Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 70 of 144
Found at i:14610437 original size:62 final size:61
Alignment explanation
Indices: 14610258--14610443 Score: 282
Period size: 62 Copynumber: 3.0 Consensus size: 61
14610248 GTTAATTAAT
* *
14610258 AACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTCTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTCGAACTTGTCAAA
* *
14610320 AACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CGAACTTGTCAAA
* * *
14610382 AACTTATTTATGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCGGAACTTGTCAAA
1 AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTC-GAACTTGTCAAA
14610444 CTTTTATGAT
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
61 3 0.03
62 110 0.97
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (61 bp):
AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCGAACTTGTCAAA
Found at i:14610572 original size:555 final size:554
Alignment explanation
Indices: 14609484--14610659 Score: 1639
Period size: 555 Copynumber: 2.1 Consensus size: 554
14609474 CTAACTTGTC
* * * * *
14609484 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGAACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAA-TTGTTCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * *
14609549 CTTTTACGATTTCTTTTATAACTTTGGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
64 CTTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCA
* * * * * *
14609614 ATTTTTCGAACAGTCCATGCTCAGGAAATCGCATAATTTTGTCTAAATAGTTTGTATTTTTGTAA
129 AATTTCCAAACAGTCCATGCTCAGGAAATCACATAATTTGGTCAAAATAGTTTGTATTTTTGTAA
* *
14609679 ACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGA
194 ACAAGTTTCGGTACTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGA
* * * *
14609744 CGAACATTCAAACTTGTCAAAGACTTATTTACATAAGTATTATTTCACTCTTGGTTCTTGGACGA
259 CGAACATTCAAACTTCTCAAAAACTTATTTACATAAGAATTATTTCACTCTTAGTTCTTGGACGA
* *
14609809 ACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACA
324 ACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTGGGTTCTTGGACGAACA
* *
14609874 TCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTTGATTCCAAAAAGTATTCAAGATAAT
389 TCCGAACTTGTCAAACTTTTACAATTTATTTTATAACTTAGATTCCAAAAAGTATTCAAGATAAT
* * * *
14609939 CCATTCCTTCTAGGAATTTTTCGAACATTCCATGCTCGGAAAATCCCATCATTTGGTCTAAATAG
454 CCATTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAG
*
14610004 TTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
519 TTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
14610040 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGT-TCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* *
14610105 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTT-TAGCA
65 TTTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATT-CTTTCGAGCA
* *
14610169 AATTTCCAAACATTCCATGCTC-GAGAAATCACATCATTTGGTCAAAATAGTTTGTCA-TTTTGT
129 AATTTCCAAACAGTCCATGCTCAG-GAAATCACATAATTTGGTCAAAATAGTTTGT-ATTTTTGT
* * * * *
14610232 AAGCAAGTTTTGG-ACTGTTAATTAATAACTTAGTTACGTGAG-AATTGTTTCTCTCTTGGTTCT
192 AAACAAGTTTCGGTACT-TGAATTAAAAACTTAGTTACGTG-GCAATTGGTTCTCTCTTGGTTCT
* * * * * *
14610295 TGGACGAACTTTCGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGG
255 TGGACGAACATTCAAACTTCTCAAAAACTTATTTACATAAGAATTATTTCACTCTTAGTTCTTGG
* *
14610360 ACGAACTTCCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTGGGTTCTTGGACG
320 ACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTGGGTTCTTGGACG
* ** **
14610425 AACATCGGAACTTGTCAAACTTTTATGATTTATTTTATAACTTCAG-TTCCTGAAAGTATTCAAG
385 AACATCCGAACTTGTCAAACTTTTACAATTTATTTTATAACTT-AGATTCCAAAAAGTATTCAAG
* *
14610489 ATGATCCATTCTTTCGA-GATATTTTTCGAACATTCCATGCTCAGG-AAATCACATAATTTGATC
449 ATAATCCATTCCTTCGAGGA-ATTTTTCGAACATTCCATGCTC-GGAAAATCACATAATTTGATC
* *
14610552 TAAATAGTTTGTCGTTTTGTAAACAAGTTTTGGTCCTTGAATT
512 TAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
* * * *
14610595 AAAAACTTAATTACTTGAGAATTGGTTCTGTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATT-GTTCT-CCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
14610660 AACTTATTTA
Statistics
Matches: 549, Mismatches: 60, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
554 5 0.01
555 476 0.87
556 68 0.12
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (554 bp):
AAAAACTTATTTACGTGAGAATTGTTCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACT
TTCACGAGTTCTTTTATAACTTAGGTTCCTGAAAGTATTCAAGACGATCCATTCTTTCGAGCAAA
TTTCCAAACAGTCCATGCTCAGGAAATCACATAATTTGGTCAAAATAGTTTGTATTTTTGTAAAC
AAGTTTCGGTACTTGAATTAAAAACTTAGTTACGTGGCAATTGGTTCTCTCTTGGTTCTTGGACG
AACATTCAAACTTCTCAAAAACTTATTTACATAAGAATTATTTCACTCTTAGTTCTTGGACGAAC
TTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTATTTCTCTCTGGGTTCTTGGACGAACATC
CGAACTTGTCAAACTTTTACAATTTATTTTATAACTTAGATTCCAAAAAGTATTCAAGATAATCC
ATTCCTTCGAGGAATTTTTCGAACATTCCATGCTCGGAAAATCACATAATTTGATCTAAATAGTT
TGTCATTTTGTAAACAAGTTTTGGTCCTTAAATT
Found at i:14610697 original size:62 final size:62
Alignment explanation
Indices: 14610595--14610783 Score: 261
Period size: 62 Copynumber: 3.0 Consensus size: 62
14610585 TCCTTGAATT
* * * * *
14610595 AAAAACTTAATTACTTGAGAATTGGTTCTGTCTTGGTTCTTGGACGAACTTTCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * *
14610657 AAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGTCAAACTTCCAAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* * * * *
14610719 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
14610781 AAA
1 AAA
14610784 CTTTTACGAT
Statistics
Matches: 111, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 111 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
Found at i:14610698 original size:340 final size:339
Alignment explanation
Indices: 14610040--14612016 Score: 1823
Period size: 340 Copynumber: 5.8 Consensus size: 339
14610030 TCTTTAAATT
* * *
14610040 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* * * * *
14610104 CTTTCACGAGTTCTTTTATAACTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTACTTT-TAG
66 CTTTTACGATTTCTTTTATAACTTCA-GTTCCTGAAAGTATTCAAGATGATCCATT-CTTTCGAG
* * * * *
14610167 CAAATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGT
129 CAATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * * *
14610232 AAGCAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
194 AAACAAGTTTTGGCCT-TGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* * *
14610297 GACGAACTTTCGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGAC
258 GACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
14610362 GAACTTCCAAACTTGTC
323 GAACTTCCAAACTTGTC
* * *
14610379 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACATCGGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* *
14610444 CTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAG-A
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* *
14610508 TATTTTTCGAACATTCCATGCTC-AGGAAATCACATAATTTGATCTAAATAGTTTGTCGTTTTGT
131 -ATTTTTCGAACATTCCATGCTCGA-GAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGT
* * *
14610572 AAACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAGAATTGGTTCTGTCTTGGTTCTTG
194 AAACAAGTTTTGG-CCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTG
* * *
14610637 GACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCTCTTGGTTCTTGGTC
258 GACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGAC
*
14610702 AAACTTCCAAACTTGTC
323 GAACTTCCAAACTTGTC
* *
14610719 AAAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
** * *
14610784 CTTTTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCACTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* * * *
14610849 ATTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAA
131 ATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
* *
14610914 ACAAGTTTTGGCCCTTTCAATT-AAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTTTTG
196 ACAAGTTTTGG-CC-TTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTG
* * * * ****
14610976 GATGAACTTTCGAGCTTTTC--AAAC---TTT-CACGAG-ATCT-TTTAGAACTTAGGTTCCTTA
258 GACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAAT-TGTTTCTCTCTT-GGTT-CTT-
* * * ** *
14611033 AAGAATTCAAGACGATCCATTCCTTTGAGTA
319 --GGA--CGA-AC-TTCCA-AAC-TT--GTC
* * ** * * **
14611064 AATTTCCAAAC--ATTCCACGCTCGAGAA--ATCACATCAT-TTGG-TC----A-AAATAGTTTG
1 AA-----AAACTTATT-TACG-T-GAGAATTGTTTC-TC-TCTTGGTTCTTGGACGAACA-TCCG
* * * * * * *
14611118 -TCATTTTGAAAACAAGTTTT-GGATTGT-TAATTAATAAC-TCAGTTACATG--AGAATT---G
55 AAC-TTGT-CAAAC---TTTTACGATT-TCT--TTTATAACTTCAGTT-CCTGAAAGTATTCAAG
* ** *** ** * ** * * *
14611174 -T--TTC-TCTCTTT-GTTC--TTGGACGAAC-TTCCAAACTTGTCAAA-AAC-TTATTTACGT-
111 ATGATCCAT-TCTTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTT-GGTC
* * * * * ** * ***** *
14611228 GAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTG--TCAAAAACTTATTTACGTG
174 TA-AATAGTTTGTC-ATT--TT-GTAAAC-AAGTTTTGGCCTTGAATTAAAAACTTATTTACGTG
* * * *
14611291 AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGA
233 AGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGA
* * *
14611356 ATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTC
298 ATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTC
* *
14611398 AAAAACTTATTTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
14611463 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
66 CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
* *
14611528 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATAATTTGGTCTAAATAGTTTGT-ATTTTTGTA
131 ATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCA-TTTTGTA
* * *
14611592 AACAAGTTTCGGTCCTTGAATTAAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGCTTCTTGG
195 AACAAGTTTTGG-CCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGG
* * *
14611657 ATGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACG
259 ACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACG
*
14611722 AACTTCCGAACTTGTC
324 AACTTCCAAACTTGTC
*
14611738 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
* ** * * * *
14611803 CTTTTACGATTTC-TTTATAACTT-TGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGA
66 CTTTTACGATTTCTTTTATAACTTCAG-TTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGC
* * *
14611866 AATTTTTCGAACATTCCATACTC-AGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGT
130 AATTTTTCGAACATTCCATGCTCGAG-AAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGT
* *
14611930 AAGCAAGTTTTGGCCTTTAAATTAAAAACTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTT
194 AAACAAGTTTTGGCC-TTGAATTAAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTT
*
14611993 GGACGAAATTTCGAACTTGTCAAA
257 GGACGAACTTTCGAACTTGTCAAA
14612017 CTTTCACGAG
Statistics
Matches: 1317, Mismatches: 218, Indels: 207
0.76 0.13 0.12
Matches are distributed among these distances:
328 5 0.00
329 21 0.02
330 18 0.01
331 13 0.01
332 8 0.01
333 14 0.01
334 17 0.01
335 5 0.00
336 7 0.01
337 29 0.02
338 65 0.05
339 242 0.18
340 704 0.53
341 34 0.03
342 29 0.02
343 8 0.01
344 5 0.00
345 17 0.01
346 13 0.01
347 8 0.01
348 13 0.01
349 16 0.01
350 21 0.02
351 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
CTTTTACGATTTCTTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATCCATTCTTTCGAGCA
ATTTTTCGAACATTCCATGCTCGAGAAATCACATAATTTGGTCTAAATAGTTTGTCATTTTGTAA
ACAAGTTTTGGCCTTGAATTAAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGAC
GAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTC
Found at i:14611092 original size:215 final size:215
Alignment explanation
Indices: 14610720--14611214 Score: 591
Period size: 215 Copynumber: 2.3 Consensus size: 215
14610710 AAACTTGTCA
* * *
14610720 AAAACTTATTTACGTAAGAATTGTTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* ** * * * *
14610785 TTTTACGATTTCTTTTATAACTTTGGTTCATGAAAGTATTCAAGATGATCCACTCTTTCGAGCAA
66 TTTCACGAGATCTTTTAGAACTTAGGTTCATGAAAGAATTCAAGACGATCCACTCTTTCGAGCAA
* * * * * ** * * *
14610850 TTTTTCGAACATTCCATGCTCGAGAAATCGCATAATTTGGTCTTAATATTTTGTCTTTTTGTAAA
131 ATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAA
*
14610915 CAAGTTTTGGCCCTT-TCAATT
196 CAAGTTTTGG--ATTGTCAATT
* * * * * *
14610936 AAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTTTTGGATGAACTTTCGAGCTTTTCAAAC
1 AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
* * * *
14611000 TTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTT-GAGTA
66 TTTCACGAGATCTTTTAGAACTTAGGTTCATGAAAGAATTCAAGACGATCCACT-CTTTCGAGCA
*
14611064 AATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAA
130 AATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAA
*
14611129 ACAAGTTTTGGATTGTTAATT
195 ACAAGTTTTGGATTGTCAATT
* * * * *
14611150 AATAACTCAGTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AA-AACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAA
14611215 AACTTATTTA
Statistics
Matches: 231, Mismatches: 44, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
213 2 0.01
214 7 0.03
215 164 0.71
216 58 0.25
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.39
Consensus pattern (215 bp):
AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAC
TTTCACGAGATCTTTTAGAACTTAGGTTCATGAAAGAATTCAAGACGATCCACTCTTTCGAGCAA
ATTTCCAAACATTCCACGCTCGAGAAATCACATAATTTGGTCAAAATAGTTTGTCATTTTGAAAA
CAAGTTTTGGATTGTCAATT
Found at i:14611114 original size:895 final size:895
Alignment explanation
Indices: 14608282--14611338 Score: 3865
Period size: 895 Copynumber: 3.5 Consensus size: 895
14608272 CGAACTTGTC
* * * * * *
14608282 AAAAA-TTATTTACGTAAGAATTGTTTCTCTCTTGCTACTTGGACGAACATCCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* ** * * ** * ** *
14608346 CTTTTACGATTTCTTTTATAACTTCGGTTCCAAAAAGTATTCAAGATAATCCATTCCTTCT-AG-
65 CTTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTACTT-TGAGC
* * * ** * * * **
14608409 AAGTTTTTCGAACATTCCATACTCG-GAAAATCCCATCGTTCGGTGTAAATAGTTTGTCATTTTG
129 AA-ATTTCCAAACATTCCACGCTCGAG-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
* * * *
14608473 TAAACAAGTTTTGGACTGTTTATTATTAACTCAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
192 AAAACAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * *
14608538 GGATGAACTTTCGAACTTCTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGA
257 GGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
14608603 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
322 CGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGA
* * * * *
14608668 ACATCCGAACTTTTGAAACTTTTACGATTTCTTTTATAACTTC-GATTCTTGAAAGTATCCAAGA
387 ACATCCGAACTTGTCAAACTTTTACGATTTATTTTATAACTTCAG-TTCCTGAAAGTATTCAAGA
* * * *
14608732 TGATCCATTCTTTCGAGCAATTTTTTGAACA-TCCAATGCTCGGGAAATCGCATAATTTGGTCTA
451 TGATCCATTCTTTCGAGCAATTTTTCGAACAGTCC-ATGCTCAGGAAATCACATAATTTTGTCTA
* * * **
14608796 AATAGTTTGT-CTTTTGTAAACAAGTTTCAGTCCTTGAATT-AAAATTTTTTTACGTGGCAATTG
