Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 72 of 144
Found at i:15261925 original size:28 final size:26
Alignment explanation
Indices: 15261871--15261942 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 26
15261861 ACGAAAATAT
15261871 ATTTAAAAATATAGAAAAT-TATGAAAA
1 ATTTAAAAATATAGAAAATGTA--AAAA
15261898 ATTATAAAAATATAGAAAA-GTGAAAAA
1 ATT-TAAAAATATAGAAAATGT-AAAAA
*
15261925 ATTTAAAAAT-TAAAAAAT
1 ATTTAAAAATATAGAAAAT
15261943 ATCATTACAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
25 6 0.15
26 7 0.17
27 10 0.25
28 16 0.40
29 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (26 bp):
ATTTAAAAATATAGAAAATGTAAAAA
Found at i:15262380 original size:10 final size:9
Alignment explanation
Indices: 15262286--15262464 Score: 62
Period size: 9 Copynumber: 20.4 Consensus size: 9
15262276 TTAAATTTGC
15262286 TTTATAATT
1 TTTATAATT
*
15262295 TTTAT-GTT
1 TTTATAATT
15262303 ATTTATAATAT
1 -TTTATAAT-T
15262314 TTTAT-ATAT
1 TTTATAAT-T
* **
15262323 TTTAAAAAA
1 TTTATAATT
*
15262332 TTCATAATT
1 TTTATAATT
*
15262341 TTTACAACTAT
1 TTTATAA-T-T
15262352 TTT-T-ATT
1 TTTATAATT
15262359 TTTCATAATT
1 TTT-ATAATT
*
15262369 TATAT-ATT
1 TTTATAATT
15262377 TTTATAA--
1 TTTATAATT
15262384 TTTA-AATCT
1 TTTATAAT-T
*
15262393 TTT-T--TA
1 TTTATAATT
15262399 TTTATAATT
1 TTTATAATT
*
15262408 TTT-TACACT
1 TTTATA-ATT
15262417 TTTAT-ATT
1 TTTATAATT
*
15262425 TATAT-ATT
1 TTTATAATT
15262433 TTTATAATT
1 TTTATAATT
* *
15262442 ATCTATATTT
1 -TTTATAATT
*
15262452 TTTATTATT
1 TTTATAATT
15262461 TTTA
1 TTTA
15262465 ATTTTTTTAA
Statistics
Matches: 124, Mismatches: 25, Indels: 42
0.65 0.13 0.22
Matches are distributed among these distances:
6 5 0.04
7 10 0.08
8 25 0.20
9 58 0.47
10 21 0.17
11 5 0.04
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:15262395 original size:17 final size:16
Alignment explanation
Indices: 15262356--15262412 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
15262346 AACTATTTTT
* *
15262356 ATTTTTCATAATTTAT
1 ATTTTTTATAATTTAA
15262372 ATATTTTTATAATTTAA
1 AT-TTTTTATAATTTAA
15262389 ATCTTTTT-T-ATTTATA
1 AT-TTTTTATAATTTA-A
15262405 ATTTTTTA
1 ATTTTTTA
15262413 CACTTTTATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
15 10 0.29
16 6 0.17
17 19 0.54
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTTTATAATTTAA
Found at i:15262410 original size:15 final size:15
Alignment explanation
Indices: 15262364--15262412 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
15262354 TTATTTTTCA
15262364 TAATTTATATATTTTT
1 TAATTTATA-ATTTTT
15262380 ATAATTTA-AATCTTTT
1 -TAATTTATAAT-TTTT
*
15262396 TTATTTATAATTTTT
1 TAATTTATAATTTTT
15262411 TA
1 TA
15262413 CACTTTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 13 0.46
16 8 0.29
17 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
TAATTTATAATTTTT
Found at i:15262443 original size:16 final size:17
Alignment explanation
Indices: 15262416--15262453 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
15262406 TTTTTTACAC
*
15262416 TTTTATATTTA-TATAT
1 TTTTATAATTACTATAT
15262432 TTTTATAATTATCTATAT
1 TTTTATAATTA-CTATAT
15262450 TTTT
1 TTTT
15262454 TATTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 10 0.53
18 9 0.47
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTATAATTACTATAT
Found at i:15262734 original size:13 final size:13
Alignment explanation
Indices: 15262718--15262742 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15262708 ATTTCAAAAC
15262718 TATACATAAATTA
1 TATACATAAATTA
15262731 TATACATAAATT
1 TATACATAAATT
15262743 TTGATTTTGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
TATACATAAATTA
Found at i:15264728 original size:20 final size:20
Alignment explanation
Indices: 15264705--15264742 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
15264695 TTGGGTGTAA
15264705 GAATTTTAAGAACAGGTTTC
1 GAATTTTAAGAACAGGTTTC
* *
15264725 GAATTTTAGGTACAGGTT
1 GAATTTTAAGAACAGGTT
15264743 CTTTTAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.37
Consensus pattern (20 bp):
GAATTTTAAGAACAGGTTTC
Found at i:15265274 original size:29 final size:30
Alignment explanation
Indices: 15265184--15265274 Score: 76
Period size: 30 Copynumber: 3.0 Consensus size: 30
15265174 TTAAATATGA
* * * *
15265184 ATAATTAAATTAAAATTAAAATTTTATGTAT
1 ATAATTGAATTAAAA-TCAAAGTTCATGTAT
* * * * *
15265215 ATATTTGAATTATAATTAAATTTCATATAT
1 ATAATTGAATTAAAATCAAAGTTCATGTAT
*
15265245 ATAATTGCA-TAAAATCAAAGTTCATGTAT
1 ATAATTGAATTAAAATCAAAGTTCATGTAT
15265274 A
1 A
15265275 ATATTGTATA
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
29 17 0.35
30 19 0.40
31 12 0.25
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.43
Consensus pattern (30 bp):
ATAATTGAATTAAAATCAAAGTTCATGTAT
Found at i:15265612 original size:16 final size:16
Alignment explanation
Indices: 15265591--15265630 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
15265581 TCACACTCTC
15265591 CTAAGGGTCCATTCCA
1 CTAAGGGTCCATTCCA
*
15265607 CTAAGGGTTCATTCCA
1 CTAAGGGTCCATTCCA
*
15265623 ATAAGGGT
1 CTAAGGGT
15265631 ATGAGTCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (16 bp):
CTAAGGGTCCATTCCA
Found at i:15268882 original size:25 final size:24
Alignment explanation
Indices: 15268854--15268908 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 24
15268844 AAAAATATAG
15268854 TTAATAAATAAATACAATTTTATT
1 TTAATAAATAAATACAATTTTATT
* *
15268878 CTTAAAAAATAGATACAATTTTATT
1 -TTAATAAATAAATACAATTTTATT
15268903 TTAATA
1 TTAATA
15268909 TCATTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 5 0.19
25 22 0.81
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (24 bp):
TTAATAAATAAATACAATTTTATT
Found at i:15275347 original size:29 final size:30
Alignment explanation
Indices: 15275285--15275350 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
15275275 AATTTACAAG
* * *
15275285 AATTGCATCAAATCGAAATTTCATATATAA
1 AATTGCATAAAATCGAAAGTTCATATAGAA
* *
15275315 AATTGCATAAAATC-AAAGTTCATGTAGAC
1 AATTGCATAAAATCGAAAGTTCATATAGAA
15275344 AATTGCA
1 AATTGCA
15275351 CATTAAACCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 18 0.58
30 13 0.42
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (30 bp):
AATTGCATAAAATCGAAAGTTCATATAGAA
Found at i:15276031 original size:16 final size:19
Alignment explanation
Indices: 15276005--15276047 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
15275995 CGTTACGATA
15276005 ATAATTATTTT-TAAA-AT-
1 ATAA-TATTTTATAAAGATC
15276022 ATAATATTTTATAAAGATC
1 ATAATATTTTATAAAGATC
15276041 ATAATAT
1 ATAATAT
15276048 ATTGGGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.26
17 8 0.35
18 2 0.09
19 7 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
ATAATATTTTATAAAGATC
Found at i:15276409 original size:21 final size:22
Alignment explanation
Indices: 15276385--15276436 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
15276375 GTTTAGGGTG
**
15276385 TTTAAATTAGAGT-TTTGGTAT
1 TTTAAATTAGAGTGTCGGGTAT
* * *
15276406 TTTATATAAGGGTGTCGGGTAT
1 TTTAAATTAGAGTGTCGGGTAT
15276428 TTTAAATTA
1 TTTAAATTA
15276437 AGGGCTATGG
Statistics
Matches: 23, Mismatches: 7, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.29, C:0.02, G:0.21, T:0.48
Consensus pattern (22 bp):
TTTAAATTAGAGTGTCGGGTAT
Found at i:15289851 original size:128 final size:128
Alignment explanation
Indices: 15289623--15289935 Score: 554
Period size: 128 Copynumber: 2.4 Consensus size: 128
15289613 AATGTGACCG
* *
15289623 AATTGAGTAACCGGGTTGAGGTACTTGACTTGTTATCTCAATTCGCATAAAAAGATTCTAGTGAC
1 AATTGAGTAACCGGGTTGAGGTACTTGGCTTGTCATCTCAATTCGCATAAAAAGATTCTAGTGAC
*
15289688 GAATCGAAACTTGTAACACTCCACTAACCGAGCTACCTTGAAAAACAAGCTATCAACTTTTCA
66 GAACCGAAACTTGTAACACTCCACTAACCGAGCTACCTTGAAAAACAAGCTATCAACTTTTCA
15289751 AATTGAGTAACCGGGTTGAGGTACTTGGCTTGTCATCTCAATTCGCATAAAAAGATTCTAGTGAC
1 AATTGAGTAACCGGGTTGAGGTACTTGGCTTGTCATCTCAATTCGCATAAAAAGATTCTAGTGAC
* *
15289816 GAACCGAAACTTGTAACACTCCACTAACCGAGCTACCTTGAAAAATAAGCTATCGACTTTTCA
66 GAACCGAAACTTGTAACACTCCACTAACCGAGCTACCTTGAAAAACAAGCTATCAACTTTTCA
* * *
15289879 AATTGAGTAACCGAGTTGAGGTGCTTGGCTTGTCATCTCAATTCGCGTAAAAAGATT
1 AATTGAGTAACCGGGTTGAGGTACTTGGCTTGTCATCTCAATTCGCATAAAAAGATT
15289936 TGATTAGGTC
Statistics
Matches: 177, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
128 177 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (128 bp):
AATTGAGTAACCGGGTTGAGGTACTTGGCTTGTCATCTCAATTCGCATAAAAAGATTCTAGTGAC
GAACCGAAACTTGTAACACTCCACTAACCGAGCTACCTTGAAAAACAAGCTATCAACTTTTCA
Found at i:15290501 original size:12 final size:13
Alignment explanation
Indices: 15290484--15290530 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
15290474 TGTTATTTTC
15290484 TTATTTTT-GTTT
1 TTATTTTTAGTTT
*
15290496 TTATTTTTATTTT
1 TTATTTTTAGTTT
*
15290509 TTATTTTATAAGTTG
1 TTATTTT-T-AGTTT
15290524 TTATTTT
1 TTATTTT
15290531 CTTTTGACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 8 0.28
13 10 0.34
14 1 0.03
15 10 0.34
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (13 bp):
TTATTTTTAGTTT
Found at i:15290509 original size:13 final size:13
Alignment explanation
Indices: 15290476--15290515 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
15290466 TCAAAAATTG
15290476 TTATTTTCTTATTT
1 TTATTTT-TTATTT
*
15290490 TT-GTTTTTATTT
1 TTATTTTTTATTT
15290502 TTATTTTTTATTT
1 TTATTTTTTATTT
15290515 T
1 T
15290516 ATAAGTTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 8 0.35
13 13 0.57
14 2 0.09
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (13 bp):
TTATTTTTTATTT
Found at i:15294518 original size:31 final size:31
Alignment explanation
Indices: 15294476--15294536 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
15294466 TAGTCCTATG
**
15294476 ACTTAAATAAAATTTTTTAAATAGTACAGTA
1 ACTTAAATAAAAACTTTTAAATAGTACAGTA
* * *
15294507 ACTTAAGTAAAAACTTTTCAATAGTTCAGT
1 ACTTAAATAAAAACTTTTAAATAGTACAGT
15294537 GATCAAATTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (31 bp):
ACTTAAATAAAAACTTTTAAATAGTACAGTA
Found at i:15304174 original size:22 final size:21
Alignment explanation
Indices: 15304143--15304215 Score: 92
Period size: 22 Copynumber: 3.3 Consensus size: 21
15304133 AGGAGGAAGA
15304143 TATGTGGCAATTTATCAGTAAT
1 TATGTGGCAATTTATC-GTAAT
* *
15304165 TACGTGGCAATTTATCTGCAAT
1 TATGTGGCAATTTATC-GTAAT
*
15304187 TATGTGGCTATTTATCGATAAT
1 TATGTGGCAATTTATCG-TAAT
15304209 TATGTGG
1 TATGTGG
15304216 TGGCTTGTCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
21 1 0.02
22 43 0.98
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (21 bp):
TATGTGGCAATTTATCGTAAT
Found at i:15306318 original size:18 final size:18
Alignment explanation
Indices: 15306295--15306332 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
15306285 CCTTAACAAA
15306295 ATAATGAGACTGTAAGTG
1 ATAATGAGACTGTAAGTG
15306313 ATAATGAGACTGTAAGTG
1 ATAATGAGACTGTAAGTG
15306331 AT
1 AT
15306333 GTAACTGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.29
Consensus pattern (18 bp):
ATAATGAGACTGTAAGTG
Found at i:15317825 original size:23 final size:24
Alignment explanation
Indices: 15317796--15317846 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
15317786 AATTATTCAT
*
15317796 TTTATTTTA-ATTTGCTTTGACAA
1 TTTATTTTATATTTGCGTTGACAA
* *
15317819 TTTATTTTATGTTTGCGTTGACAG
1 TTTATTTTATATTTGCGTTGACAA
15317843 TTTA
1 TTTA
15317847 ATTCTTTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 9 0.38
24 15 0.62
ACGTcount: A:0.22, C:0.08, G:0.14, T:0.57
Consensus pattern (24 bp):
TTTATTTTATATTTGCGTTGACAA
Found at i:15325650 original size:18 final size:17
Alignment explanation
Indices: 15325623--15325669 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
15325613 GAAGGTGAAT
* *
15325623 GAAGAAGAAGAAGGACTA
1 GAAGAGGAAGAAGAAC-A
15325641 GAAGAGGAAGAA-AACA
1 GAAGAGGAAGAAGAACA
15325657 -AAGAGGAAGAAGA
1 GAAGAGGAAGAAGA
15325670 TGTTGCCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
16 2 0.08
17 2 0.08
18 11 0.42
ACGTcount: A:0.60, C:0.04, G:0.34, T:0.02
Consensus pattern (17 bp):
GAAGAGGAAGAAGAACA
Found at i:15326091 original size:17 final size:17
Alignment explanation
Indices: 15326069--15326106 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
15326059 TCTCATTTCA
*
15326069 TTGTCATTGCATTTTAG
1 TTGTCATTGCATTTTAC
15326086 TTGTCATTGCATTTTAC
1 TTGTCATTGCATTTTAC
15326103 TTGT
1 TTGT
15326107 TAATTCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.16, C:0.13, G:0.16, T:0.55
Consensus pattern (17 bp):
TTGTCATTGCATTTTAC
Found at i:15336284 original size:17 final size:17
Alignment explanation
Indices: 15336259--15336292 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15336249 CGTAGCCTCT
15336259 TCTTCGGCTATGATAAC
1 TCTTCGGCTATGATAAC
*
15336276 TCTTTGGCTATGATAAC
1 TCTTCGGCTATGATAAC
15336293 ATATGTTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (17 bp):
TCTTCGGCTATGATAAC
Found at i:15355362 original size:29 final size:29
Alignment explanation
Indices: 15355302--15355505 Score: 90
Period size: 30 Copynumber: 6.8 Consensus size: 29
15355292 AAAATCAAAA
* * * *
15355302 TTTTGGAAAGTTTTAGGGGCTAAAATGCAAT
1 TTTTAGAAAG-TTT-GGGGTTAAAAAGAAAT
15355333 TTTTAGAAAGTTTGGGGTTAAAAAGAAAT
1 TTTTAGAAAGTTTGGGGTTAAAAAGAAAT
* * * **
15355362 TTTTAGAAAGGTCGAGGGTCAAATATCAAA-
1 TTTTAGAAAGTTTG-GGGTTAAA-AAGAAAT
* * *
15355392 TTTTAAAAAGTTTAAGGGTCAAAAATGAAA-
1 TTTTAGAAAGTTT-GGGGTTAAAAA-GAAAT
* * **
15355422 TTTTA-AAAGTTTAAGGGTCAAAAATGATTT
1 TTTTAGAAAGTTT-GGGGTTAAAAA-GAAAT
* * * **
15355452 TTTTAAAAAGCTCGAGGGTTAAATTTGAAAT
1 TTTTAGAAAGTTTG-GGGTTAAA-AAGAAAT
* *
15355483 TTTAAGGAAGTTTGGGGTTAAAA
1 TTTTAGAAAGTTTGGGGTTAAAA
15355506 TATAATTTTT
Statistics
Matches: 134, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
29 48 0.36
30 49 0.37
31 37 0.28
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.34
Consensus pattern (29 bp):
TTTTAGAAAGTTTGGGGTTAAAAAGAAAT
Found at i:15355410 original size:30 final size:29
Alignment explanation
Indices: 15355292--15355446 Score: 116
Period size: 30 Copynumber: 5.2 Consensus size: 29
15355282 AAATGAGGGT
* * * *
15355292 AAAATCAAAATTTTGGAAAGTTTTAGGGGCT
1 AAAATC-AAATTTT-AAAAGTTTAAGGGTCA
* * *
15355323 AAAATGCAATTTTTAGAAAGTTT-GGGGTTA
1 AAAAT-CAAATTTTA-AAAGTTTAAGGGTCA
* * **
15355353 AAAA-GAAATTTTTAGAAAGGTCGAGGGTCA
1 AAAATCAAA-TTTTA-AAAGTTTAAGGGTCA
*
15355383 AATATCAAATTTTAAAAAGTTTAAGGGTCA
1 AAAATCAAATTTT-AAAAGTTTAAGGGTCA
*
15355413 AAAATGAAATTTTAAAAGTTTAAGGGTCA
1 AAAATCAAATTTTAAAAGTTTAAGGGTCA
15355442 AAAAT
1 AAAAT
15355447 GATTTTTTTA
Statistics
Matches: 99, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
28 2 0.02
29 32 0.32
30 42 0.42
31 22 0.22
32 1 0.01
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (29 bp):
AAAATCAAATTTTAAAAGTTTAAGGGTCA
Found at i:15355456 original size:30 final size:29
Alignment explanation
Indices: 15355308--15355459 Score: 119
Period size: 29 Copynumber: 5.1 Consensus size: 29
15355298 AAAATTTTGG
* * *
15355308 AAAGTTTTAGGGGCTAAAATGCAATTTTTA
1 AAAGTTTAAGGGTCAAAAATG-AATTTTTA
* *
15355338 GAAAGTTT-GGGGTTAAAAA-GAAATTTTTA
1 -AAAGTTTAAGGGTCAAAAATG-AATTTTTA
* ** * * *
15355367 GAAAGGTCGAGGGTCAAATATCAAATTTTAA
1 -AAAGTTTAAGGGTCAAAAAT-GAATTTTTA
*
15355398 AAAGTTTAAGGGTCAAAAATGAAATTTTA
1 AAAGTTTAAGGGTCAAAAATGAATTTTTA
*
15355427 AAAGTTTAAGGGTCAAAAATGATTTTTTTA
1 AAAGTTTAAGGGTCAAAAATGA-ATTTTTA
15355457 AAA
1 AAA
15355460 AGCTCGAGGG
Statistics
Matches: 96, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
29 43 0.45
30 39 0.41
31 14 0.15
ACGTcount: A:0.43, C:0.05, G:0.20, T:0.33
Consensus pattern (29 bp):
AAAGTTTAAGGGTCAAAAATGAATTTTTA
Found at i:15362326 original size:20 final size:20
Alignment explanation
Indices: 15362303--15362344 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
15362293 AAAGTACCAT
*
15362303 CAAGGGCACCAAAGTGTATA
1 CAAGGGCACCAAAGTGCATA
*
15362323 CAAGGGCACCGAAGTGCATA
1 CAAGGGCACCAAAGTGCATA
15362343 CA
1 CA
15362345 TACATCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.38, C:0.24, G:0.26, T:0.12
Consensus pattern (20 bp):
CAAGGGCACCAAAGTGCATA
Found at i:15368139 original size:26 final size:25
Alignment explanation
Indices: 15368109--15368157 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
15368099 ATTATTACTC
* *
15368109 AAATTCTCTTTGAGTTTTTCTTTTCA
1 AAATTATCTTTGAG-TCTTCTTTTCA
*
15368135 AAATTATTTTTGAGTCTTCTTTT
1 AAATTATCTTTGAGTCTTCTTTT
15368158 AGAAGAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 8 0.40
26 12 0.60
ACGTcount: A:0.20, C:0.12, G:0.08, T:0.59
Consensus pattern (25 bp):
AAATTATCTTTGAGTCTTCTTTTCA
Found at i:15373864 original size:17 final size:17
Alignment explanation
Indices: 15373807--15373857 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
15373797 TTAGTACCAG
* * *
15373807 AGCTCGTTAGGTGGGTC
1 AGCTCGCTAGGTTGGTT
*
15373824 AGCTAGCTAGGTTGGTT
1 AGCTCGCTAGGTTGGTT
15373841 AGCTCGCTAGGTTGGTT
1 AGCTCGCTAGGTTGGTT
15373858 TGTTCGCCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.14, C:0.16, G:0.37, T:0.33
Consensus pattern (17 bp):
AGCTCGCTAGGTTGGTT
Found at i:15376779 original size:47 final size:47
Alignment explanation
Indices: 15376684--15376792 Score: 137
Period size: 47 Copynumber: 2.3 Consensus size: 47
15376674 GGTAATGTAG
* *
15376684 ATAAACTGTCACATAATCAAATTATGGACAAGCCACCAAAATAACAA
1 ATAAACTGCCACATAATCAAATCATGGACAAGCCACCAAAATAACAA
* * * * * **
15376731 ATATATTGCCACATAATTAAATCATGGACAAGCCACCACATTTGCAA
1 ATAAACTGCCACATAATCAAATCATGGACAAGCCACCAAAATAACAA
15376778 ATAAACTGCCACATA
1 ATAAACTGCCACATA
15376793 TCCCACCTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.46, C:0.23, G:0.09, T:0.22
Consensus pattern (47 bp):
ATAAACTGCCACATAATCAAATCATGGACAAGCCACCAAAATAACAA
Found at i:15384846 original size:20 final size:20
Alignment explanation
Indices: 15384804--15384847 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
15384794 TATCATTTAC
* *
15384804 TTTTAGTTATTTTGTTTATG
1 TTTTAGTTATTTTGCTTAGG
15384824 TTTTAGTTATCTTT-CTTAGG
1 TTTTAGTTAT-TTTGCTTAGG
15384844 TTTT
1 TTTT
15384848 TTTTGCAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.14, C:0.05, G:0.14, T:0.68
Consensus pattern (20 bp):
TTTTAGTTATTTTGCTTAGG
Found at i:15386609 original size:15 final size:16
Alignment explanation
Indices: 15386591--15386620 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15386581 CAAAAGAGGA
15386591 AAAAGAAG-AAGAAGG
1 AAAAGAAGTAAGAAGG
15386606 AAAAGAAGTAAGAAG
1 AAAAGAAGTAAGAAG
15386621 AGAAGAACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (16 bp):
AAAAGAAGTAAGAAGG
Found at i:15387077 original size:17 final size:17
Alignment explanation
Indices: 15387055--15387094 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
15387045 ATAACTGCCC
*
15387055 CTGCATTTTTATTGTCA
1 CTGCATTTTTATTATCA
*
15387072 CTGCATTTTTATTATCC
1 CTGCATTTTTATTATCA
15387089 CTGCAT
1 CTGCAT
15387095 CTACATTGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (17 bp):
CTGCATTTTTATTATCA
Found at i:15399021 original size:4 final size:4
Alignment explanation
Indices: 15399012--15399114 Score: 67
Period size: 4 Copynumber: 26.8 Consensus size: 4
15399002 ATGGTGTAAG
* * *
15399012 AAAT AAAT -AAC AAAT AAAT GAAT AAA- AACA- AAAT AAA- AAAT AAAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT
* * * *
15399057 AAAT -GAT AAA- ATAT AAATT AAAT -ACT AAAGT AAAT GAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAA-T AAAT AAAT AAA-T AAAT AAAT AAAT AAAT
15399104 AAAT AAAT AAA
1 AAAT AAAT AAA
15399115 ATAATCAATA
Statistics
Matches: 76, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
3 14 0.18
4 54 0.71
5 8 0.11
ACGTcount: A:0.72, C:0.03, G:0.04, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:15401502 original size:102 final size:102
Alignment explanation
Indices: 15400925--15401566 Score: 577
Period size: 102 Copynumber: 6.3 Consensus size: 102
15400915 TCGTAAATTC
* * * ** *
15400925 AATCTGACCCACTATAACTTCAAGGG-TATAAGATTTGGTGTGGTAGCTTCA-T-C-TTGCTCTA
1 AATCTGATCCACTACAACTTC-AGGGATATAGGATTTGGTGTTATGGCTTCACTCCATT-C-C-A
* * ** * *
15400986 CTACAACTTTAGAGAGATAAAGATTTGCTACTG-TAGCTTT
62 CTACAACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
* * * ** *
15401026 AATCTAATCC-CTACAACTTTAGGGATATAGGATTTGGAT-TTGTAACTTCACTCTATTCCACTA
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGG-TGTTATGGCTTCACTCCATTCCACTA
* * * *
15401089 CAACTTCAAGGAGATTGAGATATGCTATTGTGAGCTTT
65 CAACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
* * * * ** *
15401127 AATCTGATCCATTGCAACCTCAGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCATTGA
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTATGGCTTCACTCCATTCCACT-A
* * *
15401192 -AACTTCAAGGAGATTGAGATTTGCTACTGTTAGTTAT
65 CAACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
*
15401229 AAT-TCGATCCACTACAACTTCAGGGATATAGGAGTTGGTGTTATGGCTTCACTCCATTCCACTA
1 AATCT-GATCCACTACAACTTCAGGGATATAGGATTTGGTGTTATGGCTTCACTCCATTCCACTA
* *
15401293 CAACTTCAGGGGGATTGAGATATGCTACTATTAGTTTT
65 CAACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
* * * * * * *
15401331 AATTTGATCCATTGCAGCATCAGGGATATAAGATTTGGTGTTGTGGCTTCACTCCATTCCACTAC
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTATGGCTTCACTCCATTCCACTAC
* *
15401396 AACTTTAGGGAGATTGAGATCTGCTACTGTTAGTTTT
66 AACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
* * * ** * **
15401433 AATCTGATCCACTATAACTTCAAGGATATAGGATTTGGTATTATGGCTTCACTATATTTCACTGT
1 AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTATGGCTTCACTCCATTCCACTAC
* * * * *
15401498 AACTTTAGGGATACTGAGATCTGCTACTGCT-GTTTT
66 AACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
* * * **
15401534 ACTC-CATTTCACTGTAACTTCAGGGATATAGGA
1 AATCTGA-TCCACTACAACTTCAGGGATATAGGA
15401567 GTTGTCGTTT
Statistics
Matches: 453, Mismatches: 75, Indels: 26
0.82 0.14 0.05
Matches are distributed among these distances:
99 4 0.01
100 56 0.12
101 60 0.13
102 329 0.73
103 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (102 bp):
AATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTGTTATGGCTTCACTCCATTCCACTAC
AACTTCAGGGAGATTGAGATATGCTACTGTTAGTTTT
Found at i:15401525 original size:204 final size:204
Alignment explanation
Indices: 15400947--15401525 Score: 683
Period size: 204 Copynumber: 2.9 Consensus size: 204
15400937 TATAACTTCA
* * **
15400947 AGGG-TATAAGATTTGGTGTGGTAGCTTCA-T-C-TTGCTCTACTACAACTTTAGAGAGATAAAG
1 AGGGATATAAGATTTGGTGTTGTAGCTTCACTCCATT-C-C-ACTACAACTTTAGGGAGATTGAG
* * *
15401008 ATTTGCTACTG-TAGCTTTAATCTAATCC-CTACAACTTTAGGGATATAGGATTTGG-ATT-TGT
63 ATTTGCTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTATTATG-
* * * *
15401069 AACTTCACTCTATTCCACTACAACTTCAAGGAGATTGAGATATGCTATTGTGAGCTTTAATCTGA
127 -GCTTCACTCTATTCCACTACAACTTCAGGGAGATTGAGATATGCTACTATGAGCTTTAATCTGA
*
15401134 TCCATTGCAACCTC
191 TCCATTGCAACATC
* * * * *
15401148 AGGGATATAGGATTTGGTGTTGTAACTTCACTCCATTCCATTGA-AACTTCAAGGAGATTGAGAT
1 AGGGATATAAGATTTGGTGTTGTAGCTTCACTCCATTCCACT-ACAACTTTAGGGAGATTGAGAT
* * *
15401212 TTGCTACTGTTAGTTATAAT-TCGATCCACTACAACTTCAGGGATATAGGAGTTGGTGTTATGGC
65 TTGCTACTGTTAGTTTTAATCT-GATCCACTACAACTTCAGGGATATAGGATTTGGTATTATGGC
* * * * *
15401276 TTCACTCCATTCCACTACAACTTCAGGGGGATTGAGATATGCTACTATTAGTTTTAATTTGATCC
129 TTCACTCTATTCCACTACAACTTCAGGGAGATTGAGATATGCTACTATGAGCTTTAATCTGATCC
*
15401341 ATTGCAGCATC
194 ATTGCAACATC
* *
15401352 AGGGATATAAGATTTGGTGTTGTGGCTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATC
1 AGGGATATAAGATTTGGTGTTGTAGCTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATT
* *
15401417 TGCTACTGTTAGTTTTAATCTGATCCACTATAACTTCAAGGATATAGGATTTGGTATTATGGCTT
66 TGCTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTATTATGGCTT
* * ** * * * *
15401482 CACTATATTTCACTGTAACTTTAGGGATACTGAGATCTGCTACT
131 CACTCTATTCCACTACAACTTCAGGGAGATTGAGATATGCTACT
15401526 GCTGTTTTAC
Statistics
Matches: 318, Mismatches: 48, Indels: 21
0.82 0.12 0.05
Matches are distributed among these distances:
201 4 0.01
202 49 0.15
203 16 0.05
204 242 0.76
205 5 0.02
206 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (204 bp):
AGGGATATAAGATTTGGTGTTGTAGCTTCACTCCATTCCACTACAACTTTAGGGAGATTGAGATT
TGCTACTGTTAGTTTTAATCTGATCCACTACAACTTCAGGGATATAGGATTTGGTATTATGGCTT
CACTCTATTCCACTACAACTTCAGGGAGATTGAGATATGCTACTATGAGCTTTAATCTGATCCAT
TGCAACATC
Found at i:15402189 original size:19 final size:19
Alignment explanation
Indices: 15402127--15402189 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 19
15402117 ACCATTAGTC
* *
15402127 AAAAATGTCAAACATCGAT
1 AAAAATGGCAAACATCAAT
* * *
15402146 AAAAAATGGAAAACATTAGT
1 -AAAAATGGCAAACATCAAT
*
15402166 CAAAATGGCAAACATCAAT
1 AAAAATGGCAAACATCAAT
15402185 AAAAA
1 AAAAA
15402190 ATTGCTAAAC
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.59, C:0.13, G:0.11, T:0.17
Consensus pattern (19 bp):
AAAAATGGCAAACATCAAT
Found at i:15402200 original size:40 final size:40
Alignment explanation
Indices: 15402119--15402200 Score: 112
Period size: 39 Copynumber: 2.0 Consensus size: 40
15402109 AAATAGCAAC
* * *
15402119 CATTAGTCAAAAATGTCAAACATCGATAAAAAATGGAAAA
1 CATTAGTCAAAAATGGCAAACATCAATAAAAAATGCAAAA
*
15402159 CATTAGTC-AAAATGGCAAACATCAATAAAAAATTGCTAAA
1 CATTAGTCAAAAATGGCAAACATCAATAAAAAA-TGCAAAA
15402199 CA
1 CA
15402201 CAAGGTAAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 22 0.59
40 15 0.41
ACGTcount: A:0.54, C:0.15, G:0.11, T:0.21
Consensus pattern (40 bp):
CATTAGTCAAAAATGGCAAACATCAATAAAAAATGCAAAA
Found at i:15402523 original size:14 final size:14
Alignment explanation
Indices: 15402487--15402528 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
15402477 GACCTCTCCT
15402487 TTTCTTTTCTCTT--
1 TTTCTTTTCT-TTCC
15402500 TTTCTCTTTCTTTCC
1 TTTCT-TTTCTTTCC
15402515 TTTCTTTTCTTTCC
1 TTTCTTTTCTTTCC
15402529 CCCTTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 7 0.27
14 14 0.54
15 5 0.19
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTCTTTTCTTTCC
Found at i:15405581 original size:50 final size:50
Alignment explanation
Indices: 15405504--15405641 Score: 154
Period size: 50 Copynumber: 2.7 Consensus size: 50
15405494 TGCATGACTT
* *
15405504 GATTTAATGATGCAAATTTTAACTAACATGGGAGTTACATAATGCTTGAT-AG
1 GATTT-ATGATGCAAA-TTTAACTAACATGAGAGTTACATAATGCATG-TCAG
* * *
15405556 GATTTATGATGCATATTTAACTAACATGTA-AGTTACTTAATGCATGTCAT
1 GATTTATGATGCAAATTTAACTAACATG-AGAGTTACATAATGCATGTCAG
* *
15405606 TATTTATGATGCAAACTTAACTAATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACTAA-CATGAGAGTTA
15405642 ATGAATGTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
49 1 0.01
50 50 0.68
51 18 0.24
52 5 0.07
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGAGAGTTACATAATGCATGTCAG
Found at i:15405807 original size:19 final size:17
Alignment explanation
Indices: 15405783--15405828 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
15405773 ATGAATGACT
15405783 TTATTAAATGCAATACAC
1 TTATTAAATGCAA-ACAC
15405801 TTAATTAAAGATGCAAACAC
1 TT-ATT-AA-ATGCAAACAC
15405821 TTATTAAA
1 TTATTAAA
15405829 CTAAAATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
17 1 0.04
18 4 0.16
19 6 0.24
20 8 0.32
21 6 0.24
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.33
Consensus pattern (17 bp):
TTATTAAATGCAAACAC
Found at i:15405822 original size:20 final size:20
Alignment explanation
Indices: 15405790--15405828 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 20
15405780 ACTTTATTAA
15405790 ATGCAATACACTTAATTAAAG
1 ATGCAATACACTT-ATTAAAG
15405811 ATGCAA-ACACTTATTAAA
1 ATGCAATACACTTATTAAA
15405829 CTAAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 6 0.33
21 6 0.33
ACGTcount: A:0.49, C:0.15, G:0.08, T:0.28
Consensus pattern (20 bp):
ATGCAATACACTTATTAAAG
Found at i:15405855 original size:17 final size:17
Alignment explanation
Indices: 15405824--15405856 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15405814 CAAACACTTA
15405824 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
15405841 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
15405857 TGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:15406141 original size:17 final size:17
Alignment explanation
Indices: 15406121--15406153 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15406111 AAAACACTTA
15406121 TTAAACTAAAA-TAAAAC
1 TTAAA-TAAAATTAAAAC
15406138 TTAAATAAAATTAAAA
1 TTAAATAAAATTAAAA
15406154 AGTTCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAATAAAATTAAAAC
Found at i:15406212 original size:22 final size:22
Alignment explanation
Indices: 15406184--15406228 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
15406174 CAATAATCAA
15406184 TCAGGCTGGTGAGATGTTTCAT
1 TCAGGCTGGTGAGATGTTTCAT
15406206 TCAGGCTGGTGAGATGTTTCAT
1 TCAGGCTGGTGAGATGTTTCAT
15406228 T
1 T
15406229 TTGCACTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.13, G:0.31, T:0.38
Consensus pattern (22 bp):
TCAGGCTGGTGAGATGTTTCAT
Found at i:15407178 original size:12 final size:12
Alignment explanation
Indices: 15407157--15407191 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
15407147 TTTGAAGAGC
15407157 ATAAAGTAAAAT
1 ATAAAGTAAAAT
*
15407169 ATAAAATAAAAT
1 ATAAAGTAAAAT
*
15407181 AGAAAGTAAAA
1 ATAAAGTAAAA
15407192 GCAAAAGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (12 bp):
ATAAAGTAAAAT
Found at i:15413902 original size:18 final size:18
Alignment explanation
Indices: 15413876--15413911 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15413866 GTATAGATAT
*
15413876 GGTTGGATAATTCCATTG
1 GGTTAGATAATTCCATTG
15413894 GGTTAGATAATTCCATTG
1 GGTTAGATAATTCCATTG
15413912 ATGAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (18 bp):
GGTTAGATAATTCCATTG
Found at i:15415197 original size:182 final size:182
Alignment explanation
Indices: 15414955--15415736 Score: 1224
Period size: 182 Copynumber: 4.3 Consensus size: 182
15414945 GGATTATTCT
* ** * * * * ** **
15414955 TTGGTTAATCTAACTAGAGCTGAGCACACTTCT-ACAGTTTAACCACTAGGCATTGGGTGCCAAG
1 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
* * * * *
15415019 ATCGTCGGTCTATCCGACTAGCGCTAGGCACAATCCGTTAGTTAATCTAACTAGAGCTGGGCTCA
66 ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTAGTTAATCCAACTAGAGCTGGGCTCA
15415084 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
131 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
15415136 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
1 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
* * * *
15415201 ATCTTCGGTTTATCCAACAAGCGCTGGGCGCAATCTGTTAGTTAATCTAACTAGAGCTGGGCTCA
66 ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTAGTTAATCCAACTAGAGCTGGGCTCA
*
15415266 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGATGAACTTTG
131 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
*
15415318 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCACGGTTTAACTGCTAGGCACCGGGTGCCAAG
1 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
*
15415383 ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTGGTTAATCCAACTAGAGCTGGGCTCA
66 ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTAGTTAATCCAACTAGAGCTGGGCTCA
** * * * * *
15415448 CTTATCGTGATTTATCTACCAGGCACTGGGTGCCATGAATTGACGAACTTTG
131 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
15415500 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
1 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
* * *
15415565 ATCTTCGGTTTATCCGACAAGTGCTGGGCGCAATCCGTTGGTTAATCCAACTAGAGCTGGGCTCA
