Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 78 of 144
Found at i:17348319 original size:32 final size:33
Alignment explanation
Indices: 17348276--17348338 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
17348266 TAGAGAAAAT
*
17348276 TTTTTTAGGCCCCTTAAAAA-TTGAAAAAATAA
1 TTTTTTAGGCCCCTTAAAAACTTAAAAAAATAA
* *
17348308 TTTTTTCGGCCCTTTAAAAACTTAAAAAAAT
1 TTTTTTAGGCCCCTTAAAAACTTAAAAAAAT
17348339 TTGGACCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (33 bp):
TTTTTTAGGCCCCTTAAAAACTTAAAAAAATAA
Found at i:17348351 original size:26 final size:27
Alignment explanation
Indices: 17348321--17348373 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
17348311 TTTCGGCCCT
*
17348321 TTAAAAACT-TAAAAAAATTTGGACCC
1 TTAAAAACTAAAAAAAAATTTGGACCC
17348347 TTAAAAACTAAAAAAAAATTTGGACCC
1 TTAAAAACTAAAAAAAAATTTGGACCC
17348374 CTTTCAATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 9 0.36
27 16 0.64
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.25
Consensus pattern (27 bp):
TTAAAAACTAAAAAAAAATTTGGACCC
Found at i:17357835 original size:32 final size:33
Alignment explanation
Indices: 17357771--17357845 Score: 107
Period size: 32 Copynumber: 2.2 Consensus size: 33
17357761 TAATCCCCAT
* *
17357771 TATTTAAAATATCATTATTGTTTTTATATGTTAAA
1 TATTTCAAATATCACTATTG--TTTATATGTTAAA
17357806 TATTTCAAATATCACTATTG-TTATATGTTAAA
1 TATTTCAAATATCACTATTGTTTATATGTTAAA
17357838 TATTTCAA
1 TATTTCAA
17357846 TTAATTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
32 20 0.53
35 18 0.47
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51
Consensus pattern (33 bp):
TATTTCAAATATCACTATTGTTTATATGTTAAA
Found at i:17360395 original size:13 final size:13
Alignment explanation
Indices: 17360377--17360419 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
17360367 CATTAAAAAT
17360377 ATATTTTTAATTA
1 ATATTTTTAATTA
17360390 ATA-TTTT-A-T-
1 ATATTTTTAATTA
17360399 ATATTTTTAATTA
1 ATATTTTTAATTA
17360412 ATATTTTT
1 ATATTTTT
17360420 TAAATTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 3 0.12
10 5 0.19
11 2 0.08
12 5 0.19
13 11 0.42
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATATTTTTAATTA
Found at i:17360402 original size:22 final size:22
Alignment explanation
Indices: 17360375--17360418 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
17360365 AACATTAAAA
17360375 ATATATTTTTAATTAATATTTT
1 ATATATTTTTAATTAATATTTT
17360397 ATATATTTTTAATTAATATTTT
1 ATATATTTTTAATTAATATTTT
17360419 TTAAATTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
ATATATTTTTAATTAATATTTT
Found at i:17364566 original size:30 final size:30
Alignment explanation
Indices: 17364525--17364603 Score: 124
Period size: 30 Copynumber: 2.6 Consensus size: 30
17364515 GGTGAATAAA
*
17364525 TTGCTCGCACAAGCTGACATTATATCAGAG-
1 TTGCTCACACAAGCTGACATTATATCA-AGT
17364555 TTGCTCACACAAGCTGACATTATATCAAGT
1 TTGCTCACACAAGCTGACATTATATCAAGT
*
17364585 TTGCTCACACAAACTGACA
1 TTGCTCACACAAGCTGACA
17364604 CATATTAGGT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 2 0.04
30 44 0.96
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACATTATATCAAGT
Found at i:17366291 original size:15 final size:15
Alignment explanation
Indices: 17366249--17366291 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
17366239 GTTTGGAAAA
*
17366249 TTGAAAAATTAAATG
1 TTGAAAAATTAAGTG
*
17366264 TTGAAAAAATAAGTG
1 TTGAAAAATTAAGTG
17366279 TTGAAAAATTAAG
1 TTGAAAAATTAAG
17366292 CACCGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.30
Consensus pattern (15 bp):
TTGAAAAATTAAGTG
Found at i:17372112 original size:18 final size:18
Alignment explanation
Indices: 17372085--17372119 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
17372075 ATGGATGTCC
*
17372085 ATCAACATCAAGATAAAG
1 ATCAACATCAAAATAAAG
*
17372103 ATCAAGATCAAAATAAA
1 ATCAACATCAAAATAAA
17372120 ATTTGGTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.14, G:0.09, T:0.17
Consensus pattern (18 bp):
ATCAACATCAAAATAAAG
Found at i:17372911 original size:16 final size:16
Alignment explanation
Indices: 17372890--17372920 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17372880 CATGTTTGCT
*
17372890 CTTTTTTTTAAATATG
1 CTTTTTTTAAAATATG
17372906 CTTTTTTTAAAATAT
1 CTTTTTTTAAAATAT
17372921 ATATATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.61
Consensus pattern (16 bp):
CTTTTTTTAAAATATG
Found at i:17376218 original size:16 final size:15
Alignment explanation
Indices: 17376197--17376228 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
17376187 ATATGCAGTT
17376197 AAAAAAATTTAGGGAA
1 AAAAAAATTT-GGGAA
17376213 AAAAAAATTTGGGAA
1 AAAAAAATTTGGGAA
17376228 A
1 A
17376229 CCCACAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (15 bp):
AAAAAAATTTGGGAA
Found at i:17382038 original size:2 final size:2
Alignment explanation
Indices: 17382031--17382094 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
17382021 CGTTGAGTTC
17382031 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17382073 AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT
17382095 GCATGCATAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17394822 original size:21 final size:22
Alignment explanation
Indices: 17394798--17394860 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
17394788 TTAGTTAATG
17394798 AAAATATG-CAGAATTTTAACA
1 AAAATATGACAGAATTTTAACA
*
17394819 AAAATGTGACCAGAATTTTAACA
1 AAAATATGA-CAGAATTTTAACA
* *
17394842 AAAATGTGACCATAATTTT
1 AAAATATGA-CAGAATTTT
17394861 TTATTTGATG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.18
23 31 0.82
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (22 bp):
AAAATATGACAGAATTTTAACA
Found at i:17394861 original size:24 final size:23
Alignment explanation
Indices: 17394806--17394860 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
17394796 TGAAAATATG
17394806 CAGAATTTTAACAAAAATGTGAC
1 CAGAATTTTAACAAAAATGTGAC
17394829 CAGAATTTTAACAAAAATGTGAC
1 CAGAATTTTAACAAAAATGTGAC
*
17394852 CATAATTTT
1 CAGAATTTT
17394861 TTATTTGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31
Consensus pattern (23 bp):
CAGAATTTTAACAAAAATGTGAC
Found at i:17398121 original size:77 final size:75
Alignment explanation
Indices: 17398020--17398277 Score: 229
Period size: 76 Copynumber: 3.4 Consensus size: 75
17398010 TTATTTAATT
* * *
17398020 TTAATTCTTATTTGGAAACTAAATCAGAGTCAAATCTGTTAAACGATGAGAATAAATCCCGAAAC
1 TTAATTCTTATTTGAAAACAAAATCA-AATCAAATCTGTTAAACGA-GAGAATAAATCCCGAAAC
17398085 AGAATTATTCAA
64 AGAATTATTCAA
** * * * * * *
17398097 TTAATTCTTATTTGAAAACAAAATCCAAATCATTTCTGTTGAATGACAAAATAAATCTCGAAGCA
1 TTAATTCTTATTTGAAAACAAAAT-CAAATCAAATCTGTTAAACGAGAGAATAAATCCCGAAACA
17398162 GAATTATTCAA
65 GAATTATTCAA
* * * *
17398173 TTAATTATTA--T-AAAATCCAAATATAAAATAAAATCTGTTAAACG-GCGGCAATAAATCCCGA
1 TTAATTCTTATTTGAAAA--CAAA-ATCAAATCAAATCTGTTAAACGAG-AG-AATAAATCCCGA
*
17398234 AACAGATTTATTCAA
61 AACAGAATTATTCAA
* *
17398249 CTTAATT-TTATTTTGGAAACAAAACCAAA
1 -TTAATTCTTA-TTTGAAAACAAAATCAAA
17398278 ATAGAATAAA
Statistics
Matches: 143, Mismatches: 27, Indels: 22
0.74 0.14 0.11
Matches are distributed among these distances:
73 4 0.03
74 1 0.01
75 18 0.13
76 64 0.45
77 46 0.32
78 6 0.04
79 1 0.01
80 3 0.02
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (75 bp):
TTAATTCTTATTTGAAAACAAAATCAAATCAAATCTGTTAAACGAGAGAATAAATCCCGAAACAG
AATTATTCAA
Found at i:17398643 original size:28 final size:27
Alignment explanation
Indices: 17398588--17398645 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
17398578 AAAACATCAT
* *
17398588 ATCTGAAAACCAAATTAATTAAACAAG
1 ATCTGAAAACCAAATAAAATAAACAAG
* *
17398615 ATCTTAAAACCAAAATAAAATAAAGAAG
1 ATCTGAAAACC-AAATAAAATAAACAAG
17398643 ATC
1 ATC
17398646 GAATTTTATG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (27 bp):
ATCTGAAAACCAAATAAAATAAACAAG
Found at i:17399042 original size:32 final size:32
Alignment explanation
Indices: 17399001--17399090 Score: 162
Period size: 32 Copynumber: 2.8 Consensus size: 32
17398991 AGAAACCTTT
*
17399001 AAATCAATTTGATTAGAATCAAATCAAATCGA
1 AAATCAATTTGATTGGAATCAAATCAAATCGA
17399033 AAATCAATTTGATTGGAATCAAATCAAATCGA
1 AAATCAATTTGATTGGAATCAAATCAAATCGA
*
17399065 AAATCAATTTAATTGGAATCAAATCA
1 AAATCAATTTGATTGGAATCAAATCA
17399091 GATTGATATA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.29
Consensus pattern (32 bp):
AAATCAATTTGATTGGAATCAAATCAAATCGA
Found at i:17402154 original size:15 final size:16
Alignment explanation
Indices: 17402129--17402167 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
17402119 TTATTAATGA
17402129 TATTCTTTATTATTAT
1 TATTCTTTATTATTAT
*
17402145 TATT-TTTATTTTTAT
1 TATTCTTTATTATTAT
*
17402160 TATACTTT
1 TATTCTTT
17402168 TCTATTCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TATTCTTTATTATTAT
Found at i:17402168 original size:18 final size:18
Alignment explanation
Indices: 17402138--17402194 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 18
17402128 ATATTCTTTA
*
17402138 TTATTATTA-TTTTTATTT
1 TTATTA-TACTTTTTATTC
17402156 TTATTATACTTTTCTATTC
1 TTATTATACTTTT-TATTC
* *
17402175 TAATTAAACTTTTTGATTC
1 TTATTATACTTTTT-ATTC
17402194 T
1 T
17402195 AATAAAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
17 2 0.06
18 11 0.33
19 20 0.61
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.65
Consensus pattern (18 bp):
TTATTATACTTTTTATTC
Found at i:17402180 original size:19 final size:19
Alignment explanation
Indices: 17402158--17402197 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
17402148 TTTTATTTTT
*
17402158 ATTATACTTTTCT-ATTCTA
1 ATTAAACTTTT-TGATTCTA
17402177 ATTAAACTTTTTGATTCTA
1 ATTAAACTTTTTGATTCTA
17402196 AT
1 AT
17402198 AAAAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.30, C:0.12, G:0.03, T:0.55
Consensus pattern (19 bp):
ATTAAACTTTTTGATTCTA
Found at i:17403205 original size:15 final size:15
Alignment explanation
Indices: 17403181--17403214 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
17403171 GATCTTTTTG
* *
17403181 ACATTCTAATTCCGT
1 ACATTATAATTCCAT
17403196 ACATTATAATTCCAT
1 ACATTATAATTCCAT
17403211 ACAT
1 ACAT
17403215 AGACATAACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (15 bp):
ACATTATAATTCCAT
Found at i:17411378 original size:15 final size:16
Alignment explanation
Indices: 17411346--17411385 Score: 57
Period size: 14 Copynumber: 2.6 Consensus size: 16
17411336 TATATCAAAC
17411346 AAATTTTATAAGTATTT
1 AAATTTT-TAAGTATTT
17411363 AAATTTTTAA-TATTT
1 AAATTTTTAAGTATTT