515 AATAGTTTGTAGTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTAATTACGTGGCAATTG
* * * * * *
14608859 GATCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAACTTATTTACATGAGTACTGTTT
580 GTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTACATAAGTATTATTT
* * * *
14608924 CACTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAAA-TTATTTACGTAAGAATTGTTTCTC
645 CACTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTC
* * * *
14608988 TCTTGCTACTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTC
710 TCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTTGATTC
* * * *
14609053 CAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATTTTTCGAACATTCCATACTCGGAAAATC
775 CAAAAAGTATTCAAGATAATCCACTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAAATC
** * * * *
14609118 CCATCGTTCGGTGTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGACTGTT-TATT
840 CCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCT-TTAAATT
** * * * *
14609174 ATTAACTCAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAACTTTCGAACTTGTC--A
* **** * * * *
14609239 AACTTATTTACATGAGAAT-TGTTTCTCTCTT-GGTT-CTT---GGA--CGA-AC-TTCCA-AAC
63 AAC---TTT-CACGAG-ATCT-TTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTAC
* * * * * *
14609293 -TTG-TC-AA-----AAACTTATT-TACG-T-GAG-AAT----T-GTTT-CTC----T-CTTGGT
122 TTTGAGCAAATTTCCAAAC--ATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGT
* * * **** * **
14609335 --TCTTG--GACGAACTTCCAAACTTGTCAA--AA-ACTTAT--TTACGTGAGAATTGTTTCTCT
185 CATTTTGAAAAC-AAGTTTTGGAC-TGTTAATTAATAACT-TAGTTACGTGAGAATTGTTTCTCT
*
14609391 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATGTACGTGAGAATTGTTTCTCTCTT
247 CTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
* * * * * *
14609456 GGTTTTTGGACTAACATCCTAACTTGTCAAAAACTTATTTACGTAAGAATTTTTTCTCTCTTGGT
312 GGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGT
* * **
14609521 TCTTGAACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGGTTCCTGAAAG
377 TCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTATTTTATAACTTCAGTTCCTGAAAG
*
14609586 TATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAGTCCATGCTCAGGAAATCGCATAAT
442 TATTCAAGATGATCCATTCTTTCGAGCAATTTTTCGAACAGTCCATGCTCAGGAAATCACATAAT
* *
14609651 TTTGTCTAAATAGTTTGTATTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTATTTACGT
507 TTTGTCTAAATAGTTTGTAGTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTAATTACGT
*
14609716 GGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAGACTTATTTACATAAG
572 GGCAATTGGTTCTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTACATAAG
* * *
14609781 TATTATTTCACTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTATTTACGTGAGAAT
637 TATTATTTCACTCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAAT
*
14609846 TATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAAC
702 TATTTCTCTCTTGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAAC
* * *
14609911 TTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGGAATTTTTCGAACATTCCATGCTC
767 TTTGATTCCAAAAAGTATTCAAGATAATCCACTCCTTCGAGCAATTTTTCGAACATTCCATGCTC
* *
14609976 GGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTAAATT
832 GGAAAATCCCATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
14610040 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* * * *
14610105 TTTCACGAGTTCTTTTATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTACTTTTAGCAA
66 TTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTACTTTGAGCAA
* * *
14610170 ATTTCCAAACATTCCATGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAG
131 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAA
14610235 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
* * * *
14610300 GAACTTTCGAACTTCTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGACGAA
261 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
* *
14610365 CTTCCAAACTTGTCAAAAACTTATTTATGTGAGAATTGTTTCTCTCTGGGTTCTTGGACGAACAT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
* *
14610430 CGGAACTTGTCAAACTTTTATGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATC
391 CCGAACTTGTCAAACTTTTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATC
*
14610495 CATTCTTTCGAG-ATATTTTTCGAACATTCCATGCTCAGGAAATCACATAA-TTTGATCTAAATA
456 CATTCTTTCGAGCA-ATTTTTCGAACAGTCCATGCTCAGGAAATCACATAATTTTG-TCTAAATA
* * *
14610558 GTTTGTCGTTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTAATTACTTGAG-AATTGGTT
519 GTTTGTAGTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTAATTACGTG-GCAATTGGTT
* * * * *
14610622 CTGTCTTGGTTCTTGGACGAACTTTCAAACTTGTCAAAAACTTATTTACATGAGTATTGTTTCTC
583 CTCTCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTACATAAGTATTATTTCAC
* *
14610687 TCTTGGTTCTTGGTCAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTGTTTCTCTCT
648 TCTTGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCT
* *
14610752 TGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACGATTTCTTTTATAACTTTGGTT-CAT
713 TGCTTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTTGATTCCA-
* * * *
14610816 GAAAGTATTCAAGATGATCCACTCTTTCGAGCAATTTTTCGAACATTCCATGCTC-GAGAAATCG
777 AAAAGTATTCAAGATAATCCACTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGA-AAATCC
* * * *
14610880 CATAATTTGGTCTTAATATTTTGTCTTTTTGTAAACAAGTTTTGGCCCTTTCAATT
841 CATAATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-CCTTTAAATT
* * * *
14610936 -AAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTTTTGGATGAACTTTCGAGCTTTTCAAAC
1 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
* *
14611000 TTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTCCTTTGAGTAA
66 TTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTACTTTGAGCAA
14611065 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAA
131 ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAA
* * * *
14611130 CAAGTTTTGGATTGTTAATTAATAACTCAGTTACATGAGAATTGTTTCTCTCTTTGTTCTTGGAC
196 CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
14611195 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
261 GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
14611260 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT
326 CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
*
14611325 CCAAACTTGTCAAA
391 CCGAACTTGTCAAA
14611339 AACTTATTTA
Statistics
Matches: 1884, Mismatches: 209, Indels: 141
0.84 0.09 0.06
Matches are distributed among these distances:
858 8 0.00
859 10 0.01
860 6 0.00
863 278 0.15
864 34 0.02
865 155 0.08
866 226 0.12
867 12 0.01
868 2 0.00
869 6 0.00
870 2 0.00
871 2 0.00
874 4 0.00
875 5 0.00
876 6 0.00
877 3 0.00
878 3 0.00
880 3 0.00
881 1 0.00
882 6 0.00
883 4 0.00
884 5 0.00
888 3 0.00
889 5 0.00
890 1 0.00
891 13 0.01
892 10 0.01
893 54 0.03
894 11 0.01
895 977 0.52
896 9 0.00
898 4 0.00
899 8 0.00
900 8 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (895 bp):
AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAAC
TTTCACGAGATCTTTTAGAACTTAGGTTCCTTAAAGAATTCAAGACGATCCATTACTTTGAGCAA
ATTTCCAAACATTCCACGCTCGAGAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGAAAA
CAAGTTTTGGACTGTTAATTAATAACTTAGTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGAC
GAACTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CTTCCAAACTTGTCAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACAT
CCGAACTTGTCAAACTTTTACGATTTATTTTATAACTTCAGTTCCTGAAAGTATTCAAGATGATC
CATTCTTTCGAGCAATTTTTCGAACAGTCCATGCTCAGGAAATCACATAATTTTGTCTAAATAGT
TTGTAGTTTTGTAAACAAGTTTCGGTCCTTGAATTAAAAACTTAATTACGTGGCAATTGGTTCTC
TCTTGGTTCTTGGACGAACATTCAAACTTGTCAAAAACTTATTTACATAAGTATTATTTCACTCT
TGGTTCTTGGACAAACTTCCAAACTTGTCAAAAACTTATTTACGTAAGAATTATTTCTCTCTTGC
TTCTTGGACGAACATCCGAACTTGTCAAACTTTTACAATTTCTTTTATAACTTTGATTCCAAAAA
GTATTCAAGATAATCCACTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGAAAATCCCATAA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTTTAAATT
Found at i:14611262 original size:62 final size:62
Alignment explanation
Indices: 14611160--14611462 Score: 525
Period size: 62 Copynumber: 4.9 Consensus size: 62
14611150 AATAACTCAG
* *
14611160 TTACATGAGAATTGTTTCTCTCTTTGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
14611222 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
14611284 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * *
14611346 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACTAACATCCTAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
* * * *
14611408 TTACGTAAGAATTTTTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTCAAA
1 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
14611463 CTTTTACGAT
Statistics
Matches: 232, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 232 1.00
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (62 bp):
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
Found at i:14611716 original size:62 final size:62
Alignment explanation
Indices: 14611614--14611802 Score: 288
Period size: 62 Copynumber: 3.0 Consensus size: 62
14611604 TCCTTGAATT
* * * * *
14611614 AAAAACTTATTTATGTGAGAATTGGTTCTCTCTTGCTTCTTGGATGAACTTTCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* * *
14611676 AAAAACTTATTTACATGAGTATTGTTTCTCGCTTGGTTCTTGGACGAACTTCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
* *
14611738 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACATCCGAACTTGTC
1 AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
14611800 AAA
1 AAA
14611803 CTTTTACGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 114 1.00
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (62 bp):
AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTC
Found at i:14612119 original size:215 final size:215
Alignment explanation
Indices: 14611738--14612232 Score: 644
Period size: 215 Copynumber: 2.3 Consensus size: 215
14611728 CGAACTTGTC
*
14611738 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACA-TCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA-ATTTCGAACTTGTCAA
* * * *
14611802 ACTTTTACGATTTCTTTATAACTTTGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAA
65 ACTTTCACGAGTTCTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAA
* * * *
14611867 ATTTTTCGAACATTCCATACTCAGAAAATCCCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
130 ATTTTCCAAACATTCCATACTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAA
* *
14611932 GCAAGTTTTGGCCT-TTAAATT
195 ACAAGTTTTGGACTGTT-AATT
* *
14611953 AAAAACTTATTTACGTGAGAATTGTATCTC-CTTGGTTCTTGGACGAAATTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAA
* ** *
14612017 CTTTCACGAGTTCTTTAATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT-TGAGC
66 CTTTCACGAGTTCTTT-ATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCT-AG-
* * * *
14612081 AAA-TTTCCAAACGTTCTATGCTC-GAGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTG
128 AAATTTTCCAAACATTCCATACTCAGA-AAATCACATCATTTGGTCAAAATAGTTTGTCATTTTG
14612144 TAAACAAGTTTTGGACTGTTAATT
192 TAAACAAGTTTTGGACTGTTAATT
** * * *
14612168 ATTAACTCAGTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGAC-AAACTTTCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAA-TTTCGAACTTGTCAA
14612232 A
65 A
14612233 AACTTATTTA
Statistics
Matches: 245, Mismatches: 27, Indels: 15
0.85 0.09 0.05
Matches are distributed among these distances:
213 1 0.00
214 48 0.20
215 161 0.66
216 35 0.14
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
AAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAA
CTTTCACGAGTTCTTTATAACTTAGATTCCAAAAAGTATTCAAGACAATCCATTCCTTCTAGAAA
TTTTCCAAACATTCCATACTCAGAAAATCACATCATTTGGTCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTTAATT
Found at i:14612280 original size:62 final size:62
Alignment explanation
Indices: 14612178--14612356 Score: 270
Period size: 62 Copynumber: 2.9 Consensus size: 62
14612168 ATTAACTCAG
* * *
14612178 TTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGACAAACTTTCGAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* * *
14612240 TTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAAACTTAT
1 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
* *
14612302 TTATGTGAGAATTATTTCTCTCTTGATTCTTGGACGAA-TATCCGAACTTGTCAAA
1 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT-TCCGAACTTGTCAAA
14612357 CTTTTATGAT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
61 1 0.01
62 105 0.99
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (62 bp):
TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAAAACTTAT
Found at i:14612608 original size:340 final size:339
Alignment explanation
Indices: 14611953--14612634 Score: 942
Period size: 340 Copynumber: 2.0 Consensus size: 339
14611943 CCTTTAAATT
* * *
14611953 AAAAACTTATTTACGTGAGAATTGTATCTCCTTGGTTCTTGGACGAAATTTCGAACTTGTCAAAC
1 AAAAACTTATTTACGTGAGAATTATATCTCCTTGATTCTTGGACGAAATTCCGAACTTGTCAAAC
* *
14612018 TTTCACGAGTTCTTTAATAACTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
66 TTTCACGAGTTCTTTAATAACTTAGATTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
* * * * *
14612083 ATTTCCAAACGTTCTATGCTCGAGAAATCACATCATTTGGTCAAAATTGTTTGTCATTTTGTAAA
131 ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAAA
* ** *
14612148 CAAGTTTTGGACTGTTAATTATTAACTCAGTTACGTGAGAATTTTTTCTCTCTTGGTTCTTGGAC
196 CAAGTTTTGGACTGTGAATTAAAAACTCAGTTACGTGAGAATTTGTTCTCTCTTGGTTCTTGGAC
* *
14612213 AAACTTTCGAACTTGTCAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
261 AAACTTTCGAACTTGTCAAAAACTTATATACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
*
14612278 CTTCCAAACTTGTC
326 CATCCAAACTTGTC
* *
14612292 AAAAACTTATTTATGTGAGAATTATTTCTCTCTTGATTCTTGGACG-AATATCCGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTATATCTC-CTTGATTCTTGGACGAAAT-TCCGAACTTGTCAA
* * * * * *
14612356 ACTTTTATGATTTC-TTATATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATT-CTTTCTA
64 ACTTTCACGAGTTCTTTA-ATAACTTAGATTCCTGAAAGTATTCAAGACGATCCATTCCTTT-GA
* * * * * *
14612419 GCAATTTTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTG
127 GCAAATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTG
* * * *
14612484 TAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAG-ATTTGGTTCTCTCTTGTTTC
192 TAAACAAGTTTTGG-ACTGTGAATTAAAAACTCAGTTACGTGAGAATTT-GTTCTCTCTTGGTTC
* *
14612547 TTGGACGAACTTTCGAACTTGTCAAAAACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTG
255 TTGGACAAACTTTCGAACTTGTCAAAAACTTATATACATAAGAATTGTTTCTCTCTTGGTTCTTG
14612612 GACGAACATCCAAACTTGTC
320 GACGAACATCCAAACTTGTC
14612632 AAA
1 AAA
14612635 CTTTTAGGAT
Statistics
Matches: 300, Mismatches: 37, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
339 41 0.14
340 257 0.86
341 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (339 bp):
AAAAACTTATTTACGTGAGAATTATATCTCCTTGATTCTTGGACGAAATTCCGAACTTGTCAAAC
TTTCACGAGTTCTTTAATAACTTAGATTCCTGAAAGTATTCAAGACGATCCATTCCTTTGAGCAA
