGTCATTTTGTAAACAAGTTTTGGACTGTT-AA
586 TTGTCATTTTGTAAACAAGTTTTGGACT-TTCAA
* * *
14606372 TTAATAACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAA-ACTTATC
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CAATACTTATC
* *
14606436 AAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGATTCTTAGACGAACATCCGAACTTGTTAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGATTCTTAGACGAACATCCAAACTTGTCAA
* *
14606500 ACTTTTATGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGC
130 ACTTTTATGATTTCTTATATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCAAGC
*
14606565 AATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTA
195 AA-TTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTCGTCTTTTTGTA
* * *
14606630 AACAAGTTTTGGTCCTTGAATTAAATAC-TTATTTACGTGAG-ATTTGGTTCTCTATTGGTTCTT
259 AACAAGTTTCGGTCCTTGAATTAAAAACATT-TTTACGTG-GCAATTGGTTCTCTATTGGTTCTT
* * * *
14606693 GGATGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGA
322 GGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGA
* *
14606758 TGAACTTCCGAAGTTGTC-AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAA
387 CGAACTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAA
* * *
14606822 ACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGATTCTAAAAAGTATTCAAGGT
452 ACATCCGAACTTGTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGAT
* *
14606887 AATCCATTACTTCTAGAAATTTTTCAAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAAC
517 AATCCATTACTTCTAGAAATTTTTCAAACATTCCATACTCGAAAAATCCCATAATTTGGTCTAAA
* * *
14606952 TAGTTTGTCATTTTGTAAACCAGTTTTGGTCTTTCAG
582 TAGTTTGTCATTTTGTAAACAAGTTTTGGACTTTCAA
* *
14606989 TTAAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGA
1 TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
14607034 TGAATTCTCG
Statistics
Matches: 604, Mismatches: 52, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
616 14 0.02
617 332 0.55
618 254 0.42
619 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (618 bp):
TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAATACTTATCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTCTGATTCTTAGACGAACATCCAAACTTGTCAAA
CTTTTATGATTTCTTATATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCAAGCA
ATTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTCGTCTTTTTGTAAA
CAAGTTTCGGTCCTTGAATTAAAAACATTTTTACGTGGCAATTGGTTCTCTATTGGTTCTTGGAC
GAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTACTATTTCACTCTTGGTTCTTGGACGAA
CTTCCGAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACAT
CCGAACTTGTAAAACTTTTACGATTTCTTTTATAACTTCGATTCCAAAAAGTATTCAAGATAATC
CATTACTTCTAGAAATTTTTCAAACATTCCATACTCGAAAAATCCCATAATTTGGTCTAAATAGT
TTGTCATTTTGTAAACAAGTTTTGGACTTTCAA
Found at i:14607005 original size:339 final size:339
Alignment explanation
Indices: 14606377--14607054 Score: 961
Period size: 339 Copynumber: 2.0 Consensus size: 339
14606367 GTTAATTAAT
14606377 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAAC
1 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAAC
* * *
14606442 TTATTTACGTGAGAATTGTTTCTCTCTTGATTCTTAGACGAACATCCGAACTTGTTAAACTTTTA
66 TTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTAGACAAACATCCGAACTTGTCAAACTTTTA
* * * * *
14606507 TGATTTCTTATATAACTTCGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATTTTT
131 CGATTTCTTATATAACTTCGATTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATTTTT
* ** *
14606572 CGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACAAGT
196 CAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
* * *
14606637 TTTGGTCCTTGAATTAAATACTTATTTACGTGAGATTTGGT-TCTCTATTGGTTCTTGGATGAAC
261 TTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-ATTGGTTCTTGGATGAA-
14606701 TT-TCAAACTTGTCAAA
323 TTCTCAAACTTGTCAAA
* * * * * *
14606717 AACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAAGTTGTC-AAAAC
1 AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAAC
* *
14606781 TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGTCAAACTTTTA
66 TTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTAGACAAACATCCGAACTTGTCAAACTTTTA
* *
14606846 CGATTTCTTTTATAACTTCGATT-CTAAAAAGTATTCAAGGTAATCCATTAC-TTCTAGAAATTT
131 CGATTTCTTATATAACTTCGATTCCT-AAAAGTATTCAAGATAATCCATT-CTTTCTAGAAATTT
* * * *
14606909 TTCAAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAACTAGTTTGTCATTTTGTAAACCA
194 TTCAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAA
* * * *
14606974 GTTTTGGTCTTTCAGTTAAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTGTTGGATGAAT
259 GTTTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCATTGGTTCTTGGATGAAT
* *
14607039 TCTCGAGCTTGTCAAA
324 TCTCAAACTTGTCAAA
14607055 CTTTCACGAG
Statistics
Matches: 299, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
337 2 0.01
338 31 0.10
339 212 0.71
340 54 0.18
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (339 bp):
AACTTAATTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTATCAAAAAC
TTATTTACGTAAGAATTGTTTCTCTCTTGATTCTTAGACAAACATCCGAACTTGTCAAACTTTTA
CGATTTCTTATATAACTTCGATTCCTAAAAGTATTCAAGATAATCCATTCTTTCTAGAAATTTTT
CAAACATTCCATGCTCGAAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGTAAACAAGT
TTTGGTCCTTCAATTAAAAACTTATTTACGTGAGAATTGTATCTCATTGGTTCTTGGATGAATTC
TCAAACTTGTCAAA
Found at i:14607161 original size:215 final size:216
Alignment explanation
Indices: 14606776--14607266 Score: 571
Period size: 215 Copynumber: 2.3 Consensus size: 216
14606766 CGAAGTTGTC
* * *
14606776 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACAAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACATCCGAACTTGTCAAAC
* * * * **
14606841 TTTTACGATTTCTTTTATAACTTCGATTCTAAAAAGTATTCAAGGTAATCCATTACTTCTAGAAA
66 TTTCACGAGTTCTTTTATAACTTAGATTCTAAAAAGAATTCAAGACAATCCATTACTTCTAGAAA
* * * * * *
14606906 TTTTTCAAACATTCCATGCTCGAAAAATCCCATAATTTGGTCTAACTAGTTTGTCATTTTGTAAA
131 TTTTCCAAACATTCCACGCTCGAAAAATCACATAATTTGGTCGAAATAGTTTGTCATTTTGAAAA
* * *
14606971 CCAGTTTTGGTCT-TTCAGTTA
196 CAAGTTTTGGACTGTT-AATTA
* ** * *
14606992 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAA-TTCTCGAGCTTGTCAAA
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACATC-CGAACTTGTCAAA
* * * *
14607055 CTTTCACGAGTTCTTTTATAACTTAGGTTCCT-TAAAGAATTCAAGACGATCCATTCCTT-TGAG
65 CTTTCACGAGTTCTTTTATAACTTAGATT-CTAAAAAGAATTCAAGACAATCCATTACTTCT-AG
* *
14607118 CAAA-TTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCGAAATAGTTTGTCATTTTG
128 -AAATTTTCCAAACATTCCACGCTCGAAAAATCACATAATTTGGTCGAAATAGTTTGTCATTTTG
14607182 AAAACAAGTTTTGGACTGTTAATTA
192 AAAACAAGTTTTGGACTGTTAATTA
* * * * * * *
14607207 ATAACTTAGTTACATGAGAATTGTTTCTCTCTTTGTTGTTGGACGAACTTCCAAACTTGT
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACATCCGAACTTGT
14607267 TAAAAACTGA
Statistics
Matches: 231, Mismatches: 37, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
214 3 0.01
215 169 0.73
216 56 0.24
217 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.38
Consensus pattern (216 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTGTTGGACAAACATCCGAACTTGTCAAAC
TTTCACGAGTTCTTTTATAACTTAGATTCTAAAAAGAATTCAAGACAATCCATTACTTCTAGAAA
TTTTCCAAACATTCCACGCTCGAAAAATCACATAATTTGGTCGAAATAGTTTGTCATTTTGAAAA
CAAGTTTTGGACTGTTAATTA
Found at i:14607390 original size:61 final size:62
Alignment explanation
Indices: 14607209--14607393 Score: 282
Period size: 62 Copynumber: 3.0 Consensus size: 62
14607199 GTTAATTAAT
* * * * *
14607209 AACTTAGTTACATGAGAATTGTTTCTCTCTTTGTTGTTGGACGAACTTCCAAACTTGTTAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14607271 AACTGATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * *
14607333 AACTTATTTACGTGAGAAGTGTTTC-CTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14607394 CTTTTATGAT
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
61 34 0.30
62 79 0.70
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (62 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
Found at i:14607851 original size:276 final size:276
Alignment explanation
Indices: 14607266--14607945 Score: 940
Period size: 276 Copynumber: 2.5 Consensus size: 276
14607256 TCCAAACTTG
* * * *
14607266 TTAAAAACTGATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
1 TTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
14607331 AAAACTTATTTACGTGAGAAGTGTTTC-CTCTTGGTTCTTGGATGAACATCCAAACTTGTCAAAC
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAC
* ** * * *
14607395 TTTTATGATTTCTTTATAACTTCAGTTCTTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAAT
131 TTTTACGATTTCTTTATAACTTCAGTTCCAGAAAGTATTCAAGATAATCCATTCCTTCGAGAAAT
* * * * *
14607460 TTTTCGAATATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACA
196 TTTTCGAACATTCCATACTCAGAAAATCCCATAATTTGATCTAAATAGTTTGTCTTTTGTAAACA
*
14607525 AGTTTCGGTCCTTGAA
261 AGTTTCGGTACTTGAA
** **
14607541 TTAAAAACTTTTTTACGTG-GCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
1 TTAAAAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* *
14607605 AAAAA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAA
65 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
*
14607669 CTTTTACGATTTCTTTTATAACTTCAGTTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAA
130 CTTTTACGATTTC-TTTATAACTTCAGTTCCAGAAAGTATTCAAGATAATCCATTCCTTCGAGAA
** *
14607734 ATTTTTCGAACATTCCATACTC-GAAAAATCCCATCGTTTGATGTAAATAGTTTGTCATTTTGTA
194 ATTTTTCGAACATTCCATACTCAG-AAAATCCCATAATTTGATCTAAATAGTTTGTC-TTTTGTA
* *
14607798 AACAAGTTTTGG-AC-TGTTA
257 AACAAGTTTCGGTACTTG-AA
* * * * *
14607817 TTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTTTTAGATGAACTTTTGAACTTGTCA
1 TTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
* *
14607882 AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAA
14607946 AACTTATTTA
Statistics
Matches: 356, Mismatches: 41, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
274 21 0.06
275 110 0.31
276 151 0.42
277 74 0.21
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (276 bp):
TTAAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAC
TTTTACGATTTCTTTATAACTTCAGTTCCAGAAAGTATTCAAGATAATCCATTCCTTCGAGAAAT
TTTTCGAACATTCCATACTCAGAAAATCCCATAATTTGATCTAAATAGTTTGTCTTTTGTAAACA
AGTTTCGGTACTTGAA
Found at i:14607904 original size:62 final size:62
Alignment explanation
Indices: 14607822--14608001 Score: 261
Period size: 62 Copynumber: 2.9 Consensus size: 62
14607812 TGTTATTAAT
* * * * ***
14607822 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTTTTAGATGAACTTTTGAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
*
14607884 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
* * *
14607946 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTT
14608002 TTGAAACTTT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 108 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (62 bp):
AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACTTCCAAACTTGTCAAA
Found at i:14608174 original size:339 final size:337
Alignment explanation
Indices: 14607543--14609362 Score: 2533
Period size: 339 Copynumber: 5.4 Consensus size: 337
14607533 TCCTTGAATT
* * ** * *
14607543 AAAAACTTTTTTACGTG-GCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACATGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAA
*
14607607 AAATTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAACTT
65 AAATTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
14607672 TTACGATTTCTTTTATAACTTC-AGTTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
130 TTACGATTTCTTTTATAACTTCGA-TTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAAT
* *
14607736 TTTTCGAACATTCCATACTCGAAAAATCCCATCGTTTGATGTAAATAGTTTGTCATTTTGTAAAC
194 TTTTCGAACATTCCATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAAC
* *
14607801 AAGTTTTGGAC-TGTTATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTTTTAGATG
259 AAGTTTTGGACTTG-TATTAA-AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATG
*
14607865 AACTTTTGAACTTGTC
322 AACTTTCGAACTTGTC
14607881 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * * *
14607946 AACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTT
66 AA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
** * * * * *
14608011 TTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATT
130 TTACGATTTCTTTTATAACTTCGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
* * * * ** *
14608076 TTTTGAACA-TCCAATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAAC
195 TTTCGAACATTCC-ATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAAC
* * * * ** ** *
14608139 AAGTTTCGGTCCTTGAATTAAAATTTTTTTTACGTG-GCAATTGGATCTCTCTTGGTTCTTGGAC
259 AAGTTTTGG-ACTTGTATTAAAA-CTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGAT
14608203 GAACTTTCGAACTTGTC
321 GAACTTTCGAACTTGTC
* * * * *
14608220 AAAAACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14608285 AATTATTTACGTAAGAATTGTTTCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAACTTT
66 AATTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* * *
14608350 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAGTTT
131 TACGATTTCTTTTATAACTTCGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
*
14608415 TTCGAACATTCCATACTCGGAAAATCCCATCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAA
196 TTCGAACATTCCATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAACAA
* * *
14608480 GTTTTGGACTGTTTATTATTAACTCAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
261 GTTTTGGACT-TGTATTA-AAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
*
14608545 CTTTCGAACTTCTC
324 CTTTCGAACTTGTC
14608559 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14608624 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTT
66 AA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTT
** * * * * *
14608689 TTACGATTTCTTTTATAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATT
130 TTACGATTTCTTTTATAACTTCGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
* * * * ** *
14608754 TTTTGAACA-TCCAATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTC-TTTTGTAAAC
195 TTTCGAACATTCC-ATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAAC
* ** * * ** ** *
14608817 AAGTTTCAGTCCTTGAATTAAAATTTTTTTACGTG-GCAATTGGATCTCTCTTGGTTCTTGGACG
259 AAGTTT-TGGACTTGTATTAAAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGATG
14608881 AACTTTCGAACTTGTC
322 AACTTTCGAACTTGTC
* * * * *
14608897 AAAAACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
*
14608962 AATTATTTACGTAAGAATTGTTTCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAACTTT
66 AATTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTT
* *
14609027 TACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
131 TACGATTTCTTTTATAACTTCGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
*
14609092 TTCGAACATTCCATACTCGGAAAATCCCATCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAA
196 TTCGAACATTCCATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAACAA
* * *
14609157 GTTTTGGACTGTTTATTATTAACTCAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
261 GTTTTGGACT-TGTATTA-AAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAA
14609222 CTTTCGAACTTGTC
324 CTTTCGAACTTGTC
14609236 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
* * * *
14609301 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
66 AA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
14609363 AACTTATTTA
Statistics
Matches: 1285, Mismatches: 174, Indels: 44
0.85 0.12 0.03
Matches are distributed among these distances:
337 158 0.12
338 372 0.29
339 538 0.42
340 217 0.17
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (337 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
AATTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTT
TACGATTTCTTTTATAACTTCGATTCCAGAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTT
TTCGAACATTCCATACTCGGAAAATCCCATCGTTTGGTGTAAATAGTTTGTCATTTTGTAAACAA
GTTTTGGACTTGTATTAAAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACT
TTCGAACTTGTC
Found at i:14608177 original size:615 final size:615
Alignment explanation
Indices: 14606991--14608284 Score: 1960
Period size: 614 Copynumber: 2.1 Consensus size: 615
14606981 TCTTTCAGTT
* * * *
14606991 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTGTTGGATGAA-TTCTCGAGCTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-CGAACTTGTCAA
** *
14607054 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGAGC
65 ACTTTCACGAGTTCTTTTATAACTTAGGTTCCAGAAAGAATTCAAGACAATCCATTCCTTTGAGC
* * *
14607119 AAATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCGAAATAGTTTGTCATTTTGAA
130 AAATTTCCAAACATTCCACACTCGAAAAATCACATCATTTGATCGAAATAGTTTGTCATTTTGAA
* *
14607184 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTTGTTGTTGG
195 AACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTGTTAG
* *
14607249 ACGAACTTCCAAACTTGTTAAAAACTGATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG
260 ACGAACTTCCAAACTTGTCAAAAACTGATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
* *
14607314 AACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAAGTGTTTCCTCTTGGTTCTTGGATGAACA
325 AACTTCCAAACTTGTCAAAAACTTATTTACATGAGAAGTGTTTCCTCTTGGTTCTTGGACGAACA
* *
14607379 TCCAAACTTGTCAAACTTTTATGATTTCTTTATAACTTCAGTTCTTGAAAGTATTCAAGATGATC
390 TCCAAACTTGTCAAACTTTTACGATTTCTTTATAACTTCAGTTCTTGAAAGTATCCAAGATGATC
*
14607444 CATTCTTTCGAGCAATTTTTCGAATATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGT
455 CATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGT
14607509 TTGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTTTTTACGTGGCAATTGGATCTCT
520 TTGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTTTTTACGTGGCAATTGGATCTCT
14607574 CTTGGTTCTTGGACGAACTTTCGAACTTGTC
585 CTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * *
14607605 AAAAA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
* * * *
14607669 CTTTTACGATTTCTTTTATAACTTCA-GTTCCAGAAAGTATTCAAGATAATCCATTCCTTCT-AG
66 CTTTCACGAGTTCTTTTATAACTT-AGGTTCCAGAAAGAATTCAAGACAATCCATTCCTT-TGAG
* * * * *
14607732 -AAATTTTTCGAACATTCCATACTCGAAAAATCCCATCGTTTGAT-GTAAATAGTTTGTCATTTT
129 CAAA-TTTCCAAACATTCCACACTCGAAAAATCACATCATTTGATCG-AAATAGTTTGTCATTTT
* * *
14607795 GTAAACAAGTTTTGGACTGTT-ATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTTT
192 GAAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTGT
* *** *