17411378 -AATTTTTA
1 AAATTTTTA
17411386 GCACTTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.35
15 5 0.22
16 3 0.13
17 7 0.30
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
AAATTTTTAAGTATTT
Found at i:17415217 original size:56 final size:56
Alignment explanation
Indices: 17415129--17415313 Score: 194
Period size: 57 Copynumber: 3.2 Consensus size: 56
17415119 TTAATATAAT
* * * *
17415129 ATTTGGTATTTAAATTTGATATATTTTT-TAATTTGGTATTAAATTTTTTTGACTCA
1 ATTTGGTACTTAAACTTGACAT-TTTTTCTAATTTGATATTAAATTTTTTTGACTCA
* *
17415185 ATTTAGTACTTAAACTTGACATTTTTTCTAATTTGATATCTAAATTTTTTTGACCCA
1 ATTTGGTACTTAAACTTGACATTTTTTCTAATTTGATAT-TAAATTTTTTTGACTCA
* * * * * *
17415242 ATTTGGTA-TTGAAGTTGTCATTTTTTTCTAATTTGATACTTAAGCTTTTTTTAGATTTA
1 ATTTGGTACTTAAACTTGACA-TTTTTTCTAATTTGATA-TTAA-ATTTTTTT-GACTCA
17415301 ATTTGGTACTTAA
1 ATTTGGTACTTAA
17415314 GTTTATTAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
55 5 0.05
56 37 0.35
57 43 0.40
58 8 0.07
59 11 0.10
60 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.11, T:0.54
Consensus pattern (56 bp):
ATTTGGTACTTAAACTTGACATTTTTTCTAATTTGATATTAAATTTTTTTGACTCA
Found at i:17415550 original size:31 final size:31
Alignment explanation
Indices: 17415514--17415603 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 31
17415504 GGGCCCCAAA
*
17415514 AAGTTTAAGTA-TCAACTTAAAAAAAAGTGTC
1 AAGTTTAAGTACT-AAATTAAAAAAAAGTGTC
* **
17415545 AAGTTTAGGTACTAAATTAGGAAAAAGTGTC
1 AAGTTTAAGTACTAAATTAAAAAAAAGTGTC
* *
17415576 AAGTTTAAATACCAAATTGGAAAAAAAA
1 AAGTTTAAGTACTAAATT--AAAAAAAA
17415604 AATTTAGGTA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
31 40 0.85
32 1 0.02
33 6 0.13
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.27
Consensus pattern (31 bp):
AAGTTTAAGTACTAAATTAAAAAAAAGTGTC
Found at i:17415615 original size:89 final size:89
Alignment explanation
Indices: 17415460--17415638 Score: 211
Period size: 89 Copynumber: 2.0 Consensus size: 89
17415450 AAAAAAAAAA
* **** *
17415460 TTAGGTATCAAATTAGAAAAAAGAGTCAAGTTTAGTACCAAATTGGGCCCCAAAAAGTTTAAGTA
1 TTAGGTATCAAATTAGAAAAAAGAGTCAAGTTTAATACCAAATTGGGAAAAAAAAAATTTAAGTA
* *
17415525 TCAACTTAA-AAAAAAGTGTCAAGT
66 TCAAATTAAGAAAAAA-TATCAAGT
* * *
17415549 TTAGGTA-CTAAATTAGGAAAAAGTGTCAAGTTTAAATACCAAATT-GGAAAAAAAAAATTTAGG
1 TTAGGTATC-AAATTAGAAAAAAGAGTCAAGTTT-AATACCAAATTGGGAAAAAAAAAATTTAAG
17415612 TATCAAATTAAGAAAAAATATCAAGT
64 TATCAAATTAAGAAAAAATATCAAGT
17415638 T
1 T
17415639 CAGATACCAA
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
88 1 0.01
89 59 0.78
90 16 0.21
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (89 bp):
TTAGGTATCAAATTAGAAAAAAGAGTCAAGTTTAATACCAAATTGGGAAAAAAAAAATTTAAGTA
TCAAATTAAGAAAAAATATCAAGT
Found at i:17418488 original size:6 final size:6
Alignment explanation
Indices: 17418477--17418510 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
17418467 TAAAAAATGA
17418477 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAA
17418511 TTTTATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
TAAAAT
Found at i:17422382 original size:30 final size:30
Alignment explanation
Indices: 17422346--17422408 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
17422336 ATATGACCTA
*
17422346 AAAATTACAATTAACACACCACAAAATGTG
1 AAAATTACAATGAACACACCACAAAATGTG
*
17422376 AAAATTACAATGAACACACCACGAAATGTG
1 AAAATTACAATGAACACACCACAAAATGTG
17422406 AAA
1 AAA
17422409 TCAACTCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.54, C:0.19, G:0.10, T:0.17
Consensus pattern (30 bp):
AAAATTACAATGAACACACCACAAAATGTG
Found at i:17422971 original size:26 final size:26
Alignment explanation
Indices: 17422941--17422991 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
17422931 AATGTCATCT
*
17422941 GCTCAAGGCCTGCTATATAATCACCG
1 GCTCAAGGCCTACTATATAATCACCG
*
17422967 GCTCAAGGCTTACTATATAATCACC
1 GCTCAAGGCCTACTATATAATCACC
17422992 TTTTTTCTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
GCTCAAGGCCTACTATATAATCACCG
Found at i:17425022 original size:158 final size:158
Alignment explanation
Indices: 17424734--17425023 Score: 454
Period size: 158 Copynumber: 1.8 Consensus size: 158
17424724 ATCTCGAGAT
*
17424734 TTACATGTTATATGGGTGCTACTCGTAGATGTCCTACCGATGGATGAGATCCAACATATGTTACG
1 TTACAAGTTATATGGGTGCTACTCGTAGATGTCCTACCGATGGATGAGATCCAACATATGTTACG
* * * *
17424799 GATTCTCCACAGCTCGTGTGAGCCGCATCGTGTAGCCTAACATCTCGACCTACAGCTCGTGTGAG
66 GATTCTACACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCCACAGCTCATGTGAG
17424864 CAGGTTCACTTCACAGCTCGTGTGAGCA
131 CAGGTTCACTTCACAGCTCGTGTGAGCA
** * * * ** *
17424892 TTACAAGTTATATGGGTGCTGGTCTTAGATGTTCTACCGATGGCTGAGATCCGGCATATGTTATG
1 TTACAAGTTATATGGGTGCTACTCGTAGATGTCCTACCGATGGATGAGATCCAACATATGTTACG
*
17424957 GATTCTACACAGCTCGTGTGAGCAGCTTCGTGTAGCCTAACATCTCGACCCACAGCTCATGTGAG
66 GATTCTACACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCCACAGCTCATGTGAG
17425022 CA
131 CA
17425024 AACCCATTTC
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
158 118 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (158 bp):
TTACAAGTTATATGGGTGCTACTCGTAGATGTCCTACCGATGGATGAGATCCAACATATGTTACG
GATTCTACACAGCTCGTGTGAGCAGCATCGTGTAGCCTAACATCTCGACCCACAGCTCATGTGAG
CAGGTTCACTTCACAGCTCGTGTGAGCA
Found at i:17433113 original size:2 final size:2
Alignment explanation
Indices: 17433106--17433150 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
17433096 GTGGAAGCTA
*
17433106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17433148 AT A
1 AT A
17433151 CATGAATTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:17434082 original size:132 final size:132
Alignment explanation
Indices: 17433840--17434097 Score: 390
Period size: 132 Copynumber: 2.0 Consensus size: 132
17433830 GGATTTACAT
* *
17433840 GTTATATGGGTGCTGGTCTTAGATGTCCTACCGATGGCTGAGATCCGACATTTGTTACGGATTCT
1 GTTATATGGGTACTGGTCTTAGATGTCCTACCGATGGCTGAGATCCGACATATGTTACGGATTCT
* * *
17433905 CCACATCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCAACCCATAGCTCGTGTGAGCATTAA
66 CCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCAACCCACAGCTCATGTGAGCATTAA
17433970 AA
131 AA
* * ** **
17433972 GTTATATGGGTACTGGTCTTAGATGTTCTACCGATGGCTGAGATCTGGTATATGTTGTGGATTCT
1 GTTATATGGGTACTGGTCTTAGATGTCCTACCGATGGCTGAGATCCGACATATGTTACGGATTCT
* * *
17434037 CCACAGCTCGTGTGAGCAGCATCGTGTAGCCTCACATCTCGACCCACAGCTCATGTGAGCA
66 CCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCAACCCACAGCTCATGTGAGCA
17434098 AACCCATGTC
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 112 1.00
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.30
Consensus pattern (132 bp):
GTTATATGGGTACTGGTCTTAGATGTCCTACCGATGGCTGAGATCCGACATATGTTACGGATTCT
CCACAGCTCGTGTGAGCAGCATCATGTAGCCTAACATCTCAACCCACAGCTCATGTGAGCATTAA
AA
Found at i:17439584 original size:17 final size:17
Alignment explanation
Indices: 17439562--17439595 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17439552 GGTTGATATG
* *
17439562 GAAAATGTTATTGAAAT
1 GAAAATGCTATTAAAAT
17439579 GAAAATGCTATTAAAAT
1 GAAAATGCTATTAAAAT
17439596 AATGAGTGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.15, T:0.32
Consensus pattern (17 bp):
GAAAATGCTATTAAAAT
Found at i:17446766 original size:37 final size:37
Alignment explanation
Indices: 17446723--17446813 Score: 164
Period size: 37 Copynumber: 2.5 Consensus size: 37
17446713 TACTACGCGT
* *
17446723 CGATGAGGCATTGGGTGCCAATTTACTTCGGTTTAAC
1 CGATGAGACACTGGGTGCCAATTTACTTCGGTTTAAC
17446760 CGATGAGACACTGGGTGCCAATTTACTTCGGTTTAAC
1 CGATGAGACACTGGGTGCCAATTTACTTCGGTTTAAC
17446797 CGATGAGACACTGGGTG
1 CGATGAGACACTGGGTG
17446814 TCAACTCATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (37 bp):
CGATGAGACACTGGGTGCCAATTTACTTCGGTTTAAC
Found at i:17446996 original size:17 final size:17
Alignment explanation
Indices: 17446974--17447029 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
17446964 GGTTGATATG
17446974 GAAAATGTTATTGAAAT
1 GAAAATGTTATTGAAAT
* *
17446991 GAAAATGCTATTAAAAT
1 GAAAATGTTATTGAAAT
*
17447008 -AAAGA-GTCATATGAAAT
1 GAAA-ATGTTAT-TGAAAT
17447025 GAAAA
1 GAAAA
17447030 GTTTCTTGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 6 0.19
17 22 0.71
18 3 0.10
ACGTcount: A:0.54, C:0.04, G:0.16, T:0.27
Consensus pattern (17 bp):
GAAAATGTTATTGAAAT
Found at i:17447935 original size:16 final size:16
Alignment explanation
Indices: 17447893--17447936 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
17447883 TTTTTAATAT
*
17447893 TAACTTTTAAATTTCA
1 TAACTTTTATATTTCA
*
17447909 TAAATTTTATATTTCA
1 TAACTTTTATATTTCA
17447925 -AACTTTCTATAT
1 TAACTTT-TATAT
17447937 GCTTGTATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.52
Consensus pattern (16 bp):
TAACTTTTATATTTCA
Found at i:17452031 original size:2 final size:2
Alignment explanation
Indices: 17452024--17452049 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
17452014 ACAATCACAG
17452024 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
17452050 GAAAACATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17454088 original size:29 final size:29
Alignment explanation
Indices: 17454040--17454221 Score: 132
Period size: 30 Copynumber: 6.1 Consensus size: 29
17454030 TATTTTATTT
**
17454040 AAAAATTCAATTTTGAACCCCAAACTTTCC
1 AAAAATTTGATTTTG-ACCCCAAACTTTCC
** **
17454070 AAAAATTTGATTACGACCCCTAAACTTTTT
1 AAAAATTTGATTTTGACCCC-AAACTTTCC
* * *
17454100 GAAAATTTGATTTTGACCTCTAAACTTTCT
1 AAAAATTTGATTTTGACC-CCAAACTTTCC
* * **
17454130 AGAAATTTGATTTTGACCTTCAAACTTTTT
1 AAAAATTTGATTTTGACC-CCAAACTTTCC
* * * *
17454160 AGAAATTAGA-TTTGACCCTCGAACTTCCC
1 AAAAATTTGATTTTGACCC-CAAACTTTCC
* * *
17454189 AAAAATTTAATTTTGACACTAAACTTTCC
1 AAAAATTTGATTTTGACCCCAAACTTTCC
17454218 AAAA
1 AAAA
17454222 TTTCAGTTCT
Statistics
Matches: 119, Mismatches: 29, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
29 36 0.30
30 82 0.69
31 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (29 bp):
AAAAATTTGATTTTGACCCCAAACTTTCC
Found at i:17458795 original size:16 final size:17
Alignment explanation
Indices: 17458762--17458796 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
17458752 AAACTAAAAG
17458762 AAAGAAAAGAAAAAGAA
1 AAAGAAAAGAAAAAGAA
*
17458779 AAAGAAAA-AAGAAGAA
1 AAAGAAAAGAAAAAGAA
17458795 AA
1 AA
17458797 GTCAAGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAAGAAAAGAAAAAGAA
Found at i:17459680 original size:10 final size:9
Alignment explanation
Indices: 17459655--17459704 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
17459645 AATTTCACCT