66 ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTAGTTAATCCAACTAGAGCTGGGCTCA
15415630 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
131 CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
* * * *
15415682 TTGGTTAATCCAACTAGAGTTGGGCTCACTTATCGCGGTCTAACCGCTAGGCACC
1 TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACC
15415737 CAGTGCCATG
Statistics
Matches: 553, Mismatches: 47, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
181 28 0.05
182 525 0.95
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (182 bp):
TTGGTTAATCCAACTAGATTTGAGCTCACTTATCGCGGTTTAACTGCTAGGCACCGGGTGCCAAG
ATCTTCGGTCTATCCGACAAGCGCTGGGCGCAATCCGTTAGTTAATCCAACTAGAGCTGGGCTCA
CTTATCACGGTTTATCCACCAAGCACTGAGTGTCATGAATTGACGAACTTTG
Found at i:15415747 original size:80 final size:80
Alignment explanation
Indices: 15415601--15415754 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
15415591 GGCGCAATCC
* * ** *
15415601 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCACGGTTTATCCACCAAGCACTGAGTGTCAT
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCACGGTCTAACCACCAAGCACCCAGTGCCAT
15415666 GAATTGACGAACTTT
66 GAATTGACGAACTTT
* * * * *
15415681 GTTGGTTAATCCAACTAGAGTTGGGCTCACTTATCGCGGTCTAACCGCTAGGCACCCAGTGCCAT
1 GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCACGGTCTAACCACCAAGCACCCAGTGCCAT
15415746 GAATTGACG
66 GAATTGACG
15415755 GAAATTATGA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (80 bp):
GTTGGTTAATCCAACTAGAGCTGGGCTCACTTATCACGGTCTAACCACCAAGCACCCAGTGCCAT
GAATTGACGAACTTT
Found at i:15420348 original size:20 final size:20
Alignment explanation
Indices: 15420316--15420356 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15420306 CTGGATTGGT
15420316 ATGGTTTATATTAAGATTAA
1 ATGGTTTATATTAAGATTAA
*
15420336 ATGGATTTA-ATTAAGGTTAA
1 ATGG-TTTATATTAAGATTAA
15420356 A
1 A
15420357 AAAATGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.41
Consensus pattern (20 bp):
ATGGTTTATATTAAGATTAA
Found at i:15420837 original size:51 final size:51
Alignment explanation
Indices: 15420763--15420981 Score: 314
Period size: 51 Copynumber: 4.3 Consensus size: 51
15420753 TAAACGAAAG
*
15420763 GGTCCGATGACTAAGTGTTATCATGAGTAAATGAATCCATGATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGATGGATTAAA
*
15420814 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATAATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGATGGATTAAA
*
15420865 GGTCCGACGACTAAGTGTCATCATGAGTAAATGAATCCATGATGGATTAAA
1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGATGGATTAAA
* * * * * * *
15420916 GGTCCGATGACTCAGTGTTATCGTGAGCATATGAATTCTTAT-ATGGAATAAGA
1 GGTCCGATGACTAAGTGTCATCATGAGTAAATGAA-TC-CATGATGGATTAA-A
15420969 GGTCCGATGACTA
1 GGTCCGATGACTA
15420982 TATATCATCG
Statistics
Matches: 152, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
51 127 0.84
52 10 0.07
53 15 0.10
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (51 bp):
GGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCATGATGGATTAAA
Found at i:15424412 original size:17 final size:17
Alignment explanation
Indices: 15424367--15424414 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
15424357 TGATATATGG
**
15424367 AAATGCAATGACAATGT
1 AAATGCAATGACAATAA
* * *
15424384 AGATGTAGTGACAATAA
1 AAATGCAATGACAATAA
15424401 AAATGCAATGACAA
1 AAATGCAATGACAA
15424415 AGGGAATGCG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.19, T:0.21
Consensus pattern (17 bp):
AAATGCAATGACAATAA
Found at i:15437843 original size:30 final size:30
Alignment explanation
Indices: 15437807--15437873 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
15437797 TAAAATCATT
15437807 TTTGCTTAATTCAAATGGGCAATATTCTGG
1 TTTGCTTAATTCAAATGGGCAATATTCTGG
*
15437837 TTTGCTTAATTCAAATGGGCAATATTTTGG
1 TTTGCTTAATTCAAATGGGCAATATTCTGG
15437867 TTTGCTT
1 TTTGCTT
15437874 CATGAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.24, C:0.12, G:0.19, T:0.45
Consensus pattern (30 bp):
TTTGCTTAATTCAAATGGGCAATATTCTGG
Found at i:15449695 original size:11 final size:11
Alignment explanation
Indices: 15449679--15449711 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
15449669 GTTTGATACA
15449679 TATTTAATAGT
1 TATTTAATAGT
*
15449690 TATTTAATAGG
1 TATTTAATAGT
15449701 T-TTTAATAGT
1 TATTTAATAGT
15449711 T
1 T
15449712 TAAGTTTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (11 bp):
TATTTAATAGT
Found at i:15450909 original size:23 final size:24
Alignment explanation
Indices: 15450883--15450927 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
15450873 AGAAGTGCAA
15450883 AGTTT-GAAA-TATTAAAAAAAAAG
1 AGTTTCGAAAGTA-TAAAAAAAAAG
15450906 AGTTTCGAAAGTATAAAAAAAA
1 AGTTTCGAAAGTATAAAAAAAA
15450928 GGCTAGTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 13 0.65
25 2 0.10
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.24
Consensus pattern (24 bp):
AGTTTCGAAAGTATAAAAAAAAAG
Found at i:15452988 original size:21 final size:20
Alignment explanation
Indices: 15452941--15453010 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 20
15452931 AGTGAGAATG
*
15452941 AAAAAGAAAAGAAAATTGGA
1 AAAAAGAAAAGAAAAGTGGA
*
15452961 AAAAAGAAAGGAAAAGTGAGA
1 AAAAAGAAAAGAAAAGTG-GA
* *
15452982 GAAAAGAGCAAAG-AAAGTGAA
1 -AAAA-AGAAAAGAAAAGTGGA
15453003 AAGAAAGA
1 AA-AAAGA
15453011 GAGAAAAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
20 20 0.50
21 5 0.12
22 10 0.25
23 5 0.12
ACGTcount: A:0.67, C:0.01, G:0.26, T:0.06
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAGTGGA
Found at i:15453013 original size:31 final size:28
Alignment explanation
Indices: 15452963--15453019 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
15452953 AAATTGGAAA
*
15452963 AAAGAAAGGAAAAGTGAGAGAAAAGAGC
1 AAAGAAAGGAAAAGAGAGAGAAAAGAGC
15452991 AAAGAAAGTGAAAAGAAAGAGAGAAAAGA
1 AAAGAAAG-GAAAAG--AGAGAGAAAAGA
15453020 AAAAGATGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 6 0.24
31 11 0.44
ACGTcount: A:0.65, C:0.02, G:0.30, T:0.04
Consensus pattern (28 bp):
AAAGAAAGGAAAAGAGAGAGAAAAGAGC
Found at i:15467150 original size:50 final size:52
Alignment explanation
Indices: 15467064--15467194 Score: 146
Period size: 50 Copynumber: 2.6 Consensus size: 52
15467054 TGCATGACTT
*
15467064 GATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATGCATGATAG
1 GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGATAG
* * * *
15467116 GATTT-ATGATGCATA-TTTAACTAACATGTAAGTTACTTAATGCATG-TCAT
1 GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGAT-AG
* *
15467166 TATTT-ATGATGTAAAC-TTAACTAATCATG
1 GATTTAATGATGCAAACTTTAACTAA-CATG
15467195 AGAGTTAATG
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
49 1 0.01
50 49 0.72
51 13 0.19
52 5 0.07
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (52 bp):
GATTTAATGATGCAAACTTTAACTAACATGGAAGTTACATAATGCATGATAG
Found at i:15467427 original size:17 final size:17
Alignment explanation
Indices: 15467396--15467428 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15467386 CAAACAGTTA
15467396 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
15467413 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
15467429 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:15468784 original size:21 final size:22
Alignment explanation
Indices: 15468759--15468799 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
15468749 TCACGTACAG
15468759 AAATAGAA-AAGAAGA-AAAAGA
1 AAATA-AAGAAGAAGAGAAAAGA
15468780 AAATAAAGAAGAAGAGAAAA
1 AAATAAAGAAGAAGAGAAAA
15468800 ATAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 12 0.67
22 4 0.22
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (22 bp):
AAATAAAGAAGAAGAGAAAAGA
Found at i:15479314 original size:83 final size:83
Alignment explanation
Indices: 15479220--15479384 Score: 287
Period size: 83 Copynumber: 2.0 Consensus size: 83
15479210 GACAAGGAAA
* *
15479220 GAATTTTTTTTGTATTCC-AGTTCCATCCATGTAACTTAGTTTTTTAAGTTTTAAACTCACCAAA
1 GAATTATTTTTGTATTCCGA-TTCCATCCATGTAACTTAGTTTTGTAAGTTTTAAACTCACCAAA
*
15479284 AAAAAATCTAACAATTTCT
65 AAAAAACCTAACAATTTCT
15479303 GAATTATTTTTGTATTCCGATTCCATCCATGTAACTTAGTTTTGTAAGTTTTAAACTCACCAAAA
1 GAATTATTTTTGTATTCCGATTCCATCCATGTAACTTAGTTTTGTAAGTTTTAAACTCACCAAAA
15479368 AAAAACCTAACAATTTC
66 AAAAACCTAACAATTTC
15479385 CTCCATGTCC
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
83 77 0.99
84 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.40
Consensus pattern (83 bp):
GAATTATTTTTGTATTCCGATTCCATCCATGTAACTTAGTTTTGTAAGTTTTAAACTCACCAAAA
AAAAACCTAACAATTTCT
Found at i:15481540 original size:27 final size:28
Alignment explanation
Indices: 15481498--15481553 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
15481488 AATACCCATC
* *
15481498 TTCATAGATATCTACATCATAAT-AATCA
1 TTCATAGAGATCTACA-CAAAATAAATCA
15481526 TTCAT-GAGATCTACACAAAATAAATCA
1 TTCATAGAGATCTACACAAAATAAATCA
15481553 T
1 T
15481554 AGGCATCCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.20
27 15 0.60
28 5 0.20
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (28 bp):
TTCATAGAGATCTACACAAAATAAATCA
Found at i:15488404 original size:33 final size:34
Alignment explanation
Indices: 15488356--15488420 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
15488346 AAGATTGTGA
* * *
15488356 TTTAATTATGTCATGCATTAT-TAATCTACATCT
1 TTTAAATATGACATGCATAATGTAATCTACATCT
*
15488389 TTTAAATATGACATGCATAATGTGATCTACAT
1 TTTAAATATGACATGCATAATGTAATCTACAT
15488421 TTAATAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 18 0.67
34 9 0.33
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (34 bp):
TTTAAATATGACATGCATAATGTAATCTACATCT
Found at i:15488533 original size:50 final size:50
Alignment explanation
Indices: 15488455--15488610 Score: 172
Period size: 50 Copynumber: 3.1 Consensus size: 50
15488445 TGACATCGAT
* *
15488455 TAACTCTCATGATTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAG
1 TAACTCACATG-TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
* * * *
15488506 TAACTTACATGTTAGTTAAATATGCATCATAAATCAT-ATCATGCATTATG
1 TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGA-CATGCATTAAG
* * *
15488556 TAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAG
1 TAACTCACATGTTAGTTAAA-TTTGCATCA-TAAAT-AATGACATGCATTAAG
15488608 TAA
1 TAA
15488611 TCCATTAATT
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
49 1 0.01
50 51 0.59
51 17 0.20
52 17 0.20
53 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (50 bp):
TAACTCACATGTTAGTTAAATTTGCATCATAAATAATGACATGCATTAAG
Found at i:15489927 original size:24 final size:23
Alignment explanation
Indices: 15489875--15489928 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
15489865 AAGTTTAAAA
*
15489875 AAAAGAAG-AAAAAAATTCAAATT
1 AAAA-AAGCAAAAAAATTCAAATG
15489898 AAAAAAGCAAAAAAATTCGAAA-G
1 AAAAAAGCAAAAAAATTC-AAATG
15489921 AAGAAAAG
1 AA-AAAAG
15489929 AAATTCTAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 3 0.11
23 16 0.59
24 8 0.30
ACGTcount: A:0.70, C:0.06, G:0.13, T:0.11
Consensus pattern (23 bp):
AAAAAAGCAAAAAAATTCAAATG
Found at i:15490857 original size:19 final size:21
Alignment explanation
Indices: 15490806--15490857 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
15490796 ATTTTTGATG
* *
15490806 AAAGAAAATGAAAGAAAAATA
1 AAAGAGAATGAGAGAAAAATA
* *
15490827 AAAGAGATTGAGAGAAGAA-A
1 AAAGAGAATGAGAGAAAAATA
15490847 AAAG-GAATGAG
1 AAAGAGAATGAG
15490858 GGGAAAAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 6 0.23
20 5 0.19
21 15 0.58
ACGTcount: A:0.65, C:0.00, G:0.25, T:0.10
Consensus pattern (21 bp):
AAAGAGAATGAGAGAAAAATA
Found at i:15490936 original size:18 final size:17
Alignment explanation
Indices: 15490904--15490937 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
15490894 AAAAGTTGTG
15490904 AGAAAAGAGAATGAAAA
1 AGAAAAGAGAATGAAAA
*
15490921 AGAAAGAGAGACTGAAA
1 AGAAA-AGAGAATGAAA
15490938 GAAATTGTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.65, C:0.03, G:0.26, T:0.06
Consensus pattern (17 bp):
AGAAAAGAGAATGAAAA
Found at i:15492255 original size:17 final size:17
Alignment explanation
Indices: 15492235--15492267 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15492225 TTTAAGGACT
15492235 TTTTAATTTTA-TTTAAG
1 TTTT-ATTTTAGTTTAAG
15492252 TTTTATTTTAGTTTAA
1 TTTTATTTTAGTTTAA
15492268 TATGTGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTTATTTTAGTTTAAG
Found at i:15492541 original size:50 final size:50
Alignment explanation
Indices: 15492474--15492617 Score: 148
Period size: 50 Copynumber: 2.8 Consensus size: 50
15492464 ACTCTCATTA
* *
15492474 TTAGTTAAGTTTGCATCATAAATAATGACATGCATTAAGTAACTTACATG
1 TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAGTAACTCACATG
* * * * *
15492524 TTAGTTAAATATGCATCATAAAT-CTTATCATGCATTATGTAACTCCCATG
1 TTAGTTAAATTTGCATCATAAATAATGA-CATGCATTAAGTAACTCACATG
* * *
15492574 TTAATTAAAGTTTGCATCATTAAATCAA-GTCATGCATTTAGTAA
1 TTAGTTAAA-TTTGCATCA-TAAAT-AATGACATGCATTAAGTAA
15492618 TCCATTAGTT
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
49 2 0.03
50 48 0.64
51 8 0.11
52 17 0.23
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.38
Consensus pattern (50 bp):
TTAGTTAAATTTGCATCATAAATAATGACATGCATTAAGTAACTCACATG
Found at i:15501461 original size:15 final size:14
Alignment explanation
Indices: 15501421--15501487 Score: 55
Period size: 15 Copynumber: 4.6 Consensus size: 14
15501411 CTGTTTACCT
* *
15501421 ATTTAGTTTCCTGC
1 ATTTACTTTCTTGC
*
15501435 AATTTATTTTCTTGC
1 -ATTTACTTTCTTGC
*
15501450 ACTTTACTTTCTTAC
1 A-TTTACTTTCTTGC
*
15501465 ATTTAAATTT-TTGC
1 ATTT-ACTTTCTTGC
15501479 ATTTACTTT
1 ATTTACTTT
15501488 TCTCACACCA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
13 4 0.09
14 11 0.26
15 28 0.65
ACGTcount: A:0.21, C:0.16, G:0.06, T:0.57
Consensus pattern (14 bp):
ATTTACTTTCTTGC
Found at i:15501693 original size:17 final size:17
Alignment explanation
Indices: 15501640--15501694 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
15501630 ATTTTGTTTC
15501640 TTTTTACTCTTTATATA
1 TTTTTACTCTTTATATA
* * **
15501657 TTTCTAGTAATTACTATA
1 TTTTTACTCTTTA-TATA
*
15501675 TTTTTATTCTTTATATA
1 TTTTTACTCTTTATATA
15501692 TTT
1 TTT
15501695 AATACATAGT
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTTACTCTTTATATA
Found at i:15501709 original size:2 final size:2
Alignment explanation
Indices: 15501686--15501747 Score: 90
Period size: 2 Copynumber: 31.0 Consensus size: 2
15501676 TTTTATTCTT
* *
15501686 TA TA TA TT TA -A TA CA TA GTA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
15501728 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
15501748 CTTTGCCATA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 1 0.02
2 51 0.94
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:15512987 original size:14 final size:15
Alignment explanation
Indices: 15512963--15512993 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
15512953 TAGTGTTTTG
15512963 AAAGCATAAAAATAA
1 AAAGCATAAAAATAA
15512978 AAAG-ATAAAAATAA
1 AAAGCATAAAAATAA
15512992 AA
1 AA
15512994 TAAAGTAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAGCATAAAAATAA
Found at i:15522287 original size:16 final size:15
Alignment explanation
Indices: 15522266--15522307 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
15522256 TAAATTAAGC
15522266 TTAAAAATAAATTTAA
1 TTAAAAA-AAATTTAA
*
15522282 TTAAAAACAATTTAA
1 TTAAAAAAAATTTAA
15522297 TTAGAAAAAAA
1 TTA-AAAAAAA
15522308 ATAAGGGATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
TTAAAAAAAATTTAA
Found at i:15522293 original size:15 final size:16
Alignment explanation
Indices: 15522275--15522304 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15522265 CTTAAAAATA
15522275 AATTTAATTA-AAAAC
1 AATTTAATTAGAAAAC
15522290 AATTTAATTAGAAAA
1 AATTTAATTAGAAAA
15522305 AAAATAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (16 bp):
AATTTAATTAGAAAAC
Found at i:15524980 original size:19 final size:19
Alignment explanation
Indices: 15524956--15525051 Score: 158
Period size: 19 Copynumber: 5.1 Consensus size: 19
15524946 AACACATTTG
*
15524956 ATATTCACATCTATTTCAC
1 ATATTCACATCAATTTCAC
*
15524975 ATATTCACATCAATGTCA-
1 ATATTCACATCAATTTCAC
15524993 ATATTCACATCAATTTCAC
1 ATATTCACATCAATTTCAC
15525012 ATATTCACATCAATTTCAC
1 ATATTCACATCAATTTCAC
*
15525031 ATATTCACATCAATGTCAC
1 ATATTCACATCAATTTCAC
15525050 AT
1 AT
15525052 GTTTACAGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
18 17 0.24
19 55 0.76
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATTCACATCAATTTCAC
Found at i:15525009 original size:37 final size:38
Alignment explanation
Indices: 15524956--15525051 Score: 158
Period size: 37 Copynumber: 2.6 Consensus size: 38
15524946 AACACATTTG
*
15524956 ATATTCACATCTATTTCACATATTCACATCAATGTCA-
1 ATATTCACATCAATTTCACATATTCACATCAATGTCAC
*
15524993 ATATTCACATCAATTTCACATATTCACATCAATTTCAC
1 ATATTCACATCAATTTCACATATTCACATCAATGTCAC
*
15525031 ATATTCACATCAATGTCACAT
1 ATATTCACATCAATTTCACAT
15525052 GTTTACAGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 35 0.64
38 20 0.36
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (38 bp):
ATATTCACATCAATTTCACATATTCACATCAATGTCAC
Found at i:15525049 original size:11 final size:10
Alignment explanation
Indices: 15524958--15525051 Score: 71
Period size: 11 Copynumber: 9.8 Consensus size: 10
15524948 CACATTTGAT
15524958 ATTCACATCTA
1 ATTCACATC-A
*
15524969 TTTCACAT--
1 ATTCACATCA
15524977 ATTCACATCA
1 ATTCACATCA
15524987 ATGTCA-AT--
1 AT-TCACATCA
15524995 ATTCACATCA
1 ATTCACATCA
15525005 ATTTCACAT--
1 A-TTCACATCA
15525014 ATTCACATCA
1 ATTCACATCA
15525024 ATTTCACAT--
1 A-TTCACATCA
15525033 ATTCACATCA
1 ATTCACATCA
15525043 ATGTCACAT
1 AT-TCACAT
15525052 GTTTACAGAT
Statistics
Matches: 68, Mismatches: 2, Indels: 26
0.71 0.02 0.27
Matches are distributed among these distances:
7 3 0.04
8 25 0.37
9 2 0.03
10 8 0.12
11 30 0.44
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (10 bp):
ATTCACATCA
Found at i:15525546 original size:45 final size:45
Alignment explanation
Indices: 15525440--15525552 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
15525430 GTAATGATGG
* * * * *
15525440 CTCACTTATTTCAAATTGCAACCCTAGGTTGCCCGACAATGATAA
1 CTCACTTATGTCGAATTGCTACCTTGGGTTGCCCGACAATGATAA
* *
15525485 CTCACTTATGTCGAATTGCTACCTTGGGTTGCCTGACAATGATAG
1 CTCACTTATGTCGAATTGCTACCTTGGGTTGCCCGACAATGATAA
* * *
15525530 CTTACTTATGTTGAATTGTTACC
1 CTCACTTATGTCGAATTGCTACC
15525553 CCGGGTTGTT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (45 bp):
CTCACTTATGTCGAATTGCTACCTTGGGTTGCCCGACAATGATAA
Found at i:15528304 original size:12 final size:12
Alignment explanation
Indices: 15528287--15528328 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
15528277 TATCTTCTTG
15528287 TTTTTCATTTTC
1 TTTTTCATTTTC
*
15528299 TTTTTC-TTCTTG
1 TTTTTCATT-TTC
15528311 TTTTTCATTTTC
1 TTTTTCATTTTC
15528323 TTTTTC
1 TTTTTC
15528329 CTCTTGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTTCATTTTC
Found at i:15528311 original size:24 final size:24
Alignment explanation
Indices: 15528279--15528334 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
15528269 TGTATGGGTA
15528279 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
15528303 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
*
15528327 TCCTCTTG
1 TCTTCTTG
15528335 AGAACTCTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.04, C:0.20, G:0.05, T:0.71
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCTTTT
Found at i:15533218 original size:19 final size:18
Alignment explanation
Indices: 15533194--15533233 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
15533184 TGCATTTTAC
15533194 TGTCATTGCATTTCTATTT
1 TGTCATTGCATTTCT-TTT
15533213 TGTCATTGCATTTCTTTT
1 TGTCATTGCATTTCTTTT
15533231 TGT
1 TGT
15533234 TAATTTAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.60
Consensus pattern (18 bp):
TGTCATTGCATTTCTTTT
Found at i:15542198 original size:16 final size:18
Alignment explanation
Indices: 15542179--15542213 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
15542169 TAAAAATGTT
15542179 AAATTT-AAAA-AATAAA
1 AAATTTCAAAATAATAAA
15542195 AAATTTCAAAATAATAAA
1 AAATTTCAAAATAATAAA
15542213 A
1 A
15542214 TGATGACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 4 0.24
18 7 0.41
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATTTCAAAATAATAAA
Found at i:15542558 original size:19 final size:19
Alignment explanation
Indices: 15542477--15542566 Score: 110
Period size: 19 Copynumber: 4.7 Consensus size: 19
15542467 CAAAAATTAA
*
15542477 AAAAAATCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
15542496 AAATAATTCAAAATAATTTT
1 AAA-AATTCAAAATAATTTT
* *
15542516 TAAATTTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
15542535 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
*
15542554 AAAAATTTAAAAT
1 AAAAATTCAAAAT
15542567 TTTATATTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
18 4 0.06
19 42 0.67
20 17 0.27
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:15542566 original size:38 final size:39
Alignment explanation
Indices: 15542483--15542566 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
15542473 TTAAAAAAAA
*
15542483 TCAAAATAATTTTAAATAATTCAAAATAATTTTTAAATT
1 TCAAAATAATTTTAAATAATTCAAAATAATTTTAAAATT
*
15542522 TCAAAATAATTTTTAA-AATTCAAAAT-ATTTATAAAAATT
1 TCAAAATAATTTTAAATAATTCAAAATAATTT-T-AAAATT
15542561 T-AAAAT
1 TCAAAAT
15542567 TTTATATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
37 4 0.10
38 16 0.39
39 21 0.51
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.42
Consensus pattern (39 bp):
TCAAAATAATTTTAAATAATTCAAAATAATTTTAAAATT
Found at i:15557835 original size:48 final size:48
Alignment explanation
Indices: 15557781--15557897 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 48
15557771 AACAAAGCAC
* * *
15557781 TTAACAAACAAAATAGTTAACAATGTAGATTACTAAACAAAGATGCAT
1 TTAACAAACAAAACACTTAACAATGCAGATTACTAAACAAAGATGCAT
** * *
15557829 TTAACAAACAAAACACTTAATGATGCATATTATTAAACAAAGATGCAT
1 TTAACAAACAAAACACTTAACAATGCAGATTACTAAACAAAGATGCAT
*
15557877 TTAACAAGAAAAAAACACTTA
1 TTAAC-A-AACAAAACACTTA
15557898 CTGAAGCATA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
48 46 0.78
49 1 0.02
50 12 0.20
ACGTcount: A:0.53, C:0.14, G:0.09, T:0.25
Consensus pattern (48 bp):
TTAACAAACAAAACACTTAACAATGCAGATTACTAAACAAAGATGCAT
Found at i:15557914 original size:48 final size:47
Alignment explanation
Indices: 15557814--15557916 Score: 136
Period size: 48 Copynumber: 2.1 Consensus size: 47
15557804 TGTAGATTAC
* * *
15557814 TAAACAAAGATGCATTTAACAAACAAAACACTTAATGATGCATATTAT
1 TAAACAAAGATGCATTTAACAAAAAAAACACTTAATGAAGCATA-TAA
*
15557862 TAAACAAAGATGCATTTAACAAGAAAAAAACACTTACTGAAGCATA-AA
1 TAAACAAAGATGCATTTAAC-A-AAAAAAACACTTAATGAAGCATATAA
15557910 TAAACAA
1 TAAACAA
15557917 CTTTATTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
48 28 0.57
49 1 0.02
50 20 0.41
ACGTcount: A:0.54, C:0.15, G:0.09, T:0.22
Consensus pattern (47 bp):
TAAACAAAGATGCATTTAACAAAAAAAACACTTAATGAAGCATATAA
Found at i:15558594 original size:216 final size:217
Alignment explanation
Indices: 15558192--15565398 Score: 7413
Period size: 216 Copynumber: 33.5 Consensus size: 217
15558182 TGCTCACATC
* * *
15558192 AAATAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAAAAACTTATTTATGTGACAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * ** * * *
15558257 GATTCTCTCTTGGTTCTTGGACGTACTTCCGAACTCATAAAACTTTTATGAGTTCTTTTATAACT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
* * * * *
15558322 TCAGTTCCTTAAAGTATTCAAGACGATCCATTTCATCGAGCAATT-TTCCAAACATTCCGTGCTC
131 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCTC
* * *
15558386 GAGAAATTGCATCTTTTGGTCC
196 GAGAAATCGCATCATTTGGTCT
* * * * * * * * *
15558408 AAAAAGTTTGTTATTTTGAAAAAAAGTTTTGGTCTTTAAATTAAAAACTTTTTTACGTAAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * *
15558473 GTTTCTC-CTTTGGATCTTAGACGAACTTCTAAACTAGT-ACAGCTTTTACGAGTTCTTTCATAA
66 GTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCA-AGCTTTTACGAGTTCTTTTATAA
* *
15558536 CTTTGGTTCCTCAAAGTATTCAAGACGATCCATTCCTTCGAG-AATTATTCCGAACATTCCATGC
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* * * *
15558600 TTGGGAAATCGTATCATTCGGTCT
194 TCGAGAAATCGCATCATTTGGTCT
* * * *
15558624 AAATAGTTTGTCATTTTGTAAGCAACTTTTGGTCTTTCAATTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * *
15558689 ATTTCTCTCTAGATTCTTAGAC-AATCTTTTGAACTTGTCAAGCTTTTACTATTTCTTCTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAA-CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * * *
15558753 TTCGATTCCTTAAATTATTCCAA-ATGATGCATTCCTTCGAGCAA-TATTCTGAACATTCCATTC
130 TTCGGTTCCTTAAAGTATT-CAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* * *
15558816 TCAAGAAATCGCATCATTCGAT-T
194 TCGAGAAATCGCATCATTTGGTCT
* * *
15558839 AAAATAGTTTGTCAGTTTGTAAACAACTTTTGG--TTTGAATTAAATACTTATTTTTGTGTA-AA
1 -AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAA
* * * * * ** * * * *
15558901 TTGTTTCTCTATTGGTTATTGGACAAACTT-TCGAACTAGGAAAACTTTTACTA-TTTTTGTTAG
64 TTGTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTT-TTAT
* * * * **
15558964 AACTTGGGCTCCTTCAAGTATTCAAGACGATCCATTTCGTT-GAGCAATT-TTCTAAACATTCCA
127 AACTTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTATTCCGAACATTCCA
* **
15559027 TGCTCGAGAAATTGCATCACGTGGTCT
191 TGCTCGAGAAATCGCATCATTTGGTCT
* * *
15559054 AAATAGTTTGTCATTTTGTAAACAACTTTTAGTCTTTGAATTAAAAACTTATTTACGTAAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * *
15559119 GCTTCTCTCTTGGTTCTTTACACGAACTTCTAAACTTGTCAAGCTTTGATGAGTT-TTTTAATAA
66 GTTTCTCTCTTGGTTC-TTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTT-ATAA
* * * * *
15559183 CTTTGGCTCC--------TTCAAGACGATCCATTCTTTCGAGTAA-TATTCCAAACATTCCATGC
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
*
15559239 TCGAGAAATCGCATCATTTGATCT
194 TCGAGAAATCGCATCATTTGGTCT
* * ***
15559263 AAATATTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTGCATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * ** ** * * *
15559328 GTTTCACTCTTAGTTCTTGGGTGAACTTCCAAAGTTGTCAAACTTTTACGAGTTCTTGTATAACT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
* * ** * * * ** * **
15559393 TAGGTTCCTTAAAGTATTC-TGTGTGATCCATTCCTTCTAGAAAATT-TT-TGATTATTCAATAT
131 TCGGTTCCTTAAAGTATTCAAG-ACGATCCATTCCTTCGAG-CAATTATTCCGAACATTCCATGC
* * *
15559455 TCGAAAAATTGCATCATTTGATCT
194 TCGAGAAATCGCATCATTTGGTCT
* * * * * * * *
15559479 AAATAGTTTATCATTTTGTAAACAACTTTTGTTCCTTGAATTAAAAACTTGTTGACGTGGGAACT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * * *
15559544 GTTTCTCTCTTGGTTCTTGGATGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAGAAAT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
** * * * *
15559609 TTAGTTCCTTAAAGTATT-ATAGACGATCCATTTCTTCGAGCAA--ATTTCGGACATTCCATTCT
131 TCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * * *
15559671 CGGGAAATCGAATGATTTGGTTT
195 CGAGAAATCGCATCATTTGGTCT
* *
15559694 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * *
15559759 GTTTTTCTCTTGGTTCTTGGAC-ATACTT-TCGAA-TTGTAAAACTTTTACGAGTTCTTTTATAA
66 GTTTCTCTCTTGGTTCTTAGACGA-ACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATAA
* * *
15559821 C-TCAGGTTCCTTAAAGTATTCAAGTCGATCCATTTCTTCGAGCAATT-TTCCAAACATTCCATG
129 CTTC-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATG
* *
15559884 CTCGAGAAATTGCATCTTTTGGTCT
193 CTCGAGAAATCGCATCATTTGGTCT
* * * * * * * * * *
15559909 AAACAGTGTGCCATTTCGAAAACAAGTTTTGCTCTTTAAATTAATAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* *
15559974 GTTTCTACT-TTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACAAGTTCTTTTATAAC
66 GTTTCT-CTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* *
15560038 TTTGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGC-ATTATTCCGAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * *
15560102 CGGGAAATCGCATCATTCGATCT
195 CGAGAAATCGCATCATTTGGTCT
* * * *
15560125 AAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAATCATATTTATGTGAAAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * *
15560190 ATTTCTCTTTTGATTCTTAGA-TAATCTTCTGAAGTTGTCAAGCTTTTACTATTTCTTTTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAA-CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* ** * ** *
15560254 TTCGGTTCCTTAAATTATTCAAGGTGATCTATTCCTTCGAGCAA-TATTCTAAACATTCCATTCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * * *
15560318 CGGGAAATCGCCTCATTCGGTCA
195 CGAGAAATCGCATCATTTGGTCT
* *
15560341 AAATAG--TGTCATTTTCTAAACAACTTTTGG--TTTGAATTAAATACTTATTTATGTGTA-AAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAAT
* * * * ** * * * *
15560401 TGTTTCTCTTTTGGTTCTT-GCATGGACTT-TCGAACTAGGAAAACTTTTACTATTTCTATTATA
65 TGTTTCTCTCTTGGTTCTTAG-ACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATA
* * * * * ***
15560464 AATTTGGTTCCTTCAAGTATTCAAGGCGATCCATTTCTTCGAGCAATT-TTTTAAACATTCCATG
128 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATG
* *
15560528 CTCGAGAAATTGCATCACTTGGTCT
193 CTCGAGAAATCGCATCATTTGGTCT
* * *
15560553 AAATAGTTTGTCATTTTGTAAACAAATTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * *
15560618 ATTTCTTTCTTGGTTCTTTAGATGAACTTCTGAACTTGTCAAGCTTTTACGAGGTCTTTAATAAC
66 GTTTCTCTCTTGGTTC-TTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * *
15560683 TTTGGTTCCTTAAAGTGTTCAAGACGATCCATTCTTTCGAGTAA-TATTCCAAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* *
15560747 CGATAAATCGTATCATTTGGTCT
195 CGAGAAATCGCATCATTTGGTCT
* * ***
15560770 AAATA-TATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTAAAACTTATTTGCATGAGAAT
1 AAATAGT-TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * * * *
15560834 TATTTCTCTCTTAGTTCTTGGATGAACTTCCGAAGTTGTCGAA-CTTTTATGAGTTCTTTTATAA
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTC-AAGCTTTTACGAGTTCTTTTATAA
* * * * * * ** *
15560898 CTTAGGTTCCTTAAAGTATTCTATG-TGATCCATTCCTTCTAGAAATT-TTTCGATTATTCAATG
129 CTTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATG
* * * *
15560961 TTCGAAAAATTGCATCATTTGATCT
193 CTCGAGAAATCGCATCATTTGGTCT
* * * * * * * *
15560986 AAATAGTTTATCATTTTGTAAACAACTTTTGTTTTTTGAATTAAAAACTTGTTGACGTGGGAACT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * *
15561051 GTTTCTCTGTTGGTTCTTGGATGAACCTTC-GAACTTGTCAAACTTTTACAAGTTCTTTTAGAAC
66 GTTTCTCTCTTGGTTCTTAGACGAA-CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
** * * * * *
15561115 TTCAATTCCTTACAGTATT-ATAGACGATCCATTTCTTCAAGCCATT-TTCCGAACATTCCATTC
130 TTCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* * ** *
15561178 TTGGGAAATCAAATCATTTGGTTT
194 TCGAGAAATCGCATCATTTGGTCT
* *
15561202 AAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * * * *
15561267 GTTTCTCTGTTGGTTCTTGGACGTAA-TTCCGAA-TCGTAAAACATTTACGATTTCTTGTATAAC
66 GTTTCTCTCTTGGTTCTTAGACG-AACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* *
15561330 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATT-TTCCAAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
** *
15561394 CGAGAAATTACATCTTTTGGTCT
195 CGAGAAATCGCATCATTTGGTCT
* * * * *
15561417 AAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGGATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* ** * *
15561482 GTTTCTC-CTTTGGTTTTTAGACGAACTTCTGAACTAATCAAGCTTTTATGAATTCTTTTATAAC
66 GTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * *
15561546 TAT-GGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAG-AATTATTCTGAACATTCAATGC
130 T-TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* * *
15561609 TCGGGAAATTGCATCATTCGGTCT
194 TCGAGAAATCGCATCATTTGGTCT
* * * *
15561633 AAATAGTTTGTCATTTTGTAAACAACTTTTGGGCTTTCAATTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * *
15561698 ATTTCTCTCTTGATTCTTAGAC-AATCTTCTGAACTTGTCAAGCTTTTACTATTTATTTTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAA-CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * *
15561762 TTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCAAGCAA-TACTT-TGAACATTCCATTC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTA-TTCCGAACATTCCATGC
* * *
15561825 T-AAGGAAATCGCATCATTCGGTCA
194 TCGA-GAAATCGCATCATTTGGTCT
* *
15561849 AAATAGTTTGTCATTTTGTAAACAACTTTTGG--TTTGAATTAAATACTTATTTATGAGTA-AAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAAT
* * * * * * * *
15561911 TGTTTCTCTATTTGTTCTTGGACGAACTT-TCGAACTAGGT-AAACTTTTACTATTTCTGTTATA
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACT-TGTCAAGCTTTTACGAGTTCTTTTATA
* * * * **
15561974 ACTTCAGTTCGTTCAAGTATTCAAGACGATCCATTTCTTCGAGCAATT-TTCTAAACATTCCATG
128 ACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATG
* *
15562038 CTCGAGAAATTGCATCACTTGGTCT
193 CTCGAGAAATCGCATCATTTGGTCT
* * * * * *
15562063 AAACAGTTTGTTATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTAAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * *
15562128 ATTTCTCTCTTGGTTCTTTAGATGAACTTATGAACTTGTCAAGCTTTTACGAGTTCTTTAATAAC
66 GTTTCTCTCTTGGTTC-TTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * *
15562193 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGTAA-TATTCCAAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
*
15562257 CAAGAAATCGCATCATTTGGTCT
195 CGAGAAATCGCATCATTTGGTCT
* * *
15562280 AAATATTTTGTCATTTTGTAAAC-ACGTTTTGGTCTTTGAATTAAAAATTTATTTATGTGAAAAT
1 AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAAT
* * * * * * * *
15562344 TGTTTCTTTCTTGGTTCTTCGACGTACTTCCGAACTCGTAAAACTTTTACGCGTTCTTTTATAAC
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* **
15562409 TTCGGTTCCTTAAAGTATTCAAGACGATCCACTT-CTTCGAGAAATT-TTCAAAACATTCCATGC
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTATTCCGAACATTCCATGC
* **
15562472 TCGAGAAATTGCATTTTTTGGTCT
194 TCGAGAAATCGCATCATTTGGTCT
* * *
15562496 AAATAGTTTGTCATTTTGAAAAAAAGTTTTGGTCTTT-AACTTAAAAACTTATTTATGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTATGTGAGAAT
* * * *
15562560 TGGTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTAAAGCTTTTACGAGTTTTTTTATAA
65 TGTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAA
* * * * *
15562624 CTTTGGTCCCTTAAAGTATTCAAGACGATCCATTCCTCCGAGTAA-TATTTCGAACATTCCATGC
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* *
15562688 TCGAGAAATCGCATCATTCGGTCC
194 TCGAGAAATCGCATCATTTGGTCT
*
15562712 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATA-ATATTTATGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA-ACTTATTTATGTGAGAAT
* * * * * * * ** *
15562776 TATTTCACTCTTGATTCTTAGACAAACCTCTGAACTTGTCAGGATTTTATTATTTCTTTTATAAC
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * *
15562841 TTCAGTTCGTCAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TATTCCGAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* *
15562905 CGGGAAATCGCATCATTCGGTCT
195 CGAGAAATCGCATCATTTGGTCT
* *
15562928 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * ** *
15562993 ATTTCACTCTTGATTCTTAGACAAACCTCTGAACTTGTCAAGATTTTATTATTTCTTTTATAACT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
* * * * *
15563058 TCAGTTCCTCAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TATTCCGAACATTCTATGCTC
131 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCTC
* *
15563122 GGGAAATCGCATCATTCGGTCT
196 GAGAAATCGCATCATTTGGTCT
* *
15563144 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * * *
15563209 ATTTCTCTCTTGATTCTTAGACAAACTTTTGAACTTGTCAAGATTTTACTATTTCTTTTATAATT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
* * *
15563274 TCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TATTCCAAACATTCCATGCTC
131 TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCTC
* * **
15563338 GGGAAATCACATCATTCAGTCT
196 GAGAAATCGCATCATTTGGTCT
* * * *
15563360 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAGTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * * * *
15563425 ATTTATCTCTTGATTCTTAGACAAACTT-TAGAACTTATGAAGCTTTTACTATTTCTTCTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
** * * * * * *
15563489 TTCGGTTCAGT-AATTTTTCAAGATGATCCATTCCTTCAAGCAA-TATTCTGAACATTCCATTCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * *
15563552 CGAGAAATCACATCATTCGGTCA
195 CGAGAAATCGCATCATTTGGTCT
*
15563575 AAATAGTTTGTCATTTTGTAAACAACTTTTTGG--TTTGAATTAAATACTTATTTATGTGCA-AA
1 AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAA
* * * * ** * *
15563637 TTGTTTCTCTATTGGTTCTTGGACAAACTT-TCGAACTAGGAAAACTTTTACTA-TT-TTTGTCA
64 TTGTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTT-T-A
* * * **
15563699 TAACTTCGGTTCCTTCAAGTATTCAAGACAATCCATTTCTTCGAGCAATT-TTCTAAACATTCCA
126 TAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCA
** *
15563763 TGCTCGAGAAATTACATCACTTGGTCT
191 TGCTCGAGAAATCGCATCATTTGGTCT
* * *
15563790 AAATAGTTTGTCATTTTGTAAACAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * *
15563855 GTTTCTCTCTTGGTTCTTTAGACGAACTTCTAAACTTGTCAAGCGTTTACGAGTTCTTTAATAAC
66 GTTTCTCTCTTGGTTC-TTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * *
15563920 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGTAA-TATTCCAAACATTCTATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
*
15563984 CGAGAAATCGCATCATTTGGTAT
195 CGAGAAATCGCATCATTTGGTCT
* * ***
15564007 AAATATTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTCCATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * *
15564072 GTTTCTCTCTTAGTACTTAGATGAACTTCCT-AAATTGTCAAACTTTTACGAGTTCTTTTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAACTT-CTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * * * ** * * *
15564136 TTAGGTTCCTTAAAGTATTCTATG-GGATCCATTCCTTCTAGAAATT-TTTCGATTAATCAATGT
130 TTCGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
* * * *
15564199 TTG-GAAAATTGCATCATTAGATCT
194 TCGAG-AAATCGCATCATTTGGTCT
* * * * * *
15564223 AAATAGTTTATCATTTTGTAAACAACTTTTGTTCTTTGAATTAAAAACTTGTTGACGTGGGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * * * *
15564288 GTTTCTCTCTTGGTTCTTGGATGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAGAACT
66 GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
* ** * *
15564353 TCGGTTCCTTAAAGTATT-ATAGACGATCCATT-TTTTTACGCAATT-TTTCGAACATTCCATTC
131 TCGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGA-GCAATTATTCCGAACATTCCATGC
* * *
15564415 TCGGGAAATCGAATCATTTGGTTT
194 TCGAGAAATCGCATCATTTGGTCT
*
15564439 AAATAGTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAAAACTTATTTATGTG-GAAAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAG-AAT
* * * * * * *
15564503 TGTTTCTCTCTTGCTTCTTGGACGGACTTCCGAA-TCGTAAAACTTTTACGAGTTCTTTTATAAC
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * *
15564567 TTCGGTTCCTTAAAGTACTCAAGAAGATCCATTTCTTCGAGCAATT-TTCCAAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * *
15564631 CGAGAAATTGTATCTTTTGGTCT
195 CGAGAAATCGCATCATTTGGTCT
* * * *
15564654 AAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * * * *
15564719 ATTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACGACTACTTTTATATC
66 GTTTCTCTC-TTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * *
15564783 TTTGGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAG-AATTATTTCGAACATTCCATGCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * *
15564847 CGGGAAATCGCATCATTCGATCT
195 CGAGAAATCGCATCATTTGGTCT
* * *
15564870 AAATAGTTTGTCATTTTGTAAACGACTTTTGGTCTTTGAATTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* * ** *
15564935 ATTTCTCTCTTGATTCTTAGAC-AATCTTCTGAACTTGTCAAGCTTTTAATATTTCTTTTATAAC
66 GTTTCTCTCTTGGTTCTTAGACGAA-CTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAAC
* * * * *
15564999 TTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCGAGCAA-TATGCTGAACATTCCATTCT
130 TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCT
* * *
15565063 CGAGAAATCGCATCATTCGATCA
195 CGAGAAATCGCATCATTTGGTCT
* *
15565086 AAATAGTTTGTCATATTGTAAACAACTTTTGG--TTTGAATTAAATACTTATTTATGTGTA-AAT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAAT
* * * ** * *** *
15565148 TTTTTCTCTCTTGGTTCTTCGACGAACTT-TCGAACTAGGAAAACTTTTACTCTTTCTGTTATAA
65 TGTTTCTCTCTTGGTTCTTAGACGAACTTCT-GAACTTGTCAAGCTTTTACGAGTTCTTTTATAA
* * * * **
15565212 CTTCGATTCCTTCAAGTATTCAAGACGATCCATTTCTTCAAGCAATT-TTCTAAACATTCCATGC
129 CTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGC
** *
15565276 TCGAGAAATTACATCACTTGGTCT
194 TCGAGAAATCGCATCATTTGGTCT
** * * *
15565300 AAATAGTTTCCCATTTCGTACACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
* *
15565365 GTTTCTCTCTTGGTTCTTTACACGAACTTATGAA
66 GTTTCTCTCTTGGTTC-TTAGACGAACTTCTGAA
15565399 GAACACTTAA
Statistics
Matches: 5889, Mismatches: 939, Indels: 325
0.82 0.13 0.05
Matches are distributed among these distances:
208 47 0.01
209 130 0.02
211 2 0.00
212 152 0.03
213 19 0.00
214 689 0.12
215 829 0.14
216 3379 0.57
217 628 0.11
218 11 0.00
219 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (217 bp):
AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
GTTTCTCTCTTGGTTCTTAGACGAACTTCTGAACTTGTCAAGCTTTTACGAGTTCTTTTATAACT
TCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTATTCCGAACATTCCATGCTC
GAGAAATCGCATCATTTGGTCT
Found at i:15561466 original size:647 final size:647
Alignment explanation
Indices: 15558192--15565393 Score: 7327
Period size: 647 Copynumber: 11.1 Consensus size: 647
15558182 TGCTCACATC
* * * *
15558192 AAATAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAAAAACTTATTTATGTGACAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * ** *
15558257 GA-TTCTCTCTTGGTTCTTGGACGTACTTCCGAACTCATAAAACTTTTATGAGTTCTTTTATAAC
66 -ATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGT-CAACTTTTATGAGTTCTTTTATAAC
* * * * *
15558321 TTCA-GTTCCTTAAAGTATTCAAGACGATCCATTTCATCGAGCAATTTTCCAAACATTCCGTGCT
129 TT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * * * * * * * * *
15558385 CGAGAAATTGCATCTTTTGGTCCAAAAAGTTTGTTATTTTGAAAAAAAGTTTTGGTCTTTAAATT
193 CGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15558450 AAAAACTTTTTTACGTAAGAATTGTTTCTC-CTTTGGATCTTAGACGAA-CTTCTAAACTAGT-A
258 AAAAACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTTAGACGAACCTTC-GAACTTGTCA
* * * * *
15558512 CAGCTTTTACGAGTTCTTTCATAACTTTGGTTCCTCAAAGTATTCAAGACGATCCATTCCTTCGA
321 -AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA
* * * *
15558577 G-AATTATTCCGAACATTCCATGCTTGGGAAATCGTATCATTCGGTCTAAATAGTTTGTCATTTT
385 GCAATT-TTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * * * * *
15558641 GTAAGCAACTTTTGGTCTTTCAATTAAAATCATATTTATGTGAGAATTATTTCTCTCTAGATTCT
449 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCT
* * * * * * *
15558706 TAGAC-AATCTTTTGAACTTGTCAAGCTTTTACTATTTCTTCTATAACTTCGATTCCTTAAATTA
514 TAGACGAA-CTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTA
* * * * ** * *
15558770 TTCCAA-ATGATGCATTCCTTCGAGCAATATTCTGAACATTCCATTCTCAAGAAATCGCATCATT
578 TT-CAAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATT
* *
15558834 CGAT-T
642 TGGTCT
* * * **
15558839 AAAATAGTTTGTCAGTTTGTAAACAACTTTTGG--TTTGAATTAAATACTTATTTTTGTGTA-AA
1 -AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTG-AGAA
* * * * * * * ** * *
15558901 TTGTTTCTCTATTGGTTATTGGACAAACTTTCGAACTAGGAAAACTTTTACT-A-TTTTTGTTAG
64 TTATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACT-TGTCAACTTTTA-TGAGTTCTT-TTAT
* * * * *
15558964 AACTTGGGCTCCTTCAAGTATTCAAGACGATCCATTTCGTT-GAGCAA-TTTTCTAAACATTCCA
126 AACTTAGGTTCCTTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTC-GAACATTCCA
* * * *
15559027 TGCTCGAGAAATTGCATCACGT-GGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTAGTCTTT
189 TGCTCGGGAAATCGCATCA-TTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * *
15559091 GAATTAAAAACTTATTTACGTAAGAATTGCTTCTCTCTTGGTTCTTTACACGAA-CTTCTAAACT
253 GAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTC-TTAGACGAACCTTC-GAACT
* * * * *
15559155 TGTCAAGCTTTGATGAGTT-TTTTAATAACTTTGGCTCC--------TTCAAGACGATCCA-TTC
316 TGTCAAACTTTTACGAGTTCTTTT-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTC
* * * * *
15559210 TTTCGAGTAATATTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGATCTAAATATTTTGTC
380 -TTCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* *** * *
15559275 ATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTGCATGAGAATTGTTTCACTCTTA
444 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTG
* ** ** * * * *
15559340 GTTCTTGGGTGAACTTCCAAAGTTGTCAAACTTTTACGAGTTCTTGTATAACTTAGGTTCCTTAA
509 GTTCTTAGACGAACTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAA
* ** * * * ** ** * ** * *
15559405 AGTATTC-TGTGTGATCCATTCCTTCTAGAAAATTTT-TGATTATTCAATATTCGAAAAATTGCA
574 AGTATTCAAG-ACGATCCATTTCTTCGAG-CAATTTTCCAAACATTCCATGCTCGAGAAATCGCA
*
15559468 TCATTTGATCT
637 TCATTTGGTCT
* * * * * * * *
15559479 AAATAGTTTATCATTTTGTAAACAACTTTTGTTCCTTGAATTAAAAACTTGTTGACGTGGGAACT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * ** * *
15559544 GTTTCTCTCTTGGTTCTTGGATGAACCTCCGAACTTGTCAAACTTTTACAAGTTCTTTTAGAAAT
66 ATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTC-AACTTTTATGAGTTCTTTTA-TAAC
* * * *
15559609 TTA-GTTCCTTAAAGTATT-ATAGACGATCCATTTCTTCGAGCAA-ATTTCGGACATTCCATTCT
129 TTAGGTTCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * *
15559671 CGGGAAATCGAATGATTTGGTTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
193 CGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * *
15559736 AAAAACTTATTTATGTGAAAAATGTTTTTCTCTTGGTTCTTGGAC-ATACTTTCGAA-TTGTAAA
258 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGA-ACCTTCGAACTTGTCAA
*
15559799 ACTTTTACGAGTTCTTTTATAAC-TCAGGTTCCTTAAAGTATTCAAGTCGATCCATTTCTTCGAG
322 ACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAG
* * * * * * * *
15559863 CAATTTTCCAAACATTCCATGCTCGAGAAATTGCATCTTTTGGTCTAAACAGTGTGCCATTTCGA
386 CAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGT
* * * * *
15559928 AAACAAGTTTTGCTCTTTAAATTAATAACTTATTTACGTGAGAATTGTTTCTACT-TTGGTTCTT
451 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCT-CTCTTGGTTCTT
* * * * * * *
15559992 AGACGAACTTCTGAACTAGTCAAGCTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
515 AGACGAACTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTATT
* * * * *
15560057 CAAGATGATCCATTCCTTCGAGC-ATTATTCCGAACATTCCATGCTCGGGAAATCGCATCATTCG
580 CAAGACGATCCATTTCTTCGAGCAATT-TTCCAAACATTCCATGCTCGAGAAATCGCATCATTTG
*
15560121 ATCT
644 GTCT
* * * * * *
15560125 AAATAGTTTGTCATTTTGTAAACAACTTTTCGTCTTTGAATTAAAATCATATTTATGTGAAAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * *
15560190 ATTTCTCTTTTGATTCTTAGA-TAATCTTCTGAAGTTGTCAAGCTTTTACT-ATTTCTTTTATAA
66 ATTTCTCTCTTGGTTCTTAGACGAA-CTTCCGAACTTGTCAA-CTTTTA-TGAGTTCTTTTATAA
* * ** * * * *
15560253 CTTCGGTTCCTTAAATTATTCAAGGTGATCTATTCCTTCGAGCAA-TATTCTAAACATTCCATTC
128 CTTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGC
* * *
15560317 TCGGGAAATCGCCTCATTCGGTCAAAATAG--TGTCATTTTCTAAACAACTTTTGG--TTTGAAT
192 TCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * * **
15560378 TAAATACTTATTTATGTGTA-AATTGTTTCTCTTTTGGTTCTT-GCATGGACTTTCGAACTAGGA
257 TAAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTAG-ACGAACCTTCGAACTTGTC
* * * * * * *
15560441 AAACTTTTACTATTTCTATTATAAATTTGGTTCCTTCAAGTATTCAAGGCGATCCATTTCTTCGA
320 AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA
*** * *
15560506 GCAATTTTTTAAACATTCCATGCTCGAGAAATTGCATCACTTGGTCTAAATAGTTTGTCATTTTG
385 GCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
15560571 TAAACAAATTTTGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTTTCTTGGTTCTT
450 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTC-T
* * * ** * *
15560636 TAGATGAACTTCTGAACTTGTCAAGCTTTTACGAGGTCTT-TAATAACTTTGGTTCCTTAAAGTG
514 TAGACGAACTTCTGAACTTGTAAAACTTTTACGATTTCTTGT-ATAACTTCGGTTCCTTAAAGTA
* * * *
15560700 TTCAAGACGATCCA-TTCTTTCGAGTAATATTCCAAACATTCCATGCTCGATAAATCGTATCATT
578 TTCAAGACGATCCATTTC-TTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATT
15560764 TGGTCT
642 TGGTCT
* * *
15560770 AAATA-TATTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTTAAAACTTATTTGCATGAGAAT
1 AAATAGT-TTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAAT
* * * *
15560834 TATTTCTCTCTTAGTTCTTGGATGAACTTCCGAAGTTGTCGAACTTTTATGAGTTCTTTTATAAC
65 TATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTC-AACTTTTATGAGTTCTTTTATAAC
* * * * ** * *
15560899 TTAGGTTCCTTAAAGTATTCTATG-TGATCCATTCCTTCTAGAAATTTTTCGATTATTCAATGTT
129 TTAGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
** * * * * * *
15560963 CGAAAAATTGCATCATTTGATCTAAATAGTTTATCATTTTGTAAACAACTTTTGTTTTTTGAATT
193 CGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * * * *
15561028 AAAAACTTGTTGACGTGGGAACTGTTTCTCTGTTGGTTCTTGGATGAACCTTCGAACTTGTCAAA
258 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTCGAACTTGTCAAA
* * ** * *
15561093 CTTTTACAAGTTCTTTTAGAACTTCAATTCCTTACAGTATT-ATAGACGATCCATTTCTTCAAGC
323 CTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTTCTTCGAGC
* * * * ** * *
15561157 CATTTTCCGAACATTCCATTCTTGGGAAATCAAATCATTTGGTTTAAATAGTTTTTCATTTTGTA
387 AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
15561222 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAAAATTGTTTCTCTGTTGGTTCTTGG
452 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAG
* * *
15561287 ACGTAA-TTCCGAA-TCGTAAAACATTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTATTC
517 ACG-AACTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTATTC
** *
15561350 AAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTACATCTTTTGGT
581 AAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGT
15561415 CT
646 CT
* * *
15561417 AAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGGATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * ** *
15561482 GTTTCTC-CTTTGGTTTTTAGACGAACTTCTGAACTAATCAAGCTTTTATGAATTCTTTTATAAC
66 ATTTCTCTC-TTGGTTCTTAGACGAACTTCCGAACTTGTCAA-CTTTTATGAGTTCTTTTATAAC
* * *
15561546 -TATGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAG-AATTATTCTGAACATTCAATGC
129 TTA-GGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGC
* * *
15561609 TCGGGAAATTGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGGCTTTCAAT
192 TCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
15561674 TAAAATCATATTTATGTGAGAATTATTTCTCTCTTGATTCTTAGAC-AATCTTCTGAACTTGTCA
257 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTC-GAACTTGTCA
* * * * * * * *
15561738 AGCTTTTACTATTTATTTTATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCAAG
321 AACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAG
* * * *
15561803 CAATACTTT--GAACATTCCATTCT-AAGGAAATCGCATCATTCGGTCAAAATAGTTTGTCATTT
386 CAAT--TTTCCGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
* * * *
15561865 TGTAAACAACTTTTGG--TTTGAATTAAATACTTATTTATGAGTA-AATTGTTTCTCTATTTGTT
448 TGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTT
* * * * * *
15561927 CTTGGACGAACTT-TCGAACTAGGT-AAACTTTTACTATTTC-TGTTATAACTTCAGTTCGTTCA
512 CTTAGACGAACTTCT-GAACT-TGTAAAACTTTTACGATTTCTTG-TATAACTTCGGTTCCTTAA
* *
15561989 AGTATTCAAGACGATCCATTTCTTCGAGCAATTTTCTAAACATTCCATGCTCGAGAAATTGCATC
574 AGTATTCAAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATC
*
15562054 ACTTGGTCT
639 ATTTGGTCT
* * * *
15562063 AAACAGTTTGTTATTTTGTAAACAAGTTTTGGCCTTTGAATTAAAAACTTATTTACGTAAGAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* ** * *
15562128 ATTTCTCTCTTGGTTCTTTAGATGAACTTATGAACTTGTCAAGCTTTTACGAGTTCTTTAATAAC
66 ATTTCTCTCTTGGTTC-TTAGACGAACTTCCGAACTTGTCAA-CTTTTATGAGTTCTTTTATAAC
* * * * * *
15562193 TTTGGTTCCTTAAAGTATTCAAGACGATCCATTCTTTCGAGTAATATTCCAAACATTCCATGCTC
129 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC
** * *
15562258 AAGAAATCGCATCATTTGGTCTAAATATTTTGTCATTTTGTAAAC-ACGTTTTGGTCTTTGAATT
194 GGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAATT
* * * * * * *
15562322 AAAAATTTATTTATGTGAAAATTGTTTCTTTCTTGGTTCTTCGACGTA-CTTCCGAACTCGTAAA
258 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTT-CGAACTTGTCAA
* * *
15562386 ACTTTTACGCGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCACTTCTTCGAGA
322 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGC
** * ** *
15562451 AATTTTCAAAACATTCCATGCTCGAGAAATTGCATTTTTTGGTCTAAATAGTTTGTCATTTTGAA
387 AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
15562516 AAAAAGTTTTGGTCTTT-AACTTAAAAACTTATTTATGTGAGAATTGGTTCTC-CTTTGGTTCTT
452 AACAACTTTTGGTCTTTGAA-TTAAAAACTTATTTATGTGAGAATTGTTTCTCTC-TTGGTTCTT
* * * * *
15562579 AGACGAACTTCTGAACTAGTAAAGCTTTTACGAGTTT-TTTTATAACTTTGGTCCCTTAAAGTAT
515 AGACGAACTTCTGAACTTGTAAAACTTTTACGA-TTTCTTGTATAACTTCGGTTCCTTAAAGTAT
* * * * *
15562643 TCAAGACGATCCATTCCTCCGAGTAATATTT-CGAACATTCCATGCTCGAGAAATCGCATCATTC
579 TCAAGACGATCCATTTCTTCGAGCAAT-TTTCCAAACATTCCATGCTCGAGAAATCGCATCATTT
*
15562707 GGTCC
643 GGTCT
* * *
15562712 AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATA-ATATTTATGTGAGAAT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAAT
* * * * * * *
15562776 TATTTCACTCTTGATTCTTAGACAAACCTCTGAACTTGTCAGGA-TTTTATTATTTCTTTTATAA
65 TATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCA--ACTTTTATGAGTTCTTTTATAA
* * * * * *
15562840 CTTCA-GTTCGTCAAATTATTCAAGATGATCCATTCCTTCGAGCAATATTCCGAACATTCCATGC
128 CTT-AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
15562904 TCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
192 TCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * * *
15562969 TAAAATCATATTTATGTGAGAATTATTTCACTCTTGATTCTTAGACAAACC-TCTGAACTTGTCA
257 TAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTC-GAACTTGTCA
** * * * * * *
15563033 AGA-TTTTATTATTTCTTTTATAACTTCAGTTCCTCAAATTATTCAAGATGATCCATTCCTTCGA
321 A-ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGA
* * * *
15563097 GCAATATTCCGAACATTCTATGCTCGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTG
385 GCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * *
15563162 TAAACAACTTTTGGTCTTTGAATTAAAATCATATTTATGTGAGAATTATTTCTCTCTTGATTCTT
450 TAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTT
* * * * * * *
15563227 AGACAAACTTTTGAACTTGTCAAGA-TTTTACTATTTCTTTTATAATTTCGGTTCCTTAAATTAT
515 AGACGAACTTCTGAACTTGT-AAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTAT
* * * * * **
15563291 TCAAGATGATCCATTCCTTCGAGCAATATTCCAAACATTCCATGCTCGGGAAATCACATCATTCA
579 TCAAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTG
15563356 GTCT
644 GTCT
* * * *
15563360 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAAGTAAAATCATATTTATGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * ** * * * *
15563425 ATTTATCTCTTGATTCTTAGACAAACTTTAGAACTTATGAAGCTTTTACT-ATTTCTTCTATAAC
66 ATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAA-CTTTTA-TGAGTTCTTTTATAAC
* ** * * * * * *
15563489 TTCGGTTCAGT-AATTTTTCAAGATGATCCATTCCTTCAAGCAA-TATTCTGAACATTCCATTCT
129 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCT
* * *
15563552 CGAGAAATCACATCATTCGGTCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGG--TTTGAAT
193 CGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGAAT
* * * * * * **
15563615 TAAATACTTATTTATGTGCA-AATTGTTTCTCTATTGGTTCTTGGACAAACTTTCGAACTAGGAA
257 TAAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTCGAACTTGTCA
* * *
15563679 AACTTTTACTA-TT-TTTGTCATAACTTCGGTTCCTTCAAGTATTCAAGACAATCCATTTCTTCG
321 AACTTTTACGAGTTCTTT-T-ATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCG
** ** *
15563742 AGCAATTTTCTAAACATTCCATGCTCGAGAAATTACATCACTTGGTCTAAATAGTTTGTCATTTT
384 AGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * *
15563807 GTAAACAGCTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCT
449 GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTC-
* * * * * *
15563872 TTAGACGAACTTCTAAACTTGTCAAGCGTTTACGAGTTCTT-TAATAACTTTGGTTCCTTAAAGT
513 TTAGACGAACTTCTGAACTTGTAAAACTTTTACGATTTCTTGT-ATAACTTCGGTTCCTTAAAGT
* * *
15563936 ATTCAAGACGATCCA-TTCTTTCGAGTAATATTCCAAACATTCTATGCTCGAGAAATCGCATCAT
577 ATTCAAGACGATCCATTTC-TTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCAT
*
15564000 TTGGTAT
641 TTGGTCT
* * *
15564007 AAATATTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTCCATGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * * *
15564072 GTTTCTCTCTTAGTACTTAGATGAACTTCCTAAATTGTCAAACTTTTACGAGTTCTTTTATAACT
66 ATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTC-AACTTTTATGAGTTCTTTTATAACT
* * * * ** * * * *
15564137 TAGGTTCCTTAAAGTATTCTATG-GGATCCATTCCTTCTAGAAATTTTTCGATTAATCAATGTTT
130 TAGGTTCCTTAAAGTATTC-AAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC
* * * * * *
15564201 GGAAAATTGCATCATTAGATCTAAATAGTTTATCATTTTGTAAACAACTTTTGTTCTTTGAATTA
194 GGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
* * * * * * *
15564266 AAAACTTGTTGACGTGGGAATTGTTTCTCTCTTGGTTCTTGGATGAACCTCCGAACTTGTCAAAC
259 AAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTCGAACTTGTCAAAC
* * **
15564331 TTTTACAAGTTCTTTTAGAACTTCGGTTCCTTAAAGTATT-ATAGACGATCCATTT-TTTTACGC
324 TTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCA-AGACGATCCATTTCTTCGA-GC
* * * * *
15564394 AATTTTTCGAACATTCCATTCTCGGGAAATCGAATCATTTGGTTTAAATAGTTTGTCATTTTGTA
387 AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
15564459 AACAACTTTTGGCCTTTGAATTAAAAACTTATTTATGTG-GAAATTGTTTCTCTCTTGCTTCTTG
452 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAG-AATTGTTTCTCTCTTGGTTCTTA
* * * * * *
15564523 GACGGACTTCCGAA-TCGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTACTC
516 GACGAACTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTATTC
* * * *
15564587 AAGAAGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATTGTATCTTTTGGT
581 AAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGT
15564652 CT
646 CT
* *
15564654 AAATAGTTTGTCATTTTGAAAACAAGTTTTGGTCTTTAAATTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* * * * * *
15564719 ATTTCTC-CTTTGGTTCTTAGACGAACTTCTGAACTAGTCAAGCTTTTACGACTACTTTTATATC
66 ATTTCTCTC-TTGGTTCTTAGACGAACTTCCGAACTTGTCAA-CTTTTATGAGTTCTTTTATAAC
* *
15564783 TTTGGTTCCTTAAAGTATTCAAGAGGATCCATTCCTTCGAG-AATTATTTCGAACATTCCATGCT
129 TTAGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCT
* *
15564847 CGGGAAATCGCATCATTCGATCTAAATAGTTTGTCATTTTGTAAACGACTTTTGGTCTTTGAATT
193 CGGGAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
15564912 AAAATCATATTTATGTGAGAATTATTTCTCTCTTGATTCTTAGAC-AATCTTCTGAACTTGTCAA
258 AAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTC-GAACTTGTCAA
* ** * * * *
15564976 GCTTTTAATATTTCTTTTATAACTTCGGTTCCTTAAATTATTCAAGATGATCCATTCCTTCGAGC
322 ACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGC
* * * * * * * *
15565041 AATATGCTGAACATTCCATTCTCGAGAAATCGCATCATTCGATCAAAATAGTTTGTCATATTGTA
387 AATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
* * *
15565106 AACAACTTTTGG--TTTGAATTAAATACTTATTTATGTGTA-AATTTTTTCTCTCTTGGTTCTTC
452 AACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTG-AGAATTGTTTCTCTCTTGGTTCTTA
* * ** * *
15565168 GACGAACTT-TCGAACTAGGAAAACTTTTACTCTTTC-TGTTATAACTTCGATTCCTTCAAGTAT
516 GACGAACTTCT-GAACTTGTAAAACTTTTACGATTTCTTG-TATAACTTCGGTTCCTTAAAGTAT
* * ** *
15565231 TCAAGACGATCCATTTCTTCAAGCAATTTTCTAAACATTCCATGCTCGAGAAATTACATCACTTG
579 TCAAGACGATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTG
15565296 GTCT
644 GTCT
** * * *
15565300 AAATAGTTTCCCATTTCGTACACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
1 AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
* *
15565365 GTTTCTCTCTTGGTTCTTTACACGAACTT
66 ATTTCTCTCTTGGTTC-TTAGACGAACTT
15565394 ATGAAGAACA
Statistics
Matches: 5466, Mismatches: 914, Indels: 349
0.81 0.14 0.05
Matches are distributed among these distances:
637 1 0.00
638 30 0.01
639 255 0.05
640 120 0.02
641 96 0.02
642 9 0.00
643 54 0.01
644 184 0.03
645 440 0.08
646 1174 0.21
647 1688 0.31
648 743 0.14
649 655 0.12
650 14 0.00
651 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (647 bp):
AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
ATTTCTCTCTTGGTTCTTAGACGAACTTCCGAACTTGTCAACTTTTATGAGTTCTTTTATAACTT
AGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
GAAATCGCATCATTCGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA
AACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGAACCTTCGAACTTGTCAAACTT
TTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATT
TTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
ACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGA
ACTTCTGAACTTGTAAAACTTTTACGATTTCTTGTATAACTTCGGTTCCTTAAAGTATTCAAGAC
GATCCATTTCTTCGAGCAATTTTCCAAACATTCCATGCTCGAGAAATCGCATCATTTGGTCT
Found at i:15565911 original size:216 final size:213
Alignment explanation
Indices: 15565397--15575217 Score: 6240
Period size: 216 Copynumber: 45.2 Consensus size: 213
15565387 CGAACTTATG
* * * ** * * *
15565397 AAGAACACTTAAAAGTTCAACAAGTTCATAGGTTCTTACAAGAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
15565462 CATCAATAAATTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * ** * * *
15565527 TGATGCGATTTCCCGAGCATGGAATGTACGGGAAAA-CACTCGAAGGAATGGTCGTCTTGAATAC
131 TGAT-TGATTTCCTGAGCATGGAATGT-TTGAAAAATTACT-GAAGGAATGATCGTCTTGAATAC
* **
15565591 TAAATTTAAGTAATAAAAGTTATAA
193 ----TTTAAGGAACCAAAGTTATAA
* * * * * * *
15565616 AAGTACTTC-TAAATGTTTTACAAGTTCGGATGTTCGTCCAAGTACAAAGAGAGAAACAATTCCC
1 AAGAAC-TCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * *
15565680 TCATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTCACAAAATGACAAATTATTGAGGCCAG
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * *
15565745 ACGATTCGATTTCCTGAGCATAGAATGTTTGAAAATTTTCTGAATGGAACTGAACGTCTTGAATA
130 ATGATT-GATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATA
15565810 CTTTAAGGAACCAAAGTTATAA
192 CTTTAAGGAACCAAAGTTATAA
* ** * *
15565832 AAGAACTCATAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGATAA-AATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTC
* * * ** * *
15565896 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGGAAATTACAAACTAGTTAGACCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
15565961 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* * *
15566025 GCTGTAAGGAACCGAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* ** * * *
15566048 AAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTCAACAAAGAACCAAGAGAGAAACCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15566113 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAATTATTAAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
15566178 TGATGTGATTTTTCGC-GAGCATGGAATGTTCGAAAAATTAATGAAAGGAACTGATCGTCTTGAA
131 TGAT-TGA--TTTC-CTGAGCATGGAATGTTTGAAAAATTACTG-AAGGAA-TGATCGTCTTGAA
* *
15566242 TACTTTGAGGAGCCGAAA-TTATAA
190 TACTTTAAGGAACC-AAAGTTATAA
* * * * *
15566266 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAGAGAGAAGCAGTTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15566331 CATAAATAAGTTTTTAATTCAAAGACCAACAGTTGTTTACAAAATGATAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * *
15566396 TGATGAGATTT-CTGAGCATAGAATG-TTCAAAACATTACTCAAAGGAATGGATCGTCTTGAATA
131 TGAT-TGATTTCCTGAGCATGGAATGTTTGAAAA-ATTACT-GAAGGAAT-GATCGTCTTGAATA
* * * *
15566459 CTTTAGGGAAACGAAGTCATAA
192 CTTTAAGGAACCAAAGTTATAA
* * ** * *
15566481 AAGAACTCTTAAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAAAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15566546 CATCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGAAAAACTATTTAGACCAAT
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
15566611 TGA-TGCAATTTCCCGAGCATGGAATGTTCGGAAAAA-CACTTGAAGGAATGCATCGTCTTGAAT
131 TGATTG--ATTTCCTGAGCATGGAATGTT-TGAAAAATTAC-TGAAGGAATG-ATCGTCTTGAAT
* *
15566674 ACTAAATTTAAGTAA-TAGAAGTTATAA
191 AC----TTTAAGGAACCA-AAGTTATAA
* * * * * * * * **** * **
15566701 AAGTACTCGTAAATGTTTTACAAGTTCGGATGTTCTTCCAAGTACAAATA-AGTTTTTAATACAA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAG-AAACAATTCTC
* * * * * * *
15566765 AAACAAA-AACTTTTT--TACAAA-ATGAAAAA-TT-ATT----AA-GAC---C-----AGA--T
65 ACATAAATAAGTTTTTAATTCAAAGA-CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * ** * * *
15566809 GATG--CGATTTCCTAAGCATAGAATGTTCAAAAAATTTCTGAATGGAACTGAACGTCTTGAAAA
129 AATGATTGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATA
* *
15566872 CTTTAAGGAACCGAATTTATAA
192 CTTTAAGGAACCAAAGTTATAA
* ** * *
15566894 AATAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGATAA-AATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTC
* * * * ** *
15566958 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTTGAAAATTACAAACTATTTAGACCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
15567023 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15567087 GCTTTAAGGAACCAAAGTTACAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * * *
15567110 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCAAAGAACCAAGAGCGAAATC-ATTCTG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCTC
* * * * * *
15567174 ACGTAAATAGGTTTTTAATTCAAAGACCAAAATTTGTTTACAAAATGA-AAATTTATTAAGACCA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCA
* * * * * * *
15567238 AATGATGCGATTTTTCGTGAGCATGGAATGCTCGAAAAATTAATGAAAGGAACTGATCATCTTGT
129 AATGAT-TGA--TTTCCTGAGCATGGAATGTTTGAAAAATTACTG-AAGGAA-TGATCGTCTTGA
* *
15567303 ATACTTTGAGGGACCGAAA-TTATAA
189 ATACTTTAAGGAACC-AAAGTTATAA
* ** * *
15567328 AAGAACTCGTAAAAGTATGAA-AAGTTTTGAAGTTGGTCCAAGAACCAAGAGAGAATCAATTCTC
1 AAGAACTCGTAAAAGT-TTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * *
15567392 ACATAAATAAATTTTTAATTCAAAGACCAACAGTTGTTTACAAAATGATAAACTCTTTAGACCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** * * * *
15567457 ATGA-TGAGATT-CTCGAGCACAGAATG-TTCAGAAAACTGCTCGAAGGAATGGATTGTCTTGAA
130 ATGATTGA-TTTCCT-GAGCATGGAATGTTTGA-AAAATTACT-GAAGGAAT-GATCGTCTTGAA
* * * *
15567519 TACTTTAGGGAAACGAAGTGATAA
190 TACTTTAAGGAACCAAAGTTATAA
* * * ** *
15567543 AAGAACTCTTTAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
15567608 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
15567673 TGATGCGATTTCCCGAGCGTGGAATGTTAGGAAAAA-CACTCGAAGGAATGGATCATCTTGAATA
131 TGAT-TGATTTCCTGAGCATGGAATGTT-TGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATA
* * *
15567737 CTAAATTTAAGTAA-TAGAACTTATAA
192 C----TTTAAGGAACCA-AAGTTATAA
* * * * * * * *
15567763 AAGTATTCGTAAATGTTTTACAAGTTCGTATGTTCG-CCTAAGTACAAAGAGAGAAACAATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCC-AAGAACCAAGAGAGAAACAATTCTC
* * * * * *
15567827 ACGTAAATAAGTTTTTAATTTAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGGCCAG
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** ** * *
15567892 ATGATGCGATTTCCTGAGCAAAGAATGTTCAAAAAATTTA-TGAATGGAACTGAACATCTTGAAT
130 ATGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAA-TTACTGAA-GGAA-TGATCGTCTTGAAT
* *
15567956 ACTTTAAGGAATCGAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* ** * * *
15567979 AAGAACTTGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGATAA-AAATCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTC
* * * * * * * *
15568043 ACTTAAATAAGCTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACGAACTAGTTAGACC-A
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
15568107 ATGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCAAAGAAATGGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* * *
15568171 GCTTTAAGGAACCGAAGATATAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * * *
15568194 AAGATCTCGGAAAAGTTTGACATGTTCGGAAGTTTGT-CAGAGAACCAAGAGAGAAATC-ATTCT
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCA-AGAACCAAGAGAGAAA-CAATTCT
* * * * * *
15568257 GACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGAAAAATTATTAAGACCA
64 CACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * **
15568322 AATGA-TGCAATTTTTCGC-GAGCATGGAATGTTCGGAAAATTAATGAAAGGAACTAAAGGTCTT
129 AATGATTG--A--TTTC-CTGAGCATGGAATGTTTGAAAAATTACTG-AAGGAA-TGATCGTCTT
*
15568385 GAATACTTTGAGGAA-CAGAAGTTATAA
187 GAATACTTTAAGGAACCA-AAGTTATAA
* * * * * * * * *
15568412 GAGATCTCGTAAAAGTTTGACATGTTTC-GAAGTTCGTCAAAGAACCAACAGCGAAACCATTCTG
1 AAGAACTCGTAAAAGTTTAACAAG-TTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * *
15568476 ACGTAAATAAGTTTTTAATTGAAAGACCAAAACTTGTTTACAAAATGAAAAATTATTAAGACCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** * * * * * * *
15568541 ATGATGCGATTTTTTGCGACCATGGAATGCTCG-AAAATTAATGAAAGGAACTGAACGTGTTGTA
130 ATGAT-TGATTTCCT--GAGCATGGAATGTTTGAAAAATTACTG-AAGGAA-TGATCGTCTTGAA
** *
15568605 TACTTTGGGGAACCGAAGTTATAA
190 TACTTTAAGGAACCAAAGTTATAA
* * *** * * * *
15568629 AAGAACTCGTAAAA-CTTAGAAAAGTTTTAAAGTTGGTCCAAGAACCAAAACA-AAATAAATTCT
1 AAGAACTCGTAAAAGTTTA-ACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAA-CAATTCT
* * * * * *
15568692 CACATAAATAAGTTTTTAATTCTAAGACCAACAGTTGTTTACAAAATGATAAACTGTTTAGACCA
64 CACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * *
15568757 AATGATGAGATTT-CTCGAGCACAGAATG-TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGA
129 AATGAT-TGATTTCCT-GAGCATGGAATGTTTGA-AAAATTACT-GAAGGAAT-GATCGTCTTGA
* *
15568820 ATACTTTAGGGAAACAAAGTTATAA
189 ATACTTTAAGGAACCAAAGTTATAA
* * ** * * *
15568845 AAGAACTCTTAAAAGTTAAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACACTTCTAA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15568910 CGTCAATAAGTTTTTAATTTAAAGACAAAAGCTTGTTTACAAAAAGACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * *
15568975 TGATGCGATTTCCCGGGCATGGAATGTTCGGAAAAA-CACTCGAAGGAATGGATCGTCTTGAATA
131 TGAT-TGATTTCCTGAGCATGGAATGTT-TGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATA
* *
15569039 CTAAATTTAAGTAA-TAGAAGTTATAA
192 C----TTTAAGGAACCA-AAGTTATAA
* * * * * *
15569065 AAGAACTCGTAAAAGTTTGACAAGGTCGGAAGTTTGTCAAAGAACCATA-AGAGAAACCATTCTG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTC
* * * * * * *
15569129 GCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTATTTAGTCCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * ** *
15569194 AGGATGTGATTT-CTCAAG-ATGG-ATGTTAGAAAAATTTCAC-AAAGAAATGGATCACCTTGAT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAA-TT-ACTGAAGGAAT-GATCGTCTTGAA
*
15569255 TACTTTAAGGAACCGAAGTTATAA
190 TACTTTAAGGAACCAAAGTTATAA
* * * * **
15569279 AAGAACTCGTAAAAGTTTGACTAGTTCGG-A-TTCGTCAAAGAACCAAGAGAGAAACTATTCTGG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15569342 CGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAAAAAATGA-AAACTTTTTAAGGCCAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTT-AGACCAA
* * ** **
15569406 CTGACGTGATTTTTCGGGAGCATGGAATGTTAAAAAAATTTA-TGAAAGGAACTGATCGTCTTGA
130 ATGA-TTGA--TTTCCTGAGCATGGAATGTTTGAAAAA-TTACTG-AAGGAA-TGATCGTCTTGA
*
15569470 ATACTTTGAGGAACCGAAA-TTATAA
189 ATACTTTAAGGAACC-AAAGTTATAA
* * * * *
15569495 AAGAACTCGTAAAAGTTTCACAAGTTTGGATGTTAGTCCAAGAACCAAGGGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15569560 CATAAATAAGTTTTTAATTAAAAGACAAACAGTTGTTTACAAAATGATAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * ** * ** * * **
15569625 TGATGAGATTTCCCGAACACAGAATGCTCAAAAAATTGCTCGAAGGAATGGATAGTCTCAAATAC
131 TGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATAC
* * *
15569690 TTTAGGGAAACGAAGTTATAA
193 TTTAAGGAACCAAAGTTATAA
* ** * *
15569711 AAGAACTCTTAAAAGTTTAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGGGAAAC-ATGTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAAT-TCTC
* * * *
15569775 ACATCAATAAGTTTTTAACTCAAAGACCAAAATCTTGTTTACAAAATAACAAACTATTTAGACCA
65 ACATAAATAAGTTTTTAATTCAAAGA-CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
15569840 AAAGATGTGATTTCCCGAGCATGGAATGTTCGGAAAAA-CACTCGAAGGAATGGATCATCTTGAA
129 AATGAT-TGATTTCCTGAGCATGGAATGTT-TGAAAAATTACT-GAAGGAAT-GATCGTCTTGAA
* *
15569904 TACTAAATTTAAGTAA-TAGAAGTTATAA
190 TAC----TTTAAGGAACCA-AAGTTATAA
* * * * * * ** * *
15569932 CAGTACTCGTAAAGGTTTTACAAGTTCGGATGTTCATCCAACTACAAAGAGAGAAACAATTCTAA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * * *
15569997 CATAAATAA-CTTTTAATTCAAAGACAAAAACTTGTTCATAAAATGATAAATTATTAAGGCCAGA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** * * ** * *
15570061 TGATGCGATTTCCTGAGCATACAATGTTCGAAAATTTTTTGAATGGAACTAAACGTCTTGAATAC
131 TGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATAC
*
15570126 TTTAAGGAACCGAAGTTATAA
193 TTTAAGGAACCAAAGTTATAA
* * *
15570147 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGATAA-AATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA-AACAATTCTC
* * * * * *
15570211 ACGTAAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTATTTAGACCAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
15570276 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTTGAAGAAATGGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTAC-TGAAGGAAT-GATCGTCTTGAAT
** *
15570340 GTTTTAAGGAACCGAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * * * **
15570363 AAGAACTCGTAAAAGTTTCACGAGTTCGGAAGTTCGTCGAAGAACAAAGAGAGAAACAATTTTGG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15570428 CATAAATAAGTTTTTAATTCAAAGACCAAAATTTGTTTAGAAAATTACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * * *
15570493 GGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTTCTCAAGGAAATGGATCATCTTGATTG
131 TGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACTGAAGG-AAT-GATCGTCTTGAATA
* * *
15570557 CTGTAAGGAACCGAAGTTACAA
192 CTTTAAGGAACCAAAGTTATAA
* * * * *
15570579 AAGAACTCGTAAAAGTTTGACTAGTTCGGAAGTTCGTCAAAGAA-CAAGGAGAGAAACCATTCTG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAA-GAGAGAAACAATTCTC
* * * *
15570643 GCATAAATAAGTTTTTAATTCAAAGATC-AAAAGTTGTTTAGAAAATTACAAACTATTTAGACCA
65 ACATAAATAAGTTTTTAATTCAAAGA-CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCA
* * * ** * **
15570707 AAGGATGTGATTT-CTCGAGCATGGAATG-TTAAAAAACTTGCTCTTAGAAATGGATAATCTTGA
129 AATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAA-TTACT-GAAGGAAT-GATCGTCTTGA
* * * * *
15570770 TTGCTTTAAGGCACCGAAGCTATAA
189 ATACTTTAAGGAACCAAAGTTATAA
* * * * **
15570795 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGAACCAAGAGAGAAACCATTCTGG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
15570860 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTAGTTTAGAAAATTACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * *
15570925 GGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATT-CTCGAAGAAATGGATCATCTTGATTG
131 TGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATA
* * *
15570988 CCTTAAGGAACCGATGTTATAA
192 CTTTAAGGAACCAAAGTTATAA
* * * * * **
15571010 AAGAAGTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAAAAACCATTCTGG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * ** * * *
15571075 CGTAAATAAGATTTTAATTCGAAGACCAAAAGGTGTTTAGAAAATTACAAACTATTTAAACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * * * * *
15571140 AGATGTGATTT-CTCGAGCATGGAGTATTAGAAAAATTGCTTTAAGAAATGGATCATCTTGATTA
131 TGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTAC-TGAAGGAAT-GATCGTCTTGAATA
* *
15571204 CTTTAAGGTACCGAAGTTATAA
192 CTTTAAGGAACCAAAGTTATAA
* * * * * * * *
15571226 AAGAACTCATAAAAGTTTGAC-TGTTCGTAAGTTCGTCAAAGGACCAAGAGAGAAACCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15571290 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACCATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * * * *
15571355 GGATGTGATTT-CTCGAGCATGGAGTGTTAGAAAAATTTCT-AAGAAATGGATCATCTTGATTGC
131 TGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACTGAAGGAAT-GATCGTCTTGAATAC
15571418 TTTAAGGAACCAAAGTTATAA
193 TTTAAGGAACCAAAGTTATAA
* * * * * * **
15571439 AAGAACTTGTAAAAGTTTGACAAGTTCGGAAGTTGGTCAAAGAACCAAGAGAAAAACCATTCTGG
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * * *
15571504 CGTAAATAAGTTTTTAATTGC-AAGGCCAAAAGTTGTTTAGAAAATTAAAAACTATTTAAACCAA
66 CATAAATAAGTTTTTAATT-CAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
15571568 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15571632 GCTTTAAGAAACCAAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * * * * *
15571655 AAGAACTCGTAAAAGTTTGACTAGTTCGGAAGTTTGTCAAAGAACCAAGGGAGAAACCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
** * * *
15571720 TGTAAATAAGTTTTTAATTCAAAGACCAAAAA-TTATTTAGAAAATTACAAACTATTTAGACCAA
66 CATAAATAAGTTTTTAATTCAAAGA-CAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * * * *
15571784 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAGTTGCTTAAAGAAATAGATCATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTAC-TGAAGGAAT-GATCGTCTTGAAT
* *
15571848 GCTTTAAGGAACCGAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * * * * * * *
15571871 AATAACTTGCAAAAGTTTGACAAGTTCGGAAGTTTGTCAAAGAACCAAGAGAGAAGCCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
15571936 CATAAATAAGTTTTTAATTCAAAGAAAAAAATTTGTTTACAAAATGAAAAATTTGTTTA-A-GAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAA-CTATTTAGACCAA
* *
15571999 ATGCGATT--TTTCGC-GAGCATGGAATGTTCGAAAAATTAATGAAAGGAATCGATCGTCTTGAA
130 AT--GATTGATTTC-CTGAGCATGGAATGTTTGAAAAATTACTG-AAGGAAT-GATCGTCTTGAA
* *
15572061 TAGTTTGAGGAACCGAAA-TTATAA
190 TACTTTAAGGAACC-AAAGTTATAA
* * * *
15572085 AAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGACCCAAGAGCA-AAACAATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAG-AGAAACAATTCTC
* * * * * *
15572149 ACATAAATAAGTTTTTGATTCAAAGACCAACACTTGTTTACAAAATGATAAACTGTTTAGACTAA
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * ** * *
15572214 ATGATGAGATTTCCCGAGCA-CAACATG-TTCAGAAAATTGCTCGAAGGAATGGATCGTCTTGAA
130 ATGAT-TGATTTCCTGAGCATGGA-ATGTTTGA-AAAATTACT-GAAGGAAT-GATCGTCTTGAA
* * *
15572277 TGCTTTAGGGAAACAAAGTTATAA
190 TACTTTAAGGAACCAAAGTTATAA
* * ****
15572301 AAGAACTCTTAAAAGTTAAACAAGTTCATTGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15572366 CGTCAACAAGTTTTTAATTCAAAGACAAAATCCTGTTTACAAAATGACAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
15572431 TGA-TGCAATTTCCTGAGCATGGAATGTTCAGAAAAA-CACTCGAAGGAATGGATCGTCTTGAAT
131 TGATTG--ATTTCCTGAGCATGGAATGTT-TGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15572494 ACTAAATTTAAGTAA-TAGAAGTTATAA
191 AC----TTTAAGGAACCA-AAGTTATAA
* * * * * *
15572521 AAGTACTCGTAAATGTTTTACAAGTTCGGATGTTCGTCCAAGTACAAAGAGTGAAGGAAA-AACT
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGA--G-A-GAAACAA-T
* ** * * ** * * ** ** * * *
15572585 TGT-TTATAAAAGAACTCTTAAAAGTTCAACAAGTTC-ATAGGTTCGTCCAAGAACGAAGAGAGA
61 TCTCACAT-AAATAAGT-TTTTAA-TTC-A-AAG-ACAAAAACTT-GT-TTACAA--AA-TGACA
* * * * ** * ** * *
15572648 AACAACTCTCATGTCAATAAGTTTTTCA-TT-CAAAGACA--AAATCTTGTTT-ACAAAATGAC-
115 AACTA-T-TTA-GACCA-AA-TGATTGATTTCCTGAG-CATGGAA---TGTTTGA-AAAATTACT
* ** * * *** * *** * **
15572707 AAACTATTTAGACCAAATATGCA-A-TTTCCCG-AGCATGGAATGTTCGGAA
170 GAAGGA-AT-GATCGTCT-TGAATACTTTAAGGAACCA---AA-GTT-ATAA
* ** * * * * ** ** * * ** * *
15572756 AA-ACACTTG-AAGGAA-TGGATC--GTCTTGAATACTTTAT-GTAGTA-GAAGTTATAAA-AGT
1 AAGA-ACTCGTAA--AAGTTTAACAAGT-TCGGA-AGTTCGTCCAAGAACCAAGAGAGAAACAAT
* *** * * * *
15572813 ACT--CATAAATGTTTTACAAGTTTGGATGTTCGTCCAAGTACAAAGAGTGAAGCAATTCTCACA
61 TCTCACATAAA-----T--AAGTTT---T-TAATTCAAAG-ACAAAAACT--TG---TT-T-ACA
* ***** * * * * * * *
15572876 TAAATAAGTTTTTAATTCAAAGA-CAAA-AACTTG-TTTACATAATGACAAATTATGAAGGCCAG
107 -AAATGACAAACT-ATT--TAGACCAAATGA-TTGATTT-CCTGA-G-C--A-T-GGAATG---T
* * * * * * * * *
15572938 ATGATTTAATTTCCTG-A-GCATAGAAT-GT-TCGAAAAATTTCTGAATGGAACTAAACGTCTTG
157 TTGA--AAAATTACTGAAGGAAT-G-ATCGTCTTG-AATACTT-T-AA-GGAACCAAA-G--TT-
15572999 AATACTTA
210 -ATA---A
* * *
15573007 AAGGAGC-CGAAGTTATAAAATAACTCGTAA-AAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAAC
1 AA-GAACTC---G-TA-AAAGT---T--TAACAAG-TT--C------GGAAGTTCGTCCAAGAAC
* * * * *
15573070 CAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
46 CAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAAT
* * * * *
15573135 TACAAAGTATTTAGACCAAAGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAA
111 GACAAACTATTTAGACCAAATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAA
* * * * *
15573199 GAAATGGAACATCTTGATTGCTTTAAGGAACCAAAGTTATAA
173 GGAAT-GATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* ** ** * *
15573241 AAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCGTGAAAGAACCAAGAGAGAAACCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15573306 CATATATAAGTTTTTAATTCAAAAACAAAATCTTGTTTACAAAATGAAAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* ** **
15573371 TGA-TGCAATTT-CTCGGGCATGGAATGTTCAAAAAAACACTCGAAGGAATGGATCGTCTTGAAT
131 TGATTG--ATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15573434 ACTTTAAGTAA-TAGAAGTTATAA
191 ACTTTAAGGAACCA-AAGTTATAA
* ** * * * *
15573457 AAGTACTCGTAATTGTTTTACAAGTTCGGATGTTCGTCCAAGTAA-AAAGGGAGAAACAATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTC
* * * * * * * * *
15573521 ACATAAATAACTTTTTAATTCAATGATAAAAACTTGTTTACAAAATGGCAAATTGTTAAGGCCAG
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * ** * *
15573586 ATGATGCGATTTCCTGAGCATAGAATGTTCGAAAACTTTTTGAATGGAACTAAACGTCTTGAATA
130 ATGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATA
* ** *
15573651 CTATAAGGAACTGAAGTTGTAA
192 CTTTAAGGAACCAAAGTTATAA
* ** * **
15573673 AAGAACTCGTAATAGTTTGGCAAGTTTGGAAGTTTTTCCAAGAACCAAGAGAG-AA-AATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * *
15573736 TGA-AAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTAGAAAATTACAAAGTATTTAGACCAA
66 -CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * * *
15573800 AGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGAACATCTTGATT
130 ATGAT-TGATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
*
15573864 GCTTTAAGGAACCAAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* ** ** * *
15573887 AAGAACTCGTAAAAGTTTGACAAGTTTAGAAGTTCGTGAAAGAACCAAGAGAGAAACCATTCTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * *
15573952 CATATATAAGTTTTTAATTCAAAAACAAAATCTTGTTTACAAAATGAAAAACTATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
** **
15574017 TGA-TGCAATTT-CTCGAGCATGGAATGTTCAAAAAAACACTCGAAGGAATGGATCGTCTTGAAT
131 TGATTG--ATTTCCT-GAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15574080 ACTTTAAGTAA-TAGAAGTTATAA
191 ACTTTAAGGAACCA-AAGTTATAA
* ** * * * *
15574103 AAGTACTCGTAATTGTTTTACAAGTTCGGATGTTCGTCCAAGTAA-AAAGGGAGAAACAATTCTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTC
** ** * * * * * * *
15574167 ACATAAATAACCTTTTAATTCATTGATAAAAACTTGTTTACAAAATGGCAAATTGTTAAGGCCAG
65 ACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * ** * *
15574232 ATGATGCGATTTCCTGAGCATAGAATGTTCGAAAACTTTTTGAATGGAACTAAACGTCTTGAATA
130 ATGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATA
* ** *
15574297 CTGTAAGGAACTGAAGTTGTAA
192 CTTTAAGGAACCAAAGTTATAA
** * *
15574319 AAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAA-AATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * * *
15574383 TGA-AAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTAGAAAATTACAAAATATTTTGACCAA
66 -CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAA
* ** ** * * * * * * *
15574447 AGGATGTTTTTTTATTAAGCATGGAATGTTAGAAAATTTGCTCGAAGAAATGGATCATCTTGATT
130 ATGA--TTGATTTCCTGAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAAT
* *
15574512 GCTTTAAGGAACCGAAGTTATAA
191 ACTTTAAGGAACCAAAGTTATAA
* * * *
15574535 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGCCCAAGAACCAAGATAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * *
15574600 CATAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * * * * *
15574665 TGA-TGCAATTTCCCGAGCATAGATTGGTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATA
131 TGATTG--ATTTCCTGAGCATGGAATGTTTGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATA
15574729 CTTTAAGGAACCAAAGTTATGAA
192 CTTTAAGGAACCAAAGTTAT-AA
* * * * * *
15574752 AAGAACCCGTAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAAGCAAGAGAGAAACAATTCTCA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * *
15574817 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTATAAAATGACAAAATATTTAGACCAAA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * * *
15574882 TGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAA--CCTCGAAGGAATGGATCATCTTGAATA
131 TGAT-TGATTTCCTGAGCATGGAATGTT-TGAAAAATTACT-GAAGGAAT-GATCGTCTTGAATA
* * *
15574945 CTTTAAGTAA-TAGATGTTATAA
192 CTTTAAGGAACCA-AAGTTATAA
* * * * * * * * * * *
15574967 AAGTACTCGTAAATGTTTTACTAGTTTGGATGTTCATCCAAGTACAAAGAGAGAAACAATACTGA
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * *
15575032 CATAAATAAGCTTTTAATTTAAAGACAAAAACATGTTTACAAAATGACAAATTATTAAGGCCAGA
66 CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * * ** * * *
15575097 TGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTGTTGAATGGAACTAAGCGCCTTGAATAC
131 TGAT-TGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAA-GGAA-TGATCGTCTTGAATAC
*
15575162 TTTAAGGAACCGAAGTTATAA
193 TTTAAGGAACCAAAGTTATAA
**
15575183 AAGAACTCGTAAAAGTTTGGCAAGTTCGGAAGTTC
1 AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTC
15575218 AAAGAAATGG
Statistics
Matches: 7665, Mismatches: 1511, Indels: 855
0.76 0.15 0.09
Matches are distributed among these distances:
193 62 0.01
194 9 0.00
196 18 0.00
197 38 0.00
198 4 0.00
199 1 0.00
200 2 0.00
202 5 0.00
203 2 0.00
206 1 0.00
207 1 0.00
210 2 0.00
211 14 0.00
212 84 0.01
213 77 0.01
214 545 0.07
215 1197 0.16
216 3235 0.42
217 543 0.07
218 670 0.09
219 258 0.03
220 448 0.06
221 75 0.01
222 3 0.00
223 4 0.00
224 16 0.00
225 7 0.00
226 7 0.00
227 3 0.00
228 8 0.00
229 11 0.00
230 7 0.00
231 5 0.00
232 4 0.00
233 26 0.00
234 26 0.00
235 27 0.00
236 22 0.00
237 22 0.00
238 6 0.00
239 6 0.00
240 2 0.00
241 2 0.00
242 16 0.00
243 10 0.00
244 9 0.00
245 16 0.00
246 2 0.00
247 7 0.00
248 4 0.00
249 1 0.00
251 7 0.00
252 8 0.00
253 8 0.00
254 10 0.00
255 4 0.00
256 3 0.00
257 3 0.00
260 1 0.00
261 1 0.00
262 9 0.00
263 7 0.00
264 1 0.00
267 6 0.00
269 6 0.00
270 5 0.00
271 7 0.00
272 4 0.00
274 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (213 bp):
AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATTGATTTCCTGAGCATGGAATGTTTGAAAAATTACTGAAGGAATGATCGTCTTGAATACTTT
AAGGAACCAAAGTTATAA
Found at i:15575765 original size:210 final size:207
Alignment explanation
Indices: 15575244--15576069 Score: 625
Period size: 210 Copynumber: 3.9 Consensus size: 207
15575234 TTGCTTGCTT
* * * *
15575244 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCCGAAGTTCCTCAAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCATAAAAG-TTAACAAGTTCAGAAGTTCTTCCAAGAACC
* * *
15575309 AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAA-A
65 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATA
* * * * * *
15575372 AGAAATGTTATTAGAGCAAATGAAGCGATTTTTCGTGAGCATGGAATGTTCGGAAAATTAATGAA
130 AGAAA-G-T-TTAGACCAAATGATGCGATTTCTC--GAGCATGGAATGTTCGAAAAATTACTCAA
* *
15575437 AGGAACT-GAACGTCTTGAA
190 A-GAAATGGATCGTCTT-AA
* * **
15575456 TACTTTGAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTTACAAGTTTGGAAGTT-TGTCCA
1 TA-----AGGAACCGAAGTTATAAAAGAACTCATAAAAG-TTAACAAGTTCAGAAGTTCT-TCCA
* * * * * *
15575520 AGAACCAAAAGAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAATACCAAAAGTTGTTTAC
59 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * * *
15575585 AAAATAATGAACAGTTCAGACCAAATGATGCAATTTCTCGAGCATAGATTGTTCGAAAAATTGCT
124 AAAATAA-GAA-AGTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTACT
15575650 CAAAGAAATGGATCGTCTT-A
187 CAAAGAAATGGATCGTCTTAA
* * * *
15575670 TAAGGAACCAAAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCTTCCAGGAAC
1 TAAGGAACCGAAGTTAT-AAAAGAACTCATAAAAGTT-AACAAGTTCAGAAGTTCTTCCAAGAAC
* *
15575735 CAAGAGATAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAATCTTGTTTACAAAA
64 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAA
* * * * *
15575799 TGACA-AAATATTTAGACCAAATGATGCGATTTCCCGAGCTTGGAATGTTC-AAAAA-AACCTCG
128 T-A-AGAAA-GTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTA-CTCA
*
15575861 AAGGAATGGATCGTCTTGAATA
189 AAGAAATGGATCGTCTT--A-A
* ** * * * * * ** * *
15575883 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTCTACAAGTTCGGCTGTTCATCCAAGT
1 ---TAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTT-AACAAGTTCAGAAGTTCTTCCAAGA
* * * * * * * * * *
15575948 ACAAAGAGAGTAAC-ATTACTGACATAAATAAGCTTTTACTTTAAAGACAAAAACATGTTTGCAA
62 ACCAAGAGAGAAACAATT-CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * *
15576012 AATAA-ATTA-TTAAGGCCAGATGATGCGATTTC-CTGAGCATAGAATATTCGAAAAATTA
126 AATAAGA-AAGTTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTA
15576070 TTGAATGGAA
Statistics
Matches: 491, Mismatches: 91, Indels: 62
0.76 0.14 0.10
Matches are distributed among these distances:
209 45 0.09
210 123 0.25
211 3 0.01
212 35 0.07
213 8 0.02
214 9 0.02
215 84 0.17
216 49 0.10
217 105 0.21
218 22 0.04
219 3 0.01
220 4 0.01
221 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (207 bp):
TAAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTAACAAGTTCAGAAGTTCTTCCAAGAACCA
AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATAA
GAAAGTTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTACTCAAAGAAAT
GGATCGTCTTAA
Found at i:15577015 original size:433 final size:433
Alignment explanation
Indices: 15576176--15577015 Score: 925
Period size: 433 Copynumber: 1.9 Consensus size: 433
15576166 ATCTTGCTTG
* * * **
15576176 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCATAAA
1 CTTTAAGGAACCAAAACTATAAAAGAACTCATAAAAGTTCAACAAGTTCGAAAGTTCATCATAAA
* * * *
15576241 ACCAAGAGAGAAACCATTTTGATGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAA
* ** * *
15576306 AATGAAAAGTTATTAGACCAAATGAAGCGATTTTTTGCGAGTATGGAATGTTCGAAAAATTAATG
131 AATGAAAACTTATTAGACCAAATGAAGCGATTTCCT-CGAGCATGGAATGTTCGAAAAATCAATG
* * * *
15576371 AAAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAATTTTTTA
195 AAAGGAACTGAACATCTTGAATACTCTGAGGAACAGAAGTTATAAAAGAACTCATAAATGTTTTA
* * * * *
15576436 CAAGTTTTGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTATTTC
260 CAAGTTTCGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTC
* * * * * *
15576501 AAATACCAAAAGTTGTTTACAATATAATAAACTGTCCAAACCAAATGATGCAATTTCTCGAGCAT
325 AAAAACAAAAACTTGTTTACAAAATAACAAACTATCCAAACCAAATGATGCAATTTCTCGAGCAT
*
15576566 AGATCGTTCTAAAAATTGCTCAAAGAAATGGATTGCCTTGAATA
390 AGATCGTTCAAAAAATTGCTCAAAGAAATGGATTGCCTTGAATA
* * *
15576610 CTTTAAGGAACCAAAATTATGAATAGAACTCATAAAAGTTCAACAAGTTC-AGAGGTTCATCCA-
1 CTTTAAGGAACCAAAACTAT-AAAAGAACTCATAAAAGTTCAACAAGTTCGA-AAGTTCAT-CAT
* * *
15576673 AGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAATCTTGTTTA
63 AAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAA-CTTGTTTA
* *
15576737 C-AAAATGACAAAC-TATTTAGACCAAATGATGCGATTTCCT-GAGCGTGGAATGTTCAGAAAAA
127 CAAAAATGA-AAACTTA-TTAGACCAAATGAAGCGATTTCCTCGAGCATGGAATGTTC-GAAAAA
* ** * * * * * *
15576799 -CACTTG-AATTAA-TGGATCATCTTGAATACTCT-ATGTAATAGAAGTTATAAATGTACTCGTA
189 TCA-ATGAAAGGAACT-GAACATCTTGAATACTCTGA-GGAACAGAAGTTATAAAAGAACTCATA
* * * * *
15576860 AATGTTTTACAAGTTTCGATGTTCATCCAAGTAA-AAAGAGAGAACCATTTCTTACATAAATAAG
251 AATGTTTTACAAGTTTCGAAGTTCATCCAAG-AACAAAGAGAGAAACAATTCTCACATAAAAAAG
* * * * **
15576924 TTTTTAATTCAAAAACAAAAACTTGTTTACAAAATGACAAATTAT-TAAGGCCTGATGATGCAAT
315 TTTTTAATTCAAAAACAAAAACTTGTTTACAAAATAACAAACTATCCAA-ACCAAATGATGCAAT
15576988 TTC-CTGAGCATAGAAT-GTTCAAAAAATT
379 TTCTC-GAGCATAG-ATCGTTCAAAAAATT
15577016 TCTTCATGGA
Statistics
Matches: 334, Mismatches: 58, Indels: 29
0.79 0.14 0.07
Matches are distributed among these distances:
432 5 0.01
433 175 0.52
434 44 0.13
435 108 0.32
436 2 0.01
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (433 bp):
CTTTAAGGAACCAAAACTATAAAAGAACTCATAAAAGTTCAACAAGTTCGAAAGTTCATCATAAA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAA
AATGAAAACTTATTAGACCAAATGAAGCGATTTCCTCGAGCATGGAATGTTCGAAAAATCAATGA
AAGGAACTGAACATCTTGAATACTCTGAGGAACAGAAGTTATAAAAGAACTCATAAATGTTTTAC
AAGTTTCGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTAATTCA
AAAACAAAAACTTGTTTACAAAATAACAAACTATCCAAACCAAATGATGCAATTTCTCGAGCATA
GATCGTTCAAAAAATTGCTCAAAGAAATGGATTGCCTTGAATA
Found at i:15577040 original size:216 final size:218
Alignment explanation
Indices: 15576176--15577082 Score: 772
Period size: 216 Copynumber: 4.2 Consensus size: 218
15576166 ATCTTGCTTG
* * * * *
15576176 CTTTAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAAGTTCAT-CATA
1 CTTTATGGAACAGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTCG-AAGTTCATCCA-A
* * * * ** *
15576239 AAACCAAGAGAGAAACCATTTTGATGTAAATAAGTTTTTAATT-AAAAGACCAAAACTTGTTTAC
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAA-ACAAAAACTTGTTTAC
* * * ** * * *
15576303 AAAAATGA-AAAGTTATT-AGACCAAATGAAGCGATTTTTTGCGAGTATGGAATGTTCGAAAAAT
128 -AAAATGACAAA-CTATTAAGACCAAATGATGCAATTTCCT-CGAGCATAGAATGTTCAAAAAAT
* *
15576366 TAATGAAAGGAACT-GAACGTCTTGAATA
190 TACTTAAAGGAACTGGAACGTCTTGAATA
* ** * * *
15576394 CTTTGA-GGAACCGAAGTTATAAAAGAACTCATAAATTTTTTACAAGTTTTGAAGTTCGTCTAAG
1 CTTT-ATGGAACAGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTCGAAGTTCATCCAAG
* * * * *
15576458 AACCAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTATTTCAAATACCAAAAGTTGTTTACAA
65 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAA
* * * * * * *
15576523 TATAATAAACTGTCCAA-ACCAAATGATGCAATTT-CTCGAGCATAG-ATCGTTCTAAAAATTGC
130 AATGACAAACTAT-TAAGACCAAATGATGCAATTTCCTCGAGCATAGAAT-GTTCAAAAAATTAC
* * ** *
15576585 TCAAA-GAAATGGATTGCCTTGAATA
193 TTAAAGGAACTGGAACGTCTTGAATA
* * * ** *
15576610 CTTTAAGGAACCA-AAATTATGAATAGAACTCATAAAAGTTCAACAAG-TTCAGAGGTTCATCCA
1 CTTTATGGAA-CAGAAGTTAT-AAAAGAACTCATAAAAGTTTTACAAGTTTC-GAAGTTCATCCA
* * * *
15576673 AGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTAC
63 AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTAC
* * * * *
15576738 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCCT-GAGCGTGGAATGTTCAGAAAAA-CA
128 AAAATGACAAACTATTAAGACCAAATGATGCAATTTCCTCGAGCATAGAATGTTCA-AAAAATTA
* ** * *
15576801 CTTGAATTAA-TGGATCATCTTGAATA
192 CTTAAAGGAACTGGAACGTCTTGAATA
* * * * * * * *
15576827 CTCTATGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGT
1 CTTTATGGAACAGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTCGAAGTTCATCCAAG-
* * * *
15576892 AA-AAAGAGAGAACCATTTCTTACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAA
65 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAA
* * ** *
15576956 AATGACAAATTATTAAGGCCTGATGATGCAATTTCCT-GAGCATAGAATGTTCAAAAAATTTCTT
