Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032251.1 Gossypioides kirkii chromosome KI_09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38743931
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 2800 characters in sequence are not A, C, G, or T
File 91 of 144
Found at i:21175177 original size:22 final size:22
Alignment explanation
Indices: 21175151--21175206 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
21175141 TGCACTAATG
*
21175151 AACGGAGAGCACAAAGGTACTA
1 AACGGAGAGCACAAACGTACTA
* *
21175173 GACGGAGAGCACAAACGTGCTA
1 AACGGAGAGCACAAACGTACTA
*
21175195 AACAGAGAGCAC
1 AACGGAGAGCAC
21175207 TAAATGTGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.29, T:0.07
Consensus pattern (22 bp):
AACGGAGAGCACAAACGTACTA
Found at i:21175228 original size:26 final size:23
Alignment explanation
Indices: 21175154--21175232 Score: 63
Period size: 22 Copynumber: 3.4 Consensus size: 23
21175144 ACTAATGAAC
* * * *
21175154 GGAGAGCACAAAGGTACT-AGAC
1 GGAGAGCACAAACGTGCTAAAAA
*
21175176 GGAGAGCACAAACGTGCTAAACA
1 GGAGAGCACAAACGTGCTAAAAA
*
21175199 -GAGAGCACTAAATGTGCTAATAAA
1 GGAGAGCAC-AAACGTGCTAA-AAA
21175223 TGGAGAGCAC
1 -GGAGAGCAC
21175233 GCTAGGGTCC
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
22 24 0.53
23 11 0.24
24 2 0.04
26 8 0.18
ACGTcount: A:0.42, C:0.18, G:0.28, T:0.13
Consensus pattern (23 bp):
GGAGAGCACAAACGTGCTAAAAA
Found at i:21178207 original size:49 final size:49
Alignment explanation
Indices: 21178167--21178424 Score: 331
Period size: 49 Copynumber: 5.3 Consensus size: 49
21178157 AGTAACAATA
*
21178167 GCGAATCTTATACCCTAGAAATGTAGAGGGAAAGATTGAAGCCGCAAAG
1 GCGAATCTTATACCCTAGAAATGTGGAGGGAAAGATTGAAGCCGCAAAG
* * * *
21178216 GCGAAGCTTATACCCTAGAGATATGGAGGGAAAGATTGAAGCCGTAAAG
1 GCGAATCTTATACCCTAGAAATGTGGAGGGAAAGATTGAAGCCGCAAAG
* *
21178265 GCGAATCTTATACCCTA-AAGATGTGAAGGGAAAGATTGAAGCCACAAAG
1 GCGAATCTTATACCCTAGAA-ATGTGGAGGGAAAGATTGAAGCCGCAAAG
** * * * *
21178314 ATGAATCTTATATCCTA-AAGATGTGGAGGGAAAGATTGATGCCGCTACG
1 GCGAATCTTATACCCTAGAA-ATGTGGAGGGAAAGATTGAAGCCGCAAAG
* * * *
21178363 GCGAATCTTATACCCTAGAGATGTGGAGGGAAAAATTGAAGCTGCAAAT
1 GCGAATCTTATACCCTAGAAATGTGGAGGGAAAGATTGAAGCCGCAAAG
21178412 GCGAATCTTATAC
1 GCGAATCTTATAC
21178425 TCTGAAGATA
Statistics
Matches: 178, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 176 0.99
50 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (49 bp):
GCGAATCTTATACCCTAGAAATGTGGAGGGAAAGATTGAAGCCGCAAAG
Found at i:21178324 original size:98 final size:98
Alignment explanation
Indices: 21178167--21178581 Score: 326
Period size: 98 Copynumber: 4.2 Consensus size: 98
21178157 AGTAACAATA
* *
21178167 GCGAATCTTATACCCTAGAA-ATGT-AGAGGGAAAGATTGAAGCCGCAAAGGCGAAGCTTATACC
1 GCGAATCTTATACCCTA-AAGATGTGA-AGGGAAAGATTGAAGCCACAAAGACGAAGCTTATACC
*
21178230 CTAGAGATATGGAGGGAAAGATTGAAGCCG-TAAAG
64 CTAAAGATATGGAGGGAAAGATTGAAGCCGCT-AAG
* * *
21178265 GCGAATCTTATACCCTAAAGATGTGAAGGGAAAGATTGAAGCCACAAAGATGAATCTTATATCCT
1 GCGAATCTTATACCCTAAAGATGTGAAGGGAAAGATTGAAGCCACAAAGACGAAGCTTATACCCT
* * *
21178330 AAAGATGTGGAGGGAAAGATTGATGCCGCTACG
66 AAAGATATGGAGGGAAAGATTGAAGCCGCTAAG
* * * ** * *
21178363 GCGAATCTTATACCCTAGAGATGTGGAGGGAAAAATTGAAGCTGCAAATG-CGAATCTTATACTC
1 GCGAATCTTATACCCTAAAGATGTGAAGGGAAAGATTGAAGCCACAAA-GACGAAGCTTATACCC
* * * * ** *
21178427 TGAAGATAAGGAGAGG-CAGATTGGAGTTGCGAAG
65 TAAAGATATGGAG-GGAAAGATTGAAGCCGCTAAG
* * * ** ** *
21178461 GC-AAGTCTTATACTCTAAAGAT-T-AAGAAGAGCAGATTGAAGCTGCAAAGGTGAATCTTATAC
1 GCGAA-TCTTATACCCTAAAGATGTGAAG-GGA-AAGATTGAAGCCACAAAGACGAAGCTTATAC
*** ** * *
21178523 CCTAAAGATAAAAAAGGG-CCGATTGAAGTCGCAAAG
63 CCTAAAGAT-ATGGAGGGAAAGATTGAAGCCGCTAAG
* *
21178559 GCGAATTTTATACCTTAAAGATG
1 GCGAATCTTATACCCTAAAGATG
21178582 AAGAAAGGCA
Statistics
Matches: 260, Mismatches: 45, Indels: 23
0.79 0.14 0.07
Matches are distributed among these distances:
96 2 0.01
97 8 0.03
98 239 0.92
99 11 0.04
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (98 bp):
GCGAATCTTATACCCTAAAGATGTGAAGGGAAAGATTGAAGCCACAAAGACGAAGCTTATACCCT
AAAGATATGGAGGGAAAGATTGAAGCCGCTAAG
Found at i:21178417 original size:147 final size:147
Alignment explanation
Indices: 21178169--21178433 Score: 397
Period size: 147 Copynumber: 1.8 Consensus size: 147
21178159 TAACAATAGC
21178169 GAATCTTATACCCTAGAAATGTAGAGGGAAAGATTGAAGCCGCAAAGGCGAAGCTTATACCCTAG
1 GAATCTTATACCCTAGAAATGTAGAGGGAAAGATTGAAGCCGCAAAGGCGAAGCTTATACCCTAG
* *
21178234 AGATATGGAGGGAAAGATTGAAGCCGTAAAGGCGAATCTTATACCCTAAAGATGTGAAGGGAAAG
66 AGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACCCTAAAGATGTGAAGGGAAAG
21178299 ATTGAAGCCACAAAGAT
131 ATTGAAGCCACAAAGAT
* * * * * *
21178316 GAATCTTATATCCTA-AAGATGTGGAGGGAAAGATTGATGCCGCTACGGCGAATCTTATACCCTA
1 GAATCTTATACCCTAGAA-ATGTAGAGGGAAAGATTGAAGCCGCAAAGGCGAAGCTTATACCCTA
* * * * *
21178380 GAGATGTGGAGGGAAAAATTGAAGCTGCAAATGCGAATCTTATACTCTGAAGAT
65 GAGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACCCTAAAGAT
21178434 AAGGAGAGGC
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
146 2 0.02
147 102 0.98
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (147 bp):
GAATCTTATACCCTAGAAATGTAGAGGGAAAGATTGAAGCCGCAAAGGCGAAGCTTATACCCTAG
AGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACCCTAAAGATGTGAAGGGAAAG
ATTGAAGCCACAAAGAT
Found at i:21178470 original size:49 final size:48
Alignment explanation
Indices: 21178397--21178606 Score: 162
Period size: 49 Copynumber: 4.3 Consensus size: 48
21178387 GGAGGGAAAA
* * *
21178397 ATTGAAGCTGCAAATG-CGAATCTTATACTCTGAAGATAAGGAGAGGCAG
1 ATTGAAGCTGCAAAGGTC-AATCTTATACTCTAAAGATAAGAAGA-GCAG
* * *
21178446 ATTGGAGTTGCGAAGG-CAAGTCTTATACTCTAAAGATTAAGAAGAGCAG
1 ATTGAAGCTGCAAAGGTCAA-TCTTATACTCTAAAGA-TAAGAAGAGCAG
* * * * *
21178495 ATTGAAGCTGCAAAGGTGAATCTTATACCCTAAAGATAAAAAAGGGCCG
1 ATTGAAGCTGCAAAGGTCAATCTTATACTCTAAAGAT-AAGAAGAGCAG
*
21178544 ATTGAAG-TCGCAAAGG-CGAATTTTATAC-CTTAAAGATGAAGAA-AGGCAG
1 ATTGAAGCT-GCAAAGGTC-AATCTTATACTC-TAAAGAT-AAGAAGA-GCAG
* *
21178593 ATTAAAGTTGCAAA
1 ATTGAAGCTGCAAA
21178607 AAGCAAGTAT
Statistics
Matches: 131, Mismatches: 21, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
48 5 0.04
49 116 0.89
50 10 0.08
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (48 bp):
ATTGAAGCTGCAAAGGTCAATCTTATACTCTAAAGATAAGAAGAGCAG
Found at i:21178479 original size:147 final size:146
Alignment explanation
Indices: 21178150--21178586 Score: 366
Period size: 147 Copynumber: 3.0 Consensus size: 146
21178140 TTTTTTATGT
** * *
21178150 AGATTGAAGTAACAATAGCGAATCTTATACCCTAGAA-ATGTAGAGGGAAAGATTGAAGCCGCAA
1 AGATTGAAGCCACAA-AGAGAATCTTATACTCTA-AAGATGTAGAGGGAAAGATTGAAGCCGCAA
* *
21178214 AGGCGAAGCTTATACCCTAGAGATATGGAGGGAAAGATTGAAGCCGTAAAGGCGAATCTTATACC
64 AGGCGAAGCTTATACCCTAGAGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACC
**
21178279 CTAAAGATGTGAAGGGAA
129 CTAAAGATAAGAAGGGAA
* * *
21178297 AGATTGAAGCCACAAAGATGAATCTTATA-TCCTAAAGATGTGGAGGGAAAGATTGATGCCGCTA
1 AGATTGAAGCCACAAAGA-GAATCTTATACT-CTAAAGATGTAGAGGGAAAGATTGAAGCCGCAA
* * * * * *
21178361 CGGCGAATCTTATACCCTAGAGATGTGGAGGGAAAAATTGAAGCTGCAAATGCGAATCTTATACT
64 AGGCGAAGCTTATACCCTAGAGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACC
* * *
21178426 CTGAAGATAAGGAGAGG-C
129 CTAAAGATAAGAAG-GGAA
* *** * * * *
21178444 AGATTGGAGTTGCGAAG-GCAAGTCTTATACTCTAAAGAT-TA-AGAAGAGCAGATTGAAGCTGC
1 AGATTGAAGCCACAAAGAG-AA-TCTTATACTCTAAAGATGTAGAG-GGA-AAGATTGAAGCCGC
* * * *** *** * *
21178506 AAAGGTGAATCTTATACCCTAAAGATAAAAAAGGG-CCGATTGAAGTCGCAAAGGCGAATTTTAT
62 AAAGGCGAAGCTTATACCCTAGAGAT-ATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTAT
*
21178570 ACCTTAAAGATGAAGAA
126 ACCCTAAAGAT-AAGAA
21178587 AGGCAGATTA
Statistics
Matches: 230, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
145 3 0.01
146 9 0.04
147 207 0.90
148 11 0.05
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (146 bp):
AGATTGAAGCCACAAAGAGAATCTTATACTCTAAAGATGTAGAGGGAAAGATTGAAGCCGCAAAG
GCGAAGCTTATACCCTAGAGATATGGAGGGAAAAATTGAAGCCGCAAAGGCGAATCTTATACCCT
AAAGATAAGAAGGGAA
Found at i:21178586 original size:98 final size:98
Alignment explanation
Indices: 21178397--21178606 Score: 230
Period size: 98 Copynumber: 2.1 Consensus size: 98
21178387 GGAGGGAAAA
* * * ** * * *
21178397 ATTGAAGCTGCAAATGCGAATCTTATACTCTGAAGATAAGGAGAGGCAGATTGGAGTTGCGAAGG
1 ATTGAAGCTGCAAAGGCGAATCTTATACCCTAAAGATAAAAAGAGGCAGATTGAAGTCGCAAAGG
*
21178462 CAAGTCTTATACTCTAAAGATTAAG-AAGAGCAG
66 CAAGTCTTATACTCTAAAGATGAAGAAAG-GCAG
* *
21178495 ATTGAAGCTGCAAAGGTGAATCTTATACCCTAAAGATAAAAA-AGGGCCGATTGAAGTCGCAAAG
1 ATTGAAGCTGCAAAGGCGAATCTTATACCCTAAAGATAAAAAGA-GGCAGATTGAAGTCGCAAAG
*
21178559 GCGAA-TTTTATAC-CTTAAAGATGAAGAAAGGCAG
65 GC-AAGTCTTATACTC-TAAAGATGAAGAAAGGCAG
* *
21178593 ATTAAAGTTGCAAA
1 ATTGAAGCTGCAAA
21178607 AAGCAAGTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
97 2 0.02
98 87 0.93
99 5 0.05
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (98 bp):