*
17459655 AAAAAAAAT
1 AAAAAAAAG
*
17459664 AAGAAAAAG
1 AAAAAAAAG
*
17459673 AGAAAAAAG
1 AAAAAAAAG
*
17459682 AAAGAAAAG
1 AAAAAAAAG
17459691 AAAAGAAAAG
1 AAAA-AAAAG
17459701 AAAA
1 AAAA
17459705 GGAGAGGTCG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
9 24 0.73
10 9 0.27
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:17459692 original size:5 final size:5
Alignment explanation
Indices: 17459668--17459705 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
17459658 AAAAATAAGA
*
17459668 AAAAG AGAA- AAAAG -AAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
17459706 GAGAGGTCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 7 0.24
5 22 0.76
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:17462620 original size:29 final size:29
Alignment explanation
Indices: 17462527--17462660 Score: 117
Period size: 30 Copynumber: 4.5 Consensus size: 29
17462517 TTGTTTTATT
* *
17462527 TAAAAATTTAATTTTGACCCCTAAACTTTC
1 TAAAAATTTGATTTTAACCCC-AAACTTTC
* * *
17462557 TAGAAATTT-ACTGTTAACCTCTAAACTTTC
1 TAAAAATTTGA-TTTTAACC-CCAAACTTTC
*
17462587 CAAAAATTTGATTTTAACCCCAAACTTTC
1 TAAAAATTTGATTTTAACCCCAAACTTTC
* **
17462616 TAAAAATTAGATTTTGATGCCCAAACTTTC
1 TAAAAATTTGATTTT-AACCCCAAACTTTC
* * *
17462646 CAAAATTTTGGTTTT
1 TAAAAATTTGATTTT
17462661 GACTCCTTTT
Statistics
Matches: 84, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
29 23 0.27
30 59 0.70
31 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.40
Consensus pattern (29 bp):
TAAAAATTTGATTTTAACCCCAAACTTTC
Found at i:17464756 original size:20 final size:20
Alignment explanation
Indices: 17464728--17464765 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
17464718 GTTGGAGTCG
* *
17464728 TTGTGTCGGTAGATCTCTCC
1 TTGTATCGGTAGAACTCTCC
17464748 TTGTATCGGTAGAACTCT
1 TTGTATCGGTAGAACTCT
17464766 AAGGTTTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.39
Consensus pattern (20 bp):
TTGTATCGGTAGAACTCTCC
Found at i:17470988 original size:2 final size:2
Alignment explanation
Indices: 17470981--17471062 Score: 53
Period size: 2 Copynumber: 41.5 Consensus size: 2
17470971 ATACAGGATA
* * *
17470981 AT AT AT AT AT AT AT ACT AT AT AT AA AG A- AT AA AT -T AT AT AT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
17471022 AT AT A- AA AG AA AT AA AT CAT AT AT AT AT AT AT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT A
17471063 ATCTATAGAA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
1 3 0.05
2 57 0.89
3 4 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (2 bp):
AT
Found at i:17471024 original size:24 final size:25
Alignment explanation
Indices: 17470990--17471052 Score: 94
Period size: 24 Copynumber: 2.6 Consensus size: 25
17470980 AATATATATA
17470990 TATATACTATATATAAAG-AATAAAT
1 TATATA-TATATATAAAGAAATAAAT
17471015 TATATATATATA-AAAGAAATAAAT
1 TATATATATATATAAAGAAATAAAT
*
17471039 CATATATATATATA
1 TATATATATATATA
17471053 TTTATATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
23 4 0.11
24 24 0.69
25 7 0.20
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (25 bp):
TATATATATATATAAAGAAATAAAT
Found at i:17473022 original size:50 final size:50
Alignment explanation
Indices: 17472968--17473084 Score: 171
Period size: 50 Copynumber: 2.3 Consensus size: 50
17472958 TTGTGACTTT
* *
17472968 AATCTACCCCTCTATAGCTTTAGGTGAATGAGATTTGTCATTGCGGCTTC
1 AATCTACCCCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTC
* * *
17473018 AATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGGCTTT
1 AATCTACCCCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTC
**
17473068 AATCTATTCCTCTACAG
1 AATCTACCCCTCTACAG
17473085 GTTTTGGGGT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (50 bp):
AATCTACCCCTCTACAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTC
Found at i:17473103 original size:50 final size:50
Alignment explanation
Indices: 17472968--17473104 Score: 159
Period size: 50 Copynumber: 2.7 Consensus size: 50
17472958 TTGTGACTTT
* * * *
17472968 AATCTACCCCTCTATAGCTTTAGGTGAATGAGATTTGTCATTGCGGCTTC
1 AATCTACCCCTCTACAGCTTTAGGGGTATGAGATTTGCCATTGCGGCTTC
* * *
17473018 AATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGGCTTT
1 AATCTACCCCTCTACAGCTTTAGGGGTATGAGATTTGCCATTGCGGCTTC
** * *
17473068 AATCTATTCCTCTACAGGTTTTGGGGTAT-AGGATTTG
1 AATCTACCCCTCTACAGCTTTAGGGGTATGA-GATTTG
17473105 TCGTTCTATC
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 74 0.99
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (50 bp):
AATCTACCCCTCTACAGCTTTAGGGGTATGAGATTTGCCATTGCGGCTTC
Found at i:17480546 original size:21 final size:19
Alignment explanation
Indices: 17480521--17480564 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
17480511 AGTTAAATTA
17480521 ATATA-ATATATAGGATAAGAT
1 ATATATATATA-AGGA-AAG-T
17480542 ATATATATATAAGGAAAGT
1 ATATATATATAAGGAAAGT
17480561 ATAT
1 ATAT
17480565 GACGAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.23
20 3 0.14
21 9 0.41
22 5 0.23
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (19 bp):
ATATATATATAAGGAAAGT
Found at i:17480563 original size:19 final size:21
Alignment explanation
Indices: 17480521--17480564 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
17480511 AGTTAAATTA
17480521 ATATAATATATAGGATAAGAT
1 ATATAATATATAGGATAAGAT
17480542 ATAT-ATATATAAGGA-AAG-T
1 ATATAATATAT-AGGATAAGAT
17480561 ATAT
1 ATAT
17480565 GACGAATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.23
20 9 0.41
21 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (21 bp):
ATATAATATATAGGATAAGAT
Found at i:17482795 original size:20 final size:20
Alignment explanation
Indices: 17482772--17482810 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
17482762 TGAGGTGTGT
17482772 TTAATCCTTTTGGAATCCAC
1 TTAATCCTTTTGGAATCCAC
17482792 TTAATCCTTTTGGAATCCA
1 TTAATCCTTTTGGAATCCA
17482811 TACACTCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (20 bp):
TTAATCCTTTTGGAATCCAC
Found at i:17485978 original size:45 final size:45
Alignment explanation
Indices: 17485890--17486013 Score: 176
Period size: 45 Copynumber: 2.7 Consensus size: 45
17485880 AGTTATGTGT
*
17485890 GTGGCTTCAATCTACCCCTCTAGATTTAGGGGTAAAAGATTAGATG
1 GTGGCTTCAATCTACCTCTCTAGA-TTAGGGGTAAAAGATTAGATG
* *
17485936 GTGGCTTCAATCTACCTCTCTGGATTAGGGGTAAAAGGTTAGATG
1 GTGGCTTCAATCTACCTCTCTAGATTAGGGGTAAAAGATTAGATG
* * * *
17485981 ATGGCTTCAATTTGCCTCACTAGATTAGGGGTA
1 GTGGCTTCAATCTACCTCTCTAGATTAGGGGTA
17486014 GAATATTCCA
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
45 48 0.69
46 22 0.31
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (45 bp):
GTGGCTTCAATCTACCTCTCTAGATTAGGGGTAAAAGATTAGATG
Found at i:17486517 original size:49 final size:49
Alignment explanation
Indices: 17486463--17486624 Score: 211
Period size: 49 Copynumber: 3.3 Consensus size: 49
17486453 TTTTTGTTGC
* * *
17486463 GGCTTCAATCTTTCCCTCCACATTTCTAGGGTACAAGATTCGCCATTTT
1 GGCTTCAATCTTTCCCTCCATATTTCTAAGGTACAAGATTCGCCATTGT
* * * *
17486512 GGCTTCAATCTTTCCCTCCATATTTCTAAGTTATAAGATCCGCCATTGC
1 GGCTTCAATCTTTCCCTCCATATTTCTAAGGTACAAGATTCGCCATTGT
* * * *
17486561 GACTTCAATCTTTCCCTCCATATCTCTATGGTACAAGATTCGTCATTGT
1 GGCTTCAATCTTTCCCTCCATATTTCTAAGGTACAAGATTCGCCATTGT
17486610 -G-TTCAATCTTTCCCT
1 GGCTTCAATCTTTCCCT
17486625 TTACGTCTTT
Statistics
Matches: 97, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 14 0.14
49 83 0.86
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.38
Consensus pattern (49 bp):
GGCTTCAATCTTTCCCTCCATATTTCTAAGGTACAAGATTCGCCATTGT
Found at i:17487513 original size:10 final size:10
Alignment explanation
Indices: 17487498--17487536 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
17487488 CCTCGACCTC
17487498 TTCTTTTTTT
1 TTCTTTTTTT
*
17487508 TTCTTTTCTT
1 TTCTTTTTTT
17487518 TTC-TTTTTT
1 TTCTTTTTTT
*
17487527 CTCTTTTTTT
1 TTCTTTTTTT
17487537 GGGTGAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:17489415 original size:74 final size:74
Alignment explanation
Indices: 17489325--17489477 Score: 281
Period size: 74 Copynumber: 2.1 Consensus size: 74
17489315 GACATGGTCC
*
17489325 CTATCTCTAACCTGCCCTTAAGAGTGTTGAAGTCATTCCTCGTTTATTTCCAATTTTCTTTGGCG
1 CTATCTCTAACCTGCCCCTAAGAGTGTTGAAGTCATTCCTCGTTTATTTCCAATTTTCTTTGGCG
17489390 ATATTTTCT
66 ATATTTTCT
*
17489399 CTATCTCTGACCTGCCCCTAAGAGTGTTGAAGTCATTCCTCGTTTATTTCCAATTTTCTTTGGCG
1 CTATCTCTAACCTGCCCCTAAGAGTGTTGAAGTCATTCCTCGTTTATTTCCAATTTTCTTTGGCG
17489464 ATATTTTCT
66 ATATTTTCT
17489473 C-ATCT
1 CTATCT
17489478 TTGGATAGCC
Statistics
Matches: 77, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
73 4 0.05
74 73 0.95
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (74 bp):
CTATCTCTAACCTGCCCCTAAGAGTGTTGAAGTCATTCCTCGTTTATTTCCAATTTTCTTTGGCG
ATATTTTCT
Found at i:17496731 original size:19 final size:20
Alignment explanation
Indices: 17496703--17496740 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
17496693 TTCTTTATTG
*
17496703 TTATATATTTT-ATAATTTT
1 TTATAAATTTTAATAATTTT
17496722 TTATAAATTTTAATAATTT
1 TTATAAATTTTAATAATTT
17496741 CTACGGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATAAATTTTAATAATTTT
Found at i:17496862 original size:19 final size:19
Alignment explanation
Indices: 17496835--17496880 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
17496825 AAAAAAAATA
*
17496835 TTTTAATCTTCCATTTAAT
1 TTTTCATCTTCCATTTAAT
17496854 TTTTCATCTTCCATTTAAT
1 TTTTCATCTTCCATTTAAT
17496873 TTTTCATC
1 TTTTCATC
17496881 GCTTTTAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.22, C:0.20, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTCATCTTCCATTTAAT
Found at i:17497336 original size:18 final size:18
Alignment explanation
Indices: 17497313--17497352 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
17497303 CATTATGCCT
*
17497313 TTTTTTTTTAAAGTTAAA
1 TTTTTTATTAAAGTTAAA
**
17497331 TTTTTTATTAATTTTAAA
1 TTTTTTATTAAAGTTAAA
17497349 TTTT
1 TTTT
17497353 CGTATCTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTTTATTAAAGTTAAA
Found at i:17497399 original size:18 final size:18
Alignment explanation
Indices: 17497387--17497426 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
17497377 TAATTTTTAT
17497387 AATTTTAAGAATTTATAA
1 AATTTTAAGAATTTATAA
**
17497405 AATTTTAA-CTTTTATAA
1 AATTTTAAGAATTTATAA
17497422 AATTT
1 AATTT
17497427 CATTTTTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
AATTTTAAGAATTTATAA
Found at i:17501646 original size:18 final size:18
Alignment explanation
