Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 88 of 144
Found at i:20432514 original size:200 final size:199
Alignment explanation
Indices: 20432165--20432798 Score: 858
Period size: 200 Copynumber: 3.2 Consensus size: 199
20432155 AGACGGCGAG
* * * *
20432165 GCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAATTTAACGCTCAACA-CAAGCCAATCT
1 GCGGTCATCTTCCTGATGAGATACAGAGAAGAATA-CAAATCAACGCTCAA-AGCGAGCAAATCT
* * *
20432229 TCGTACCCAGCTTCCTGATGTGACACTGAGAAGCAAGTCGAAACAATAAAATGGTTAGCTTCTTG
64 TCGTACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTG
* *
20432294 ATGAGATACAGAGAAGTGGACCAAATTCGTCTTCATGAGGACATCCAGAGAAGCGAATTAAAACA
129 ATGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACA
20432359 AGTGAT
194 AGTGAT
* *
20432365 GCGGTTATCTTCCTGATGAGATACAGAGAAGAATACAAACTCAATGCTCAAAGCGAGCAAATCTT
1 GCGGTCATCTTCCTGATGAGATACAGAGAAGAATACAAA-TCAACGCTCAAAGCGAGCAAATCTT
* * *
20432430 CGTACCCAGCTTCCTGATGAGACACTGAGAAGTAGGTCGAAACAATAACATGGTTAGTTTCCTGA
65 CGTACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGA
* * * **
20432495 TGAGATATAGAGAAGTGGACCAAATTTGTCTTCCTAAGGAGATCCAGAGAAGAAAATTAAAACAA
130 TGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAA
** *
20432560 CAGAG
195 GTGAT
* * * *
20432565 GCGATCATCTTCCTGATGAGATACAAAGAAGAATACCAAATCAACACTCAACGCGAGCAAATCTT
1 GCGGTCATCTTCCTGATGAGATACAGAGAAGAATA-CAAATCAACGCTCAAAGCGAGCAAATCTT
* * * * *
20432630 CGAACCCAGCTTCTTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAAAGGTTAGCTTCCTGA
65 CGTACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGA
* * * *
20432695 TAAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCGGAGAAGCGAATTAAAA-TA
130 TGAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAA
20432759 GATGATT
195 G-TGA-T
* * *
20432766 GCGGCCATCTTCCTGATGAGACACAGGGAAGAA
1 GCGGTCATCTTCCTGATGAGATACAGAGAAGAA
20432799 GACCAGGTTA
Statistics
Matches: 376, Mismatches: 53, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
199 5 0.01
200 339 0.90
201 32 0.09
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (199 bp):
GCGGTCATCTTCCTGATGAGATACAGAGAAGAATACAAATCAACGCTCAAAGCGAGCAAATCTTC
GTACCCAGCTTCCTGATGAGACACTGAGAAGCAGGTCGAAACAATAAAATGGTTAGCTTCCTGAT
GAGATACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAG
TGAT
Found at i:20435203 original size:29 final size:29
Alignment explanation
Indices: 20435137--20435272 Score: 97
Period size: 30 Copynumber: 4.6 Consensus size: 29
20435127 GCTCTCTAGT
*
20435137 CCCC-AAACTTTCC-AAAATTCCATTTTTGA
1 CCCCTAAACTTTCCAAAAATTAC-TTTTT-A
* *
20435166 CCTCGAAAC-TTCCAAAAATTACTATTTTA
1 CCCCTAAACTTTCCAAAAATTACT-TTTTA
*
20435195 CCCCTAAACTTTCC-AAAATTCCACTTTTAA
1 CCCCTAAACTTTCCAAAAATT--ACTTTTTA
20435225 CCCC--AA-TTTCACCCAAAAATTACTGTTTTA
1 CCCCTAAACTTT---CCAAAAATTACT-TTTTA
*
20435255 CCCTTAAACTTTCCAAAA
1 CCCCTAAACTTTCCAAAA
20435273 TTTCATTTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 27
0.72 0.06 0.22
Matches are distributed among these distances:
27 3 0.03
28 2 0.02
29 25 0.29
30 42 0.49
31 9 0.10
32 2 0.02
33 3 0.03
ACGTcount: A:0.35, C:0.30, G:0.02, T:0.33
Consensus pattern (29 bp):
CCCCTAAACTTTCCAAAAATTACTTTTTA
Found at i:20435209 original size:30 final size:29
Alignment explanation
Indices: 20435137--20435330 Score: 95
Period size: 30 Copynumber: 6.6 Consensus size: 29
20435127 GCTCTCTAGT
*
20435137 CCCCAAACTTTCC-AAAATT-CCATTTTTGA
1 CCCCAAACTTTCCAAAAATTACTA-TTTT-A
*
20435166 CCTCGAAAC-TTCCAAAAATTACTATTTTA
1 CC-CCAAACTTTCCAAAAATTACTATTTTA
*
20435195 CCCCTAAACTTTCC-AAAATTCCACT-TTTAA
1 CCCC-AAACTTTCCAAAAATT--ACTATTTTA
*
20435225 CCCC-AA-TTTCACCCAAAAATTACTGTTTTA
1 CCCCAAACTTT---CCAAAAATTACTATTTTA
* *
20435255 CCCTTAAACTTTCC-AAAATTTC-ATTTTTGA
1 CCC-CAAACTTTCCAAAAATTACTA-TTTT-A
* * *
20435285 CCCC-GA-TTTCACCCAAAATTACCATTTTA
1 CCCCAAACTTT--CCAAAAATTACTATTTTA
20435314 TCCCCAAACTTTCCAAA
1 -CCCCAAACTTTCCAAA
20435331 TTCCATTTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 47
0.68 0.07 0.25
Matches are distributed among these distances:
27 6 0.05
28 4 0.03
29 36 0.28
30 61 0.48
31 13 0.10
32 5 0.04
33 3 0.02
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.34
Consensus pattern (29 bp):
CCCCAAACTTTCCAAAAATTACTATTTTA
Found at i:20435255 original size:60 final size:60
Alignment explanation
Indices: 20435137--20435356 Score: 256
Period size: 60 Copynumber: 3.7 Consensus size: 60
20435127 GCTCTCTAGT
* * *
20435137 CCCC-AAACTTTCCAAAATTCCATTTTTGACCTCGAAACTT---CCAAAAATTACTATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACC-C-CAATTTCACCCAAAAATTACTATTTTA
* *
20435195 CCCCTAAACTTTCCAAAATTCCACTTTTAACCCCAATTTCACCCAAAAATTACTGTTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCCAAAAATTACTATTTTA
* * * * *
20435255 CCCTTAAACTTTCCAAAATTTCATTTTTGACCCCGATTTCACCC-AAAATTACCATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCCAAAAATTACTATTTTA
* *
20435314 TCCCC-AAACTTTCC-AAATTCCATTTTTAACCCTAATTTTACCC
1 -CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCC
20435357 CCGAACCTTC
Statistics
Matches: 139, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
57 4 0.03
58 29 0.21
59 47 0.34
60 59 0.42
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.35
Consensus pattern (60 bp):
CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCCAAAAATTACTATTTTA
Found at i:20440266 original size:24 final size:24
Alignment explanation
Indices: 20440140--20440278 Score: 224
Period size: 24 Copynumber: 5.8 Consensus size: 24
20440130 GCACAGACAA
* *
20440140 GTTAGCCCTCACGAGCCCAGAATG
1 GTTAGCTCTTACGAGCCCAGAATG
20440164 GTTAGCTCTTACGAGCCCAGAATG
1 GTTAGCTCTTACGAGCCCAGAATG
* *
20440188 GTTAGCTCTTACGAACCCAAAATG
1 GTTAGCTCTTACGAGCCCAGAATG
*
20440212 GTTAGCTCTTATGAGCCCAGAATG
1 GTTAGCTCTTACGAGCCCAGAATG
20440236 GTTAGCTCTTACGAGCCCAGAATG
1 GTTAGCTCTTACGAGCCCAGAATG
*
20440260 GTTAGCTCTTACAAGCCCA
1 GTTAGCTCTTACGAGCCCA
20440279 AAATCAAAAT
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 106 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (24 bp):
GTTAGCTCTTACGAGCCCAGAATG
Found at i:20440316 original size:27 final size:27
Alignment explanation
Indices: 20440263--20440365 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
20440253 CAGAATGGTT
* *
20440263 AGCTCTTACAAGCCCAAAATCAAAATAA
1 AGCTCTTTCAAG-CCAAAATCAGAATAA
*
20440291 AGCTCTTTCAAGCCAAAATTAGAATAA
1 AGCTCTTTCAAGCCAAAATCAGAATAA
* * *
20440318 TGCTCTTTCAAGCTAGAATCAGAATAA
1 AGCTCTTTCAAGCCAAAATCAGAATAA
* *
20440345 TGCTCTTTCGAGCCAAAATCA
1 AGCTCTTTCAAGCCAAAATCA
20440366 AATTACTCCT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
27 54 0.83
28 11 0.17
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (27 bp):
AGCTCTTTCAAGCCAAAATCAGAATAA
Found at i:20453538 original size:16 final size:16
Alignment explanation
Indices: 20453519--20453566 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
20453509 AACAATTTAA
*
20453519 AATAAATTAAAAAGTT
1 AATAAATTAAAAAATT
20453535 AATAAATTAAATAAATT
1 AATAAATTAAA-AAATT
*
20453552 AAGAAATTAGAAAAA
1 AATAAATTA-AAAAA
20453567 AAATTCTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 11 0.39
17 15 0.54
18 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (16 bp):
AATAAATTAAAAAATT
Found at i:20458505 original size:15 final size:15
Alignment explanation
Indices: 20458487--20458525 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
20458477 AAACTAGTTT
*
20458487 TGGTTTTGGTGAGAC
1 TGGTTTTGGTGAAAC
* *
20458502 TGGTTCTGATGAAAC
1 TGGTTTTGGTGAAAC
20458517 TGGTTTTGG
1 TGGTTTTGG
20458526 CAAAGTTGGA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.15, C:0.08, G:0.36, T:0.41
Consensus pattern (15 bp):
TGGTTTTGGTGAAAC
Found at i:20472252 original size:15 final size:15
Alignment explanation
Indices: 20472234--20472269 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
20472224 TATTCTAAAC
20472234 TAAATT-AAACTAAGT
1 TAAATTAAAACTAA-T
20472249 TAAATTAAAACTAAT
1 TAAATTAAAACTAAT
20472264 TAAATT
1 TAAATT
20472270 CCTATGCACG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.36
Consensus pattern (15 bp):
TAAATTAAAACTAAT
Found at i:20474397 original size:24 final size:24
Alignment explanation
Indices: 20474370--20474424 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
20474360 ACAATTAATT
* *
20474370 CATTTTATATTTCATTTGCATTGA
1 CATTTTATATTACATTTGCACTGA
*
20474394 CATTTTGTATTACATTTGCACTGA
1 CATTTTATATTACATTTGCACTGA
20474418 CAATTTT
1 C-ATTTT
20474425 TACTCTTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (24 bp):
CATTTTATATTACATTTGCACTGA
Found at i:20482229 original size:18 final size:19
Alignment explanation
Indices: 20482206--20482250 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
20482196 GTATTGAGGC
20482206 AGAAGAAGAA-GAA-ATAAA
1 AGAAGAAGAAGGAAGA-AAA
20482224 AGAAG-AGAAGGAAGAAAA
1 AGAAGAAGAAGGAAGAAAA
20482242 AGAAGAAGA
1 AGAAGAAGA
20482251 TGTTGCCCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (19 bp):
AGAAGAAGAAGGAAGAAAA
Found at i:20482239 original size:21 final size:20
Alignment explanation
Indices: 20482209--20482250 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
20482199 TTGAGGCAGA
20482209 AGAAGAAGAAATAA-AAGAAG
1 AGAAGAAGAAA-AAGAAGAAG
20482229 AGAAGGAAGAAAAAGAAGAAG
1 AGAA-GAAGAAAAAGAAGAAG
20482250 A
1 A
20482251 TGTTGCCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (20 bp):
AGAAGAAGAAAAAGAAGAAG
Found at i:20482664 original size:16 final size:16
Alignment explanation
Indices: 20482640--20482678 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
20482630 TTGCATGCAT
*
20482640 TTTTTTTGTCATTACA
1 TTTTATTGTCATTACA
* *
20482656 TTTTATTGTCCTTGCA
1 TTTTATTGTCATTACA
20482672 TTTTATT
1 TTTTATT
20482679 TGTTTTCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.15, C:0.13, G:0.08, T:0.64
Consensus pattern (16 bp):
TTTTATTGTCATTACA
Found at i:20490185 original size:21 final size:23
Alignment explanation
Indices: 20490154--20490209 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
20490144 AGAAAAATTA
*
20490154 AAAAGAAAAGAAAAATGAGT-AG
1 AAAACAAAAGAAAAATGAGTAAG
**
20490176 -AAACAAAAGAATCATGAGTAAG
1 AAAACAAAAGAAAAATGAGTAAG
*
20490198 AAAACATAAGAA
1 AAAACAAAAGAA
20490210 TAGTGACAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 16 0.57
22 2 0.07
23 10 0.36
ACGTcount: A:0.66, C:0.05, G:0.18, T:0.11
Consensus pattern (23 bp):
AAAACAAAAGAAAAATGAGTAAG
Found at i:20503395 original size:27 final size:27
Alignment explanation
Indices: 20503364--20503418 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
20503354 GATTATCAGA
20503364 AGTTTGTTTCTACGTTGAAGCAATTAC
1 AGTTTGTTTCTACGTTGAAGCAATTAC
**
20503391 AGTTTGTTTCTATTTTGAAGCAATTAC
1 AGTTTGTTTCTACGTTGAAGCAATTAC
20503418 A
1 A
20503419 CATTAACATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (27 bp):
AGTTTGTTTCTACGTTGAAGCAATTAC
Found at i:20518436 original size:11 final size:11
Alignment explanation
Indices: 20518420--20518447 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
20518410 TGATAGCTAG
20518420 AATTTCTATAC
1 AATTTCTATAC
20518431 AATTTCTATAC
1 AATTTCTATAC
20518442 AATTTC
1 AATTTC
20518448 CCATGCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTCTATAC
Found at i:20520473 original size:20 final size:20
Alignment explanation
Indices: 20520450--20520510 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
20520440 CTTTAATATC
*
20520450 TTTGTATGCATTTCGGTGTT
1 TTTGTATGTATTTCGGTGTT
* * *
20520470 TTTGTTTGTACTTT-AGTATT
1 TTTGTATGTA-TTTCGGTGTT
*
20520490 TTTGTATGTACTTCGGTGTT
1 TTTGTATGTATTTCGGTGTT
20520510 T
1 T
20520511 CTGTTTGCAC
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
19 2 0.06
20 26 0.84
21 3 0.10
ACGTcount: A:0.11, C:0.08, G:0.21, T:0.59
Consensus pattern (20 bp):
TTTGTATGTATTTCGGTGTT
Found at i:20520483 original size:40 final size:40
Alignment explanation
Indices: 20520430--20520522 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
20520420 TTAAGATGTA
*
20520430 TCTGTATT-CACTTTAATATCTTTGTATGCATTTCGGTGTT
1 TCTGT-TTGCACTTTAATATCTTTGTATGCACTTCGGTGTT
* * * * *
20520470 TTTGTTTGTACTTTAGTATTTTTGTATGTACTTCGGTGTT
1 TCTGTTTGCACTTTAATATCTTTGTATGCACTTCGGTGTT
20520510 TCTGTTTGCACTT
1 TCTGTTTGCACTT
20520523 CTTCGATGCC
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.14, C:0.13, G:0.17, T:0.56
Consensus pattern (40 bp):
TCTGTTTGCACTTTAATATCTTTGTATGCACTTCGGTGTT
Found at i:20521602 original size:13 final size:13
Alignment explanation
Indices: 20521584--20521626 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