ATTGAAGCTGCAAAGGCGAATCTTATACCCTAAAGATAAAAAGAGGCAGATTGAAGTCGCAAAGG
CAAGTCTTATACTCTAAAGATGAAGAAAGGCAG
Found at i:21180379 original size:27 final size:26
Alignment explanation
Indices: 21180361--21180448 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 26
21180351 TTTATTCTGT
*
21180361 TTTTTTAAATTTAATCCTTTTATTTTA
1 TTTTTTAAATTTAATCCTTTT-TCTTA
21180388 TTTTTTAAATTTAATCCTTTTATCTTA
1 TTTTTTAAATTTAATCCTTTT-TCTTA
*
21180415 TTTTTTAAAAATTTAATCCTTTTTATT-
1 TTTTTT--AAATTTAATCCTTTTTCTTA
21180442 TTTTTTA
1 TTTTTTA
21180449 TTTATTCAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
25 1 0.02
27 38 0.67
28 3 0.05
29 15 0.26
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (26 bp):
TTTTTTAAATTTAATCCTTTTTCTTA
Found at i:21182123 original size:22 final size:22
Alignment explanation
Indices: 21182080--21182125 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
21182070 AATAAATTAA
*
21182080 AAATCAAAACATATTAAGATTT
1 AAATCAAAACAAATTAAGATTT
*
21182102 AAATCAAAATAAATCTAA-ATTT
1 AAATCAAAACAAAT-TAAGATTT
21182124 AA
1 AA
21182126 TATAAGTGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (22 bp):
AAATCAAAACAAATTAAGATTT
Found at i:21182442 original size:31 final size:30
Alignment explanation
Indices: 21182407--21182478 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
21182397 ATTTTATATG
*
21182407 AATTTTGATTTAATGTGTAATGTTATACAT-A
1 AATTTTGATTT--TGTGCAATGTTATACATGA
* * * *
21182438 AATTTTAATTTTGTGCGATTTTATATATGA
1 AATTTTGATTTTGTGCAATGTTATACATGA
21182468 AATTTTGATTT
1 AATTTTGATTT
21182479 GATTAAATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
29 13 0.38
30 11 0.32
31 10 0.29
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (30 bp):
AATTTTGATTTTGTGCAATGTTATACATGA
Found at i:21184303 original size:14 final size:16
Alignment explanation
Indices: 21184266--21184315 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 16
21184256 GGTTTGCACC
*
21184266 TAGGGGTTCACACATG
1 TAGGGATTCACACATG
21184282 TA-GGATTCACAC-T-
1 TAGGGATTCACACATG
* *
21184295 TAGGGATTCATACATT
1 TAGGGATTCACACATG
21184311 TAGGG
1 TAGGG
21184316 TTTGCATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 2 0.07
14 10 0.34
15 10 0.34
16 7 0.24
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (16 bp):
TAGGGATTCACACATG
Found at i:21185671 original size:22 final size:21
Alignment explanation
Indices: 21185633--21185679 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
21185623 TTAATATGAG
21185633 ATATTATATAAAAGGAAATTGA
1 ATATTATATAAAAGGAAATT-A
* *
21185655 ATATTAT-TAACATGGAAGTTA
1 ATATTATATAA-AAGGAAATTA
21185676 ATAT
1 ATAT
21185680 CCTTTTGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (21 bp):
ATATTATATAAAAGGAAATTA
Found at i:21185674 original size:123 final size:123
Alignment explanation
Indices: 21185531--21185899 Score: 576
Period size: 123 Copynumber: 3.0 Consensus size: 123
21185521 GATTTCGTTA
* *
21185531 AATATTGAAAACATGAAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAAGATATAATGTTTTAATAAACCTTCCAT
21185596 ATATTTCTTTAAATAAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
66 ATATTTCTTTAAATAAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
** *
21185654 AATATTATTAACATGGAAGTTAATATCCTTTTGGAAAAGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAAGATATAATGTTTTAATAAACCTTCCAT
** * *
21185719 ATATTTCTTTAAAGGAATACTTCCATTTTAATATGAGATATTATATAAAAAGAAATTG
66 ATATTTCTTTAAATAAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
* * *
21185777 AATATTAAAAATATGAAAGTTAATATCCTTTTGAAAAAGATATAATGTTTTAATAAACCTTCCAC
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAAGATATAATGTTTTAATAAACCTTCCAT
* * *
21185842 ATATTTCTCTAAAGATATATATTTCCATTTTAATATGAGATATTAAAATAAAAGGAAA
66 ATATTTCT-TTAA-ATAAATATTTCCATTTTAATATGAGATATT-ATATAAAAGGAAA
21185900 GATAGCATAA
Statistics
Matches: 221, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
123 181 0.82
124 3 0.01
125 26 0.12
126 11 0.05
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (123 bp):
AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAAGATATAATGTTTTAATAAACCTTCCAT
ATATTTCTTTAAATAAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
Found at i:21190746 original size:21 final size:21
Alignment explanation
Indices: 21190720--21190810 Score: 95
Period size: 21 Copynumber: 4.6 Consensus size: 21
21190710 TGTGCCTAGT
*
21190720 AGGCTTTGTGCTGGTGTTTTC
1 AGGCTTTGTGCCGGTGTTTTC
**
21190741 AGGCTTTGTGCCAATGTTTTC
1 AGGCTTTGTGCCGGTGTTTTC
*
21190762 AGGCTATGTGCC--TAG---T-
1 AGGCTTTGTGCCGGT-GTTTTC
21190778 AGGCTTTGTGCCGGTGTTTTC
1 AGGCTTTGTGCCGGTGTTTTC
21190799 AGGCTTTGTGCC
1 AGGCTTTGTGCC
21190811 TACAAAAGAG
Statistics
Matches: 58, Mismatches: 5, Indels: 14
0.75 0.06 0.18
Matches are distributed among these distances:
16 11 0.19
17 2 0.03
18 1 0.02
19 1 0.02
20 2 0.03
21 41 0.71
ACGTcount: A:0.10, C:0.19, G:0.31, T:0.41
Consensus pattern (21 bp):
AGGCTTTGTGCCGGTGTTTTC
Found at i:21190782 original size:37 final size:37
Alignment explanation
Indices: 21190741--21190812 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
21190731 TGGTGTTTTC
21190741 AGGCTTTGTGCCAATGTTTTCAGGCTATGTGCCTAGT
1 AGGCTTTGTGCCAATGTTTTCAGGCTATGTGCCTAGT
** *
21190778 AGGCTTTGTGCCGGTGTTTTCAGGCTTTGTGCCTA
1 AGGCTTTGTGCCAATGTTTTCAGGCTATGTGCCTA
21190813 CAAAAGAGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.12, C:0.19, G:0.29, T:0.39
Consensus pattern (37 bp):
AGGCTTTGTGCCAATGTTTTCAGGCTATGTGCCTAGT
Found at i:21195600 original size:37 final size:37
Alignment explanation
Indices: 21195502--21195739 Score: 334
Period size: 37 Copynumber: 6.4 Consensus size: 37
21195492 TATCAGGATT
* *
21195502 TGTGCCTAGTAGGCTTCGTACCGGTGTTTTCAGGCTT
1 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
* *
21195539 TG-GCCTAGTAGGCTTTGTGTCGGTGTTTTCAGGCTA
1 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
*
21195575 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTT
1 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
21195612 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
1 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
* * * *
21195649 TGTTCCTAGTAGGCTTCATGCTGGTGTTTTCAGACTA
1 TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
* * *
21195686 TGTGCCTAGTAGGCTTCGTGTCGGTGTATTTCGGGCTT
1 TGTGCCTAGTAGGCTTCGTGCCGGTGT-TTTCAGGCTA
* *
21195724 TATGCCTAGCAGGCTT
1 TGTGCCTAGTAGGCTT
21195740 TATGCCGATA
Statistics
Matches: 178, Mismatches: 21, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
36 32 0.18
37 125 0.70
38 21 0.12
ACGTcount: A:0.11, C:0.20, G:0.31, T:0.38
Consensus pattern (37 bp):
TGTGCCTAGTAGGCTTCGTGCCGGTGTTTTCAGGCTA
Found at i:21195611 original size:21 final size:21
Alignment explanation
Indices: 21195585--21195647 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
21195575 TGTGCCTAGT
21195585 AGGCTTCGTGCCGGTGTTTTC
1 AGGCTTCGTGCCGGTGTTTTC
*
21195606 AGGCTTTGTGCC--TAG---T-
1 AGGCTTCGTGCCGGT-GTTTTC
21195622 AGGCTTCGTGCCGGTGTTTTC
1 AGGCTTCGTGCCGGTGTTTTC
21195643 AGGCT
1 AGGCT
21195648 ATGTTCCTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
16 11 0.33
17 2 0.06
18 1 0.03
19 1 0.03
20 2 0.06
21 16 0.48
ACGTcount: A:0.08, C:0.22, G:0.33, T:0.37
Consensus pattern (21 bp):
AGGCTTCGTGCCGGTGTTTTC
Found at i:21196494 original size:21 final size:21
Alignment explanation
Indices: 21196464--21196503 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
21196454 GCTCATTGTC
*
21196464 AATTTTAGTACCGATAGAACT
1 AATTTAAGTACCGATAGAACT
*
21196485 AATTTAAGTATCGATAGAA
1 AATTTAAGTACCGATAGAA
21196504 ATATCTAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (21 bp):
AATTTAAGTACCGATAGAACT
Found at i:21201089 original size:123 final size:123
Alignment explanation
Indices: 21200912--21201256 Score: 557
Period size: 123 Copynumber: 2.8 Consensus size: 123
21200902 GATTTCATTA
* *
21200912 AATATTAAAAATATGAAAGTTAA-ATCCTTTTGGAAAGGATATAATGTTTTAATAACCCTTCCAT
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
* *
21200976 ATATTTTTTTAAAGAAATATTTCCATTTTAATATGAGATATTATATAAAAGGAAATTG
66 ATATTTCTTTAAAGAAATATTTCCATTTTAATATGAGATATTATATAAAAAGAAATTG
* * * *
21201034 AATATTAAAAACATGGAAGTTAATATCTTTTTAGAAATGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
**
21201099 ATATTTCTTTAAAGGGATATTTCCATTTTAATATGAGATATTATATAAAAAGAAATTG
66 ATATTTCTTTAAAGAAATATTTCCATTTTAATATGAGATATTATATAAAAAGAAATTG
*
21201157 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAGGATAAAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
*
21201222 ATATTTCTCTAAAGATATATATTTCCATTTTAATA
66 ATATTTCTTTAAAGA-A-ATATTTCCATTTTAATA
21201257 CGAGTTTTTT
Statistics
Matches: 202, Mismatches: 18, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
122 21 0.10
123 164 0.81
125 17 0.08
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (123 bp):
AATATTAAAAACATGAAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