Indices: 17501603--17501646 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
17501593 AATTTTAATT
* *
17501603 TAATTAAAAATGAGTGTG
1 TAATTAAAAACGAATGTG
*
17501621 TAAATTAAATACGAATGTG
1 T-AATTAAAAACGAATGTG
17501640 TAATTAA
1 TAATTAA
17501647 TGGTGAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
TAATTAAAAACGAATGTG
Found at i:17502001 original size:57 final size:58
Alignment explanation
Indices: 17501871--17502051 Score: 183
Period size: 57 Copynumber: 3.1 Consensus size: 58
17501861 TTTCAAAGAA
* *
17501871 TTTAAGGTTAAAATGTAATTTT-GTAAAAATTTGAGGGCTAAAATATAATATTTAGAAAG
1 TTTAGGGTTAAAATGTAATTTTAG-GAAAATTT-AGGGCTAAAATATAATATTTAGAAAG
* * *
17501930 TTTAGGGTTAAAATGTAATTTTAGGAAACTTTAGGG-TAAAATGTGAT-TTTAGGAAAG
1 TTTAGGGTTAAAATGTAATTTTAGGAAAATTTAGGGCTAAAATATAATATTTA-GAAAG
* * * * * *
17501987 TTTGGGGGTT-AAATGTGATTTTAGGAAAGTTTAGGGGTCAAATATAAT-TTTAAAAGAG
1 TTT-AGGGTTAAAATGTAATTTTAGGAAAATTTAGGGCTAAAATATAATATTTAGAA-AG
17502045 TTTAGGG
1 TTTAGGG
17502052 GCTCTTTCAT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
56 4 0.04
57 46 0.44
58 26 0.25
59 27 0.26
60 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.37
Consensus pattern (58 bp):
TTTAGGGTTAAAATGTAATTTTAGGAAAATTTAGGGCTAAAATATAATATTTAGAAAG
Found at i:17502038 original size:29 final size:29
Alignment explanation
Indices: 17501879--17502052 Score: 167
Period size: 29 Copynumber: 6.0 Consensus size: 29
17501869 AATTTAAGGT
* * *
17501879 TAAAATGTAATTTT-GTAAAAATTTGAGGGC
1 TAAAATGTAATTTTAG-GAAAGTTT-AGGGG
* *
17501909 TAAAATATAATATTTA-GAAAGTTTAGGGT
1 TAAAATGTAAT-TTTAGGAAAGTTTAGGGG
*
17501938 TAAAATGTAATTTTAGGAAACTTTA-GGG
1 TAAAATGTAATTTTAGGAAAGTTTAGGGG
* *
17501966 TAAAATGTGATTTTAGGAAAGTTTGGGGG
1 TAAAATGTAATTTTAGGAAAGTTTAGGGG
* *
17501995 TTAAATGTGATTTTAGGAAAGTTTAGGGG
1 TAAAATGTAATTTTAGGAAAGTTTAGGGG
* * *
17502024 TCAAATATAATTTTA-AAAGAGTTTAGGGG
1 TAAAATGTAATTTTAGGAA-AGTTTAGGGG
17502053 CTCTTTCATG
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
28 30 0.24
29 74 0.60
30 16 0.13
31 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.24, T:0.36
Consensus pattern (29 bp):
TAAAATGTAATTTTAGGAAAGTTTAGGGG
Found at i:17504133 original size:160 final size:162
Alignment explanation
Indices: 17503861--17504166 Score: 388
Period size: 160 Copynumber: 1.9 Consensus size: 162
17503851 GCTTCTACCC
* * * *
17503861 ACTTCTCTGTATCTTATTAGGAAGATAGGGGTTTGAAGCTTCACTCGTATTGAACTTTGCTTCAT
1 ACTTCTCTGTATCTCATCAAGAAGATAGGGGTTTGAAGCTTCACTCGTATTGAACTTCGCTTCAT
* * *
17503926 TTGAATTAGTCTACTTTTCTGTATCTCATTAGGAAGATGACCACTTCATTGA-TTTAATCCACTT
66 TTGAATTAGTCTACTTTTCTATATCTCATCAAGAAGATGACCACTTCATT-ATTTTAATCCACTT
*
17503990 CTTTGTATCTCATCAGGAAGACGGATTTGGTCT
130 CTCTGTATCTCATCAGGAAGACGGATTTGGTCT
* * * *
17504023 ACTTCTCTGTATCTCATCAAGAAGAT-GGGGTTTGAAG-TCTCATTTGTATTGAGCTTCGTTTCA
1 ACTTCTCTGTATCTCATCAAGAAGATAGGGGTTTGAAGCT-TCACTCGTATTGAACTTCGCTTCA
** * ** *
17504086 -TTGTTTTGGTCTA-TTTCTCTATATCTCATCAAGAAGATGGTCACTTCATTATTTTAATTCACT
65 TTTGAATTAGTCTACTTT-TCTATATCTCATCAAGAAGATGACCACTTCATTATTTTAATCCACT
17504149 TCTCTGTATCTCATCAGG
129 TCTCTGTATCTCATCAGG
17504167 TAGATGGGAC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
159 4 0.03
160 66 0.54
161 30 0.24
162 23 0.19
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (162 bp):
ACTTCTCTGTATCTCATCAAGAAGATAGGGGTTTGAAGCTTCACTCGTATTGAACTTCGCTTCAT
TTGAATTAGTCTACTTTTCTATATCTCATCAAGAAGATGACCACTTCATTATTTTAATCCACTTC
TCTGTATCTCATCAGGAAGACGGATTTGGTCT
Found at i:17504245 original size:123 final size:123
Alignment explanation
Indices: 17504023--17504293 Score: 348
Period size: 123 Copynumber: 2.2 Consensus size: 123
17504013 GATTTGGTCT
* ** * **
17504023 ACTTCTCTGTATCTCATCAAGAAGATGGGGTTTGAAGTCTCATTTGTATTGAGCTTCGTTTCATT
1 ACTTCTCTGTATCTCATCAGGAAGATGGGACTTGAAGTCTCATTCGTATTGAGCTTCGCCTCATT
* * * * * *
17504088 GTTTTGGTCTATTTCTCTATATCTCATCAAGAAGATG-GT-CACTTCATTATTTTAATTC
66 GATTTGATCTACTTCTCTATATCTCATCAAGAAGATGACTGC-C-TCATTATTTCAATCC
* *
17504146 ACTTCTCTGTATCTCATCAGGTAGATGGGACTTGAAGTCTCATTCGTATTGAGCTTTGCCTCATT
1 ACTTCTCTGTATCTCATCAGGAAGATGGGACTTGAAGTCTCATTCGTATTGAGCTTCGCCTCATT
* * *
17504211 GATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATCC
66 GATTTGATCTACTTCTCTATATCTCATCAAGAAGATGACTGCCTCATTATTTCAATCC
*
17504269 ACTTCTCTTTATCTCATCAGGAAGA
1 ACTTCTCTGTATCTCATCAGGAAGA
17504294 CGAATTTGGT
Statistics
Matches: 127, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
123 124 0.98
124 2 0.02
125 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (123 bp):
ACTTCTCTGTATCTCATCAGGAAGATGGGACTTGAAGTCTCATTCGTATTGAGCTTCGCCTCATT
GATTTGATCTACTTCTCTATATCTCATCAAGAAGATGACTGCCTCATTATTTCAATCC
Found at i:17504255 original size:48 final size:48
Alignment explanation
Indices: 17504202--17504293 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
17504192 TATTGAGCTT
* *
17504202 TGCCTCATTGATTT-GATCTACTTCTCTGTATCTCATCAGGAAGATGAC
1 TGCCTCATTG-TTTCAATCCACTTCTCTGTATCTCATCAGGAAGATGAC
*
17504250 TGCCTCATTGTTTCAATCCACTTCTCTTTATCTCATCAGGAAGA
1 TGCCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGA
17504294 CGAATTTGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
47 3 0.08
48 37 0.93
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (48 bp):
TGCCTCATTGTTTCAATCCACTTCTCTGTATCTCATCAGGAAGATGAC
Found at i:17504356 original size:85 final size:85
Alignment explanation
Indices: 17504221--17504378 Score: 239
Period size: 85 Copynumber: 1.9 Consensus size: 85
17504211 GATTTGATCT
*
17504221 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATCCACTTCTCTTTATCTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAACCCACTTCTCTTTATCTCAT
17504286 CAGGAAGACGAATTTGGTTC
66 CAGGAAGACGAATTTGGTTC
* * * *
17504306 ACTTCTTTGTATCTCATCAGGAAGATGA-TCGCTTTATTGCTTT-GACCCACTTCTCTTTATCTC
1 ACTTCTCTGTATCTCATCAGGAAGATGACT-GCCTCATTG-TTTCAACCCACTTCTCTTTATCTC
17504369 ATCAGGAAGA
64 ATCAGGAAGA
17504379 TGGGGTTTGA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
84 1 0.02
85 62 0.94
86 3 0.05
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (85 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAACCCACTTCTCTTTATCTCAT
CAGGAAGACGAATTTGGTTC
Found at i:17504511 original size:207 final size:207
Alignment explanation
Indices: 17504145--17504663 Score: 707
Period size: 207 Copynumber: 2.5 Consensus size: 207
17504135 TATTTTAATT
* ** * *
17504145 CACTTCTCTGTATCTCATCAGGTAGATGGGACTTGAAGTCTCATTCGTATTGAGCTTTGCCTCAT
1 CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
* *
17504210 TGATTTGATCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTGTTTCAATCCACTTCT
66 TGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCACTTCT
* * * * * *
17504275 CTTTATCTCATCAGGAAGACGAATTTGGTTCACTTCTTTGTATCTCATCAGGAAGATGATCGCTT
131 CTGTATCTCATCAGAAAGACGAATTTGGTTCACTTCTCTGCATCTCATCAGGAAGATGACCAC-T
** *
17504340 TATTGCTTTGACC
195 TATTGCTTCAAAC
*
17504353 CACTTCTCTTTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
1 CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
* * **
17504418 TGACTTGGT-TACTTCTTTGTATCTCGCCAGGAAGATGACTGCCTCATTATTTCAATCCACTTCT
66 TGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCACTTCT
* * *
17504482 CTGTATCTCATCTGAAAGACGAATTTGGTTCACTTCTCTGCATCTCGTTAGGAAGATGACCACTT
131 CTGTATCTCATCAGAAAGACGAATTTGGTTCACTTCTCTGCATCTCATCAGGAAGATGACCACTT
*
17504547 ATTGGTTCAAAC
196 ATTGCTTCAAAC
* * * * ** * *
17504559 CACTTCCCTGTATCTCATCAGGAAGATGGGGTTTGAATTTTCACTCACATTGAGCTGCGCTTCAA
1 CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
* *
17504624 TGATTTGGTCTTCTTCTCTGTATCTCATCAAGAAGATGAC
66 TGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGAC
17504664 CATCTTATTA
Statistics
Matches: 270, Mismatches: 40, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
206 74 0.27
207 130 0.48
208 66 0.24
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (207 bp):
CACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTCTCATTCGTATTGAGCTTCGCTTCAT
TGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCATTATTTCAATCCACTTCT
CTGTATCTCATCAGAAAGACGAATTTGGTTCACTTCTCTGCATCTCATCAGGAAGATGACCACTT
ATTGCTTCAAAC
Found at i:17504976 original size:43 final size:44
Alignment explanation
Indices: 17504871--17505148 Score: 359
Period size: 46 Copynumber: 6.3 Consensus size: 44
17504861 AGGAAGATGA
* * * *
17504871 CTTCAATCTGCCTCTCTTAACTTAGGGGTAAAAGATTAGAAAGG
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGG
* * *
17504915 TTTTCAATCTACCCCTCTTGA-TTAGGGATAAAAGATTGGAATGG
1 -CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGG
* *
17504959 CTTCAATCTGTCCCTCTTGA-TTAGGGGTATAAGATTGGAAT--
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGG
* *
17505000 CTTCAATCTACCCCTCTTGA-TTAGGGGTAAGAGATTGGAATGG
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGG
*
17505043 CTTCAAACTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGATGG
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGA--ATGG
*
17505089 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAATATTGGAATGTGG
1 CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAA--TGG
17505135 CTTCAATCTGCCCC
1 CTTCAATCTGCCCC
17505149 ATGATCTGGG
Statistics
Matches: 205, Mismatches: 21, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
41 37 0.18
43 54 0.26
44 39 0.19
45 16 0.08
46 59 0.29
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
CTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGG
Found at i:17505015 original size:84 final size:84
Alignment explanation
Indices: 17504871--17505147 Score: 349
Period size: 84 Copynumber: 3.2 Consensus size: 84
17504861 AGGAAGATGA
* * *
17504871 CTTCAATCTGCCTCTCTTAACTTAGGGGTAAAAGATTAGAAAGGTTTTCAATCTACCCCTCTTGA
1 CTTCAATCTGCC-CTCTTGACTTAGGGGTAAAAGATT-GGAA--TCTTCAATCTACCCCTCTTGA
*
17504936 TTAGGGATAAAAGATTGGAATGG
62 TTAGGGGTAAAAGATTGGAATGG
*
17504959 CTTCAATCTGTCCCTCTTGA-TTAGGGGTATAAGATTGGAATCTTCAATCTACCCCTCTTGATTA
1 CTTCAATCTG-CCCTCTTGACTTAGGGGTAAAAGATTGGAATCTTCAATCTACCCCTCTTGATTA
*
17505023 GGGGTAAGAGATTGGAATGG
65 GGGGTAAAAGATTGGAATGG
* *
17505043 CTTCAAACTGCCCCTCTTGACTTAGGGGTAAAAGATTGGATGATGGCTTCAATCTGCCCCTCTTG
1 CTTCAATCTG-CCCTCTTGACTTAGGGGTAAAAGATTGGA--AT--CTTCAATCTACCCCTCTTG
*
17505108 ACTTAGGGGTAAAATATTGGAATGTGG
61 A-TTAGGGGTAAAAGATTGGAA--TGG
17505135 CTTCAATCTGCCC
1 CTTCAATCTGCCC
17505148 CATGATCTGG
Statistics
Matches: 167, Mismatches: 13, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
84 59 0.35
85 18 0.11
86 3 0.02
87 17 0.10
88 16 0.10
89 21 0.13
90 18 0.11
91 3 0.02
92 12 0.07
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (84 bp):