20521574 TTGAATTTTT
20521584 TTCGAATTTCGAG
1 TTCGAATTTCGAG
20521597 TTCGAA-TT-GAG
1 TTCGAATTTCGAG
*
20521608 TT-GAATTTCGAA
1 TTCGAATTTCGAG
20521620 TTCGAAT
1 TTCGAAT
20521627 AATTTGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 3 0.12
11 7 0.27
12 6 0.23
13 10 0.38
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.40
Consensus pattern (13 bp):
TTCGAATTTCGAG
Found at i:20550996 original size:18 final size:18
Alignment explanation
Indices: 20550970--20551009 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
20550960 TATAGATACA
* *
20550970 ATTTTATTTACTTACTTT
1 ATTTGATTTACTTAATTT
*
20550988 ATTTGATTTATTTAATTT
1 ATTTGATTTACTTAATTT
20551006 ATTT
1 ATTT
20551010 TTCGTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTGATTTACTTAATTT
Found at i:20564749 original size:3 final size:3
Alignment explanation
Indices: 20564741--20564765 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
20564731 GGAGTTTTAA
20564741 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
20564766 GCTAGTTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:20574663 original size:13 final size:13
Alignment explanation
Indices: 20574647--20574681 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
20574637 AAAATGAGAA
20574647 AAAAAAAAAAAAG
1 AAAAAAAAAAAAG
* *
20574660 AAAAGAAAAGAAG
1 AAAAAAAAAAAAG
20574673 AAAAAAAAA
1 AAAAAAAAA
20574682 TGTTTGCTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:20597466 original size:52 final size:52
Alignment explanation
Indices: 20597388--20597490 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
20597378 AATGAAAAAG
* * *
20597388 GGTCCGGTGACTATGTGTCATCGTGAGTATATGATTCTTTTACGGATTATGA
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
*
20597440 GGTCCGATGGCTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
20597491 TGTCGTCGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (52 bp):
GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGA
Found at i:20597491 original size:36 final size:36
Alignment explanation
Indices: 20597451--20597526 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
20597441 GTCCGATGGC
20597451 TATGTGTCATCGTGAGTATATGAATCCTTTACGGAT
1 TATGTGTCATCGTGAGTATATGAATCCTTTACGGAT
*
20597487 TATGTGTCGTCGTGAGTATATGAATCCTTTACGGAT
1 TATGTGTCATCGTGAGTATATGAATCCTTTACGGAT
20597523 TATG
1 TATG
20597527 AGGTCAGATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (36 bp):
TATGTGTCATCGTGAGTATATGAATCCTTTACGGAT
Found at i:20597548 original size:88 final size:88
Alignment explanation
Indices: 20597399--20597578 Score: 306
Period size: 88 Copynumber: 2.0 Consensus size: 88
20597389 GTCCGGTGAC
* * *
20597399 TATGTGTCATCGTGAGTATATGATTCTTTTACGGATTATGAGGTCCGATGGCTATGTGTCATCGT
1 TATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCAGATGGCTATGTGTCATCGT
20597464 GAGTATATGAATCCTTTACGGAT
66 GAGTATATGAATCCTTTACGGAT
* *
20597487 TATGTGTCGTCGTGAGTATATGAATCCTTTACGGATTATGAGGTCAGATGGCTGTGTGTCATCGT
1 TATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCAGATGGCTATGTGTCATCGT
*
20597552 GAGTATATGAATCCTTTATGGAT
66 GAGTATATGAATCCTTTACGGAT
20597575 TATG
1 TATG
20597579 AGGTCCGGTG
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 86 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (88 bp):
TATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCAGATGGCTATGTGTCATCGT
GAGTATATGAATCCTTTACGGAT
Found at i:20597552 original size:52 final size:52
Alignment explanation
Indices: 20597489--20597664 Score: 307
Period size: 52 Copynumber: 3.4 Consensus size: 52
20597479 TTACGGATTA
* * *
20597489 TGTGTCGTCGTGAGTATATGAATCCTTTACGGATTATGAGGTCAGATGGCTG
1 TGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGGTGGCTG
*
20597541 TGTGTCATCGTGAGTATATGAATCCTTTATGGATTATGAGGTCCGGTGGCTG
1 TGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGGTGGCTG
*
20597593 TGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGGTGGCTA
1 TGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGGTGGCTG
20597645 TGTGTCATCGTGAGTATATG
1 TGTGTCATCGTGAGTATATG
20597665 GATGAAATGA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 118 1.00
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (52 bp):
TGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAGGTCCGGTGGCTG
Found at i:20599314 original size:32 final size:32
Alignment explanation
Indices: 20599277--20599340 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
20599267 ACAATGCGCG
20599277 TTTATTAAGGGGAGACATATTTTTTATGGAAT
1 TTTATTAAGGGGAGACATATTTTTTATGGAAT
20599309 TTTATTAAGGGGAGACATATTTTTTATGGAAT
1 TTTATTAAGGGGAGACATATTTTTTATGGAAT
20599341 ACTAATAGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (32 bp):
TTTATTAAGGGGAGACATATTTTTTATGGAAT
Found at i:20602216 original size:12 final size:12
Alignment explanation
Indices: 20602199--20602223 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20602189 TTCTTGAATA
20602199 AAATATAATATC
1 AAATATAATATC
20602211 AAATATAATATC
1 AAATATAATATC
20602223 A
1 A
20602224 TGCAATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATATAATATC
Found at i:20602795 original size:31 final size:31
Alignment explanation
Indices: 20602759--20602897 Score: 103
Period size: 31 Copynumber: 4.5 Consensus size: 31
20602749 TTAATATAAT
20602759 ATTTGGTACTTAAACTTGACAATTTTTTTTA
1 ATTTGGTACTTAAACTTGACAATTTTTTTTA
* *
20602790 TTTTGGTACCTAAA-TT-----TTTTTTTGATCAA
1 ATTTGGTACTTAAACTTGACAATTTTTTT--T--A
* * * * **
20602819 ATTTGGTACTCAAATTTGATACTTTTTCCTA
1 ATTTGGTACTTAAACTTGACAATTTTTTTTA
*
20602850 ATTTGGTA-TCTAAACTTGGCAATTTTTTTTA
1 ATTTGGTACT-TAAACTTGACAATTTTTTTTA
20602881 ATTTGGTACTTAAACTT
1 ATTTGGTACTTAAACTT
20602898 TTTGGGGCCC
Statistics
Matches: 82, Mismatches: 14, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
25 7 0.09
27 1 0.01
29 12 0.15
30 5 0.06
31 50 0.61
32 1 0.01
33 1 0.01
35 5 0.06
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.51
Consensus pattern (31 bp):
ATTTGGTACTTAAACTTGACAATTTTTTTTA
Found at i:20603218 original size:31 final size:30
Alignment explanation
Indices: 20603182--20603291 Score: 100
Period size: 31 Copynumber: 3.6 Consensus size: 30
20603172 GGTCCAAAAA
*
20603182 AAGTTTAGGTACCAAATTAGGAAAAAATGTC
1 AAGTTTAGATACCAAATTAGGAAAAAAT-TC
* *
20603213 AAGTTTAGATACCAAATTGAGTCAAAAAA-TA
1 AAGTTTAGATACCAAATT-AG-GAAAAAATTC
* *
20603244 AAATTTAGGTACCAAATTA-GAAAAAGATATC
1 AAGTTTAGATACCAAATTAGGAAAAA-AT-TC
20603275 ATA-TTTAGATACCAAAT
1 A-AGTTTAGATACCAAAT
20603292 CTTATATTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
28 5 0.08
29 1 0.02
30 1 0.02
31 49 0.75
32 3 0.05
33 6 0.09
ACGTcount: A:0.49, C:0.10, G:0.14, T:0.27
Consensus pattern (30 bp):
AAGTTTAGATACCAAATTAGGAAAAAATTC
Found at i:20603229 original size:60 final size:61
Alignment explanation
Indices: 20603095--20603291 Score: 213
Period size: 60 Copynumber: 3.2 Consensus size: 61
20603085 ATTTAATGAA
* * * * * * *
20603095 TTTAGGTACCAAATTGAATCTAAAAAAAAGTTTAGGTGCCAAAGTAGGAAAATATGCCAAG
1 TTTAGATACCAAATTGAGTCAAAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
* * * *
20603156 TTCA-AGTATCAAATTGGGTC-CAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
1 TTTAGA-TACCAAATTGAGTCAAAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
* *
20603216 TTTAGATACCAAATTGAGTCAAAAAATAAAATTTAGGTACCAAATTA-GAAAAAGATATCATA-
1 TTTAGATACCAAATTGAGTCAAAAAA-AAAGTTTAGGTACCAAATTAGGAAAAA-ATGTCA-AG
20603278 TTTAGATACCAAAT
1 TTTAGATACCAAAT
20603292 CTTATATTAA
Statistics
Matches: 114, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
60 50 0.44
61 25 0.22
62 38 0.33
63 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.16, T:0.26
Consensus pattern (61 bp):
TTTAGATACCAAATTGAGTCAAAAAAAAAGTTTAGGTACCAAATTAGGAAAAAATGTCAAG
Found at i:20604212 original size:20 final size:20
Alignment explanation
Indices: 20604175--20604213 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
20604165 GATTTGATGA
* * *
20604175 AATTAATTGTTAATATTATT
1 AATTAATTATGAAAATTATT
20604195 AATTAATTATGAAAATTAT
1 AATTAATTATGAAAATTAT
20604214 ATTTTTTTTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
AATTAATTATGAAAATTATT
Found at i:20604908 original size:2 final size:2
Alignment explanation
Indices: 20604901--20604950 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
20604891 AGATACCTGT
20604901 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
20604943 AG AG AG AG
1 AG AG AG AG
20604951 TCAATTTTGG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20614862 original size:35 final size:37
Alignment explanation
Indices: 20614818--20614886 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 37
20614808 TGGTAACAAG
*
20614818 CATGAACTTTAG-GTTAATAAGGAGTAAAATGAGCAT
1 CATGAACTTTAGAGTCAATAAGGAGTAAAATGAGCAT
* *
20614854 CATG-ACTTTTGAGTCAATAGGGAGTAAAATGAG
1 CATGAACTTTAGAGTCAATAAGGAGTAAAATGAG
20614887 TAACGATCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 6 0.21
36 23 0.79
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.28
Consensus pattern (37 bp):
CATGAACTTTAGAGTCAATAAGGAGTAAAATGAGCAT
Found at i:20621456 original size:49 final size:49
Alignment explanation
Indices: 20621400--20621497 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
20621390 GACTATGGAG
20621400 AAAGTAAAATGAAGAAGATAACCTCTTTTTTTTCCTTTTTAATTTTTAA
1 AAAGTAAAATGAAGAAGATAACCTCTTTTTTTTCCTTTTTAATTTTTAA
20621449 AAAGTAAAATGAAGAAGATAACCTCTTTTTTTTCCTTTTTAATTTTTAA
1 AAAGTAAAATGAAGAAGATAACCTCTTTTTTTTCCTTTTTAATTTTTAA
20621498 TTCTAACATT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (49 bp):
AAAGTAAAATGAAGAAGATAACCTCTTTTTTTTCCTTTTTAATTTTTAA
Found at i:20622355 original size:22 final size:20
Alignment explanation
Indices: 20622326--20622365 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
20622316 CACTTATACT
20622326 AATTTTTAATTCAATAATTAA
1 AATTTTTAATTCAA-AATTAA
20622347 AATTCTTTAATTCAAAATT
1 AATT-TTTAATTCAAAATT
20622366 CCATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTTTTAATTCAAAATTAA
Found at i:20627297 original size:22 final size:20
Alignment explanation
Indices: 20627268--20627307 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
20627258 CACTTATACT
20627268 AATTTTTAATTCAATAATTAA
1 AATTTTTAATTCAA-AATTAA
20627289 AATTCTTTAATTCAAAATT
1 AATT-TTTAATTCAAAATT
20627308 CCATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTTTTAATTCAAAATTAA
Found at i:20627962 original size:14 final size:13
Alignment explanation
Indices: 20627953--20627982 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
20627943 ATAAAAGAAT
20627953 AAAAATAAAAATA
1 AAAAATAAAAATA
20627966 AAAAGATAAAAATA
1 AAAA-ATAAAAATA
20627980 AAA
1 AAA
20627983 TTGAGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:20632554 original size:43 final size:43
Alignment explanation
Indices: 20632517--20632736 Score: 167
Period size: 43 Copynumber: 5.2 Consensus size: 43
20632507 TTATCCGGCA
* *
20632517 ATGCACTTTGTGTGCCAGTATAGTTGCTTCGGTTTATCCGATG
1 ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCGATG
* ** * *
20632560 ATGCACTGTGTATGCCAACATAGATGCTTCGATTTATCCGATG
1 ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCGATG
* * * * *
20632603 ATGTACTATGTCTGTCGGTATAGTTGCTTCGGTTTATTCGATG
1 ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCGATG
* * * * * * **
20632646 GTGCTCTATGTGTGCCAATATATTTTCTTTAGTTTAT-CGAATG
1 ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCG-ATG
* ** * * * *
20632689 ATGCATTACATGTGCCAGTATA-TTTCCT-GGATTATCCGATG
1 ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCGATG
20632730 ATGCACT
1 ATGCACT
20632737 GAGTGTGACA
Statistics
Matches: 138, Mismatches: 37, Indels: 6
0.76 0.20 0.03
Matches are distributed among these distances:
41 14 0.10
42 9 0.07
43 115 0.83
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (43 bp):
ATGCACTATGTATGCCAGTATAGTTGCTTCGGTTTATCCGATG
Found at i:20632710 original size:86 final size:86
Alignment explanation
Indices: 20632527--20632736 Score: 194
Period size: 86 Copynumber: 2.5 Consensus size: 86
20632517 ATGCACTTTG
* *
20632527 TGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCACTGTGTATGCCAACATAGATGCTTCGA
1 TGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCACTATGTATGCCAACATAGATGCTTAGA
* **
20632592 TTTATCCGATGATGTACTATG
66 TTTATCCGATGATGCACTACA
* * * * * * * * ** *
20632613 TCTGTCGGTATAGTTGCTTCGGTTTATTCGATGGTGCTCTATGTGTGCCAATATATTTTCTTTAG
1 TGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCACTATGTATGCCAACATAGATGC-TTAG