14607859 TAGATGAACTTTTGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
257 TAGACGAACTTCCAAACTTGTCAAAAACTGATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGG
*
14607924 ACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
322 ACGAACTTCCAAACTTGTCAAAAACTTATTTACATGAGAAGTGTTTC-CTCTTGGTTCTTGGACG
* * *
14607989 AACATCCGAACTTTTGAAACTTTTACGATTTCTTTTATAACTTC-GATTCTTGAAAGTATCCAAG
386 AACATCCAAACTTGTCAAACTTTTACGATTTC-TTTATAACTTCAG-TTCTTGAAAGTATCCAAG
* *
14608053 ATGATCCATTCTTTCGAGCAATTTTTTGAACA-TCCAATGCTCGGGAAATCGCATAATTTGGTCT
449 ATGATCCATTCTTTCGAGCAATTTTTCGAACATTCC-ATGCTCAGGAAATCGCATAATTTGGTCT
**
14608117 AAATAGTTTGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAATTTTTTTTACGTGGCAATTG
513 AAATAGTTTGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTTTTTACGTGGCAATTG
14608182 GATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
578 GATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTC
* * * * *
14608220 AAAAACTTATTTACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14608285 AATTATTTAC
Statistics
Matches: 612, Mismatches: 57, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
613 168 0.27
614 199 0.33
615 195 0.32
616 50 0.08
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (615 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
CTTTCACGAGTTCTTTTATAACTTAGGTTCCAGAAAGAATTCAAGACAATCCATTCCTTTGAGCA
AATTTCCAAACATTCCACACTCGAAAAATCACATCATTTGATCGAAATAGTTTGTCATTTTGAAA
ACAAGTTTTGGACTGTTAATTAATAACTTAGTTACATGAGAATTGTTTCTCTCTTGGTTGTTAGA
CGAACTTCCAAACTTGTCAAAAACTGATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
ACTTCCAAACTTGTCAAAAACTTATTTACATGAGAAGTGTTTCCTCTTGGTTCTTGGACGAACAT
CCAAACTTGTCAAACTTTTACGATTTCTTTATAACTTCAGTTCTTGAAAGTATCCAAGATGATCC
ATTCTTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATAATTTGGTCTAAATAGTT
TGTCTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTTTTTACGTGGCAATTGGATCTCTC
TTGGTTCTTGGACGAACTTTCGAACTTGTC
Found at i:14608323 original size:61 final size:62
Alignment explanation
Indices: 14608184--14608345 Score: 236
Period size: 61 Copynumber: 2.6 Consensus size: 62
14608174 GGCAATTGGA
* *
14608184 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTACTGTT
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
* * *
14608246 TCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAA-TTATTTACGTAAGAATTGTT
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
* * * *
14608307 TCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAA
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14608346 CTTTTACGAT
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 50 0.56
62 40 0.44
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
Found at i:14608609 original size:62 final size:62
Alignment explanation
Indices: 14608507--14608679 Score: 292
Period size: 62 Copynumber: 2.8 Consensus size: 62
14608497 ATTAACTCAG
* *
14608507 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTCTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAAAACTTAT
* * *
14608569 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAAAACTTAT
*
14608631 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTT
14608680 TTGAAACTTT
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 103 1.00
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTCTCAAAAACTTAT
Found at i:14608852 original size:677 final size:678
Alignment explanation
Indices: 14607572--14609356 Score: 3394
Period size: 677 Copynumber: 2.6 Consensus size: 678
14607562 AATTGGATCT
14607572 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
* * * *
14607637 TGCTTCTTGGACGAACATCCAAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCAGTTCCAG
66 TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
*
14607702 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGAAAAATCCCA
131 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATCCCA
* * * *
14607767 TCGTTTGATGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTG-TTATTAATAACTTAGTT
196 TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
* * *
14607831 ACGTGAGAATTGTTTCTCTCTTGGTTTTTAGATGAACTTTTGAACTTGTCAAAAACTTATTTACA
261 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACA
*
14607896 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACATGA
326 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
14607961 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTTTTACGATTTCTTTTA
391 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTTTTACGATTTCTTTTA
14608026 TAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCAAT
456 TAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCAAT
*
14608091 GCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCGGTCCTTGAA
521 GCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCAGTCCTTGAA
14608156 TTAAAATTTTTTTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
586 TTAAAATTTTTTTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
14608221 AAAACTTATTTACATGAGTACTGTTTCA
651 AAAACTTATTTACATGAGTACTGTTTCA
14608249 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
14608314 TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
66 TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
*
14608379 AAAGTATTCAAGATAATCCATTCCTTCTAGAAGTTTTTCGAACATTCCATACTCGGAAAATCCCA
131 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATCCCA
14608444 TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
196 TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
*
14608509 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTCTCAAAAACTTATTTACA
261 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACA
14608574 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
326 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
14608639 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTTTTACGATTTCTTTTA
391 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTTTTACGATTTCTTTTA
14608704 TAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCAAT
456 TAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCAAT
14608769 GCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCAGTCCTTGAA
521 GCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCAGTCCTTGAA
14608834 TTAAAA-TTTTTTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
586 TTAAAATTTTTTTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
14608898 AAAACTTATTTACATGAGTACTGTTTCA
651 AAAACTTATTTACATGAGTACTGTTTCA
14608926 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
1 CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
14608991 TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
66 TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
14609056 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATCCCA
131 AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATCCCA
14609121 TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
196 TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
14609186 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACA
261 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACA
14609251 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
326 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
* *
14609316 GAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTT
391 GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTT
14609357 GTCAAAAACT
Statistics
Matches: 1087, Mismatches: 20, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
677 747 0.69
678 340 0.31
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (678 bp):
CTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGTAAGAATTGTTTCTCTCT
TGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCAA
AAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATCCCA
TCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTTTATTATTAACTCAGTT
ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTATTTACA
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTTTGAAACTTTTACGATTTCTTTTA
TAACTTCGATTCTTGAAAGTATCCAAGATGATCCATTCTTTCGAGCAATTTTTTGAACATCCAAT
GCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGTCTTTTGTAAACAAGTTTCAGTCCTTGAA
TTAAAATTTTTTTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCA
AAAACTTATTTACATGAGTACTGTTTCA
Found at i:14609000 original size:61 final size:62
Alignment explanation
Indices: 14608861--14609022 Score: 236
Period size: 61 Copynumber: 2.6 Consensus size: 62
14608851 GGCAATTGGA
* *
14608861 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTACTGTT
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
* * *
14608923 TCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAA-TTATTTACGTAAGAATTGTT
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
* * * *
14608984 TCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAA
1 TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14609023 CTTTTACGAT
Statistics
Matches: 90, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
61 50 0.56
62 40 0.44
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (62 bp):
TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATAAGAACTGTT
Found at i:14609286 original size:62 final size:62
Alignment explanation