CTTCAATCTGCCCTCTTGACTTAGGGGTAAAAGATTGGAATCTTCAATCTACCCCTCTTGATTAG
GGGTAAAAGATTGGAATGG
Found at i:17505589 original size:49 final size:49
Alignment explanation
Indices: 17505488--17505807 Score: 302
Period size: 49 Copynumber: 6.5 Consensus size: 49
17505478 TTGCGGTCTT
* * * * *
17505488 AACCTTTCCTATCATATCTTCTAAGGTACCGGGTTTACCGTTGCGGCCTC
1 AACCTTTCCTTTCATATCTT-TATGGTATCGGGTTCACCGTTGCAGCCTC
* * *
17505538 AACCTTTCCTTTCATATCTTTATGGTATCGGGTTCACTGTTACGGCCTC
1 AACCTTTCCTTTCATATCTTTATGGTATCGGGTTCACCGTTGCAGCCTC
** * * * *
17505587 AACCTTTCCCATCACATCTTCTGA-GTTATCGGGTTTACCGTTGCAACCTC
1 AACCTTTCCTTTCATATCTT-T-ATGGTATCGGGTTCACCGTTGCAGCCTC
* * *
17505637 AACCTTTCCTTTCATATCTTCATGGTATTGGGGTCACCGTTGCAGCCTC
1 AACCTTTCCTTTCATATCTTTATGGTATCGGGTTCACCGTTGCAGCCTC
* * * * * *
17505686 AACTTTTCCCTTCATGTCTTCAT-GTAATCGGGTTCATCGTTGTAGCCTC
1 AACCTTTCCTTTCATATCTTTATGGT-ATCGGGTTCACCGTTGCAGCCTC
* * * * * *
17505735 AACCTTTCCTTTCATGTCTTCATGGTACCGGTTTCGCCGTTGCGGCCTC
1 AACCTTTCCTTTCATATCTTTATGGTATCGGGTTCACCGTTGCAGCCTC
** *
17505784 AACCTTTCCCATCATATCTCTATG
1 AACCTTTCCTTTCATATCTTTATG
17505808 TTTCCTTCGT
Statistics
Matches: 221, Mismatches: 44, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
48 3 0.01
49 158 0.71
50 59 0.27
51 1 0.00
ACGTcount: A:0.17, C:0.30, G:0.16, T:0.37
Consensus pattern (49 bp):
AACCTTTCCTTTCATATCTTTATGGTATCGGGTTCACCGTTGCAGCCTC
Found at i:17505608 original size:99 final size:98
Alignment explanation
Indices: 17505469--17505802 Score: 391
Period size: 99 Copynumber: 3.4 Consensus size: 98
17505459 TAAAGTACTA
* * * * * * *
17505469 GGTTCGCCATTGCGGTCTTAACCTTTCCTATCATATCTTCTAAGGTACCGGGTTTACCGTTGCGG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCT-AGGTATCGGGTTTACCGTTGCAG
*
17505534 CCTCAACCTTTCCTTTCATATCTTTATGGTATCG
65 CCTCAACCTTTCCTTTCATATCTTCATGGTATCG
* * * * *
17505568 GGTTCACTGTTACGGCCTCAACCTTTCCCATCACATCTTCTGAGTTATCGGGTTTACCGTTGCAA
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCT-AGGTATCGGGTTTACCGTTGCAG
*
17505633 CCTCAACCTTTCCTTTCATATCTTCATGGTATTG
65 CCTCAACCTTTCCTTTCATATCTTCATGGTATCG
* * * * * * * * *
17505667 GGGTCACCGTTGCAGCCTCAACTTTTCCCTTCATGTCTTC-ATGTAATCGGGTTCATCGTTGTAG
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTAGGT-ATCGGGTTTACCGTTGCAG
* *
17505731 CCTCAACCTTTCCTTTCATGTCTTCATGGTACCG
65 CCTCAACCTTTCCTTTCATATCTTCATGGTATCG
* *
17505765 GTTTCGCCGTTGCGGCCTCAACCTTTCCCATCATATCT
1 GGTTCACCGTTGCGGCCTCAACCTTTCCCATCATATCT
17505803 CTATGTTTCC
Statistics
Matches: 195, Mismatches: 39, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
97 2 0.01
98 77 0.39
99 116 0.59
ACGTcount: A:0.16, C:0.30, G:0.17, T:0.37
Consensus pattern (98 bp):
GGTTCACCGTTGCGGCCTCAACCTTTCCCATCATATCTTCTAGGTATCGGGTTTACCGTTGCAGC
CTCAACCTTTCCTTTCATATCTTCATGGTATCG
Found at i:17512225 original size:28 final size:28
Alignment explanation
Indices: 17512185--17512346 Score: 134
Period size: 28 Copynumber: 5.7 Consensus size: 28
17512175 AAACGGGGTC
*
17512185 AAAATG-AAGTTTTAGGGAATTTAAGGTT
1 AAAATGTAA-TTTTAGGAAATTTAAGGTT
**
17512213 AAAATGTAATTTTATAAAAATTTAAGGGTT
1 AAAATGTAATTTTA-GGAAATTTAA-GGTT
**
17512243 AAAATGTAATATTT-GGAAATTTGGGGTT
1 AAAATGTAAT-TTTAGGAAATTTAAGGTT
* *
17512271 AAAATGTGATTTTAGGAAAGTTTAAGGGTA
1 AAAATGTAATTTTAGGAAA-TTTAA-GGTT
* * *
17512301 AAAATGT-ATTTTGGGAAGTTTAGGGGTT
1 AAAATGTAATTTTAGGAAATTTA-AGGTT
*
17512329 AAAATGTGATTTT-GGAAA
1 AAAATGTAATTTTAGGAAA
17512347 AGTTTGAGGG
Statistics
Matches: 109, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
27 3 0.03
28 47 0.43
29 32 0.29
30 24 0.22
31 3 0.03
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (28 bp):
AAAATGTAATTTTAGGAAATTTAAGGTT
Found at i:17512271 original size:58 final size:58
Alignment explanation
Indices: 17512209--17512371 Score: 204
Period size: 58 Copynumber: 2.8 Consensus size: 58
17512199 GGGAATTTAA
* * *
17512209 GGTTAAAATGTAATTTTATAAAAATTTAAGGGTTAAAATGTAATATTT-GGAAATTT-GG
1 GGTTAAAATGTGATTTTAGAAAAGTTTAAGGGTTAAAATGT-AT-TTTGGGAAATTTAGG
* * *
17512267 GGTTAAAATGTGATTTTAGGAAAGTTTAAGGGTAAAAATGTATTTTGGGAAGTTTAGG
1 GGTTAAAATGTGATTTTAGAAAAGTTTAAGGGTTAAAATGTATTTTGGGAAATTTAGG
* * *
17512325 GGTTAAAATGTGATTTTGGAAAAGTTTGAGGGTTATAATGTGATTTT
1 GGTTAAAATGTGATTTTAGAAAAGTTTAAGGGTTAAAATGT-ATTTT
17512372 AAAAAAGTTA
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
56 3 0.03
57 9 0.10
58 74 0.81
59 5 0.05
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (58 bp):
GGTTAAAATGTGATTTTAGAAAAGTTTAAGGGTTAAAATGTATTTTGGGAAATTTAGG
Found at i:17512378 original size:30 final size:30
Alignment explanation
Indices: 17512204--17512380 Score: 168
Period size: 30 Copynumber: 6.1 Consensus size: 30
17512194 TTTTAGGGAA
* * *
17512204 TTTAA-GGTTAAAATGTAATTTTATAAAAA
1 TTTAAGGGTTAAAATGTGATTTTAGAAAAG
* *
17512233 TTTAAGGGTTAAAATGTAATATTT-GGAAA-
1 TTTAAGGGTTAAAATGTGAT-TTTAGAAAAG
* *
17512262 TTT-GGGGTTAAAATGTGATTTTAGGAAAG
1 TTTAAGGGTTAAAATGTGATTTTAGAAAAG
* **
17512291 TTTAAGGGTAAAAATGT-ATTTT-GGGAAG
1 TTTAAGGGTTAAAATGTGATTTTAGAAAAG
* *
17512319 TTTAGGGGTTAAAATGTGATTTTGGAAAAG
1 TTTAAGGGTTAAAATGTGATTTTAGAAAAG
* * *
17512349 TTTGAGGGTTATAATGTGATTTTAAAAAAG
1 TTTAAGGGTTAAAATGTGATTTTAGAAAAG
17512379 TT
1 TT
17512381 AGGGGGCTCT
Statistics
Matches: 125, Mismatches: 16, Indels: 13
0.81 0.10 0.08
Matches are distributed among these distances:
27 3 0.02
28 39 0.31
29 21 0.17
30 59 0.47
31 3 0.02
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (30 bp):
TTTAAGGGTTAAAATGTGATTTTAGAAAAG
Found at i:17513257 original size:4 final size:4
Alignment explanation
Indices: 17513250--17513399 Score: 300
Period size: 4 Copynumber: 37.5 Consensus size: 4
17513240 AATGCAATAA
17513250 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17513298 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17513346 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
17513394 ATGT AT
1 ATGT AT
17513400 ATAAATAAAC
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 146 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:17515828 original size:13 final size:13
Alignment explanation
Indices: 17515810--17515836 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17515800 TTCCTAGGAA
17515810 GAATAATCAAGTT
1 GAATAATCAAGTT
17515823 GAATAATCAAGTT
1 GAATAATCAAGTT
17515836 G
1 G
17515837 CTGATGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (13 bp):
GAATAATCAAGTT
Found at i:17517325 original size:27 final size:28
Alignment explanation
Indices: 17517285--17517352 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
17517275 ATTTTTATTT
* *
17517285 TATTTTAATATTATATT-ATACTTTAAA
1 TATTTTTATTTTATATTAATACTTTAAA
* *
17517312 TATTTTTATTTTATTTTAACATCCTTTAAA
1 TATTTTTATTTTATATT-A-ATACTTTAAA
17517342 T-TTTTTATTTT
1 TATTTTTATTTT
17517353 TTTAAATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 14 0.41
29 10 0.29
30 10 0.29
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (28 bp):
TATTTTTATTTTATATTAATACTTTAAA
Found at i:17517755 original size:16 final size:16
Alignment explanation
Indices: 17517734--17517765 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
17517724 ACACGTGCTC
*
17517734 TCTAGATGTGGGTTCG
1 TCTAGATGTGGATTCG
17517750 TCTAGATGTGGATTCG
1 TCTAGATGTGGATTCG
17517766 CATATATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.34, T:0.38
Consensus pattern (16 bp):
TCTAGATGTGGATTCG
Found at i:17526178 original size:16 final size:15
Alignment explanation
Indices: 17526142--17526194 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
17526132 AAATAAAAAT
* *
17526142 AAATTATTACATTCA
1 AAATTATAAAATTCA
17526157 AAATTA-AAATATTCA
1 AAATTATAAA-ATTCA
17526172 TAAATTATAAAATTCA
1 -AAATTATAAAATTCA
17526188 AAATTAT
1 AAATTAT
17526195 TTGAATTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 1 0.03
15 18 0.55
16 11 0.33
17 3 0.09
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATTATAAAATTCA
Found at i:17526682 original size:25 final size:25
Alignment explanation
Indices: 17526654--17526703 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
17526644 AACTATTTTG
*
17526654 GTGACTTTATATTAAGAAAATGATT
1 GTGACTTTAGATTAAGAAAATGATT
17526679 GTGACTTTAGATTAAGAAAATGATT
1 GTGACTTTAGATTAAGAAAATGATT
17526704 ATTTATGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (25 bp):
GTGACTTTAGATTAAGAAAATGATT
Found at i:17527230 original size:12 final size:12
Alignment explanation
Indices: 17527215--17527261 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
17527205 GCTTTTTTTG
*
17527215 TTTTTTTTGTTA
1 TTTTTGTTGTTA
*
17527227 TTTTTGTTGCTA
1 TTTTTGTTGTTA
*
17527239 TTTTGGTTGTTA
1 TTTTTGTTGTTA
*
17527251 CTTTTGTTGTT
1 TTTTTGTTGTT
17527262 TGAGTGTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.06, C:0.04, G:0.17, T:0.72
Consensus pattern (12 bp):
TTTTTGTTGTTA
Found at i:17527240 original size:45 final size:44
Alignment explanation
Indices: 17527172--17527262 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
17527162 GTTTCTAGTG
* * * *
17527172 TTTTTTTGTTGTTTTGGTTCTATTTTTGCTGTTGCTTTTTTTGT
1 TTTTTTTGTTATTTTGGTTCTATTTTGGCTGTTACTTTTGTTGT
* *
17527216 TTTTTTTGTTATTTTTGTTGCTATTTTGGTTGTTACTTTTGTTGT
1 TTTTTTTGTTATTTTGGTT-CTATTTTGGCTGTTACTTTTGTTGT
17527261 TT
1 TT
17527263 GAGTGTTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 17 0.43
45 23 0.57
ACGTcount: A:0.04, C:0.05, G:0.18, T:0.73
Consensus pattern (44 bp):
TTTTTTTGTTATTTTGGTTCTATTTTGGCTGTTACTTTTGTTGT
Found at i:17528796 original size:12 final size:12
Alignment explanation
Indices: 17528779--17528803 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17528769 ATTTAGCAAA
17528779 AATCTTGCTATT
1 AATCTTGCTATT
17528791 AATCTTGCTATT
1 AATCTTGCTATT
17528803 A
1 A
17528804 GATCCTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.08, T:0.48
Consensus pattern (12 bp):
AATCTTGCTATT
Found at i:17546610 original size:29 final size:28
Alignment explanation
Indices: 17546544--17546612 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
17546534 TTAAATTGTC
*
17546544 TATATTTTTATAATTTTAAAGGATTAAA
1 TATAATTTTATAATTTTAAAGGATTAAA
* * *
17546572 TCA-AATTTTTATTATTTTAAGGGGTTAAAA
1 T-ATAA-TTTTATAATTTTAAAGGATT-AAA
17546602 TATAATTTTAT
1 TATAATTTTAT
17546613 CTTTATTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
28 2 0.06
29 25 0.76
30 6 0.18
ACGTcount: A:0.39, C:0.01, G:0.09, T:0.51
Consensus pattern (28 bp):
TATAATTTTATAATTTTAAAGGATTAAA
Found at i:17547174 original size:22 final size:22
Alignment explanation