*
20632678 -TTTAT-CGAATGATGCATTACA
65 ATTTATCCG-ATGATGCACTACA
* * *
20632699 TGTGCCAGTATA-TTTCCT-GGATTATCCGATGATGCACT
1 TGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCACT
20632737 GAGTGTGACA
Statistics
Matches: 96, Mismatches: 26, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
84 16 0.17
85 6 0.06
86 71 0.74
87 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.40
Consensus pattern (86 bp):
TGTGCCAGTATAGTTGCTTCGGTTTATCCGATGATGCACTATGTATGCCAACATAGATGCTTAGA
TTTATCCGATGATGCACTACA
Found at i:20635136 original size:53 final size:53
Alignment explanation
Indices: 20635056--20635188 Score: 203
Period size: 53 Copynumber: 2.5 Consensus size: 53
20635046 TGAAAAAGGT
** *
20635056 CCGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTATGGATTATGTGGC
1 CCGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGAGGC
* * *
20635109 CCGATGACTACGTGTCATTGTGAGTATATGAAATCCTTTACAGATTATGAGGT
1 CCGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGAGGC
*
20635162 CCGATGACTATGTGTCATCGTGAGTAT
1 CCGATGACTAAGTGTCATCGTGAGTAT
20635189 TAAATGAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 72 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (53 bp):
CCGATGACTAAGTGTCATCGTGAGTATATGAAATCCTTTACAGATTATGAGGC
Found at i:20636427 original size:6 final size:6
Alignment explanation
Indices: 20636418--20636442 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
20636408 AAATTTTCTT
20636418 TTTTTC TTTTTC TTTTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC T
20636443 ACTTTGGGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:20639434 original size:14 final size:14
Alignment explanation
Indices: 20639417--20639443 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
20639407 TTGAGTTTTG
20639417 GGGCTCGAGGCTCA
1 GGGCTCGAGGCTCA
20639431 GGGCTCGAGGCTC
1 GGGCTCGAGGCTC
20639444 GGGGTCTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.30, G:0.44, T:0.15
Consensus pattern (14 bp):
GGGCTCGAGGCTCA
Found at i:20640461 original size:11 final size:11
Alignment explanation
Indices: 20640436--20640521 Score: 50
Period size: 11 Copynumber: 7.7 Consensus size: 11
20640426 ATTTTGGTTC
*
20640436 TTTTTATTTGAA
1 TTTTTA-TTGTA
20640448 TTTTTATTGTA
1 TTTTTATTGTA
* *
20640459 TTTTTGTCAGTA
1 TTTTTAT-TGTA
* *
20640471 TTTTTGGTTCT-
1 TTTTT-ATTGTA
*
20640482 TTTTTATTGAA
1 TTTTTATTGTA
*
20640493 TTTTTATTGAA
1 TTTTTATTGTA
*
20640504 TTTTTGTT-TA
1 TTTTTATTGTA
*
20640514 TTATTATT
1 TTTTTATT
20640522 TTGATTTTTC
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
10 9 0.15
11 33 0.56
12 15 0.25
13 2 0.03
ACGTcount: A:0.19, C:0.02, G:0.10, T:0.69
Consensus pattern (11 bp):
TTTTTATTGTA
Found at i:20640496 original size:10 final size:11
Alignment explanation
Indices: 20640482--20640508 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
20640472 TTTTGGTTCT
20640482 TTTTTATTGAA
1 TTTTTATTGAA
20640493 TTTTTATTGAA
1 TTTTTATTGAA
20640504 TTTTT
1 TTTTT
20640509 GTTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (11 bp):
TTTTTATTGAA
Found at i:20642216 original size:67 final size:66
Alignment explanation
Indices: 20642112--20642238 Score: 218
Period size: 67 Copynumber: 1.9 Consensus size: 66
20642102 TAAAAAGGAA
20642112 AAAAAATACTTTCACAAAAAAGTATTAAAAAACATGTAGAAATAAACAACAAAATGACAAAAAAA
1 AAAAAATACTTTCACAAAAAAGTATTAAAAAACATGTAGAAATAAACAACAAAATGACAAAAAAA
20642177 G
66 G
* * *
20642178 AAAAAATATTTTTACAAAAAAGTATTAAAAAAATATGTAGAAATAAACAACAAAATGACAA
1 AAAAAATACTTTCACAAAAAAGTATT-AAAAAACATGTAGAAATAAACAACAAAATGACAA
20642239 CTTTGATTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
66 24 0.42
67 33 0.58
ACGTcount: A:0.65, C:0.09, G:0.07, T:0.20
Consensus pattern (66 bp):
AAAAAATACTTTCACAAAAAAGTATTAAAAAACATGTAGAAATAAACAACAAAATGACAAAAAAA
G
Found at i:20643112 original size:7 final size:7
Alignment explanation
Indices: 20643100--20643274 Score: 54
Period size: 7 Copynumber: 25.1 Consensus size: 7
20643090 TGAGTAGAGC
20643100 TTGGGGT
1 TTGGGGT
*
20643107 TTGGGGC
1 TTGGGGT
20643114 TTGAGGG-
1 TTG-GGGT
20643121 TTGGGGT
1 TTGGGGT
** *
20643128 TTAAGGC
1 TTGGGGT
*
20643135 TTAGGGT
1 TTGGGGT
*
20643142 TTGGGAT
1 TTGGGGT
*
20643149 TTTGGGT
1 TTGGGGT
*
20643156 TTGAGGCT
1 TTG-GGGT
* *
20643164 TAGGGCT
1 TTGGGGT
20643171 TT-GGGT
1 TTGGGGT
* *
20643177 TTAGGTT
1 TTGGGGT
20643184 TTGGGGT
1 TTGGGGT
*
20643191 TTGAGGCT
1 TTG-GGGT
*
20643199 TT--GAT
1 TTGGGGT
*
20643204 TTTGGGT
1 TTGGGGT
20643211 TTGGGGT
1 TTGGGGT
***
20643218 TTCAAGT
1 TTGGGGT
**
20643225 TT-AAGT
1 TTGGGGT
20643231 TTGGGGT
1 TTGGGGT
**
20643238 TAAGGGT
1 TTGGGGT
*
20643245 TTGGGTT
1 TTGGGGT
*
20643252 TTTGGGT
1 TTGGGGT
20643259 TTAGGGGT
1 TT-GGGGT
*
20643267 TAGGGGT
1 TTGGGGT
20643274 T
1 T
20643275 GAGGTTTAAG
Statistics
Matches: 123, Mismatches: 36, Indels: 18
0.69 0.20 0.10
Matches are distributed among these distances:
5 4 0.03
6 14 0.11
7 87 0.71
8 18 0.15
ACGTcount: A:0.10, C:0.03, G:0.43, T:0.43
Consensus pattern (7 bp):
TTGGGGT
Found at i:20643126 original size:21 final size:21
Alignment explanation
Indices: 20643100--20643175 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
20643090 TGAGTAGAGC
20643100 TTGGGGTTTGGGGCTTGAGGG
1 TTGGGGTTTGGGGCTTGAGGG
**
20643121 TTGGGGTTTAAGGCTT-AGGG
1 TTGGGGTTTGGGGCTTGAGGG
* * * *
20643141 TTTGGGATTTTGGGTTTGAGGC
1 -TTGGGGTTTGGGGCTTGAGGG
*
20643163 TTAGGGCTTTGGG
1 TT-GGGGTTTGGG
20643176 TTTAGGTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
20 4 0.09
21 28 0.65
22 11 0.26
ACGTcount: A:0.09, C:0.05, G:0.47, T:0.38
Consensus pattern (21 bp):
TTGGGGTTTGGGGCTTGAGGG
Found at i:20643162 original size:28 final size:28
Alignment explanation
Indices: 20643124--20643213 Score: 87
Period size: 28 Copynumber: 3.2 Consensus size: 28
20643114 TTGAGGGTTG
*
20643124 GGGTTTAAGGCTTAGGGTTTGGGATTTT
1 GGGTTTGAGGCTTAGGGTTTGGGATTTT
*
20643152 GGGTTTGAGGCTTAGGGCTTTGGG-TTTA
1 GGGTTTGAGGCTTAGGG-TTTGGGATTTT
* * * *
20643180 GGTTTTGGGGTTTGAGGCTTT--GATTTT
1 GGGTTTGAGGCTT-AGGGTTTGGGATTTT
20643207 GGGTTTG
1 GGGTTTG
20643214 GGGTTTCAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
26 1 0.02
27 9 0.18
28 32 0.63
29 9 0.18
ACGTcount: A:0.10, C:0.04, G:0.41, T:0.44
Consensus pattern (28 bp):
GGGTTTGAGGCTTAGGGTTTGGGATTTT
Found at i:20643171 original size:35 final size:35
Alignment explanation
Indices: 20643132--20643199 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
20643122 TGGGGTTTAA
*
20643132 GGCTTAGGGTTTGGGATTTT-GGGTTTGAGGCTTAG
1 GGCTTAGGGTTTAGG-TTTTGGGGTTTGAGGCTTAG
*
20643167 GGCTTTGGGTTTAGGTTTTGGGGTTTGAGGCTT
1 GGCTTAGGGTTTAGGTTTTGGGGTTTGAGGCTT
20643200 TGATTTTGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 4 0.13
35 26 0.87
ACGTcount: A:0.09, C:0.06, G:0.43, T:0.43
Consensus pattern (35 bp):
GGCTTAGGGTTTAGGTTTTGGGGTTTGAGGCTTAG
Found at i:20643219 original size:35 final size:35
Alignment explanation
Indices: 20643138--20643219 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
20643128 TTAAGGCTTA
* *
20643138 GGGTTTGGGATTTTGGGTTTGAGGCTTAGGGCTTT
1 GGGTTTGGGGTTTTGGGTTTGAGGCTTAGGACTTT
* * *
20643173 GGGTTT-AGGTTTTGGGGTTTGAGGCTT-TGATTTT
1 GGGTTTGGGGTTTT-GGGTTTGAGGCTTAGGACTTT
20643207 GGGTTTGGGGTTT
1 GGGTTTGGGGTTT
20643220 CAAGTTTAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
34 15 0.38
35 24 0.62
ACGTcount: A:0.07, C:0.04, G:0.43, T:0.46
Consensus pattern (35 bp):
GGGTTTGGGGTTTTGGGTTTGAGGCTTAGGACTTT
Found at i:20643308 original size:28 final size:29
Alignment explanation
Indices: 20643235--20643309 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
20643225 TTAAGTTTGG
* ** *
20643235 GGTTAAGGGTTTGGGTTTTTGGGTTTAGG
1 GGTTAGGGGTTTGGGTTTAAGGGTTTAGA
*
20643264 GGTTAGGGG-TTGAGGTTTAAGGTTTTA-A
1 GGTTAGGGGTTTG-GGTTTAAGGGTTTAGA
*
20643292 GGTTGGGGGTTTGGGTTT
1 GGTTAGGGGTTTGGGTTT
20643310 TGAGTCTCGA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 16 0.42
29 22 0.58
ACGTcount: A:0.12, C:0.00, G:0.45, T:0.43
Consensus pattern (29 bp):
GGTTAGGGGTTTGGGTTTAAGGGTTTAGA
Found at i:20643441 original size:13 final size:13
Alignment explanation
Indices: 20643423--20643447 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20643413 TTGGGCTTAG
20643423 GGTTTATGGTTTA
1 GGTTTATGGTTTA
20643436 GGTTTATGGTTT
1 GGTTTATGGTTT
20643448 CGAGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.32, T:0.56
Consensus pattern (13 bp):
GGTTTATGGTTTA
Found at i:20643467 original size:7 final size:7
Alignment explanation
Indices: 20643446--20643484 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
20643436 GGTTTATGGT
20643446 TTCGAGA
1 TTCGAGA
**
20643453 TTTAAGA
1 TTCGAGA
20643460 TTCGAGA
1 TTCGAGA
20643467 TTCGAGA
1 TTCGAGA
20643474 TTCGAGA
1 TTCGAGA
20643481 TTCG
1 TTCG
20643485 GGTTGGGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (7 bp):
TTCGAGA
Found at i:20643613 original size:14 final size:13
Alignment explanation
Indices: 20643596--20643648 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
20643586 CGGGTCTCAA
20643596 GTTTAGGATTTAGG
1 GTTTAGG-TTTAGG
20643610 GTTTGAGGTTTAGG
1 GTTT-AGGTTTAGG
*
20643624 GTCTTAAGTTTAGG
1 GT-TTAGGTTTAGG
20643638 GTTTGAGGTTT
1 GTTT-AGGTTT
20643649 GAGGTTTGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 2 0.06
14 27 0.79
15 5 0.15
ACGTcount: A:0.17, C:0.02, G:0.36, T:0.45
Consensus pattern (13 bp):
GTTTAGGTTTAGG
Found at i:20643633 original size:35 final size:34
Alignment explanation
Indices: 20643587--20643659 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
20643577 CTCAAGACTC
20643587 GGGTCTCAAGTTTAGGATTT-AGGGTTTGAGGTTT
1 GGGTCTCAAGTTTAGGATTTGA-GGTTTGAGGTTT
* *
20643621 AGGGTCTTAAGTTTAGGGTTTGAGGTTTGAGGTTT
1 -GGGTCTCAAGTTTAGGATTTGAGGTTTGAGGTTT
20643656 GGGT
1 GGGT
20643660 AACCAAATGG
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 4 0.11
35 30 0.86
36 1 0.03
ACGTcount: A:0.16, C:0.04, G:0.38, T:0.41
Consensus pattern (34 bp):
GGGTCTCAAGTTTAGGATTTGAGGTTTGAGGTTT
Found at i:20649290 original size:50 final size:50
Alignment explanation
Indices: 20649229--20649421 Score: 200
Period size: 50 Copynumber: 3.9 Consensus size: 50
20649219 AAATATTTTG
* *
20649229 AATTAAGTATTTGGGTTGTTGTTAATAAATAACTAATT-ATTAAATTAAAT
1 AATTAAATATTTGGATTGTT-TTAATAAATAACTAATTAATTAAATTAAAT
* *
20649279 AATTAAATATTTGGATTGTTTT--T-AATAATTAAAT-ATTAAATTAAATAT
1 AATTAAATATTTGGATTGTTTTAATAAATAACTAATTAATTAAATT-AA-AT
* * * *
20649327 AATTAAATATTTGGATTGTTGTTAAGAATTAACTAGTTAATT-AATTAATT
1 AATTAAATATTTGGATTGTT-TTAATAAATAACTAATTAATTAAATTAAAT
* * * *
20649377 AATTAATTATTTGGATTGTTTTAATAATTAAATATTTAATTAAAT
1 AATTAAATATTTGGATTGTTTTAATAAATAACTAATTAATTAAAT
20649422 GTAATTAGAT
Statistics
Matches: 121, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
46 17 0.14
47 3 0.02
48 22 0.18
49 22 0.18
50 41 0.34
51 2 0.02
52 11 0.09
53 3 0.02
ACGTcount: A:0.42, C:0.01, G:0.09, T:0.47
Consensus pattern (50 bp):
AATTAAATATTTGGATTGTTTTAATAAATAACTAATTAATTAAATTAAAT
Found at i:20649322 original size:12 final size:11
Alignment explanation
Indices: 20649304--20649337 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
20649294 TTGTTTTTAA
20649304 TAATTAAATAT
1 TAATTAAATAT
20649315 TAAATTAAATA-
1 T-AATTAAATAT
20649326 TAATTAAATAT
1 TAATTAAATAT
20649337 T
1 T
20649338 TGGATTGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 9 0.43
11 3 0.14
12 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TAATTAAATAT
Found at i:20649346 original size:98 final size:97
Alignment explanation
Indices: 20649229--20649428 Score: 294
Period size: 98 Copynumber: 2.1 Consensus size: 97
20649219 AAATATTTTG
* * *
20649229 AATTAAGTATTTGGGTTGTTGTTAATAAATAACTAATT-ATTAAATTAAATAATTAAATATTTGG
1 AATTAAATATTTGGATTGTTGTTAAGAAATAACTAATTAATT-AATTAAATAATTAAATATTTGG
20649293 ATTGTTTTTAATAATTAAATATTAAATTAAATAT
65 ATTG-TTTTAATAATTAAATATTAAATTAAATAT
* * * *
20649327 AATTAAATATTTGGATTGTTGTTAAGAATTAACTAGTTAATTAATTAATTAATTAATTATTTGGA
1 AATTAAATATTTGGATTGTTGTTAAGAAATAACTAATTAATTAATTAAATAATTAAATATTTGGA
* *
20649392 TTGTTTTAATAATTAAATATTTAATTAAATGT
66 TTGTTTTAATAATTAAATATTAAATTAAATAT
20649424 AATTA
1 AATTA
20649429 GATAATAAAA
Statistics
Matches: 92, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
97 32 0.35
98 57 0.62
99 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.10, T:0.47
Consensus pattern (97 bp):
AATTAAATATTTGGATTGTTGTTAAGAAATAACTAATTAATTAATTAAATAATTAAATATTTGGA
TTGTTTTAATAATTAAATATTAAATTAAATAT