ATATTTCTTTAAAGAAATATTTCCATTTTAATATGAGATATTATATAAAAAGAAATTG
Found at i:21206312 original size:59 final size:59
Alignment explanation
Indices: 21206216--21206365 Score: 219
Period size: 59 Copynumber: 2.5 Consensus size: 59
21206206 ATATGTATAG
* * *
21206216 AGTTCACATATGTTATCATGTAAGGTTCACATCTTAAATCCTATTCCATAAAACATGAA
1 AGTTCACATATGTTATCATGTAGGGTTCGCATCTTAAATCATATTCCATAAAACATGAA
* * *
21206275 AGTTCATATATGTTATCATGTAGGGTTCGCATTTTAAATCATATTCCATAAAACATGAG
1 AGTTCACATATGTTATCATGTAGGGTTCGCATCTTAAATCATATTCCATAAAACATGAA
* * *
21206334 GGTCCACATATATTATCATGTAGGGTTCGCAT
1 AGTTCACATATGTTATCATGTAGGGTTCGCAT
21206366 GATATTTCCT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
59 81 1.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (59 bp):
AGTTCACATATGTTATCATGTAGGGTTCGCATCTTAAATCATATTCCATAAAACATGAA
Found at i:21206371 original size:24 final size:22
Alignment explanation
Indices: 21206343--21206387 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
21206333 GGGTCCACAT
*
21206343 ATATTATCATGTAGGGTTCGCATG
1 ATATT-TCATATA-GGTTCGCATG
*
21206367 ATATTTCCTATAGGTTCGCAT
1 ATATTTCATATAGGTTCGCAT
21206388 TGATTTACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
23 5 0.26
24 5 0.26
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (22 bp):
ATATTTCATATAGGTTCGCATG
Found at i:21206445 original size:32 final size:32
Alignment explanation
Indices: 21206398--21206631 Score: 173
Period size: 32 Copynumber: 7.6 Consensus size: 32
21206388 TGATTTACTA
* * *
21206398 AGGGGATTCGTATATAATGTTTCACATGCAAG
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* * *
21206430 AGGGGGTTCACATATAAGGTTTCATATGCAAT
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* * * *
21206462 A---AGCTCGTC-TATAGGGTTTCACATGTAAG
1 AGGGGGTTCG-CATATAAGGTTTCACATGCAAG
* *
21206491 AGAGGGTTCGTATATAAGGTTTCACATGCAA-
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* * * *
21206522 A--GGGCTCGCCTATAGGGTTTCACACGCAAG
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* *
21206552 AAGGGGTTCGCATATAAGGTTTCACATGTAAG
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* * *
21206584 A--GGCTT-GCCTATAGGGTTTCACATGCAAG
1 AGGGGGTTCGCATATAAGGTTTCACATGCAAG
* * *
21206613 AAGGGGTTTGTATATAAGG
1 AGGGGGTTCGCATATAAGG
21206632 GCTCGCACAC
Statistics
Matches: 155, Mismatches: 36, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
29 64 0.41
30 6 0.04
31 5 0.03
32 80 0.52
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (32 bp):
AGGGGGTTCGCATATAAGGTTTCACATGCAAG
Found at i:21206511 original size:61 final size:60
Alignment explanation
Indices: 21206416--21206631 Score: 281
Period size: 61 Copynumber: 3.5 Consensus size: 60
21206406 CGTATATAAT
* * * * *
21206416 GTTTCACATGCAAGAGGGGGTTCACATATAAGGTTTCATATGCAATAAGCTCGTCTATAGG
1 GTTTCACATGCAAGAAGGGGTTCGCATATAAGGTTTCACATGCAA-AGGCTCGCCTATAGG
* *
21206477 GTTTCACATGTAAG-AGAGGGTTCGTATATAAGGTTTCACATGCAAAGGGCTCGCCTATAGG
1 GTTTCACATGCAAGAAG-GGGTTCGCATATAAGGTTTCACATGCAAA-GGCTCGCCTATAGG
* * *
21206538 GTTTCACACGCAAGAAGGGGTTCGCATATAAGGTTTCACATGTAAGAGGCTTGCCTATAGG
1 GTTTCACATGCAAGAAGGGGTTCGCATATAAGGTTTCACATGCAA-AGGCTCGCCTATAGG
* *
21206599 GTTTCACATGCAAGAAGGGGTTTGTATATAAGG
1 GTTTCACATGCAAGAAGGGGTTCGCATATAAGG
21206632 GCTCGCACAC
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
60 2 0.01
61 131 0.96
62 3 0.02
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (60 bp):
GTTTCACATGCAAGAAGGGGTTCGCATATAAGGTTTCACATGCAAAGGCTCGCCTATAGG
Found at i:21206613 original size:29 final size:30
Alignment explanation
Indices: 21206410--21206613 Score: 146
Period size: 29 Copynumber: 6.7 Consensus size: 30
21206400 GGGATTCGTA
* *
21206410 TATAATGTTTCACATGCAAGAGGGGGTT-CAC
1 TATAAGGTTTCACATGCAAGA-GGGCTTGC-C
* * * * *
21206441 ATATAAGGTTTCATATGCAATA-AGCTCGTC
1 -TATAAGGTTTCACATGCAAGAGGGCTTGCC
* * * **
21206471 TATAGGGTTTCACATGTAAGAGAGGGTTCGTA
1 TATAAGGTTTCACATGCAAGAG-GGCTT-GCC
*
21206503 TATAAGGTTTCACATGCAA-AGGGCTCGCC
1 TATAAGGTTTCACATGCAAGAGGGCTTGCC
* * * *
21206532 TATAGGGTTTCACACGCAAGAAGGGGTTCGCA
1 TATAAGGTTTCACATGCAAG-AGGGCTT-GCC
*
21206564 TATAAGGTTTCACATGTAAGA-GGCTTGCC
1 TATAAGGTTTCACATGCAAGAGGGCTTGCC
*
21206593 TATAGGGTTTCACATGCAAGA
1 TATAAGGTTTCACATGCAAGA
21206614 AGGGGTTTGT
Statistics
Matches: 132, Mismatches: 33, Indels: 17
0.73 0.18 0.09
Matches are distributed among these distances:
29 56 0.42
30 10 0.08
31 10 0.08
32 56 0.42
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (30 bp):
TATAAGGTTTCACATGCAAGAGGGCTTGCC
Found at i:21206661 original size:61 final size:60
Alignment explanation
Indices: 21206416--21206663 Score: 164
Period size: 61 Copynumber: 4.1 Consensus size: 60
21206406 CGTATATAAT
* * * ** * * * *
21206416 GTTTCACATGCAAGAGGGGGTTCACATATAAGGTTTCATATGCAATAAGCTCGTC-TATAGG
1 GTTTCACACGCAAGAAGGGGTTCGCATATAAGGGCTCACA-GCAAGAGGCTTG-CATATAGG
* * * ** * *
21206477 GTTTCACATGTAAG-AGAGGGTTCGTATATAAGGTTTCACATGCAA-AGGGCTCGCCTATAGG
1 GTTTCACACGCAAGAAG-GGGTTCGCATATAAGGGCTCACA-GCAAGA-GGCTTGCATATAGG
** * *
21206538 GTTTCACACGCAAGAAGGGGTTCGCATATAAGGTTTCACATGTAAGAGGCTTGCCTATAGG
1 GTTTCACACGCAAGAAGGGGTTCGCATATAAGGGCTCACA-GCAAGAGGCTTGCATATAGG
* * * *
21206599 GTTTCACATGCAAGAAGGGGTTTGTATATAAGGGCTCGCA-CACAGAGGCTCATGCATA-AGG
1 GTTTCACACGCAAGAAGGGGTTCGCATATAAGGGCTCACAGCA-AGAGGCT--TGCATATAGG
21206660 GTTT
1 GTTT
21206664 TGCACAAATA
Statistics
Matches: 160, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
59 1 0.01
60 10 0.06
61 141 0.88
62 8 0.05
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (60 bp):
GTTTCACACGCAAGAAGGGGTTCGCATATAAGGGCTCACAGCAAGAGGCTTGCATATAGG
Found at i:21207762 original size:25 final size:24
Alignment explanation
Indices: 21207734--21207801 Score: 82
Period size: 25 Copynumber: 2.8 Consensus size: 24
21207724 CTTCCAAAAA
21207734 TTTAGCTCATACGAGCCCAGACAAC
1 TTTAGCTCATACGAGCCCAGA-AAC
* **
21207759 TTTAGCTCACACGAGCCCAGAATG
1 TTTAGCTCATACGAGCCCAGAAAC
* *
21207783 GTTAGCTCTTACGAGCCCA
1 TTTAGCTCATACGAGCCCA
21207802 AAATGGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 17 0.46
25 20 0.54
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (24 bp):
TTTAGCTCATACGAGCCCAGAAAC
Found at i:21207796 original size:24 final size:24
Alignment explanation
Indices: 21207735--21207871 Score: 179
Period size: 24 Copynumber: 5.7 Consensus size: 24
21207725 TTCCAAAAAT
*
21207735 TTAGCTCATACGAGCCCAGACAACT--
1 TTAGCTCTTACGAGCCCA-A-AA-TGG
** *
21207760 TTAGCTCACACGAGCCCAGAATGG
1 TTAGCTCTTACGAGCCCAAAATGG
21207784 TTAGCTCTTACGAGCCCAAAATGG
1 TTAGCTCTTACGAGCCCAAAATGG
* *
21207808 TTAGCTTTTATGAGCCCAAAATGG
1 TTAGCTCTTACGAGCCCAAAATGG
21207832 TTAGCTCTTACGAGCCCAAAATGG
1 TTAGCTCTTACGAGCCCAAAATGG
21207856 TTAGCTCTTACGAGCC
1 TTAGCTCTTACGAGCC
21207872 TAGACAGAGT
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 81 0.80
25 17 0.17
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (24 bp):
TTAGCTCTTACGAGCCCAAAATGG
Found at i:21211128 original size:40 final size:40
Alignment explanation
Indices: 21211073--21211211 Score: 190
Period size: 40 Copynumber: 3.5 Consensus size: 40
21211063 ACTGGATTCT
*
21211073 TGAAAAGGTTGAAAAGGATATTATCTGAAAGGATATCAAA
1 TGAAAAGGTTGAAAAGGATATTATCCGAAAGGATATCAAA
* *
21211113 TGAAAAGGTTGAAAAGGATGTTACCCGAAAGGATATCAAA
1 TGAAAAGGTTGAAAAGGATATTATCCGAAAGGATATCAAA
* * *
21211153 TGAAAATGTTGAAAAGGATGTCATCCGAAAGGATATC-AA
1 TGAAAAGGTTGAAAAGGATATTATCCGAAAGGATATCAAA
* * *
21211192 TAAAAAGGTCGAAAAAGATA
1 TGAAAAGGTTGAAAAGGATA
21211212 GCAATGAAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 17 0.19
40 71 0.81
ACGTcount: A:0.47, C:0.08, G:0.23, T:0.22
Consensus pattern (40 bp):
TGAAAAGGTTGAAAAGGATATTATCCGAAAGGATATCAAA
Found at i:21212369 original size:21 final size:21
Alignment explanation
Indices: 21212324--21212373 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
21212314 GTCTAGTTTG
*
21212324 TATCGGTAGAATCCAGAGTTG
1 TATCGGTAGAATCCAGAGTTC
21212345 TATCGGTAGAACTCTCA-A-TTC
1 TATCGGTAGAA-TC-CAGAGTTC
21212366 TATCGGTA
1 TATCGGTA
21212374 AAGTTTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 21 0.81
22 3 0.12
23 2 0.08
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (21 bp):
TATCGGTAGAATCCAGAGTTC
Found at i:21213791 original size:41 final size:42
Alignment explanation
Indices: 21213700--21213806 Score: 121
Period size: 41 Copynumber: 2.6 Consensus size: 42
21213690 ATTATATTGT
* *
21213700 TATTTTGGTGCTT-TTTTTACTGTTTTGGTTGTTGTTTTTTGC
1 TATTTTGGT-CTTGTTTTTACTGTTTTGGATGTTGTTTTTTAC
* *
21213742 TCTTTTGGTATTGTTTTTACTGTTTT-GATGCTT-TTTTTTAC
1 TATTTTGGTCTTGTTTTTACTGTTTTGGATG-TTGTTTTTTAC
* *
21213783 TATTTTGGTCCTGTTTTTATTGTT
1 TATTTTGGTCTTGTTTTTACTGTT
21213807 GTTTTTGTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 32 0.58
42 23 0.42
ACGTcount: A:0.07, C:0.08, G:0.18, T:0.66
Consensus pattern (42 bp):
TATTTTGGTCTTGTTTTTACTGTTTTGGATGTTGTTTTTTAC
Found at i:21213799 original size:21 final size:21
Alignment explanation