ATTTCCAAACATTCCATGCTCGAGAAATCACATAATTTGATCAAAATAGTTTGTCATTTTGTAAA
CAAGTTTTGGACTGTGAATTAAAAACTCAGTTACGTGAGAATTTGTTCTCTCTTGGTTCTTGGAC
AAACTTTCGAACTTGTCAAAAACTTATATACATAAGAATTGTTTCTCTCTTGGTTCTTGGACGAA
CATCCAAACTTGTC
Found at i:14612610 original size:62 final size:62
Alignment explanation
Indices: 14612508--14612634 Score: 182
Period size: 62 Copynumber: 2.0 Consensus size: 62
14612498 TCCTTGAATT
* * * * * * *
14612508 AAAAACTTATTTACGTGAGATTTGGTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTC
1 AAAAACTTATATACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
*
14612570 AAAAACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
1 AAAAACTTATATACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
14612632 AAA
1 AAA
14612635 CTTTTAGGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (62 bp):
AAAAACTTATATACGTAAGAATTGGTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTC
Found at i:14612749 original size:278 final size:278
Alignment explanation
Indices: 14612230--14612849 Score: 877
Period size: 278 Copynumber: 2.2 Consensus size: 278
14612220 CGAACTTGTC
* * * *
14612230 AAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* * * * *
14612295 AACTTATTTATGTGAGAATTATTTCTCTCTTGATTCTTGGACGAATATCCGAACTTGTCAAACTT
66 AACTTATATACGTAAGAATTATTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAACTT
* ** * * *
14612360 TTATGATTTCTTATATAACTTCGATTCCTGAAAGTATTCAAGATGATCCATTCTTTCTAGCAATT
131 TTAGGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
* * * *
14612425 TTTCGAACATTCCATGCTCGGGAAATCACATAATTTGATCTAAATAGTTTGTCTTTTTGTAAACA
196 TTTCGAACATTCCACGCTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGAAAACA
*
14612490 AGTTTTGGTCCTTGAATT
261 AGTTTTGGTCCTTAAATT
* *
14612508 AAAAACTTATTTACGTGAGATTTGGTTCTCTCTTGTTTCTTGGACGAACTTTCGAACTTGTCAAA
1 AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
* *
14612573 AACTTATATACGTAAGAATTGTTTCTCTCTTGGTTCTTGGACGAACATCCAAACTTGTCAAACTT
66 AACTTATATACGTAAGAATTATTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAACTT
* *
14612638 TTAGGATTTCTTTTATAACTTCGTTTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAAAT
131 TTAGGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAG-AAAT
* * * * *
14612703 TTTT-GAACATTCCACGCTCGGAAAATCCCATCATTTGGTGTAAATAGTTTGTCATTTTGAAAAT
195 TTTTCGAACATTCCACGCTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGAAAAC
*
14612767 AAGTTTTGGTCTTTAAATT
260 AAGTTTTGGTCCTTAAATT
* ** *
14612786 AAAAAGTTATTTACGTGAGAATT-GTATCTC-CTTGGTTCTCAGACGAACTTTTGAACTTGTCAA
1 AAAAACTTATTTACGTGAGAATTGGT-TCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAA
14612849 A
65 A
14612850 CTTTCATGAG
Statistics
Matches: 302, Mismatches: 38, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
277 32 0.11
278 263 0.87
279 7 0.02
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (278 bp):
AAAAACTTATTTACGTGAGAATTGGTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAA
AACTTATATACGTAAGAATTATTTCTCTCTTGATTCTTGGACGAACATCCAAACTTGTCAAACTT
TTAGGATTTCTTATATAACTTCGATTCCAAAAAGTATTCAAGATAATCCATTCCTTCTAGAAATT
TTTCGAACATTCCACGCTCGGAAAATCACATAATTTGATCTAAATAGTTTGTCATTTTGAAAACA
AGTTTTGGTCCTTAAATT
Found at i:14615005 original size:17 final size:17
Alignment explanation
Indices: 14614967--14615005 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14614957 AGGTGAAGAA
* *
14614967 CTTGTTCGTTGAGAGTT
1 CTTGTTCGTAGAGAATT
*
14614984 ATTGTTCGTAGAGAATT
1 CTTGTTCGTAGAGAATT
14615001 CTTGT
1 CTTGT
14615006 CAAGGTGGAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.46
Consensus pattern (17 bp):
CTTGTTCGTAGAGAATT
Found at i:14622660 original size:172 final size:173
Alignment explanation
Indices: 14622364--14622697 Score: 499
Period size: 172 Copynumber: 1.9 Consensus size: 173
14622354 TTGTATGCTA
* * *
14622364 AAATTAAATTATTTTGAGGTATTGTTGTTTTTGGATTATGCAACATCCAAGCTATTTTCAATATC
1 AAATTAAATTATTTTAAGGTATTGTTGTTTCTGGATTATGCAACAT---AGCTATTTTCAACATC
* * * *
14622429 TTCTATTCACACTTGACTTTTTAGGCAATAGTAGTTTGTTGATAATCCCACATTGAAGGGCTGTT
63 TTCTATGCACACTTGACCTTTTAGGCAATAGTAGTTGGTTGATAATCCCACACTGAAGGGCTGTT
14622494 ATCTCATATTCCAGGAATATCATGGCATCATTCAGTAATTTATATT
128 ATCTCATATTCCAGGAATATCATGGCATCATTCAGTAATTTATATT
* * *
14622540 AAATTAAATTATTTTAAGGTATTGTTGTTTCTGGATTGTGCAACAT-GCTGTTTTCAGCATCTTC
1 AAATTAAATTATTTTAAGGTATTGTTGTTTCTGGATTATGCAACATAGCTATTTTCAACATCTTC
* * *
14622604 TATGCACACTTGACCTTTTAGGCACTATTAGTTGGTTGATAATCCCACACTGAAGGGCTGTTGTC
66 TATGCACACTTGACCTTTTAGGCAATAGTAGTTGGTTGATAATCCCACACTGAAGGGCTGTTATC
* *
14622669 TCATGTTCCAGGAATATCTTGGCATCATT
131 TCATATTCCAGGAATATCATGGCATCATT
14622698 TCGGCATAGT
Statistics
Matches: 143, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
172 100 0.70
176 43 0.30
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (173 bp):
AAATTAAATTATTTTAAGGTATTGTTGTTTCTGGATTATGCAACATAGCTATTTTCAACATCTTC
TATGCACACTTGACCTTTTAGGCAATAGTAGTTGGTTGATAATCCCACACTGAAGGGCTGTTATC
TCATATTCCAGGAATATCATGGCATCATTCAGTAATTTATATT
Found at i:14635221 original size:13 final size:13
Alignment explanation
Indices: 14635180--14635221 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
14635170 AATTTGTATT
14635180 ATAAT-TTAT-AA
1 ATAATATTATAAA
* *
14635191 ATAAAATTAAAAA
1 ATAATATTATAAA
14635204 ATAATATTATAAA
1 ATAATATTATAAA
14635217 ATAAT
1 ATAAT
14635222 TCAATAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 4 0.16
12 3 0.12
13 18 0.72
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAATATTATAAA
Found at i:14635252 original size:19 final size:19
Alignment explanation
Indices: 14635225--14635282 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
14635215 AAATAATTCA
*
14635225 ATAATTTACGTTATAAATT
1 ATAAATTACGTTATAAATT
*
14635244 ATAAATTAC-TTCAAAAATT
1 ATAAATTACGTT-ATAAATT
* * *
14635263 ATAAATAATGTCATAAATT
1 ATAAATTACGTTATAAATT
14635282 A
1 A
14635283 AAACTTCAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
18 2 0.06
19 28 0.90
20 1 0.03
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (19 bp):
ATAAATTACGTTATAAATT
Found at i:14645640 original size:31 final size:31
Alignment explanation
Indices: 14645545--14645641 Score: 131
Period size: 31 Copynumber: 3.1 Consensus size: 31
14645535 AATAGCCTAG
* * * *
14645545 TGACTTAAATAAAAACTTTTGAATACTTCAG
1 TGACTTAAATGAAAACTTTCGAATAGTTCAA
*
14645576 TGACTTAAATGAAAACTTTCGAATGGTTCAA
1 TGACTTAAATGAAAACTTTCGAATAGTTCAA
* *
14645607 TGATTTAAATGAAAACTTTCGAATAGTTTAA
1 TGACTTAAATGAAAACTTTCGAATAGTTCAA
14645638 TGAC
1 TGAC
14645642 AAAATTTTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 57 1.00
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (31 bp):
TGACTTAAATGAAAACTTTCGAATAGTTCAA
Found at i:14647700 original size:23 final size:23
Alignment explanation
Indices: 14647674--14647727 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
14647664 TTAGTGCGCT
14647674 TACTGTTTTGCACTGTGTGTGCC
1 TACTGTTTTGCACTGTGTGTGCC
* *
14647697 TACTGATTTGCACTGTGTGTGCT
1 TACTGTTTTGCACTGTGTGTGCC
14647720 TACTGTTT
1 TACTGTTT
14647728 CCCCAGCACT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (23 bp):
TACTGTTTTGCACTGTGTGTGCC
Found at i:14648883 original size:40 final size:40
Alignment explanation
Indices: 14648824--14648934 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
14648814 CTGACACATT
* *
14648824 GCAGTGTTTACAATTTCACTGATAGTTCAGTTG-TAATCTC
1 GCAGTGTTTACAGTGTCACTGATAGTTCAGTTGAT-ATCTC
** * * *
14648864 GCAGTGTTTACAGTGTCACTGCCAGTTCGGTTGATATTTT
1 GCAGTGTTTACAGTGTCACTGATAGTTCAGTTGATATCTC
14648904 GCAGTGTTTACAGTGTCACT-ACTAGTTCAGT
1 GCAGTGTTTACAGTGTCACTGA-TAGTTCAGT
14648935 AAATATTCTC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 58 0.98
41 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (40 bp):
GCAGTGTTTACAGTGTCACTGATAGTTCAGTTGATATCTC
Found at i:14650160 original size:21 final size:21
Alignment explanation
Indices: 14650096--14650150 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
14650086 TGCAGATTTG
**
14650096 TACCGATACAAGTGACAATTC
1 TACCGATACAAGTGACTCTTC
14650117 TACCGATACAAGTGACTCTTC
1 TACCGATACAAGTGACTCTTC
14650138 TACCGATACAAGT
1 TACCGATACAAGT
14650151 CTTATCTCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (21 bp):
TACCGATACAAGTGACTCTTC
Found at i:14654223 original size:80 final size:79
Alignment explanation
Indices: 14654048--14654223 Score: 235
Period size: 79 Copynumber: 2.2 Consensus size: 79
14654038 ACTGACTAAT
* * * **
14654048 GCTGGGCACACATTTGCGGCTTATCCACTAGGCACTAGGTGTTAGGATTTGACGGATATTGTTGG
1 GCTGGGCTCACATTTGCAGCTTACCCACTAGGCACTAGGTGCCAGGATTTGACGGATATTGTTGG
*
14654113 TTAATCCAATTAGA
66 TTAATCCAACTAGA
* * * * *
14654127 GCTGGACTCACTTTTGCAGTTTACCCGCTAGGCACTAGGTGCCAGGATTTGATGGATATTTGTTG
1 GCTGGGCTCACATTTGCAGCTTACCCACTAGGCACTAGGTGCCAGGATTTGACGGATA-TTGTTG
14654192 GTTAATCCAACTAGA
65 GTTAATCCAACTAGA
*
14654207 GCTGGGCTCACCTTTGC
1 GCTGGGCTCACATTTGC
14654224 GGTGTATCTA
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
79 48 0.58
80 35 0.42
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (79 bp):
GCTGGGCTCACATTTGCAGCTTACCCACTAGGCACTAGGTGCCAGGATTTGACGGATATTGTTGG
TTAATCCAACTAGA
Found at i:14654238 original size:80 final size:78
Alignment explanation
Indices: 14654048--14654250 Score: 244
Period size: 80 Copynumber: 2.6 Consensus size: 78
14654038 ACTGACTAAT
* **
14654048 GCTGGGCACACATTTGCGGCTTATCCACTAGGCACTAGGTGTTAGGATTTGACGGATATTGTTGG
1 GCTGGGCTCACATTTGCGG-TTATCCACTAGGCACTAGGTGCCAGGATTTGACGGATATTGTTGG
*
14654113 TTAATCCAATTAGA
65 TTAATCCAACTAGA
* * * * * *
14654127 GCTGGACTCACTTTTGCAGTTTACCCGCTAGGCACTAGGTGCCAGGATTTGATGGATATTTGTTG
1 GCTGGGCTCACATTTGC-GGTTATCCACTAGGCACTAGGTGCCAGGATTTGACGGATA-TTGTTG
14654192 GTTAATCCAACTAGA
64 GTTAATCCAACTAGA
* * * *
14654207 GCTGGGCTCACCTTTGCGGTGTATCTACTAGGTACTGGGTGCCA
1 GCTGGGCTCACATTTGCGGT-TATCCACTAGGCACTAGGTGCCA
14654251 AAATCATCGA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 49 0.48
80 54 0.52
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (78 bp):
GCTGGGCTCACATTTGCGGTTATCCACTAGGCACTAGGTGCCAGGATTTGACGGATATTGTTGGT
TAATCCAACTAGA
Found at i:14661808 original size:21 final size:21
Alignment explanation
Indices: 14661784--14661834 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
14661774 GATTTGTACT
*
14661784 GATACAAGTGACAGTTCTACC
1 GATACAAGTGACACTTCTACC
*
14661805 GATACAAGTGACTCTTCTACC
1 GATACAAGTGACACTTCTACC
14661826 GATACAAGT
1 GATACAAGT
14661835 CTTACCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (21 bp):
GATACAAGTGACACTTCTACC
Found at i:14661844 original size:21 final size:20
Alignment explanation
Indices: 14661799--14661851 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
14661789 AAGTGACAGT
*
14661799 TCTACCGATACAAGTGACTCT
1 TCTACCGATACAAGT-ACTCC
14661820 TCTACCGATACAAGT-CTTACC
1 TCTACCGATACAAGTAC-T-CC
14661841 TCTACCGATAC
1 TCTACCGATAC
14661852 TAAAAACTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 27 0.93
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.28
Consensus pattern (20 bp):
TCTACCGATACAAGTACTCC
Found at i:14661913 original size:23 final size:23
Alignment explanation
Indices: 14661883--14661930 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
14661873 AATCTTACCT
*
14661883 TGTTACTTCTACCGATACAAGTA
1 TGTTACTTCAACCGATACAAGTA
*
14661906 TGTTACTTCAACTGATACAAGTA
1 TGTTACTTCAACCGATACAAGTA
14661929 TG
1 TG
14661931 CAAACTACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (23 bp):
TGTTACTTCAACCGATACAAGTA
Found at i:14682030 original size:24 final size:24
Alignment explanation
Indices: 14681997--14682051 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
14681987 GTTAAGAGTA
14681997 AAAATTGTCAATGCAA-ATGTAATAC
1 AAAA-TGTCAATGCAATA-GTAATAC
* *
14682022 AAAATGTCAGTGCAATAGTAATAT
1 AAAATGTCAATGCAATAGTAATAC
14682046 AAAATG
1 AAAATG
14682052 AATTTGATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.27
Consensus pattern (24 bp):
AAAATGTCAATGCAATAGTAATAC
Found at i:14690002 original size:22 final size:22
Alignment explanation
Indices: 14689974--14690016 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14689964 TGTTTCTTTA
14689974 ACAATTAACCTTGATTGCATTG
1 ACAATTAACCTTGATTGCATTG
14689996 ACAATTAACCTTGATTGCATT
1 ACAATTAACCTTGATTGCATT
14690017 AATAGTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (22 bp):
ACAATTAACCTTGATTGCATTG
Found at i:14695908 original size:15 final size:15
Alignment explanation
Indices: 14695888--14695922 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14695878 TTTACATTTT
*
14695888 CTTTTATTTGTTTCA
1 CTTTTACTTGTTTCA
14695903 CTTTTACTTGTTTCA
1 CTTTTACTTGTTTCA
14695918 -TTTTA
1 CTTTTA
14695923 AAATTCTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.14, C:0.14, G:0.06, T:0.66
Consensus pattern (15 bp):
CTTTTACTTGTTTCA
Found at i:14696886 original size:18 final size:18
Alignment explanation
Indices: 14696859--14696917 Score: 55
Period size: 21 Copynumber: 3.0 Consensus size: 18
14696849 CCCTAATTAG
*
14696859 TATAACATAATTATTTAA
1 TATAAAATAATTATTTAA
14696877 TATAAAATAATTTATTTCTAA
1 TATAAAATAA-TTA-TT-TAA
*
14696898 TATACATATAATCTATTTAA
1 TATA-AAATAAT-TATTTAA
14696918 CACAAATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
18 9 0.26
19 3 0.09
20 5 0.15
21 10 0.29
22 7 0.21
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (18 bp):
TATAAAATAATTATTTAA
Found at i:14696914 original size:22 final size:21
Alignment explanation
Indices: 14696859--14696915 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
14696849 CCCTAATTAG
*
14696859 TATAACATAAT-TA-TT-TAA
1 TATAAAATAATCTATTTCTAA
*
14696877 TATAAAATAATTTATTTCTAA
1 TATAAAATAATCTATTTCTAA
*
14696898 TATACATATAATCTATTT
1 TATA-AAATAATCTATTT
14696916 AACACAAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 10 0.31
19 2 0.06
20 2 0.06
21 7 0.22
22 11 0.34
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (21 bp):
TATAAAATAATCTATTTCTAA
Found at i:14696954 original size:19 final size:20
Alignment explanation
Indices: 14696924--14696962 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
14696914 TTAACACAAA
*
14696924 TATAATTTTAATTTATATTT
1 TATAATTTTAATTTAAATTT
14696944 TATAA-TTTAATTTAAATTT
1 TATAATTTTAATTTAAATTT
14696963 ATTTTCAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TATAATTTTAATTTAAATTT
Found at i:14696955 original size:25 final size:25
Alignment explanation
Indices: 14696926--14696977 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
14696916 AACACAAATA
* *
14696926 TAATTTTAATTTATATTT-TATAATT
1 TAATTTAAATTTAT-TTTCAATAATT
14696951 TAATTTAAATTTATTTTCAATAATT
1 TAATTTAAATTTATTTTCAATAATT
14696976 TA
1 TA
14696978 TTACATACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (25 bp):
TAATTTAAATTTATTTTCAATAATT
Found at i:14698029 original size:80 final size:79
Alignment explanation
Indices: 14697896--14698053 Score: 271