Found at i:20649527 original size:112 final size:112
Alignment explanation
Indices: 20649363--20649830 Score: 717
Period size: 112 Copynumber: 4.2 Consensus size: 112
20649353 AATTAACTAG
* * * * *
20649363 TTAATTAATTAATTAATTAATTATTTGGATTG-TTTTAATAATTAAATATTTAATTAAATGTAAT
1 TTAATTAATTAAATATTTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAAT
*
20649427 TAGA-TAATAAAATATTTTTAATTAAATATTTGGGTTGTTTTTAATAA
66 TA-ACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
* * * * *
20649474 ATAATTAATTAAATATTTAAACATTTGGATTATTTTTAATTATTAAATATTTAATTAAGTACAAT
1 TTAATTAATTAAATATTTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAAT
20649539 TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
66 TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
* *
20649586 TTAATTAATTAAAAATTTAAATATTTGGATTGTTTTTAATTATTGAATATTTAATTAAATATAAT
1 TTAATTAATTAAATATTTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAAT
20649651 TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
66 TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
* * *
20649698 TTAATTAATGAAATATTTATATATTTGGATTGTTTTTAATTATTAAATATTTAATTATATATAAT
1 TTAATTAATTAAATATTTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAAT
* *
20649763 TAAATAATAAAATATTTTTAATTAAATATTTAGGTTA-TTTTAATAA
66 TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
*
20649809 TTAAATATAATTAAATAATTAA
1 TT-AAT-TAATTAAATATTTAA
20649831 CTAATTAAAT
Statistics
Matches: 325, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
111 38 0.12
112 275 0.85
113 12 0.04
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.50
Consensus pattern (112 bp):
TTAATTAATTAAATATTTAAATATTTGGATTGTTTTTAATTATTAAATATTTAATTAAATATAAT
TAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAA
Found at i:20649766 original size:22 final size:22
Alignment explanation
Indices: 20649739--20649794 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
20649729 GTTTTTAATT
*
20649739 ATTAAATATTTAATTATATATA
1 ATTAAATATTTAAATATATATA
* * * *
20649761 ATTAAATAATAAAATATTTTTA
1 ATTAAATATTTAAATATATATA
20649783 ATTAAATATTTA
1 ATTAAATATTTA
20649795 GGTTATTTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAATATTTAAATATATATA
Found at i:20649826 original size:8 final size:8
Alignment explanation
Indices: 20649804--20649934 Score: 74
Period size: 8 Copynumber: 16.4 Consensus size: 8
20649794 AGGTTATTTT
20649804 AATAATTAA
1 AATAATT-A
20649813 ATATAATTA
1 A-ATAATTA
20649822 AATAATTA
1 AATAATTA
*
20649830 ACTAATTA
1 AATAATTA
*
20649838 AATATTTGA
1 AATAATT-A
* ** *
20649847 ATTGTTTT
1 AATAATTA
20649855 AATAATTA
1 AATAATTA
*
20649863 AATTATTA
1 AATAATTA
*
20649871 AATATTTA
1 AATAATTA
*
20649879 AATATTTA
1 AATAATTA
20649887 AAT-ATT-
1 AATAATTA
20649893 --TAATTA
1 AATAATTA
*
20649899 AAT-TTTA
1 AATAATTA
*
20649906 TTAGTAATTA
1 --AATAATTA
*
20649916 AATATTTA
1 AATAATTA
20649924 AATAATTA
1 AATAATTA
20649932 AAT
1 AAT
20649935 TTGTTAATTT
Statistics
Matches: 93, Mismatches: 20, Indels: 19
0.70 0.15 0.14
Matches are distributed among these distances:
4 1 0.01
5 3 0.03
7 5 0.05
8 64 0.69
9 11 0.12
10 9 0.10
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (8 bp):
AATAATTA
Found at i:20649897 original size:224 final size:225
Alignment explanation
Indices: 20649303--20649901 Score: 711
Period size: 224 Copynumber: 2.6 Consensus size: 225
20649293 ATTGTTTTTA
* * ** * * * * * *
20649303 ATAATTAAATATTAAATTAAATATAATTAAATATTTGGATTGTTGTTAAGAATTAACTAGTTAAT
1 ATAATTAAATAATAAAATATTTTTAATTAAATATTTGG-TTATT-TTAATAATTAATTAATTAAA
* * *
20649368 TAATTAATTAATTAATTATTTGGATTGTTTTAATAATTAAATATTTAATTAAATGTAATTAGATA
64 TAATTAA-TAATTAAATATTTGGATTGTTTTAATAATTAAATATTTAATTAAA--TATTTAAATA
* *
20649433 ATAAAATATTTTTAATTAAATATTTGGGTTGTTTTTAATAAATAATTAATTAAATATTTAAACAT
126 ATAAAATA-TTTTAATTAAATATTTGGGTTATTTTTAATAAATAATTAATGAAATATTTAAACAT
20649498 TTGGATTATTTTTAATTATTAAATATTTAATTAAGT
190 TTGGATTATTTTTAATTATTAAATATTTAATTAAGT
* *
20649534 ACAATTAACTAATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAATTAATTAATT--A
1 ATAATTAAATAATAAAATATTTTTAATTAAATATTT-GGTTA-TTTTAATAATTAATTAATTAAA
* * *
20649597 -AA--AAT--TTAAATATTTGGATTGTTTTTAATTATTGAATATTTAATTAAATATAATTAACTA
64 TAATTAATAATTAAATATTTGGATTG-TTTTAATAATTAAATATTTAATTAAATAT--TTAAATA
* * *
20649657 ATAAAATATTTTTAATTAAATATTTGGGTTATTTTTAATAATTAATTAATGAAATATTTATATAT
126 ATAAAATA-TTTTAATTAAATATTTGGGTTATTTTTAATAAATAATTAATGAAATATTTAAACAT
*
20649722 TTGGATTGTTTTTAATTATTAAATATTTAATTATA-T
190 TTGGATTATTTTTAATTATTAAATATTTAATTA-AGT
20649758 ATAATTAAATAATAAAATATTTTTAATTAAATATTTAGGTTATTTTAATAATTAAATATAATTAA
1 ATAATTAAATAATAAAATATTTTTAATTAAATATTT-GGTTATTTTAATAATT-AAT-TAATTAA
* *
20649823 ATAATTAACTAATTAAATATTTGAATTGTTTTAATAATT-AA-A-TT-ATTAAATATTTAAATAT
63 ATAATTAA-TAATTAAATATTTGGATTGTTTTAATAATTAAATATTTAATTAAATATTTAAATAA
*
20649884 TTAAATA-TTTAATTAAAT
127 TAAAATATTTTAATTAAAT
20649902 TTTATTAGTA
Statistics
Matches: 320, Mismatches: 32, Indels: 39
0.82 0.08 0.10
Matches are distributed among these distances:
222 2 0.01
223 26 0.08
224 175 0.55
225 7 0.02
226 14 0.04
227 1 0.00
228 13 0.04
229 2 0.01
230 3 0.01
231 48 0.15
232 14 0.04
233 15 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (225 bp):
ATAATTAAATAATAAAATATTTTTAATTAAATATTTGGTTATTTTAATAATTAATTAATTAAATA
ATTAATAATTAAATATTTGGATTGTTTTAATAATTAAATATTTAATTAAATATTTAAATAATAAA
ATATTTTAATTAAATATTTGGGTTATTTTTAATAAATAATTAATGAAATATTTAAACATTTGGAT
TATTTTTAATTATTAAATATTTAATTAAGT
Found at i:20652525 original size:19 final size:18
Alignment explanation
Indices: 20652500--20652549 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
20652490 GCACTTTCCC
20652500 ATATTTTAATTTTTTTAAT
1 ATATTTTAATTTTTTT-AT
* *
20652519 TTATTTTCAAATTTTTTAT
1 ATATTTT-AATTTTTTTAT
*
20652538 ATATTTAAATTT
1 ATATTTTAATTT
20652550 AATCCTTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
18 4 0.16
19 13 0.52
20 8 0.32
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
ATATTTTAATTTTTTTAT
Found at i:20653662 original size:41 final size:41
Alignment explanation
Indices: 20653592--20653868 Score: 238
Period size: 41 Copynumber: 6.6 Consensus size: 41
20653582 AAAGTCGAAG
* * *
20653592 CGCTTGTGGAAAAGCGTC-GCTAATTCCCTGACTTTTAGCGA
1 CGCTTCTGGAAAAGCG-CAGCTAATGCCCTGACCTTTAGCGA
**
20653633 CATTTCTAGG-AAAGCGCAGCTAATGCCCTGACCTTTAGCGA
1 CGCTTCT-GGAAAAGCGCAGCTAATGCCCTGACCTTTAGCGA
* *
20653674 CGCTTGTGGAAAAGCGCAGCTAATGCCTTGACCTTTAGC-A
1 CGCTTCTGGAAAAGCGCAGCTAATGCCCTGACCTTTAGCGA
* * * *
20653714 GCGCTTGTGGAAAAGCGCTGCTAATGCCCTGACTTTTAGCGG
1 -CGCTTCTGGAAAAGCGCAGCTAATGCCCTGACCTTTAGCGA
* * *
20653756 CGTTTCTAGG-AAAGCACCGCTAATGACCTGACCTGACCTTTAGCGA
1 CGCTTCT-GGAAAAGCGCAGCTAATG--C---CCTGACCTTTAGCGA
* * * * * *
20653802 CGCTTGTGAAAAAGCGCCGTTAATGCCCTAACCTTTAGCGG
1 CGCTTCTGGAAAAGCGCAGCTAATGCCCTGACCTTTAGCGA
* * *
20653843 CGCTTATGGAAAAGCGCCGTTAATGC
1 CGCTTCTGGAAAAGCGCAGCTAATGC
20653869 TTTACCTTTT
Statistics
Matches: 196, Mismatches: 28, Indels: 24
0.79 0.11 0.10
Matches are distributed among these distances:
40 4 0.02
41 154 0.79
42 4 0.02
43 1 0.01
44 1 0.01
45 1 0.01
46 31 0.16
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (41 bp):
CGCTTCTGGAAAAGCGCAGCTAATGCCCTGACCTTTAGCGA
Found at i:20653729 original size:82 final size:82
Alignment explanation
Indices: 20653591--20653877 Score: 285
Period size: 82 Copynumber: 3.5 Consensus size: 82
20653581 CAAAGTCGAA
* * * * ** *
20653591 GCGCTTGTGGAAAAGCGTCGCTAATTCCCTGACTTTTAGCGACATTTCTAGG-AAAGCGCAGCTA
1 GCGCTTGTGGAAAAGCGCCGCTAATGCCTTGACCTTTAGCGACGCTTGT-GGAAAAGCGCAGCTA
20653655 ATGCCCTGACCTTTAGCG
65 ATGCCCTGACCTTTAGCG
* * *
20653673 ACGCTTGTGGAAAAGCGCAGCTAATGCCTTGACCTTTAGC-AGCGCTTGTGGAAAAGCGCTGCTA
1 GCGCTTGTGGAAAAGCGCCGCTAATGCCTTGACCTTTAGCGA-CGCTTGTGGAAAAGCGCAGCTA
*
20653737 ATGCCCTGACTTTTAGCG
65 ATGCCCTGACCTTTAGCG
* * * *
20653755 GCGTTTCTAGG-AAAGCACCGCTAATGACCTGACCTGACCTTTAGCGACGCTTGTGAAAAAGCGC
1 GCGCTTGT-GGAAAAGCGCCGCTAATG-CCT----TGACCTTTAGCGACGCTTGTGGAAAAGCGC
* * *
20653819 CGTTAATGCCCTAACCTTTAGCG
60 AGCTAATGCCCTGACCTTTAGCG
* * *
20653842 GCGCTTATGGAAAAGCGCCGTTAATG-CTTTACCTTT
1 GCGCTTGTGGAAAAGCGCCGCTAATGCCTTGACCTTT
20653878 TATGGCGTTT
Statistics
Matches: 169, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
81 10 0.06
82 84 0.50
83 5 0.03
85 2 0.01
86 2 0.01
87 65 0.38
88 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (82 bp):
GCGCTTGTGGAAAAGCGCCGCTAATGCCTTGACCTTTAGCGACGCTTGTGGAAAAGCGCAGCTAA
TGCCCTGACCTTTAGCG
Found at i:20653857 original size:87 final size:82
Alignment explanation
Indices: 20653643--20653877 Score: 260
Period size: 87 Copynumber: 2.8 Consensus size: 82
20653633 CATTTCTAGG
* * *
20653643 AAAGCGCAGCTAATGCCCTGACCTTTAGCGACGCTTGTGGAAAAGCGCAGCTAATGCCTTGACCT
1 AAAGCGCAGCTAATGCCCTGACCTTTAGCGGCGCTTATGGAAAAGCGCCGCTAATGCCTTGACCT
*
20653708 TTAGCAGCGCTTGTGGA
66 TTAGCAGCGCTTGTGAA
* * * * *
20653725 AAAGCGCTGCTAATGCCCTGACTTTTAGCGGCGTTTCTAGG-AAAGCACCGCTAATGACCTGACC
1 AAAGCGCAGCTAATGCCCTGACCTTTAGCGGCGCTTAT-GGAAAAGCGCCGCTAATG-CCT----
20653789 TGACCTTTAGC-GACGCTTGTGAA
60 TGACCTTTAGCAG-CGCTTGTGAA
* * * * *
20653812 AAAGCGCCGTTAATGCCCTAACCTTTAGCGGCGCTTATGGAAAAGCGCCGTTAATG-CTTTACCT
1 AAAGCGCAGCTAATGCCCTGACCTTTAGCGGCGCTTATGGAAAAGCGCCGCTAATGCCTTGACCT
20653876 TT
66 TT
20653878 TATGGCGTTT
Statistics
Matches: 128, Mismatches: 17, Indels: 17
0.79 0.10 0.10
Matches are distributed among these distances:
81 7 0.05
82 46 0.36
83 5 0.04
85 2 0.02
86 3 0.02
87 65 0.51
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (82 bp):
AAAGCGCAGCTAATGCCCTGACCTTTAGCGGCGCTTATGGAAAAGCGCCGCTAATGCCTTGACCT
TTAGCAGCGCTTGTGAA
Found at i:20653879 original size:128 final size:123
Alignment explanation
Indices: 20653590--20653868 Score: 369
Period size: 128 Copynumber: 2.2 Consensus size: 123
20653580 TCAAAGTCGA
* * * * * *
20653590 AGCGCTTGTGGAAAAGCGTCGCTAATTCCCTGACTTTTAGCGACATTTCTAGGAAAGCGCAGCTA
1 AGCGCTTATGGAAAAGCGCCGCTAATGCCCTGACTTTTAGCGGCGTTTCTAGGAAAGCACAGCTA
* * *
20653655 ATGCCCTGACCTTTAGCGACGCTTGTGGAAAAGCGCAGCTAATGCCTTGACCTTTAGC
66 ATGCCCTGACCTTTAGCGACGCTTGTGAAAAAGCGCAGCTAATGCCCTAACCTTTAGC
* * *
20653713 AGCGCTTGTGGAAAAGCGCTGCTAATGCCCTGACTTTTAGCGGCGTTTCTAGGAAAGCACCGCTA
1 AGCGCTTATGGAAAAGCGCCGCTAATGCCCTGACTTTTAGCGGCGTTTCTAGGAAAGCACAGCTA
* *
20653778 ATGACCTGACCTGACCTTTAGCGACGCTTGTGAAAAAGCGCCGTTAATGCCCTAACCTTTAGC
66 ATG--C---CCTGACCTTTAGCGACGCTTGTGAAAAAGCGCAGCTAATGCCCTAACCTTTAGC
* *
20653841 GGCGCTTATGGAAAAGCGCCGTTAATGC
1 AGCGCTTATGGAAAAGCGCCGCTAATGC
20653869 TTTACCTTTT
Statistics
Matches: 135, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
123 61 0.45
125 1 0.01
128 73 0.54
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (123 bp):
AGCGCTTATGGAAAAGCGCCGCTAATGCCCTGACTTTTAGCGGCGTTTCTAGGAAAGCACAGCTA
ATGCCCTGACCTTTAGCGACGCTTGTGAAAAAGCGCAGCTAATGCCCTAACCTTTAGC
Found at i:20658153 original size:118 final size:116
Alignment explanation
Indices: 20657943--20658282 Score: 344
Period size: 118 Copynumber: 2.9 Consensus size: 116
20657933 TTTTATTTCA
* * * * *
20657943 GACGTTTCGATGAGGCACCGAGTGCTAAATGGTTGCTTCACTATGTCTCGATGAGTGTTGGGCAT
1 GACGTTTCGATGAGGCACCG-GAGCCAAATGGTTACTTCACTATGTGTCGATGAGTGTTGGGCAG
* * * *
20658008 AATTTTTACTTTGGTTATATCAATGAGCGCTAGGCGTAAGA-TAATTACTTCG
65 AATTTTTACTTCGGTTATACCGATGAGCGCTAGGCGTAA-ACTAATTACTTAG
* * * *
20658060 GATGTTTCAATGAGGCACCAGGAGCCAAATGATTACTTCAACTATGTGTCGATGAGTGATGGG-A
1 GACGTTTCGATGAGGCACC-GGAGCCAAATGGTTACTTC-ACTATGTGTCGATGAGTGTTGGGCA
* * *
20658124 GCAATTTTTACTTCAGTTATACCGATGAGCGCT-GAGCGCAAACTGATTACTTAG
64 G-AATTTTTACTTCGGTTATACCGATGAGCGCTAG-GCGTAAACTAATTACTTAG
* * * * ** * *
20658178 GACATTTCGATGAAGCACCGAATACCAAATGGTTACTTCGACTACATGTCAATGTGTGTTGGGCA
1 GACGTTTCGATGAGGCACCGGA-GCCAAATGGTTACTTC-ACTATGTGTCGATGAGTGTTGGGCA
** *
20658243 GAGCTTCTACTTCGGTTATACCGATGAGCGCTAGGCGTAA
64 GAATTTTTACTTCGGTTATACCGATGAGCGCTAGGCGTAA
20658283 TCTATTTTTT
Statistics
Matches: 181, Mismatches: 34, Indels: 15
0.79 0.15 0.07
Matches are distributed among these distances:
117 36 0.20
118 142 0.78
119 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (116 bp):
GACGTTTCGATGAGGCACCGGAGCCAAATGGTTACTTCACTATGTGTCGATGAGTGTTGGGCAGA
ATTTTTACTTCGGTTATACCGATGAGCGCTAGGCGTAAACTAATTACTTAG
Found at i:20665578 original size:10 final size:10
Alignment explanation
Indices: 20665565--20665603 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
20665555 AGGTTCGAAA
20665565 AGAAAAAAAG
1 AGAAAAAAAG
20665575 AGAAAAAAA-
1 AGAAAAAAAG
*
20665584 TGAAAAAAAG