Indices: 17547139--17547180 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
17547129 CATAACTCGA
*
17547139 TTTAAAACTATTTCACTTGATT
1 TTTAAAACTATTTCAATTGATT
* *
17547161 TTTAAAATTGTTTCAATTGA
1 TTTAAAACTATTTCAATTGA
17547181 CTTAAATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTAAAACTATTTCAATTGATT
Found at i:17552263 original size:17 final size:18
Alignment explanation
Indices: 17552241--17552274 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
17552231 ATAACAATTA
17552241 TGAAGATTTTGG-ATATG
1 TGAAGATTTTGGCATATG
17552258 TGAAGATTTTGGCATAT
1 TGAAGATTTTGGCATAT
17552275 TCCCCGAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.03, G:0.26, T:0.41
Consensus pattern (18 bp):
TGAAGATTTTGGCATATG
Found at i:17555957 original size:30 final size:32
Alignment explanation
Indices: 17555911--17555969 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 32
17555901 AAACCTACGA
*
17555911 ACTTAAATAAAAAAC-TTTGAATTGTTCAGTG
1 ACTTAAATAAAAAACTTTTGAATAGTTCAGTG
*
17555942 ACTTAAAT-GAAAACTTTTGAATAGTTCA
1 ACTTAAATAAAAAACTTTTGAATAGTTCA
17555970 ACAACCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.36
Consensus pattern (32 bp):
ACTTAAATAAAAAACTTTTGAATAGTTCAGTG
Found at i:17556063 original size:46 final size:46
Alignment explanation
Indices: 17556011--17556104 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
17556001 GATCAAAATG
17556011 TAAACTTATTAATAATTTAGTGACCTTAATTGTAGTTTACCTATTT
1 TAAACTTATTAATAATTTAGTGACCTTAATTGTAGTTTACCTATTT
17556057 TAAACTTATTAATAATTTAGTGACCTTAATTGTAGTTTACCTATTT
1 TAAACTTATTAATAATTTAGTGACCTTAATTGTAGTTTACCTATTT
17556103 TA
1 TA
17556105 TTTTAATGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.48
Consensus pattern (46 bp):
TAAACTTATTAATAATTTAGTGACCTTAATTGTAGTTTACCTATTT
Found at i:17556700 original size:20 final size:21
Alignment explanation
Indices: 17556677--17556736 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 21
17556667 AACATTGATT
17556677 TTTAAAATTTTAT-TTATTTA
1 TTTAAAATTTTATATTATTTA
* *
17556697 TTT--AATTTTAATCTTATTAA
1 TTTAAAATTTT-ATATTATTTA
* *
17556717 TATAATATTTTATATTATTT
1 TTTAAAATTTTATATTATTT
17556737 TGATTAGTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
18 6 0.19
19 2 0.06
20 11 0.35
21 7 0.23
22 5 0.16
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTAAAATTTTATATTATTTA
Found at i:17557507 original size:22 final size:20
Alignment explanation
Indices: 17557468--17557508 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
17557458 TTATATTAAG
*
17557468 TAAAATATTAAAATAATTAT
1 TAAAATATTAAAAAAATTAT
17557488 TAAACATATTTAAAAAAATTA
1 TAAA-ATA-TTAAAAAAATTA
17557509 AATATTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAATATTAAAAAAATTAT
Found at i:17557880 original size:15 final size:14
Alignment explanation
Indices: 17557860--17557910 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
17557850 ATTCAAAAGA
17557860 AATACTATTTTTTAT
1 AATACTA-TTTTTAT
17557875 AATACTATTTTTAT
1 AATACTATTTTTAT
* *
17557889 AATA--ATTGTTAA
1 AATACTATTTTTAT
17557901 AATACTATTT
1 AATACTATTT
17557911 AATATTTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 10 0.32
14 14 0.45
15 7 0.23
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (14 bp):
AATACTATTTTTAT
Found at i:17562311 original size:30 final size:29
Alignment explanation
Indices: 17562246--17562353 Score: 107
Period size: 29 Copynumber: 3.8 Consensus size: 29
17562236 CAGTTCTCTC
** *
17562246 TTTTAAATTTTACCCATTTATTTTGT-TTT
1 TTTTAAATTAAACCCTTTTATTTT-TATTT
*
17562275 TTTTAAATTAAATCCTTTTATTTTTATTT
1 TTTTAAATTAAACCCTTTTATTTTTATTT
*
17562304 TTGTTAAAATTTAACCCTTTTA-TTTTATTT
1 TT-TT-AAATTAAACCCTTTTATTTTTATTT
*
17562334 TTTAAAATT--ACCCTTTTATT
1 TTTTAAATTAAACCCTTTTATT
17562354 CTGTTTCTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
26 9 0.13
27 1 0.01
28 6 0.09
29 26 0.38
30 12 0.18
31 14 0.21
ACGTcount: A:0.26, C:0.10, G:0.02, T:0.62
Consensus pattern (29 bp):
TTTTAAATTAAACCCTTTTATTTTTATTT
Found at i:17566792 original size:11 final size:11
Alignment explanation
Indices: 17566776--17566811 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
17566766 ATTTCACCTA
17566776 AAAAGAAGAAG
1 AAAAGAAGAAG
*
17566787 AAAAGAAAAAG
1 AAAAGAAGAAG
*
17566798 AAAAAAAGAAG
1 AAAAGAAGAAG
17566809 AAA
1 AAA
17566812 GGAAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAAG
Found at i:17566804 original size:14 final size:14
Alignment explanation
Indices: 17566781--17566832 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
17566771 ACCTAAAAAG
*
17566781 AAGAAGAAAAGAAA
1 AAGAAAAAAAGAAA
17566795 AAGAAAAAAAGAAGA
1 AAGAAAAAAAGAA-A
* *
17566810 AAGGAAAAATGAAA
1 AAGAAAAAAAGAAA
17566824 AATGAAAAA
1 AA-GAAAAA
17566833 TGAGAGGTCG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 15 0.47
15 17 0.53
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:17566806 original size:22 final size:24
Alignment explanation
Indices: 17566775--17566825 Score: 79
Period size: 22 Copynumber: 2.2 Consensus size: 24
17566765 TATTTCACCT
17566775 AAAAAGAAGAAGAAAAGAAAAA-G
1 AAAAAGAAGAAGAAAAGAAAAATG
*
17566798 AAAAA-AAGAAGAAAGGAAAAATG
1 AAAAAGAAGAAGAAAAGAAAAATG
17566821 AAAAA
1 AAAAA
17566826 TGAAAAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (24 bp):
AAAAAGAAGAAGAAAAGAAAAATG
Found at i:17567959 original size:50 final size:50
Alignment explanation
Indices: 17567905--17568060 Score: 188
Period size: 50 Copynumber: 3.1 Consensus size: 50
17567895 CTACAAAACC
* *
17567905 AAAATCCTATATCCTTAAACTTACAAGGATCAGATTAAAACTAACATT-G
1 AAAATCCTATATCCCTAAACTTACAGGGATCAGATTAAAACTAACATTAG
* * ** * *
17567954 AAAAATCTTATATCCCTAAAGTTGTAGGGATCGGATTAAAACTAATATTAG
1 -AAAATCCTATATCCCTAAACTTACAGGGATCAGATTAAAACTAACATTAG
* * *
17568005 CAAATCCTATATCCCTAAACCTACAGGGATCAAATTAAAACTAACATTAG
1 AAAATCCTATATCCCTAAACTTACAGGGATCAGATTAAAACTAACATTAG
*
17568055 CAAATC
1 AAAATC
17568061 TTTATCTCTT
Statistics
Matches: 88, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 87 0.99
51 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.28
Consensus pattern (50 bp):
AAAATCCTATATCCCTAAACTTACAGGGATCAGATTAAAACTAACATTAG
Found at i:17568312 original size:45 final size:44
Alignment explanation
Indices: 17568210--17568848 Score: 468
Period size: 45 Copynumber: 15.0 Consensus size: 44
17568200 ACACCATCCT
* * * *
17568210 ATCCAATCTTTTACGCC-AACCATG-GGGCAAATTGAAG---CC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* *
17568249 ATCCAATATTTTACCCCTAAGTCAAGAAAGGCAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCTAA-TCAAG-AGGGCAGATTGAAGCCACC
* * *
17568295 ATTCAATC-TTTACCCCTAAACCAAGAGGGGAGATTGAAGCCACC
1 ATCCAATCTTTTACCCCT-AATCAAGAGGGCAGATTGAAGCCACC
** * * *
17568339 ATTTAATCTTTTA-CCCTAA-CTAGAGGGTAAATTGAAG--ACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* * *
17568379 ATCCAATCTTTTA-CCCTAA-CTAGAGGGCAAATTAAAG--ACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* *
17568419 ATCCAA--TTTTACCCCTAAACCAAGAGGGACAGATTGAAGACACC
1 ATCCAATCTTTTACCCCT-AATCAAGAGGG-CAGATTGAAGCCACC
* *
17568463 ATCCAATCTTTTA-CCCTAA-CTAGAGGGTAGATTGAAG--ACC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* * * * *
17568503 ATCTAATCTTTTA-CCCTAA-CCA-TGGGCATATTGAAG---CT
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* *
17568541 ATCCAATCTTTTA-CCCT-AT---G-GGACAGATTGAAG---TC
1 ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
* * * * *
17568576 ATCCAATCTTTTACCCCTAAGTCAAGAGGGGTAAATTGAAACTACT
1 ATCCAATCTTTTACCCCTAA-TCAAGA-GGGCAGATTGAAGCCACC
* * *
17568622 ATCCAATCTTTTACCCTTAGTCAAGAGGGGCAGATTGAAGCTACC
1 ATCCAATCTTTTACCCCTAATCAAGA-GGGCAGATTGAAGCCACC
* * *
17568667 ATCCAATCTTTTATCCCTAGTCAAGAAGGGCAGATTTAAGCCACC
1 ATCCAATCTTTTACCCCTAATCAAG-AGGGCAGATTGAAGCCACC
* * * * * *
17568712 ATACAATCTTTTACCTCTAATTAAGAGAGACAGATTAAAGCCATC
1 ATCCAATCTTTTACCCCTAATCAAGAG-GGCAGATTGAAGCCACC
* *
17568757 ATCCAATCTTTTACCCCTAATCAATAGGGGCAGATTGAAGCCATC
1 ATCCAATCTTTTACCCCTAATCAAGA-GGGCAGATTGAAGCCACC
* *
17568802 ATCCAATC-TTTACCCCTAAATCAAGAGGGGAAGATTGAAGCTACC
1 ATCCAATCTTTTACCCCT-AATCAAGA-GGGCAGATTGAAGCCACC
17568847 AT
1 AT
17568849 ATCACAAAAG
Statistics
Matches: 497, Mismatches: 69, Indels: 62
0.79 0.11 0.10
Matches are distributed among these distances:
35 24 0.05
36 4 0.01
37 2 0.00
38 23 0.05
39 30 0.06
40 72 0.14
41 11 0.02
42 32 0.06
43 29 0.06
44 50 0.10
45 185 0.37
46 35 0.07
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (44 bp):
ATCCAATCTTTTACCCCTAATCAAGAGGGCAGATTGAAGCCACC
Found at i:17568471 original size:124 final size:126
Alignment explanation
Indices: 17568210--17568841 Score: 412
Period size: 124 Copynumber: 5.0 Consensus size: 126
17568200 ACACCATCCT
* * *
17568210 ATCCAATCTTTTACGCC-AACCATG-GGGCAAATTGAAG-CCATCCAATATTTTACCCCTAAGTC
1 ATCCAATCTTTTAC-CCTAACTA-GAGGGTAAATTGAAGACCATCCAATCTTTTA-CCCTAA--C
* * * * *
17568272 AAGAAAGGCAGATTGAAGCCACCATTCAATCTTTACCCCTAAACCAAGAGGGGAGATTGAAGCCA
61 AAGAAAGGCAAATTAAAG-CACCATCCAATCTTTACCCCTAAACCAAGAGGGCAGATTGAAGACA
17568337 CC
125 CC
** *
17568339 ATTTAATCTTTTACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTTTTACCCTAACTAG-A
1 ATCCAATCTTTTACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTTTTACCCTAACAAGAA
*
17568403 GGGCAAATTAAAG-ACCATCCAAT-TTTACCCCTAAACCAAGAGGGACAGATTGAAGACACC
66 AGGCAAATTAAAGCACCATCCAATCTTTACCCCTAAACCAAGAGGG-CAGATTGAAGACACC
* * *
17568463 ATCCAATCTTTTACCCTAACTAGAGGGTAGATTGAAGACCATCTAATCTTTTACCCTAACCATG-
1 ATCCAATCTTTTACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTTTTACCCTAA-CAAGA
* * * * * *
17568527 --GGCATATTGAAG--CTATCCAATCTTTTA-CCCT-----ATG-GGACAGATTGAAG---TC
65 AAGGCAAATTAAAGCACCATCCAATC-TTTACCCCTAAACCAAGAGGGCAGATTGAAGACACC
*
17568576 ATCCAATCTTTTACCCCTAAGTCAAGAGGGGTAAATTGAA-ACTACTATCCAATCTTTTACCCTT
1 ATCCAATCTTTTA-CCCTAA--CTAGA-GGGTAAATTGAAGAC--C-ATCCAATCTTTTACCC-T
* ** * * * ** *
17568640 AGTCAAGAGGGGCAGATTGAAGCTACCATCCAATCTTTTATCCCT-AGTCAAGAAGGGCAGATTT
58 A-ACAAGAAAGGCAAATTAAAGC-ACCATCCAATC-TTTACCCCTAAACCAAG-AGGGCAGATTG
*
17568704 AAGCCACC
119 AAGACACC
* * * * *
17568712 ATACAATCTTTTACCTCTAATTAAGAGAG-ACAGATTAAAGCCATCATCCAATCTTTTACCCCTA
1 ATCCAATCTTTTACC-CTAACT-AGAGGGTA-A-ATTGAAG--ACCATCCAATCTTTTA-CCCTA
* ** * * * * *
17568776 ATCAATAGGGGCAGATTGAAGCCATCATCCAATCTTTACCCCTAAATCAAGAGGGGAAGATTGAA
59 A-CAAGAAAGGCAAATTAAAG-CACCATCCAATCTTTACCCCTAAACCAAGA-GGGCAGATTGAA
17568841 G
121 G
17568842 CTACCATATC
Statistics
Matches: 411, Mismatches: 48, Indels: 82
0.76 0.09 0.15
Matches are distributed among these distances:
113 14 0.03
114 6 0.01
116 16 0.04
117 13 0.03
118 3 0.01
119 15 0.04
120 5 0.01
122 8 0.02
123 46 0.11
124 81 0.20
125 2 0.00
126 25 0.06
127 7 0.02
128 3 0.01
129 34 0.08
130 14 0.03
131 2 0.00
133 12 0.03
134 12 0.03
135 70 0.17
136 22 0.05
138 1 0.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (126 bp):
ATCCAATCTTTTACCCTAACTAGAGGGTAAATTGAAGACCATCCAATCTTTTACCCTAACAAGAA
AGGCAAATTAAAGCACCATCCAATCTTTACCCCTAAACCAAGAGGGCAGATTGAAGACACC
Found at i:17568580 original size:35 final size:37
Alignment explanation
Indices: 17568369--17568591 Score: 152
Period size: 40 Copynumber: 5.7 Consensus size: 37
17568359 TAGAGGGTAA
* *
17568369 ATTGAAGACCATCCAATCTTTTACCCTAACTAGAGGGCAA
1 ATTGAAGACCATCCAATCTTTTACCCTAA-T-G-GGACAG
* *
17568409 ATTAAAGACCATCCAA--TTTTACCCCTAAACCAAGAGGGACAG
1 ATTGAAGACCATCCAATCTTTTA-CCCT-----AA-TGGGACAG
**
17568451 ATTGAAGACACCATCCAATCTTTTACCCTAACTAGAGGGTAG
1 ATTGAAG--ACCATCCAATCTTTTACCCTAA-T-G-GGACAG
* *
17568493 ATTGAAGACCATCTAATCTTTTACCCTAACCATGGG-CAT
1 ATTGAAGACCATCCAATCTTTTACCCT-A--ATGGGACAG
*
17568532 ATTGAAG-CTATCCAATCTTTTACCCT-ATGGGACAG
1 ATTGAAGACCATCCAATCTTTTACCCTAATGGGACAG
*
17568567 ATTGAAG-TCATCCAATCTTTTACCC
1 ATTGAAGACCATCCAATCTTTTACCC
17568592 CTAAGTCAAG
Statistics
Matches: 149, Mismatches: 18, Indels: 37
0.73 0.09 0.18
Matches are distributed among these distances:
34 5 0.03
35 25 0.17
38 22 0.15
39 12 0.08
40 38 0.26
41 3 0.02
42 22 0.15
43 2 0.01
44 11 0.07
45 4 0.03
46 5 0.03
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (37 bp):
ATTGAAGACCATCCAATCTTTTACCCTAATGGGACAG
Found at i:17570741 original size:31 final size:30
Alignment explanation
Indices: 17570698--17570767 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 30
17570688 CCATTTATTC
*
17570698 TTTTTTTAAAATTAAATCTTTTTATTTTAA
1 TTTTTTTAAAATTAAACCTTTTTATTTTAA
* *
17570728 TTTTTGTTAAAATTTAACCTTTTTATTTTTA
1 TTTTT-TTAAAATTAAACCTTTTTATTTTAA
17570759 TTTCTTTTA
1 TTT-TTTTA
17570768 TCCTTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
30 5 0.14
31 28 0.80
32 2 0.06
ACGTcount: A:0.27, C:0.06, G:0.01, T:0.66
Consensus pattern (30 bp):
TTTTTTTAAAATTAAACCTTTTTATTTTAA
Found at i:17571080 original size:24 final size:24
Alignment explanation
Indices: 17571018--17571068 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
17571008 AGAAATAATC
*
17571018 TTTTAGTTAAACTCTGTTTATTTG
1 TTTTAATTAAACTCTGTTTATTTG
17571042 TTTTAATTAAACTCTGTTTATTTG
1 TTTTAATTAAACTCTGTTTATTTG
17571066 TTT
1 TTT
17571069 GATTCAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.61
Consensus pattern (24 bp):
TTTTAATTAAACTCTGTTTATTTG
Found at i:17573472 original size:27 final size:28
Alignment explanation
Indices: 17573435--17573488 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
17573425 AAATGAGCAT
*
17573435 CATGACCTTT-GGTCAACAGGGAGTAAG
1 CATGACCTTTGGGTCAACAAGGAGTAAG
* *
17573462 CATGACTTTTGGGTCAATAAGGAGTAA
1 CATGACCTTTGGGTCAACAAGGAGTAA
17573489 ATCAGATATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (28 bp):
CATGACCTTTGGGTCAACAAGGAGTAAG
Found at i:17574890 original size:29 final size:27
Alignment explanation
Indices: 17574858--17575134 Score: 152
Period size: 29 Copynumber: 9.5 Consensus size: 27
17574848 GCCCGGAGGC
17574858 AAAATGGTAATTTTTGGTAAATTGAGGTT
1 AAAATGG-AA-TTTTGGTAAATTGAGGTT
* *
17574887 AAAAATTGAATTTTTG-AAAGTTCGAGG-T
1 -AAAATGGAATTTTGGTAAA-TT-GAGGTT
17574915 AAAATGGTAATTTTGGTGAAATT-AGGGTT
1 AAAATGG-AATTTTGGT-AAATTGA-GGTT
* * * *
17574944 AAAAATGGGATTTTGGAAAATTTAAGGGT
1 -AAAATGGAATTTTGGTAAA-TTGAGGTT
* *
17574973 AAAATGGTAATTTTGGTAAAATCAGGGTT
1 AAAATGG-AATTTTGGTAAATTGA-GGTT
* *
17575002 AAAATAGG-ATTTTGG-AAAGTTCAAGGGT
1 AAAAT-GGAATTTTGGTAAA-TT-GAGGTT
17575030 AAAATGGTAATTTTTGGTAAAATTGAGGTT
1 AAAATGG-AA-TTTTGGT-AAATTGAGGTT
* *
17575060 AAAAATGGAATTTTGG-AAAGTTCAGGGGTA
1 -AAAATGGAATTTTGGTAAA-TT--GAGGTT
* *
17575090 AAAATGGTGATTTTTGGTGAAATCGAGGTT
1 AAAAT-G-GAATTTTGGT-AAATTGAGGTT
17575120 AAAAATGGAATTTTG
1 -AAAATGGAATTTTG
17575135 TTTTAGGGTG
Statistics
Matches: 194, Mismatches: 24, Indels: 59
0.70 0.09 0.21
Matches are distributed among these distances:
27 18 0.09
28 47 0.24
29 59 0.30
30 41 0.21
31 22 0.11
32 4 0.02
33 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.35
Consensus pattern (27 bp):
AAAATGGAATTTTGGTAAATTGAGGTT
Found at i:17574989 original size:58 final size:58
Alignment explanation
Indices: 17574858--17575134 Score: 341
Period size: 57 Copynumber: 4.8 Consensus size: 58
17574848 GCCCGGAGGC
* * *
17574858 AAAATGGTAATTTTTGGT-AAATTGAGGTTAAAAATTGAATTTTTGAAAGTTCGA-GGT
1 AAAATGGTAA-TTTTGGTAAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTCAAGGGT
* * * *
17574915 AAAATGGTAATTTTGGTGAAATT-AGGGTTAAAAATGGGATTTTGGAAAATTTAAGGGT
1 AAAATGGTAATTTTGGTAAAATTGA-GGTTAAAAATGGAATTTTGGAAAGTTCAAGGGT
*
17574973 AAAATGGTAATTTTGGTAAAA-TCAGGGTT-AAAATAGG-ATTTTGGAAAGTTCAAGGGT
1 AAAATGGTAATTTTGGTAAAATTGA-GGTTAAAAAT-GGAATTTTGGAAAGTTCAAGGGT
*
17575030 AAAATGGTAATTTTTGGTAAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTCAGGGGT
1 AAAATGGTAA-TTTTGGTAAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTCAAGGGT
* * *
17575089 AAAAATGGTGATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTG
1 -AAAATGGT-AATTTTGGTAAAATTGAGGTTAAAAATGGAATTTTG
17575135 TTTTAGGGTG
Statistics
Matches: 195, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
56 8 0.04
57 72 0.37
58 48 0.25
59 26 0.13
60 40 0.21
61 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.26, T:0.35
Consensus pattern (58 bp):
AAAATGGTAATTTTGGTAAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTCAAGGGT
Found at i:17575195 original size:29 final size:29
Alignment explanation
Indices: 17575134--17575278 Score: 130
Period size: 30 Copynumber: 4.9 Consensus size: 29
17575124 ATGGAATTTT
* * * *
17575134 GTTTTAGGGTGAAAATAGTAATTTTTGGTA
1 GTTTTGGGGTCAAAATA-TAATTTTTAGAA
* * *
17575164 GTTTCGGGGTTAACATATAATTTTTAGAA
1 GTTTTGGGGTCAAAATATAATTTTTAGAA
* *
17575193 GTTTTGAGGTCAAAAATGTAA-TTTTAGAGGA
1 GTTTTGGGGTC-AAAATATAATTTTTAGA--A
** *
17575224 GTTTAAGGGTCAAAATGTAATTTTTAGAAA
1 GTTTTGGGGTCAAAATATAATTTTTAG-AA
17575254 GTTTTGGGGTCAAAATATAATTTTT
1 GTTTTGGGGTCAAAATATAATTTTT
17575279 GAATAGTTTA
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
29 25 0.27
30 52 0.56
31 15 0.16
32 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.23, T:0.41
Consensus pattern (29 bp):
GTTTTGGGGTCAAAATATAATTTTTAGAA
Found at i:17575235 original size:31 final size:29
Alignment explanation
Indices: 17575200--17575288 Score: 97
Period size: 30 Copynumber: 2.9 Consensus size: 29
17575190 GAAGTTTTGA
*
17575200 GGTCAAAAATGTAATTTTAGAGGAGTTTAAG
1 GGTC-AAAATGTAATTTTAGA-AAGTTTAAG
**
17575231 GGTCAAAATGTAATTTTTAGAAAGTTTTGG
1 GGTCAAAATGTAA-TTTTAGAAAGTTTAAG
* *
17575261 GGTCAAAATATAATTTTTGAATAGTTTA
1 GGTCAAAATGTAATTTTAGAA-AGTTTA
17575289 TGGACCTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 7 0.14
30 32 0.64
31 11 0.22
ACGTcount: A:0.37, C:0.03, G:0.21, T:0.38
Consensus pattern (29 bp):
GGTCAAAATGTAATTTTAGAAAGTTTAAG
Found at i:17575287 original size:60 final size:59
Alignment explanation
Indices: 17575134--17575288 Score: 168
Period size: 60 Copynumber: 2.6 Consensus size: 59
17575124 ATGGAATTTT
* * ** * *
17575134 GTTTTAGGGTGAAAATAGTAATTTTTG-GTAGTTTCGGGGTTAACATATAATTTTTAGAA
1 GTTTTGGGGTCAAAATA-TAATTTTTGAGTAGTTTAAGGGTCAAAATATAATTTTTAGAA
* * * * *
17575193 GTTTTGAGGTCAAAAATGTAATTTTAGAGGAGTTTAAGGGTCAAAATGTAATTTTTAGAAA
1 GTTTTGGGGTC-AAAATATAATTTTTGAGTAGTTTAAGGGTCAAAATATAATTTTTAG-AA
*
17575254 GTTTTGGGGTCAAAATATAATTTTTGAATAGTTTA
1 GTTTTGGGGTCAAAATATAATTTTTGAGTAGTTTA
17575289 TGGACCTATA
Statistics
Matches: 77, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
59 16 0.21
60 49 0.64
61 12 0.16
ACGTcount: A:0.34, C:0.03, G:0.23, T:0.41
Consensus pattern (59 bp):
GTTTTGGGGTCAAAATATAATTTTTGAGTAGTTTAAGGGTCAAAATATAATTTTTAGAA
Found at i:17576250 original size:15 final size:15
Alignment explanation
Indices: 17576232--17576293 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
17576222 TTTCTCTTTT
17576232 TTATTATTATTAAAA
1 TTATTATTATTAAAA
17576247 TTATTATTA--AAAA
1 TTATTATTATTAAAA
* *
17576260 -TATTAATATT-ATA
1 TTATTATTATTAAAA
*
17576273 TTCATTACTATTAAAA
1 TT-ATTATTATTAAAA
17576289 CTTAT
1 -TTAT
17576294 AACTGTTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 11
0.71 0.08 0.21
Matches are distributed among these distances:
12 7 0.19
13 6 0.16
14 1 0.03
15 17 0.46
16 4 0.11
17 2 0.05
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATTATTATTAAAA
Found at i:17576251 original size:12 final size:12
Alignment explanation
Indices: 17576234--17576264 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
17576224 TCTCTTTTTT
17576234 ATTATTATTAAA
1 ATTATTATTAAA
17576246 ATTATTATTAAA
1 ATTATTATTAAA
*
17576258 AATATTA
1 ATTATTA
17576265 ATATTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTATTATTAAA
Found at i:17577150 original size:17 final size:17
Alignment explanation
Indices: 17577110--17577169 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
17577100 GGTTAATCTC
* **
17577110 AATTTAAATTTCAATTA
1 AATTTAAATTTAAAACA
* * *
17577127 AACTTAAATTTAGAGCA
1 AATTTAAATTTAAAACA
*
17577144 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAACA
17577161 AATTTAAAT
1 AATTTAAAT
17577170 CCATTTTAAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (17 bp):
AATTTAAATTTAAAACA
Found at i:17577897 original size:200 final size:200
Alignment explanation
Indices: 17577535--17578364 Score: 1268
Period size: 200 Copynumber: 4.1 Consensus size: 200
17577525 TTCATTGACC
* * * * * *
17577535 TGGTCTTCTTCTTTGTGTCTTATCAGGAAGATGACCGCAAT-TATCTGTTTTAATTCGCTTCTCT
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGC-CTCTGT-TGTTTTAATTCGCTTCTCT
* * * * * *
17577599 GGATCTCCTGAGGAAGACGAATTCGGTCCACTTCTCTATATCTTATCAGGAAGCTAACCTTTTTA
64 GGATCTCCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTA
* * * * * *
17577664 TTGCTTCAACTTGCTTCTCAATGTCTTATCAGGAAGCTGGGTTCGAAGATTTGCTCGCATTGAGC
129 TTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTTGCTCGCGTTGAGC
17577729 GTTGAGT
194 GTTGAGT
* * *
17577736 TGGTATTCTTCTCTGTGTCTCATCAGGAAGATGGCCACCTC-GCTTGTTTTAATTCGCTTCTCTG
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTG-TTGTTTTAATTCGCTTCTCTG
* * *
17577800 GATCTCCTCAAGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCATTTTAT
65 GATCTCCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTAT
* *