Indices: 21213700--21213800 Score: 89
Period size: 21 Copynumber: 4.9 Consensus size: 21
21213690 ATTATATTGT
21213700 TATTTTGGTGCT-TTTTTTAC
1 TATTTTGGTGCTGTTTTTTAC
* * *
21213720 TGTTTTGGTTGTTGTTTTTTGC
1 TATTTTGG-TGCTGTTTTTTAC
* **
21213742 TCTTTTGGTATTG-TTTTTAC
1 TATTTTGGTGCTGTTTTTTAC
* * *
21213762 TGTTTTGATGCTTTTTTTTAC
1 TATTTTGGTGCTGTTTTTTAC
*
21213783 TATTTTGGTCCTGTTTTT
1 TATTTTGGTGCTGTTTTT
21213801 ATTGTTGTTT
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
20 21 0.33
21 28 0.44
22 14 0.22
ACGTcount: A:0.07, C:0.09, G:0.18, T:0.66
Consensus pattern (21 bp):
TATTTTGGTGCTGTTTTTTAC
Found at i:21213831 original size:33 final size:32
Alignment explanation
Indices: 21213794--21213855 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
21213784 ATTTTGGTCC
* *
21213794 TGTTTTTATTGTTGTTTTTGTTGCTATTTTTGT
1 TGTTTTTAGTGTTG-TTTTGCTGCTATTTTTGT
21213827 TGTTTTTAGTGTTGTTTTGCTGCTATTTT
1 TGTTTTTAGTGTTGTTTTGCTGCTATTTT
21213856 GGTTACTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.06, C:0.05, G:0.19, T:0.69
Consensus pattern (32 bp):
TGTTTTTAGTGTTGTTTTGCTGCTATTTTTGT
Found at i:21213872 original size:32 final size:30
Alignment explanation
Indices: 21213797--21213875 Score: 77
Period size: 32 Copynumber: 2.4 Consensus size: 30
21213787 TTGGTCCTGT
* * *
21213797 TTTTATTGTTGTTTTTGTTGCTATTTTTGTTG
1 TTTT-TTGTTG-TTTTGCTGCTATTTTGGTTC
21213829 TTTTTAGTGTTGTTTTGCTGCTATTTTGGTTAC
1 TTTTT--TGTTGTTTTGCTGCTATTTTGGTT-C
21213862 TATTTTTGTTGTTT
1 T-TTTTTGTTGTTT
21213876 GGATGTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
31 1 0.03
32 29 0.73
33 6 0.15
34 4 0.10
ACGTcount: A:0.08, C:0.05, G:0.19, T:0.68
Consensus pattern (30 bp):
TTTTTTGTTGTTTTGCTGCTATTTTGGTTC
Found at i:21215140 original size:31 final size:30
Alignment explanation
Indices: 21215084--21215141 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
21215074 TAGCAAAATT
* *
21215084 AACAATAAAACAAGAGTTATACAATATCCA
1 AACAATAAAACAAGAATAATACAATATCCA
21215114 AACAATAACAACAA-AATAATAGCAATAT
1 AACAATAA-AACAAGAATAATA-CAATAT
21215142 AATAGCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 11 0.46
ACGTcount: A:0.60, C:0.16, G:0.05, T:0.19
Consensus pattern (30 bp):
AACAATAAAACAAGAATAATACAATATCCA
Found at i:21229420 original size:20 final size:20
Alignment explanation
Indices: 21229395--21229436 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
21229385 AATTGGAGTA
21229395 TGTTGCCTAAGTGGCTCAAG
1 TGTTGCCTAAGTGGCTCAAG
* *
21229415 TGTTGCTTAAGTGGTTCAAG
1 TGTTGCCTAAGTGGCTCAAG
21229435 TG
1 TG
21229437 GTACCATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.14, G:0.31, T:0.36
Consensus pattern (20 bp):
TGTTGCCTAAGTGGCTCAAG
Found at i:21239582 original size:26 final size:26
Alignment explanation
Indices: 21239552--21239606 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
21239542 AAAGGGATAT
**
21239552 ATAGAATATTTTGGAAAGATAAAATA
1 ATAGAATATTTTAAAAAGATAAAATA
*
21239578 ATAGAATATTTTAAAAATATAAAATA
1 ATAGAATATTTTAAAAAGATAAAATA
21239604 ATA
1 ATA
21239607 ATTCTAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (26 bp):
ATAGAATATTTTAAAAAGATAAAATA
Found at i:21242372 original size:50 final size:50
Alignment explanation
Indices: 21242304--21242398 Score: 181
Period size: 50 Copynumber: 1.9 Consensus size: 50
21242294 ATCATTAGAT
21242304 GCAGAGTCAATTCCATGCAAAAATTAGTTACTTGATGATCAAGATTAGTA
1 GCAGAGTCAATTCCATGCAAAAATTAGTTACTTGATGATCAAGATTAGTA
*
21242354 GCAGAGTCAATTCTATGCAAAAATTAGTTACTTGATGATCAAGAT
1 GCAGAGTCAATTCCATGCAAAAATTAGTTACTTGATGATCAAGAT
21242399 CAAGTGCTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (50 bp):
GCAGAGTCAATTCCATGCAAAAATTAGTTACTTGATGATCAAGATTAGTA
Found at i:21246825 original size:18 final size:17
Alignment explanation
Indices: 21246793--21246826 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21246783 AATAATCTAA
*
21246793 TTTAAATTTTAATTATT
1 TTTAAATTGTAATTATT
21246810 TTTAAATATGTAATTAT
1 TTTAAAT-TGTAATTAT
21246827 CATAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (17 bp):
TTTAAATTGTAATTATT
Found at i:21255058 original size:16 final size:18
Alignment explanation
Indices: 21255024--21255066 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
21255014 CAATTTTTAA
21255024 TAAAAAAATATGAATATT
1 TAAAAAAATATGAATATT
*
21255042 TAAAAATATAT-AA-ATT
1 TAAAAAAATATGAATATT
*
21255058 TATAAAAAT
1 TAAAAAAAT
21255067 TATTTTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 10 0.45
17 2 0.09
18 10 0.45
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (18 bp):
TAAAAAAATATGAATATT
Found at i:21255522 original size:29 final size:27
Alignment explanation
Indices: 21255490--21255569 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 27
21255480 TATAAGTTTG
*
21255490 TAAAAAAATTATTAAAATTTATAAAATAT
1 TAAAAAAATTATTAAAAATT-TAAAA-AT
*
21255519 TAAATAAAGTTA--AAAAATTTAAAAAT
1 TAAA-AAAATTATTAAAAATTTAAAAAT
* *
21255545 TAATAAAAATTATTTAAAAGTTAAA
1 TAA-AAAAATTATTAAAAATTTAAA
21255570 TCCAAAATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
26 11 0.26
27 6 0.14
28 15 0.36
29 4 0.10
30 6 0.14
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (27 bp):
TAAAAAAATTATTAAAAATTTAAAAAT
Found at i:21255729 original size:15 final size:16
Alignment explanation
Indices: 21255696--21255729 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
21255686 GGATGTATAC
21255696 AAAATAAAAAAATTAT
1 AAAATAAAAAAATTAT
*
21255712 AAAATAAATAAA-TAT
1 AAAATAAAAAAATTAT
21255727 AAA
1 AAA
21255730 TAATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATAAAAAAATTAT
Found at i:21256892 original size:23 final size:23
Alignment explanation
Indices: 21256859--21256903 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
21256849 TTGATTTTCT
*
21256859 CTGCTTCTTAGCATGTTGTTCCG
1 CTGCTTCTTAGCACGTTGTTCCG
* *
21256882 CTGCTTTTTAGTACGTTGTTCC
1 CTGCTTCTTAGCACGTTGTTCC
21256904 TTCTTCACTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.09, C:0.24, G:0.20, T:0.47
Consensus pattern (23 bp):
CTGCTTCTTAGCACGTTGTTCCG
Found at i:21262604 original size:19 final size:20
Alignment explanation
Indices: 21262555--21262626 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
21262545 ATGATTTTGA
*
21262555 TTTTAA-TTTAATAATTTAATT
1 TTTTAATTTTTATAATTT-A-T
21262576 TTTTATATTTTTATAA-TTAT
1 TTTTA-ATTTTTATAATTTAT
*
21262596 TTTTAATTTTTGTAATTTTAT
1 TTTTAATTTTTATAA-TTTAT
*
21262617 TTTGAATTTT
1 TTTTAATTTT
21262627 AATATATAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
19 9 0.20
20 6 0.14
21 19 0.43
22 3 0.07
23 7 0.16
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTAATTTTTATAATTTAT
Found at i:21263674 original size:20 final size:20
Alignment explanation
Indices: 21263649--21263700 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
21263639 GGCCTGAGAC
*
21263649 TTCTATCGATAGAACTTCAG
1 TTCTATCGATACAACTTCAG
*
21263669 TTCTATCGATACAAGTTCAG
1 TTCTATCGATACAACTTCAG
* *
21263689 TTTTACCGATAC
1 TTCTATCGATAC
21263701 CTTGAAGACT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (20 bp):
TTCTATCGATACAACTTCAG
Found at i:21266478 original size:20 final size:20
Alignment explanation
Indices: 21266426--21266466 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
21266416 CTACCCTAGG
21266426 ACTTCTACCGATAGAACTTC
1 ACTTCTACCGATAGAACTTC
*
21266446 ACTTCTACCGATATAACTTC
1 ACTTCTACCGATAGAACTTC
21266466 A
1 A
21266467 GTTTTATCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.29, G:0.07, T:0.32
Consensus pattern (20 bp):
ACTTCTACCGATAGAACTTC
Found at i:21268399 original size:26 final size:23
Alignment explanation
Indices: 21268362--21268422 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 23
21268352 TACAAGAACT
21268362 TATGACATATTTTAACCTAATATAAAA
1 TATGA-ATATTTTAA--TAATAT-AAA
*
21268389 TATGAATATTTTAATTATATAAA
1 TATGAATATTTTAATAATATAAA
*
21268412 TATAAATATTT
1 TATGAATATTT
21268423 ATTTAAACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 13 0.41
24 5 0.16
26 9 0.28
27 5 0.16
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (23 bp):
TATGAATATTTTAATAATATAAA
Found at i:21270382 original size:13 final size:12
Alignment explanation
Indices: 21270345--21270387 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
21270335 CTTATATATA
21270345 TAATAAATCAAA-
1 TAATAAAT-AAAG
21270357 TAAATAAATAAAG
1 T-AATAAATAAAG
21270370 TAATAAATAAAAG
1 TAATAAAT-AAAG
21270383 TAATA
1 TAATA
21270388 TCCTTGTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.39
13 17 0.61
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (12 bp):
TAATAAATAAAG
Found at i:21273785 original size:45 final size:45
Alignment explanation
Indices: 21273735--21273976 Score: 250
Period size: 45 Copynumber: 5.1 Consensus size: 45
21273725 AGCGAAACAT
* *
21273735 ATATCATGCATATCGCATAGCATAATCAATCAAATAATATTTACC
1 ATATCATGCATATCGTATAGCATAATAAATCAAATAATATTTACC
** * *
21273780 ATATCATGCATATTATATAGCATAATTAATCAAATAATATTTGCC