1 AGAAAAAAAG
20665594 AAGAAAAAAA
1 -AGAAAAAAA
20665604 CATTGTTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
9 8 0.32
10 9 0.36
11 8 0.32
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (10 bp):
AGAAAAAAAG
Found at i:20665590 original size:19 final size:19
Alignment explanation
Indices: 20665562--20665603 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
20665552 AAAAGGTTCG
20665562 AAAAGAAAAAAAG-AGAAA
1 AAAAGAAAAAAAGAAGAAA
20665580 AAAATGAAAAAAAGAAGAAA
1 AAAA-GAAAAAAAGAAGAAA
20665600 AAAA
1 AAAA
20665604 CATTGTTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (19 bp):
AAAAGAAAAAAAGAAGAAA
Found at i:20666377 original size:23 final size:23
Alignment explanation
Indices: 20666339--20666383 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
20666329 TAACGTGACG
* * *
20666339 TCCAGTCAGTAGCTTCTAGAAGA
1 TCCAGTCAGCAACTTCCAGAAGA
20666362 TCCAGTCAGCAACTTCCAGAAG
1 TCCAGTCAGCAACTTCCAGAAG
20666384 GTCTAGTGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (23 bp):
TCCAGTCAGCAACTTCCAGAAGA
Found at i:20666818 original size:43 final size:43
Alignment explanation
Indices: 20666752--20666947 Score: 162
Period size: 43 Copynumber: 4.6 Consensus size: 43
20666742 GTATAGGTTA
* *** **
20666752 TACTTCAATTTATCCGGCAATGCACTTTGTGTGTTAGTATAGT
1 TACTTCAGTTTATCCGATGATGCACTTTGTGTGCCAGTATAGT
* * *
20666795 TACTTCAGTTTATCCGATGATGCA-TTGTGTATGCCAATATAGA
1 TACTTCAGTTTATCCGATGATGCACTT-TGTGTGCCAGTATAGT
* * * * * *
20666838 TGCTTCGGTTTATCCGATGATGTACTATGTCTGCCCGTATAGT
1 TACTTCAGTTTATCCGATGATGCACTTTGTGTGCCAGTATAGT
* * * * * *
20666881 TGCTTCGGTTTATTCGATGGTGCACTATGTGTGCCAGTATATT
1 TACTTCAGTTTATCCGATGATGCACTTTGTGTGCCAGTATAGT
*
20666924 TCCTTCAGTTTAT-CGAATGATGCA
1 TACTTCAGTTTATCCG-ATGATGCA
20666948 TTACATGTGT
Statistics
Matches: 124, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
42 4 0.03
43 119 0.96
44 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (43 bp):
TACTTCAGTTTATCCGATGATGCACTTTGTGTGCCAGTATAGT
Found at i:20666935 original size:86 final size:86
Alignment explanation
Indices: 20666788--20666945 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 86
20666778 TTGTGTGTTA
* * * *
20666788 GTATAGTTACTTCAGTTTATCCGATGATGCATTGTGTATGCCAATATAGATGCTTCGGTTTATCC
1 GTATAGTTACTTCAGTTTATCCGATGATGCACTATGTATGCCAATATAGATCCTTCAGTTTAT-C
20666853 G-ATGATGTACTATGTCTGCCC
65 GAATGATGTACTATGTCTGCCC
* * * * * * **
20666874 GTATAGTTGCTTCGGTTTATTCGATGGTGCACTATGTGTGCCAGTATATTTCCTTCAGTTTATCG
1 GTATAGTTACTTCAGTTTATCCGATGATGCACTATGTATGCCAATATAGATCCTTCAGTTTATCG
20666939 AATGATG
66 AATGATG
20666946 CATTACATGT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
85 2 0.03
86 57 0.97
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (86 bp):
GTATAGTTACTTCAGTTTATCCGATGATGCACTATGTATGCCAATATAGATCCTTCAGTTTATCG
AATGATGTACTATGTCTGCCC
Found at i:20667765 original size:22 final size:21
Alignment explanation
Indices: 20667725--20667765 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
20667715 TAGAATTAAA
* *
20667725 ATAATAATAAAGTATGAAATG
1 ATAATAATAAAATAAGAAATG
20667746 ATAATTAATAAAATAAGAAA
1 ATAA-TAATAAAATAAGAAA
20667766 AAAGGATGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (21 bp):
ATAATAATAAAATAAGAAATG
Found at i:20675539 original size:118 final size:117
Alignment explanation
Indices: 20675325--20675665 Score: 405
Period size: 118 Copynumber: 2.9 Consensus size: 117
20675315 TGCATTTTAT
* * * *
20675325 TTCAGACATTCTGATGAGGCATCGGGTGCCAAATGGTTACTTCGACTACGTGTTGATTAGTGTTG
1 TTCAGACATTC-GATGAGGCACCGGGTGCCAAATGGTTACTTCGACTACGTGTCGATAAGTGCTG
** ***
20675390 GG-AAAATTTTTTACTTCGGTTATACTAATGAGCGTTGGGTGCAAACTAATTAC
65 GGCAAAA-TTTTTACTTCGGTTATACCGATGAGCGTTGGGCAAAAACTAATTAC
* * *
20675443 TTCAGACGCTTCGATGAGGCACCGGGTACCAAATGGTTACTTCGAATACGTGTCGATAAGTGCTG
1 TTCAGAC-ATTCGATGAGGCACCGGGTGCCAAATGGTTACTTCGACTACGTGTCGATAAGTGCTG
* * * * *
20675508 GGCACAATTTTTACTTTGGTTATACCGATGAGCGGTAGGCAAAAACTAGTTAC
65 GGCAAAATTTTTACTTCGGTTATACCGATGAGCGTTGGGCAAAAACTAATTAC
* * * * *
20675561 TTCGGACATTCAACTGAGGCACTGGGTGCCAAATGGTTACTTCGACTAAGTGTCGATGAGTGCTG
1 TTCAGACATTCGA-TGAGGCACCGGGTGCCAAATGGTTACTTCGACTACGTGTCGATAAGTGCTG
* * * *
20675626 GGCAAAATTTCTACTTCGATCATACCGATGAGCATTGGGC
65 GGCAAAATTTTTACTTCGGTTATACCGATGAGCGTTGGGC
20675666 GTAATCAATT
Statistics
Matches: 187, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
117 4 0.02
118 177 0.95
119 6 0.03
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (117 bp):
TTCAGACATTCGATGAGGCACCGGGTGCCAAATGGTTACTTCGACTACGTGTCGATAAGTGCTGG
GCAAAATTTTTACTTCGGTTATACCGATGAGCGTTGGGCAAAAACTAATTAC
Found at i:20679345 original size:24 final size:24
Alignment explanation
Indices: 20679318--20679366 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
20679308 ATACTTAAGG
20679318 TTTGGGTAGAAACCTAATAAGAGT
1 TTTGGGTAGAAACCTAATAAGAGT
20679342 TTTGGGTAGAAACCTAATAAGAGT
1 TTTGGGTAGAAACCTAATAAGAGT
20679366 T
1 T
20679367 CTATCTTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (24 bp):
TTTGGGTAGAAACCTAATAAGAGT
Found at i:20681571 original size:33 final size:33
Alignment explanation
Indices: 20681529--20681594 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
20681519 CCTTTATGTC
*
20681529 TTAAATTGAAAATGATTTTTATATAAGG-GGAGA
1 TTAAATTGAAAATGACTTTTAT-TAAGGAGGAGA
20681562 TTAAATTGAAAATGACTTTTATTAAGGAGGAGA
1 TTAAATTGAAAATGACTTTTATTAAGGAGGAGA
20681595 AATCTATTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.35
Consensus pattern (33 bp):
TTAAATTGAAAATGACTTTTATTAAGGAGGAGA
Found at i:20684441 original size:43 final size:43
Alignment explanation
Indices: 20684377--20684591 Score: 180
Period size: 43 Copynumber: 5.0 Consensus size: 43
20684367 CCGCCAAAAA
* * * ** * *
20684377 TAACGGCGCTTTCCCCACAAACGTTGCTAAAGAAGATGGTCTT
1 TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
* *
20684420 TAACGGTGCTTTTCACTCAAACCCCGCTAAAGAACATGAT-TT
1 TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
* * * * *
20684462 TAGCGGCGCTTTCCCCACAAACGGCGCTAAAGAACATGATCTT
1 TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
* * * * *
20684505 TAATGACGCTTTTCACTCAAACACTGCTAAAGAACATGGTCTT
1 TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
** * * * ** *
20684548 TAGTGGCGCTTTCCCCACAAACGCCATTAAAGAACATGGTCTT
1 TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
20684591 T
1 T
20684592 CCCCATAAAC
Statistics
Matches: 136, Mismatches: 35, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
42 35 0.26
43 101 0.74
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (43 bp):
TAACGGCGCTTTTCACTCAAACGCCGCTAAAGAACATGATCTT
Found at i:20684505 original size:85 final size:86
Alignment explanation
Indices: 20684380--20684591 Score: 291
Period size: 85 Copynumber: 2.5 Consensus size: 86
20684370 CCAAAAATAA
** * ** *
20684380 CGGCGCTTTCCCCACAAACGTTGCTAAAGAAGATGGTCTTTAACGGTGCTTTTCACTCAAACCCC
1 CGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGGTCTTTAACGACGCTTTTCACTCAAACACC
20684445 GCTAAAGAACATGAT-TTTAG
66 GCTAAAGAACATGATCTTTAG
* * * *
20684465 CGGCGCTTTCCCCACAAACGGCGCTAAAGAACATGATCTTTAATGACGCTTTTCACTCAAACACT
1 CGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGGTCTTTAACGACGCTTTTCACTCAAACACC
*
20684530 GCTAAAGAACATGGTCTTTAG
66 GCTAAAGAACATGATCTTTAG
* **
20684551 TGGCGCTTTCCCCACAAACGCCATTAAAGAACATGGTCTTT
1 CGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGGTCTTT
20684592 CCCCATAAAC
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
85 70 0.63
86 41 0.37
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (86 bp):
CGGCGCTTTCCCCACAAACGCCGCTAAAGAACATGGTCTTTAACGACGCTTTTCACTCAAACACC
GCTAAAGAACATGATCTTTAG
Found at i:20684602 original size:32 final size:32
Alignment explanation
Indices: 20684556--20684623 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
20684546 TTTAGTGGCG
20684556 CTTTCCCCACAAACGCCATTAAAGAACATGGT
1 CTTTCCCCACAAACGCCATTAAAGAACATGGT
* * *
20684588 CTTTCCCCATAAACGTCGTTAAAGAACATGGT
1 CTTTCCCCACAAACGCCATTAAAGAACATGGT
20684620 CTTT
1 CTTT
20684624 AGAGGTGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (32 bp):
CTTTCCCCACAAACGCCATTAAAGAACATGGT
Found at i:20690679 original size:34 final size:34
Alignment explanation
Indices: 20690636--20690722 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 34
20690626 ATTTCTTTAG
*
20690636 TTAAATATTTAAATATTTG-GATTGTTTTTAATAA
1 TTAAATATTTAAATATTTGAG-TTGTTGTTAATAA
20690670 TTAAATATTTAATTAAATATTTGAGTTGTTGTTAATAA
1 TTAAATA--T--TTAAATATTTGAGTTGTTGTTAATAA
* *
20690708 TTAACTAATTAAATA
1 TTAAATATTTAAATA
20690723 ATTAAATATT
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
34 14 0.31
36 1 0.02
38 29 0.64
39 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.08, T:0.49
Consensus pattern (34 bp):
TTAAATATTTAAATATTTGAGTTGTTGTTAATAA
Found at i:20690684 original size:12 final size:12
Alignment explanation
Indices: 20690667--20690691 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20690657 TTGTTTTTAA
20690667 TAATTAAATATT
1 TAATTAAATATT
20690679 TAATTAAATATT
1 TAATTAAATATT
20690691 T
1 T
20690692 GAGTTGTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTAAATATT
Found at i:20690728 original size:8 final size:8
Alignment explanation
Indices: 20690703--20690781 Score: 68
Period size: 8 Copynumber: 9.5 Consensus size: 8
20690693 AGTTGTTGTT
20690703 AATAATTA
1 AATAATTA
*
20690711 ACTAATTA
1 AATAATTA
20690719 AATAATTA
1 AATAATTA
*
20690727 AATATTTA
1 AATAATTA
* *
20690735 AATATTTGG
1 AATAATT-A
* * *
20690744 ATTATTTT
1 AATAATTA
20690752 AATAATTAA
1 AATAATT-A
20690761 ATATAATTA
1 A-ATAATTA
20690770 AATAATTA
1 AATAATTA
20690778 AATA
1 AATA
20690782 TTTGGGTTGT
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
8 44 0.75
9 9 0.15
10 6 0.10
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (8 bp):
AATAATTA
Found at i:20690780 original size:51 final size:50
Alignment explanation
Indices: 20690682--20690815 Score: 149
Period size: 43 Copynumber: 2.8 Consensus size: 50
20690672 AAATATTTAA
* *
20690682 TTAAATATTTGAGTTGTTGTTAATAATTAACTAATTAAATAATTAAATAT
1 TTAAATATTTGAGTTATTGTTAATAATTAAATAATTAAATAATTAAATAT
*
20690732 TTAAATATTTG-GATTATT-TTAATAATT--A-AA-T--ATAATTAAATAA
1 TTAAATATTTGAG-TTATTGTTAATAATTAAATAATTAAATAATTAAATAT
* * *
20690775 TTAAATATTTGGGTTGTTGTTAATAATTAACTAATTAAATA
1 TTAAATATTTGAGTTATTGTTAATAATTAAATAATTAAATA
20690816 TTTGGATTGT
Statistics
Matches: 70, Mismatches: 5, Indels: 18
0.75 0.05 0.19
Matches are distributed among these distances:
43 26 0.37
44 10 0.14
45 1 0.01
46 2 0.03
47 2 0.03
48 1 0.01
49 10 0.14
50 18 0.26
ACGTcount: A:0.44, C:0.01, G:0.08, T:0.46
Consensus pattern (50 bp):
TTAAATATTTGAGTTATTGTTAATAATTAAATAATTAAATAATTAAATAT
Found at i:20690795 original size:93 final size:88
Alignment explanation
Indices: 20690636--20690815 Score: 281
Period size: 93 Copynumber: 2.0 Consensus size: 88
20690626 ATTTCTTTAG
*
20690636 TTAAATATTTAAATATTTGGATTGTTTTTAATAATTAAATATTTAATTAAATATTTGAGTTGTTG
1 TTAAATATTTAAATATTTGGATTGATTTTAATAATTAAATATTTAATTAAATATTTGAGTTGTTG
20690701 TTAATAATTAACTAATTAAATAA
66 TTAATAATTAACTAATTAAATAA
*
20690724 TTAAATATTTAAATATTTGGATT-ATTTTAATAATTAAATATAATTAAATAATTAAATATTTGGG
1 TTAAATATTTAAATATTTGGATTGATTTTAATAATT-AA-AT-ATT---TAATTAAATATTTGAG
20690788 TTGTTGTTAATAATTAACTAATTAAATA
60 TTGTTGTTAATAATTAACTAATTAAATA
20690816 TTTGGATTGT
Statistics
Matches: 84, Mismatches: 2, Indels: 7
0.90 0.02 0.08
Matches are distributed among these distances:
87 11 0.13
88 25 0.30
89 2 0.02
90 3 0.04
93 43 0.51
ACGTcount: A:0.43, C:0.01, G:0.08, T:0.48
Consensus pattern (88 bp):
TTAAATATTTAAATATTTGGATTGATTTTAATAATTAAATATTTAATTAAATATTTGAGTTGTTG
TTAATAATTAACTAATTAAATAA
Found at i:20690799 original size:26 final size:26
Alignment explanation
Indices: 20690770--20690867 Score: 88
Period size: 26 Copynumber: 3.5 Consensus size: 26
20690760 AATATAATTA
20690770 AATAATTAAATATTTGGGTTGTTGTTAAT
1 AATAATTAAATATTTGGGTTGTT-TT--T
*
20690799 AATTAACTAATTAAATATTTGGATTGTTTTT
1 AA-T----AATTAAATATTTGGGTTGTTTTT
* **
20690830 AATAATTAAATTTTTTAGTTGTTTTT
1 AATAATTAAATATTTGGGTTGTTTTT
20690856 AATAATTAAATA
1 AATAATTAAATA
20690868 ATTAAATAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
26 30 0.52
29 2 0.03
30 2 0.03
31 3 0.05
33 2 0.03
34 19 0.33
ACGTcount: A:0.38, C:0.01, G:0.10, T:0.51
Consensus pattern (26 bp):
AATAATTAAATATTTGGGTTGTTTTT
Found at i:20690801 original size:34 final size:34
Alignment explanation
Indices: 20690763--20690840 Score: 129