Period size: 80 Copynumber: 2.0 Consensus size: 79
14697886 ACTAATTTCA
* * *
14697896 TTTTAACTCTTGTAGGAAAGCTAGTGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
1 TTTTAACTCTTGTAGAAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
*
14697961 GCATTGCAATTTCTT
66 GCATGGC-ATTTCTT
14697976 TTTTAACTCTTGTAGAAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
1 TTTTAACTCTTGTAGAAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
14698041 GCATGGCATTTCT
66 GCATGGCATTTCT
14698054 CCTTAATGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 6 0.08
80 68 0.92
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (79 bp):
TTTTAACTCTTGTAGAAAAGCCAATGAGTCATGTCTCTTCATTAGGATCTGATGTAGTTGAAAAG
GCATGGCATTTCTT
Found at i:14698547 original size:48 final size:48
Alignment explanation
Indices: 14698495--14698631 Score: 224
Period size: 48 Copynumber: 2.9 Consensus size: 48
14698485 CAAGGCATTT
*
14698495 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCATATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCATATTACTA
* *
14698543 AACAAAGATGCATTTAACAAACAAAACACTTAATGATGCATATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCATATTACTA
14698591 AACAAAGATGCATTTAACAAA-AAAACACTTAATGAA-GCATA
1 AACAAAGATGCATTTAACAAACAAAACACTTAAT-AATGCATA
14698632 AAAAACAATT
Statistics
Matches: 84, Mismatches: 4, Indels: 3
0.92 0.04 0.03
Matches are distributed among these distances:
47 17 0.20
48 67 0.80
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.24
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATGCATATTACTA
Found at i:14705197 original size:48 final size:46
Alignment explanation
Indices: 14705145--14705288 Score: 150
Period size: 48 Copynumber: 3.0 Consensus size: 46
14705135 GTTGATGCAT
*
14705145 TAATGCAAGGCATTTAACAAAGATGCATTTAACAAACAAAACAGTTAA
1 TAATGCAA-G-ATTTAACAAAGATGCATTTAACAAACAAAACACTTAA
*
14705193 TAATGC-AGATTACTAAACAAAGATGCATTTAACAAACAAAACACTTAG
1 TAATGCAAGATT--T-AACAAAGATGCATTTAACAAACAAAACACTTAA
* * *
14705241 TGATACAA-ATTATTAGACAAAGATGCA-TTAACAAAAAAAACACTTAA
1 TAATGCAAGA-T-TTA-ACAAAGATGCATTTAACAAACAAAACACTTAA
14705288 T
1 T
14705289 GAAGCATAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
45 3 0.04
46 1 0.01
47 22 0.27
48 54 0.65
49 2 0.02
50 1 0.01
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.24
Consensus pattern (46 bp):
TAATGCAAGATTTAACAAAGATGCATTTAACAAACAAAACACTTAA
Found at i:14705283 original size:47 final size:48
Alignment explanation
Indices: 14705160--14705288 Score: 179
Period size: 48 Copynumber: 2.7 Consensus size: 48
14705150 CAAGGCATTT
* * *
14705160 AACAAAGATGCATTTAACAAACAAAACAGTTAATAATGCAGATTACTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATACAAATTACTA
* * *
14705208 AACAAAGATGCATTTAACAAACAAAACACTTAGTGATACAAATTATTA
1 AACAAAGATGCATTTAACAAACAAAACACTTAATAATACAAATTACTA
* *
14705256 GACAAAGATGCA-TTAACAAAAAAAACACTTAAT
1 AACAAAGATGCATTTAACAAACAAAACACTTAAT
14705289 GAAGCATAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 19 0.26
48 53 0.74
ACGTcount: A:0.53, C:0.15, G:0.09, T:0.22
Consensus pattern (48 bp):
AACAAAGATGCATTTAACAAACAAAACACTTAATAATACAAATTACTA
Found at i:14715115 original size:38 final size:38
Alignment explanation
Indices: 14715073--14715164 Score: 121
Period size: 38 Copynumber: 2.4 Consensus size: 38
14715063 TAAATACTCC
14715073 TTTATTAGTCGTTCCTATTCAATCTATACCTACCCCCA
1 TTTATTAGTCGTTCCTATTCAATCTATACCTACCCCCA
* * ** * * *
14715111 TTTATTAGACATTTGTCTTCGATCTATACCTACTCCCA
1 TTTATTAGTCGTTCCTATTCAATCTATACCTACCCCCA
14715149 TTTATTAGTCGTTCCT
1 TTTATTAGTCGTTCCT
14715165 CTCTCTCTCT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.22, C:0.27, G:0.08, T:0.43
Consensus pattern (38 bp):
TTTATTAGTCGTTCCTATTCAATCTATACCTACCCCCA
Found at i:14716825 original size:5 final size:5
Alignment explanation
Indices: 14716815--14716886 Score: 58
Period size: 5 Copynumber: 14.4 Consensus size: 5
14716805 TGCTATTTGG
* * *
14716815 AAGAA AAGAA AAGAA AAAAA AAGAA ACA-AA AAGAA AAAAA AACAA AATGAA
1 AAGAA AAGAA AAGAA AAGAA AAGAA A-AGAA AAGAA AAGAA AAGAA AA-GAA
* * *
14716866 ATGAA ATGAA ATGAA AA-AA AA
1 AAGAA AAGAA AAGAA AAGAA AA
14716887 TATCATATTC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
4 5 0.09
5 48 0.84
6 4 0.07
ACGTcount: A:0.79, C:0.03, G:0.12, T:0.06
Consensus pattern (5 bp):
AAGAA
Found at i:14716840 original size:20 final size:20
Alignment explanation
Indices: 14716815--14716871 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
14716805 TGCTATTTGG
14716815 AAGAAAAGAAAAGAAAAAAA
1 AAGAAAAGAAAAGAAAAAAA
14716835 AAGAAACA-AAAAGAAAAAAA
1 AAGAAA-AGAAAAGAAAAAAA
* *
14716855 AACAAAATGAAATGAAA
1 AAGAAAA-GAAAAGAAA
14716872 TGAAATGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.03
20 23 0.72
21 8 0.25
ACGTcount: A:0.81, C:0.04, G:0.12, T:0.04
Consensus pattern (20 bp):
AAGAAAAGAAAAGAAAAAAA
Found at i:14718123 original size:18 final size:18
Alignment explanation
Indices: 14718091--14718125 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14718081 TCTTCTACTA
*
14718091 CTAAATGGAGTCAAAATT
1 CTAAATGGAGACAAAATT
*
14718109 CTAAATGGGGACAAAAT
1 CTAAATGGAGACAAAAT
14718126 GCTCCTAAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.11, G:0.20, T:0.23
Consensus pattern (18 bp):
CTAAATGGAGACAAAATT
Found at i:14721524 original size:74 final size:74
Alignment explanation
Indices: 14721380--14721529 Score: 210
Period size: 74 Copynumber: 2.0 Consensus size: 74
14721370 TGGAGGGATA
* * **
14721380 CAATGTATCATTCAAGAGTCTTCAAGTGAATGGACACATTCATTTATGAATGATGAATGATGGTT
1 CAATGTATCATTCAAGAGTCTTCAAATGAATCGACACATTCATTTATGAATGATGAATGATGCCT
*
14721445 GTTCACATT
66 ATTCACATT
* * * *
14721454 CAATGTTTCATTCAGGAGTTTTTAAATGAATCGACACATTCATTTATGAATGATGAATGATGCCT
1 CAATGTATCATTCAAGAGTCTTCAAATGAATCGACACATTCATTTATGAATGATGAATGATGCCT
*
14721519 ATTCACTTT
66 ATTCACATT
14721528 CA
1 CA
14721530 TTTTGTAAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.37
Consensus pattern (74 bp):
CAATGTATCATTCAAGAGTCTTCAAATGAATCGACACATTCATTTATGAATGATGAATGATGCCT
ATTCACATT
Found at i:14722998 original size:16 final size:16
Alignment explanation
Indices: 14722979--14723027 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
14722969 GTTATTTTTA
14722979 ATTTAATGTATTATTT
1 ATTTAATGTATTATTT
* *
14722995 ATTTATTTTATTATTT
1 ATTTAATGTATTATTT
14723011 -TTTACATGTAATTATTT
1 ATTTA-ATGT-ATTATTT
14723028 TATTAGGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 4 0.15
16 16 0.59
17 7 0.26
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (16 bp):
ATTTAATGTATTATTT
Found at i:14723439 original size:21 final size:21
Alignment explanation
Indices: 14723415--14723462 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
14723405 ATTTTATAAA
14723415 TTTTATAAATAT-T-AATATATT
1 TTTTAT-AATATCTAAATA-ATT
*
14723436 TTTTATTATATCTAAATAATT
1 TTTTATAATATCTAAATAATT
14723457 TTTTAT
1 TTTTAT
14723463 TTTAATAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 4 0.17
21 16 0.67
22 4 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATAATATCTAAATAATT
Found at i:14726168 original size:33 final size:32
Alignment explanation
Indices: 14726121--14726182 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
14726111 GTTACAAAAA
14726121 TTTACAGCTAATGAAAAGATAAAAGCAGGTAAC
1 TTTACAGCTAATGAAAAGA-AAAAGCAGGTAAC
* *
14726154 TTTACAGCTTATGAAAAGACAAAGCAGGT
1 TTTACAGCTAATGAAAAGAAAAAGCAGGT
14726183 GCAATAATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 9 0.33
33 18 0.67
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (32 bp):
TTTACAGCTAATGAAAAGAAAAAGCAGGTAAC
Found at i:14731729 original size:13 final size:13
Alignment explanation
Indices: 14731708--14731740 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
14731698 TTTTATTTGG
*
14731708 AAATCAATATATA
1 AAATAAATATATA
14731721 AAATAAATATATA
1 AAATAAATATATA
14731734 AAA-AAAT
1 AAATAAAT
14731741 GAAGAGTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (13 bp):
AAATAAATATATA
Found at i:14732491 original size:30 final size:28
Alignment explanation
Indices: 14732447--14732513 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
14732437 CTATTTTATT
*
14732447 TAAAAATTCAATTTTGGACCCT-AAACATTC
1 TAAAAATTTAATTTT-GACCCTCAAAC--TC
* *
14732477 TAAAAATTTTATTTTGTCCCTCAAACTC
1 TAAAAATTTAATTTTGACCCTCAAACTC
14732505 TAAAAATTT
1 TAAAAATTT
14732514 GACTTTAACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 11 0.33
29 5 0.15
30 17 0.52
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (28 bp):
TAAAAATTTAATTTTGACCCTCAAACTC
Found at i:14732564 original size:29 final size:29
Alignment explanation
Indices: 14732532--14732614 Score: 71
Period size: 29 Copynumber: 2.8 Consensus size: 29
14732522 CCATCGAACA
14732532 TTTTAAAAATTCGATTTTGA-CCCTTATAC
1 TTTTAAAAATTCGATTTTGACCCCTTA-AC
** **
14732561 TTTTTGAAATTTTATTTTGACCCCTTAAC
1 TTTTAAAAATTCGATTTTGACCCCTTAAC
* *
14732590 TTTCCAAAATTTC-ATTTTTGACCCC
1 TTT-TAAAAATTCGA-TTTTGACCCC
14732615 GTTTTCCCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
29 22 0.52
30 20 0.48
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.47
Consensus pattern (29 bp):
TTTTAAAAATTCGATTTTGACCCCTTAAC
Found at i:14732769 original size:14 final size:14
Alignment explanation
Indices: 14732750--14732791 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
14732740 TCGCATTGCG
*
14732750 TATTTTGTTTATTT
1 TATTTTGTATATTT
14732764 TATTTT-TATATATT
1 TATTTTGTATAT-TT
*
14732778 TATTTTGTGTATTT
1 TATTTTGTATATTT
14732792 ATTACTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 4 0.17
14 16 0.67
15 4 0.17
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (14 bp):
TATTTTGTATATTT
Found at i:14733152 original size:104 final size:105
Alignment explanation
Indices: 14732951--14733258 Score: 352
Period size: 109 Copynumber: 2.9 Consensus size: 105
14732941 AAATATTTTC
* * * * * * *
14732951 AAAATCGAGGTAATGTTC-TTTA-TTTAGGGAACTCAAGAAATTGTGCTCAAACGTATTGGGTAC
1 AAAATTGAGGCAATGTTCTTTTATTTTAGGGAACTCGAGAAATTGTGCCCTAACGTGTTGGGTAT
*
14733014 GATTTTTTCTTTGAATCTAAGTAATTGAATATCCTATTC-A
66 GA-TTTTTCTTTGAACCTAAGTAATTGAATATCCTATTCGA
* * *
14733054 AAAATTGAGGCAATGTTCTTTTATTTTAGGAAAATCGAGGAATTGTGCCCTAACGTGTTGGGTAT
1 AAAATTGAGGCAATGTTCTTTTATTTTAGGGAACTCGAGAAATTGTGCCCTAACGTGTTGGGTAT
*
14733119 GATTTTTCTTTGAACCTAAATAATTGAATATCCTATTCGGA
66 GATTTTTCTTTGAACCTAAGTAATTGAATATCCTATTC-GA
* * * * * * *
14733160 ACCAATTAATGCTCAATATTCTGTTATTTTAGGGGACTCGAAAAATTGTGCCCTAACGTGTTGGG
1 A-AAATTGA-G-GCAATGTTCTTTTATTTTAGGGAACTCGAGAAATTGTGCCCTAACGTGTTGGG
* * *
14733225 TATGATTTTGCCTTGAACCTAAGTAATCGAATAT
63 TATGATTTTTCTTTGAACCTAAGTAATTGAATAT
14733259 TTTGTTTAAA
Statistics
Matches: 172, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
103 16 0.09
104 38 0.22
105 35 0.20
106 2 0.01
107 5 0.03
108 1 0.01
109 75 0.44
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (105 bp):
AAAATTGAGGCAATGTTCTTTTATTTTAGGGAACTCGAGAAATTGTGCCCTAACGTGTTGGGTAT
GATTTTTCTTTGAACCTAAGTAATTGAATATCCTATTCGA
Found at i:14735076 original size:24 final size:24
Alignment explanation
Indices: 14735049--14735096 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
14735039 TTGAATATTC
* * *
14735049 AAAAAATGACCTATTTGACCAATT
1 AAAAAACGACATATATGACCAATT
*
14735073 AAAAAACGACATATATGACTAATT
1 AAAAAACGACATATATGACCAATT
14735097 TAACCACTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.08, T:0.27
Consensus pattern (24 bp):
AAAAAACGACATATATGACCAATT
Found at i:14741169 original size:13 final size:15
Alignment explanation
Indices: 14741145--14741176 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14741135 TTTAAGTGGA
14741145 AATATGTTAATT-AT
1 AATATGTTAATTAAT
14741159 AATAT-TTAATTAAT
1 AATATGTTAATTAAT
14741173 AATA
1 AATA
14741177 AAATAAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (15 bp):
AATATGTTAATTAAT
Found at i:14745282 original size:18 final size:18
Alignment explanation
Indices: 14745259--14745299 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
14745249 TTAAGATGAT
14745259 ACTAATATAATTTATTCC
1 ACTAATATAATTTATTCC
14745277 ACTAATATAATTTATTCC
1 ACTAATATAATTTATTCC
14745295 -CTAAT
1 ACTAAT
14745300 CTATATACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (18 bp):
ACTAATATAATTTATTCC
Found at i:14749402 original size:28 final size:28
Alignment explanation
Indices: 14749304--14749395 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
14749294 GAACTTGTAT
* *
14749304 AGTGAAGATGTGAAGTGCGAGCTATTAC
1 AGTGAAGCTGTGAAGTGCGAGCTATCAC
*
14749332 AGTGAAGCTGTGAAGTGTGAGCTATCAC
1 AGTGAAGCTGTGAAGTGCGAGCTATCAC
* *
14749360 AGTGAAGCTGCGAAGTACGAGCTATCAC
1 AGTGAAGCTGTGAAGTGCGAGCTATCAC
14749388 AGTGAAGC
1 AGTGAAGC
14749396 CATGAAGAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.22
Consensus pattern (28 bp):
AGTGAAGCTGTGAAGTGCGAGCTATCAC
Found at i:14754050 original size:211 final size:211
Alignment explanation
Indices: 14753680--14754103 Score: 733
Period size: 211 Copynumber: 2.0 Consensus size: 211
14753670 CACTCAACAT
* *
14753680 AATTGTATTTATTTTCAGTACACTAACATTTAACCTCTGAAGTTTAACTCTAATTGTGTTGACAT
1 AATTGGATTTATTTTCAGTACACTAACATTTAACCTCTGAAGTTTAACTCTAATTGTGATGACAT
* * *
14753745 TCCTGATTATTTTAGTGTGCAGATCTGGCATAAAGGCACTGACATCAGTACTCACATTACACTTA
66 TCCTGATTACTTTAGTGTGCAGATCTGACATAAAGGCACTAACATCAGTACTCACATTACACTTA
14753810 ATTACAGTATTAGTTGCTTCGACATTTAAACATCAAGAA-TCCATTCCTCGTGGGATCGATATCC
131 ATTACAGTATTAGTTGCTTCGACATTTAAACATCAAGAACT-CATTCCTCGTGGGATCGATATCC
*
14753874 GATAGAATTGTTCTATC
195 GATAGAATTATTCTATC
* *
14753891 AATTGGATTTATTTTTAGTACACTAACATTTAACCTTTGAAGTTTAACTCTAATTGTGATGACAT
1 AATTGGATTTATTTTCAGTACACTAACATTTAACCTCTGAAGTTTAACTCTAATTGTGATGACAT
* *
14753956 TCCTGATTACTTTAGTTTGCAGATCTGACATAAATGCACTAACATCAGTACTCACATTACACTTA
66 TCCTGATTACTTTAGTGTGCAGATCTGACATAAAGGCACTAACATCAGTACTCACATTACACTTA
*
14754021 ATTGCAGTATTAGTTGCTTCGACATTTAAACATCAAGAACTCATTCCTCGTGGGATCGATATCCG
131 ATTACAGTATTAGTTGCTTCGACATTTAAACATCAAGAACTCATTCCTCGTGGGATCGATATCCG
14754086 ATAGAATTATTCTATC
196 ATAGAATTATTCTATC
14754102 AA
1 AA
14754104 CTATACATGC
Statistics
Matches: 201, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
211 200 1.00
212 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (211 bp):
AATTGGATTTATTTTCAGTACACTAACATTTAACCTCTGAAGTTTAACTCTAATTGTGATGACAT
TCCTGATTACTTTAGTGTGCAGATCTGACATAAAGGCACTAACATCAGTACTCACATTACACTTA
ATTACAGTATTAGTTGCTTCGACATTTAAACATCAAGAACTCATTCCTCGTGGGATCGATATCCG
ATAGAATTATTCTATC
Found at i:14775716 original size:20 final size:22
Alignment explanation
Indices: 14775683--14775722 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
14775673 TCAAATATTT
*
14775683 ATATATATTATTATTGTTCACG
1 ATATATATTATTATTATTCACG
14775705 ATATA-ATT-TTATTATTCA
1 ATATATATTATTATTATTCA