1 ATATCATGCATATCGTATAGCATAATAAATCAAATAATATTTACC
* * * *
21273825 ATATCGTGCATATCTTATAGCACAATAAATCAAATACTTATTACTAAGCGAAATGC
1 ATATCATGCATATCGTATAGCATAATAAATCAAATA-ATATT--T-A-C------C
* *
21273881 ATATCATGCATATCGTATAGCATAATCAATCAAATAATATTTATC
1 ATATCATGCATATCGTATAGCATAATAAATCAAATAATATTTACC
* * *
21273926 ATATCGTGCATATTGTATAGCACAATAAATCAAATAATATTTACC
1 ATATCATGCATATCGTATAGCATAATAAATCAAATAATATTTACC
21273971 ATATCA
1 ATATCA
21273977 CTGATTTGAA
Statistics
Matches: 162, Mismatches: 24, Indels: 22
0.78 0.12 0.11
Matches are distributed among these distances:
45 117 0.72
46 4 0.02
48 1 0.01
50 1 0.01
52 1 0.01
53 1 0.01
55 4 0.02
56 33 0.20
ACGTcount: A:0.42, C:0.17, G:0.08, T:0.33
Consensus pattern (45 bp):
ATATCATGCATATCGTATAGCATAATAAATCAAATAATATTTACC
Found at i:21273912 original size:101 final size:101
Alignment explanation
Indices: 21273779--21273961 Score: 305
Period size: 101 Copynumber: 1.8 Consensus size: 101
21273769 TAATATTTAC
* * *
21273779 CATATCATGCATATTATATAGCATAATTAATCAAATAATATTTGCCATATCGTGCATATCT-TAT
1 CATATCATGCATATCATATAGCATAATCAATCAAATAATATTTACCATATCGTGCATAT-TGTAT
21273843 AGCACAATAAATCAAATACTTATTACTAAGCGAAATG
65 AGCACAATAAATCAAATACTTATTACTAAGCGAAATG
* *
21273880 CATATCATGCATATCGTATAGCATAATCAATCAAATAATATTTATCATATCGTGCATATTGTATA
1 CATATCATGCATATCATATAGCATAATCAATCAAATAATATTTACCATATCGTGCATATTGTATA
21273945 GCACAATAAATCAAATA
66 GCACAATAAATCAAATA
21273962 ATATTTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
100 1 0.01
101 75 0.99
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (101 bp):
CATATCATGCATATCATATAGCATAATCAATCAAATAATATTTACCATATCGTGCATATTGTATA
GCACAATAAATCAAATACTTATTACTAAGCGAAATG
Found at i:21274058 original size:33 final size:33
Alignment explanation
Indices: 21274020--21274095 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
21274010 TATATCGTAC
*
21274020 ATCATAGCATCAA-TCACAAGTTTATGTCATAAA
1 ATCATAGCATCAATTCACAAATTTATGTCAT-AA
* * *
21274053 ATCATA-AAACAATTCACAAATTTATGTCATCA
1 ATCATAGCATCAATTCACAAATTTATGTCATAA
21274085 ATCATAAGCAT
1 ATCAT-AGCAT
21274096 ATAGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
32 10 0.29
33 23 0.68
34 1 0.03
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.30
Consensus pattern (33 bp):
ATCATAGCATCAATTCACAAATTTATGTCATAA
Found at i:21274854 original size:30 final size:30
Alignment explanation
Indices: 21274780--21274854 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
21274770 TTTATTGCAA
21274780 TTTAATAAAATTGAGGGTATTTATCATAAT
1 TTTAATAAAATTGAGGGTATTTATCATAAT
* * * *
21274810 TTTACTAGAGTTGAGGGTATTTA-CTGTAAT
1 TTTAATAAAATTGAGGGTATTTATC-ATAAT
* *
21274840 TTTATTAAATTTGAG
1 TTTAATAAAATTGAG
21274855 AGCGTTACTA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
29 1 0.03
30 36 0.97
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.45
Consensus pattern (30 bp):
TTTAATAAAATTGAGGGTATTTATCATAAT
Found at i:21276949 original size:27 final size:26
Alignment explanation
Indices: 21276919--21276977 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 26
21276909 AAATCGTATG
*
21276919 AAAATTTAATTAATAAGAATAAGTAAAA
1 AAAATTTAA--AAAAAGAATAAGTAAAA
21276947 AAATATTTAAAAAAAGAATAAGTAAAA
1 AAA-ATTTAAAAAAAGAATAAGTAAAA
21276974 AAAA
1 AAAA
21276978 ATATCAATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 1 0.03
27 19 0.66
28 3 0.10
29 6 0.21
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (26 bp):
AAAATTTAAAAAAAGAATAAGTAAAA
Found at i:21276966 original size:15 final size:14
Alignment explanation
Indices: 21276943--21276981 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
21276933 AAGAATAAGT
*
21276943 AAAAAAATATTTAA
1 AAAAAAATATGTAA
*
21276957 AAAAAGAATAAGTAA
1 AAAAA-AATATGTAA
21276972 AAAAAAATAT
1 AAAAAAATAT
21276982 CAATCAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
14 9 0.43
15 12 0.57
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (14 bp):
AAAAAAATATGTAA
Found at i:21277970 original size:20 final size:21
Alignment explanation
Indices: 21277910--21277970 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 21
21277900 TAAAAATTGA
21277910 AATAAAATAGTTGTGATAATTAT
1 AATAAAA-A-TTGTGATAATTAT
* ** *
21277933 ATTTAAAAATAATTATAA-TAT
1 A-ATAAAAATTGTGATAATTAT
21277954 AATAAAAATTGTGATAA
1 AATAAAAATTGTGATAA
21277971 ATACATTTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 5
0.69 0.19 0.12
Matches are distributed among these distances:
20 12 0.41
21 4 0.14
22 6 0.21
23 2 0.07
24 5 0.17
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (21 bp):
AATAAAAATTGTGATAATTAT
Found at i:21280525 original size:30 final size:30
Alignment explanation
Indices: 21280465--21280627 Score: 135
Period size: 30 Copynumber: 5.6 Consensus size: 30
21280455 ATGGGGTCAA
* *
21280465 AAAATGAAATTTT-GAAGAA-TTTA-AGGTT
1 AAAATGTAATTTTAGAA-AATTTTAGGGGTT
*
21280493 AAAATATAATTTTA-AAAATTTTTAGGGGTT
1 AAAATGTAATTTTAGAAAA-TTTTAGGGGTT
* * * * *
21280523 AAAAT-AAAATTTAGAAGAGTTTAGGGGCT
1 AAAATGTAATTTTAGAAAATTTTAGGGGTT
* * * *
21280552 -AAATGTAATTTTAGAAGACTTTAAGGGCT
1 AAAATGTAATTTTAGAAAATTTTAGGGGTT
21280581 AAAATGTAATTTTAGAAAAGTTTTA-GGGTT
1 AAAATGTAATTTTAGAAAA-TTTTAGGGGTT
21280611 AAAATGTAATTTT-GAAA
1 AAAATGTAATTTTAGAAA
21280628 GAGTTAGAGG
Statistics
Matches: 112, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
27 2 0.02
28 17 0.15
29 43 0.38
30 46 0.41
31 4 0.04
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (30 bp):
AAAATGTAATTTTAGAAAATTTTAGGGGTT
Found at i:21281422 original size:6 final size:6
Alignment explanation
Indices: 21281413--21281441 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
21281403 GTAAATATGC
21281413 GTATAT GTATAT GTATAT GTATAT GTATA
1 GTATAT GTATAT GTATAT GTATAT GTATA
21281442 GATAGACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (6 bp):
GTATAT
Found at i:21281672 original size:15 final size:15
Alignment explanation
Indices: 21281650--21281693 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
21281640 TTTGCAGGTG
21281650 GCAA-TGGCGGTGGT
1 GCAAGTGGCGGTGGT
21281664 GCAAGTGGCGGTGGT
1 GCAAGTGGCGGTGGT
*
21281679 GCAAGTGGTGGTGGT
1 GCAAGTGGCGGTGGT
21281694 AGCTGCTGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.14, C:0.11, G:0.52, T:0.23
Consensus pattern (15 bp):
GCAAGTGGCGGTGGT
Found at i:21283891 original size:22 final size:22
Alignment explanation
Indices: 21283863--21283928 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
21283853 GAAATAGAAG
*
21283863 CACACAGTGTTGAACAGAAGCA
1 CACACAGTGCTGAACAGAAGCA
21283885 CACACAGTGCT-AATCAGAAGCA
1 CACACAGTGCTGAA-CAGAAGCA
21283907 CACACAGTGCTGAACAGTAAGC
1 CACACAGTGCTGAACAG-AAGC
21283929 GTGCTAACGT
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
21 2 0.05
22 32 0.80
23 6 0.15
ACGTcount: A:0.39, C:0.26, G:0.21, T:0.14
Consensus pattern (22 bp):
CACACAGTGCTGAACAGAAGCA
Found at i:21289455 original size:35 final size:35
Alignment explanation
Indices: 21289380--21289464 Score: 116
Period size: 35 Copynumber: 2.4 Consensus size: 35
21289370 GTGATGGAAG
* * *
21289380 AAGAAGAAGCCACGGTTTGATTCAAAATCCAAATG
1 AAGAAGAAGCCATGGCTTGATTCAAAATCCAAATA
* *
21289415 GAGAAGAAGCCATGGCTTGATTCAAAATCCAAGTA
1 AAGAAGAAGCCATGGCTTGATTCAAAATCCAAATA
*
21289450 AAGAAGTAGCCATGG
1 AAGAAGAAGCCATGG
21289465 TTAAAATAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (35 bp):
AAGAAGAAGCCATGGCTTGATTCAAAATCCAAATA
Found at i:21289732 original size:30 final size:31
Alignment explanation
Indices: 21289698--21289789 Score: 116
Period size: 30 Copynumber: 3.0 Consensus size: 31
21289688 AAATTAAAAA
*
21289698 TTAAAATTA-TTTAATAATTTTAAATTTATT
1 TTAAAATAATTTTAATAATTTTAAATTTATT
* * *
21289728 TTAAAATAATTTTAAAAATTTTATATTT-TA
1 TTAAAATAATTTTAATAATTTTAAATTTATT
**
21289758 AAAAAATAATTTTAATAATTTTAAATTTATT
1 TTAAAATAATTTTAATAATTTTAAATTTATT
21289789 T
1 T
21289790 GCTGACGTGG
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
30 33 0.66
31 17 0.34
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (31 bp):
TTAAAATAATTTTAATAATTTTAAATTTATT
Found at i:21289746 original size:12 final size:11
Alignment explanation
Indices: 21289710--21289744 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
21289700 AAAATTATTT
21289710 AATAATTTTAA
1 AATAATTTTAA
* *
21289721 ATTTATTTTAA
1 AATAATTTTAA
21289732 AATAATTTTAA
1 AATAATTTTAA
21289743 AA
1 AA
21289745 ATTTTATATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
AATAATTTTAA
Found at i:21289749 original size:9 final size:10
Alignment explanation
Indices: 21289710--21289783 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 10
21289700 AAAATTATTT
21289710 AATAATTTTA
1 AATAATTTTA
*
21289720 AATTTATTTTAA
1 AA-TAATTTT-A
21289732 AATAATTTTA
1 AATAATTTTA
21289742 AA-AATTTT-
1 AATAATTTTA
21289750 -AT-ATTTTAAAAA
1 AATAATTTT----A
21289762 AATAATTTT-
1 AATAATTTTA
21289771 AATAATTTTA
1 AATAATTTTA
21289781 AAT
1 AAT