130 AATGACAAACTATTAAGACCAAATGATGCAATTTCCTCGAGCATAGAATGTTCAAAAAATTACTT
* *
15577020 CATGGAACT-GAACGTCTTGAATA
195 AAAGGAACTGGAACGTCTTGAATA
* * *
15577043 ATTTATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT
1 CTTTATGGAACAGAAGTTATAAAAGAACTCATAAAAGTTT
15577083 GGCAAGTCTG
Statistics
Matches: 548, Mismatches: 118, Indels: 48
0.77 0.17 0.07
Matches are distributed among these distances:
215 12 0.02
216 232 0.42
217 169 0.31
218 126 0.23
219 9 0.02
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.29
Consensus pattern (218 bp):
CTTTATGGAACAGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTCGAAGTTCATCCAAGA
ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAA
ATGACAAACTATTAAGACCAAATGATGCAATTTCCTCGAGCATAGAATGTTCAAAAAATTACTTA
AAGGAACTGGAACGTCTTGAATA
Found at i:15577529 original size:944 final size:944
Alignment explanation
Indices: 15574300--15578036 Score: 5537
Period size: 944 Copynumber: 4.0 Consensus size: 944
15574290 TTGAATACTG
* * ** * ** *
15574300 TAAGGAACTGAAGTTGTAAAAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGAACC
* * * * * * *
15574365 AAGAGAGAAA-AATTCTCATGAAAATAAGTTTTTAATTCAATGACCAAAAGTTGTTTAGAAAATT
66 AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * * ** * * **
15574429 ACAAA-ATATTTTGACCAAAGGATG-TTTTTTTATTA-AGCATGGAATGTTAGAAAATTTGCTCG
131 A-AAAGTTA-TTAGACCAAATGAAGCGATTTTT-TGAGAGCATGGAATGTTCGAAAA-TTAAT-G
* * * * * * *
15574491 -AA-GAAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
191 AAAGGAACT-GAACATCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTT
* *
15574554 ACAAGTTTGGAAGTTCGCCCAAGAACCAAGATAGAAACAATTCTCACATAAATAAGTTTTTAATT
255 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT-ATT
* * *
15574619 T-AAAGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGC
319 TCAAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGC
*
15574683 ATAGATTGGTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
384 ATAGATTGTTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA
* * * *
15574748 TGAAAAGAACCCGTAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAAGCAAGAGAGAAACAATT
449 TGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATT
*
15574813 CTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTATAAAATGACAAAATATTTAGAC
514 CTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGAC
15574878 CAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAACCTCGAAGGAATGGATCATCTTGAA
579 CAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAACCTCGAAGGAATGGATCATCTTGAA
* * * *
15574943 TACTTTAAGTAATAGATGTTATAAAAGTACTCGTAAATGTTTTACTAGTTTGGATGTTCATCCAA
644 TACTCTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAA
* * * *
15575008 GTACAAAGAGAGAAACAATACTGACATAAATAAGCTTTTAATTTAAAGACAAAAACATGTTTACA
709 GTAAAAAGAGAGAAACATTACTGACATAAATAAGCTTTTAATTCAAAAACAAAAACATGTTTACA
*
15575073 AAATGACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTGTTG
774 AAATGACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTATTG
*
15575138 AATGGAACT-AAGCGCCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
839 AATGGAACTGAA-CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTG
15575202 GCAAGTTCGGAAGTTCAAAGAAATGGATCATCTTGCTTGCTT
903 GCAAGTTCGGAAGTTCAAAGAAATGGATCATCTTGCTTGCTT
*
15575244 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCCGAAGTTCCTCAAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGAACC
*
15575309 AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAAAG
66 AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
* * * *
15575374 AAATGTTATTAGAGCAAATGAAGCGATTTTTCGTGAGCATGGAATGTTCGGAAAATTAATGAAAG
131 AAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTC-GAAAATTAATGAAAG
* * *
15575439 GAACTGAACGTCTTGAATACTTTGAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTTACAAG
195 GAACTGAACATCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAG
* * *
15575504 TTTGGAAGTTTGTCCAAGAACCAAAAGAGAAACAATTCTTACATAAATAAGTTTTTATTTCAAAT
260 TTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAAT
* *
15575569 ACCAAAAGTTGTTTACAAAATAATGAACAGTTCAGACCAAATGATGCAATTTCTCGAGCATAGAT
325 ACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAGAT
15575634 TGTTCGAAAAATTGCTCAAAGAAATGGATCGTC-T---TA---TAAGGAACCAAAGTTATGAATA
390 TGTTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAATA
* * *
15575692 GAACTCATAAAAGTTCAACAAGTTCAGAGGTTCTTCCAGGAACCAAGAGATAAACAATTCTCACG
455 GAACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
15575757 TCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGACCAAATG
520 TCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGACCAAATG
* * * *
15575822 ATGCGATTTCCCGAGCTTGGAATGTTCAAAAAAACCTCGAAGGAATGGATCGTCTTGAATACTTT
585 ATGCGATTTCCCGAGCATGGAATGTTCAGAAAAACCTCGAAGGAATGGATCATCTTGAATACTCT
* * *
15575887 AAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTCTACAAG-TTCGGCTGTTCATCCAAGTACA
650 AAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTC-GATGTTCATCCAAGTAAA
* * * * *
15575951 AAGAGAGTAACATTACTGACATAAATAAGCTTTTACTTTAAAGACAAAAACATGTTTGCAAAAT-
714 AAGAGAGAAACATTACTGACATAAATAAGCTTTTAATTCAAAAACAAAAACATGTTTACAAAATG
*
15576015 --AAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATATTCGAAAAATTATTGAATGG
779 ACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTATTGAATGG
**
15576078 AACTGAACGTCTTGAATACTTTAAGGAAATGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGT
844 AACTGAACGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGT
* *
15576143 TCGAAAGTTCGAAGAAATGGATCATCTTGCTTGCTT
909 TCGGAAGTTCAAAGAAATGGATCATCTTGCTTGCTT
* * * *
15576179 TAAGGAACCGAAGCTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCATAA-AAC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCA-AAGAAC
* *
15576243 CAAGAGAGAAACCATTTTGATGTAAATAAGTTTTTAATTAAAAGACCAAAACTTGTTTACAAAAA
65 CAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC-AAAA
* *
15576308 TGAAAAGTTATTAGACCAAATGAAGCGATTTTTTGCGAGTATGGAATGTTCGAAAAATTAATGAA
129 TGAAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCG-AAAATTAATGAA
* **
15576373 AGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAATTTTTTACA
193 AGGAACTGAACATCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACA
* * *
15576438 AGTTTTGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTATTTCAA
258 AGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAA
* * *
15576503 ATACCAAAAGTTGTTTACAATATAATAAACTGTCCAAACCAAATGATGCAATTTCTCGAGCATAG
323 ATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAG
* * * * *
15576568 ATCGTTCTAAAAATTGCTCAAAGAAATGGATTGCCTTGAATACTTTAAGGAACCAAAATTATGAA
388 ATTGTTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAA
15576633 TAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
453 TAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCA
*
15576698 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
518 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGACCAAA
* * * **
15576763 TGATGCGATTTCCTGAGCGTGGAATGTTCAGAAAAACACTTGAATTAATGGATCATCTTGAATAC
583 TGATGCGATTTCCCGAGCATGGAATGTTCAGAAAAAC-CTCGAAGGAATGGATCATCTTGAATAC
* *
15576828 TCTATGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTA
647 TCTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTA
* * * * *
15576893 AAAAGAGAGAACCATTTCTTACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAAA
712 AAAAGAGAGAAACATTACTGACATAAATAAGCTTTTAATTCAAAAACAAAAACATGTTTACAAAA
* * * **
15576958 TGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCAAAAAATT-TCTTCA
777 TGACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTAT-TGAA
* *
15577022 TGGAACTGAACGTCTTGAATAATTTATGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCA
841 TGGAACTGAACGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCA
*
15577087 AG-TCTGGAAGTTTAAAGAAATGGATCATCTTGCTTGCTT
906 AGTTC-GGAAGTTCAAAGAAATGGATCATCTTGCTTGCTT
*
15577126 TAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGAACC
1 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGAACC
*
15577191 AAGAGAGAAACCATTATGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
66 AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
*
15577256 AAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCGGAAATTAATGAAAGG
131 AAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCGAAAATTAATGAAAGG
* * * * * *
15577321 AACTGAACATGTTGAATACTTTGACGAACTGAAGTTAT-AAAGAAGTCATAAAAGTTTTATAGGT
196 AACTGAACATCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGT
* *
15577385 TTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATT
261 TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATA
15577450 CCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAGATT
326 CCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAGATT
* * * *
15577515 GTTC-AAAGAATTGCTCGAATAAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTATGAATA
391 GTTCGAAA-AATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAATA
*
15577579 GAACTCATAAAAGTTCAACAAGTTCATAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
455 GAACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG
*
15577644 TCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATG
520 TCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGACCAAATG
* * * ** * * *
15577709 ATGCGAATTCCTGAGCATGAAATGTTTGGAAAAACACTCGAAGTAATGAATCGTCTTGAATACTC
585 ATGCGATTTCCCGAGCATGGAATGTTCAGAAAAAC-CTCGAAGGAATGGATCATCTTGAATACTC
* * **
15577774 TATGTAATAGATGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTCGATGTTCATTAAAGTAA
649 TAAGTAATAGAAGTTATAAA-AGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTAA
* * ** * * *
15577838 AAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAAAACATAAACTTGTTTACAAAAG
713 AAAGAGAGAAACATTACTGACATAAATAAGCTTTTAATTCAAAAACAAAAACATGTTTACAAAAT
* ** * *
15577903 GACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTT-TTAAAATTTTCTGCAT
778 GACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTAT-TGAAT
* * * *
15577967 GGAACTGAATGTCTTGAATGCTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
842 GGAACTGAACGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAA
15578032 GTTCG
907 GTTCG
15578037 TAAATTCATC
Statistics
Matches: 2547, Mismatches: 214, Indels: 64
0.90 0.08 0.02
Matches are distributed among these distances:
935 269 0.11
936 276 0.11
937 3 0.00
938 322 0.13
940 2 0.00
941 2 0.00
943 188 0.07
944 834 0.33
945 323 0.13
946 68 0.03
947 260 0.10
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (944 bp):
TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGAACC
AAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG
AAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCGAAAATTAATGAAAGG
AACTGAACATCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGT
TTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATA
CCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAGATT
GTTCGAAAAATTGCTCAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAATAG
AACTCATAAAAGTTCAACAAGTTCAGAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGT
CAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAATATTTAGACCAAATGA
TGCGATTTCCCGAGCATGGAATGTTCAGAAAAACCTCGAAGGAATGGATCATCTTGAATACTCTA
AGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTAAAAA
GAGAGAAACATTACTGACATAAATAAGCTTTTAATTCAAAAACAAAAACATGTTTACAAAATGAC
AAATTATTAAGGCCAGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTATTGAATGGAA
CTGAACGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTTC
GGAAGTTCAAAGAAATGGATCATCTTGCTTGCTT
Found at i:15577652 original size:217 final size:214
Alignment explanation
Indices: 15577123--15578890 Score: 1347
Period size: 217 Copynumber: 8.2 Consensus size: 214
15577113 ATCTTGCTTG
* * * *
15577123 CTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTT-TAACAAGTTCGGAAGTTCCTCAAA
1 CTTTAAGGAA-CAGAAGTTATAAAAGAACTCATAAAAGTTCT-ACAAGTTCAGAAGTTCATCCAA
* * * ** *
15577186 GAACCAAGAGAGAAACCATTATGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
* * * * * * *
15577251 AAATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCG-GAAATTA
128 AAATGACAAACTAT-TTAGACCAAATGATGC-AATTTCT-CGAGCATAGAATGTTCGAAAAATTA
* * * *
15577313 AT-GAA-AGGAACTGAACATGTTGAATA
190 CTCGAATA--AA-TGATCGTCTTGAATA
* * * * * * * ** * *
15577339 CTTTGACGAACTGAAGTTAT-AAAGAAGTCATAAAAGTTTTATAGGTTTGGAAGTTCGTCTAAGA
1 CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAAGA
* ** *
15577403 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATTCCAAAAGTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACAAA
* * * * * *
15577468 ATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAGATTGTTC-AAAGAATTGCTCG
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATAGAATGTTCGAAA-AATTACTCG
*
15577532 AATAAATAGATCATCTTGAATA
194 AATAAAT-GATCGTCTTGAATA
* * * *
15577554 CTTTAAGGAACCA-AAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCATAGGTTCATCCAA
1 CTTTAAGGAA-CAGAAGTTAT-AAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAA
* * *
15577618 GAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACA
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTTACA
* * *
15577683 AAATGACAAACTATTTAGACCAAATGATGCGAATTCCT-GAGCAT-GAAATGTTTGGAAAAA-CA
128 AAATGACAAACTATTTAGACCAAATGATGC-AATTTCTCGAGCATAG-AATG-TTCGAAAAATTA
15577745 CTCGAAGT-AATGAATCGTCTTGAATA
190 CTCGAA-TAAATG-ATCGTCTTGAATA
* * * * * * * * * * **
15577771 CTCTATGTAATAGATGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATTAAA
1 CTTTAAGGAACAGAAGTTATAAA-AGAACTCATAAAAGTTCTACAAG-TTCAGAAGTTCATCCAA
* * *
15577834 GTAA-AAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAAAACATAAACTTGTTTAC
64 G-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACA-AAACTTGTTTAC
* * * * ** * ** * *
15577898 AAAAGGACAAATTATTAAGGCCTGATGATGCGATTTC-CTGAGCATAGAATGTTTTAAAATTTTC
127 AAAATGACAAACTATTTAGACCAAATGATGCAATTTCTC-GAGCATAGAATGTTCGAAAAATTAC
* * *
15577962 T-GCATGGAACTGAAT-GTCTTGAATG
191 TCGAAT--AAATG-ATCGTCTTGAATA
* * *
15577987 CTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTC-GTAAATTCATCAAA
1 CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTCT-ACAAGTTCAG-AAGTTCATCCAA
* * ** *
15578050 GAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
** * * * *
15578115 AAATGA-AATGT-TATTAGACCAAATGAAGTG-ATTTTTCGCGAGCATGGAATGTTCGGAAAATT
128 AAATGACAAACTAT-TTAGACCAAATG-A-TGCA-ATTTCTCGAGCATAGAATGTTCGAAAAATT
* * *
15578177 AAT-GAA-AGGAACTAAACGTCTTGAATA
189 ACTCGAATA--AA-TGATCGTCTTGAATA
* * * * ** * *
15578204 CTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACATGTTTGGAAGCTCGTCCAAGA
1 CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAAGA
* * * ** *
15578269 ACCAAGAGAGAAACAATTATTACATAAATAAGTTTTTATTTCAAATCCGAAAATTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTTACAAA
** * * * * *
15578334 AT-ATTGAACTGTTCATACCAAATGATGCAATTTCTCGAGCATAGATTGTTCGAAAAATTGCTCG
130 ATGA-CAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATAGAATGTTCGAAAAATTACTCG
*
15578398 AAGAAATGGATCGTCTTGAATA
194 AATAAAT-GATCGTCTTGAATA
* * * * * *
15578420 CTATAAGGAACCA-AAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAG
1 CTTTAAGGAA-CAGAAGTTAT-AAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAA
* * * *
15578484 GAACCAAGAGAGAAACAATTCTCACGTCAATCAGTTTTTAATTCAAAGACAAAATCTTGTTTACA
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTTACA
* * * *
15578549 AAATGACAAAGTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAA--ACCT
128 AAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATAGAATGTTCGAAAAATTA-CT
**
15578612 CGAAGGAATGGATCGTCTTGAATA
192 CGAATAAAT-GATCGTCTTGAATA
* * * * * * *
15578636 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTCTACAAGTTCGGATGTTCATCCAAGT
1 CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAAG-
* * * * * * **
15578701 AA-AAAGAGAGAAACAATACTAACATAAATAAGCTTTTAATTTAAAGACAAAAACAAGTTTACAA
65 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTTACAA
* * * ** * * *
15578765 AATGACAAATTATTAAGGCCTGATGATGCAATTTC-CTGAGCATAGAACGTTCAAAAAATTTCTT
129 AATGACAAACTATTTAGACCAAATGATGCAATTTCTC-GAGCATAGAATGTTCGAAAAATTAC-T
* *
15578829 C--ATGGAACTGAACGTCTTGAATA
192 CGAAT--AAATGATCGTCTTGAATA
* *
15578852 CTTTATGGAACCGAAGTTATAAAAGAACTCATAAAAGTT
1 CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTT
15578891 TGGCAAGTCT
Statistics
Matches: 1237, Mismatches: 246, Indels: 138
0.76 0.15 0.09
Matches are distributed among these distances:
214 19 0.02
215 297 0.24
216 429 0.35
217 460 0.37
218 28 0.02
219 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (214 bp):
CTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTCTACAAGTTCAGAAGTTCATCCAAGA
ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAACTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATAGAATGTTCGAAAAATTACTCGAA
TAAATGATCGTCTTGAATA
Found at i:15579704 original size:216 final size:214
Alignment explanation
Indices: 15578930--15581581 Score: 2044
Period size: 216 Copynumber: 12.3 Consensus size: 214
15578920 TCATCTTGCT
* * * * *
15578930 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCAGAAGTTCCTCAAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * ** *
15578995 GAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
* * * ** * * * *
15579060 AAATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTCGAGAGCATGGAATGTTCGGAAATTAA
130 AAATGACAAACTAT-TTAGACCAAATGATGCGA--ATTCCTGAGCATAGAATGTTCGAAAAATAC
* *
15579123 T-GAAAGGAACT-GAACATCTTGAA
192 TCG-AAGGAA-TGGATCGTCTTGAA
* * * * * * * *
15579146 TACTTTGAGGAACTGAACTTAT-AAAGAAGTCATAAAAGTTTTACAGGTTTGGAAGTTCGTCCAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * * *
15579210 GAACCAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTATTTCAAATACCAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
* * * * * * ** *
15579275 AAATAATAAACTGTTCAGACCAAATGATGC-AATTTCTCGAGCATAGATTGTTAAAAAAATTGCT
130 AAATGACAAACTATTTAGACCAAATGATGCGAATTCCT-GAGCATAGAATGTTCGAAAAA-TACT
** * *
15579339 CGAATAAATGGATCGCCTTAAA
193 CGAAGGAATGGATCGTCTTGAA
* * ** ** * *
15579361 TACTTTAAGGAACCA-AAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCATAGGTTCGTCC
1 TACTTTAAGGAA-CAGAAGTTAT-AAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCC
** * *
15579425 AAGAACCAAGAGAGAAACAATTCTCATGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTA
64 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTTA
*
15579490 CAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCAT-GAAATGTTCGGAAAAACA
128 CAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCATAG-AATGTTC-GAAAAATA
*
15579554 CTCGAAGTAATGGATCGTCTTGAA
191 CTCGAAGGAATGGATCGTCTTGAA
* * * * * * * * **
15579578 TACTCTATGTAATAGATGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATTA
1 TACTTTAAGGAACAGAAGTTATAAA-AGAACTCGTAAAAGTTTTACAAG-TTCGGAAGTTCATCC
* * *
15579641 AAGTAA-AAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAAAACATAAACTTGTTT
64 AAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACA-AAACTTGTTT
* * * * ** * * * **
15579705 ACAAAAGGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGACTGTTTG-AAAATTT
127 ACAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCATAGAATGTTCGAAAAATAC
* *
15579769 TCTGTATGGAACTGAAT-GTCTTGAA
192 TC-G-AAGGAA-TGGATCGTCTTGAA
* * * *
15579794 TGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * * ** *
15579859 GAACCAACAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
** * * * * * *
15579924 AAATGA-AATGT-TATTAGACCAAATGAAGTGATTTTTCGC-GAGCATGGAATGTTTGGAAAATT
130 AAATGACAAACTAT-TTAGACCAAATGATGCGA--ATTC-CTGAGCATAGAATG-TTCGAAAAAT
* * *
15579986 AAT-GAAAGGAACT-AAACGTCTTGAA
190 ACTCG-AAGGAA-TGGATCGTCTTGAA
* * * * * *
15580011 TACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACATGTTTGGAAGTTCGTCCAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * * * ** *
15580076 AAACCAAGAGAGAAACAATTATTACATAAATAAGTTTTTATTTCAAATCCGAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTTACA
* * * * * * *
15580141 AAATAATAAACTGTTTAGACCAAATGATGC-AATTTCCCGAGCATAGATTGTTCAAAAAATTGCT
130 AAATGACAAACTATTTAGACCAAATGATGCGAA-TTCCTGAGCATAGAATGTTCGAAAAA-TACT
*
15580205 CGAAGAAATGGATCGTCTTGAA
193 CGAAGGAATGGATCGTCTTGAA
* ** * *
15580227 TACTTTAAGGAACCA-AAGTTATGAAAAGAACCCGTAAAAGTTCAACAAGTTC-AAAGGTTCGTC
1 TACTTTAAGGAA-CAGAAGTTAT-AAAAGAACTCGTAAAAGTTTTACAAGTTCGGAA-GTTCATC
* * * * * * ***
15580290 TAGGAAGCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAGTTCAAGGGCAAAATCTTGTTT
63 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTT
* * * * * * *
15580355 ACAAAATGACAAAATATTT-GGCCAAATGATACGATTTCCCGAGCATAGGACGTTCGAAAAA-AC
127 ACAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCATAGAATGTTCGAAAAATA-
* *
15580418 CTCGAAGCAATGGACCGTCTTGAA
191 CTCGAAGGAATGGATCGTCTTGAA
* * * * * * *
15580442 TACTTTAAGTAATAGAAGTTATAAAAGTACGCGTATATGTTTTACAAGTTCGGATGTTCATCCAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * * * * * * * *
15580507 GTACAAAGAGAGAAACATTTCTCAGAGAAATAAGCTTTTAATTTAAAGGTA-AAAACATGTTTAC
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA--AACAAAACTTGTTTAC
* * * * * * **
15580571 AAAATGACAAATTATTAAGGCCAGATGATGC-AATTTCCTGACCATAGAATGCTCGAAAAATTGT
129 AAAATGACAAACTATTTAGACCAAATGATGCGAA-TTCCTGAGCATAGAATGTTCGAAAAATACT
* * * *
15580635 TGAATGGAACT-AAACATCTTGAA
193 CGAA-GGAA-TGGATCGTCTTGAA
* * *
15580658 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCGAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * * ** * * *
15580723 GAACCGAGAGAGAAACCATTCTAATGTAAATAACTTTTTAATTCAAAGACCAAAACTTATTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
* * * * * *
15580788 AAATGA-ACAAGTTTTTAAACCAAATGAAGAGATGTTTCGC-GAGCAT-GAAATGTTCGAAAAAT
130 AAATGACA-AACTATTTAGACCAAATGATGCGA--ATTC-CTGAGCATAG-AATGTTCGAAAAA-
* *
15580850 TAAT-GAAAGGAACT-GAACGTCTTGAA
189 TACTCG-AAGGAA-TGGATCGTCTTGAA
* * * * *
15580876 TACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTGGAAGTTCGTCCAA
1 TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
* * *
15580941 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATACCAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA-AACAAAACTTGTTTACA
* * * * * * * * *
15581006 AAATAATAAACTGTTCAGACCAAATGATG-TAATTTCTCGAGCATAGATTGTTTGAAAAATTGCT
130 AAATGACAAACTATTTAGACCAAATGATGCGAATTCCT-GAGCATAGAATGTTCGAAAAA-TACT
*
15581070 CGAAGAAATGGATCGTCTTGAA
193 CGAAGGAATGGATCGTCTTGAA
* * * * ** * * * *
15581092 TACTGTATA-GAACCA-AAATTATGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTCCGTC
1 TACTTTA-AGGAA-CAGAAGTTAT-AAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATC
* * *
15581155 CAAGAACC-A-AGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTT
63 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAA-CTTGTTT
* * * *
15581218 ACAAAATGACAAACTATTCAGACCAAATGATGC-AATTTCCTGTGCATGGAATGTTCGGAAAAAC
127 ACAAAATGACAAACTATTTAGACCAAATGATGCGAA-TTCCTGAGCATAGAATGTTC-GAAAAAT
* * *
15581282 ACTCAAAGTAATGGATCATCTTGAA
190 ACTCGAAGGAATGGATCGTCTTGAA
* * ** * * * * *
15581307 TACTCTATGTCATAGAAATTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATCC
1 TACTTTAAGGAACAGAAGTTATAAA-AGAACTCGTAAAAGTTTTACAAG-TTCGGAAGTTCATCC
* * *
15581370 AAGTAA-AAAGAGAGAAACATTTCTTACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTT
64 AAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAAC-AAAACTTGTTT
* * * ** * *
15581434 ACAAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAAT-T
127 ACAAAATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCATAGAATGTTCGAAAAATAC
* *
15581498 TCTGCATGGAACT-GAACGTCTTGAA
192 TC-G-AAGGAA-TGGATCGTCTTGAA
* *
15581523 TACTTTAAGTAACCA-AAGTTATAAAAGAACTCGTAAAAG-TTTAGCAAGTTCGAAAGTTC
1 TACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTTA-CAAGTTCGGAAGTTC
15581582 GAAGAAATGG
Statistics
Matches: 1929, Mismatches: 413, Indels: 188
0.76 0.16 0.07
Matches are distributed among these distances:
213 2 0.00
214 151 0.08
215 385 0.20
216 705 0.37
217 470 0.24
218 204 0.11
219 12 0.01
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (214 bp):
TACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGGAAGTTCATCCAA
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAACTTGTTTACAA
AATGACAAACTATTTAGACCAAATGATGCGAATTCCTGAGCATAGAATGTTCGAAAAATACTCGA
AGGAATGGATCGTCTTGAA
Found at i:15581250 original size:649 final size:648
Alignment explanation
Indices: 15578930--15581582 Score: 2264
Period size: 649 Copynumber: 4.1 Consensus size: 648
15578920 TCATCTTGCT
* *
15578930 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAG-TTCAGAAGTTCCTCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTTC-GAAGTTCGTCAA
* * **
15578994 AGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
65 AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * * *
15579059 AAAATGA-AAAGTTATTAGACCAAATGAAGCGATTTTTCGAGAGCATGGAATGTTCG-GAAATTA
130 AAAATGACAAA-ATATTAGACCAAATGATGCGATTTCTC-AGAGCATAG-ATGTTCGAAAAATTA
* * * * * ** * *
15579122 ATGAAAGGAACT-GAACATCTTGAATACTTTGAGGAACTGAACTTAT-AAAGAAGTCATAAAAGT
192 CTGAAA-GAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGT
* * * * *
15579185 TTTACAGGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAAAAAGTTTTTA
256 TTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * * * *
15579250 TTTCAAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTT-CTCG
321 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCCT-G
* ** * * * * ** * *
15579314 AGCATAGATTGTTAAAAAAATTGCTCGAATA--AA-TGGATCGCCTTAAATACTTTAAGGAACCA
385 AGCATAGAATGTTCGAAAAATT-ATTGAA-AGGAACTGAAACATCTTGAATACTTTAAGGAACCG
* ** ** * *
15579376 AAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAA
448 AAGTTAT-AAAAGAACTCATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAA
* ** * *
15579441 ACAATTCTCATGTCAATAAGTTTTTAATTCAAAGA-CAAAATCTTGTTTACAAAATGACAAACTA
512 ACAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAAAATGAC-AACTT
* * * * *
15579505 TTTAGACCAAATGATGCGAATTCCTGAGCAT-GAAATGTTCGGAAAAA-CACTCGAAGTAA-TGG
575 TTTAAACCAAATGATGAGATTTCCTGAGCATAG-AATGTTC-GAAAAATTACTCGAAGGAACTGG
*
15579567 ATCGTCTTGAA
638 AACGTCTTGAA
* * * ** * * * * * *
15579578 TACTCTATGTAATAGATGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTCGATGTTCATTAA
1 TACTTTAAGGAACCGAAGTTATAAA-AGAACTCGTAAAAGTTTTACAAGTTTCGAAGTTCGTCAA
* * * *
15579642 AGTAA-AAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAA-AACATAAACTTGTTT
65 AG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA-AAACTTGTTT
* * * ** * * *
15579705 ACAAAAGGACAAATTATTAAGGCCTGATGATGCGATTTC-CTGAGCATAGACTGTTTGAAAATTT
128 ACAAAATGACAAAATATT-AGACCAAATGATGCGATTTCTCAGAGCATAGA-TGTTCGAAAAATT
* ** * * * * *
15579769 TCTGTATGGAACTGAAT-GTCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG
191 ACTG-AAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAG
* * * * * *
15579833 TTTGACAAGTTCGGAAGTTCATCAAAGAACCAACAGAGAAACCATTCTGATGTAAATAAGTTTTT
255 TTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
** *
15579898 AATTCAAAGACCAAAACTTGTTTACAAAATGA-AATGTTATT-AGACCAAATGAAGTG-ATTTTT
320 AATTCAAAGACCAAAACTTGTTTACAAAATGACAA-ACTATTCAGACCAAATG-A-TGCA-ATTT
* * * * * *
15579960 CGC-GAGCATGGAATGTTTGGAAAATTAATGAAAGGAACT-AAACGTCTTGAATACTTTGAGGAA
381 C-CTGAGCATAGAATGTTCGAAAAATTATTGAAAGGAACTGAAACATCTTGAATACTTTAAGGAA
* * * *
15580023 CCGAAGTTATAAAAGAACTCATAAAAGTTTTACATGTTTGGAAGTTCGTCCAAAAACCAAGAGAG
445 CCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAG
* * * * * *
15580088 AAACAATTATTACATAAATAAGTTTTTATTTCAAA-TCCGAAAAGTTGTTTACAAAATAATAAAC
510 AAACAATTCTTACATAAATAAGTTTTTAATTCAAAGACC-AAAACTTGTTTACAAAATGA-CAAC
* * * * * * *
15580152 TGTTTAGACCAAATGATGCA-ATTTCCCGAGCATAGATTGTTCAAAAAATTGCTCGAA-GAAATG
573 TTTTTAAACCAAATGATG-AGATTTCCTGAGCATAGAATGTTCGAAAAATTACTCGAAGGAACTG
*
15580215 GATCGTCTTGAA
637 GAACGTCTTGAA
* * ** * *
15580227 TACTTTAAGGAACCAAAGTTATGAAAAGAACCCGTAAAAGTTCAACAAG-TTCAAAGGTTCGTCT
1 TACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTTACAAGTTTCGAA-GTTCGTCA
* * * * * **
15580291 AGGAAGCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAGTTC-AAGGGCAAAATCTTGTTT
64 AAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTT
* * * * *
15580355 ACAAAATGACAAAATATTTGGCCAAATGATACGATTTC-CCGAGCATAGGACGTTCGAAAAA--A
128 ACAAAATGACAAAATATTAGACCAAATGATGCGATTTCTCAGAGCATA-GATGTTCGAAAAATTA
* * * * * * * * *
15580417 CCTCG-AAGCAATGGACCGTCTTGAATACTTTAAGTAA-TAGAAGTTATAAAAGTACGCGTATAT
192 -CT-GAAAGAAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCATAAAA
* * * * * *
15580480 GTTTTACAAGTTCGGATGTTCATCCAAGTACAAAGAGAGAAACATTTCTCA-GAGAAATAAGCTT
254 GTTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACG-TAAATAAGTTT
* *** * * * * *
15580544 TTAATTTAAAGGTAAAAACATGTTTACAAAATGACAAATTATTAAGGCCAGATGATGCAATTTCC
318 TTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCC
* * * *
15580609 TGACCATAGAATGCTCGAAAAATTGTTGAATGGAACT-AAACATCTTGAATACTTTAAGGAACCG
383 TGAGCATAGAATGTTCGAAAAATTATTGAAAGGAACTGAAACATCTTGAATACTTTAAGGAACCG
* * * *
15580673 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCGAAGAACCGAGAGAGAAA
448 AAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAA
* * ** * * *
15580738 CCATTCTAATGTAAATAACTTTTTAATTCAAAGACCAAAACTTATTTACAAAATGAACAAGTTTT
513 CAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATG-ACAACTTTT
* *
15580803 TAAACCAAATGAAGAGATGTTTCGC-GAGCAT-GAAATGTTCGAAAAATTAAT-GAAAGGAACT-
577 TAAACCAAATGATGAGA--TTTC-CTGAGCATAG-AATGTTCGAAAAATTACTCG-AAGGAACTG
15580864 GAACGTCTTGAA
637 GAACGTCTTGAA
* * * *
15580876 TACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACAAGTTTGGAAGTTCGTCCAA
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTTCGAAGTTCGTCAAA
* * *
15580941 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAAATACCAAAAGTTGTTTACA
66 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
* * * * ** * *
15581006 AAATAATAAACTGTTCAGACCAAATGATGTAATTTCTC-GAGCATAGATTGTTTGAAAAATTGCT
131 AAATGACAAAATATT-AGACCAAATGATGCGATTTCTCAGAGCATAGA-TGTTCGAAAAATTACT
* * *
15581070 CG-AAGAAATGGATCGTCTTGAATACTGTATA-GAACCAAAATTATGAATAGAACTCATAAAAGT
194 -GAAAGAAATGGATCGTCTTGAATACTTTA-AGGAACCAAAGTTAT-AAAAGAACTCATAAAAGT
** * * * * *
15581133 TCAACAAGTTCAGAGGTCCGTCCAAGAACC-A-AGAGAAACAATTCTCACGTCAATAAGTTTTTA
256 TTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
15581196 ATTCAAAGA-CAAAATCTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCCTG
321 ATTCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCCTG
* * * * * * * * * * ** **
15581260 TGCATGGAATGTTCGGAAAAA-CACTCAAAGTAA-TGGATCATCTTGAATACTCTATGTCATAGA
385 AGCATAGAATGTTC-GAAAAATTATTGAAAGGAACTGAAACATCTTGAATACTTTAAGGAACCGA
* * * * * *
15581323 AATTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATCCAAGTAA-AAAGAGAGA
449 AGTTATAAA-AGAACTCATAAAAGTTTTACAAG-TTCGGAAGTTCATCCAAG-AACCAAGAGAGA
* * * * *
15581385 AACATTTCTTACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAAATGACAAATTA
511 AACAATTCTTACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAACTTT
* ** * * *
15581450 TTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCT-GCATGGAACT-GA
576 TTAA-ACCAAATGATGAGATTTCCTGAGCATAGAATGTTCGAAAAATTACTCG-AAGGAACTGGA
15581513 ACGTCTTGAA
639 ACGTCTTGAA
* *
15581523 TACTTTAAGTAACCAAAGTTATAAAAGAACTCGTAAAAG-TTTAGCAAG-TTCGAAAGTTCG
1 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTTA-CAAGTTTCG-AAGTTCG
15581583 AAGAAATGGA
Statistics
Matches: 1602, Mismatches: 329, Indels: 149
0.77 0.16 0.07
Matches are distributed among these distances:
646 11 0.01
647 288 0.18