14775723 TGACTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 3 0.18
22 5 0.29
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (22 bp):
ATATATATTATTATTATTCACG
Found at i:14779284 original size:18 final size:18
Alignment explanation
Indices: 14779261--14779303 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
14779251 GAATAAATTC
14779261 TTAATTAAATAAATTT-AA
1 TTAATTAAA-AAATTTAAA
* *
14779279 TTAATTGAAAATTTTAAA
1 TTAATTAAAAAATTTAAA
14779297 TTAATTA
1 TTAATTA
14779304 CAACTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTAATTAAAAAATTTAAA
Found at i:14782901 original size:34 final size:35
Alignment explanation
Indices: 14782858--14782932 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
14782848 TAAACTAAAT
*
14782858 CCAAATA-TTTTTAATTTTTTATCTTTTATCTTAC
1 CCAAATATTTTTTAATTTTTTATCTTTTACCTTAC
*
14782892 CCAAATATTTTTTATTTTTTTATCTTTTACCTTAC
1 CCAAATATTTTTTAATTTTTTATCTTTTACCTTAC
14782927 CCAAAT
1 CCAAAT
14782933 GTTGTTTACT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 7 0.18
35 31 0.82
ACGTcount: A:0.27, C:0.17, G:0.00, T:0.56
Consensus pattern (35 bp):
CCAAATATTTTTTAATTTTTTATCTTTTACCTTAC
Found at i:14783235 original size:9 final size:9
Alignment explanation
Indices: 14783221--14783245 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14783211 AGGATTCGAA
14783221 AACTCGATT
1 AACTCGATT
14783230 AACTCGATT
1 AACTCGATT
14783239 AACTCGA
1 AACTCGA
14783246 AAATTTTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (9 bp):
AACTCGATT
Found at i:14784741 original size:19 final size:20
Alignment explanation
Indices: 14784700--14784742 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
14784690 AATTAAAATT
* * *
14784700 AAAAAAATAAACGAGTAATA
1 AAAAAAATAAACAACTAAAA
14784720 AAAAAAATAAA-AACTAAAA
1 AAAAAAATAAACAACTAAAA
14784739 AAAA
1 AAAA
14784743 TTAATTTAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.12
Consensus pattern (20 bp):
AAAAAAATAAACAACTAAAA
Found at i:14785913 original size:29 final size:29
Alignment explanation
Indices: 14785880--14786030 Score: 103
Period size: 29 Copynumber: 5.2 Consensus size: 29
14785870 TCGTTGACCT
* *
14785880 TTGATCGACCAATTGACTTTGACTGATCG
1 TTGATCGACCTATTGACTTTGACTGATTG
** * * ***
14785909 TTGATCGACCCGTTAACTTTGACCGACCA
1 TTGATCGACCTATTGACTTTGACTGATTG
* *
14785938 TTGATCGAACTATTAACTTTGA-TCGATTG
1 TTGATCGACCTATTGACTTTGACT-GATTG
14785967 TTGA-CTGATCC-ATTGACTTTGACCT-ATTG
1 TTGATC-GA-CCTATTGACTTTGA-CTGATTG
* ** *
14785996 TTGATTGATTTGTTGACTTTGACTGATTG
1 TTGATCGACCTATTGACTTTGACTGATTG
14786025 TTGATC
1 TTGATC
14786031 AATTCGTTGG
Statistics
Matches: 94, Mismatches: 20, Indels: 16
0.72 0.15 0.12
Matches are distributed among these distances:
28 3 0.03
29 89 0.95
30 1 0.01
31 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.40
Consensus pattern (29 bp):
TTGATCGACCTATTGACTTTGACTGATTG
Found at i:14786027 original size:17 final size:16
Alignment explanation
Indices: 14785979--14786028 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
14785969 GACTGATCCA
14785979 TTGACTTTGACCTATTG
1 TTGACTTTGA-CTATTG
14785996 TTGA--TTGA-T-TTG
1 TTGACTTTGACTATTG
14786008 TTGACTTTGACTGATTG
1 TTGACTTTGACT-ATTG
14786025 TTGA
1 TTGA
14786029 TCAATTCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 7 0.25
13 1 0.04
14 4 0.14
15 5 0.18
17 11 0.39
ACGTcount: A:0.18, C:0.10, G:0.22, T:0.50
Consensus pattern (16 bp):
TTGACTTTGACTATTG
Found at i:14786039 original size:29 final size:29
Alignment explanation
Indices: 14785979--14786046 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
14785969 GACTGATCCA
** *
14785979 TTGACTTTGACCTATTGTTGATTGATTTG
1 TTGACTTTGACCTATTGTTGATCAATTCG
14786008 TTGACTTTGA-CTGATTGTTGATCAATTCG
1 TTGACTTTGACCT-ATTGTTGATCAATTCG
*
14786037 TTGGCTTTGA
1 TTGACTTTGA
14786047 TCGACCATTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 2 0.06
29 32 0.94
ACGTcount: A:0.18, C:0.12, G:0.22, T:0.49
Consensus pattern (29 bp):
TTGACTTTGACCTATTGTTGATCAATTCG
Found at i:14789616 original size:17 final size:17
Alignment explanation
Indices: 14789578--14789676 Score: 94
Period size: 17 Copynumber: 5.9 Consensus size: 17
14789568 ATTTTTAAAA
*
14789578 TTTAAATCTAAATTTA-
1 TTTAAATTTAAATTTAT
* *
14789594 TTTAAATTTGAATTTAC
1 TTTAAATTTAAATTTAT
*
14789611 TTTAAATTTAAACTTAT
1 TTTAAATTTAAATTTAT
* * ** *
14789628 TTTGAGTTTGGATTTAA
1 TTTAAATTTAAATTTAT
*
14789645 TTTATATTTAAATTTAT
1 TTTAAATTTAAATTTAT
14789662 TTTAAA-TTAAATTTA
1 TTTAAATTTAAATTTA
14789677 AACTTTAAAA
Statistics
Matches: 64, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
16 23 0.36
17 41 0.64
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTTAAATTTAT
Found at i:14789665 original size:22 final size:23
Alignment explanation
Indices: 14789640--14789683 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
14789630 TGAGTTTGGA
* *
14789640 TTTAATTTATATTTAAA-TTTAT
1 TTTAAATTAAATTTAAACTTTAT
14789662 TTTAAATTAAATTTAAACTTTA
1 TTTAAATTAAATTTAAACTTTA
14789684 AAAGTCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (23 bp):
TTTAAATTAAATTTAAACTTTAT
Found at i:14789685 original size:7 final size:6
Alignment explanation
Indices: 14789575--14789685 Score: 65
Period size: 6 Copynumber: 19.5 Consensus size: 6
14789565 CATATTTTTA
* * *
14789575 AAATTT AAATCT AAATTT --ATTT AAATTT GAATTT -ACTTT AAATTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
* * * * ** * *
14789620 AAACTT -ATTTT GAGTTT GGATTT -AATTT ATATTT AAATTT -ATTTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
14789665 AAA-TT AAATTT AAACTTT AAA
1 AAATTT AAATTT AAA-TTT AAA
14789686 AGTCCAAAAT
Statistics
Matches: 81, Mismatches: 16, Indels: 15
0.72 0.14 0.13
Matches are distributed among these distances:
4 4 0.05
5 20 0.25
6 51 0.63
7 6 0.07
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.51
Consensus pattern (6 bp):
AAATTT
Found at i:14790299 original size:73 final size:73
Alignment explanation
Indices: 14790180--14790323 Score: 270
Period size: 73 Copynumber: 2.0 Consensus size: 73
14790170 GTGTTCGAAC
14790180 CAGTGTAAGGTACACCATTCTCATTCGTTATTAACTATTCATGTTCCGAAACAGTTTGAATCTTT
1 CAGTGTAAGGTACACCATTCTCATTCGTTATTAACTATTCATGTTCCGAAACAGTTTGAATCTTT
14790245 CAAAGTAA
66 CAAAGTAA
* *
14790253 CAGTGTAAGGTACACCATTCTCATTCGTTATTAACTATTTATGTTCCGAAACAGTTTGTATCTTT
1 CAGTGTAAGGTACACCATTCTCATTCGTTATTAACTATTCATGTTCCGAAACAGTTTGAATCTTT
14790318 CAAAGT
66 CAAAGT
14790324 CTGTTAATGT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 69 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (73 bp):
CAGTGTAAGGTACACCATTCTCATTCGTTATTAACTATTCATGTTCCGAAACAGTTTGAATCTTT
CAAAGTAA
Found at i:14791504 original size:30 final size:30
Alignment explanation
Indices: 14791470--14791567 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
14791460 TAAAGGTCCC
*
14791470 TAAACTGTCCAAAAATCATATTTTGACCCT
1 TAAACTTTCCAAAAATCATATTTTGACCCT
*
14791500 TAAACTTTTCCAAAATTTCAT-TTTTGACCC-
1 TAAAC-TTTCCAAAA-ATCATATTTTGACCCT
* * * *
14791530 TAAACTTTCTAAAAATTACATTTTTACCCT
1 TAAACTTTCCAAAAATCATATTTTGACCCT
*
14791560 CAAACTTT
1 TAAACTTT
14791568 TTAAAATTCT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
28 2 0.04
29 16 0.29
30 17 0.30
31 17 0.30
32 4 0.07
ACGTcount: A:0.35, C:0.22, G:0.03, T:0.40
Consensus pattern (30 bp):
TAAACTTTCCAAAAATCATATTTTGACCCT
Found at i:14791513 original size:31 final size:31
Alignment explanation
Indices: 14791477--14791568 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 31
14791467 CCCTAAACTG
14791477 TCCAAAAATCATATTTTGACCCTTAAACTTT
1 TCCAAAAATCATATTTTGACCCTTAAACTTT
*
14791508 TCCAAAATTTCAT-TTTTGACCC-TAAAC-TT
1 TCCAAAA-ATCATATTTTGACCCTTAAACTTT
* * * * *
14791537 TCTAAAAATTACATTTTTACCCTCAAACTTT
1 TCCAAAAATCATATTTTGACCCTTAAACTTT
14791568 T
1 T
14791569 TAAAATTCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
28 2 0.04
29 16 0.32
30 9 0.18
31 19 0.38
32 4 0.08
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.41
Consensus pattern (31 bp):
TCCAAAAATCATATTTTGACCCTTAAACTTT
Found at i:14791573 original size:30 final size:30
Alignment explanation
Indices: 14791479--14791764 Score: 143
Period size: 29 Copynumber: 9.8 Consensus size: 30
14791469 CTAAACTGTC
* * * *
14791479 CAAAAATCATATTTTGACCCTTAAACTTTT
1 CAAAAATTACATTTTTACCCTCAAACTTTT
* *
14791509 CCAAAATTTCATTTTTGACCCT-AAAC-TTT
1 CAAAAATTACATTTTT-ACCCTCAAACTTTT
14791538 CTAAAAATTACATTTTTACCCTCAAACTTTT
1 C-AAAAATTACATTTTTACCCTCAAACTTTT
* * * *
14791569 -TAAAATT-CTATTTTTAACCTC-GATTTTT
1 CAAAAATTAC-ATTTTTACCCTCAAACTTTT
* * * * **
14791597 CCAAAATTCCATTTTAACCC-CTATTTTTT
1 CAAAAATTACATTTTTACCCTCAAACTTTT
* *
14791626 CAAAAATTACCA-TTTTACCCTCGAAC-TTC
1 CAAAAATTA-CATTTTTACCCTCAAACTTTT
* *
14791655 CAAAAATTCCATTTTTTA-CCT-TAA-TTTT
1 CAAAAATTACA-TTTTTACCCTCAAACTTTT
** * *
14791683 CCAAAAATTACCGTTTTACCCTCGAAC-TTC
1 -CAAAAATTACATTTTTACCCTCAAACTTTT
* * *
14791713 CAAAAATTCCATTTTTGACCCT--GATTTTT
1 CAAAAATTACATTTTT-ACCCTCAAACTTTT
*
14791742 CCAAAATTACCA-TTTTACCCTCA
1 CAAAAATTA-CATTTTTACCCTCA
14791765 GATGTCTAAA
Statistics
Matches: 195, Mismatches: 39, Indels: 44
0.70 0.14 0.16
Matches are distributed among these distances:
28 24 0.12
29 110 0.56
30 53 0.27
31 8 0.04
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
CAAAAATTACATTTTTACCCTCAAACTTTT
Found at i:14791688 original size:58 final size:59
Alignment explanation
Indices: 14791595--14791763 Score: 247
Period size: 58 Copynumber: 2.9 Consensus size: 59
14791585 ACCTCGATTT
* *
14791595 TTCC-AAAATTCCA-TTTTAACCCCTATTTTTTCAAAAATTACCATTTTACCCTCGAAC
1 TTCCAAAAATTCCATTTTTAACCCTTATTTTTCCAAAAATTACCATTTTACCCTCGAAC
* * *
14791652 TTCCAAAAATTCCATTTTTTA-CCTTAATTTTCCAAAAATTACCGTTTTACCCTCGAAC
1 TTCCAAAAATTCCATTTTTAACCCTTATTTTTCCAAAAATTACCATTTTACCCTCGAAC
* *
14791710 TTCCAAAAATTCCATTTTTGACCCTGATTTTTCC-AAAATTACCATTTTACCCTC
1 TTCCAAAAATTCCATTTTTAACCCTTATTTTTCCAAAAATTACCATTTTACCCTC
14791764 AGATGTCTAA
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
57 4 0.04
58 81 0.81
59 15 0.15
ACGTcount: A:0.30, C:0.27, G:0.03, T:0.40
Consensus pattern (59 bp):
TTCCAAAAATTCCATTTTTAACCCTTATTTTTCCAAAAATTACCATTTTACCCTCGAAC
Found at i:14791690 original size:87 final size:89
Alignment explanation
Indices: 14791535--14791700 Score: 205
Period size: 87 Copynumber: 1.9 Consensus size: 89
14791525 GACCCTAAAC
*** * *
14791535 TTTCTAAAAATTACATTTTTACCCTCAAACTTTTTAAAATTCTATTTTTAACCTCGATTTTTCCA
1 TTTCTAAAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCTCGAATTTTCCA
14791600 AAATT-CCATTTTAACCCCTATTT
66 AAATTACCATTTTAACCCCTATTT
* * *
14791623 TTTC-AAAAATTACCA-TTTTACCCTCGAACTTCCAAAAATTCCATTTTTTACCT-TAATTTTCC
1 TTTCTAAAAATTA-CATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCTCGAATTTTCC
*
14791685 AAAAATTACCGTTTTA
65 -AAAATTACCATTTTA
14791701 CCCTCGAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
86 7 0.11
87 46 0.70
88 13 0.20
ACGTcount: A:0.32, C:0.22, G:0.02, T:0.44
Consensus pattern (89 bp):
TTTCTAAAAATTACATTTTTACCCTCAAACTTCCAAAAATTCCATTTTTAACCTCGAATTTTCCA
AAATTACCATTTTAACCCCTATTT
Found at i:14791803 original size:116 final size:115
Alignment explanation
Indices: 14791595--14791803 Score: 248
Period size: 116 Copynumber: 1.8 Consensus size: 115
14791585 ACCTCGATTT
14791595 TTCCAAAATTCCATTTTAACCCCTATTTTTTCAAAAATTACCATTTTACCCTCGAACTTCCAAAA
1 TTCCAAAATTCCATTTTAACCCCTATTTTTTCAAAAATTACCATTTTACCCTCGAACTTCCAAAA
* ** * *
14791660 ATTCCATTTTTTACCTTAATTTTCCAAAAATTACCGTTTTACCCTCGAAC
66 ATTCCATTTTTGACCCAAACTTCCCAAAAATTACCGTTTTACCCTCGAAC
* *
14791710 TTCCAAAAATTCCATTTTTGA-CCCTGA-TTTTTCCAAAATTACCATTTTACCCTC-AGA-TGT-
1 TTCC-AAAATTCCA-TTTTAACCCCT-ATTTTTTCAAAAATTACCATTTTACCCTCGA-ACT-TC
* *
14791770 CTAAAATTCTATTTTTGACCCCAAACTTCCCAAA
61 CAAAAATTCCATTTTTGA-CCCAAACTTCCCAAA
14791804 TTATCATTTT
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
115 21 0.27
116 52 0.66
117 6 0.08
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (115 bp):
TTCCAAAATTCCATTTTAACCCCTATTTTTTCAAAAATTACCATTTTACCCTCGAACTTCCAAAA
ATTCCATTTTTGACCCAAACTTCCCAAAAATTACCGTTTTACCCTCGAAC
Found at i:14802791 original size:11 final size:12
Alignment explanation
Indices: 14802764--14802793 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
14802754 AACTCGTGCA
14802764 CCCAAAAACACT
1 CCCAAAAACACT
14802776 CCCAAAAACACT
1 CCCAAAAACACT
14802788 -CCAAAA
1 CCCAAAA
14802794 CCTTCATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.53, C:0.40, G:0.00, T:0.07
Consensus pattern (12 bp):
CCCAAAAACACT
Found at i:14808382 original size:33 final size:30
Alignment explanation
Indices: 14808329--14808391 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 30
14808319 TATAGATACA
14808329 ATTTTTTATTTTTATTTTTATTTCACTTTTTGT
1 ATTTTTTATTTTTA-TTTTATTT-A-TTTTTGT
14808362 ATTTTGTTATTTCTTA-TTTATTTATTTTTG
1 ATTTT-TTATTT-TTATTTTATTTATTTTTG
14808392 GTTTTTGACT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
31 6 0.21
32 1 0.04
33 12 0.43
34 6 0.21
35 3 0.11
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (30 bp):
ATTTTTTATTTTTATTTTATTTATTTTTGT
Found at i:14812538 original size:33 final size:31
Alignment explanation
Indices: 14812499--14812573 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 31
14812489 AATTTTTCTA
* **
14812499 TCTCTTTTTCTTCCCTTTCATCTTTTTCTTTTC
1 TCTCTTTTTCTTCACTTTC-T-TTGCTCTTTTC
14812532 TCTCTTTCTT-TTCACTTTCTTTGCTCTTTTC
1 TCTCTTT-TTCTTCACTTTCTTTGCTCTTTTC
14812563 TCTCATTTTTC
1 TCTC-TTTTTC
14812574 CTTTCTTTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
31 15 0.42
32 4 0.11
33 15 0.42
34 2 0.06
ACGTcount: A:0.04, C:0.29, G:0.01, T:0.65
Consensus pattern (31 bp):
TCTCTTTTTCTTCACTTTCTTTGCTCTTTTC
Found at i:14812560 original size:31 final size:28
Alignment explanation
Indices: 14812525--14812581 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
14812515 TTCATCTTTT
*
14812525 TCTTTTCTCTCTTTCTTTTCACTTTCTTTGC
1 TCTTTTCTCTC-AT-TTTTC-CTTTCTTTGC
14812556 TCTTTTCTCTCATTTTTCCTTTCTTT
1 TCTTTTCTCTCATTTTTCCTTTCTTT
14812582 TTTTCAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 5 0.20
30 1 0.04
31 11 0.44
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.67
Consensus pattern (28 bp):
TCTTTTCTCTCATTTTTCCTTTCTTTGC
Found at i:14812582 original size:21 final size:20
Alignment explanation
Indices: 14812556--14812603 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14812546 CTTTCTTTGC
*
14812556 TCTTTTCTCTCATTTTTCCTT
1 TCTTTT-TCTCAATTTTCCTT
* *
14812577 TCTTTTTTTCAATTTTCTTT
1 TCTTTTTCTCAATTTTCCTT
14812597 TCTTTTT
1 TCTTTTT
14812604 AATTCTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTTTTCTCAATTTTCCTT
Found at i:14817390 original size:24 final size:21
Alignment explanation
Indices: 14817363--14817407 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 21
14817353 TTTATTCTAG
14817363 TTAGAATAAGAAAATAGAGAAAAA