21289784 TTATTTGCTG
Statistics
Matches: 51, Mismatches: 2, Indels: 22
0.68 0.03 0.29
Matches are distributed among these distances:
7 6 0.12
9 15 0.29
10 8 0.16
11 12 0.24
12 3 0.06
13 2 0.04
14 5 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
AATAATTTTA
Found at i:21295436 original size:33 final size:31
Alignment explanation
Indices: 21295378--21295457 Score: 97
Period size: 33 Copynumber: 2.5 Consensus size: 31
21295368 ACTTTACTTG
*
21295378 TTCTGTGTTTACTATCCCAAAGGACTTTCTCTA
1 TTCTGTGTTTACTATCCCAAAGGAC--TATCTA
* **
21295411 TTCTATGTTTACTATCCCATCGGACTATCTA
1 TTCTGTGTTTACTATCCCAAAGGACTATCTA
*
21295442 TTATGTGTTTACTATC
1 TTCTGTGTTTACTATC
21295458 AAAGTCAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 19 0.46
33 22 0.54
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45
Consensus pattern (31 bp):
TTCTGTGTTTACTATCCCAAAGGACTATCTA
Found at i:21295451 original size:31 final size:32
Alignment explanation
Indices: 21295381--21295457 Score: 93
Period size: 31 Copynumber: 2.4 Consensus size: 32
21295371 TTACTTGTTC
* *
21295381 TGTGTTTACTATCCCAAAGGACTTTCTCTATTC
1 TGTGTTTACTATCCCAAAGGAC-TTATCTATTA
* **
21295414 TATGTTTACTATCCCATCGGAC-TATCTATTA
1 TGTGTTTACTATCCCAAAGGACTTATCTATTA
21295445 TGTGTTTACTATC
1 TGTGTTTACTATC
21295458 AAAGTCAGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 19 0.50
33 19 0.50
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (32 bp):
TGTGTTTACTATCCCAAAGGACTTATCTATTA
Found at i:21299193 original size:29 final size:27
Alignment explanation
Indices: 21299128--21299193 Score: 62
Period size: 31 Copynumber: 2.3 Consensus size: 27
21299118 AGTTTTATGT
*
21299128 GTATAATTGCATCAAAATAAAGTTCAT
1 GTATAATTGCATCAAAATAAAGTTCAG
*
21299155 GTATAAAATTGCA-CATTAAATTAAAGTTTAG
1 GTAT--AATTGCATCA--AAA-TAAAGTTCAG
21299186 GTATAATT
1 GTATAATT
21299194 TTGATATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
27 4 0.12
28 2 0.06
29 11 0.34
30 3 0.09
31 12 0.38
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (27 bp):
GTATAATTGCATCAAAATAAAGTTCAG
Found at i:21312073 original size:23 final size:24
Alignment explanation
Indices: 21312047--21312093 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
21312037 TAAAGCATAT
* *
21312047 AAGTACTTCATAT-ATTAATATTA
1 AAGTACTTAATATAATTAAGATTA
*
21312070 AAGTATTTAATATAATTAAGATTA
1 AAGTACTTAATATAATTAAGATTA
21312094 TATAAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (24 bp):
AAGTACTTAATATAATTAAGATTA
Found at i:21314699 original size:4 final size:4
Alignment explanation
Indices: 21314686--21314864 Score: 126
Period size: 4 Copynumber: 44.0 Consensus size: 4
21314676 TCATTCATAC
* * * *
21314686 AATA ACTA AATA AATA ACTG AATA AA-A AATA AATAA AATA AATA ACTA
1 AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA AATA
* * * * * *
21314734 AATA AATA AATA AATA ATTA ATTA ATTA ATTA ACTA ACTA AATAA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AATA
* * * * * * * * *
21314783 ACTA ACTA ACTA ACTA ACTA AATA AATA TATA AATA ATTA ACTA ATTA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
* *
21314831 AATAA AACA AATA ACTA AATA AATAA AATA AATA
1 AAT-A AATA AATA AATA AATA AAT-A AATA AATA
21314865 TTTTTAAATT
Statistics
Matches: 147, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
3 3 0.02
4 129 0.88
5 15 0.10
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:21314776 original size:57 final size:57
Alignment explanation
Indices: 21314715--21314864 Score: 203
Period size: 57 Copynumber: 2.6 Consensus size: 57
21314705 GAATAAAAAA
* *
21314715 TAAATAAAATAAATAACTAAATAAATAAATAAATAATTA-ATTAATTAATTAACTAAC
1 TAAATAAAATAAATAACTAAATAAATAAATAAATAAATATA-TAAATAATTAACTAAC
* * * * *
21314772 TAAATAAAATAACTAACTAACTAACTAACTAAATAAATATATAAATAATTAACTAAT
1 TAAATAAAATAAATAACTAAATAAATAAATAAATAAATATATAAATAATTAACTAAC
*
21314829 TAAATAAAACAAATAACTAAATAAATAAAATAAATA
1 TAAATAAAATAAATAACTAAATAAAT-AAATAAATA
21314865 TTTTTAAATT
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 70 0.89
58 9 0.11
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (57 bp):
TAAATAAAATAAATAACTAAATAAATAAATAAATAAATATATAAATAATTAACTAAC
Found at i:21314848 original size:21 final size:21
Alignment explanation
Indices: 21314686--21314743 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
21314676 TCATTCATAC
*
21314686 AATAACTAAATAAAT--AACTG
1 AATAACTAAATAAATAAAAC-A
* *
21314706 AATAA-AAAATAAATAAAATA
1 AATAACTAAATAAATAAAACA
21314726 AATAACTAAATAAATAAA
1 AATAACTAAATAAATAAA
21314744 TAAATAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 8 0.26
20 10 0.32
21 13 0.42
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (21 bp):
AATAACTAAATAAATAAAACA
Found at i:21315880 original size:6 final size:6
Alignment explanation
Indices: 21315858--21315913 Score: 69
Period size: 6 Copynumber: 9.5 Consensus size: 6
21315848 GTTTAAATTG
* * * *
21315858 ATTTAA ATTTAT TTTTAA ATTTAA ATTTAA ATTTAA GTTT-A ATTAAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
21315905 ATTTAA ATT
1 ATTTAA ATT
21315914 GATATTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 3 0.07
6 38 0.93
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (6 bp):
ATTTAA
Found at i:21315906 original size:17 final size:18
Alignment explanation
Indices: 21315871--21315923 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
21315861 TAAATTTATT
*
21315871 TTTAAATTTAAATTTAAA
1 TTTAAATTTAAATTAAAA
*
21315889 TTTAAGTTT-AATTAAAA
1 TTTAAATTTAAATTAAAA
* *
21315906 TTTAAATTGATATTAAAA
1 TTTAAATTTAAATTAAAA
21315924 ACCCAAAAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (18 bp):
TTTAAATTTAAATTAAAA
Found at i:21315922 original size:18 final size:17
Alignment explanation
Indices: 21315871--21315923 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
21315861 TAAATTTATT
*
21315871 TTTAAATTTAAATTTAAA
1 TTTAAATTT-AATTAAAA
*
21315889 TTTAAGTTTAATTAAAA
1 TTTAAATTTAATTAAAA
*
21315906 TTTAAATTGATATTAAAA
1 TTTAAATTTA-ATTAAAA
21315924 ACCCAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (17 bp):
TTTAAATTTAATTAAAA
Found at i:21316605 original size:28 final size:27
Alignment explanation
Indices: 21316539--21316607 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 27
21316529 TCGAAAATGC
* *
21316539 AATAAATATATATATTAAATATTTTAAT
1 AATAAATATA-ATAATAAATAGTTTAAT
* *
21316567 AAT-GATAATAATAATAAATGGGTTTAAT
1 AATAAAT-ATAATAATAAAT-AGTTTAAT
21316595 AATAAATATAATA
1 AATAAATATAATA
21316608 TTTATAGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
27 10 0.30
28 21 0.64
29 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (27 bp):
AATAAATATAATAATAAATAGTTTAAT
Found at i:21317784 original size:59 final size:59
Alignment explanation
Indices: 21317701--21318001 Score: 310
Period size: 59 Copynumber: 5.1 Consensus size: 59
21317691 AAAAATTAAA
* * *
21317701 TTTTGACCCTGAAACTTCTAAAAATTACATTTTTACCCTCGAACTTTCAAAAATTACAT
1 TTTTGACCCCGAAACTTCCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATTCCAT
* * *
21317760 TTTTAACCCCGAAACTTCCAAAAATTATATTTTTACCCTCGAACTTCCAAAAATTCCAT
1 TTTTGACCCCGAAACTTCCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATTCCAT
* *
21317819 TTTTG-CCCGCGAAATTTCCAAAAAATACATTTTTAGCCC-CGAAC-TTCTAAAAATTCCAT
1 TTTTGACCC-CGAAACTTCCAAAAATTACATTTTTA-CCCTCGAACTTTC-AAAAATTCCAT
* * * * * * * * *
21317878 TTTTGGCCTCAAAACTTGCAAAAATTACCA-TTTTACCC-CTAAATGTCTAAAAACTCTAT
1 TTTTGACCCCGAAACTTCCAAAAATTA-CATTTTTACCCTCGAACTTTC-AAAAATTCCAT
* * *
21317937 TTTTTACCCCGAAACTTTCAAAAATTACCA-TTTTACCCTCGAA-TGTCCAAAAATTCCAT
1 TTTTGACCCCGAAACTTCCAAAAATTA-CATTTTTACCCTCGAACT-TTCAAAAATTCCAT
21317996 TTTTGA
1 TTTTGA
21318002 TCCCTATTTT
Statistics
Matches: 202, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
58 11 0.05
59 180 0.89
60 11 0.05
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.35
Consensus pattern (59 bp):
TTTTGACCCCGAAACTTCCAAAAATTACATTTTTACCCTCGAACTTTCAAAAATTCCAT
Found at i:21317999 original size:29 final size:29
Alignment explanation
Indices: 21317688--21317999 Score: 235
Period size: 29 Copynumber: 10.6 Consensus size: 29
21317678 CCCTAAATTG
** *
21317688 TCCAAAAATTAAATTTTGACCCT-GAAACT
1 TCCAAAAATTCCATTTTTACCCTCG-AACT
* *
21317717 TCTAAAAATTACATTTTTACCCTCGAACT
1 TCCAAAAATTCCATTTTTACCCTCGAACT
* *
21317746 TTCAAAAATTACATTTTTAACCC-CGAAACT
1 TCCAAAAATTCCATTTTT-ACCCTCG-AACT
**
21317776 TCCAAAAATTATATTTTTACCCTCGAACT
1 TCCAAAAATTCCATTTTTACCCTCGAACT
* * *
21317805 TCCAAAAATTCCATTTTTGCCCGCGAAATT
1 TCCAAAAATTCCATTTTTACCCTCG-AACT
* *
21317835 TCCAAAAAATACATTTTTAGCCC-CGAACT
1 TCCAAAAATTCCATTTTTA-CCCTCGAACT
* ** *
21317864 TCTAAAAATTCCATTTTTGGCCTCAAAACT
1 TCCAAAAATTCCATTTTTACCCTC-GAACT
* * *
21317894 TGCAAAAATTACCA-TTTTACCC-CTAAAT
1 TCCAAAAATT-CCATTTTTACCCTCGAACT
* * *
21317922 GTCTAAAAACTCTATTTTTTACCC-CGAAACT
1 -TCCAAAAATTCCA-TTTTTACCCTCG-AACT
*
21317953 TTCAAAAATTACCA-TTTTACCCTCGAA-T
1 TCCAAAAATT-CCATTTTTACCCTCGAACT