648 403 0.25
649 661 0.41
650 201 0.13
651 37 0.02
652 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (648 bp):
TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTTCGAAGTTCGTCAAA
GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACA
AAATGACAAAATATTAGACCAAATGATGCGATTTCTCAGAGCATAGATGTTCGAAAAATTACTGA
AAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCATAAAAGTTTTAC
AAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
AAGACCAAAACTTGTTTACAAAATGACAAACTATTCAGACCAAATGATGCAATTTCCTGAGCATA
GAATGTTCGAAAAATTATTGAAAGGAACTGAAACATCTTGAATACTTTAAGGAACCGAAGTTATA
AAAGAACTCATAAAAGTTTTACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTT
ACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAACTTTTTAAACCAAA
TGATGAGATTTCCTGAGCATAGAATGTTCGAAAAATTACTCGAAGGAACTGGAACGTCTTGAA
Found at i:15581306 original size:865 final size:865
Alignment explanation
Indices: 15577123--15581581 Score: 4495
Period size: 865 Copynumber: 5.1 Consensus size: 865
15577113 ATCTTGCTTG
* * *
15577123 CTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTCCTCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
* *
15577188 ACCAAGAGAGAAACCATTATGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACCATTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * *
15577253 ATGAAAAGTTATTAGACCAAATGAAGCGATTTTTTGAGAGCATGGAATGTTCGGAAATTAATGAA
131 ATGAAAAGTTTTTAGACCAAATGAAGAGATGTTTCGCGAGCATGGAATGTTCGAAAATTAATGAA
* * * * * *
15577318 AGGAACTGAACATGTTGAATACTTTGACGAACTGAAGTTAT-AAAGAAGTCATAAAAGTTTTATA
196 AGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACA
*
15577382 GGTTTGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAA
261 GGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAA
*
15577447 ATTCCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAG
326 ATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAG
* * *
15577512 ATTGTTC-AAAGAATTGCTCGAATAAATAGATCATCTTGAATACTTTAAGGAACCAAAGTTATGA
391 ATTGTTCGAAA-AATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGA
* *
15577576 ATAGAACTCATAAAAGTTCAACAAGTTCATAGGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
455 ATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
15577641 ACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAA
520 ACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAA
* * *
15577706 ATGATGCGAA-TTCCTGAGCATGAAATGTTTGGAAAAACACTCGAAGTAATGAATCGTCTTGAAT
585 ATGATGC-AATTTCCTGAGCATGGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAAT
* * **
15577770 ACTCTATGTAATAGATGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATTAAAG
649 ACTCTAAGTAATAGAAGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAG
* *
15577835 TAAAAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAAAACATAAACTTGTTTACAA
714 TAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAA
* * ** *
15577900 AAGGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTTTAAAATTTTCTGC
779 AATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCTGC
* *
15577965 ATGGAACTGAATGTCTTGAATG
844 ATGGAACTGAACGTCTTGAATA
* * *
15577987 CTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGTAAATTCATCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
*
15578052 ACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACCATTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * *
15578117 ATGAAATGTTATTAGACCAAATGAAGTGATTTTTCGCGAGCATGGAATGTTCGGAAAATTAATGA
131 ATGAAAAGTTTTTAGACCAAATGAAGAGATGTTTCGCGAGCATGGAATGTTC-GAAAATTAATGA
*
15578182 AAGGAACTAAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTAC
195 AAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTAC
* * * *
15578247 ATGTTTGGAAGCTCGTCCAAGAACCAAGAGAGAAACAATTATTACATAAATAAGTTTTTATTTCA
260 AGGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCA
* * * *
15578312 AAT-CCGAAAATTTGTTTACAAAATATTGAACTGTTCATACCAAATGATGCAATTTCTCGAGCAT
325 AATACC-AAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCAT
*
15578376 AGATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTATAAGGAACCAAAGTTATG
389 AGATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATG
*
15578441 AATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAGGAACCAAGAGAGAAACAATTCT
454 AATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* *
15578506 CACGTCAATCAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAAGTATTTAGACCA
519 CACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
15578571 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAAAC-CTCGAAGGAATGGATCGTCTTGAAT
584 AATGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAAT
* *
15578635 ACTTTAAGTAATAGAAGTTATAAA-AGTACTCGTAAATGTTCTACAAG-TTCGGATGTTCATCCA
649 ACTCTAAGTAATAGAAGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATCCA
* * * * * * **
15578698 AGTAAAAAGAGAGAAACAATACTAACATAAATAAGCTTTTAATTTAAAGACAAAAACAAGTTTAC
712 AGTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTAC
* *
15578763 AAAATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAACGTTCAAAAAATTTCT
777 AAAATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCT
*
15578828 TCATGGAACTGAACGTCTTGAATA
842 GCATGGAACTGAACGTCTTGAATA
* * *
15578852 CTTTATGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTGGCAAG-TCTGGAAGTT--T-AAAG
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAAGTTCATCAAAG
* ** * * * ** *** *
15578913 AA--ATGA-A-TCATC-TTGCTTACTTTAAGGAACCGAAGTT-A-TAAAAGAACTCGTAAAA---
65 AACCAAGAGAGAAACCATT-C-TAATGTAAATAA--GTTTTTAATTCAAAG-AC-C--AAAACTT
** * * ** * *** * * ***
15578968 GTTTAACAAGTTCAGAAGTTCCTCAAAGAACC-AA-GAGAGAAACCATTC-TGATGTAAATAA-G
122 GTTT-ACAAAATGAAAAGTT--T-TTAG-ACCAAATGA-AGAGATGTTTCGCGA-GCATGGAATG
* * * ** ** *** * * *
15579029 TT-----TTTAATTCAAA-G-AC-CAA-AACTTGTTTAC-AAAATGAA---AAGTTAT--TAGAC
180 TTCGAAAATTAA-TGAAAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAA
** ** * ** * ** *
15579079 CAAATGAAGCGATTTTTCGAGAGCATGGAATGTTCGGAAAT-TAATGAAAGGAACTGAACATCTT
244 CTCAT-AAAAG-TTTTAC-AG-GTTTGGAA-GTTC-G---TCCAA-G-AACCAA--G-AGA----
* * * *** ** ****
15579143 GAATACTTTGAGGA-ACTGAACTTATAAAGAAGTCATAAAAGTTTTACAGGT-TTGGAAGTTCGT
291 GAA-AC----A--ATTCT-CAC--ATAAATAAGT--TTTTA--TTT-CAAATACCAAAAGTT-GT
** * * * * ** * * *** *** * *
15579206 CCAAGAACCAAGAGAGAAACAAT-TCTCACATAAAAAAGTTTTTATTTCAAATACCA-AAAGTTG
340 -TTACAA--AATA-ATAAAC--TGT-TCAGA-CCAAATGATGCAATTTC-TCGAGCATAGA-TTG
* * ** * * *
15579269 TTTACAAAATAATAAACTGTTCAGACCAAAT-GATGCAATTTCTCGAGCATAGATTGTTAA--AA
395 -TT-CGAAA-AAT----TGCTC-GAAGAAATGGAT-C---GTCTTGA--AT--ACT-TTAAGGAA
* * * * * * ** ** * * **
15579331 --AAA-TTGCTCGAATAAATGGATCGCCTTAAATACTTTAAGGA-ACCA-AAGTT-ATGAATAGA
443 CCAAAGTT-AT-GAAT--A--GAAC-TCATAAA-AGTTCAACAAGTTCAGAGGTTCGTCCA-AGA
* * * ***** * *
15579390 ACTCATA-AAAGTTCAACAAGTTCAT-AGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATG
499 AC-CA-AGAGAG-A-AACAA-TTC-TCA----CGT-C---AA--TA-AG-TTTTTAATTC-AAAG
* * ** * *
15579453 TCAATAAGT-TTTTAATTCAAAGACAAAATCTTGTTTACAA-AATGACAAACTATTTAGACCAAA
545 ACAA-AA-TCTTGT--TT-----ACAAAA---TG-ACA-AACTAT-T---------TAGACCAAA
*
15579516 TGATGCGAA-TTCCTGAGCATGAAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAATA
586 TGATGC-AATTTCCTGAGCATGGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAATA
* * **
15579580 CTCTATGTAATAGATGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATTAAAGT
650 CTCTAAGTAATAGAAGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGT
* *
15579645 AAAAAGAGAGAAACATTTCTCACATAAATAAATTTTTAATTCAAAAACATAAACTTGTTTACAAA
715 AAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAA
* * * * * *
15579710 AGGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGACTGTTTGAAAATTTTCTGTA
780 ATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCTGCA
* *
15579775 TGGAACTGAATGTCTTGAATG
845 TGGAACTGAACGTCTTGAATA
15579796 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
* *
15579861 ACCAACAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACCATTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * *
15579926 ATGAAATGTTATTAGACCAAATGAAGTGATTTTTCGCGAGCATGGAATGTTTGGAAAATTAATGA
131 ATGAAAAGTTTTTAGACCAAATGAAGAGATGTTTCGCGAGCATGGAATG-TTCGAAAATTAATGA
*
15579991 AAGGAACTAAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTAC
195 AAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTAC
* * * *
15580056 ATGTTTGGAAGTTCGTCCAAAAACCAAGAGAGAAACAATTATTACATAAATAAGTTTTTATTTCA
260 AGGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCA
* *
15580121 AAT-CCGAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCAT
325 AATACC-AAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCAT
*
15580185 AGATTGTTCAAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATG
389 AGATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATG
* * * * * * *
15580250 AAAAGAACCCGTAAAAGTTCAACAAGTTCAAAGGTTCGTCTAGGAAGCAAGAGAGAAACAATTCT
454 AATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
15580315 CACGTCAATAAGTTTTTAGTTCAAGGGCAAAATCTTGTTTACAAAATGACAAAATATTT-GGCCA
519 CACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
15580379 AATGATACGATTTCCCGAGCATAGG-ACGTTCGAAAAAAC-CTCGAAGCAATGGACCGTCTTGAA
584 AATGATGCAATTTCCTGAGCAT-GGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAA
* * *
15580442 TACTTTAAGTAATAGAAGTTATAAA-AGTACGCGTATATGTTTTACAAG-TTCGGATGTTCATCC
648 TACTCTAAGTAATAGAAGTTATAAACA-TACTCGTAAATGTTTTACAAGTTTC-GATGTTCATCC
* * * * * *** *
15580505 AAGTACAAAGAGAGAAACATTTCTCAGAGAAATAAGCTTTTAATTTAAAGGTAAAAACATGTTTA
711 AAGTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTA
* * *
15580570 CAAAATGACAAATTATTAAGGCCAGATGATGCAATTTCCTGACCATAGAATGCTCGAAAAATTGT
776 CAAAATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATT-T
* * *
15580635 -TGAATGGAACTAAACATCTTGAATA
840 CTGCATGGAACTGAACGTCTTGAATA
*
15580660 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCGAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
* * *
15580725 ACCGAGAGAGAAACCATTCTAATGTAAATAACTTTTTAATTCAAAGACCAAAACTTATTTACAAA
66 ACCAAGAGAGAAACCATTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* *
15580790 ATGAACAAGTTTTTAAACCAAATGAAGAGATGTTTCGCGAGCATGAAATGTTCGAAAAATTAATG
131 ATGAA-AAGTTTTTAGACCAAATGAAGAGATGTTTCGCGAGCATGGAATGTTCG-AAAATTAATG
15580855 AAAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTA
194 AAAGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTA
*
15580920 CAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTC
259 CAGGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTC
*
15580985 AAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGTAATTTCTCGAGCAT
324 AAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCAT
* * *
15581050 AGATTGTTTGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTGTATA-GAACCAAAATTAT
389 AGATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTA-AGGAACCAAAGTTAT
*
15581114 GAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTCCGTCCAAGAACC-A-AGAGAAACAATTC
453 GAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTC
*
15581177 TCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTCAGACC
518 TCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACC
* * *
15581242 AAATGATGCAATTTCCTGTGCATGGAATGTTCGGAAAAACACTCAAAGTAATGGATCATCTTGAA
583 AAATGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAA
* * *
15581307 TACTCTATGTCATAGAAATTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAA
648 TACTCTAAGTAATAGAAGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAA
*
15581372 GTAAAAAGAGAGAAACATTTCTTACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACA
713 GTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACA
*
15581437 AAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCTG
778 AAATGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCTG
15581502 CATGGAACTGAACGTCTTGAATA
843 CATGGAACTGAACGTCTTGAATA
* * *
15581525 CTTTAAGTAACCAAAGTTATAAAAGAACTCGTAAAAGTTT-AGCAAGTTCGAAAGTTC
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTC
15581582 GAAGAAATGG
Statistics
Matches: 2901, Mismatches: 485, Indels: 417
0.76 0.13 0.11
Matches are distributed among these distances:
848 6 0.00
849 3 0.00
850 12 0.00
851 1 0.00
852 6 0.00
853 7 0.00
854 8 0.00
855 2 0.00
856 4 0.00
857 9 0.00
858 11 0.00
859 13 0.00
860 11 0.00
861 16 0.01
862 6 0.00
863 86 0.03
864 562 0.19
865 937 0.32
866 362 0.12
867 3 0.00
870 1 0.00
871 1 0.00
872 3 0.00
874 9 0.00
875 2 0.00
876 5 0.00
877 2 0.00
878 7 0.00
879 5 0.00
880 9 0.00
882 3 0.00
883 3 0.00
884 1 0.00
885 7 0.00
886 13 0.00
887 11 0.00
888 7 0.00
889 8 0.00
890 5 0.00
891 1 0.00
893 2 0.00
894 7 0.00
895 7 0.00
896 1 0.00
897 3 0.00
898 7 0.00
899 4 0.00
900 7 0.00
901 6 0.00
902 8 0.00
903 12 0.00
904 24 0.01
905 22 0.01
906 13 0.00
907 8 0.00
908 6 0.00
909 6 0.00
910 4 0.00
911 7 0.00
912 3 0.00
913 1 0.00
914 7 0.00
915 7 0.00
916 2 0.00
919 5 0.00
920 10 0.00
921 7 0.00
922 11 0.00
923 13 0.00
924 6 0.00
925 1 0.00
926 5 0.00
927 3 0.00
929 9 0.00
930 5 0.00
931 8 0.00
932 2 0.00
933 5 0.00
934 2 0.00
935 9 0.00
937 3 0.00
938 1 0.00
939 1 0.00
943 42 0.01
944 265 0.09
945 20 0.01
946 10 0.00
947 8 0.00
948 16 0.01
949 10 0.00
950 13 0.00
951 11 0.00
952 8 0.00
953 4 0.00
954 2 0.00
955 8 0.00
956 8 0.00
957 6 0.00
958 1 0.00
959 12 0.00
960 3 0.00
961 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (865 bp):
CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCAAAGA
ACCAAGAGAGAAACCATTCTAATGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
ATGAAAAGTTTTTAGACCAAATGAAGAGATGTTTCGCGAGCATGGAATGTTCGAAAATTAATGAA
AGGAACTGAACGTCTTGAATACTTTGAGGAACCGAAGTTATAAAAGAACTCATAAAAGTTTTACA
GGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTATTTCAA
ATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGAGCATAG
ATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAA
TAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
TGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAACACTCGAAGTAATGGATCGTCTTGAATAC
TCTAAGTAATAGAAGTTATAAACATACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTA
AAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAAA
TGACAAATTATTAAGGCCTGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCTGCAT
GGAACTGAACGTCTTGAATA
Found at i:15582003 original size:216 final size:216
Alignment explanation
Indices: 15581580--15582819 Score: 1123
Period size: 216 Copynumber: 5.7 Consensus size: 216
15581570 GTTCGAAAGT
* * ** * * ** * *
15581580 TCGAAGAAATGGATCATCTTGCTTGCTTTAAGGAACCGAAGTAATAAAAGAACTCGTAAAACTTT
1 TCGAAGGAATGGATCGTCTTGAATACTTTAAGAAAATGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * **
15581645 GACAAGTTCGGAAGTTCATCAAAGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAAT
66 TACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * *
15581710 TCAAAGACCAAAACTTGTTTACAAAATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTCGCGA
131 TCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT-TTAGACCAAATGATGC-AATTTCTCGA
* *
15581773 GCTTGGAATGTTCGAAAAATTAA
194 GCATGGAATGTTCGAAAAATTAC
* * *
15581796 T-GAAAGGAACT-GAACGTCTTGAATACTTTGAGAAAATGAAGTTATAAAAGAACTCATAAAAGT
1 TCG-AAGGAA-TGGATCGTCTTGAATACTTTAAGAAAATGAAGTTATAAAAGAACTCGTAAAAGT
* * * *
15581859 TTTACAGGTTTGGAAGTTCGTCCAAGAACCAAGAAAGAAACAATTCTCACATAAAAAAGTTTTTA
64 TTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
* * * * * * *
15581924 TTTCAAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCGA
129 ATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGA
* * *
15581989 GCATAGATTGTTCGAAAAATTGC
194 GCATGGAATGTTCGAAAAATTAC
* * * * *
15582012 TCGAAGAAATGGATCGTTTTGAATATTTTAAGGAACAA--AAGTTATGAATAGAACTCATAAAAG
1 TCGAAGGAATGGATCGTCTTGAATACTTTAA-GAA-AATGAAGTTAT-AAAAGAACTCGTAAAAG
** * * * * * * * *
15582075 TTGAACAAGTTCAGAGGTTCGTCCAGGAACCAAGGGAGAAACAATTGTCACGTCAATAAGTTTTA
63 TTTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
*
15582140 AATTCAAAGA-CAAAATCCTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT
128 AATTCAAAGACCAAAA--CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCT
* *
15582203 TGAGCATGGAATGTTCGGAAAAA-CAC
191 CGAGCATGGAATGTTC-GAAAAATTAC
* * * * * * *
15582229 TCGAAGTAAT-GATCATCTTGAATACTCTAAG-TAATAGAAGTTATAAACGTACTCGTAAATGTT
1 TCGAAGGAATGGATCGTCTTGAATACTTTAAGAAAAT-GAAGTTATAAAAGAACTCGTAAAAGTT
* * * * * *
15582292 GTGCAAGTTTC-GATGTTCATCCAAGTAA-AAAGAGAGAAACATTTCTCACATAAATAAGTTTTT
65 TTACAAG-TTCGGAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* * * * * *
15582355 AATTCAAAGACCAATAGTTTTTTACAAAATGATAAACTGTTTAGACTAAATGATG-AGATTTCCT
128 AATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCA-ATTT-CT
** * *
15582419 C-AGCACAGAATGTT-TAGAAAATTGC
191 CGAGCATGGAATGTTCGA-AAAATTAC
** * * * * *
15582444 TCGAAGGAATGGATCACCTTGAATACTTTAGGGAAACGAAGTTATAAAAGAACTCTTAAAAGTTC
1 TCGAAGGAATGGATCGTCTTGAATACTTTAAGAAAATGAAGTTATAAAAGAACTCGTAAAAGTTT
* ** * * * * *
15582509 AACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACATTTCTTACATCAATAATTTTTTAAT
66 TACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* *
15582574 TCAAAGA-GAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCCGA
131 TCAAAGACCAAAA-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCT-CGA
* **
15582637 GTATGGAATGTTCGAAAAAACAC
194 GCATGGAATGTTCGAAAAATTAC
* * *
15582660 TCGAAGGAATGGATCGTCTTGAATACTAAATTTAAG-TAATAGAAGTTGTAAAAGTACTCGTAAA
1 TCGAAGGAATGGATCGTCTTGAATAC----TTTAAGAAAAT-GAAGTTATAAAAGAACTCGTAAA
* * * * * *
15582724 TGTTTTACAAGTTCGGATGTTTGTCCAAGTACAAAGAGAGAAACAATTCCCACATAAATAAGTTT
61 AGTTTTACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTT
* * *
15582789 TTAATTCAAAGACAAAAACTTTTTTATAAAA
126 TTAATTCAAAGACCAAAACTTGTTTACAAAA
15582820 GAACTCTTAA
Statistics
Matches: 820, Mismatches: 166, Indels: 72
0.78 0.16 0.07
Matches are distributed among these distances:
213 3 0.00
214 7 0.01
215 137 0.17
216 395 0.48
217 162 0.20
218 11 0.01
219 2 0.00
220 99 0.12
221 4 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
TCGAAGGAATGGATCGTCTTGAATACTTTAAGAAAATGAAGTTATAAAAGAACTCGTAAAAGTTT
TACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAACTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGC
ATGGAATGTTCGAAAAATTAC
Found at i:15582383 original size:432 final size:431
Alignment explanation
Indices: 15581580--15582819 Score: 1439
Period size: 432 Copynumber: 2.9 Consensus size: 431
15581570 GTTCGAAAGT
* ** * * * * *
15581580 TCGAAGAAATGGATCATCTTGCTTGCTTTAAGGAACCGAAGTAATAAAAGAACTCGTAAAACTTT
1 TCGAAGAAATGGATCACCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAA-GTT
* * * * * * * *
15581645 G-ACAAGTTCGGAAGTTCATCAAAGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAA
65 GAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAA
* * *
15581709 TTCAAAGACCAAAA-CTTGTTTACAAAATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTCGC
130 TTCAAAGA-CAAAATCTTGTTTACAAAATGACAAACTAT-TTAGACCAAATGATGCGA-TTTCTC
* * * * * *
15581771 GAGCTTGGAATGTTC-GAAAAATTAAT-GAAAGGAACTGAACGTCTTGAATACTTTGAG-AAAAT
192 GAGCATGGAATGTTCGGAAAAA-CACTCG-AAGGAA-TGATCGTCTTGAATACTTTAAGTAATA-
* * * * * * * *
15581833 GAAGTTATAAAAGAACTCATAAAAGTTTTACAGGTTTGGAAGTTCGTCCAAG-AACCAAGAAAGA
253 GAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCGTCCAAGTAA-AAAGAGAGA
* * * *
15581897 AACAATTCTCACATAAAAAAGTTTTTATTTCAAATACCAAAAGTTGTTTACAAAATAATAAACTG
317 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATAATAAACTG
* *
15581962 TTCAGACCAAATGATGCA-ATTT-CTCGAGCATAGATTGTTCGA-AAAATTGC
382 TTCAGACCAAATGATG-AGATTTCCTC-AGCACAGAATGTT-GAGAAAATTGC
*** * * *
15582012 TCGAAGAAATGGATCGTTTTGAATATTTTAAGGAACAAAAGTTATGAATAGAACTCATAAAAGTT
1 TCGAAGAAATGGATCACCTTGAATACTTTAAGGAACAGAAGTTAT-AAAAGAACTCATAAAAGTT
* * * *
15582077 GAACAAGTTCAGAGGTTCGTCCAGGAACCAAGGGAGAAACAATTGTCACGTCAATAAGTTTTAAA
65 GAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAA
*
15582142 TTCAAAGACAAAATCCTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTTGA
130 TTCAAAGACAAAAT-CTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGA
* * *
15582206 GCATGGAATGTTCGGAAAAACACTCGAAGTAATGATCATCTTGAATACTCTAAGTAATAGAAGTT
194 GCATGGAATGTTCGGAAAAACACTCGAAGGAATGATCGTCTTGAATACTTTAAGTAATAGAAGTT
* * * * *
15582271 ATAAACGTACTCGTAAATGTTGTGCAAGTTTCGATGTTCATCCAAGTAAAAAGAGAGAAACATTT
259 ATAAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCGTCCAAGTAAAAAGAGAGAAACAATT
* * *
15582336 CTCACATAAATAAGTTTTTAATTCAAAGACCAATAGTTTTTTACAAAATGATAAACTGTTTAGAC
324 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATAATAAACTGTTCAGAC
* *
15582401 TAAATGATGAGATTTCCTCAGCACAGAATGTTTAGAAAATTGC
389 CAAATGATGAGATTTCCTCAGCACAGAATGTTGAGAAAATTGC
* * *
15582444 TCGAAGGAATGGATCACCTTGAATACTTTAGGGAA-ACGAAGTTATAAAAGAACTCTTAAAAGTT
1 TCGAAGAAATGGATCACCTTGAATACTTTAAGGAACA-GAAGTTATAAAAGAACTCATAAAAGTT
* * * * * *
15582508 CAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACATTTCTTACATCAATAATTTTTTAA
65 GAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAA
*
15582573 TTCAAAGAGAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TCCGA
130 TTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGA
* *
15582637 GTATGGAATGTTCGAAAAAACACTCGAAGGAATGGATCGTCTTGAATACTAAATTTAAGTAATAG
194 GCATGGAATGTTCGGAAAAACACTCGAAGGAAT-GATCGTCTTGAATAC----TTTAAGTAATAG
* * *
15582702 AAGTTGTAAAAGTACTCGTAAATGTTTTACAAG-TTCGGATGTTTGTCCAAGTACAAAGAGAGAA
254 AAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTC-GATGTTCGTCCAAGTAAAAAGAGAGAA
* * * *
15582766 ACAATTCCCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTTTTTATAAAA
318 ACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAA
15582820 GAACTCTTAA
Statistics
Matches: 686, Mismatches: 100, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
430 4 0.01
431 161 0.23
432 256 0.37
433 118 0.17
434 31 0.05
435 4 0.01
436 112 0.16
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (431 bp):
TCGAAGAAATGGATCACCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCATAAAAGTTG
AACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAAT
TCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGC
ATGGAATGTTCGGAAAAACACTCGAAGGAATGATCGTCTTGAATACTTTAAGTAATAGAAGTTAT
AAAAGTACTCGTAAATGTTTTACAAGTTTCGATGTTCGTCCAAGTAAAAAGAGAGAAACAATTCT
CACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTACAAAATAATAAACTGTTCAGACCA
AATGATGAGATTTCCTCAGCACAGAATGTTGAGAAAATTGC
Found at i:15583191 original size:216 final size:214
Alignment explanation
Indices: 15582812--15583920 Score: 1113
Period size: 216 Copynumber: 5.1 Consensus size: 214
15582802 AAAAACTTTT
* * ** *** *
15582812 TTATAAAAGAACTCTTAAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACAA
1 TTATAAAAGTACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
* * * * *
15582877 TTCTCACGTCAATAAGTTTTTCATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAG
66 TTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAAG
* * * *
15582942 ACCAAATGATGCAATTTCCCGAGCATGGAATGTTCGAAAAAACACTCGAAGGAATGGATCGTCTT
131 GCCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAAATACTCGAAGGAATGGATCGTCTT
15583007 GAATACTTTAAGTAGTAGAAG
196 GAATACTTTAAGTA-TA-AAG
* * * * *
15583028 TTATAAAAGTACTCGTAAATGTTTTACAAGTTTGGATGTTCGTCCAAGTACAAAGAGTGAAGCAA
1 TTATAAAAGTACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
* * *
15583093 TTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACATAATGGCAAATTATTAAG
66 TTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAAG
* * * * * *
15583158 GTCAGATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATTTCT-GAATGGAACT-AAACGTC
131 GCCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAAATACTCGAA-GGAA-TGGATCGTC
* *
15583221 TTGAATACTTTAAGGAACCAAAG
194 TTGAATACTTTAA-GTA-TAAAG
* ** * *
15583244 TTACAAAA-TAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACA
1 TTATAAAAGT-ACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * * * * * * * *
15583308 ATTCTCACATAAATAATTTTTTATTTCAAATACCAAAAGTTGTTTACAAAATAATAAACTGTTCA
65 ATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAA
* * * * * *
15583373 GACCAAATGATGCAATTT-CTCAGGCATAG-ATGGTTCGAAAAATTGCTCGAAGAAATGGATTGT
130 GGCCAAATGATGCAATTTCCTGA-GCATAGAAT-GTTCGAAAAAATACTCGAAGGAATGGATCGT
*
15583436 CTTGAATACTTTAAGGATCCAAAG
193 CTTGAATACTTTAAGTAT--AAAG
* * * ** ** *
15583460 TTATGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACA
1 TTAT-AAAAGTACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACA
* * * *
15583525 ATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATT-T
65 ATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAA
* * * * *
15583589 GGACCAAATGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAATACTCAAAGTAATGGATCATC
130 GG-CCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAAATACTCGAAGGAATGGATCGTC
15583654 TTGAATACTAAATTTAAGTAATAGAAG
194 TTGAATAC----TTTAAGT-ATA-AAG
* * * * * *
15583681 TTATAAATGTACACGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGTAA-AAAGAGAGAAACA
1 TTATAAAAGTACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAG-AACCAAGAGAGAAACA
* * *
15583745 TTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAAATGACAAATTATTAA
65 ATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAA
** * * * * *
15583810 GGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCTAC-ATGGAACT-GAACGT
130 GGCCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAAATACT-CGAAGGAA-TGGATCGT
*
15583873 CTTGAATACTTTAAGGA-ACCGAAG
193 CTTGAATACTTTAAGTATA---AAG
* *
15583897 TTATAAAAGGACACGTAAAAGTTT
1 TTATAAAAGTACTCGTAAAAGTTT
15583921 GGCAATTTCG
Statistics
Matches: 730, Mismatches: 136, Indels: 54
0.79 0.15 0.06
Matches are distributed among these distances:
214 1 0.00
215 13 0.02
216 371 0.51
217 162 0.22
218 5 0.01
220 157 0.22
221 19 0.03
222 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (214 bp):
TTATAAAAGTACTCGTAAAAGTTTTACAAGTTTGGATGTTCGTCCAAGAACCAAGAGAGAAACAA
TTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAATGACAAACTATTAAG
GCCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAAATACTCGAAGGAATGGATCGTCTT
GAATACTTTAAGTATAAAG
Found at i:15584390 original size:513 final size:515
Alignment explanation
Indices: 15583444--15584433 Score: 1187
Period size: 513 Copynumber: 1.9 Consensus size: 515
15583434 GTCTTGAATA
* * * *
15583444 CTTTAAGGATCCAAAGTTATGAATAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAG
1 CTTTAAGGAACCAAAGTTATGAAAAGAACTCATAAAAGTTCAACAAGTTCAGAAGTTCGTCAAAG
*
15583509 AACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAA
66 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAA
* * * *
15583574 AATGACAAACTATTTGGACCAAATGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAATACTCA
131 AATGACAAACTATTTAGACCAAATGAAGCAATTTCCGGAGCATGGAATGTTCGGAAAAATAATCA
* * * * * * *
15583639 AAGTAATGGATCATCTTGAATACTAAATTTAAGTAATAGAAGTTATAAATGTACACGTAAATGTT
196 AAGGAATGGATCATCCTGAATAC---ATTTAAGGAATACAAGTTATAAAAGAACACGTAAAAGTT
* *
15583704 TTACAAGTTTCGATGTTCATCCAAGTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAA
258 TTACAAGTTTCGAAGTTCATCCAAGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * * ** * *
15583769 TTCAAAAACAAAAACTTGTTTACAAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAG
323 TTCAAAAACAAAAACTTGTTTACAAAATAACAAACTATTAAGACCAAATGATGCAATTTCCCGAG
* * * * *
15583834 CATAGAATGTTCGAAAAATTTCTACATGGAACTGAACGTCTTGAATACTTTAAGGAACCGAAGTT
388 CATACAATGTTCGAAAAATTGCTACATAGAAATGAACGTCTTGAATACTTTAAGGAACCAAAGTT
* *
15583899 AT-AAAAGGACACGTAAAAGTTTGGCAATTTCGAAAGTTCGAAGAAATGAATCATCTTGCTTG
453 ATGAAAAGAACACATAAAAGTTTGGCAATTTCGAAAGTTCGAAGAAATGAATCATCTTGCTTG
* * **
15583961 CTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCAAA
1 CTTTAAGGAACCAAAGTTATGAAAAGAACTCATAAAAGTTCAACAAGTTCAG-AAGTTCGTCAAA
* * * *
15584024 GAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCGAAGACCAAAA-CTTGTTTAC
65 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA-CAAAATCTTGTTTAC
* * *
15584088 AAAATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTCGGGAGCATGGAATGTTC-GAAAAAT
129 AAAATGACAAACTAT-TTAGACCAAATGAAGC-A-ATTTCCGGAGCATGGAATGTTCGGAAAAAT
* * * ** * * *
15584150 GAATGAAAGGATTTGATTGTCCTGAATAC-TTTGAGGAA-CCAAGCTTATAAAAGAACTCGTAAA
191 -AATCAAAGGAATGGATCATCCTGAATACATTTAAGGAATACAAG-TTATAAAAGAACACGTAAA
** *
15584213 AGTTTTACAAG-TTCGAAAGTTGGTCCAAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGT
254 AGTTTTACAAGTTTCG-AAGTTCATCCAAGTAA-AAAGAGAGAAACAATTCTCACATAAATAAGT
* * * * *
15584276 TTTTAATTCAAAGATC-AAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATT
317 TTTTAATTCAAA-AACAAAAACTTGTTTACAAAATAACAAACTATTAAGACCAAATGATGCAATT
* * * *
15584340 TCCCGAGCATACATTGTTCGAAAAGTTGCT-CGTAGAAATGGATCGTCTTGAATACTTTAAGGAA
381 TCCCGAGCATACAATGTTCGAAAAATTGCTACATAGAAAT-GAACGTCTTGAATACTTTAAGGAA
*
15584404 CCAAAGTTATGAAAAGAACTCATAAAAGTT
445 CCAAAGTTATGAAAAGAACACATAAAAGTT
15584434 CAACAAGTTC
Statistics
Matches: 397, Mismatches: 64, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
512 15 0.04
513 179 0.45
514 19 0.05
515 19 0.05
516 103 0.26
517 62 0.16
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (515 bp):
CTTTAAGGAACCAAAGTTATGAAAAGAACTCATAAAAGTTCAACAAGTTCAGAAGTTCGTCAAAG
AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAA
AATGACAAACTATTTAGACCAAATGAAGCAATTTCCGGAGCATGGAATGTTCGGAAAAATAATCA
AAGGAATGGATCATCCTGAATACATTTAAGGAATACAAGTTATAAAAGAACACGTAAAAGTTTTA
CAAGTTTCGAAGTTCATCCAAGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
AAAAACAAAAACTTGTTTACAAAATAACAAACTATTAAGACCAAATGATGCAATTTCCCGAGCAT
ACAATGTTCGAAAAATTGCTACATAGAAATGAACGTCTTGAATACTTTAAGGAACCAAAGTTATG
AAAAGAACACATAAAAGTTTGGCAATTTCGAAAGTTCGAAGAAATGAATCATCTTGCTTG
Found at i:15584421 original size:217 final size:216
Alignment explanation
Indices: 15583961--15584870 Score: 901
Period size: 217 Copynumber: 4.2 Consensus size: 216
15583951 ATCTTGCTTG
* * *
15583961 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGA
1 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGA
* * ** * *
15584026 ACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCGAAGACCAAAA-CTTGTTTACAA
66 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACCTTGTTTACAA
* * * ** *
15584090 AATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTCGGGAGCATGGAATGTTCGAAAAATGAA
131 AATGACAAACTAT-TTAGACCAAATGATGC-A-ATTTCCTGAGCATAGAATGTTCGAAAAATG-A
* * * * * *
15584153 TGAAAGGATTTGATTGTCCTGAATA
192 TCAAAGAAATGGATCGTCTTGAATA
* *
15584178 CTTTGAGGAACC-AAGCTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTGGTCCAAG
1 CTTTAAGGAACCAAAG-TTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAG
*
15584242 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAA-GTTGTTTACA
65 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACCTTGTTTACA
* * * * * * * *
15584306 AAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCATACATTGTTCGAAAAGTTGCTC
130 AAATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAA-ATGATC
**
15584371 GTAGAAATGGATCGTCTTGAATA
194 AAAGAAATGGATCGTCTTGAATA
* ** * * * *
15584394 CTTTAAGGAACCAAAGTTATGAAAAGAACTCATAAAAGTTCAACAAGTTC-AGAGGTTTGTCTAG
1 CTTTAAGGAACCAAAGTTAT-AAAAGAACTCGTAAAAGTTTTACAAGTTCGA-AAGTTCGTCCAA
* * * *
15584458 GAAGCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAATCTTGTTTAC
64 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACCTTGTTTAC
* * * *
15584522 ATAATGACAAACTATTTAGACCAAATGATGCGATTTCCTGAGCATGGAATGTTCGGAAAAA-CAC
129 AAAATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATAGAATGTTC-GAAAAATGA-