Indices: 14609184--14609548 Score: 604
Period size: 62 Copynumber: 5.9 Consensus size: 62
14609174 ATTAACTCAG
* * *
14609184 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
*
14609246 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
14609308 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
14609370 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
14609432 GTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACTAACATCCTAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * * *
14609494 TTACGTAAGAATTTTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14609549 CTTTTACGAT
Statistics
Matches: 286, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 286 1.00
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:14609801 original size:62 final size:62
Alignment explanation
Indices: 14609729--14609888 Score: 241
Period size: 62 Copynumber: 2.6 Consensus size: 62
14609719 AATTGGTTCT
* * *
14609729 CTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
* * *
14609791 CTCTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCT
1 CTCTTGGTTCTTGGACGAACATT-CGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
*
14609853 CTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAA
14609889 CTTTTACAAT
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
61 2 0.02
62 86 0.97
63 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (62 bp):
CTCTTGGTTCTTGGACGAACATTCGAACTTGTCAAAAACTTATTTACATAAGAATTATTTCA
Found at i:14609835 original size:526 final size:525
Alignment explanation
Indices: 14608844--14609888 Score: 1515
Period size: 526 Copynumber: 2.0 Consensus size: 525
14608834 TTAAAATTTT
* * *
14608844 TTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTT
1 TTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATGT
* * *
14608909 ACATGAGTACTGTTTCACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAATTATTTACGT
66 ACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAATTATTTACGT
*
14608974 AAGAATTGTTTCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
131 AAGAATTGTTTCTCTCTTGCTACTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
* *
14609039 TATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCC
196 TATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGTCC
** * *
14609104 ATACTCGGAAAATCCCATCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGT
261 ATACTCGGAAAATCCCATAATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGACTGT
** ** * * * *
14609169 TTATTATTAACTCAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTG
326 GAATTAAAAACTCAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTG
* * *
14609234 TCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
391 TCAAAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
* *
14609299 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAA
456 AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
14609364 ACTTA
521 ACTTA
**
14609369 TTTACGTGAG-AATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATG
1 TTTACGTG-GCAATTGGATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATG
* * * * * *
14609433 TACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACTAACATCCTAACTTGTCAAAAACTTATTTAC
65 TACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA-TTATTTAC
* * *
14609498 GTAAGAATTTTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
129 GTAAGAATTGTTTCTCTCTTGCTACTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCT
* ** * * *
14609563 TTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAGT
194 TTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGT
* * **
14609628 CCATGCTCAGG-AAATCGCATAATTTTGTCTAAATAGTTTGT-ATTTTTGTAAACAAGTTTCGGT
259 CCATACTC-GGAAAATCCCATAATTCGGTCTAAATAGTTTGTCA-TTTTGTAAACAAGTTTCGG-
* * *
14609691 CCT-TGAATTAAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCA
321 ACTGTGAATTAAAAACTCAGTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAACATTCA
* * *
14609754 AACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCCGAAC
385 AACTTGTCAAAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACTTCCAAAC
*
14609819 TTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTG
450 TTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTG
14609884 TCAAA
515 TCAAA
14609889 CTTTTACAAT
Statistics
Matches: 460, Mismatches: 54, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
525 106 0.23
526 350 0.76
527 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.39
Consensus pattern (525 bp):
TTTACGTGGCAATTGGATCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATGT
ACATGAGAACTGTTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAATTATTTACGT
AAGAATTGTTTCTCTCTTGCTACTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTT
TATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGAACAGTCC
ATACTCGGAAAATCCCATAATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTCGGACTGT
GAATTAAAAACTCAGTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTG
TCAAAAACTTATTTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACTTCCAAACTTGTCA
AAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAAA
ACTTA
Found at i:14610000 original size:340 final size:339
Alignment explanation
Indices: 14609360--14610103 Score: 1111
Period size: 340 Copynumber: 2.2 Consensus size: 339
14609350 CAAACTTGTC
*
14609360 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTT-CAAACTTGTCAAA
* * * * * * *
14609425 AACTTATGTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGACTAACATCCTAACTTGTCAAAAAC
65 AACTTATGTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAAC
*
14609490 TTATTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTA
130 TTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTA
* * ** * *
14609555 CGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCAATTTTT
195 CAATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTT
* *
14609620 CGAACAGTCCATGCTCAGGAAATCGCATAATTTTGTCTAAATAGTTTGT-ATTTTTGTAAACAAG
260 CGAACAGTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCA-TTTTGTAAACAAG
*
14609684 TTTCGGTCCTTGAATT
324 TTTCGGTCCTTAAATT
14609700 AAAAACTTATTTACGTG-GCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAA
1 AAAAACTTATTTACGTGAG-AATTGGTTCTCTCTTGGTTCTTGGACGAAC-TTCAAACTTGTCAA
* * * *
14609764 AGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAA
64 AAACTTATGTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAA
* *
14609829 CTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTT
129 CTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTT
* *
14609894 ACAATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGGAATTTT
194 ACAATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTT
* *
14609959 TCGAACATTCCATGCTC-GGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
259 TCGAACAGTCCATGCTCAGG-AAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* *
14610023 GTTTTGGTCTTTAAATT
323 GTTTCGGTCCTTAAATT
*
14610040 AAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAAC-TTCAAACTTGTCAA
14610103 A
64 A
14610104 CTTTCACGAG
Statistics
Matches: 366, Mismatches: 32, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
339 37 0.10
340 325 0.89
341 4 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTCAAACTTGTCAAAA
ACTTATGTACATAAGAATTATTTCACTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAAAACT
TATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAACTTTTAC
AATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCGAGCAATTTTTC
GAACAGTCCATGCTCAGGAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT
TCGGTCCTTAAATT
Found at i:14610120 original size:215 final size:216
Alignment explanation
Indices: 14609824--14610319 Score: 719
Period size: 215 Copynumber: 2.3 Consensus size: 216
14609814 CGAACTTGTC
* * *
14609824 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * * *
14609889 CTTTTACAATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGGA
66 CTTTCACAAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTCTAGCA
* * * * *
14609954 ATTTTTCGAACATTCCATGCTCG-GAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
131 AATTTCCAAACATTCCATGCTCGAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTA
*
14610018 AACAAGTTTTGGTCT-TTAAATT
195 AACAAGTTTTGGACTGTT-AATT
*
14610040 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * ** * *
14610104 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCA
66 CTTTCACAAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTCTAGCA
14610169 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
131 AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
*
14610234 GCAAGTTTTGGACTGTTAATT
196 ACAAGTTTTGGACTGTTAATT
* * *
14610255 AATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14610320 AACTTATTTA
Statistics
Matches: 250, Mismatches: 27, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
215 186 0.74
216 64 0.26
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (216 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
CTTTCACAAGTTCTTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTACTTCTAGCA
AATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGACTGTTAATT
Done.