1 TTAGAATAA-AAAA-AGA-AAAAA
14817387 TTAGAATAAAAAAAGAAAAAA
1 TTAGAATAAAAAAAGAAAAAA
14817408 GAGTAAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.24
22 3 0.14
23 4 0.19
24 9 0.43
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (21 bp):
TTAGAATAAAAAAAGAAAAAA
Found at i:14821489 original size:135 final size:135
Alignment explanation
Indices: 14821247--14821518 Score: 535
Period size: 135 Copynumber: 2.0 Consensus size: 135
14821237 TGAAGAGATG
*
14821247 ATGCTAGGTGTGGGGAATAGGGAATGCTAGAGAGAAGAGAGAGTGTTGGATGAAGGGATGATTTG
1 ATGCTAGGTGTGGGGAATAGGGAATGATAGAGAGAAGAGAGAGTGTTGGATGAAGGGATGATTTG
14821312 AAATGGTGAAAATGGGGTCTTATTTATAGGTGAGGAGAGGATAGTTGTTTACTAAAAATAGAGAA
66 AAATGGTGAAAATGGGGTCTTATTTATAGGTGAGGAGAGGATAGTTGTTTACTAAAAATAGAGAA
14821377 GTTTA
131 GTTTA
14821382 ATGCTAGGTGTGGGGAATAGGGAATGATAGAGAGAAGAGAGAGTGTTGGATGAAGGGATGATTTG
1 ATGCTAGGTGTGGGGAATAGGGAATGATAGAGAGAAGAGAGAGTGTTGGATGAAGGGATGATTTG
14821447 AAATGGTGAAAATGGGGTCTTATTTATAGGTGAGGAGAGGATAGTTGTTTACTAAAAATAGAGAA
66 AAATGGTGAAAATGGGGTCTTATTTATAGGTGAGGAGAGGATAGTTGTTTACTAAAAATAGAGAA
14821512 GTTTA
131 GTTTA
14821517 AT
1 AT
14821519 CTCCTCATGC
Statistics
Matches: 136, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.35, C:0.03, G:0.35, T:0.28
Consensus pattern (135 bp):
ATGCTAGGTGTGGGGAATAGGGAATGATAGAGAGAAGAGAGAGTGTTGGATGAAGGGATGATTTG
AAATGGTGAAAATGGGGTCTTATTTATAGGTGAGGAGAGGATAGTTGTTTACTAAAAATAGAGAA
GTTTA
Found at i:14823995 original size:29 final size:29
Alignment explanation
Indices: 14823928--14823993 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
14823918 ATCGAATACT
* *
14823928 AAGATTAAATAAATAATAAAATGATTTAA
1 AAGATTAAATAAATAAGAAAATGATATAA
*
14823957 AGGATTAAATAAAT-AGAAAATAGA-ATAA
1 AAGATTAAATAAATAAGAAAAT-GATATAA
14823985 AAGATTAAA
1 AAGATTAAA
14823994 ATTTAAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 17 0.53
29 15 0.47
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.26
Consensus pattern (29 bp):
AAGATTAAATAAATAAGAAAATGATATAA
Found at i:14826364 original size:21 final size:21
Alignment explanation
Indices: 14826338--14826393 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
14826328 TTCAATCCTA
14826338 CTGTGTCGTGACATGGAGACT
1 CTGTGTCGTGACATGGAGACT
14826359 CTGTGTCGTGACATGGAGACT
1 CTGTGTCGTGACATGGAGACT
* *
14826380 CTTTGTCGTAACAT
1 CTGTGTCGTGACAT
14826394 CTTCATCAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (21 bp):
CTGTGTCGTGACATGGAGACT
Found at i:14836167 original size:19 final size:18
Alignment explanation
Indices: 14836135--14836173 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 18
14836125 CGTCTAAGCC
14836135 TTCCATTATCTTTC-ATT
1 TTCCATTATCTTTCAATT
14836152 TTCCATTATCTCTTTCAATT
1 TTCCATTA--TCTTTCAATT
14836172 TT
1 TT
14836174 TGAGAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.18, C:0.23, G:0.00, T:0.59
Consensus pattern (18 bp):
TTCCATTATCTTTCAATT
Found at i:14841309 original size:23 final size:23
Alignment explanation
Indices: 14841282--14841325 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14841272 TACCTATTTG
14841282 TTTTTAAAAACTTT-ATTTTGTAA
1 TTTTTAAAAA-TTTGATTTTGTAA
*
14841305 TTTTTGAAAATTTGATTTTGT
1 TTTTTAAAAATTTGATTTTGT
14841326 GACTTATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (23 bp):
TTTTTAAAAATTTGATTTTGTAA
Found at i:14849983 original size:22 final size:23
Alignment explanation
Indices: 14849932--14849983 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
14849922 AGAAGAGTCG
* * *
14849932 AAATTAAATTGTAATTTTTATTA
1 AAATTAAAATATAATTTTTATAA
*
14849955 TAA-TAAAATATAATTTTTA-AA
1 AAATTAAAATATAATTTTTATAA
14849976 AAATTAAA
1 AAATTAAA
14849984 TCCAAATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
21 3 0.13
22 18 0.78
23 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (23 bp):
AAATTAAAATATAATTTTTATAA
Found at i:14858155 original size:49 final size:49
Alignment explanation
Indices: 14858004--14858988 Score: 611
Period size: 49 Copynumber: 20.2 Consensus size: 49
14857994 GAAGATTTGG
* *
14858004 AGGG-AAGGTTTAAGTCACAACGGCGAACCTTA-TACCTCAGAAACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACC-TAGTACCTCAGAGACATGA
* * * * * * ** * *
14858052 AGGGAAAGATCTAAGCCACGACGGC-AGATCTAGTACAAC-GAAGTCA-CA
1 AGGGAAAGGTTTAAGTCGCAACGGCGA-ACCTAGTACCTCAG-AGACATGA
* *
14858100 AGGGAAAGGTTTAAGTCGCAATGGTGAACCTAGTACCTCAGAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * * * * *
14858149 AGGGAAAGATCTAAG-CTGCGACGGCGGATCC-AATACCACAAACACA-CA
1 AGGGAAAGGTTTAAGTC-GCAACGGC-GAACCTAGTACCTCAGAGACATGA
* * ** *
14858197 AGAGAAAGGTTTAAGTCACAATAGTGAACCTAGTACCTCAGAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * * * *
14858246 AGGGAAAGATCTAAGCCGCAACGGTGGATCC-AGTACCACAAAGACA-CA
1 AGGGAAAGGTTTAAGTCGCAACGG-CGAACCTAGTACCTCAGAGACATGA
** *
14858294 AGGGAAAGGTTTAAGTCATAATGGCGAACCTAGTACCTCAGAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * * * *
14858343 AGGGAAAGATCTAAG-CTGCGACGGCGGATCC-AATACCACAAAGACA-CA
1 AGGGAAAGGTTTAAGTC-GCAACGGC-GAACCTAGTACCTCAGAGACATGA
* **
14858391 AGGGAAAGGTTTAAGTCACAATAGCGAACCTAGTACCTCAGAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * *
14858440 AGGGAAAGATCTAAGCCGCAACGGCGGATCC-AGTACCAC-GAAGACA-CA
1 AGGGAAAGGTTTAAGTCGCAACGGC-GAACCTAGTACCTCAG-AGACATGA
* *
14858488 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * * *
14858537 AGGGAAAGATCTAAGCCGCAACGGCGGATCTAGTACCAC-GAGGACACAGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGA-GACA-TGA
* * * *
14858587 A-GGAAAGGTTTAAGTCGCAAAGGTGAACCTTGTACCTCAAAGACATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
* * * * * * *
14858635 AGGGAAAGATTTAAGCCGCAATGGCGAATCC-AATACCACAAAGATATGGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAA-CCTAGTACCTCAGAGACAT-GA
** * *
14858685 A-GGAAAGGTTTAAGTCGCAACGGAAAACCTTGTACCTAAGA-AGCATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGA-CATGA
* * * * *
14858733 AGGGAAAGATTTAAGCCGCAACGACGAATCC-AGTACCAC-GAAGACATGG
1 AGGGAAAGGTTTAAGTCGCAACGGCGAA-CCTAGTACCTCAG-AGACATGA
* * * * * *
14858782 AGGGAAAGGTTTAACTCACAATGGCAAACCTTGTACCTCA-AAAGCATGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGA-CATGA
* * * * ** *
14858831 AGGGAAAGATTTAAGCCGCAACAGCGAATCC-AGTACCAC-GAAGATTTAA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAA-CCTAGTACCTCAG-AGACATGA
* * * *
14858880 AGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAGAAACATAA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
** * * * **
14858929 AGGGAAACATTTAAGTCGCAATGGCGAATCTAGTACCT-TGAAGATTTGA
1 AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAG-AGACATGA
14858978 AGGGAAAGGTT
1 AGGGAAAGGTT
14858989 ACGACCACAA
Statistics
Matches: 688, Mismatches: 203, Indels: 91
0.70 0.21 0.09
Matches are distributed among these distances:
47 16 0.02
48 184 0.27
49 455 0.66
50 33 0.05
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.16
Consensus pattern (49 bp):
AGGGAAAGGTTTAAGTCGCAACGGCGAACCTAGTACCTCAGAGACATGA
Found at i:14858157 original size:97 final size:97
Alignment explanation
Indices: 14858004--14858965 Score: 1153
Period size: 97 Copynumber: 9.9 Consensus size: 97
14857994 GAAGATTTGG
* *
14858004 AGGG-AAGGTTTAAGTCACAACGGCGAACCTTA-TACCTCAGAAACATGAAGGGAAAGATCTAAG
1 AGGGAAAGGTTTAAGTCACAATGGCGAACC-TAGTACCTCAGAGACATGAAGGGAAAGATCTAAG
* * * * * *
14858067 CCACGACGGCAGATCTAGTACAACGAAGTCACA
65 CCGCAACGGCGGATCCAGTACCACGAAGACACA
* *
14858100 AGGGAAAGGTTTAAGTCGCAATGGTGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
* * * * *
14858165 TGCGACGGCGGATCCAATACCACAAACACACA
66 CGCAACGGCGGATCCAGTACCACGAAGACACA
* * *
14858197 AGAGAAAGGTTTAAGTCACAATAGTGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
* *
14858262 CGCAACGGTGGATCCAGTACCACAAAGACACA
66 CGCAACGGCGGATCCAGTACCACGAAGACACA
*
14858294 AGGGAAAGGTTTAAGTCATAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
* * * *
14858359 TGCGACGGCGGATCCAATACCACAAAGACACA
66 CGCAACGGCGGATCCAGTACCACGAAGACACA
*
14858391 AGGGAAAGGTTTAAGTCACAATAGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
14858456 CGCAACGGCGGATCCAGTACCACGAAGACACA
66 CGCAACGGCGGATCCAGTACCACGAAGACACA
14858488 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
* *
14858553 CGCAACGGCGGATCTAGTACCACGAGGACACA
66 CGCAACGGCGGATCCAGTACCACGAAGACACA
* * * * * * *
14858585 GAAGGAAAGGTTTAAGTCGCAAAGGTGAACCTTGTACCTCAAAGACATGAAGGGAAAGATTTAAG
1 -AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAG
* * * * * *
14858650 CCGCAATGGCGAATCCAATACCACAAAGATATGGA
65 CCGCAACGGCGGATCCAGTACCACGAAGACA--CA
* * ** * * *
14858685 A-GGAAAGGTTTAAGTCGCAACGGAAAACCTTGTACCTAAGA-AGCATGAAGGGAAAGATTTAAG
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGA-CATGAAGGGAAAGATCTAAG
* * **
14858748 CCGCAACGACGAATCCAGTACCACGAAGACATGG
65 CCGCAACGGCGGATCCAGTACCACGAAGACA-CA
* * * * *
14858782 AGGGAAAGGTTTAACTCACAATGGCAAACCTTGTACCTCA-AAAGCATGAAGGGAAAGATTTAAG
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGA-CATGAAGGGAAAGATCTAAG
* * *
14858846 CCGCAACAGCGAATCCAGTACCACGAAGATTTA-A
65 CCGCAACGGCGGATCCAGTACCACGAAGA--CACA
* * * * * * * * *
14858880 AGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAGAAACATAAAGGGAAACATTTAAGT
1 AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
* * *
14858945 CGCAATGGCGAATCTAGTACC
66 CGCAACGGCGGATCCAGTACC
14858966 TTGAAGATTT
Statistics
Matches: 770, Mismatches: 85, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
96 6 0.01
97 443 0.58
98 315 0.41
99 4 0.01
100 2 0.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (97 bp):
AGGGAAAGGTTTAAGTCACAATGGCGAACCTAGTACCTCAGAGACATGAAGGGAAAGATCTAAGC
CGCAACGGCGGATCCAGTACCACGAAGACACA
Found at i:14859354 original size:39 final size:39
Alignment explanation
Indices: 14859249--14859464 Score: 143
Period size: 39 Copynumber: 5.6 Consensus size: 39
14859239 GAAGATTCTG
* * * * *
14859249 ATCTTTTACCCAGAGCTTAGGGCAGATCACCATTAGCCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTAGCCA
* * * * *
14859288 ATCTTTTACCCCGAGTCTAGGGTAGATTACCATTAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTAGCCA
* ** * * *
14859327 ATCTCTTACCTCGAGCCTGGGGCAGAT-TGCAGTCATCCG
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCA-TTAGCCA
* * *
14859366 ATCTCTTACCCCTAGCCTGGGGTAGATCACCACT---CA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTAGCCA
* * * ** *
14859402 ATCTTTTACCTCGAACCTAAGGCAGATCACCATCAGCCA
1 ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTAGCCA
* * *
14859441 GTCTCTTACCCCGATCATGGGGCA
1 ATCTCTTACCCCGAGCCTGGGGCA
14859465 AATGACAATC
Statistics
Matches: 132, Mismatches: 40, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
36 26 0.20
38 2 0.02
39 102 0.77
40 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCCTGGGGCAGATCACCATTAGCCA
Found at i:14859997 original size:17 final size:17
Alignment explanation
Indices: 14859970--14860054 Score: 73
Period size: 17 Copynumber: 5.0 Consensus size: 17
14859960 TGGACCCCAT
*
14859970 TTTTAAAATTTGAATTTA
1 TTTT-AAATTTAAATTTA
* *
14859988 CTTTAAATTTAAACTTA
1 TTTTAAATTTAAATTTA
* * **
14860005 TTTTGAGTTTGGATTTA
1 TTTTAAATTTAAATTTA
*
14860022 ATTTAAATTTAAATTTA
1 TTTTAAATTTAAATTTA
*
14860039 TTTTATA-TTAAATTTA
1 TTTTAAATTTAAATTTA
14860055 AACTTTGAAA
Statistics
Matches: 51, Mismatches: 16, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
16 9 0.18
17 39 0.76
18 3 0.06
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
TTTTAAATTTAAATTTA
Found at i:14860027 original size:34 final size:34
Alignment explanation
Indices: 14859978--14860042 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
14859968 ATTTTTAAAA
*
14859978 TTTGAATTTACTTTAAATTTAAACTTATTTTGAG
1 TTTGAATTTAATTTAAATTTAAACTTATTTTGAG
* *
14860012 TTTGGATTTAATTTAAATTTAAATTTATTTT
1 TTTGAATTTAATTTAAATTTAAACTTATTTT
14860043 ATATTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (34 bp):
TTTGAATTTAATTTAAATTTAAACTTATTTTGAG
Found at i:14861889 original size:29 final size:31
Alignment explanation
Indices: 14861786--14861955 Score: 126
Period size: 30 Copynumber: 5.7 Consensus size: 31
14861776 CCCTAAGTTG
* *
14861786 TCCAAAAAT-CATATTTTGACCCTTAAACTTT
1 TCCAAAATTCCAT-TTTTGACCCTCAAACTTT
14861817 TCCAAAATTCCATTTTTGA-CCTCAAACTTT
1 TCCAAAATTCCATTTTTGACCCTCAAACTTT
** * *
14861847 TTGAAAATTACATTTTT-ACCCTCGAAC-TT
1 TCCAAAATTCCATTTTTGACCCTCAAACTTT
* * *
14861876 TCCAGAATTCCATTTTTGACCCT--GATTTT
1 TCCAAAATTCCATTTTTGACCCTCAAACTTT
* *
14861905 TCCAAAAATTACCA-TTTTGCCCCT-GAAC--T
1 TCC-AAAATT-CCATTTTTGACCCTCAAACTTT
*
14861934 TCCAAAAATTTCATTTTTGACC
1 TCC-AAAATTCCATTTTTGACC
14861956 TTGATTTTTT
Statistics
Matches: 113, Mismatches: 18, Indels: 18
0.76 0.12 0.12
Matches are distributed among these distances:
28 3 0.03
29 39 0.35
30 50 0.44
31 18 0.16
32 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.39
Consensus pattern (31 bp):
TCCAAAATTCCATTTTTGACCCTCAAACTTT
Found at i:14861913 original size:59 final size:57
Alignment explanation
Indices: 14861816--14862186 Score: 311
Period size: 59 Copynumber: 6.3 Consensus size: 57
14861806 CCTTAAACTT
** *
14861816 TTCCAAAATTCCATTTTTGACCTCAAACTTTTT--GAAAATTA-CATTTTTACCCTCGAAC
1 TTCCAAAATTCCATTTTTGACC-CTGA-TTTTTCCAAAAATTACCA-TTTTACCCT-GAAC
* *
14861874 TTTCCAGAATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTGCCCCTGAAC
1 -TTCCAAAATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTT-ACCCTGAAC
* * *** ** *
14861933 TTCCAAAAATTTCATTTTTGACCTTGATTTTTTTTAAAATTACCATCGTACTCTTGAAC
1 TTCC-AAAATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTAC-CCTGAAC
* * * *
14861992 TTTCAAAATTTCTAATTTTGACTCC-GATATTTCCAAAAATTACCATTTTACTCCTGAAC
1 TTCCAAAA-TTCCATTTTTGAC-CCTGATTTTTCCAAAAATTACCATTTTAC-CCTGAAC
* * *
14862051 TTCTAAAAATTCCATTTTTGA-CCTCGATTTATGCAAAAATTACCATTTTACCCTCGAAC
1 TTC-CAAAATTCCATTTTTGACCCT-GATTTTTCCAAAAATTACCATTTTACCCT-GAAC
* * * * **
14862110 TTCTAAAAATTACATTTTTAACCTTGATTTTTCCAAAAATTACCATTTTACCCCCAAAC
1 TTC-CAAAATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTA-CCCTGAAC
*
14862169 TTCTAAAAATTCCATTTT
1 TTC-CAAAATTCCATTTT
14862187 GAACCCGAAC
Statistics
Matches: 256, Mismatches: 42, Indels: 28
0.79 0.13 0.09
Matches are distributed among these distances:
57 7 0.03
58 14 0.05
59 219 0.86
60 16 0.06
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (57 bp):
TTCCAAAATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTACCCTGAAC
Found at i:14861995 original size:118 final size:118
Alignment explanation
Indices: 14861820--14862186 Score: 395
Period size: 118 Copynumber: 3.1 Consensus size: 118
14861810 AAACTTTTCC
* * ** *
14861820 AAAATTCCATTTTTGACCTCAAACTTTTTG--AAAATTA-CATTTTTACCCTCGAACTTTCCAGA
1 AAAATTCCATTTTTGACCTC-GA-TTTATGCAAAAATTACCA-TCGTACCCTCGAACTTTCCAAA
* *
14861882 ATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTGCCCCTGAACTTCCA
63 ATTCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTACCCCTGAACTTCTA
* * * *** * *
14861938 AAAATTTCATTTTTGACCTTGATTTTTTTTAAAATTACCATCGTACTCTTGAACTTT-CAAAATT
1 AAAATTCCATTTTTGACCTCGATTTATGCAAAAATTACCATCGTACCCTCGAACTTTCCAAAA-T
* * * *
14862002 TCTAATTTTGACTCC-GATATTTCCAAAAATTACCATTTTACTCCTGAACTTCTA
65 TCCATTTTTGAC-CCTGATTTTTCCAAAAATTACCATTTTACCCCTGAACTTCTA
** *
14862056 AAAATTCCATTTTTGACCTCGATTTATGCAAAAATTACCATTTTACCCTCGAAC-TTCTAAAAAT
1 AAAATTCCATTTTTGACCTCGATTTATGCAAAAATTACCATCGTACCCTCGAACTTTC-CAAAAT
* * * **
14862120 TACATTTTTAACCTTGATTTTTCCAAAAATTACCATTTTACCCCCAAACTTCTA
65 TCCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTACCCCTGAACTTCTA
14862174 AAAATTCCATTTT
1 AAAATTCCATTTT
14862187 GAACCCGAAC
Statistics
Matches: 206, Mismatches: 35, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
116 5 0.02
117 8 0.04
118 185 0.90
119 8 0.04
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (118 bp):
AAAATTCCATTTTTGACCTCGATTTATGCAAAAATTACCATCGTACCCTCGAACTTTCCAAAATT
CCATTTTTGACCCTGATTTTTCCAAAAATTACCATTTTACCCCTGAACTTCTA
Found at i:14862045 original size:29 final size:28
Alignment explanation
Indices: 14862006--14862243 Score: 123
Period size: 29 Copynumber: 8.2 Consensus size: 28
14861996 AAAATTTCTA
*
14862006 ATTTTGACTCCGATATTTCCAAAAATTACC
1 ATTTTGAC-CCGA-ACTTCCAAAAATTACC
*
14862036 ATTTT-ACTCCTGAACTTCTAAAAATT-CC
1 ATTTTGAC-CC-GAACTTCCAAAAATTACC
** *
14862064 ATTTTTGACCTCGATTTATGCAAAAATTACC
1 A-TTTTGACC-CGAACT-TCCAAAAATTACC
*
14862095 ATTTT-ACCCTCGAACTTCTAAAAATTA-C
1 ATTTTGA-CC-CGAACTTCCAAAAATTACC
* * **
14862123 ATTTTTAACCTTGATTTTTCCAAAAATTACC
1 A-TTTTGACC-CGA-ACTTCCAAAAATTACC
* *
14862154 ATTTT-ACCCCCAAACTTCTAAAAATT-CC
1 ATTTTGA--CCCGAACTTCCAAAAATTACC
* *
14862182 ATTTTGAACCCGAACTTCCTAAAATTACG
1 ATTTTG-ACCCGAACTTCCAAAAATTACC
* *
14862211 ATTTTGCTCCCG-AGTGTCC-AAAATTACC
1 ATTTTG-ACCCGAACT-TCCAAAAATTACC
14862239 ATTTT
1 ATTTT
14862244 TCCCTCGGGT
Statistics
Matches: 164, Mismatches: 27, Indels: 36
0.72 0.12 0.16
Matches are distributed among these distances:
28 42 0.26
29 68 0.41
30 47 0.29
31 7 0.04
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (28 bp):
ATTTTGACCCGAACTTCCAAAAATTACC
Found at i:14862206 original size:28 final size:30
Alignment explanation
Indices: 14862140--14862216 Score: 81
Period size: 28 Copynumber: 2.7 Consensus size: 30
14862130 ACCTTGATTT
* *
14862140 TTCCAAAAATTACCATTTT-ACCCCCAAAC
1 TTCCTAAAATTACCATTTTGACACCCAAAC
*
14862169 TT-CTAAAAATT-CCATTTTGA-ACCCGAAC
1 TTCCT-AAAATTACCATTTTGACACCCAAAC
*
14862197 TTCCTAAAATTACGATTTTG
1 TTCCTAAAATTACCATTTTG
14862217 CTCCCGAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 22 0.55
29 18 0.45
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.34
Consensus pattern (30 bp):
TTCCTAAAATTACCATTTTGACACCCAAAC
Found at i:14864017 original size:98 final size:98
Alignment explanation
Indices: 14863820--14864004 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 98
14863810 AACCTTGAAA
* * * *
14863820 AAGGGTATTCGATTATCCCGGTTTGAAGAAAAGTCGCACCTAGTAAGTTAATGCATAAATTTTCA
1 AAGGGTATTCGATTATCCCAGTTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCA
14863885 AAACCCGAAATAAAGGAATATTTACCTCAATTT
66 AAACCCGAAATAAAGGAATATTTACCTCAATTT
* * *
14863918 AAGGGTATTCGATTATCCTAGTTTGAAGAAAAATCGCGCCTAGTAAGTTAAGGCACGAATTTTCA
1 AAGGGTATTCGATTATCCCAGTTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCA
*
14863983 AAACTCGAAATAAAGGAATATT
66 AAACCCGAAATAAAGGAATATT
14864005 GTCTTGATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 79 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (98 bp):
AAGGGTATTCGATTATCCCAGTTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCA
AAACCCGAAATAAAGGAATATTTACCTCAATTT
Found at i:14864169 original size:16 final size:16
Alignment explanation
Indices: 14864135--14864182 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 16
14864125 AAAGAATGAA
*
14864135 AAAATAT-ACAAAAAT
1 AAAATATGAGAAAAAT
14864150 -AAATATGAGAAAAAT
1 AAAATATGAGAAAAAT
*
14864165 AAAATACGAG-AAAAT
1 AAAATATGAGAAAAAT
14864180 AAA
1 AAA
14864183 TAAGAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 6 0.21
15 15 0.52
16 8 0.28
ACGTcount: A:0.71, C:0.04, G:0.08, T:0.17
Consensus pattern (16 bp):
AAAATATGAGAAAAAT
Found at i:14864330 original size:30 final size:31
Alignment explanation
Indices: 14864289--14864527 Score: 239
Period size: 30 Copynumber: 8.0 Consensus size: 31
14864279 GGAGAGTTTC
* * *
14864289 GGGTTAAAATGTAA-GTTTGGAAAGTTTTAG
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
* *
14864319 GGGTAAAAATGTAATTTTTGGAAAATTT-GG
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
*
14864349 GGGTAAAAATGTAATTTTTGG-AAGTTTGA-
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
*
14864378 GGGTAAAAATGCAATTTTTGG-AAGTTTAAG
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
14864408 GGGTAAAAATGTAA-TTTTGGAAAGTTTAAG
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
* * **
14864438 GGCT-AAAATGTAATTTTTAGAAAGTTCGA-
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
* *
14864467 GGGTCAAAATGT-ATTTTTGTG-AAGTATAA-
1 GGGTAAAAATGTAATTTTTG-GAAAGTTTAAG
* * * *
14864496 GGGTCAAAATATGATTTTTGGAAAGTTCAAG
1 GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
14864527 G
1 G
14864528 ATCTTTTGGG
Statistics
Matches: 178, Mismatches: 21, Indels: 19
0.82 0.10 0.09
Matches are distributed among these distances:
29 73 0.41
30 93 0.52
31 12 0.07
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (31 bp):
GGGTAAAAATGTAATTTTTGGAAAGTTTAAG
Found at i:14864356 original size:59 final size:60
Alignment explanation
Indices: 14864289--14864522 Score: 246
Period size: 59 Copynumber: 4.0 Consensus size: 60
14864279 GGAGAGTTTC
* * * *
14864289 GGGTTAAAATGTAAGTTTGGAAAGTTTTAGGGGTAAAAATGTAATTTTTGGAAAATTTGG
1 GGGTAAAAATGTAATTTTGGAAAGTTTAAGGGGTAAAAATGTAATTTTTGGAAAGTTTGG
* * *
14864349 GGGTAAAAATGTAATTTTTGG-AAGTTTGA-GGGTAAAAATGCAATTTTTGG-AAGTTTAAG
1 GGGTAAAAATGTAA-TTTTGGAAAGTTTAAGGGGTAAAAATGTAATTTTTGGAAAGTTT-GG
* * * *
14864408 GGGTAAAAATGTAATTTTGGAAAGTTTAAGGGCT-AAAATGTAATTTTTAGAAAGTTCGA
1 GGGTAAAAATGTAATTTTGGAAAGTTTAAGGGGTAAAAATGTAATTTTTGGAAAGTTTGG
* * * * * *
14864467 GGGTCAAAATGTATTTTTGTG-AAGTATAA-GGGTCAAAATATGATTTTTGGAAAGTT
1 GGGTAAAAATGTAATTTTG-GAAAGTTTAAGGGGTAAAAATGTAATTTTTGGAAAGTT
14864523 CAAGGATCTT
Statistics
Matches: 147, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
58 14 0.10
59 99 0.67
60 29 0.20
61 5 0.03
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (60 bp):
GGGTAAAAATGTAATTTTGGAAAGTTTAAGGGGTAAAAATGTAATTTTTGGAAAGTTTGG
Found at i:14866267 original size:17 final size:17
Alignment explanation
Indices: 14866252--14866395 Score: 225
Period size: 17 Copynumber: 8.4 Consensus size: 17
14866242 TTTAATTTAG
*
14866252 AATAAATTTAAATTTAAA
1 AATAAATTTAAACTT-AA
14866270 AATAAATTTAAACTTAA
1 AATAAATTTAAACTTAA
*
14866287 AATAAATTTAAACTTAT
1 AATAAATTTAAACTTAA
14866304 AATAAATTTAAACTTAA
1 AATAAATTTAAACTTAA
* *
14866321 AATAAATTTAAATTTAT
1 AATAAATTTAAACTTAA
14866338 AATAAATTTAAACTTAA
1 AATAAATTTAAACTTAA
* *
14866355 AATAAATTTAAATTTAT
1 AATAAATTTAAACTTAA
14866372 AATAAATTTAAACTTAA
1 AATAAATTTAAACTTAA
14866389 AATAAAT
1 AATAAAT
14866396 CTAACATGGA
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
17 101 0.88
18 14 0.12
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAAATTTAAACTTAA
Found at i:14866280 original size:34 final size:34
Alignment explanation
Indices: 14866252--14866395 Score: 261
Period size: 34 Copynumber: 4.2 Consensus size: 34
14866242 TTTAATTTAG
*
14866252 AATAAATTTAAATTTAAAAATAAATTTAAACTTAA
1 AATAAATTTAAATTT-ATAATAAATTTAAACTTAA
*
14866287 AATAAATTTAAACTTATAATAAATTTAAACTTAA
1 AATAAATTTAAATTTATAATAAATTTAAACTTAA
14866321 AATAAATTTAAATTTATAATAAATTTAAACTTAA
1 AATAAATTTAAATTTATAATAAATTTAAACTTAA
14866355 AATAAATTTAAATTTATAATAAATTTAAACTTAA
1 AATAAATTTAAATTTATAATAAATTTAAACTTAA
14866389 AATAAAT
1 AATAAAT
14866396 CTAACATGGA
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
34 92 0.87
35 14 0.13
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (34 bp):
AATAAATTTAAATTTATAATAAATTTAAACTTAA
Found at i:14866817 original size:39 final size:39
Alignment explanation
Indices: 14866764--14867688 Score: 256
Period size: 39 Copynumber: 23.7 Consensus size: 39
14866754 GAGGGTTGCA
*
14866764 ATCTG-CCTAGGCTCGGGGTAAGAGATTAGCTGATGGTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
*
14866802 ATCTGCCCCAGGCTCGGGGTAAGAGATT-G--AATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGG-TG
* * * * * *
14866839 CAATTTGCTCTAAGCTCGGGGAAAGAGA-T--CGGATGGCTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGG-TG
** * * *
14866878 CAATCTGCCCCAGGCTTTGGGTAAGAGATTGGCTGGTGATG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* *
14866919 ATCTACCCCAGGCTCGGGGTAAGAGA-T--CGGATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGG-TG
* * * * *
14866956 CAATCTAG-CTCAAGCTCGGGATAAGAGATTAGCTGGTGATG
1 --ATCT-GCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* ** * * * * *
14866997 ATTTGCCTTAAGCTCGGGGTAAGAGATCTAACGGCT-GTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT-TAGCTGATGGTG
* * * * * * * ***
14867036 ATCTGCCCCACGCTCGAGATAAGCGATTGGACAGCT-ACA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAG-CTGATGGTG
* * * * * *
14867075 ATCTACCCCAAGCTCGGGTTAAGAGATTGGCTGGTGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* *
14867114 ATCTGCCCTAGGCTTGGGGTAAGAGA-T--C-GAATGGCTG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTG-ATGG-TG
*** **
14867151 CAATCTATTCCAGGCTAAGGGTAAGAGA-T--C-GAATGGCTG
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTG-ATGG-TG
*** * * * *
14867190 CAATCTATTCCAGGCTCGAGGTAAGAGATTAGACGGCT-GTA
1 --ATCTGCCCCAGGCTCGGGGTAAGAGATTAG-CTGATGGTG
* * * *
14867231 ATCTGCCCTAGGCTCGGGGTAAGAGATTAGATGGCT-GTA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCT-GATGGTG
* * * *
14867270 ATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGGTGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* * * * * * * **
14867309 ATCTACCCCAAGCTCAGGGTAAGAGATCGAACAG-TTGCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT-TAGCTGATGGTG
* * *
14867348 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAATGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* * * *
14867387 ATCTGCCTCAGGCTCGGGGTACGAGATT--CAGATGGCTACA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGG-T--G
* ** * *
14867427 ATCTGCCCCAAGCTTAGGGTAAGAGATT-GACTGTTGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAG-CTGATGGTG
* * * ** *
14867466 ATCTGCCCTAGGCTCAAGGGTAAGAGATTGAAC-GACAGTA
1 ATCTGCCCCAGGCTC-GGGGTAAGAGATT-AGCTGATGGTG
* * * **
14867506 AGCTGCCCCAAGCTCGGGGTAAGAGATTAGATGGAT-GCA
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCT-GATGGTG
* * ** * * * * *
14867545 ATCTACCCCAAGCTTAGGGTAAGA-AATCGAATGGTGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAG-CTGATGGTG
* * * * * * *
14867584 ATCTGTCCCAGGCTCAGAGTAAGAGA-TCGATTGGTGATG
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAG-CTGATGGTG
* * * * *
14867623 ATCTGCCCCAAGCTGGGGGTAAGAGATTGGCTGATGTTC
1 ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
* *
14867662 ATCTGCCTCAGGCTCGAGGTAAGAGAT
1 ATCTGCCCCAGGCTCGGGGTAAGAGAT
14867689 CGAGTTGCTT
Statistics
Matches: 664, Mismatches: 176, Indels: 93
0.71 0.19 0.10
Matches are distributed among these distances:
35 1 0.00
36 11 0.02
37 10 0.02
38 24 0.04
39 530 0.80
40 65 0.10
41 7 0.01
42 13 0.02
43 2 0.00
44 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.23
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCGGGGTAAGAGATTAGCTGATGGTG
Found at i:14866903 original size:78 final size:77
Alignment explanation
Indices: 14866802--14867649 Score: 421
Period size: 78 Copynumber: 10.8 Consensus size: 77
14866792 GCTGATGGTG
* * * * * *
14866802 ATCTGCCCCAGGCTCGGGGTAAGAGATTGAATGGCTGCAATTTGCTCTAAGCTCGGGGAAAGAGA
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTG-AATCTACCCCAAGCTCGGGGTAAGAGA
14866867 TCGGATGGCTGCA
65 TCGGATGGCTGCA
* ** *
14866880 ATCTGCCCCAGGCTTTGGGTAAGAGATTGGCTGG-TGATGATCTACCCCAGGCTCGGGGTAAGAG
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTGA--ATCTACCCCAAGCTCGGGGTAAGAG
14866944 ATCGGATGGCTGCA
64 ATCGGATGGCTGCA
* * * * * * * **
14866958 ATCTAG-CTCAAGCTCGGGATAAGAGATT-AGCTGG-TGATGATTTGCCTTAAGCTCGGGGTAAG
1 ATCT-GCCCCAGGCTTGGGGTAAGAGATTGA-ATGGCTGA--ATCTACCCCAAGCTCGGGGTAAG
** * *
14867020 AGATCTAACGGCTGTA
62 AGATCGGATGGCTGCA
* * * * * * ** * *
14867036 ATCTGCCCCACGCTCGAGATAAGCGATTGGACAGCTACAATCTACCCCAAGCTCGGGTTAAGAGA
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCT-GAATCTACCCCAAGCTCGGGGTAAGAGA
* *
14867101 TTGGCTGG-TG-A
65 TCGGATGGCTGCA
* * ** * **
14867112 TGATCTGCCCTAGGCTTGGGGTAAGAGATCGAATGGCTGCAATCTATTCCAGGCTAAGGGTAAGA
1 --ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTG-AATCTACCCCAAGCTCGGGGTAAGA
*
14867177 GATCGAATGGCTGCA
63 GATCGGATGGCTGCA
*** * * * * * *
14867192 ATCTATTCCAGGCTCGAGGTAAGAGATT-AGACGGCTGTAATCTGCCCTAGGCTCGGGGTAAGAG
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGA-ATGGCTG-AATCTACCCCAAGCTCGGGGTAAGAG
** *
14867256 ATTAGATGGCTGTA
64 ATCGGATGGCTGCA
* * ** *
14867270 ATCTGCCCTAGGCTCGGGGTAAGAGATTGGCTGG-TGATGATCTACCCCAAGCTCAGGGTAAGAG
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTGA--ATCTACCCCAAGCTCGGGGTAAGAG
* ** *
14867334 ATCGAACAGTTGCA
64 ATCGGATGGCTGCA
* * * * * *
14867348 ATCTGCCCCAGGCTCGGGGTAAGAGATTGGCTAAT-GATG-ATCTGCCTCAGGCTCGGGGTACGA
1 ATCTGCCCCAGGCTTGGGGTAAGAGATT-G--AATGGCTGAATCTACCCCAAGCTCGGGGTAAGA
* *
14867411 GATTCAGATGGCTACA
63 GA-TCGGATGGCTGCA
* * * * * * * *
14867427 ATCTGCCCCAAGCTTAGGGTAAGAGATTGACT-GTTGATGATCTGCCCTAGGCTCAAGGGTAAGA
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTGA--ATCTACCCCAAGCTC-GGGGTAAGA
* * * * * *
14867491 GATTGAACGACAGTA
63 GATCGGATGGCTGCA
* * * * ** *
14867506 AGCTGCCCCAAGCTCGGGGTAAGAGATT-AGATGGATGCAATCTACCCCAAGCTTAGGGTAAGAA
1 ATCTGCCCCAGGCTTGGGGTAAGAGATTGA-ATGGCTG-AATCTACCCCAAGCTCGGGGTAAGAG
*
14867570 ATCGAATGG-TG-A
64 ATCGGATGGCTGCA
* ** * * * * *
14867582 TGATCTGTCCCAGGCTCAGAGTAAGAGATCGATTGG-TGATGATCTGCCCCAAGCTGGGGGTAAG
1 --ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTGA--ATCTACCCCAAGCTCGGGGTAAG
14867646 AGAT
62 AGAT
14867650 TGGCTGATGT
Statistics
Matches: 578, Mismatches: 158, Indels: 68
0.72 0.20 0.08
Matches are distributed among these distances:
76 10 0.02
77 11 0.02
78 445 0.77
79 93 0.16
80 15 0.03
81 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (77 bp):
ATCTGCCCCAGGCTTGGGGTAAGAGATTGAATGGCTGAATCTACCCCAAGCTCGGGGTAAGAGAT
CGGATGGCTGCA
Found at i:14866982 original size:117 final size:116
Alignment explanation
Indices: 14866760--14867649 Score: 541
Period size: 117 Copynumber: 7.6 Consensus size: 116
14866750 ACGAGAGGGT
* *
14866760 TGCAATCTG-CCTAGGCTCGGGGTAAGAGATTAGCT-GATGGTGATCTGCCCCAGGCTCGGGGTA