Period size: 34 Copynumber: 2.3 Consensus size: 34
20690753 ATAATTAAAT
*
20690763 ATAATTAAATAATTAAATATTTGGGTTGTTGTTA
1 ATAATTAAATAATTAAATATTTGGATTGTTGTTA
* *
20690797 ATAATTAACTAATTAAATATTTGGATTGTTTTTA
1 ATAATTAAATAATTAAATATTTGGATTGTTGTTA
20690831 ATAATTAAAT
1 ATAATTAAAT
20690841 TTTTTAGTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.41, C:0.01, G:0.10, T:0.47
Consensus pattern (34 bp):
ATAATTAAATAATTAAATATTTGGATTGTTGTTA
Found at i:20690869 original size:8 final size:8
Alignment explanation
Indices: 20690856--20690953 Score: 83
Period size: 8 Copynumber: 11.9 Consensus size: 8
20690846 AGTTGTTTTT
20690856 AATAATTA
1 AATAATTA
20690864 AATAATTA
1 AATAATTA
20690872 AATAA-TA
1 AATAATTA
*
20690879 CAACAATTA
1 -AATAATTA
20690888 AATAATTA
1 AATAATTA
20690896 AAT-ATTAGA
1 AATAATT--A
** *
20690905 AATGTTTTT
1 AAT-AATTA
*
20690914 ATTAATTA
1 AATAATTA
20690922 AATAATTA
1 AATAATTA
*
20690930 AATAATTTG
1 AATAA-TTA
20690939 AATAATTA
1 AATAATTA
20690947 AATAATT
1 AATAATT
20690954 TCAACCGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
7 5 0.07
8 50 0.69
9 15 0.21
11 2 0.03
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (8 bp):
AATAATTA
Found at i:20690942 original size:17 final size:17
Alignment explanation
Indices: 20690922--20690954 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
20690912 TTATTAATTA
20690922 AATAATTAAATAATTTG
1 AATAATTAAATAATTTG
20690939 AATAATTAAATAATTT
1 AATAATTAAATAATTT
20690955 CAACCGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
AATAATTAAATAATTTG
Found at i:20693883 original size:47 final size:47
Alignment explanation
Indices: 20693822--20693931 Score: 148
Period size: 47 Copynumber: 2.3 Consensus size: 47
20693812 GAAATTTGGG
* *
20693822 ATTTGGGGTTTTGAGAGAGGAGAAATCAAGAATAAGAGATTAGGGAA
1 ATTTAGGGTTTTGAGAGAGGAGAAATCAAGAATAAGAGATTAGAGAA
* * * *
20693869 ATTTAGGGTTTTGAGGGAGGAGAAATTAAGAATTAGGGATTAGAGAA
1 ATTTAGGGTTTTGAGAGAGGAGAAATCAAGAATAAGAGATTAGAGAA
* *
20693916 ATTTAAGGTTTGGAGA
1 ATTTAGGGTTTTGAGA
20693932 CAGATCGGAT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.38, C:0.01, G:0.34, T:0.27
Consensus pattern (47 bp):
ATTTAGGGTTTTGAGAGAGGAGAAATCAAGAATAAGAGATTAGAGAA
Found at i:20694311 original size:22 final size:22
Alignment explanation
Indices: 20694283--20694324 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
20694273 GAAATATATC
20694283 TTAACTTGTAATGTAATGTATT
1 TTAACTTGTAATGTAATGTATT
20694305 TTAACTTGTAATGTAATGTA
1 TTAACTTGTAATGTAATGTA
20694325 ATATTTATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (22 bp):
TTAACTTGTAATGTAATGTATT
Found at i:20695713 original size:29 final size:31
Alignment explanation
Indices: 20695666--20695727 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 31
20695656 TTGATTTAAT
* *
20695666 GTGCAATTATATACATGAACTT-TAATT-TG
1 GTGCAATTACACACATGAACTTCTAATTGTG
* *
20695695 GTGCAATTACACACGTGAATTTCTAATTGTG
1 GTGCAATTACACACATGAACTTCTAATTGTG
20695726 GT
1 GT
20695728 TCACATGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 18 0.67
30 5 0.19
31 4 0.15
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.39
Consensus pattern (31 bp):
GTGCAATTACACACATGAACTTCTAATTGTG
Found at i:20696249 original size:40 final size:40
Alignment explanation
Indices: 20696193--20696277 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
20696183 ACAAATGCCA
* **
20696193 CTATTGCTTTATCTTTTGCAACGTTTATATAAAAACGTCG
1 CTATTGCTTTACCTTTTGCAACGTTTATATAAAAACACCG
** *
20696233 CTATTGCTTTACCTTTTGCGGCGTTTATGTAAAAACACCG
1 CTATTGCTTTACCTTTTGCAACGTTTATATAAAAACACCG
20696273 CTATT
1 CTATT
20696278 AATTTACTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (40 bp):
CTATTGCTTTACCTTTTGCAACGTTTATATAAAAACACCG
Found at i:20696284 original size:40 final size:40
Alignment explanation
Indices: 20696200--20696290 Score: 101
Period size: 40 Copynumber: 2.3 Consensus size: 40
20696190 CCACTATTGC
* ** **
20696200 TTTATCTTTTGCAACGTTTATATAAAAACGTCGCTATTGC
1 TTTACCTTTTGCAACGTTTATATAAAAACACCGCTATTAA
** *
20696240 TTTACCTTTTGCGGCGTTTATGTAAAAACACCGCTATTAA
1 TTTACCTTTTGCAACGTTTATATAAAAACACCGCTATTAA
*
20696280 TTTACTTTTTG
1 TTTACCTTTTG
20696291 TGGTGTTTTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.44
Consensus pattern (40 bp):
TTTACCTTTTGCAACGTTTATATAAAAACACCGCTATTAA
Found at i:20700492 original size:2 final size:2
Alignment explanation
Indices: 20700481--20700509 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
20700471 TTTTTAATTA
20700481 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20700510 GTTTTTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:20703565 original size:39 final size:39
Alignment explanation
Indices: 20703522--20703709 Score: 196
Period size: 39 Copynumber: 4.8 Consensus size: 39
20703512 CACAACGGGA
* * * *
20703522 ATATACTGAATTCGCAGTGACACTGTAAGCACTATAATG
1 ATATACTGAACTGGCAGTGACACTGTAAACACTACAATG
* * * *
20703561 ATATACTGAACTGGTAGTGACACTATAAACATTGCAATG
1 ATATACTGAACTGGCAGTGACACTGTAAACACTACAATG
** * **
20703600 ATATACTGAACTGAAAGTGATACTGTAAACACTGTAATG
1 ATATACTGAACTGGCAGTGACACTGTAAACACTACAATG
* * *
20703639 ATATACTGAACTGGCAATAACACTATAAACACTACAATG
1 ATATACTGAACTGGCAGTGACACTGTAAACACTACAATG
* * * *
20703678 TTATACTGAACTAGCGGTGATACTGTAAACAC
1 ATATACTGAACTGGCAGTGACACTGTAAACAC
20703710 CTCAACGGTA
Statistics
Matches: 120, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (39 bp):
ATATACTGAACTGGCAGTGACACTGTAAACACTACAATG
Found at i:20703651 original size:78 final size:78
Alignment explanation
Indices: 20703522--20703709 Score: 234
Period size: 78 Copynumber: 2.4 Consensus size: 78
20703512 CACAACGGGA
* * * * * * * *
20703522 ATATACTGAATTCGCAGTGACACTGTAAGCACTATAATGATATACTGAACTGGTAGTGACACTAT
1 ATATACTGAACTAGAAGTGATACTGTAAACACTATAATGATATACTGAACTGGCAATAACACTAT
* *
20703587 AAACATTGCAATG
66 AAACACTACAATG
*
20703600 ATATACTGAACT-GAAAGTGATACTGTAAACACTGTAATGATATACTGAACTGGCAATAACACTA
1 ATATACTGAACTAG-AAGTGATACTGTAAACACTATAATGATATACTGAACTGGCAATAACACTA
20703664 TAAACACTACAATG
65 TAAACACTACAATG
* **
20703678 TTATACTGAACTAGCGGTGATACTGTAAACAC
1 ATATACTGAACTAGAAGTGATACTGTAAACAC
20703710 CTCAACGGTA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
77 1 0.01
78 93 0.98
79 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (78 bp):
ATATACTGAACTAGAAGTGATACTGTAAACACTATAATGATATACTGAACTGGCAATAACACTAT
AAACACTACAATG
Found at i:20710142 original size:72 final size:72
Alignment explanation
Indices: 20710011--20710148 Score: 188
Period size: 72 Copynumber: 1.9 Consensus size: 72
20710001 TCCACGATCG
** * *
20710011 TGTGTGTATACTAACTTGAGACACACGGGCTAGACTCACGATCGTGCGTCAGACTGTGTGTGCAT
1 TGTGTGTATACTAACTTGAGACACACGGGCTAGAAACACGAGCGTGCGTCAGACCGTGTGTGCAT
20710076 ACTGTTT
66 ACTGTTT
* * * *
20710083 TGTGTGTATACTGACTTGAGACACACTGGCTGGAAACACGAGCGTGTGGT-AGACCGTGTGTGCA
1 TGTGTGTATACTAACTTGAGACACACGGGCTAGAAACACGAGCGTG-CGTCAGACCGTGTGTGCA
20710147 TA
65 TA
20710149 TTGTGTGAGA
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 55 0.96
73 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (72 bp):
TGTGTGTATACTAACTTGAGACACACGGGCTAGAAACACGAGCGTGCGTCAGACCGTGTGTGCAT
ACTGTTT
Found at i:20710572 original size:39 final size:39
Alignment explanation
Indices: 20710528--20710757 Score: 264
Period size: 39 Copynumber: 5.9 Consensus size: 39
20710518 CACGTCGGGA
*
20710528 ATATACTGAACTGGAAGTGACACTGTAAGCACTACAATG
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATG
* * *
20710567 ATATACTGAACTGGCAGTGACATTGTAAACACTGCAATG
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATG
* * * *
20710606 ATATGCTGAACTGGTAGTGACATTGTAAACACTGCAATG
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATG
* *
20710645 ATATACTGAACTGGCAGTGACGCTGTAAACACTACAATG
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATG
* * ** *
20710684 TTATATTGAACT-GACAGTGACACTGTAAACACCGCAACG
1 ATATACTGAACTGGA-AGTGACACTGTAAACACTACAATG
* * * * *
20710723 ATACACTGAAGTAGTAGTAACACTGTAAACACTAC
1 ATATACTGAACTGGAAGTGACACTGTAAACACTAC
20710758 TAGACTATCA
Statistics
Matches: 163, Mismatches: 26, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 161 0.99
40 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (39 bp):
ATATACTGAACTGGAAGTGACACTGTAAACACTACAATG
Found at i:20710662 original size:78 final size:78
Alignment explanation
Indices: 20710528--20710757 Score: 291
Period size: 78 Copynumber: 2.9 Consensus size: 78
20710518 CACGTCGGGA
* * *
20710528 ATATACTGAACTGGAAGTGACACTGTAAGCACTACAATGATATACTGAACTGGCAGTGACATTGT
1 ATATACTGAACTGGAAGTGACACTGTAAACACTGCAATGATATACTGAACTGGCAGTGACACTGT
*
20710593 AAACACTGCAATG
66 AAACACTACAATG
* * * *
20710606 ATATGCTGAACTGGTAGTGACATTGTAAACACTGCAATGATATACTGAACTGGCAGTGACGCTGT
1 ATATACTGAACTGGAAGTGACACTGTAAACACTGCAATGATATACTGAACTGGCAGTGACACTGT
20710671 AAACACTACAATG
66 AAACACTACAATG
* * * * * * * * *
20710684 TTATATTGAACT-GACAGTGACACTGTAAACACCGCAACGATACACTGAAGTAGTAGTAACACTG
1 ATATACTGAACTGGA-AGTGACACTGTAAACACTGCAATGATATACTGAACTGGCAGTGACACTG
20710748 TAAACACTAC
65 TAAACACTAC
20710758 TAGACTATCA
Statistics
Matches: 130, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
77 1 0.01
78 129 0.99
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (78 bp):
ATATACTGAACTGGAAGTGACACTGTAAACACTGCAATGATATACTGAACTGGCAGTGACACTGT
AAACACTACAATG
Found at i:20710740 original size:117 final size:117
Alignment explanation
Indices: 20710528--20710755 Score: 321
Period size: 117 Copynumber: 1.9 Consensus size: 117
20710518 CACGTCGGGA
* * *
20710528 ATATACTGAACTGGAAGTGACACTGTAAGCACTACAATGATATACTGAACTGGCAGTGACATTGT
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATGATATACTGAACTGACAGTGACACTGT
* * ** * * *
20710593 AAACACTGCAATGATATGCTGAACTGGTAGTGACATTGTAAACACTGCAATG
66 AAACACCGCAACGATACACTGAACTAGTAGTAACACTGTAAACACTGCAATG
* * * *
20710645 ATATACTGAACTGGCAGTGACGCTGTAAACACTACAATGTTATATTGAACTGACAGTGACACTGT
1 ATATACTGAACTGGAAGTGACACTGTAAACACTACAATGATATACTGAACTGACAGTGACACTGT
*
20710710 AAACACCGCAACGATACACTGAAGTAGTAGTAACACTGTAAACACT
66 AAACACCGCAACGATACACTGAACTAGTAGTAACACTGTAAACACT
20710756 ACTAGACTAT
Statistics
Matches: 96, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
117 96 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.25
Consensus pattern (117 bp):
ATATACTGAACTGGAAGTGACACTGTAAACACTACAATGATATACTGAACTGACAGTGACACTGT
AAACACCGCAACGATACACTGAACTAGTAGTAACACTGTAAACACTGCAATG
Found at i:20711143 original size:12 final size:12
Alignment explanation
Indices: 20711124--20711159 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
20711114 TAGCAGGGTT
20711124 TAGGGTGTTACA
1 TAGGGTGTTACA
*
20711136 TGGGGTGTTACA
1 TAGGGTGTTACA
*
20711148 TAGGGTGCTACA
1 TAGGGTGTTACA
20711160 ATTTTAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.22, C:0.11, G:0.36, T:0.31
Consensus pattern (12 bp):
TAGGGTGTTACA
Found at i:20714152 original size:34 final size:37
Alignment explanation
Indices: 20714085--20714152 Score: 90
Period size: 34 Copynumber: 1.9 Consensus size: 37
20714075 AAAATAGATA
*
20714085 GTTATTTTATTATAATTGTTTTTGTTTACTTTTTATT
1 GTTATTTTATTATAAGTGTTTTTGTTTACTTTTTATT
20714122 GTTATTTTA-T-TAAGT-TTTTTGTTCTA-TTTTT
1 GTTATTTTATTATAAGTGTTTTTGTT-TACTTTTT
20714153 GCAATTTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 13 0.45
35 6 0.21
36 1 0.03
37 9 0.31
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.71
Consensus pattern (37 bp):
GTTATTTTATTATAAGTGTTTTTGTTTACTTTTTATT
Found at i:20730638 original size:31 final size:33
Alignment explanation
Indices: 20730576--20730645 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 33
20730566 CTTGAGAGCC
20730576 TTTTTTTTTCTGAAGAAGAAGAAGAAGAAATGAA
1 TTTTTTTTTCTGAAGAAG-AGAAGAAGAAATGAA
*
20730610 TTTTTTTTT-TGTAGAAG-GAATGAA-AAATGAA
1 TTTTTTTTTCTGAAGAAGAGAA-GAAGAAATGAA
*
20730641 ATTTT
1 TTTTT
20730646 GGATTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
31 14 0.42
32 3 0.09
33 7 0.21
34 9 0.27
ACGTcount: A:0.40, C:0.01, G:0.19, T:0.40
Consensus pattern (33 bp):
TTTTTTTTTCTGAAGAAGAGAAGAAGAAATGAA
Found at i:20730642 original size:36 final size:34
Alignment explanation
Indices: 20730576--20730642 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
20730566 CTTGAGAGCC
*
20730576 TTTTTTTTTCTGAAGAAGAAGAAGAAGAAATGAA
1 TTTTTTTTTCTGAAGAAGAAGAAAAAGAAATGAA
*
20730610 TTTTTTTTT-TGTAGAAGGAATGAAAAATGAAAT
1 TTTTTTTTTCTGAAGAA-GAA-GAAAAA-GAAAT
20730643 TTTGGATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.21
34 12 0.43
35 5 0.18