*
15584586 TCAAAGTAATGGATCGTCTTGAATA
192 TCAAAGAAATGGATCGTCTTGAATA
* * * * * * *
15584611 CTAAATTTAAGTAA-TAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCG-ATGTTCAT
1 C----TTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAGTTTTACAAG-TTCGAAAGTTCGT
* *
15584674 CCAAGTAA-AAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAA-ATCAAAACCTTG
60 CCAAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACCTTG
* * * ** *
15584737 TTTACAAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGTAAAA
124 TTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATAGAATGTTCG-AAAA
* * ** * * *
15584802 TTTATGCATGGAACT-AAACGTCTTGAATA
188 ATGAT-CAAAGAAATGGATCGTCTTGAATA
*
15584831 CTTTAAGGAACCAAAGTTATAAAAGAATTCGTAAAAGTTT
1 CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT
15584871 GGCAAGTTTG
Statistics
Matches: 574, Mismatches: 96, Indels: 47
0.80 0.13 0.07
Matches are distributed among these distances:
216 93 0.16
217 281 0.49
218 24 0.04
219 3 0.01
220 147 0.26
221 26 0.05
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (216 bp):
CTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGATCAAAACCTTGTTTACAA
AATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATAGAATGTTCGAAAAATGATCAA
AGAAATGGATCGTCTTGAATA
Found at i:15585035 original size:950 final size:947
Alignment explanation
Indices: 15582038--15585825 Score: 4521
Period size: 950 Copynumber: 4.0 Consensus size: 947
15582028 TTTTGAATAT
* * * * ** * *
15582038 TTTAAGGAACAAAAGTTATGAATAGAACTCATAAAAG-TTGAACAAGTTCAGAGGTTCGTCCAGG
1 TTTAAGGAACAGAAGTTAT-AAAAGAACTCGTAAAAGTTTG-ACAAGTTCGGAAATTCGTCAAAG
* * * *
15582102 AACCAAG-GGAGAAACAATTGTCACGTCAATAAGTTTTAAATTCAAAGACAAAATCCTT-TTTAC
64 AACCAAGAGG-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAA-ACTTGTTTAC
* * *
15582165 AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTT--GAGCATGGAATGTTCGGAAAAA-C
127 AAAATGA-AAATTA-TTAGACCAAATGAAGCGATTT-TTCGGAGCATGGAATGTTC-GAAAAATT
* * * * * * * *
15582227 ACTCG-AAGTAA-TGATCATCTTGAATACTCTAAGTAA-TAGAAGTTATAAACGTACTCGTAAAT
188 AAT-GAAAGGAACTGATCATCTTGAATACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAA
* * * ** * *
15582289 GTTGTGCAAGTTTC-GATGTTCATCCAAGTAA-AAAGAGAGAAACATTTCTCACATAAATAAGTT
251 GTTTTACAAG-TTCGGAAGTTGGTCCAAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTT
* * * *
15582352 TTTAATTCAAAGACCAATAGTTTTTTACAAAATGATAAACTGTTTAGACTAAATGATG-AGATTT
314 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCA-ATTT
* * * * ** * *
15582416 CCTCAGCACAGAATGTT-TAGAAAATTGCTCGAAGGAATGGATCACCTTGAATACTTTAGGGAAA
378 CC-CAGCATAGATTGTTCGA-AAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAAC
* * *
15582480 CGAAGTTAT-AAAAGAACTCTTAAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAG
441 CAAAGTTATGAAAAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAG
* * * * *
15582544 AAACATTTCTTACATCAATAATTTTTTAATTCAAAGAGAAAATCTTGTTTACAAAATGACAAACT
506 AAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACT
* * * *
15582609 ATTTAGACCAAATGATGCGATTTTCC-GAGTATGGAATGTTCGAAAAAACACTCGAAGGAATGGA
571 ATTTAGACCAAATGATGC-AATTTCCTGAGCATGGAATGTTCGAAAAAACACTCAAAGTAATGGA
* * *
15582673 TCGTCTTGAATACTAAATTTAAGTAATAGAAGTTGTAAAAGTACTCGTAAATGTTTTACAAG-TT
635 TCATCTTGAATACTAAATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTT
** * * *
15582737 CGGATGTTTGTCCAAGTACAAAGAGAGAAACAATTCCCACATAAATAAGTTTTTAATTCAAAGAC
700 C-GATGTTCATCCAAGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAAC
* * ** * * * * * ***
15582802 AAAAACTTTTTTATAAAA-GAACTCTTAAAAGTTCAACAAGTTCATAGGTTCG-TCCAAGAACCA
764 AAAAACTTGTTTACAAAATG-A--C---AAA-TT-ATTAAG-GCCT--GAT-GATGCGATTTCC-
* * * * * * ** ** * ** **
15582865 AGAGAGAAACAAT-TCTCACGTCAATAAGTTT-TTCATTCAAAGACAAAATCTTGTTTAC-AAAA
816 TGAG-CATAGAATGT-T--CG--AA-AAATTTCTGCATGGAACTA-AACATCTTGAATACTTTAA
* * * * ** * ** ** * ** *
15582927 TG-A-CAAACTATTTAGACCAAAT-GATGCAA-TTTCCCGAGCATGGAATGTTCGAAAAAACACT
873 GGAACCAAAGT-TATAAAAGAACTCG-TAAAAGTTTGGCAAGTTTGGAA-GTTCG-AAGAA-A-T
* ** *
15582988 CGAAGGAATGGATCGTCTTGAATAC
932 -G--GG--T-CAT--T-TTGCTTGC
* ** * * * * ** * *
15583013 TTTAAGTAGTAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTTGGATGTTCGTCCAAGTA
1 TTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGAA
* * * * *
15583078 CAAAGAGTGAAGCAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACATAA
66 CCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAA
* ** * * * * * * **
15583143 TGGCAAATTATTAAGGTCAGATGATGC-AATTTCCTGAGCATAGAATGTTCGAAAAATTTCTGAA
131 T-GAAAATTATT-AGACCAAATGAAGCGATTTTTCGGAGCATGGAATGTTCGAAAAATTAATGAA
* * * * * * **
15583207 TGGAACTAAACGTCTTGAATACTTTAAGGAACCAAAGTTACAAAATAACTCGTAAAAGTTTGGCA
194 AGGAACTGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACA
* * * *
15583272 AGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAATTTTTTATTTCAA
259 AGTTCGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* * *
15583337 ATACCAAAAGTTGTTTACAAAATAATAAACTGTTCAGACCAAATGATGCAATTTCTCAGGCATAG
324 AGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCA-GCATAG
* * *
15583402 ATGGTTCGAAAAATTGCTCGAAGAAATGGATTGTCTTGAATACTTTAAGGATCCAAAGTTATGAA
388 ATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAA
*
15583467 TAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
453 AAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
15583532 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTGGACCAAA
518 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
* *
15583597 TGATGCAATTTCCTGAGCATGGAATGTTCGGAAAAATACTCAAAGTAATGGATCATCTTGAATAC
583 TGATGCAATTTCCTGAGCATGGAATGTTCGAAAAAACACTCAAAGTAATGGATCATCTTGAATAC
*
15583662 TAAATTTAAGTAATAGAAGTTATAAATGTACACGTAAATGTTTTACAAGTTTCGATGTTCATCCA
648 TAAATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCA
*
15583727 AGTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTAC
713 AGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTAC
15583792 AAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCT
778 AAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCT
* * * * * *
15583857 ACATGGAACTGAACGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGGACACGTAAAAGTTTG
843 GCATGGAACTAAACATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
* ** *
15583922 GCAA-TTTCGAAAGTTCGAAGAAATGAATCATCTTGCTTGC
908 GCAAGTTT-GGAAGTTCGAAGAAATGGGTCATTTTGCTTGC
*
15583962 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAAGTTCGTCAAAGA
1 TTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAA-TTCGTCAAAGA
* * * * * *
15584026 ACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCGAAGACCAAAACTTGTTTACAAA
65 ACCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAA
*
15584091 ATGAAAAGTTATTAGACCAAATGAAGCGATTTTTCGGGAGCATGGAATGTTCGAAAAATGAATGA
130 ATGAAAA-TTATTAGACCAAATGAAGCGATTTTTC-GGAGCATGGAATGTTCGAAAAATTAATGA
** ** * *
15584156 AAGGATTTGATTGTCCTGAATACTTTGAGGAACC-AAGCTTATAAAAGAACTCGTAAAAGTTTTA
193 AAGGAACTGATCATCTTGAATACTTTAAGGAACCAAAG-TTATAAAAGAACTCGTAAAAGTTTTA
*
15584220 CAAGTTCGAAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
257 CAAGTTCGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
*
15584285 AAAGATCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCAT
322 AAAGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCC-AGCAT
* * *
15584350 ACATTGTTCGAAAAGTTGCTCGTAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATG
386 AGATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATG
* * * *
15584415 AAAAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTTGTCTAGGAAGCAAGAGAGAAACAATTCT
451 AAAAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
15584480 CACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACATAATGACAAACTATTTAGACCA
516 CACGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
15584545 AATGATGCGATTTCCTGAGCATGGAATGTTCGGAAAAACACTCAAAGTAATGGATCGTCTTGAAT
581 AATGATGCAATTTCCTGAGCATGGAATGTTCGAAAAAACACTCAAAGTAATGGATCATCTTGAAT
15584610 ACTAAATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATC
646 ACTAAATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATC
* * *
15584675 CAAGTAAAAAGAGAGAAACATTTCTCACATAAATAAGTTTTTAATTCAAAATCAAAACCTTGTTT
711 CAAGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTT
*
15584740 ACAAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGTAAAATTT
776 ACAAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTT
* * *
15584805 ATGCATGGAACTAAACGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAATTCGTAAAAGTT
841 CTGCATGGAACTAAACATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT
*
15584870 TGGCAAGTTTGGAAGTTTGAAGAAATGGGTCATTTTGCTTGC
906 TGGCAAGTTTGGAAGTTCGAAGAAATGGGTCATTTTGCTTGC
*
15584912 TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGAA
1 TTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGAA
* * * * * *
15584977 CCAAGAGGGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAATACCAAATCTTGTTTACAAAA
66 CCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAA
*
15585042 TGAAAAGTTATTAGACCAAATGAAGCGATTTTTCGCGAACATGGAATGTTCGAAAAATTAATGAA
131 TGAAAA-TTATTAGACCAAATGAAGCGATTTTTCG-GAGCATGGAATGTTCGAAAAATTAATGAA
* * *
15585107 AGGAACTGATCATCTTGAATACTTTGAGGAACCGAAGTAATAAAAGAACTCGTAAAA-TTTTACA
194 AGGAACTGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACA
*
15585171 AGTTTGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
259 AGTTCGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* * * *
15585236 AGACAAAAATTTGTTCACAAAATAATAAATTGTTTAGACCAAATGATGCAATTTCCCAAGCATAG
324 AGACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCC-AGCATAG
*
15585301 ATTGTTCAAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAA
388 ATTGTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAA
* * * *
15585366 AATAACTCGTAAAAGTTCAACAAGTTCAGAGGTTTGTCCAGGAACCAAGAGAGAAACAATTCTCA
453 AAGAACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * *
15585431 CGTCAATAAGTTTTTAATTCAAAGACAAAGTCTTCTTTACAAAATGATAAACTATTTAGACCAAA
518 CGTCAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAA
* * *
15585496 TGATGCAATATCCTGAGCATGCAATGTTCGAAAAAACACTCGAAGTAATGGATCATCTTGAATAC
583 TGATGCAATTTCCTGAGCATGGAATGTTCGAAAAAACACTCAAAGTAATGGATCATCTTGAATAC
* * *
15585561 ----TCTAAGTAATATAAGTTATAAACGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCA
648 TAAATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCA
* * * * *
15585622 AGTAAAAAGAGAGAAACAACTCTAACATAAATAATTTTTTAATACAAAAACAAAAACTTATTTAC
713 AGTAAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTAC
* * * *
15585687 AAAATGACAAATTAGTAAGGCCTGATGATGCTATTTCATGAGCATAGAATGTTTGAAAAATTTCT
778 AAAATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCT
* * * * *
15585752 GCATGGAACTGAACATCTTGAATACTTTAAGCAACCGAAGTTATAAAGGAACTCGTAAAATTTTG
843 GCATGGAACTAAACATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTG
15585817 GCAAGTTTG
908 GCAAGTTTG
15585826 TCCAAGAACC
Statistics
Matches: 2470, Mismatches: 304, Indels: 108
0.86 0.11 0.04
Matches are distributed among these distances:
945 241 0.10
948 16 0.01
949 496 0.20
950 946 0.38
951 11 0.00
952 2 0.00
953 1 0.00
957 1 0.00
958 1 0.00
959 16 0.01
960 15 0.01
961 15 0.01
962 15 0.01
964 6 0.00
965 5 0.00
966 7 0.00
968 2 0.00
969 4 0.00
970 2 0.00
971 3 0.00
972 1 0.00
973 15 0.01
974 127 0.05
975 221 0.09
976 297 0.12
977 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (947 bp):
TTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGAA
CCAAGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACAAAAACTTGTTTACAAAA
TGAAAATTATTAGACCAAATGAAGCGATTTTTCGGAGCATGGAATGTTCGAAAAATTAATGAAAG
GAACTGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
TTCGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
ACCAAAAGTTGTTTACAAAATAATAAACTGTTTAGACCAAATGATGCAATTTCCCAGCATAGATT
GTTCGAAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATGAAAAG
AACTCATAAAAGTTCAACAAGTTCAGAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
CAATAAGTTTTTAATTCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
TGCAATTTCCTGAGCATGGAATGTTCGAAAAAACACTCAAAGTAATGGATCATCTTGAATACTAA
ATTTAAGTAATAGAAGTTATAAATGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGT
AAAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAAACAAAAACTTGTTTACAAA
ATGACAAATTATTAAGGCCTGATGATGCGATTTCCTGAGCATAGAATGTTCGAAAAATTTCTGCA
TGGAACTAAACATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGGCA
AGTTTGGAAGTTCGAAGAAATGGGTCATTTTGCTTGC
Found at i:15585375 original size:216 final size:215
Alignment explanation
Indices: 15584911--15588646 Score: 3146
Period size: 216 Copynumber: 17.4 Consensus size: 215
15584901 ATTTTGCTTG
* * *
15584911 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* * * ** * *
15584976 ACCAAGAGGGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAATACCAAATCTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * * * **
15585041 ATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTCGCGAACATGGAATGTTCGAAAAATTAAT
130 ATAATAAACTAT-TTAGACCAAATGATGC-A-ATTTCCCGAGCATAGAATGTTCAAAAAATTGCT
* *
15585104 -GAAAGGAACT-GATCATCTTGAATA
192 CG-AA-GAAATGGATCGTCTTGAATA
* * * *
15585128 CTTTGAGGAACCGAAGTAATAAAAGAACTCGTAAAATTTTACAAGTTTGGAAGTTGGTCCAAGAA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAATTTGACAAGTTTGGAAGTTCGTCCAAGAA
* * *
15585193 CCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAATTTGTTCACAAAA
66 CCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
* * * *
15585258 TAATAAATTGTTTAGACCAAATGATGCAATTTCCCAAGCATAGATTGTTCAAAAAATTGCTCGAA
131 TAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGAA
15585323 GAAATGGATCGTCTTGAATA
196 GAAATGGATCGTCTTGAATA
* * ** ** * * *
15585343 CTTTAAGGAACCAAAGTTATGAAAATAACTCGTAAAAGTTCAACAAGTTCAGAGGTTTGTCCAGG
1 CTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAG
* * * *
15585408 AACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAGTCTTCTTTACA
64 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAA-ACTTGTTTACA
* * * **
15585472 AAATGATAAACTATTTAGACCAAATGATGCAATATCCTGAGCAT-GCAATGTTCGAAAAAA-CAC
128 AAATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAG-AATGTTC-AAAAAATTGC
* *
15585535 TCGAAGTAATGGATCATCTTGAATA
191 TCGAAGAAATGGATCGTCTTGAATA
* * *** * * * * * * *
15585560 CTCTAAGTAATATAAGTTATAAACGTACTCGTAAATGTTTTACAAGTTTCGATGTTCATCCAAGT
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-ATTTGACAAGTTTGGAAGTTCGTCCAAG-
* * * * * * * *
15585625 AA-AAAGAGAGAAACAACTCTAACATAAATAATTTTTTAATACAAAAACAAAAACTTATTTACAA
64 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAA
* * * * * * ** * ** ** *
15585689 AATGACAAATTAGTAAGGCCTGATGATGCTATTTCATGAGCATAGAATGTTTGAAAAATTTCT-G
129 AATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCG
* * * *
15585753 CATGGAACT-GAACATCTTGAATA
194 -A-AGAAATGGATCGTCTTGAATA
* * *
15585776 CTTTAAGCAACCGAAGTTATAAAGGAACTCGTAAAA--T------TTTGGCAAGTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAATTTGACAAGTTTGG-AAGTTCGTCCAAGA
* * * * * * *
15585833 ACCAACAAAGAAA-AATTCTCACGTAAATACGTTTTTAATTCAATGACCAAAAGTTGTTTAGAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * ** * * *
15585897 ATTATAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATAGAATGTT-AGAGAATTTGCTCG
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCA-AAAAATTGCTCG
* * *
15585961 AAGAAATGGATCATCTTGATTG
194 AAGAAATGGATCGTCTTGAATA
* * *
15585983 CTTTAAGGAACCAAAGTTATAAATGAACTCATAAAATTTTGACAAGTTTGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* * *
15586048 ACCAAGAGACAAACAATTCTCTCATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * **
15586113 GTAATAAACTGTTTAGATCAAATGATGCAATTTCCCGAGCATGGAATGTTCGGAAAAA-CACTCG
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTC-AAAAAATTGCTCG
* ** *
15586177 AAGGAATGGATTTTCCTGAATA
194 AAGAAATGGATCGTCTTGAATA
* ** * * * * * * *
15586199 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAATTCGGATGTTCGTCCAAGT
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-ATTTGACAAGTTTGGAAGTTCGTCCAAGA
* * * * *
15586264 ACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTTAAAGACAAAAACATGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * ** * *
15586329 ATGACAAATTATTAAGGCCAGATGATGCAATTTCATGAGCATAGAATGTTCAGAAAATTTCT-GA
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGA
* * *
15586393 ATGGAACT-GAACTTCTTGAATA
195 A--GAAATGGATCGTCTTGAATA
* * * ** * * *
15586415 CTTTAAGG-ACCAAAGTTAGAAAACAACTTATAAAAGTTTGGCAAGTTTGGAAGTTTGCCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* ** * *
15586479 ACCAAGAGAGAAAAAATTCTCATGTAAATAAGTTTTTAATTTAATGACCAAAACTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * *
15586544 ATGAA-AAATTATTAAGACCAAATGATGCGATTTTTCGCGAGCATGGAATGTTCGAAAAATTAG-
130 AT-AATAAACTATTTAGACCAAATGATGC-A-ATTTCCCGAGCATAGAATGTTCAAAAAATT-GC
* *
15586607 T-GAAAAGAACT-GATCATCTTGAATA
191 TCG--AAGAAATGGATCGTCTTGAATA
*
15586632 CTTTGAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* * *
15586697 ACCAAGACAGAAACAATTCTCAAATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * *
15586762 ATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCATAGATTGTTC----GATTGCTCGA
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGA
* *
15586823 AGAAATGGATTGTCATGAATA
195 AGAAATGGATCGTCTTGAATA
* * * * * * * ** * *
15586844 CTTTAAGGAACCAAAGTGATGGAAAGAACCCATAAAAGTTCAGCAAGTTCAGAGGTTCGTCCAGG
1 CTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAATTTGA-CAAGTTTGGAAGTTCGTCCAAG
* * ** * *
15586909 AACCATGACAGAAACAATTCTCATGTCAATAAGTTTTTGATTCAAAGA-CAAAATCTTGTTTACA
64 AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACA
* * * * ***
15586973 AAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATGGAATATTCAAAAAAACACTC
128 AAATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTC
* *
15587038 GAAGGAATGGATCGTCTCGAATA
193 GAAGAAATGGATCGTCTTGAATA
* ** * * * * * *
15587061 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAATTATTTTACAAGTTCGGATGTTCGTCCAAGT
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AATTTGACAAGTTTGGAAGTTCGTCCAAGA
* * * *
15587126 ACAAAGTGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAAGACAAAAACTTGTTTA-AAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * * ** * *
15587190 AAAGACAAATTATTAAGGCCAGATGATGCGATTTCCTAAGCATAGAATGTTCGAAAAATT--TCA
130 ATA-ATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCG
* *
15587253 AACTGGAACT-GAACGTCTTGAATA
194 AA---GAAATGGATCGTCTTGAATA
* * * * *
15587277 CTTAAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTATGAAAAGTTTGGAATTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* ** * * *
15587342 ACCAAGAGAGAAAAAATTCTCACGCAAATAAGTTTTTAATTCAAAGACCAAAAGTTTTTTAGAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * ** * * *
15587407 ATTACAAACTATTTAGATCAAAGGATGTGATTTCTCGAGCATGGAATGTT-AGAAAATTGCTCGA
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGA
** ** *
15587471 AGAAATGGATTTTCTTGCTTG
195 AGAAATGGATCGTCTTGAATA
* *
15587492 CTTTAA-GAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* ** * * *
15587556 ACAAAGACCGAAACCATTCTAACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * ** * * * **
15587621 ATGA-AAAGT-TATTAGACCAATTGAACCGATTTTTCTCGAGCATGGAATGTTCAAAAAATTAAT
130 ATAATAAACTAT-TTAGACCAAATGATGC-A-ATTTCCCGAGCATAGAATGTTCAAAAAATTGCT
*
15587684 -GAAAGGAA-GTGATCGTCTTGAATA
192 CG-AAGAAATG-GATCGTCTTGAATA
* * * *
15587708 CTATGAGGAACCGAATTTATAAAAGAACTCATAAAAATTTGACAAGTTTGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAATTTGACAAGTTTGGAAGTTCGTCCAAGA
* * *
15587773 ACCAAGAGAGAAACAATTCTGACATAAATAAGTTTTTAATTCAAAGACCAACAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * *
15587838 ATGATAAACTGTTTAGACCAAATGATGCGATTTCCCGATCCTAGAATGTTCGAAAAATTGCTCAA
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGA
* * *
15587903 AGGAATTGATCGGCTTGAATA
195 AGAAATGGATCGTCTTGAATA
* ** * * ** *** *
15587924 CTTTAGGGAAATGAAGTTATAAAAGAACTCTTCAAAGTTCAACAAGTTCATAGGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAATTTGACAAGTTTGGAAGTTCGTCCAAGA
* * * * *
15587989 ACCATGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTGAAAGA-CAAAATCTTATTTACAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAA-CTTGTTTACAA
* * * * * **
15588053 AATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAAA-CACTC
129 AATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTC-AAAAAATTGCTC
* *
15588117 GAAGGAATGGATCGTCTCGAATA
193 GAAGAAATGGATCGTCTTGAATA
* * ** * * * *
15588140 CTTTAAGTTGTAA---AGGTTATAAAAGTACTCGTGAATGTTTTACAAGTTCGGATGTTCATCCA
1 CTTTAAG--G-AACCGAAGTTATAAAAGAACTCGT-AAAATTTGACAAGTTTGGAAGTTCGTCCA
* * * * ** * *
15588202 AGTACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTCATTCAGAGATAAAAACTTGATGAC
62 AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTAC
* * * * * * *
15588267 ---A-AAT----TATTAAGGCCAGATAATGCGATTTCCTGAGCATTGAATGTTCGAAAAAATT--
127 AAAATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTC-AAAAAATTGC
* * * *
15588322 TTGAATGGAACT-GAACGTCTCGAATA
191 TCGAA--GAAATGGATCGTCTTGAATA
* * *
15588348 CTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTTGGAAGTTCGTCCAAGA
* * * * *
15588413 ACCAAGAGAGAAAAAATTATCTCATAAATAAGTTTTTAATTCAAAGACCAACAGTTGTTTACAAA
65 ACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
* * * * * * * *
15588478 ATGATAAACTGTTTAGACCAAATAATGCGATTTCTCGAGCACAGAATGTTCAGAAAATGGCTCGA
130 ATAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGA
*
15588543 AGGAATGGATCGTCTTGAATA
195 AGAAATGGATCGTCTTGAATA
* * *** *
15588564 CTTTAAGGATA-CGAAGTTATAAAAGAACTCTTAAAAGTTGAACAAGTTCATAGGTTCGTCCAAG
1 CTTTAAGGA-ACCGAAGTTATAAAAGAACTCGTAAAATTTG-ACAAGTTTGGAAGTTCGTCCAAG
*
15588628 AACCCAGAGAGAAACAATT
64 AACCAAGAGAGAAACAATT
15588647 GAAAGACAAA
Statistics
Matches: 2806, Mismatches: 608, Indels: 211
0.77 0.17 0.06
Matches are distributed among these distances:
205 2 0.00
206 5 0.00
207 139 0.05
208 169 0.06
209 3 0.00
210 1 0.00
211 8 0.00
212 44 0.02
213 147 0.05
214 122 0.04
215 272 0.10
216 1274 0.45
217 458 0.16
218 157 0.06
219 5 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAATTTGACAAGTTTGGAAGTTCGTCCAAGAA
CCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAA
TAATAAACTATTTAGACCAAATGATGCAATTTCCCGAGCATAGAATGTTCAAAAAATTGCTCGAA
GAAATGGATCGTCTTGAATA
Found at i:15585717 original size:433 final size:428
Alignment explanation
Indices: 15584911--15590270 Score: 4454
Period size: 433 Copynumber: 12.6 Consensus size: 428
15584901 ATTTTGCTTG
* *
15584911 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAATTCGTCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * * *
15584976 ACCAAGAGGGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAATACCAAATCTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA-GTTGTTTACAAA
* * * * **
15585041 ATGA-AAAGT-TATTAGACCAAATGAAGCGATTTTTCGC-GAACATGGAATGTTCGAAAAATTAA
130 ATGACAAACTAT-TTAGACCAAATGATGC-A-ATTTC-CTGAGCAT-GAATGTTCGAAAAATTGC
* * * *
15585103 T-GAAAGGAACT-GATCATCTTGAATACTTTGAGGAACCGAAGTAATAAAAGAACTCGTAAAA-T
190 TCG-AAGGAA-TGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGT
* *
15585165 TTTACAAGTTTGGAAGTTGGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
253 TTTACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA
* * * * * * *
15585230 ATTCAAAGACAAAAATTTGTTCACAAAATAATAAATTGTTTAGACCAAATGATGCAATTTCCCAA
318 ATTCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGA
* * *
15585295 GCATAGATTGTTCAAAAAATTGCTCGAAGAAATGGATCGTCTTGAATA
383 GCATAGAATGTTCGAAAAATTGCT-GAAGAACT-GATCGTCTTGAATA
* * ** * * * *
15585343 CTTTAAGGAACCAAAGTTATGAAAATAACTCGTAAAAGTTCAACAAGTTCAGAGGTTTGTCCAGG
1 CTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* *
15585408 AACCAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAGTCTTCTTTACA
65 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAG--TTGTTTACA
* * ***
15585472 AAATGATAAACTATTTAGACCAAATGATGCAATATCCTGAGCATGCAATGTTCGAAAAAACACTC
128 AAATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATG-AATGTTCGAAAAATTGCTC
* * * * * * * * *
15585537 GAAGTAATGGATCATCTTGAATACTCTAAGTAATATAAGTTATAAACGTACTCGTAAATGTTTTA
192 GAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTA
* * * * * * *
15585602 CAAGTTTCGATGTTCATCCAAGTAA-AAAGAGAGAAACAACTCTAACATAAATAATTTTTTAATA
257 CAAGTTTCGAAGTTCGTCCAAG-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * ** * **
15585666 CAAAAACAAAAACTTATTTACAAAATGACAAATTAGTAAGGCCTGATGATGCTATTTCATGAGCA
321 CAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGCA
* * * * *
15585731 TAGAATGTTTGAAAAATTTCTGCATGGAACTGAACATCTTGAATA
386 TAGAATGTTCGAAAAATTGCTG-A-AGAACTGATCGTCTTGAATA
* * * *
15585776 CTTTAAGCAACCGAAGTTATAAAGGAACTCGTAAAATTTTG----G--C--AAGTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * *
15585833 ACCAACAAAGAAA-AATTCTCACGTAAATACGTTTTTAATTCAATGACCAAAAGTTGTTTAGAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAA
* * * ** * * *
15585897 ATTATAAACTATTTAGACCAAAGGATGTGATTT-CTCGAGCATAGAATGTTAGAGAATTTGCTCG
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCT-GAGCAT-GAATGTTCGAAAAATTGCTCG
* * * * * *
15585961 AAGAAATGGATCATCTTGATTGCTTTAAGGAACCA-AAGTTATAAATGAACTCATAAAA-TTTTG
193 AAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTTT-
* * *
15586024 ACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGACAAACAATTCTCTCATAAATAAGTTTTTAATT
256 ACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * * * * * *
15586089 CAAAGACCAAAAGTTGTTTACAAAGTAATAAACTGTTTAGATCAAATGATGCAATTTCCCGAGCA
321 CAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGCA
* ** ** *
15586154 TGGAATGTTCGGAAAAA-CACTCGAAGGAA-TGGATTTTCCTGAATA
386 TAGAATGTTC-GAAAAATTGCT-GAA-GAACT-GATCGTCTTGAATA
* ** * * * * * *
15586199 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAAATGTTTTACAAATTCGGATGTTCGTCCAAGT
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * * **
15586264 ACAAAGAGAGAAACAATTCTCACATAAATAAGCTTTTAATTTAAAGACAAAAACATGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAAA
* * * * * *
15586329 ATGACAAATTATTAAGGCCAGATGATGCAATTTCATGAGCATAGAATGTTC-AGAAAATTTCT-G
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCAT-GAATGTTCGA-AAAATTGCTCG
* * * * * ** *
15586392 AATGGAACT-GAACTTCTTGAATACTTTAAGGACCA-AAGTTAGAAAACAACTTATAAAAGTTTG
193 AA-GGAA-TGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTT
* * * * * **
15586455 GCAAGTTTGGAAGTTTGCCCAAGAACCAAGAGAGAAAAAATTCTCATGTAAATAAGTTTTTAATT
256 ACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * * *
15586520 TAATGACCAAAACTTGTTTACAAAATGAAAAATTATTAAGACCAAATGATGCGATTTTTCGCGAG
321 CAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGC-A-ATTTCCCGAG
* *
15586585 CATGGAATGTTCGAAAAATTAG-TGAAAAGAACTGATCATCTTGAATA
384 CATAGAATGTTCGAAAAATT-GCTG--AAGAACTGATCGTCTTGAATA
* *
15586632 CTTTGAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* **
15586697 ACCAAGACAGAAACAATTCTCAAATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAA
* * * * *
15586762 ATAATAAACTGTTTAGACCAAATGATGCAATTTCCCGAGCATAGATTGTTCG----ATTGCTCGA
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCAT-GAATGTTCGAAAAATTGCTCGA
* * * * * * * *
15586823 AGAAATGGATTGTCATGAATACTTTAAGGAACCA-AAGTGATGGAAAGAACCCATAAAAG-TTCA
194 AGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTAT-AAAAGAACTCGTAAAAGTTTTA
* * * * ** * *
15586886 GCAAG-TTCAGAGGTTCGTCCAGGAACCATGACAGAAACAATTCTCATGTCAATAAGTTTTTGAT
257 -CAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * *
15586950 TCAAAGACAAAATCTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCCCGAGC
320 TCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGC
* * * *** *
15587015 ATGGAATATTCAAAAAAACACTCGAAGGAA-TGGATCGTCTCGAATA
385 ATAGAATGTTCGAAAAATTGCT-GAA-GAACT-GATCGTCTTGAATA
* ** * * * *
15587061 CTTTAAGTAATAGAAGTTATAAAAGTACTCGTAATTA-TTTTACAAGTTCGGATGTTCGTCCAAG
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAA-AAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * * * * * * *
15587125 TACAAAGTGAGAAACAATTCTCACATAAATAAATTTTTAATTCAAAGACAAAAACTTGTTTAAAA
65 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAGTTGTTTACAA
* * * * * * * *
15587190 AAAGACAAATTATTAAGGCCAGATGATGCGATTTCCTAAGCATAGAATGTTCGAAAAATT--TCA
129 AATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCAT-GAATGTTCGAAAAATTGCTCG
* * * *
15587253 AACTGGAACT-GAACGTCTTGAATACTTAAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTAT
193 AA--GGAA-TGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * * * **
15587317 GAAAAGTTTGGAATTTTGTCCAAGAACCAAGAGAGAAAAAATTCTCACGCAAATAAGTTTTTAAT
255 TACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
* * * * * * * * * ** *
15587382 TCAAAGACCAAAAGTTTTTTAGAAAATTACAAACTATTTAGATCAAAGGATGTGATTTCTCGAGC
320 TCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGC
* * * ** ** *
15587447 ATGGAATGTTAG-AAAATTGCTCGAAGAAATGGATTTTCTTGCTTG
385 ATAGAATGTTCGAAAAATTGCT-GAAGAACT-GATCGTCTTGAATA
* * *
15587492 CTTTAA-GAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTCGTCAAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* ** * * *
15587556 ACAAAGACCGAAACCATTCTAACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAA
* * ** * * * **
15587621 ATGA-AAAGT-TATTAGACCAATTGAACCGATTTTTCTCGAGCATGGAATGTTCAAAAAATTAAT
130 ATGACAAACTAT-TTAGACCAAATGATGC-AATTTCCT-GAGCAT-GAATGTTCGAAAAATTGCT
* * * * * *
15587684 -GAAAGGAA-GTGATCGTCTTGAATACTATGAGGAACCGAATTTATAAAAGAACTCATAAAAATT
191 CG-AAGGAATG-GATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTT
* * *
15587747 TGACAAGTTTGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTGACATAAATAAGTTTTTAA
254 TTACAAGTTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * * * * * * * *
15587812 TTCAAAGACCAACAGTTGTTTACAAAATGATAAACTGTTTAGACCAAATGATGCGATTTCCCGAT
319 TTCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAG
* * * *
15587877 CCTAGAATGTTCGAAAAATTGCTCAAAGGAATTGATCGGCTTGAATA
384 CATAGAATGTTCGAAAAATTGCT-GAA-GAACTGATCGTCTTGAATA
* ** * * ** ** *
15587924 CTTTAGGGAAATGAAGTTATAAAAGAACTCTTCAAAGTTCAACAAGTTCATAGGTTCGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * * * *
15587989 ACCATGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTGAAAGACAAAATCTTATTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA-GTTGTTTACAAA
* ***
15588054 ATGACAAACTATTTAGACCAAATGATGCGATTTTCC-GAGCATGGAATGTTCGAAAAAACACTCG
130 ATGACAAACTATTTAGACCAAATGATGC-AATTTCCTGAGCAT-GAATGTTCGAAAAATTGCTCG
* * * *
15588118 AAGGAATGGATCGTCTCGAATACTTTAAGTTGTAA-AG--GTTATAAAAGTACTCGTGAATGTTT
193 AAGGAATGGATCGTCTTGAATACTTTAAG--G-AACAGAAGTTATAAAAGAACTCGTAAAAGTTT
* * * * *
15588180 TACAAG-TTCGGATGTTCATCCAAGTACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTCA
255 TACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * * * * * *
15588244 TTCAGAGATAAAAACTTG--------ATGACAAATTATTAAGGCCAGATAATGCGATTTCCTGAG
319 TTCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAG
* * * *
15588301 CATTGAATGTTCGAAAAAATT-TTGAATGGAACTGAACGTCTCGAATA
384 CATAGAATGTTCG-AAAAATTGCTGAA--GAACTGATCGTCTTGAATA
* * * *
15588348 CTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * *
15588413 ACCAAGAGAGAAAAAATTATCTCATAAATAAGTTTTTAATTCAAAGACCAACAGTTGTTTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AGTTGTTTACAAA
* * * * * *
15588478 ATGATAAACTGTTTAGACCAAATAATGCGATTT-CTCGAGCACAGAATGTTC-AGAAAATGGCTC
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCT-GAGCA-TGAATGTTCGA-AAAATTGCTC
* **
15588541 GAAGGAATGGATCGTCTTGAATACTTTAAGGATAC-GAAGTTATAAAAGAACTCTTAAAAGTTGA