17577865 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTAGCTCGTGTTGAGCG
130 TGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTTGCTCGCGTTGAGCG
17577930 TTGAGT
195 TTGAGT
*
17577936 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTGTTGTTTTAATTTGCTTCTCTGG
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTGTTGTTTTAATTCGCTTCTCTGG
*
17578001 ATCTCCTCAGGAAGACAAATTTGGTCCACTTCTTTGTATCTCATCAGGAAGCTAACCATTTTATT
66 ATCTCCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
* * * *
17578066 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACAAAGATTGGCTCGTGCTGAGCGT
131 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTTGCTCGCGTTGAGCGT
17578131 TGAGT
196 TGAGT
* *
17578136 TGGTATTCTTCTCTGTATCTCATCAAGAAGATGACCGCCTCTGTTGTTTTAATTTGCTTCTCTGG
1 TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTGTTGTTTTAATTCGCTTCTCTGG
*
17578201 ATCTTCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
66 ATCTCCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
* * * *
17578266 GTTTCGACCTGCTTCTTAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGCTTTGAGCGT
131 GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTTGCTCGCGTTGAGCGT
17578331 TGAGT
196 TGAGT
17578336 TGGTATTCTTCTCTGTATCTCATCAGGAA
1 TGGTATTCTTCTCTGTATCTCATCAGGAA
17578365 AATTACTGCC
Statistics
Matches: 581, Mismatches: 45, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
200 546 0.94
201 35 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (200 bp):
TGGTATTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCTGTTGTTTTAATTCGCTTCTCTGG
ATCTCCTCAGGAAGACAAATTTGGTCCACTTCTCTGTATCTCATCAGGAAGCTAACCATTTTATT
GCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTACGAAGATTTGCTCGCGTTGAGCGT
TGAGT
Found at i:17581968 original size:86 final size:86
Alignment explanation
Indices: 17581867--17582084 Score: 287
Period size: 86 Copynumber: 2.5 Consensus size: 86
17581857 TGTTTCTTCT
* * * *
17581867 GATAAAAATATATTAGCTTTTTTAGAGCCTTGAATTAATTTTGTTCTATGATATATTAATATGTT
1 GATAAAAATATATTAGCTCTTTTAGAGCCTT-AATTAATTTTGTACTATGAAATATTAACATGTT
*
17581932 CCATTACCACATTGAACAT-AG
65 CCATTACCACATTGAACATAAC
* *
17581953 GATAAAAATATATTAGCTCTTTTGGAGCCTTAAATTAATTTTGTACTGTGAAATATTAACATGTT
1 GATAAAAATATATTAGCTCTTTTAGAGCCTT-AATTAATTTTGTACTATGAAATATTAACATGTT
* *
17582018 TCATTATCACATTGAACATAAC
65 CCATTACCACATTGAACATAAC
* * *
17582040 G-TAATAATATATTAGCTCTTCTAGAGCCCTAAGTTAATTTTGTAC
1 GATAAAAATATATTAGCTCTTTTAGAGCCTTAA-TTAATTTTGTAC
17582085 CCCCAAAGAT
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
85 2 0.02
86 112 0.97
87 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (86 bp):
GATAAAAATATATTAGCTCTTTTAGAGCCTTAATTAATTTTGTACTATGAAATATTAACATGTTC
CATTACCACATTGAACATAAC
Found at i:17583309 original size:30 final size:30
Alignment explanation
Indices: 17583245--17583309 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
17583235 CCTGCTTGAG
* *
17583245 GTGTGTCCCTGTCTGTGCTACATGCTTGTT
1 GTGTGTCCCTGTCTGTGCTACATGATTGTC
* *
17583275 GTGTGTCTCTGTCTGTGCTATAT-ATTCGTC
1 GTGTGTCCCTGTCTGTGCTACATGATT-GTC
17583305 GTGTG
1 GTGTG
17583310 ATATTACTCG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.08, C:0.20, G:0.28, T:0.45
Consensus pattern (30 bp):
GTGTGTCCCTGTCTGTGCTACATGATTGTC
Found at i:17586776 original size:29 final size:30
Alignment explanation
Indices: 17586724--17586787 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
17586714 AGTTTATATA
*
17586724 TTTATAATTTTTAAAAGATTAAATCAAAAT
1 TTTATAATTTTTAAAAGATCAAATCAAAAT
* * * *
17586754 TTTATAA-TTTTAGAGGATCAAATTATAAT
1 TTTATAATTTTTAAAAGATCAAATCAAAAT
17586783 TTTAT
1 TTTAT
17586788 TTTTACTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (30 bp):
TTTATAATTTTTAAAAGATCAAATCAAAAT
Found at i:17587168 original size:34 final size:29
Alignment explanation
Indices: 17587130--17587196 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 29
17587120 TATTTTTAAA
17587130 TTTTAAAAAATTCAAAAATATATATAGAAAATAT
1 TTTTAAAAAATT--AAAAT-T-TATA-AAAATAT
17587164 TTTTAAAAAATTAAAATTTATAAAAATAT
1 TTTTAAAAAATTAAAATTTATAAAAATAT
17587193 TTTT
1 TTTT
17587197 TGTTTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
29 11 0.33
30 4 0.12
31 1 0.03
32 5 0.15
34 12 0.36
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (29 bp):
TTTTAAAAAATTAAAATTTATAAAAATAT
Found at i:17587991 original size:23 final size:24
Alignment explanation
Indices: 17587961--17588007 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
17587951 TTTAAAAAAA
17587961 AATATTT-AT-ATTATATTTATTTT
1 AATATTTAATAATTA-ATTTATTTT
17587984 AATATTTAATAATTAATTTATTTT
1 AATATTTAATAATTAATTTATTTT
17588008 TTATTTGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.32
24 11 0.50
25 4 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
AATATTTAATAATTAATTTATTTT
Found at i:17589258 original size:29 final size:30
Alignment explanation
Indices: 17589203--17589267 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
17589193 TAAAAATTAA
*
17589203 TTAATTTTTTAAAAATATTGATAATCAAAT
1 TTAATTTTTTAAAAATATTGAAAATCAAAT
* *
17589233 TTAATTTTTTTAAAA-ATT-AAAGATCAGAT
1 TTAATTTTTTAAAAATATTGAAA-ATCAAAT
17589262 TTAATT
1 TTAATT
17589268 AAAAATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 2 0.06
29 15 0.48
30 14 0.45
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (30 bp):
TTAATTTTTTAAAAATATTGAAAATCAAAT
Found at i:17590341 original size:21 final size:19
Alignment explanation
Indices: 17590289--17590348 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 19
17590279 TTTTTTAGAT
17590289 AATT-AGATTATTTTCTTTA
1 AATTAAGATTATTTT-TTTA
17590308 AATTAAGAGTTATTTTTTTA
1 AATTAAGA-TTATTTTTTTA
* *
17590328 ATTTAATGTATTATTTGTTTA
1 AATTAA-G-ATTATTTTTTTA
17590349 TTTCATTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.11
20 12 0.34
21 18 0.51
22 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
AATTAAGATTATTTTTTTA
Found at i:17592921 original size:1 final size:1
Alignment explanation
Indices: 17592888--17592913 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
17592878 AAAATTTAGC
17592888 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
17592914 GAGAAAAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:17593306 original size:24 final size:25
Alignment explanation
Indices: 17593278--17593324 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
17593268 TAATGTTCAT
17593278 TTAACCGAATTAACC-AAATTAAAA
1 TTAACCGAATTAACCAAAATTAAAA
*
17593302 TTAACTGAATTAACCAAAATTAA
1 TTAACCGAATTAACCAAAATTAA
17593325 CCTAATTGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.53, C:0.15, G:0.04, T:0.28
Consensus pattern (25 bp):
TTAACCGAATTAACCAAAATTAAAA
Found at i:17595047 original size:302 final size:298
Alignment explanation
Indices: 17594487--17595054 Score: 714
Period size: 302 Copynumber: 1.9 Consensus size: 298
17594477 GCATCAATTA
* ** *
17594487 GATTAGTAAAATCTTAAATTTACCACTAAACCAAAGTTTCATTTAAACATATTTTTATACATTTT
1 GATTACTAAAATCTTAAATTTACCACTAAACCAAAACTTCATTTAAACATATTTTTATACAATTT
* * * * *
17594552 TATTTTAATATACACAATTTATTATCTCCATCAGTTGTATATCTATACTATTAATAAAGCTCCTG
66 TATTTTAATACACACAATTTATGATCTCCATAAATTGTATACCTATACTATTAATAAAGCTCCTG
* * *
17594617 ACTGAATTGATGTCACGAGTTAATCGAACACTAACTCGGTTAAGAAATTATGAAAATGTTCATCC
131 ACTGAATTGATGTCACGAGTTAATCGAACACCAACTCAGTTAAGAAATTATGAAAATATTCATCC
* * * *
17594682 GTAATTAAAATAAGTTATATTATTTGAAAGTATTTTAGTATTTTCATTTTAAGAAAGACCAATAA
196 GTAATTAAAATAAATTATATTATTTGAAAGTATTTTAATATTTTCATTTAAAGAAAAACCAATAA
17594747 AAATATACATGTTGTGAGATTTGAACCCATGTTCATTG
261 AAATATACATGTTGTGAGATTTGAACCCATGTTCATTG
**
17594785 GATTACTAAAA-CTGTAAATTTACTTCTAAACCAAAACTTCACTTT-AACATA-TTTTATACAAT
1 GATTACTAAAATCT-TAAATTTACCACTAAACCAAAACTTCA-TTTAAACATATTTTTATACAAT
*
17594847 TTTATTTTAATACGCACAATTTATGATCTCCATAAATTGTATACCTATACTTACTATCAATAAA-
64 TTTATTTTAATACACACAATTTATGATCTCCATAAATTGTATACCTATAC-TA-T-T-AATAAAG
* * * * * * * *
17594911 ATCTCTGATTGAGTTGGTGTCATGAGTTAATTGGACACCAACTTAGTTAAGAAAATTATGAAAAT
125 CTC-CTGACTGAATTGATGTCACGAGTTAATCGAACACCAACTCAGTTAAG-AAATTATGAAAAT
* ** * * *
17594976 ATTCTTTTGTAATTAAAATAAATTATATTATTTG-AAGATATTTTAATCTTTTTATTTAAATAAA
188 ATTCATCCGTAATTAAAATAAATTATATTATTTGAAAG-TATTTTAATATTTTCATTTAAAGAAA
*
17595040 AACCAATACAAATAT
252 AACCAATAAAAATAT
17595055 GTTTATTTTT
Statistics
Matches: 227, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
297 56 0.25
298 41 0.18
299 4 0.02
300 3 0.01
301 47 0.21
302 76 0.33
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (298 bp):
GATTACTAAAATCTTAAATTTACCACTAAACCAAAACTTCATTTAAACATATTTTTATACAATTT
TATTTTAATACACACAATTTATGATCTCCATAAATTGTATACCTATACTATTAATAAAGCTCCTG
ACTGAATTGATGTCACGAGTTAATCGAACACCAACTCAGTTAAGAAATTATGAAAATATTCATCC
GTAATTAAAATAAATTATATTATTTGAAAGTATTTTAATATTTTCATTTAAAGAAAAACCAATAA
AAATATACATGTTGTGAGATTTGAACCCATGTTCATTG
Found at i:17601871 original size:88 final size:83
Alignment explanation
Indices: 17601672--17601914 Score: 285
Period size: 88 Copynumber: 2.8 Consensus size: 83
17601662 CTTAAGGGTG
17601672 TAAAAAGCCCTCAAACTTTTTCAAAAAAAACAATTAAG--TTTTTTTTTT-CACTCAATTGGGTA
1 TAAAAAGCCCTCAAACTTTTTC-AAAAAAACAATTAAGCCTTTTTTTTTTGCACTCAATTGGGTA
*
17601734 CTTAAACTACCAAAATACA
65 CTTGAACTACCAAAATACA
*
17601753 TAAAAAGGCCCTCAAACTATTTCAAGAAAAACAATTAAGCCTTTACATTTTTTTGCACTCAATTG
1 TAAAAA-GCCCTCAAACTTTTTCAA-AAAAACAATTAAGCCTTT---TTTTTTTGCACTCAATTG
** * *
17601818 GGTACTTGAACTTTCGAAATGCA
61 GGTACTTGAACTACCAAAATACA
* * * *
17601841 TCAAAAAGACCATCATACTTTTTCAAAAAAAAAATTAAGCCCCTGTTTTTTTTGCACTCAATTGG
1 T-AAAAAG-CCCTCAAACTTTTTCAAAAAAACAATTAAG--CCTTTTTTTTTTGCACTCAATTGG
17601906 GTACTTGAA
62 GTACTTGAA
17601915 AACCACTCCT
Statistics
Matches: 139, Mismatches: 11, Indels: 18
0.83 0.07 0.11
Matches are distributed among these distances:
81 8 0.06
82 28 0.20
84 3 0.02
87 35 0.25
88 42 0.30
89 19 0.14
90 4 0.03
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (83 bp):
TAAAAAGCCCTCAAACTTTTTCAAAAAAACAATTAAGCCTTTTTTTTTTGCACTCAATTGGGTAC
TTGAACTACCAAAATACA
Found at i:17602006 original size:6 final size:7
Alignment explanation
Indices: 17601981--17602026 Score: 76
Period size: 7 Copynumber: 6.6 Consensus size: 7
17601971 ACACGTGGCA
17601981 AAAATAAT
1 AAAA-AAT
17601989 AAAAAAT
1 AAAAAAT
17601996 AAAAAAT
1 AAAAAAT
17602003 AAAAAAT
1 AAAAAAT
17602010 AAAAAAT
1 AAAAAAT
17602017 -AAAAAT
1 AAAAAAT
17602023 AAAA
1 AAAA
17602027 GTTATAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
6 6 0.16
7 27 0.73
8 4 0.11
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Done.