21317981 GTCCAAAAATTCCATTTTT
1 -TCCAAAAATTCCATTTTT
21318000 GATCCCTATT
Statistics
Matches: 227, Mismatches: 39, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
28 11 0.05
29 121 0.53
30 84 0.37
31 11 0.05
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (29 bp):
TCCAAAAATTCCATTTTTACCCTCGAACT
Found at i:21318019 original size:59 final size:58
Alignment explanation
Indices: 21317688--21318034 Score: 269
Period size: 59 Copynumber: 5.9 Consensus size: 58
21317678 CCCTAAATTG
* * ** *
21317688 TCCAAAAATT-AAATTTTGACCCTGAAACTTCTAAAAATTACATTTTTACCCTCGAACT
1 TCCAAAAATTCCATTTTTGACCCCAAAATTTC-AAAAATTACATTTTTACCCTCGAACT
* * * * * *
21317746 TTCAAAAATTACATTTTTAACCCCGAAACTTCCAAAAATTATATTTTTACCCTCGAACT
1 TCCAAAAATTCCATTTTTGACCCC-AAAATTTCAAAAATTACATTTTTACCCTCGAACT
* *
21317805 TCCAAAAATTCCATTTTTG-CCCGCGAAATTTCCAAAAAATACATTTTTAGCCC-CGAACT
1 TCCAAAAATTCCATTTTTGACCC-CAAAATTT-CAAAAATTACATTTTTA-CCCTCGAACT
* * * * * *
21317864 TCTAAAAATTCCATTTTTGGCCTCAAAACTTGCAAAAATTACCA-TTTTACCC-CTAAAT
1 TCCAAAAATTCCATTTTTGACCCCAAAA-TTTCAAAAATTA-CATTTTTACCCTCGAACT
* * * * *
21317922 GTCTAAAAACTCTATTTTTTACCCCGAAACTTTCAAAAATTACCA-TTTTACCCTCGAA-T
1 -TCCAAAAATTCCATTTTTGACCCC-AAAATTTCAAAAATTA-CATTTTTACCCTCGAACT
* * **
21317981 GTCCAAAAATTCCATTTTTGATCCCTATTTTTCTAAAAATTAC-TGTTTTACCCT
1 -TCCAAAAATTCCATTTTTGACCCCAAAATTTC-AAAAATTACAT-TTTTACCCT
21318035 TGGATGTCTA
Statistics
Matches: 234, Mismatches: 41, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
58 29 0.12
59 186 0.79
60 19 0.08
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (58 bp):
TCCAAAAATTCCATTTTTGACCCCAAAATTTCAAAAATTACATTTTTACCCTCGAACT
Found at i:21318128 original size:27 final size:28
Alignment explanation
Indices: 21318070--21318130 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
21318060 TCTAAATTTT
* **
21318070 TCCAAAATTACCATTTTTCCCTTGACAG
1 TCCAAAATTACCATTTTGCCCCAGACAG
* *
21318098 TCCAAAATTATCATTTTGCCCCAGGCA-
1 TCCAAAATTACCATTTTGCCCCAGACAG
21318125 TCCAAA
1 TCCAAA
21318131 GTCTCATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 6 0.21
28 22 0.79
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (28 bp):
TCCAAAATTACCATTTTGCCCCAGACAG
Found at i:21320298 original size:21 final size:21
Alignment explanation
Indices: 21320274--21320318 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
21320264 CCTGTGAACT
21320274 TGCGAAATGCAAAAAATAACA
1 TGCGAAATGCAAAAAATAACA
21320295 TGCGAAATGCAAAAAATAACA
1 TGCGAAATGCAAAAAATAACA
21320316 TGC
1 TGC
21320319 AATCCACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16
Consensus pattern (21 bp):
TGCGAAATGCAAAAAATAACA
Found at i:21321062 original size:80 final size:79
Alignment explanation
Indices: 21320882--21321102 Score: 280
Period size: 80 Copynumber: 2.7 Consensus size: 79
21320872 CAATATACGG
* * * * * **
21320882 TGCTGCTCATACAAGCTGTTAAGAATTCGCAACATATGTCGAACCTTAGCCATCGATACAGTCCA
1 TGCTGCTCACACAAGCTGTCAAGAATTCGCAACATATG-CGGATCTTAGCCATCG-GAGGGTCCA
*
21320947 TTTTATCCACTCACGA
64 CTTTATCCACTCACGA
* * *
21320963 TGCAGCTCACACAAGCTGTCAAGAATACGCAACATATGCGGGATCTTAGCCATCGGAGGGTTCAC
1 TGCTGCTCACACAAGCTGTCAAGAATTCGCAACATATGC-GGATCTTAGCCATCGGAGGGTCCAC
*
21321028 TTTATCCACTCATGA
65 TTTATCCACTCACGA
* *
21321043 TGCTGCTCACACAAGCTGTCAAGAATTCGCAACATATGCAGGATCTTGGCTATCGGAGGG
1 TGCTGCTCACACAAGCTGTCAAGAATTCGCAACATATGC-GGATCTTAGCCATCGGAGGG
21321103 CCGTTACATC
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 75 0.61
81 47 0.39
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (79 bp):
TGCTGCTCACACAAGCTGTCAAGAATTCGCAACATATGCGGATCTTAGCCATCGGAGGGTCCACT
TTATCCACTCACGA
Found at i:21322915 original size:25 final size:25
Alignment explanation
Indices: 21322887--21322935 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
21322877 GCTCCTTTGG
*
21322887 TCCTTTT-TCATTTGTTTTAATTTAA
1 TCCTTTTGTCATAT-TTTTAATTTAA
*
21322912 TCCTTTTGTCCTATTTTTAATTTA
1 TCCTTTTGTCATATTTTTAATTTA
21322936 TTTCAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.18, C:0.14, G:0.04, T:0.63
Consensus pattern (25 bp):
TCCTTTTGTCATATTTTTAATTTAA
Found at i:21323116 original size:30 final size:30
Alignment explanation
Indices: 21323069--21323250 Score: 183
Period size: 30 Copynumber: 6.1 Consensus size: 30
21323059 TTATTTTTTA
*
21323069 ACCCCCAAACTAT-CCAAAAATTTAGATTTG
1 ACCCTCAAACT-TCCCAAAAATTTAGATTTG
* * * *
21323099 ACCCTCGAACTTCCCAAAAATTCAAAATTG
1 ACCCTCAAACTTCCCAAAAATTTAGATTTG
21323129 ACCC-CTAAACTTCCCAAAAA-TTAGGATTTG
1 ACCCTC-AAACTTCCCAAAAATTTA-GATTTG
* *
21323159 ACCCTTAAACTTTCCAAAAATTTAGATTTG
1 ACCCTCAAACTTCCCAAAAATTTAGATTTG
* * *
21323189 ACCCTCAAACTTCCTAAAAATTCAAATTTG
1 ACCCTCAAACTTCCCAAAAATTTAGATTTG
* * * *
21323219 GCCCTCAAACTTTCC-AAAATTTCGTTTTG
1 ACCCTCAAACTTCCCAAAAATTTAGATTTG
21323248 ACC
1 ACC
21323251 TTGTGTTTCC
Statistics
Matches: 123, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
29 16 0.13
30 104 0.85
31 3 0.02
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (30 bp):
ACCCTCAAACTTCCCAAAAATTTAGATTTG
Found at i:21325552 original size:370 final size:370
Alignment explanation
Indices: 21324871--21325612 Score: 1466
Period size: 370 Copynumber: 2.0 Consensus size: 370
21324861 ATTTATCAGA
21324871 ATTTTAGGATCATACTCGGATTAAGGTGACTCAAAATAGTTTGCAAGAGTTGAGAGACATTTGAG
1 ATTTTAGGATCATACTCGGATTAAGGTGACTCAAAATAGTTTGCAAGAGTTGAGAGACATTTGAG
21324936 GTCAGTGGGATAATGAGACGAAGCAGATGTTTTATAGGAAATACGGAGACCTACCCTACTTACTC
66 GTCAGTGGGATAATGAGACGAAGCAGATGTTTTATAGGAAATACGGAGACCTACCCTACTTACTC
21325001 GAGGTGAAGGTAGACAAACACCTCTTTCGAGCTCTCACCCAACATTGGAATCCTGCATATAGCTA
131 GAGGTGAAGGTAGACAAACACCTCTTTCGAGCTCTCACCCAACATTGGAATCCTGCATATAGCTA
21325066 TTTCACCTTTGGAAACTTCGACAAGACGCCTACAGTAGAAGAATACACCACATTGATTCGTTGCC
196 TTTCACCTTTGGAAACTTCGACAAGACGCCTACAGTAGAAGAATACACCACATTGATTCGTTGCC
21325131 CAAGGGCTCAAGTTGACAAGGCATACTCAAAAGATGCATGTGTCCCAACCTTTTTGAAAAGATTG
261 CAAGGGCTCAAGTTGACAAGGCATACTCAAAAGATGCATGTGTCCCAACCTTTTTGAAAAGATTG
21325196 ATGAACATAACTGGAATGAGTGAACAATGGGTTTCATCTTGGCAT
326 ATGAACATAACTGGAATGAGTGAACAATGGGTTTCATCTTGGCAT
21325241 ATTTTAGGATCATACTCGGATTAAGGTGACTCAAAATAGTTTGCAAGAGTTGAGAGACATTTGAG
1 ATTTTAGGATCATACTCGGATTAAGGTGACTCAAAATAGTTTGCAAGAGTTGAGAGACATTTGAG
21325306 GTCAGTGGGATAATGAGACGAAGCAGATGTTTTATAGGAAATACGGAGACCTACCCTACTTACTC
66 GTCAGTGGGATAATGAGACGAAGCAGATGTTTTATAGGAAATACGGAGACCTACCCTACTTACTC
21325371 GAGGTGAAGGTAGACAAACACCTCTTTCGAGCTCTCACCCAACATTGGAATCCTGCATATAGCTA
131 GAGGTGAAGGTAGACAAACACCTCTTTCGAGCTCTCACCCAACATTGGAATCCTGCATATAGCTA
* *
21325436 TTTCACCTTTGGAAACTTCGACAAGACGCCTACAGTGGAAGAATATACCACATTGATTCGTTGCC
196 TTTCACCTTTGGAAACTTCGACAAGACGCCTACAGTAGAAGAATACACCACATTGATTCGTTGCC
21325501 CAAGGGCTCAAGTTGACAAGGCATACTCAAAAGATGCATGTGTCCCAACCTTTTTGAAAAGATTG
261 CAAGGGCTCAAGTTGACAAGGCATACTCAAAAGATGCATGTGTCCCAACCTTTTTGAAAAGATTG
21325566 ATGAACATAACTGGAATGAGTGAACAATGGGTTTCATCTTGGCAT
326 ATGAACATAACTGGAATGAGTGAACAATGGGTTTCATCTTGGCAT
21325611 AT
1 AT
21325613 ACGGGTTAGT
Statistics
Matches: 370, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
370 370 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (370 bp):
ATTTTAGGATCATACTCGGATTAAGGTGACTCAAAATAGTTTGCAAGAGTTGAGAGACATTTGAG
GTCAGTGGGATAATGAGACGAAGCAGATGTTTTATAGGAAATACGGAGACCTACCCTACTTACTC
GAGGTGAAGGTAGACAAACACCTCTTTCGAGCTCTCACCCAACATTGGAATCCTGCATATAGCTA
TTTCACCTTTGGAAACTTCGACAAGACGCCTACAGTAGAAGAATACACCACATTGATTCGTTGCC
CAAGGGCTCAAGTTGACAAGGCATACTCAAAAGATGCATGTGTCCCAACCTTTTTGAAAAGATTG
ATGAACATAACTGGAATGAGTGAACAATGGGTTTCATCTTGGCAT
Found at i:21329657 original size:174 final size:174
Alignment explanation
Indices: 21329367--21329716 Score: 655
Period size: 174 Copynumber: 2.0 Consensus size: 174
21329357 CAATGTTTGC
* *
21329367 AACTCTTTCCTTTGAATTTTTTCCTCAATAAAATTTGACCTTATTCTTTCACAACCTTGTTCAAG
1 AACTCTTTCCTTTGAATTTTGTCCTCAATAAAATTTGACCTTATTATTTCACAACCTTGTTCAAG
21329432 CATTTTGCATTAAAAATGGACTAATAATATAAAGCATACAAGGACCCATGAGTATCGCTCTGAAA
66 CATTTTGCATTAAAAATGGACTAATAATATAAAGCATACAAGGACCCATGAGTATCGCTCTGAAA
*
21329497 AATTTCTAAATAGTATAGGGACTTGAAACAGGACCACTAGTTGG
131 AATTTCTAAATAGTATAGGGACTTGAAACAGGACCACTAGCTGG
*
21329541 AACTCTTTCCTTTGAATTTTGTCCTCAATAAAATTTGACCTTATTATTTTACAACCTTGTTCAAG
1 AACTCTTTCCTTTGAATTTTGTCCTCAATAAAATTTGACCTTATTATTTCACAACCTTGTTCAAG
*
21329606 CATTTTGCATTAGAAATGGACTAATAATATAAAGCATACAAGGACCCATGAGTATCGCTCTGAAA
66 CATTTTGCATTAAAAATGGACTAATAATATAAAGCATACAAGGACCCATGAGTATCGCTCTGAAA
21329671 AATTTCTAAATAGTATAGGGACTTGAAACAGGACCACTAGCTGG
131 AATTTCTAAATAGTATAGGGACTTGAAACAGGACCACTAGCTGG
21329715 AA
1 AA
21329717 ATAACCGACT
Statistics
Matches: 171, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 171 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (174 bp):
AACTCTTTCCTTTGAATTTTGTCCTCAATAAAATTTGACCTTATTATTTCACAACCTTGTTCAAG
CATTTTGCATTAAAAATGGACTAATAATATAAAGCATACAAGGACCCATGAGTATCGCTCTGAAA
AATTTCTAAATAGTATAGGGACTTGAAACAGGACCACTAGCTGG
Found at i:21330247 original size:98 final size:98