192 GAAGGAATGGATCGTCTTGAATACTTTAAGGA-ACAGAAGTTATAAAAGAACTCGTAAAAGTTTT
*
15588605 ACAAG-TTC-ATAGGTTCGTCCAAGAACCCAGAGAG--A-AA----CA-AT---T--G-------
256 ACAAGTTTCGA-A-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * * * * * *
15588648 ---AAAGACAAAAACTTGTTTACAAAGTAACAAAATATTAAGGCCAGATGATGCGATTTCCTGAG
319 TTCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAG
* * * *
15588710 CATAGAATGTTCGAAAAATTTCTGAATGGAACTAAACATCTTGAATA
384 CATAGAATGTTCGAAAAATTGCTGAA--GAACTGATCGTCTTGAATA
* * * * *
15588757 CTTTAAGAAACCGAAGTTTTAAAAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* * * *
15588822 ACCAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAGTTCAAAGTCCAAAAGTTGTTTAGAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAAA
* ** * * * *
15588887 ATTACAAACTATTTAGACCAAATGATGTGATTT-CTCGAGCATGGAATGGTAGAAAATTTGCTAG
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCT-GAGCAT-GAATGTTCGAAAAATTGCTCG
* * * * * * * * *
15588951 AAGAAATGGATCATCTTGATTGCTTTAAGTAACCGAAGTTATAAAAGAACCCATAAAAGTTTAAC
193 AAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTAC
* * * * * *
15589016 AA-ATTCGAAAGTTTGTCAAAGAACCAAGAGAGAAACCATTCTGACTTAAATAAGTTTTTAATTC
258 AAGTTTCG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC
* * *
15589080 AAAGACCAAAACTTGTTTACAAAATGTA-AAATTATTAAGACCAAATGATGCGATTTTTCGCGAG
322 AAAGACAAAAACTTGTTTACAAAATG-ACAAATTATTAAGACCAAATGATGC-A-ATTTCCCGAG
* * **
15589144 CATGGAATGTTCGGAAAATTAATGACATGAACTGATCGTCTTGAATA
384 CATAGAATGTTCGAAAAATTGCTGA-A-GAACTGATCGTCTTGAATA
* * * *
15589191 CTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTGGTCCAAGA
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
* ** * *
15589256 ACCAATAGAGAAACAATTCTCACAAAAATAAGTTTTTAAGTCAAAGACCAACAGTTGATTACAAA
66 ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA-AGTTGTTTACAAA
* * ** * * * * *
15589321 ATAATAAACTGCTTAGACCAAATGATGCGATTTCCAGAGCACAGAATGTTC-AGAAATTGCTCAA
130 ATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCA-TGAATGTTCGAAAAATTGCTCGA
* * * * **
15589385 ATGAATGAATCGTCTTGAATACTTTAGGGAAACA-AAGTTATAAAAGAACTCTTAAAAGTTCAAC
194 AGGAATGGATCGTCTTGAATACTTTAAGG-AACAGAAGTTATAAAAGAACTCGTAAAAGTTTTAC
** *
15589449 AAG-TTC-ATAGGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCATGTCAATAAGTTTTTAATT
258 AAGTTTCGA-A-GTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATT
* * * * *
15589512 CAAAGACAAAAACTTGTTTACAAGATGACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCA
321 CAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGCA
* * * *
15589577 TAAAATGTTTGAAAAATTTCTGAATGGAACTGAACGTCTTG-ATCA
386 TAGAATGTTCGAAAAATTGCTGAA--GAACTGATCGTCTTGAAT-A
* * *
15589622 CTTTAAGGAACCGAATTTATAAAAGAACTCGTAAAAGTTT-AGCAAGTTTGGAAGTTTGTCCAAG
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA-CAAGTTCGGAAGTTCGTCCAAG
* * * *
15589686 AACCAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAGTTCAAAGACCAAAAGTTATTTAGAA
65 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACAA
* * * * ** *
15589751 ATTTACAAACTATTTAGACTAAAGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTC
129 AATGACAAACTATTTAGACCAAATGATGCAATTTCCT-GAGCAT-GAATGTTCGAAAAATTGCTC
* * * * *
15589815 GAAGAAATGGATCATCTTGATTGCTTTAAGGAACCA-AAGTTATAAAAGAACTCGTAAAAATTTG
192 GAAGGAATGGATCGTCTTGAATACTTTAAGGAA-CAGAAGTTATAAAAGAACTCGTAAAAGTTT-
* *
15589879 T-CAAG-TTCGGAAGTTCGTCAAAGAACCAAGAGAG----AA---GC-C---------------A
255 TACAAGTTTC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* ** * * * *
15589919 TTCAAAGACAAAAACTTGTGTACAAAGCGACAAATTATTAAGGCCAGATGATGCTATTTCCTGAG
319 TTCAAAGACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAG
* * * * *
15589984 CATAGAATGTTCGAAAAATTTCTAAATGGAACTGAACATCTTGAATT
384 CATAGAATGTTCGAAAAATTGCTGAA--GAACTGATCGTCTTGAATA
* * *
15590031 CTTTAAGGAACCGAAGTTATAAAAGAACTTGTAAAAGTTTGGCAAGTTTC-GAAGTTTGTCCAAG
1 CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGGAAGTTCGTCCAAG
*
15590095 AACCAAGAGAGACAA-AATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
65 AACCAAGAGAGA-AACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTACA
* * **
15590159 AAATGACAAACTATATAGACCAAATGATGC-A-------AGCATGGAATGTACAGAAAAA-CACT
128 AAATGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCAT-GAATGTTC-GAAAAATTGCT
* * * *
15590215 CGAAGAAATGGATCGTCTTGAATACTTTAAGTAATAGAAGTTATAAAAGTACTCGT
191 CGAAGGAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGT
15590271 GAATATTTTA
Statistics
Matches: 4002, Mismatches: 752, Indels: 379
0.78 0.15 0.07
Matches are distributed among these distances:
400 1 0.00
401 75 0.02
402 6 0.00
408 10 0.00
409 552 0.14
410 10 0.00
411 3 0.00
412 1 0.00
413 1 0.00
416 3 0.00
417 3 0.00
420 1 0.00
421 3 0.00
422 16 0.00
423 295 0.07
424 316 0.08
425 13 0.00
426 1 0.00
428 8 0.00
429 232 0.06
430 135 0.03
431 673 0.17
432 644 0.16
433 740 0.18
434 254 0.06
435 6 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (428 bp):
CTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGA
ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAGTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCAATTTCCTGAGCATGAATGTTCGAAAAATTGCTCGAAG
GAATGGATCGTCTTGAATACTTTAAGGAACAGAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
TTTCGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
ACAAAAACTTGTTTACAAAATGACAAATTATTAAGACCAAATGATGCAATTTCCCGAGCATAGAA
TGTTCGAAAAATTGCTGAAGAACTGATCGTCTTGAATA
Found at i:15589040 original size:216 final size:215
Alignment explanation
Indices: 15588648--15590270 Score: 1311
Period size: 216 Copynumber: 7.7 Consensus size: 215
15588638 GAAACAATTG
* * * * * * * *
15588648 AAAGACAAAAACTTGTTTACAAAGTAACAAAATATTAAGGCCAGATGATGCGATTTCCTGAGCAT
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCAT
* * * * * * *
15588713 AGAATGTTCGAAAAATTT-CT-GAATGGAACT-AAACATCTTGAATACTTTAAGAAACCGAAGTT
65 GGAATGTTAG-AAAATTTGCTAGAA--GAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTT
* ** * *
15588775 TTAAAAGAACTCGTAAAAGTTTGGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAAAAATT
127 ATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATT
15588840 CTCACGTAAATAAGTTTTTAGTTC
192 CTCACGTAAATAAGTTTTTAGTTC
* * *
15588864 AAAGTCCAAAAGTTGTTTAGAAAATTACAAACTATTTAGACCAAATGATGTGATTTCTCGAGCAT
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCAT
* * * * *
15588929 GGAATGGTAGAAAATTTGCTAGAAGAAATGGATCATCTTGATTGCTTTAAGTAACCGAAGTTATA
65 GGAATGTTAGAAAATTTGCTAGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATA
* * * * * * *
15588994 AAAGAACCCATAAAAGTTTAACAAATTCGAAAGTTTGTCAAAGAACCAAGAGAGAAACCATTCTG
130 AAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
15589059 ACTTAAATAAGTTTTTAATTC
195 ACGTAAATAAGTTTTTAGTTC
* * *
15589080 AAAGACCAAAACTTGTTTACAAAATGTA-AAATTATTAAGACCAAATGATGCGATTTTTCGCGAG
1 AAAGACCAAAAGTTGTTTACAAAAT-TACAAACTATTTAGACCAAATGATGCGA--TTTC-CGAG
* * * * * *
15589144 CATGGAATGTTCGGAAAATTAATG--ACATGAACT-GATCGTCTTGAATACTTTGAGGAACCAAA
62 CATGGAATGTT-AGAAAATT--TGCTAGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAA
* * * *
15589206 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAGTTGGTCCAAGAACCAATAGAGAAACA
124 GTTATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACA
**
15589271 ATTCTCACAAAAATAAGTTTTTAAG-TC
189 ATTCTCACGTAAATAAGTTTTT-AGTTC
* * * * ** *
15589298 AAAGACCAACAGTTGATTACAAAATAATAAACTGCTTAGACCAAATGATGCGATTTCCAGAGCAC
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCAT
* * * * *
15589363 AGAATGTTCAG-AAA-TTGCTCA-AATG-AATGAATCGTCTTGAATACTTTAGGGAAACAAAGTT
65 GGAATGTT-AGAAAATTTGCT-AGAA-GAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTT
* * ** * *
15589424 ATAAAAGAACTCTTAAAAGTTCAACAAGTTCATAGGTTCGTCCAAGAACCAAGAGAGAAACAATT
127 ATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATT
* * *
15589489 CTCATGTCAATAAGTTTTTAATTC
192 CTCACGTAAATAAGTTTTTAGTTC
* * * * * * * *
15589513 AAAGACAAAAACTTGTTTACAAGATGACAAATTATTAAGGCCAGATGATGCGATTTCCTGAGCAT
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCAT
** * * * * * *
15589578 AAAATGTTTGAAAAATTT-CT-GAATGGAACT-GAACGTCTTG-ATCACTTTAAGGAACCGAATT
65 GGAATGTTAG-AAAATTTGCTAGAA--GAAATGGATCATCTTGAAT-ACTTTAAGGAACCAAAGT
* * *
15589639 TATAAAAGAACTCGTAAAAGTTTAGCAAGTTTGGAAGTTTGTCCAAGAACCAAGAGAGAAAAAAT
126 TATAAAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAAT
15589704 TCTCACGTAAATAAGTTTTTAGTTC
191 TCTCACGTAAATAAGTTTTTAGTTC
* * * * * *
15589729 AAAGACCAAAAGTTATTTAGAAATTTACAAACTATTTAGACTAAAGGATGTGATTTCTCGAGCAT
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTC-CGAGCAT
* * * *
15589794 GGAATGTTAGAAAAATTGCTCGAAGAAATGGATCATCTTGATTGCTTTAAGGAACCAAAGTTATA
65 GGAATGTTAGAAAATTTGCTAGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATA
* ** * * * * *
15589859 AAAGAACTCGTAAAAATTTGTCAAGTTCGGAAGTTCGTCAAAGAACCAAGAGAGAAGCCATTC-A
130 AAAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTC
* ** *
15589923 AAG-ACAA-AAACTTGT-G-T-
195 ACGTA-AATAAGTTTTTAGTTC
* * * * *
15589940 ----A-C-AAAG-CG---AC-AAA-T------TATTAAGGCCAGATGATGCTATTTCCTGAGCAT
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCC-GAGCAT
* * * * * *
15589987 AGAATGTTCGAAAAATTT-CTA-AATGGAACT-GAACATCTTGAATTCTTTAAGGAACCGAAGTT
65 GGAATGTTAG-AAAATTTGCTAGAA--GAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTT
* **
15590049 ATAAAAGAACTTGTAAAAGTTTGGCAAGTTTC-GAAGTTTGTCCAAGAACCAAGAGAGACAA-AA
127 ATAAAAGAACTCGTAAAAGTTTAACAAG-TTCGGAAGTTTGTCCAAGAACCAAGAGAGA-AACAA
* *
15590112 TTCTCACATAAATAAGTTTTTAATTC
190 TTCTCACGTAAATAAGTTTTTAGTTC
* *
15590138 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATATAGACCAAATGATGC-A------AGCATG
1 AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
* *** * * * *
15590196 GAATGTACAGAAAA-ACACTCGAAGAAATGGATCGTCTTGAATACTTTAAGTAA-TAGAAGTTAT
66 GAATGT-TAGAAAATTTGCTAGAAGAAATGGATCATCTTGAATACTTTAAGGAACCA-AAGTTAT
*
15590259 AAAAGTACTCGT
129 AAAAGAACTCGT
15590271 GAATATTTTA
Statistics
Matches: 1112, Mismatches: 228, Indels: 142
0.75 0.15 0.10
Matches are distributed among these distances:
192 3 0.00
193 115 0.10
194 17 0.02
195 6 0.01
197 1 0.00
199 1 0.00
200 2 0.00
201 1 0.00
202 1 0.00
203 1 0.00
204 4 0.00
205 5 0.00
206 1 0.00
207 5 0.00
208 56 0.05
209 6 0.01
212 3 0.00
213 1 0.00
214 12 0.01
215 194 0.17
216 485 0.44
217 16 0.01
218 160 0.14
219 14 0.01
221 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (215 bp):
AAAGACCAAAAGTTGTTTACAAAATTACAAACTATTTAGACCAAATGATGCGATTTCCGAGCATG
GAATGTTAGAAAATTTGCTAGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
AAGAACTCGTAAAAGTTTAACAAGTTCGGAAGTTTGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAGTTC
Found at i:15591496 original size:50 final size:49
Alignment explanation
Indices: 15591398--15591540 Score: 144
Period size: 50 Copynumber: 2.8 Consensus size: 49
15591388 TGGATTACTA
* * *
15591398 AATGCATGACTTGATTTAATGATGCAAACTTTAACAAACATGGGAGTTACAT
1 AATGCATGA-TAGATTT-ATGATGCAAA-TTTAACTAACATGGCAGTTACAT
* * *
15591450 AATGCATGATAGAATTTATGATGCATATTTAACTAACATGTCAGTTACTT
1 AATGCATGATAG-ATTTATGATGCAAATTTAACTAACATGGCAGTTACAT
* *
15591500 AATGCATG-TCATTATTTATGATGCAAACTTAACTAATCATG
1 AATGCATGAT-A-GATTTATGATGCAAATTTAACTAA-CATG
15591541 AGAGTTAATG
Statistics
Matches: 78, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
49 1 0.01
50 49 0.63
51 15 0.19
52 13 0.17
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (49 bp):
AATGCATGATAGATTTATGATGCAAATTTAACTAACATGGCAGTTACAT
Found at i:15591761 original size:17 final size:17
Alignment explanation
Indices: 15591730--15591762 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15591720 CAAACACTTA
15591730 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
15591747 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
15591763 AGTCCTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:15596324 original size:216 final size:216
Alignment explanation
Indices: 15595583--15597420 Score: 1972
Period size: 216 Copynumber: 8.5 Consensus size: 216
15595573 TTACTTAATT
* *
15595583 CAAGAGAGAAACAATTCTCACGTCAATAAGTTTTTAATTCAAAGA-CAAAAGCTTGTTTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTAGAAAA
* * * * * * **
15595647 TGACAAAGTATTTAGACCAAATGATGCGATTTTTCGAGCATGGAATATTCGCAAAAA-CACTCGA
65 TGACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAG-AAAAATTGCTCGA
** * * * * ** * * *
15595711 AGGAATGGATCGTCTTGAATACTTTAAGTAAGAGAAGTTATAAAAGTACTCGTAAATGTTTTACA
129 ACAAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
15595776 AGTTCGGATGTTTGTCCAAGTAA-
194 AGTTCGGAAGTTCGTCAAAG-AAC
* * * * ** * *
15595799 AAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTTAAAGACAAAAACCTGTTTACAAGAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* * * * * * * * * * *
15595864 GACAAATTATTAAGGCCAGATGATGCGATTTC-CTGAGGATAGAATG-TCGAAAAATTTTGAATG
66 GACAAACTATTTAGACCAAAGGATGTGATTTCTC-GAGCATGGAATGTTAGAAAAA--TTG-CTC
*
15595927 GAACTAAAT-G----TCTTGAATGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAA-TTTG
127 GAAC-AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT-
* * * *
15595986 GA-AAGTTTGGAATTTTGTCCAAGAAC
190 GACAAGTTCGGAAGTTCGTCAAAGAAC
* *
15596012 CAAGAGAGAAAAAATTCTCACGTAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTAGAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* * * *
15596077 TACAAACTACTTAGACAAAAGGATGTGATTTCTCGAGCATGGAATGATAGAAAAATTGCTCGAAC
66 GACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
* ** * *
15596142 AAATGTATCATCTTGATTGCTTTAAGGAATGGAAGTTATAGAAGAACTCGCAAAAGTTTGACAAG
131 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
15596207 TTCGGAAGTTCGTCAAAGAAC
196 TTCGGAAGTTCGTCAAAGAAC
* ** *
15596228 CAAGAGAGAAACCATTCTGGCATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* * * *
15596293 TACAAACTATTTAGACAAAAGGATATGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAG
66 GACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
* * * *
15596358 AAATGGATCATCTTGATTACTGTAACGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
131 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* *
15596423 TTCGAAAGTTCATCAAAGAAC
196 TTCGGAAGTTCGTCAAAGAAC
* * **
15596444 CAAGAGATAAACCATTCTGGCGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTAGAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* * * *
15596508 TACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTACTTGAAG
66 GACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
* *
15596573 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGCAAAAGTTTGACAAA
131 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
*
15596638 TTCGAAAGTTCGTCAAAGAAC
196 TTCGGAAGTTCGTCAAAGAAC
* **
15596659 C-A-AGAGAAACCATTCTGGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* *
15596722 TACAAACTATTTAGACCAAACGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
66 GACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
15596787 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
131 AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
*
15596852 TTCCGAAGTTCGTCAAAGAAC
196 TTCGGAAGTTCGTCAAAGAAC
* * * * *
15596873 CAAGAGAGAAACCATTCTGACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTATAAAAT
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
* * * * * * * * * **
15596938 GAAAAATTATTAAGACCAAATGATGCGATTTTTGGCGAGCATGGAACGTTCGGAAAATTAAT-GA
66 GACAAACTATTTAGACCAAAGGATGTGATTTCT--CGAGCATGGAATGTTAGAAAAATTGCTCGA
* ** * * * *
15597002 A-AGGAATAGATCGCCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGA
129 ACA--AATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGA
* * *
15597066 CAAGTTTGGAAGTTTGTCCAAGAAC
192 CAAGTTCGGAAGTTCGTCAAAGAAC
* * *
15597091 CAAGAGAGAAA-AATTTCTCACATAAATAAGTTTTTAATTCAAAGACCAATAGTTGTTTACAAAA
1 CAAGAGAGAAACAA-TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAA
* * * * * * * * *
15597155 TGATAAACTGTTTAGACCAAATGATGCGATTTCCCGACCATAGAATTTTCAG-AAAATTGCTTGA
65 TGACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTT-AGAAAAATTGCTCGA
** ** * * * * * * **
15597219 AGGAATGGATTGTCTTGAATACTTTAGGGAACCAAAGTTATGAAAAGAACCCATAAAAGTTCAAC
129 ACAAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAAAAGTTTGAC
* * * *
15597284 AAGTTCAGAGGTTCGTCCAGGAAC
193 AAGTTCGGAAGTTCGTCAAAGAAC
* * * * * *
15597308 CAACAGAGAAATAATTCTCACGTCAATAAGTTTTTAACTCAAAGA-CAAAATTTTGTTTACAAAA
1 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTAGAAAA
* * * * *
15597372 TGACAAAGTATTGAGTCCAAATGATGCGATTT-TCCGAGCATGGAATGTT
65 TGACAAACTATTTAGACCAAAGGATGTGATTTCT-CGAGCATGGAATGTT
15597421 CGTCTTGAAT
Statistics
Matches: 1405, Mismatches: 184, Indels: 65
0.85 0.11 0.04
Matches are distributed among these distances:
210 4 0.00
211 5 0.00
212 5 0.00
213 151 0.11
214 215 0.15
215 205 0.15
216 492 0.35
217 139 0.10
218 186 0.13
219 3 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAAT
GACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAC
AAATGGATCATCTTGATTGCTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
TTCGGAAGTTCGTCAAAGAAC
Found at i:15597971 original size:216 final size:215
Alignment explanation
Indices: 15597444--15598978 Score: 1759
Period size: 216 Copynumber: 7.1 Consensus size: 215
15597434 TTAAGTAATA
* * * * * *
15597444 GAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTCGGATGTTCGTCCAAGTAA-AAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCAAAG-AACCAAGAGAGA
* ** * ** * * *
15597508 AACAATTCTCA-CATAAATAAGTTTTTAATTCAAAGACAAAAACCTGTTTACAAAATGACAAATT
64 AACCATTCT-AGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACT
* * * * * * * * * ** * *
15597572 ATTAAGGCCAGATGATGCGATTTC-CTAAGGATAGAATGTTCG-AAAATTTTTTGAATAGAACT-
128 ATTTAGACCAAAGGATGTGATTTCTC-GAGCATGGAATGTTAGAAAAATTGCTCG-A-AGAAATG
* * * * * *
15597634 AAACATCTTGAATACTTTAAAGAACT
190 GATCATCTTGATTGCTTTAAGGAACC
* * * * *
15597660 GAAGTTATAAAAGAACTCGTAAAA-TTTGGCAAGTTTGGAATTTTGTCCAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAGTTCGTCAAAGAACCAAGAGAGAA
* * * *
15597724 GA-AATTCTCA-TGTAAATACGTTTTAAATTCAAAGACCAAAAGTTGTTTAAAAAATTACAAACT
65 -ACCATTCT-AGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACT
* *
15597787 ATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGATAGAAAAATTGCTCGAACAAATGGAT
128 ATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGAT
*
15597852 CATCTTGATTGCTTTAAGGAACG
193 CATCTTGATTGCTTTAAGGAACC
** *
15597875 GAAGTTATTGAAGAACTCGCAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCAAAGAACCAAGAGAGAA
* * *
15597940 ACCATTCTAGCGTAAATAAGTTTTAAATTCAAAGACCAAAACTTGTTTAGAAAATTACAAACTAT
65 ACCATTCTAGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTAT
15598005 TTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCA
130 TTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCA
*
15598070 TCTTGATTGCTTTAACGAACC
195 TCTTGATTGCTTTAAGGAACC
* * *
15598091 GAAGGTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAACCAATAGATAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCAAAGAACCAAGAGAGAA
*
15598156 ACCATTCTGGTGTAAATAAGTTTTTAATTCAAAGACC-AAAGTTGTTTAGAAAATTACAAACTAT
65 ACCATTCTAGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTAT
15598220 TTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCA
130 TTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCA
*
15598285 TCTTGATTGCTTTAAGGAAAC
195 TCTTGATTGCTTTAAGGAACC
*
15598306 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCCGAAGTTCGTCAACGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT-CGAAGTTCGTCAAAGAACCAAGAGAGAA
* * *
15598371 ACCATTCTGGGGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATTACAAACTAT
65 ACCATTCTAGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTAT
* *
15598436 TTAGACCAAAAGATGTGATTTCTCGAGCATGGAATGTTAGGAAAATTGCTCGAAGAAATGGATCA
130 TTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCA
*
15598501 TCTTGATTGCTTTAAGGGACC
195 TCTTGATTGCTTTAAGGAACC
*
15598522 GAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCCGAAGTTCGTCAAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT-CGAAGTTCGTCAAAGAACCAAGAGAGAA
* * * * * * *
15598587 ACCATTCT-GACGTAAATAAATTTTTAATTCAAAGACCAAAACTTGTTTATAAAATGAAAAATTA
65 ACCATTCTAG-TGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTA
* * * * ** * **
15598651 TTAAGACCAAATGATGCGATTTTTGGCGAGCATGGAATGTTCAG-AAAATTAAT-GAAAGGAACA
129 TTTAGACCAAAGGATGTGATTTCT--CGAGCATGGAATGTT-AGAAAAATTGCTCG-AAGAAATG
* *** *
15598714 GATCTTCTTGAACACTTTGAGGAACC
190 GATCATCTTGATTGCTTTAAGGAACC
* * * *
15598740 AAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTTGCAAGTTCGTCCAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCAAAGAACCAAGAGAGAA
** * * * * * *
15598805 ATAATTCTCA-TATAAATAAGTTTTTAATTCAAAGACCAATAGTTGTTTACAAAATGATAAACTG
65 ACCATTCT-AGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTA
* * ** * *
15598869 TTTAGACCAAATGATGCGATTTC-CTGAGCATAAAATTTTCAG-AAAATTGCTCGAAGGAATGGA
129 TTTAGACCAAAGGATGTGATTTCTC-GAGCATGGAATGTT-AGAAAAATTGCTCGAAGAAATGGA
* * * *
15598932 TCGTCTTGAATACTTTAGGGAACC
192 TCATCTTGATTGCTTTAAGGAACC
* *
15598956 AAAGTTATGAAAAGAACCCGTAA
1 GAAGTTAT-AAAAGAACTCGTAA
15598979 CTCAATGCTC
Statistics
Matches: 1162, Mismatches: 134, Indels: 45
0.87 0.10 0.03
Matches are distributed among these distances:
214 6 0.01
215 361 0.31
216 600 0.52
217 16 0.01
218 177 0.15
219 2 0.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (215 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCGTCAAAGAACCAAGAGAGAAA
CCATTCTAGTGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATTACAAACTATT
TAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGATCAT
CTTGATTGCTTTAAGGAACC
Found at i:15598235 original size:431 final size:427
Alignment explanation
Indices: 15597444--15598978 Score: 1794
Period size: 431 Copynumber: 3.6 Consensus size: 427
15597434 TTAAGTAATA
* * * * * *
15597444 GAAGTTATAAAAGTACTCGTAAATGTTTTACAAGTTCGGATGTTCGTCCAAGTAA-AAAGAGAGA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-GAAGTTCGTCAAAG-AACCAAGAGAGA
* * *
15597508 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGACAAAAACCTGTTTACAAAATGACAAATTA
64 AACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTA
* * * * * * ** * * * *
15597573 TTAAGGCCAGATGATGCGATTTCCTAAGGATAGAATGTTCGAAAATTTTTTGAATAGAACT-AAA
129 TTTAGACCAAATGATGCGATTTCCTGAGCATAGAATGTTAGAAAATTGCTCG-A-AGAAATGGAT
* * * * *
15597637 CATCTTGAATACTTTAAAGAACTGAAGTTATAAAAGAACTCGTAAAA-TTTGGCAAGTTTGGAAT
192 CATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG-TTCGAAG
* * * * * *
15597701 TTTGTCCAAGAACCAAGAGAGAAGA-AATTCTCATGTAAATACGTTTTAAATTCAAAGACCAAAA
256 TTCGTCAAAGAACCAAGAGAGAA-ACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAA
*
15597765 GTTGTTTAAAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGATAGA
320 GTTGTTTAAAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGA
15597830 AAAATTGCTCGAACAAATGGATCATCTTGATTGCTTTAAGGAAC
385 AAAATTGCTCGAA-AAATGGATCATCTTGATTGCTTTAAGGAAC
** *
15597874 GGAAGTTATTGAAGAACTCGCAAAAGTTTGACAAGTTCGAAAGTTCGTCAAAGAACCAAGAGAGA
1 -GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCAAAGAACCAAGAGAGA
* * * * *
15597939 AACCATTCT-AGCGTAAATAAGTTTTAAATTCAAAGACCAAAACTTGTTTAGAAAATTACAAACT
64 AACAATTCTCA-CATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACT
* * *
15598003 ATTTAGACCAAAGGATGTGATTT-CTCGAGCATGGAATGTTAGAAAAATTGCTCGAAGAAATGGA
128 ATTTAGACCAAATGATGCGATTTCCT-GAGCATAGAATGTTAG-AAAATTGCTCGAAGAAATGGA
* * * *
15598067 TCATCTTGATTGCTTTAACGAACCGAAGGTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAA
191 TCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AA
* * *
15598132 GTTCGTCAAAGAACCAATAGATAAACCATTCTGGTGTAAATAAGTTTTTAATTCAAAGACC-AAA
255 GTTCGTCAAAGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAA
*
15598196 GTTGTTTAGAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGA
320 GTTGTTTAAAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGA
15598261 AAAATTGCTCGAAGAAATGGATCATCTTGATTGCTTTAAGGAAAC
385 AAAATTGCTCGAA-AAATGGATCATCTTGATTGCTTTAAGG-AAC
*
15598306 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCCGAAGTTCGTCAACGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT-CGAAGTTCGTCAAAGAACCAAGAGAGAA
* **** * * * *
15598371 ACCATTCTGGGGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTATTTAGAAAATTACAAACTAT
65 ACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * *
15598436 TTAGACCAAAAGATGTGATTT-CTCGAGCATGGAATGTTAGGAAAATTGCTCGAAGAAATGGATC
130 TTAGACCAAATGATGCGATTTCCT-GAGCATAGAATGTTA-GAAAATTGCTCGAAGAAATGGATC
* * * *
15598500 ATCTTGATTGCTTTAAGGGACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCCGAAGT
193 ATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT-CGAAGT
* * *
15598565 TCGTCAAAGAACCAAGAGAGAAACCATTCTGACGTAAATAAATTTTTAATTCAAAGACCAAAACT
257 TCGTCAAAGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * * * * *
15598630 TGTTTATAAAATGAAAAATTATTAAGACCAAATGATGCGATTTTTGGCGAGCATGGAATGTTCAG
322 TGTTTAAAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCT--CGAGCATGGAATGTT-AG
** ** * *** *
15598695 -AAAATTAAT-GAAAGGAACAGATCTTCTTGAACACTTTGAGGAACC
384 AAAAATTGCTCGAAA--AATGGATCATCTTGATTGCTTTAAGGAA-C
* * * *
15598740 AAAGTTATAAAAGAACTCGTAAAATTTTGACAAGTTTGCAAGTTCGTCCAAGAACCAAGAGAGAA
1 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCG-AAGTTCGTCAAAGAACCAAGAGAGAA
* * * * * *
15598805 ATAATTCTCATATAAATAAGTTTTTAATTCAAAGACCAATAGTTGTTTACAAAATGATAAACTGT
65 ACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTAT
* * * *
15598870 TTAGACCAAATGATGCGATTTCCTGAGCATAAAATTTTCAGAAAATTGCTCGAAGGAATGGATCG
130 TTAGACCAAATGATGCGATTTCCTGAGCATAGAATGTT-AGAAAATTGCTCGAAGAAATGGATCA
* * *
15598935 TCTTGAATACTTTAGGGAACCAAAGTTATGAAAAGAACCCGTAA
194 TCTTGAATACTTTAAGGAACCGAAGTTAT-AAAAGAACTCGTAA
15598979 CTCAATGCTC
Statistics
Matches: 960, Mismatches: 119, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
430 11 0.01
431 578 0.60
432 117 0.12
433 6 0.01
434 230 0.24
435 18 0.02
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (427 bp):
GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCGTCAAAGAACCAAGAGAGAAA
CAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAACTTGTTTACAAAATGACAAACTATT
TAGACCAAATGATGCGATTTCCTGAGCATAGAATGTTAGAAAATTGCTCGAAGAAATGGATCATC
TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAGTTCGT
CAAAGAACCAAGAGAGAAACCATTCTGATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TAAAAAATTACAAACTATTTAGACCAAAGGATGTGATTTCTCGAGCATGGAATGTTAGAAAAATT
GCTCGAAAAATGGATCATCTTGATTGCTTTAAGGAAC
Found at i:15606099 original size:14 final size:14
Alignment explanation
Indices: 15606080--15606108 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15606070 TAATACCGAG
15606080 TTTAAAATCATATT
1 TTTAAAATCATATT
15606094 TTTAAAATCATATT
1 TTTAAAATCATATT
15606108 T
1 T
15606109 GAAAACATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAATCATATT
Found at i:15616661 original size:59 final size:59
Alignment explanation
Indices: 15616550--15616711 Score: 227
Period size: 60 Copynumber: 2.7 Consensus size: 59
15616540 ATACCCGGGA
* * * * * * *
15616550 GCAAAATGGTAATTTTAGTTGGAATTGGGTTAAAAATGGGATTTTTAGAAGTT-CGAGG
1 GCAAAATGGTAATTTTTGGTGAAATCGGGTTAAAAATGGGATTGTTAAAAGTTAAGAGG
*
15616608 GCAAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGGATTGTTAAAAGTTAAGGGG
1 GCAAAATGGTAATTTTTGGTGAAATCG-GGTTAAAAATGGGATTGTTAAAAGTTAAGAGG
15616668 GCAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGGATT
1 GCAAAATGGTAATTTTTGGTGAAATC-GGGTTAAAAATGGGATT
15616712 ATGGAAAGTT
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
58 23 0.25
59 24 0.26
60 45 0.48
61 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.32
Consensus pattern (59 bp):
GCAAAATGGTAATTTTTGGTGAAATCGGGTTAAAAATGGGATTGTTAAAAGTTAAGAGG
Found at i:15616791 original size:30 final size:30
Alignment explanation
Indices: 15616756--15616873 Score: 184
Period size: 30 Copynumber: 3.9 Consensus size: 30
15616746 AAGTTTTGGG
*
15616756 GGGTTAAAATGTAATTTTTAGAAAGTTTTG
1 GGGTTAAAATGTAATTTTTAGAAAGTTTTA
*
15616786 GGGTTAAAATATAATTTTTA-ACAAGTTTTA
1 GGGTTAAAATGTAATTTTTAGA-AAGTTTTA
* *
15616816 GGGTTAAAATGTTATATTTAGAAAGTTTTA
1 GGGTTAAAATGTAATTTTTAGAAAGTTTTA
15616846 GGGTTAAAATGTAATTTTTAGAAAGTTT
1 GGGTTAAAATGTAATTTTTAGAAAGTTT
15616874 AAGGACTTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
29 1 0.01
30 77 0.97
31 1 0.01
ACGTcount: A:0.36, C:0.01, G:0.19, T:0.43
Consensus pattern (30 bp):
GGGTTAAAATGTAATTTTTAGAAAGTTTTA
Found at i:15617576 original size:12 final size:11
Alignment explanation
Indices: 15617556--15617606 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
15617546 ATTTCCCTTC
15617556 CTTTTTCTTTT
1 CTTTTTCTTTT
15617567 CTTTTCTCTTTT
1 CTTTT-TCTTTT
*
15617579 -TTTATCTTTCT
1 CTTTTTCTTT-T
* *
15617590 CTCTTTATTTT
1 CTTTTTCTTTT
15617601 CTTTTT
1 CTTTTT
15617607 TAAAACTAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
10 5 0.16
11 15 0.47
12 12 0.38
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (11 bp):
CTTTTTCTTTT
Found at i:15617578 original size:17 final size:16
Alignment explanation
Indices: 15617558--15617605 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 16
15617548 TTCCCTTCCT
15617558 TTTTCTTTTCTTTTCTC
1 TTTT-TTTTCTTTTCTC
15617575 TTTTTTTATCTTTCTCTC
1 TTTTTTT-TCTTT-TCTC
*
15617593 TTTATTTTCTTTT
1 TTTTTTTTCTTTT
15617606 TTAAAACTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 4 0.14
17 14 0.50
18 10 0.36
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTTCTTTTCTC
Found at i:15618687 original size:17 final size:16
Alignment explanation
Indices: 15618675--15618740 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 16
15618665 TTAATTAATT
15618675 TTAAATTTAAATTCAAA
1 TTAAATTTAAATT-AAA
15618692 TTAAATTTAAACTTAAAA
1 TTAAATTTAAA-TT-AAA
**
15618710 GAAAAGTTTAAACTTAAA
1 TTAAA-TTTAAA-TTAAA
* *
15618728 CTAAATTAAAATT
1 TTAAATTTAAATT
15618741 TAATCATGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
16 2 0.05
17 16 0.39
18 14 0.34
19 9 0.22
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:15625857 original size:12 final size:12
Alignment explanation
Indices: 15625840--15625878 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
15625830 TTACAGAATC
*
15625840 ATAGGCTGATTT
1 ATAGGCTAATTT
*
15625852 ATAGGCTAATTA
1 ATAGGCTAATTT
*
15625864 ATAGGTTAATTT
1 ATAGGCTAATTT
15625876 ATA
1 ATA
15625879 TTGTATTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (12 bp):
ATAGGCTAATTT
Found at i:15631494 original size:48 final size:48
Alignment explanation
Indices: 15631433--15631642 Score: 368
Period size: 48 Copynumber: 4.4 Consensus size: 48
15631423 TTATGTATTT
15631433 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
1 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
15631481 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
1 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
* *
15631529 TTTGTTAAATGCATCTTTGTTTAATAATCTGTATCATTAAGTGTTTTG
1 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
* *
15631577 TTTGTTAAATGCATCTTTGTTTAGTAATCTGCAT-TATTAACTGTTTTG
1 TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCT-TTAAGTGTTTTG
15631625 TTTGTTAAATGCATCTTT
1 TTTGTTAAATGCATCTTT
15631643 ATTAAATGCC
Statistics
Matches: 155, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 155 1.00
ACGTcount: A:0.23, C:0.10, G:0.14, T:0.52
Consensus pattern (48 bp):
TTTGTTAAATGCATCTTTGTTTAATAATCTGCATCTTTAAGTGTTTTG
Done.