1 TGCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGCTGGCTGATGATCTGCCCCAGGCTCGGGGTA
* * ** * *
14866823 AGAGATTGAATGGCTGCAAT-TTGCTCTAAGCTCGGGGAAAGAGATCGGATGG
66 AGAGATCGGATGGCTGCAATCTACCTC-AAGCTC-GGGTAAGAGATTGGATGG
* ** * *
14866875 CTGCAATCTGCCCCAGGCTTTGGGTAAGAGATTGGCTGG-TGATGATCTACCCCAGGCTCGGGGT
1 -TGCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGCTGGCTGATGATCTGCCCCAGGCTCGGGGT
* * *
14866939 AAGAGATCGGATGGCTGCAATCTAGCTCAAGCTCGGGATAAGAGATTAGCTGG
65 AAGAGATCGGATGGCTGCAATCTACCTCAAGCTCGGG-TAAGAGATTGGATGG
* * * * * * *
14866992 TG-ATGATTTGCCTTAAGCTCGGGGTAAGAGATCTAAC-GGCTG-TAATCTGCCCCACGCTCGAG
1 TGCA--ATCTGCCCTAGGCTCGGGGTAAGAGAT-TAGCTGGCTGATGATCTGCCCCAGGCTCGGG
* * * ** * * *
14867054 ATAAGCGATTGGACAGCTACAATCTACCCCAAGCTCGGGTTAAGAGATTGGCTGG
63 GTAAGAGATCGGATGGCTGCAATCTACCTCAAGCTCGGG-TAAGAGATTGGATGG
* * * *** **
14867109 TG-ATGATCTGCCCTAGGCTTGGGGTAAGAGA-TCGAATGGCTGCA--ATCTATTCCAGGCTAAG
1 TGCA--ATCTGCCCTAGGCTCGGGGTAAGAGATTAG-CTGGCTG-ATGATCTGCCCCAGGCTCGG
* * * * *
14867170 GGTAAGAGATCGAATGGCTGCAATCTA-TTCCAGGCTCGAGGTAAGAGATTAGACGG
62 GGTAAGAGATCGGATGGCTGCAATCTACCT-CAAGCTCG-GGTAAGAGATTGGATGG
* * * *
14867226 CTGTAATCTGCCCTAGGCTCGGGGTAAGAGATTAGATGGCTG-TAATCTGCCCTAGGCTCGGGGT
1 -TGCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGCTGGCTGATGATCTGCCCCAGGCTCGGGGT
* * * * * * *
14867290 AAGAGATTGGCTGG-TG-ATGATCTACCCCAAGCTCAGGGTAAGAGATCGAACAGT
65 AAGAGATCGGATGGCTGCA--ATCTACCTCAAGCTC-GGGTAAGAGATTGGA-TGG
* * ** *
14867344 TGCAATCTGCCCCAGGCTCGGGGTAAGAGATTGGCT-AATGATGATCTGCCTCAGGCTCGGGGTA
1 TGCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGCTGGCTGATGATCTGCCCCAGGCTCGGGGTA
* * * * * * *
14867408 CGAGATTCAGATGGCTACAATCTGCCCCAAGCTTAGGGTAAGAGATT-GACTGT
66 AGAGA-TCGGATGGCTGCAATCTACCTCAAGC-TCGGGTAAGAGATTGGA-TGG
* * * * * * *
14867461 TG-ATGATCTGCCCTAGGCTCAAGGGTAAGAGATTGAAC-GACAG-TAAGCTGCCCCAAGCTCGG
1 TGCA--ATCTGCCCTAGGCTC-GGGGTAAGAGATT-AGCTGGCTGATGATCTGCCCCAGGCTCGG
** * * * * * *
14867523 GGTAAGAGATTAGATGGATGCAATCTACCCCAAGCTTAGGGTAAGAAATCGAATGG
62 GGTAAGAGATCGGATGGCTGCAATCTACCTCAAGC-TCGGGTAAGAGATTGGATGG
* * * * * *
14867579 TG-ATGATCTGTCCC-AGGCTCAGAGTAAGAGA-TCGATTGG-TGATGATCTGCCCCAAGCTGGG
1 TGCA--ATCTG-CCCTAGGCTCGGGGTAAGAGATTAG-CTGGCTGATGATCTGCCCCAGGCTCGG
14867640 GGTAAGAGAT
62 GGTAAGAGAT
14867650 TGGCTGATGT
Statistics
Matches: 607, Mismatches: 128, Indels: 77
0.75 0.16 0.09
Matches are distributed among these distances:
115 3 0.00
116 21 0.03
117 424 0.70
118 113 0.19
119 42 0.07
120 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (116 bp):
TGCAATCTGCCCTAGGCTCGGGGTAAGAGATTAGCTGGCTGATGATCTGCCCCAGGCTCGGGGTA
AGAGATCGGATGGCTGCAATCTACCTCAAGCTCGGGTAAGAGATTGGATGG
Found at i:14879656 original size:29 final size:29
Alignment explanation
Indices: 14879572--14880007 Score: 327
Period size: 30 Copynumber: 14.9 Consensus size: 29
14879562 AAAGGGGTCG
* * *
14879572 AAAATG-AAGTTTCGAAGAGTTTG-GGGTT
1 AAAATGTAATTTTTGAA-AGTTTGAGGGTA
* *
14879600 AAAATGTAATTTTGGAAAGTTTTAAGGGTA
1 AAAATGTAATTTTTGAAAG-TTTGAGGGTA
* * * *
14879630 AAAACGTGATTTTTGAAAGTTCGAGGGCA
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
* * * *
14879659 AAAATGTGA-TTTTGGAAGTTTGGGGGCA
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
* *
14879687 AAAATGTAATTTTTGGAAGTTTGAGGGGA
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
* * *
14879716 AAAATGTAATTTTTAGGAAGTTTAAGGGTT
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTA
* *
14879746 AAAATGTAATTTTTGGAAGTTTAAGGGTA
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
*
14879775 AAAATGTAATTTTTAAGAAGTTT-AGGGGTA
1 AAAATGTAATTTTTGA-AAGTTTGA-GGGTA
* *
14879805 ACAATGTAATTTTTAAGAAGTTT-AGGGGTA
1 AAAATGTAATTTTTGA-AAGTTTGA-GGGTA
** * *
14879835 AAAATACAATTTTTGGAAGTTTGAGGGAA
1 AAAATGTAATTTTTGAAAGTTTGAGGGTA
* *
14879864 AAAATGTAATTTTTGGAAAGTTTAAGGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTA
* *
14879894 AAAATGTAATTTTTAAAAAGTTCGAGGGT-
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTA
* * * *
14879923 -CAATGTAATTTTTGGAAAGTTCGGGGGTC
1 AAAATGTAATTTTT-GAAAGTTTGAGGGTA
* * *
14879952 AAAATGT-ATTTTTGTGAAGTATAAGGGTCAA
1 AAAATGTAATTTTTG-AAAGTTTGAGGGT--A
14879983 AAAAT-T-ATTTTTGGAAAGTTT-AGGG
1 AAAATGTAATTTTT-GAAAGTTTGAGGG
14880008 ACCTTTTGGG
Statistics
Matches: 340, Mismatches: 53, Indels: 29
0.81 0.13 0.07
Matches are distributed among these distances:
28 57 0.17
29 126 0.37
30 151 0.44
31 6 0.02
ACGTcount: A:0.36, C:0.03, G:0.26, T:0.35
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAGTTTGAGGGTA
Found at i:14879663 original size:59 final size:57
Alignment explanation
Indices: 14879600--14880007 Score: 310
Period size: 59 Copynumber: 7.0 Consensus size: 57
14879590 GTTTGGGGTT
* * * *
14879600 AAAATGTAATTTTGGAAAGTTTTAAGGGTAAAAACGTGATTTTTGAAAGTTCGAGGGCA
1 AAAATGTAATTTTGG-AAG-TTTAAGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGCA
* ** * *
14879659 AAAATGTGATTTTGGAAGTTTGGGGGCAAAAATGTAATTTTTGGAAGTTTGAGGGGA
1 AAAATGTAATTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGCA
* * *
14879716 AAAATGTAATTTTTAGGAAGTTTAAGGGTTAAAATGTAATTTTTGGAAGTTTAAGGGTA
1 AAAATGTAA-TTTT-GGAAGTTTAAGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGCA
* * * * *
14879775 AAAATGTAATTTTTAAGAAGTTTAGGGGTAACAATGTAATTTTTAAGAAGTTT-AGGGGTA
1 AAAATGTAA-TTTT-GGAAGTTTAAGGGTAAAAATGTAATTTTT-GGAAGTTTGA-GGGCA
** * * *
14879835 AAAATACAATTTTTGGAAGTTTGAGGGAAAAAATGTAATTTTTGGAAAGTTTAAGGGTC-
1 AAAATGTAA-TTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGG-AAGTTTGAGGG-CA
** ** * * *
14879894 AAAATGTAATTTTTAAAAAGTTCGAGGGT--CAATGTAATTTTTGGAAAGTTCGGGGGTC-
1 AAAATGTAA-TTTT-GGAAGTTTAAGGGTAAAAATGTAATTTTTGG-AAGTTTGAGGG-CA
* *
14879952 AAAATGTATTTTTGTGAAGTATAAGGGTCAAAAAAT-T-ATTTTTGGAAAGTTT-AGGG
1 AAAATGTAATTTTG-GAAGTTTAAGGGT--AAAAATGTAATTTTTGG-AAGTTTGAGGG
14880008 ACCTTTTGGG
Statistics
Matches: 287, Mismatches: 49, Indels: 27
0.79 0.13 0.07
Matches are distributed among these distances:
57 52 0.18
58 44 0.15
59 152 0.53
60 36 0.13
61 3 0.01
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.35
Consensus pattern (57 bp):
AAAATGTAATTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTGGAAGTTTGAGGGCA
Found at i:14879846 original size:89 final size:87
Alignment explanation
Indices: 14879668--14879915 Score: 334
Period size: 89 Copynumber: 2.8 Consensus size: 87
14879658 AAAAATGTGA
* * * *
14879668 TTTTGGAAGTTTGGGGGCAAAAATGTAATTTTTGGAAGTTTGAGGGGAAAAATGTAATTTTTAGG
1 TTTTGGAAGTTTGAGGGAAAAAATGTAATTTTTGGAAGTTT-AGGGGTAAAATGTAATTTTTAAG
* **
14879733 AAGTTTAAGGGTTAAAATGTAAT
65 AAGTTTAAGGGTAAAAATACAAT
* * *
14879756 TTTTGGAAGTTTAAGGGTAAAAATGTAATTTTTAAGAAGTTTAGGGGTAACAATGTAATTTTTAA
1 TTTTGGAAGTTTGAGGGAAAAAATGTAATTTTT-GGAAGTTTAGGGGTAA-AATGTAATTTTTAA
*
14879821 GAAGTTTAGGGGTAAAAATACAAT
64 GAAGTTTAAGGGTAAAAATACAAT
*
14879845 TTTTGGAAGTTTGAGGGAAAAAATGTAATTTTTGGAAAGTTTAAGGGTCAAAATGTAATTTTTAA
1 TTTTGGAAGTTTGAGGGAAAAAATGTAATTTTTGG-AAGTTTAGGGGT-AAAATGTAATTTTTAA
*
14879910 AAAGTT
64 GAAGTT
14879916 CGAGGGTCAA
Statistics
Matches: 141, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
88 38 0.27
89 101 0.72
90 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (87 bp):
TTTTGGAAGTTTGAGGGAAAAAATGTAATTTTTGGAAGTTTAGGGGTAAAATGTAATTTTTAAGA
AGTTTAAGGGTAAAAATACAAT
Found at i:14880002 original size:87 final size:87
Alignment explanation
Indices: 14879600--14879994 Score: 229
Period size: 89 Copynumber: 4.5 Consensus size: 87
14879590 GTTTGGGGTT
* * * *
14879600 AAAATGTAA-TTTTGGAAAGTTTTAAGGGT-AAAAACGTGATTTTT-GAAAGTTCGAGGG-CAAA
1 AAAATGTAATTTTTGGAAAG-TATAAGGGTCAAAAA-ATAATTTTTAAAAAGTTCGAGGGTC---
* * * *
14879661 AATGTGA-TTTTGGAAGTTTGGGGGCA
61 AATGTAATTTTTGGAAGTTCGAGGGAA
* * * * ** ** *
14879687 AAAATGTAATTTTTGG-AAGTTTGAGGG-GAAAAATGTAATTTTTAGGAAGTTTAAGGGTTAAAA
1 AAAATGTAATTTTTGGAAAGTATAAGGGTCAAAAA-ATAATTTTTAAAAAGTTCGAGGG-T-CAA
** *
14879750 TGTAATTTTTGGAAGTTTAAGGGTA
63 TGTAATTTTTGGAAGTTCGAGGGAA
* * * ** * * *
14879775 AAAATGTAATTTTT-AAGAAGTTTAGGGGT-AACAATGTAATTTTTAAGAAGTT-TAGGGGTAAA
1 AAAATGTAATTTTTGGA-AAGTATAAGGGTCAA-AAAATAATTTTTAAAAAGTTCGA-GGGT--C
** *
14879837 AATACAATTTTTGGAAGTTTGAGGGAA
61 AATGTAATTTTTGGAAGTTCGAGGGAA
* **
14879864 AAAATGTAATTTTTGGAAAGTTTAAGGGTCAAAATGTAATTTTTAAAAAGTTCGAGGGTCAATGT
1 AAAATGTAATTTTTGGAAAGTATAAGGGTCAAAAAATAATTTTTAAAAAGTTCGAGGGTCAATGT
* **
14879929 AATTTTTGGAAAGTTCGGGGGTC
66 AATTTTTGG-AAGTTCGAGGGAA
*
14879952 AAAATGT-ATTTTTGTG-AAGTATAAGGGTCAAAAAATTATTTTT
1 AAAATGTAATTTTTG-GAAAGTATAAGGGTCAAAAAATAATTTTT
14879995 GGAAAGTTTA
Statistics
Matches: 254, Mismatches: 36, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
86 20 0.08
87 70 0.28
88 55 0.22
89 103 0.41
90 6 0.02
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (87 bp):
AAAATGTAATTTTTGGAAAGTATAAGGGTCAAAAAATAATTTTTAAAAAGTTCGAGGGTCAATGT
AATTTTTGGAAGTTCGAGGGAA
Found at i:14881765 original size:6 final size:6
Alignment explanation
Indices: 14881754--14881804 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
14881744 TAATTTAGAA
** * *
14881754 TAAATT TAAATT TAAAAA TAAATT TAAATT TAAA-A TAAATT TAAACT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
14881801 TAAA
1 TAAA
14881805 ATAAATCTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (6 bp):
TAAATT
Found at i:14881773 original size:18 final size:17
Alignment explanation
Indices: 14881745--14881815 Score: 106
Period size: 17 Copynumber: 4.1 Consensus size: 17
14881735 GGACATTTTT
*
14881745 AATTTAGAATAAATTTA
1 AATTTAAAATAAATTTA
14881762 AATTTAAAAATAAATTTA
1 AATTT-AAAATAAATTTA
14881780 AATTTAAAATAAATTTA
1 AATTTAAAATAAATTTA
* *
14881797 AACTTAAAATAAATCTA
1 AATTTAAAATAAATTTA
14881814 AA
1 AA
14881816 ATGGGTTCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
17 34 0.68
18 16 0.32
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (17 bp):
AATTTAAAATAAATTTA
Found at i:14881784 original size:35 final size:34
Alignment explanation
Indices: 14881745--14881815 Score: 106
Period size: 35 Copynumber: 2.1 Consensus size: 34
14881735 GGACATTTTT
* * *
14881745 AATTTAGAATAAATTTAAATTTAAAAATAAATTTA
1 AATTTAAAATAAATTTAAACTT-AAAATAAATCTA
14881780 AATTTAAAATAAATTTAAACTTAAAATAAATCTA
1 AATTTAAAATAAATTTAAACTTAAAATAAATCTA
14881814 AA
1 AA
14881816 ATGGGTTCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 13 0.39
35 20 0.61
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (34 bp):
AATTTAAAATAAATTTAAACTTAAAATAAATCTA
Found at i:14883599 original size:18 final size:18
Alignment explanation
Indices: 14883576--14883610 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14883566 TCATATCATT
14883576 TTATAATTTTTTTAATAA
1 TTATAATTTTTTTAATAA
14883594 TTATAATTTTTTTAATA
1 TTATAATTTTTTTAATA
14883611 TTTTTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATAATTTTTTTAATAA
Found at i:14893625 original size:26 final size:26
Alignment explanation
Indices: 14893536--14893626 Score: 112
Period size: 26 Copynumber: 3.5 Consensus size: 26
14893526 TAGATCTTAT
*
14893536 GAGCCTAGACA-AAGTTTAGCTCTTTC
1 GAGCCTAGACAGAA-TTTAGCTCATTC
* * *
14893562 CAGCCTAGATAAAATTTAGCTCATTC
1 GAGCCTAGACAGAATTTAGCTCATTC
* *
14893588 AAGCATAGACAGAATTTAGCTCATTC
1 GAGCCTAGACAGAATTTAGCTCATTC
14893614 GAGCCTAGACAGA
1 GAGCCTAGACAGA
14893627 GAAACGCTCT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 53 0.96
27 2 0.04
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (26 bp):
GAGCCTAGACAGAATTTAGCTCATTC
Found at i:14899461 original size:16 final size:17
Alignment explanation
Indices: 14899440--14899477 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
14899430 TACGTATGGC
* *
14899440 TTCATTTGTTTTCA-AT
1 TTCATTTGGTGTCATAT
14899456 TTCATTTGGTGTCATAT
1 TTCATTTGGTGTCATAT
14899473 TTCAT
1 TTCAT
14899478 CATTTGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (17 bp):
TTCATTTGGTGTCATAT
Found at i:14909190 original size:17 final size:19
Alignment explanation
Indices: 14909158--14909192 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
14909148 CTTAAAATTT
14909158 AACCCAACACCCAAATAAA
1 AACCCAACACCCAAATAAA
14909177 AACCCAA-A-CCAAATAA
1 AACCCAACACCCAAATAA
14909193 CCATTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.60, C:0.34, G:0.00, T:0.06
Consensus pattern (19 bp):
AACCCAACACCCAAATAAA
Found at i:14912989 original size:43 final size:42
Alignment explanation
Indices: 14912940--14913029 Score: 153
Period size: 43 Copynumber: 2.1 Consensus size: 42
14912930 TCAAATAAGC
**
14912940 TTATTCAAAGTTGTTATTTTCTTAATTTTATTTTGACTAAAT
1 TTATTCAAAGTTGCCATTTTCTTAATTTTATTTTGACTAAAT
14912982 TATATTCAAAGTTGCCATTTTCTTAATTTTATTTTGACTAAAT
1 T-TATTCAAAGTTGCCATTTTCTTAATTTTATTTTGACTAAAT
14913025 TTATT
1 TTATT
14913030 TATTTTAAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 5 0.11
43 40 0.89
ACGTcount: A:0.29, C:0.09, G:0.07, T:0.56
Consensus pattern (42 bp):
TTATTCAAAGTTGCCATTTTCTTAATTTTATTTTGACTAAAT
Found at i:14914991 original size:18 final size:18
Alignment explanation
Indices: 14914954--14915002 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
14914944 CAAAAATACC
*
14914954 TTTCTTTCTTTTT-TCTT
1 TTTCTTTCTTTTTCTCAT
*
14914971 TTTCCTTCTTTTTCTCAT
1 TTTCTTTCTTTTTCTCAT
*
14914989 TTTGTTTCTTTTTC
1 TTTCTTTCTTTTTC
14915003 AAATGACGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTCTTTCTTTTTCTCAT
Found at i:14917538 original size:16 final size:16
Alignment explanation
Indices: 14917517--14917573 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
14917507 AGTTTTTGAA
14917517 GGGTTTTTCGAGGCAT
1 GGGTTTTTCGAGGCAT
* * *
14917533 GGGTTTTATCCATTTG-AA
1 GGGTTTT-TCGA--GGCAT
14917551 GGGTTTTTCGAGGCAT
1 GGGTTTTTCGAGGCAT
14917567 GGGTTTT
1 GGGTTTT
14917574 ATCCATTGTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
15 1 0.03
16 15 0.48
17 6 0.19
18 8 0.26
19 1 0.03
ACGTcount: A:0.14, C:0.11, G:0.33, T:0.42
Consensus pattern (16 bp):
GGGTTTTTCGAGGCAT
Found at i:14917550 original size:34 final size:34
Alignment explanation
Indices: 14917511--14917580 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
14917501 GGAAGGAGTT
14917511 TTTGAAGGGTTTTTCGAGGCATGGGTTTTATCCA
1 TTTGAAGGGTTTTTCGAGGCATGGGTTTTATCCA
14917545 TTTGAAGGGTTTTTCGAGGCATGGGTTTTATCCA
1 TTTGAAGGGTTTTTCGAGGCATGGGTTTTATCCA
14917579 TT
1 TT
14917581 GTAATAGAAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.17, C:0.11, G:0.29, T:0.43
Consensus pattern (34 bp):
TTTGAAGGGTTTTTCGAGGCATGGGTTTTATCCA
Found at i:14929922 original size:3 final size:3
Alignment explanation
Indices: 14929916--14929973 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
14929906 AAATATTAGG
14929916 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14929964 AAT AAT AAT A
1 AAT AAT AAT A
14929974 GAAAACAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Done.