36 5 0.18
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.37
Consensus pattern (34 bp):
TTTTTTTTTCTGAAGAAGAAGAAAAAGAAATGAA
Found at i:20731422 original size:29 final size:28
Alignment explanation
Indices: 20731262--20731472 Score: 134
Period size: 30 Copynumber: 7.2 Consensus size: 28
20731252 TTGATTTTTT
*
20731262 CAAAAATTA-CATTTTACCCCCGAACTTC
1 CAAAAATTACCATTTTACCCTCGAA-TTC
*
20731290 C-AAAATT-CCATTATTGA-CCTCGATTTTTC
1 CAAAAATTACCATT-TT-ACCCTCGA--ATTC
20731319 CAAAAATTACCATTTTACCCTCGAACTTC
1 CAAAAATTACCATTTTACCCTCGAA-TTC
* *
20731348 CAAAAATT-TCATTTTTGACCC-CGATTTTTC
1 CAAAAATTACCA-TTTT-ACCCTCGA--ATTC
20731378 CAAAAATTACCATTTTACCCTCGAATGTC
1 CAAAAATTACCATTTTACCCTCGAAT-TC
* *
20731407 TAAAAATT-CCATTTTTGACACT-GAACTTTC
1 CAAAAATTACCA-TTTT-ACCCTCGAA--TTC
* *
20731437 CCAAAATTACCATTTTATCCC-CGGATATC
1 CAAAAATTACCATTTTA-CCCTCGAAT-TC
20731466 CAAAAAT
1 CAAAAAT
20731473 CTCGTTTTCA
Statistics
Matches: 145, Mismatches: 14, Indels: 47
0.70 0.07 0.23
Matches are distributed among these distances:
27 10 0.07
28 15 0.10
29 53 0.37
30 56 0.39
31 11 0.08
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (28 bp):
CAAAAATTACCATTTTACCCTCGAATTC
Found at i:20731443 original size:30 final size:32
Alignment explanation
Indices: 20731146--20731452 Score: 186
Period size: 29 Copynumber: 10.5 Consensus size: 32
20731136 TAAACTGTCT
*
20731146 AAAAATTA-CA-TTTT-ACCCTCGAACTTT-T
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
* * ** *
20731174 TAAAATT-CCATTTTT-AACCTCGATTTTTCA
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
* *
20731204 AAAAATTA-CATTTTT-A-TCTCCAAACTTTCC
1 AAAAATTACCATTTTTGACCCT-CGAACTTTCC
* * ** *
20731234 -AAAATT-CCATTTTTGA-TCTTGATTTTTTC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
*
20731263 AAAAATTA-CA-TTTT-ACCCCCGAAC-TTCC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
* **
20731291 -AAAATT-CCATTATTGA-CCTCGATTTTTCC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
20731320 AAAAATTACCA-TTTT-ACCCTCGAAC-TTCC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
* **
20731349 AAAAATT-TCATTTTTGACCC-CGATTTTTCC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
* *
20731379 AAAAATTACCA-TTTT-ACCCTCGAA-TGTCT
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
*
20731408 AAAAATT-CCATTTTTGACACT-GAACTTTCC
1 AAAAATTACCATTTTTGACCCTCGAACTTTCC
*
20731438 CAAAATTACCATTTT
1 AAAAATTACCATTTT
20731453 ATCCCCGGAT
Statistics
Matches: 213, Mismatches: 40, Indels: 49
0.71 0.13 0.16
Matches are distributed among these distances:
27 8 0.04
28 25 0.12
29 86 0.40
30 82 0.38
31 12 0.06
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (32 bp):
AAAAATTACCATTTTTGACCCTCGAACTTTCC
Found at i:20731472 original size:59 final size:58
Alignment explanation
Indices: 20731146--20731453 Score: 333
Period size: 59 Copynumber: 5.3 Consensus size: 58
20731136 TAAACTGTCT
*** * *
20731146 AAAAATTA-CATTTTACCCTCGAACTTTTTAAAATTCCATTTTTAACCTCGATTTTTCA
1 AAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCT-GATTTTTCC
* * * *
20731204 AAAAATTA-CATTTTTA-TCTCCAAACTTTCC-AAAATTCCATTTTTGATCTTGATTTTTTC
1 AAAAATTACCA-TTTTACCCT-CGAAC-TTCCAAAAATTCCATTTTTGA-CCTGATTTTTCC
* *
20731263 AAAAATTA-CATTTTACCCCCGAACTTCC-AAAATTCCATTATTGACCTCGATTTTTCC
1 AAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCT-GATTTTTCC
* *
20731320 AAAAATTACCATTTTACCCTCGAACTTCCAAAAATTTCATTTTTGACCCCGATTTTTCC
1 AAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTGA-CCTGATTTTTCC
* **
20731379 AAAAATTACCATTTTACCCTCGAA-TGTCTAAAAATTCCATTTTTGACACTGAACTTTCC
1 AAAAATTACCATTTTACCCTCGAACT-TCCAAAAATTCCATTTTTGAC-CTGATTTTTCC
*
20731438 CAAAATTACCATTTTA
1 AAAAATTACCATTTTA
20731454 TCCCCGGATA
Statistics
Matches: 215, Mismatches: 24, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
56 2 0.01
57 35 0.16
58 42 0.20
59 130 0.60
60 6 0.03
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCTCGAACTTCCAAAAATTCCATTTTTGACCTGATTTTTCC
Found at i:20731491 original size:118 final size:116
Alignment explanation
Indices: 20731146--20731484 Score: 287
Period size: 116 Copynumber: 2.9 Consensus size: 116
20731136 TAAACTGTCT
* ** * * ** *
20731146 AAAAATTACATTTTACCCTCGAACTTTTTAAAATTCCATTTTTAACCTCGATTTTTCAAAAAATT
1 AAAAATTACATTTTACCCCCGAAC-TTCAAAAATTCCATTATTGACCTCGAACTTTCCAAAAATT
* * * ** * ** *
20731211 A-CATTTTTA-TCTCCAAACTTTCCAAAATTC-CATTTTTGATCTTGATTTTTTC
65 ACCA-TTTTACCCT-CGAAC-TTCCAAAAATCTCATTTTCAACCCCGATTTTTCC
* **
20731263 AAAAATTACATTTTACCCCCGAACTTCCAAAATTCCATTATTGACCTCGATTTTTCCAAAAATTA
1 AAAAATTACATTTTACCCCCGAACTTCAAAAATTCCATTATTGACCTCGAACTTTCCAAAAATTA
* **
20731328 CCATTTTACCCTCGAACTTCCAAAAATTTCATTTTTGACCCCGATTTTTCC
66 CCATTTTACCCTCGAACTTCCAAAAATCTCATTTTCAACCCCGATTTTTCC
* * *
20731379 AAAAATTACCATTTTACCCTCGAA-TGTCTAAAAATTCCATTTTTGACACT-GAACTTTCCCAAA
1 AAAAATTA-CATTTTACCCCCGAACT-TC-AAAAATTCCATTATTGAC-CTCGAACTTTCCAAAA
* *
20731442 ATTACCATTTTATCCC-CGGA-TATCCAAAAATCTCGTTTTCAAC
62 ATTACCATTTTA-CCCTCGAACT-TCCAAAAATCTCATTTTCAAC
20731485 TTCGATTGTT
Statistics
Matches: 188, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
115 9 0.05
116 72 0.38
117 44 0.23
118 58 0.31
119 5 0.03
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (116 bp):
AAAAATTACATTTTACCCCCGAACTTCAAAAATTCCATTATTGACCTCGAACTTTCCAAAAATTA
CCATTTTACCCTCGAACTTCCAAAAATCTCATTTTCAACCCCGATTTTTCC
Found at i:20731816 original size:97 final size:96
Alignment explanation
Indices: 20731675--20731965 Score: 379
Period size: 97 Copynumber: 3.0 Consensus size: 96
20731665 AATTATTTTA
* *
20731675 AAATCGAGACAATATTCCTTTATTTCGAATTTTGAAAATTTGTGCCTTAACTTATTAGGCGCGAT
1 AAATCGAGGCAATATTCCTTTATTTCG-ATTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGAT
20731740 TTTTCTTCAAATTGGAATAATCGAATACCCTT
65 TTTTCTTCAAATTGGAATAATCGAATACCCTT
* * * *
20731772 CAATCGAGGCAATATTCCTTTGTTTCGAGTTTTGAAAATTTGTGCCTTAA-TGTAGTAGGCGCAA
1 AAATCGAGGCAATATTCCTTTATTTCGA-TTTTGAAAATTTGTGCCTTAACT-TACTAGGCGCGA
* *
20731836 TTTTTCTTCAAATCGAAATAATCGAATACCCTT
64 TTTTTCTTCAAATTGGAATAATCGAATACCCTT
* * * * *
20731869 AAATCGAGGCAATGTTTCTTTATCTCTGATTCTGAAAATTTGTGCCTTGACTTACTAGGCGCGAT
1 AAATCGAGGCAATATTCCTTTATTTC-GATTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGAT
* * *
20731934 TTTTCTCCAAA-TCGAGATAATCGAATATCCTT
65 TTTTCTTCAAATTGGA-ATAATCGAATACCCTT
20731966 TTCCAAAGTT
Statistics
Matches: 168, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
96 3 0.02
97 162 0.96
98 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.15, T:0.38
Consensus pattern (96 bp):
AAATCGAGGCAATATTCCTTTATTTCGATTTTGAAAATTTGTGCCTTAACTTACTAGGCGCGATT
TTTCTTCAAATTGGAATAATCGAATACCCTT
Found at i:20737608 original size:49 final size:49
Alignment explanation
Indices: 20737489--20738601 Score: 256
Period size: 49 Copynumber: 22.6 Consensus size: 49
20737479 ACACGACGGA
* * * * * *
20737489 AAAGATCTAAGACCGCAACGGCAGATCTATTACCGCGAAAACATGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACA-CAAGGG
*
20737539 AAAGATCTAAGACCGCAACGGTGGATCCAGTACCGCGAAGACACAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGGG
*
20737588 AAAGATCTAAGACCGCAACGGTGGATCCAGTACCGCGAAGACACAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGGG
* * * * *
20737637 AAAGATCTAA-ACCACAACGACGGATCCAGTATCGCAAAGATACAAAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAG--ACACAAGGG
* * * * * * * * * *
20737687 AAGGGTATAAG-TCGCAATGGC-CAACCTTGTACCTC-AGAGACATGAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCGA-AGACA-CAAGGG
* * * * * *
20737736 AAAGATCTAAG-CTGCAATGGCAGATCCAGTACTGCAAAGATACAAAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAG--ACACAAGGG
* * * * * * * * * * *
20737786 AAGGGTTTAAG-TCACAACGG-TGAACCTTGTACCTC-AGAGACATGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCGA-AGACA-CAAGGG
* * * *
20737835 AAAGATCTAAGACCACAATGGTGGATCCAGTACCGCAAAGATGCA-AAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGA--CACAAGGG
* * * * * ** * *
20737885 AAAGGTTTAAG-TCGCAACGG-TGAACCTTA-TACC-TTAGAGACATGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATCC--AGTACCGCGA-AGACA-CAAGGG
* * *
20737934 AAAGATCTAAGACCGCAACGACGGATCCAGTACCGCAAAGATACAAAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAG--ACACAAGGG
* * * * * * * * *
20737985 AAGGGTTTAAG-TCACAACGGC-GAACCTTGTACCTC-AGAGACATGAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCGA-AGACA-CAAGGG
** * * *
20738034 AAAGATCTAAG-CCGCAACGGTAGATCCAGTACTGCAAAGATACAAATGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACAC-AA-GGG
* * * * * * * * *
20738084 AAGGGTTTAAG-CTGCAACGAC-GA-ACATTGTACCTC-AGAGACATGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCA--GTACCGCGA-AGACA-CAAGGG
* * *
20738133 AAAGATCTAAGA-CGCAACGGCGAATCCAGTACTGCAAAGATGCA-AAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGA--CACAAGGG
* * * * * * ** *
20738182 AAAGGTTTAAG-TCGCAACGGC-AAACTTA-TACC-TTAGAGACACGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATC-CAGTACCGCGA-AGACAC-AAGGG
* * * *
20738230 AAAGATCTAAGATCGCAACGGCGGATCCAGTACCACAAAGATACAAAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAG--ACACAAGGG
* * * * * * * * ** * * *
20738281 AAGGGTTTAAG-TCGAAACGG-TGAACCTTGTACC-TTAGAGACATGATGAG
1 AAAGATCTAAGACCGCAACGGCGGATCC-AGTACCGCGA-AGACA-CAAGGG
* * * * *
20738330 AAAGATCTAATACAGCAACGGCGGATCTAGTACCACAAAGATGCA-AAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGA--CACAAGGG
* * * * * * *
20738380 AAAGGTTTAAG-TCGCAATGGC-GAGCCTTA-TACCTC-AGAGACATGAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCC--AGTACCGCGA-AGACA-CAAGGG
** * * *
20738429 AAAGATCTAAG-CCATAACGGCGGATCCAGTACCAC-AAAATACGACA-GG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACAC-A-AGGG
* * * * *
20738477 AAAGGTCTAAGACCGCAACGACAGATCCAGTACCCCGAGGACACAAGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGGG
** * * * * *
20738526 AAAGATCTAAG-TTGTAACGGCGGATCTAGTACCAC-AA-AAACGACGGG
1 AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACAC-AAGGG
* * *
20738573 AAAGATCTAAGACCGTAACGACAGATCCA
1 AAAGATCTAAGACCGCAACGGCGGATCCA
20738602 CAAGGAAAAG
Statistics
Matches: 770, Mismatches: 214, Indels: 160
0.67 0.19 0.14
Matches are distributed among these distances:
46 5 0.01
47 21 0.03
48 116 0.15
49 327 0.42
50 245 0.32
51 46 0.06
52 10 0.01
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (49 bp):
AAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCGAAGACACAAGGG
Found at i:20737686 original size:99 final size:100
Alignment explanation
Indices: 20737529--20738496 Score: 921
Period size: 99 Copynumber: 9.8 Consensus size: 100
20737519 TACCGCGAAA
* * *
20737529 ACATGACGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCGCGAAG--ACACAAGGGAAAG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * *
20737592 ATCTAAGACCGCAACGGTGGATCC-AGTACCGC-GAAG
66 GTCTAAG-TCGCAACGGT-GAACCTAGTACCGCAG-AG
* * * * * *
20737628 ACA-CAAGGGAAAGATCTAA-ACCACAACGACGGATCCAGTATCGCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * ** * *
20737691 GTATAAGTCGCAATGGCCAACCTTGTACCTCAGAG
66 GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
* * * * * *
20737726 ACATGAAGGGAAAGATCTAAG-CTGCAATGGCAGATCCAGTACTGCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * * *
20737790 GTTTAAGTCACAACGGTGAACCTTGTACCTCAGAG
66 GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
* * * *
20737825 ACATGACGGGAAAGATCTAAGACCACAATGGTGGATCCAGTACCGCAAAGATGC-AAAGGGAAAG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* **
20737889 GTTTAAGTCGCAACGGTGAACCTTA-TACCTTAGAG
66 GTCTAAGTCGCAACGGTGAACC-TAGTACCGCAGAG
* *
20737924 ACATGACGGGAAAGATCTAAGACCGCAACGACGGATCCAGTACCGCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * * * *
20737989 GTTTAAGTCACAACGGCGAACCTTGTACCTCAGAG
66 GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
* ** * * *
20738024 ACATGAAGGGAAAGATCTAAG-CCGCAACGGTAGATCCAGTACTGCAAAGATACAAATGGGAAGG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* ** * * *
20738088 GTTTAAG-CTGCAACGACGAACATTGTACCTCAGAG
66 GTCTAAGTC-GCAACGGTGAACCTAGTACCGCAGAG
* * *
20738123 ACATGACGGGAAAGATCTAAGA-CGCAACGGCGAATCCAGTACTGCAAAGATGC-AAAGGGAAAG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* ** * **
20738186 GTTTAAGTCGCAACGGCAAACTTA-TACCTTAGAG
66 GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
* * * *
20738220 ACACGACGGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCACAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * * **
20738285 GTTTAAGTCGAAACGGTGAACCTTGTACCTTAGAG
66 GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
* * * * * * *
20738320 ACATGATGAGAAAGATCTAATACAGCAACGGCGGATCTAGTACCACAAAGATGC-AAAGGGAAAG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
* * * * *
20738384 GTTTAAGTCGCAATGGCGAGCCTTA-TACCTCAGAG
66 GTCTAAGTCGCAACGGTGAACC-TAGTACCGCAGAG
* ** * * *
20738419 ACATGAAGGGAAAGATCTAAG-CCATAACGGCGGATCCAGTACCACAAA-ATACGACA-GGAAAG
1 ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
*
20738481 GTCTAAGACCGCAACG
66 GTCTAAG-TCGCAACG
20738497 ACAGATCCAG
Statistics
Matches: 739, Mismatches: 111, Indels: 39
0.83 0.12 0.04
Matches are distributed among these distances:
97 72 0.10
98 117 0.16
99 408 0.55
100 142 0.19
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.16
Consensus pattern (100 bp):
ACATGACGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAAG
GTCTAAGTCGCAACGGTGAACCTAGTACCGCAGAG
Found at i:20737885 original size:198 final size:198
Alignment explanation
Indices: 20737529--20738470 Score: 1100
Period size: 198 Copynumber: 4.8 Consensus size: 198
20737519 TACCGCGAAA
* * * *
20737529 ACATGACGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCGCGAAGACAC-AAGGGAAAGA
1 ACATGACGGGAAAGATCTAAGA-CGCAACGGCGGATCCAGTACCGCAAAGATACAAAGGGAAAGG
* * * * * * *
20737593 TCTAAGACCGCAACGGTGGATCC--AGTACCGC-GAAGACA-CAAGGGAAAGATCTAA-ACCACA
65 TTTAAG-TCACAACGG-CGAACCTTA-TACCTCAG-AGACATGAAGGGAAAGATCTAAGACCACA
* * * * *
20737653 ACGACGGATCCAGTATCGCAAAGATACAAAAGGGAAGGGTATAAGTCGCAATGGCCAACCTTGTA
126 ACGGCGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGCGAACCTTGTA
20737718 CCTCAGAG
191 CCTCAGAG
* * * * *
20737726 ACATGAAGGGAAAGATCTAAG-CTGCAATGGCAGATCCAGTACTGCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGAC-GCAACGGCGGATCCAGTACCGCAAAGATAC-AAAGGGAAAG
* * * *
20737790 GTTTAAGTCACAACGGTGAACCTTGTACCTCAGAGACATGACGGGAAAGATCTAAGACCACAATG
64 GTTTAAGTCACAACGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATCTAAGACCACAACG
* * * * *
20737855 GTGGATCCAGTACCGCAAAGATGC-AAAGGGAAAGGTTTAAGTCGCAACGGTGAACCTTATACCT
129 GCGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGCGAACCTTGTACCT
*
20737919 TAGAG
194 CAGAG
* *
20737924 ACATGACGGGAAAGATCTAAGACCGCAACGACGGATCCAGTACCGCAAAGATACAAAAGGGAAGG
1 ACATGACGGGAAAGATCTAAGA-CGCAACGGCGGATCCAGTACCGCAAAGATAC-AAAGGGAAAG
* *
20737989 GTTTAAGTCACAACGGCGAACCTTGTACCTCAGAGACATGAAGGGAAAGATCTAAG-CCGCAACG
64 GTTTAAGTCACAACGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATCTAAGACCACAACG
** * * * *
20738053 GTAGATCCAGTACTGCAAAGATACAAATGGGAAGGGTTTAAG-CTGCAACGACGAACATTGTACC
129 GCGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTC-GCAACGGCGAACCTTGTACC
20738117 TCAGAG
193 TCAGAG
* * *
20738123 ACATGACGGGAAAGATCTAAGACGCAACGGCGAATCCAGTACTGCAAAGATGCAAAGGGAAAGGT
1 ACATGACGGGAAAGATCTAAGACGCAACGGCGGATCCAGTACCGCAAAGATACAAAGGGAAAGGT
* * * * * * *
20738188 TTAAGTCGCAACGGC-AAACTTATACCTTAGAGACACGACGGGAAAGATCTAAGATCGCAACGGC
66 TTAAGTCACAACGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATCTAAGACCACAACGGC
* * * *
20738252 GGATCCAGTACCACAAAGATACAAAAGGGAAGGGTTTAAGTCGAAACGGTGAACCTTGTACCTTA
131 GGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGCGAACCTTGTACCTCA
20738317 GAG
196 GAG
* * * * * *
20738320 ACATGATGAGAAAGATCTAATACAGCAACGGCGGATCTAGTACCACAAAGATGCAAAGGGAAAGG
1 ACATGACGGGAAAGATCTAAGAC-GCAACGGCGGATCCAGTACCGCAAAGATACAAAGGGAAAGG
* * * *
20738385 TTTAAGTCGCAATGGCGAGCCTTATACCTCAGAGACATGAAGGGAAAGATCTAAG-CCATAACGG
65 TTTAAGTCACAACGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATCTAAGACCACAACGG
*
20738449 CGGATCCAGTACCACAAA-ATAC
130 CGGATCCAGTACCGCAAAGATAC
20738471 GACAGGAAAG
Statistics
Matches: 642, Mismatches: 87, Indels: 32
0.84 0.11 0.04
Matches are distributed among these distances:
195 1 0.00
196 61 0.10
197 151 0.24
198 218 0.34
199 210 0.33
200 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.16
Consensus pattern (198 bp):
ACATGACGGGAAAGATCTAAGACGCAACGGCGGATCCAGTACCGCAAAGATACAAAGGGAAAGGT
TTAAGTCACAACGGCGAACCTTATACCTCAGAGACATGAAGGGAAAGATCTAAGACCACAACGGC
GGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGCAACGGCGAACCTTGTACCTCA
GAG
Found at i:20738496 original size:296 final size:296
Alignment explanation
Indices: 20737529--20738466 Score: 1210
Period size: 296 Copynumber: 3.2 Consensus size: 296
20737519 TACCGCGAAA
* * *
20737529 ACATGACGGGAAAGATCTAAGACCGCAACGGTGGATCCAGTACCGCGAAGA--CACAAGGGAAAG
1 ACATGACGGGAAAGATCTAAG-CCACAACGGCGGATCCAGTACCGCAAAGATGCA-AAGGGAAAG
* * * ** * * ** * *
20737592 ATCTAAGACCGCAACGGTGGATC-CAGTACC-GCGAAGACAC-AAGGGAAAGATCTAA-ACCACA
64 GTTTAAG-TCGCAACGGTCAAACTTA-TACCTTAG-AGACACGACGGGAAAGATCTAAGACCGCA
* * * * *
20737653 ACGACGGATCCAGTATCGCAAAGATACAAAAGGGAAGGGTATAAGTCGCAATGGCCAACCTTGTA
126 ACGACGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGAAACGGCGAACCTTGTA
* *
20737718 CCTCAGAGACATGAAGGGAAAGATCTAAGCTGCAATGGCAGATCCAGTACTGCAAAGATACAAAA
191 CCTCAGAGACATGAAGGGAAAGATCTAAGCAGCAACGGCAGATCCAGTACTGCAAAGATAC-AAA
* *
20737783 GGGAAGGGTTTAAGTCACAACGGTGAACCTTGTACCTCAGAG
255 GGGAAGGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAG
* *
20737825 ACATGACGGGAAAGATCTAAGACCACAATGGTGGATCCAGTACCGCAAAGATGCAAAGGGAAAGG
1 ACATGACGGGAAAGATCTAAG-CCACAACGGCGGATCCAGTACCGCAAAGATGCAAAGGGAAAGG
* * *
20737890 TTTAAGTCGCAACGGTGAACCTTATACCTTAGAGACATGACGGGAAAGATCTAAGACCGCAACGA
65 TTTAAGTCGCAACGGTCAAACTTATACCTTAGAGACACGACGGGAAAGATCTAAGACCGCAACGA
20737955 CGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTC-ACAACGGCGAACCTTGTACCT
130 CGGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGA-AACGGCGAACCTTGTACCT
* *
20738019 CAGAGACATGAAGGGAAAGATCTAAGCCGCAACGGTAGATCCAGTACTGCAAAGATACAAATGGG
194 CAGAGACATGAAGGGAAAGATCTAAGCAGCAACGGCAGATCCAGTACTGCAAAGATACAAA-GGG
* *
20738084 AAGGGTTTAAG-CTGCAACGACGAACATTGTACCTCAGAG
258 AAGGGTTTAAGTC-GCAACGGCGAACCTTGTACCTCAGAG
* * * *
20738123 ACATGACGGGAAAGATCTAAGACGCAACGGCGAATCCAGTACTGCAAAGATGCAAAGGGAAAGGT
1 ACATGACGGGAAAGATCTAAGCCACAACGGCGGATCCAGTACCGCAAAGATGCAAAGGGAAAGGT
* *
20738188 TTAAGTCGCAACGG-CAAACTTATACCTTAGAGACACGACGGGAAAGATCTAAGATCGCAACGGC
66 TTAAGTCGCAACGGTCAAACTTATACCTTAGAGACACGACGGGAAAGATCTAAGACCGCAACGAC
* * *
20738252 GGATCCAGTACCACAAAGATACAAAAGGGAAGGGTTTAAGTCGAAACGGTGAACCTTGTACCTTA
131 GGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGAAACGGCGAACCTTGTACCTCA
* * * * * ** *
20738317 GAGACATGATGAGAAAGATCTAATACAGCAACGGCGGATCTAGTACCACAAAGATGCAAAGGGAA
196 GAGACATGAAGGGAAAGATCTAA-GCAGCAACGGCAGATCCAGTACTGCAAAGATACAAAGGGAA
* * * *
20738382 AGGTTTAAGTCGCAATGGCGAGCCTTATACCTCAGAG
260 GGGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAG
* * *
20738419 ACATGAAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCACAAA
1 ACATGACGGGAAAGATCTAAGCCACAACGGCGGATCCAGTACCGCAAA
20738467 ATACGACAGG
Statistics
Matches: 567, Mismatches: 63, Indels: 24
0.87 0.10 0.04
Matches are distributed among these distances:
296 270 0.48
297 116 0.20
298 181 0.32
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.16
Consensus pattern (296 bp):
ACATGACGGGAAAGATCTAAGCCACAACGGCGGATCCAGTACCGCAAAGATGCAAAGGGAAAGGT
TTAAGTCGCAACGGTCAAACTTATACCTTAGAGACACGACGGGAAAGATCTAAGACCGCAACGAC
GGATCCAGTACCGCAAAGATACAAAAGGGAAGGGTTTAAGTCGAAACGGCGAACCTTGTACCTCA
GAGACATGAAGGGAAAGATCTAAGCAGCAACGGCAGATCCAGTACTGCAAAGATACAAAGGGAAG
GGTTTAAGTCGCAACGGCGAACCTTGTACCTCAGAG
Found at i:20738544 original size:97 final size:96
Alignment explanation
Indices: 20738424--20738601 Score: 284
Period size: 97 Copynumber: 1.8 Consensus size: 96
20738414 CAGAGACATG
*
20738424 AAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCACAAAATACGACAGGAAAGGTCTAAGA
1 AAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCACAAAA-ACGACAGGAAAGATCTAAGA
20738489 CCGCAACGACAGATCCAGTACCCCGAGGACAC
65 CCGCAACGACAGATCCAGTACCCCGAGGACAC
*** * *
20738521 AAGGGAAAGATCTAAGTTGTAACGGCGGATCTAGTACCACAAAAACGACGGGAAAGATCTAAGAC
1 AAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCACAAAAACGACAGGAAAGATCTAAGAC
*
20738586 CGTAACGACAGATCCA
66 CGCAACGACAGATCCA
20738602 CAAGGAAAAG
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 34 0.46
97 40 0.54
ACGTcount: A:0.40, C:0.24, G:0.24, T:0.12
Consensus pattern (96 bp):
AAGGGAAAGATCTAAGCCATAACGGCGGATCCAGTACCACAAAAACGACAGGAAAGATCTAAGAC
CGCAACGACAGATCCAGTACCCCGAGGACAC
Found at i:20738733 original size:48 final size:48
Alignment explanation
Indices: 20738600--20738939 Score: 311
Period size: 48 Copynumber: 7.0 Consensus size: 48
20738590 ACGACAGATC
* * ** * * * *
20738600 CACAAGGAAAAGATCTAAGCCGCGACAACGGATCTAGTACCACAAAAA
1 CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
* ** * ** *
20738648 CACGACGGGAAAGATCTAAGACTACAACGGCGGATCCAGTACTGCAAAGA
1 CAC-AAGGGAAAGATCTAAG-CCGCAACGGCAGATCCAGTACCACGAAGA
* * * * ** *
20738698 CACAAGGAAAAGATCTAAGTCGCGACGGTAGATCCAGTACCATAAAAA
1 CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
** * * * *
20738746 CACAACGGGAAAGATCTAAGACTACAACAGCGGATCCAATACCGCGAAGA
1 CACAA-GGGAAAGATCTAAG-CCGCAACGGCAGATCCAGTACCACGAAGA
* *
20738796 CACAAGGGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGA
1 CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
* * *
20738844 CACAAGGGAAAGATCTAAGCCACAATGGCAGATCCAATACCACGAAGA
1 CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
* * **
20738892 CAGAAGGGAAAGATCTAAGCCGTAACGATAGATCCAGTACCACGAAGA
1 CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
20738940 TTTGATGGGA
Statistics
Matches: 234, Mismatches: 54, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
48 134 0.57
49 55 0.24
50 45 0.19
ACGTcount: A:0.41, C:0.24, G:0.23, T:0.11
Consensus pattern (48 bp):
CACAAGGGAAAGATCTAAGCCGCAACGGCAGATCCAGTACCACGAAGA
Found at i:20738769 original size:98 final size:98
Alignment explanation
Indices: 20738600--20738934 Score: 422
Period size: 98 Copynumber: 3.4 Consensus size: 98
20738590 ACGACAGATC
* * * *
20738600 CACAAGGAAAAGATCTAAGCCGCGACAACGGATCTAGTACCACAAAAACACGACGGGAAAGATCT
1 CACAAGGAAAAGATCTAAGCCGCGACGACAGATCCAGTACCACAAAAACACAACGGGAAAGATCT
* * *
20738665 AAGACTACAACGGCGGATCCAGTACTGCAAAGA
66 AAGACTACAACGGCGGATCCAATACCGCGAAGA
* ** *
20738698 CACAAGGAAAAGATCTAAGTCGCGACGGTAGATCCAGTACCATAAAAACACAACGGGAAAGATCT
1 CACAAGGAAAAGATCTAAGCCGCGACGACAGATCCAGTACCACAAAAACACAACGGGAAAGATCT
*
20738763 AAGACTACAACAGCGGATCCAATACCGCGAAGA
66 AAGACTACAACGGCGGATCCAATACCGCGAAGA
* * * * *
20738796 CACAAGGGAAAGATCTAAGCCGCGACGGCGGATCCAGTACCACGAAGACACAA-GGGAAAGATCT
1 CACAAGGAAAAGATCTAAGCCGCGACGACAGATCCAGTACCACAAAAACACAACGGGAAAGATCT
* * * *
20738860 AAG-CCACAATGGCAGATCCAATACCACGAAGA
66 AAGACTACAACGGCGGATCCAATACCGCGAAGA
* * ** *
20738892 CAGAAGGGAAAGATCTAAGCCGTAACGATAGATCCAGTACCAC
1 CACAAGGAAAAGATCTAAGCCGCGACGACAGATCCAGTACCAC
20738935 GAAGATTTGA
Statistics
Matches: 207, Mismatches: 30, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
96 61 0.29
97 14 0.07
98 132 0.64
ACGTcount: A:0.41, C:0.24, G:0.23, T:0.11
Consensus pattern (98 bp):
CACAAGGAAAAGATCTAAGCCGCGACGACAGATCCAGTACCACAAAAACACAACGGGAAAGATCT
AAGACTACAACGGCGGATCCAATACCGCGAAGA
Found at i:20739259 original size:101 final size:101
Alignment explanation
Indices: 20739076--20739268 Score: 289
Period size: 101 Copynumber: 1.9 Consensus size: 101
20739066 GCAAGTCTTT
* *
20739076 AGTCTTTATCTCTCTGAAGTTGCAGTAAGAGCAAGATGAAGCTTTAACGTCAATTTCTATCCTCT
1 AGTCTTTATCTCTCTGAAGTTGCAGTAAGAGCAAGATGAAGCTTTAACATCAATATCTATCCTCT
*
20739141 TGAACTTGCAGTAAAGTTGGATTAAAAACACTAGCA
66 TGAACTTGCAGCAAAGTTGGATTAAAAACACTAGCA
* * *
20739177 AGTCTTTATCTCTCTGAAGTTGTAGTAAGAGCAAGATGAAGCTTTAACATCAAATAT-TATCTTT
1 AGTCTTTATCTCTCTGAAGTTGCAGTAAGAGCAAGATGAAGCTTTAACATC-AATATCTATCCTC
* * *
20739241 TTGAAGTTTCAGCGAAGTTGGATTAAAA
65 TTGAACTTGCAGCAAAGTTGGATTAAAA
20739269 CTACAGCAGC
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 78 0.95
102 4 0.05
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (101 bp):
AGTCTTTATCTCTCTGAAGTTGCAGTAAGAGCAAGATGAAGCTTTAACATCAATATCTATCCTCT
TGAACTTGCAGCAAAGTTGGATTAAAAACACTAGCA
Found at i:20739818 original size:17 final size:17
Alignment explanation
Indices: 20739793--20739863 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 17
20739783 AATAAGTTTG
*
20739793 AATTTATTTTAAATTCA
1 AATTTATTTTAAATTTA
* * * *
20739810 AATTCATTTTGAGTTTG
1 AATTTATTTTAAATTTA
*
20739827 AATTTACTTTAAATTTA
1 AATTTATTTTAAATTTA
*
20739844 AATTTATTTTAAATTAA
1 AATTTATTTTAAATTTA
20739861 AAT
1 AAT
20739864 AAAATTAAAG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.52
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Done.