Alignment explanation
Indices: 21330138--21330353 Score: 238
Period size: 98 Copynumber: 2.2 Consensus size: 98
21330128 TTGTAATGGC
* * * * * *
21330138 GAATCTTATACCTTAGAGATG-TGATCGGAAAGGTTG-AAGCCGCAATGACAAACCTTATACCTT
1 GAATCTTATACCCTAAAGATGAAGA-CGGAAAGG-TGAAAGCCACAACGACAAACCTTATACCCT
*
21330201 AGTGACGTGAAAGGAAAGATTGAAGCCGCAATGAT
64 AGAGACGTGAAAGGAAAGATTGAAGCCGCAATGAT
* * *
21330236 GAATCTTATACCCTAAAGATGAAGAGGGAAAGGTGAAAGCCACAACGGCGAACCTTATACCCTAG
1 GAATCTTATACCCTAAAGATGAAGACGGAAAGGTGAAAGCCACAACGACAAACCTTATACCCTAG
* * * *** *
21330301 AGATGTGAAGGGAAATATTGAATTTGCAATGGT
66 AGACGTGAAAGGAAAGATTGAAGCCGCAATGAT
*
21330334 GAATCTTATACCCTGAAGAT
1 GAATCTTATACCCTAAAGAT
21330354 ATAGAGAAGA
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
97 2 0.02
98 94 0.96
99 2 0.02
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (98 bp):
GAATCTTATACCCTAAAGATGAAGACGGAAAGGTGAAAGCCACAACGACAAACCTTATACCCTAG
AGACGTGAAAGGAAAGATTGAAGCCGCAATGAT
Found at i:21330342 original size:49 final size:49
Alignment explanation
Indices: 21330068--21330347 Score: 188
Period size: 49 Copynumber: 5.7 Consensus size: 49
21330058 ACGAGATGGA
* * * * * * *
21330068 AAAGATAGAAGTCGCAATGGTGAATCTTGTACCATAG-GAATGTAAAGGA
1 AAAGATTGAAGCCGCAATGGCGAATCTTATACCCTAGAG-ATGTGAAGGG
* * ** * * **
21330117 AAATATTAAAGTTGTAATGGCGAATCTTATACCTTAGAGATGTGATCGG
1 AAAGATTGAAGCCGCAATGGCGAATCTTATACCCTAGAGATGTGAAGGG
* * * * * * * *
21330166 AAAGGTTGAAGCCGCAATGACAAACCTTATACCTTAGTGACGTGAAAGG
1 AAAGATTGAAGCCGCAATGGCGAATCTTATACCCTAGAGATGTGAAGGG
** * *
21330215 AAAGATTGAAGCCGCAATGATGAATCTTATACCCTAAAGATG-AAGAGGG
1 AAAGATTGAAGCCGCAATGGCGAATCTTATACCCTAGAGATGTGA-AGGG
* * * *
21330264 AAAG-GTGAAAGCCACAACGGCGAACCTTATACCCTAGAGATGTGAAGGG
1 AAAGATTG-AAGCCGCAATGGCGAATCTTATACCCTAGAGATGTGAAGGG
* *** *
21330313 AAATATTGAATTTGCAATGGTGAATCTTATACCCT
1 AAAGATTGAAGCCGCAATGGCGAATCTTATACCCT
21330348 GAAGATATAG
Statistics
Matches: 174, Mismatches: 52, Indels: 10
0.74 0.22 0.04
Matches are distributed among these distances:
48 3 0.02
49 167 0.96
50 4 0.02
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (49 bp):
AAAGATTGAAGCCGCAATGGCGAATCTTATACCCTAGAGATGTGAAGGG
Found at i:21330688 original size:45 final size:44
Alignment explanation
Indices: 21330639--21331148 Score: 261
Period size: 45 Copynumber: 11.8 Consensus size: 44
21330629 CATGGAGCAG
* *
21330639 ATTGAAGCCATCATCCAATCTCTTACCCCTAGTCAAGAGGGGTAA
1 ATTGAAGCCATC-TCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * * * * ** *
21330684 ATTGAAGTCATCTTCCAGTCTTTTATCCCTAATCCAGACAGGTAA
1 ATTGAAGCCATC-TCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* *
21330729 GTTGAAGCCAT-TCCAAT-TTTTACCCC---T--A-A---GCAG
1 ATTGAAGCCATCTCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * * *
21330762 ATTAAATCC-T-TCCAATCTTTTACCCCTAGTTACGAGGGGCAA
1 ATTGAAGCCATCTCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * * *
21330804 ATAGAAGCCATCTTCCAATCTTTTA-CCCTAGTCAAGAGAGACAG
1 ATTGAAGCCATC-TCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * * * **
21330848 ATTGAAGTCACCGTCTAACCTTTTACCCCTAACCTAA-AGGGGCAA
1 ATTGAAGCCATC-TCCAATCTTTTACCCCTAGTC-AAGAGGGGCAA
* * ** *
21330893 GTTGAAGCCAT-TCCAAACTTTTACCCCTAACCTAA-AGGGGCAG
1 ATTGAAGCCATCTCCAATCTTTTACCCCTAGTC-AAGAGGGGCAA
* * * * *
21330936 GTTGAAGCCAT-TCCAAACTTTTACCCCTAGTTAAGAGAGGCAG
1 ATTGAAGCCATCTCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
** * * * **
21330979 ATTGAAGTTACTGTCCAATCTTTTACCCCTAATCAGGAGGGGCGG
1 ATTGAAGCCA-TCTCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * *
21331024 ATTGAAGCCATCATCTAATCTTTTACCCCTCAGTCAA-A-AGGCAG
1 ATTGAAGCCATC-TCCAATCTTTTACCCCT-AGTCAAGAGGGGCAA
* * * * * * *
21331068 ACTGAAGCCATCATCTAATCTTTTACCCCTA-ACAAAAGGTGTAT
1 ATTGAAGCCATC-TCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
* * *
21331112 ACTGAAGCAATCATCCAATCTTTTACCTCTAAGTCAA
1 ATTGAAGCCATC-TCCAATCTTTTACCCCT-AGTCAA
21331149 AAGCGTCATA
Statistics
Matches: 365, Mismatches: 76, Indels: 47
0.75 0.16 0.10
Matches are distributed among these distances:
32 7 0.02
33 17 0.05
36 2 0.01
37 1 0.00
39 2 0.01
42 22 0.06
43 80 0.22
44 97 0.27
45 128 0.35
46 9 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
ATTGAAGCCATCTCCAATCTTTTACCCCTAGTCAAGAGGGGCAA
Found at i:21330920 original size:43 final size:43
Alignment explanation
Indices: 21330867--21330964 Score: 187
Period size: 43 Copynumber: 2.3 Consensus size: 43
21330857 ACCGTCTAAC
21330867 CTTTTACCCCTAACCTAAAGGGGCAAGTTGAAGCCATTCCAAA
1 CTTTTACCCCTAACCTAAAGGGGCAAGTTGAAGCCATTCCAAA
*
21330910 CTTTTACCCCTAACCTAAAGGGGCAGGTTGAAGCCATTCCAAA
1 CTTTTACCCCTAACCTAAAGGGGCAAGTTGAAGCCATTCCAAA
21330953 CTTTTACCCCTA
1 CTTTTACCCCTA
21330965 GTTAAGAGAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (43 bp):
CTTTTACCCCTAACCTAAAGGGGCAAGTTGAAGCCATTCCAAA
Found at i:21331020 original size:131 final size:132
Alignment explanation
Indices: 21330807--21331053 Score: 313
Period size: 131 Copynumber: 1.9 Consensus size: 132
21330797 GGGGCAAATA
* *
21330807 GAAGCCATCTTCCAATCTTTTACCCTAGTCAAGAGAGACAGATTGAAGTCACCGTCTAACCTTTT
1 GAAGCCA-CTTCCAAACTTTTACCCTAGTCAAGAGAGACAGATTGAAGTCACCGTCCAACCTTTT
21330872 ACCCCTAACCTAAAGGGGCA-AGTTGAAGCCAT-TCCAAACTTTTACCCCTAACCTAAAGGGGCA
65 ACCCCTAACCTAAAGGGGCAGA-TTGAAGCCATATCCAAACTTTTACCCCTAACCTAAAGGGGCA
21330935 GGTT
129 GGTT
* * * * *
21330939 GAAGCCA-TTCCAAACTTTTACCCCTAGTTAAGAGAGGCAGATTGAAGTTACTGTCCAATCTTTT
1 GAAGCCACTTCCAAACTTTTA-CCCTAGTCAAGAGAGACAGATTGAAGTCACCGTCCAACCTTTT
* * * * *
21331003 ACCCCTAATC-AGGAGGGGCGGATTGAAGCCATCATCTAATCTTTTACCCCT
65 ACCCCTAACCTA-AAGGGGCAGATTGAAGCCAT-ATCCAAACTTTTACCCCT
21331054 CAGTCAAAAG
Statistics
Matches: 98, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
130 13 0.13
131 62 0.63
132 8 0.08
133 15 0.15
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (132 bp):
GAAGCCACTTCCAAACTTTTACCCTAGTCAAGAGAGACAGATTGAAGTCACCGTCCAACCTTTTA
CCCCTAACCTAAAGGGGCAGATTGAAGCCATATCCAAACTTTTACCCCTAACCTAAAGGGGCAGG
TT
Found at i:21331083 original size:44 final size:44
Alignment explanation
Indices: 21331026--21331151 Score: 157
Period size: 44 Copynumber: 2.8 Consensus size: 44
21331016 AGGGGCGGAT
21331026 TGAAGCCATCATCTAATCTTTTACCCCTCAGTCAAAAG-GCAGAC
1 TGAAGCCATCATCTAATCTTTTACCCCT-AGTCAAAAGTGCAGAC
* * *
21331070 TGAAGCCATCATCTAATCTTTTACCCCTA-ACAAAAGGTGTATAC
1 TGAAGCCATCATCTAATCTTTTACCCCTAGTCAAAA-GTGCAGAC
* * *
21331114 TGAAGCAATCATCCAATCTTTTACCTCTAAGTCAAAAG
1 TGAAGCCATCATCTAATCTTTTACCCCT-AGTCAAAAG
21331152 CGTCATATTA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
42 5 0.07
43 2 0.03
44 57 0.80
45 2 0.03
46 5 0.07
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (44 bp):
TGAAGCCATCATCTAATCTTTTACCCCTAGTCAAAAGTGCAGAC
Found at i:21331385 original size:85 final size:85
Alignment explanation
Indices: 21331234--21331488 Score: 298
Period size: 85 Copynumber: 3.0 Consensus size: 85
21331224 CTTCAAACCC
* * *
21331234 CCATCTTCTTGATGAGATAAAGAGAAGTGGATCAAAATAATAAAGTGGTCATCTTCCTTATGAGA
1 CCATCTTCTTGATGAGATAAAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCCTAATGAGA
21331299 TACAGAGAAGTGGACCAAA-
66 TACAGAGAAGTGGACCAAAT
* * * * ** *
21331318 CCTATCTTCCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCCGATAAG
1 CC-ATCTTCTTGATGAGATAAAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCCTAATGAG
*
21331383 ATACAGAGAAGTGAACCAAAT
65 ATACAGAGAAGTGGACCAAAT
** * * * * *
21331404 CCGCCCTCTTGATGAGATACAA-AGAAGTGGATTAAATCAATGAAGCGGTCAACTTCCTAATGAG
1 CCATCTTCTTGATGAGATA-AAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCCTAATGAG
* *
21331468 ATATAGAGAAGTAGACCAAAT
65 ATACAGAGAAGTGGACCAAAT
21331489 AAATGAAGCA
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
84 2 0.01
85 137 0.96
86 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (85 bp):
CCATCTTCTTGATGAGATAAAGAGAAGTGGATCAAAACAATAAAGCGGTCATCTTCCTAATGAGA
TACAGAGAAGTGGACCAAAT
Found at i:21331630 original size:209 final size:208
Alignment explanation
Indices: 21331326--21331867 Score: 694
Period size: 209 Copynumber: 2.6 Consensus size: 208
21331316 AACCTATCTT
* * * *
21331326 CCTGATGAGATATAGAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCCGATAAGATACAGAG
1 CCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAG
* * *
21331391 AAGTGAACCAAATCCGCCCTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCAA
66 AAGTG-ACCAAATCTGCCTTCCTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCAA
* *
21331456 CTTCCTAATGAGATATAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTAAGTGAAACTT
130 CTTCCTAATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATATAAGTGAAACTT
21331521 CAAACCC-CTACCTA
195 CAAACCCTC-ACCTA
* * * * * *
21331535 CCTGATAAGATACAAAGAAGTGGGTTAAAGCAATAAAGCGGTTATATTCCTAATGAGATATAGAG
1 CCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAG
* * * * *
21331600 AAGTTGACCAAATTTGCCTTCCTAATGAGATACAGAGAAGTGGATTAAATCAATGATGCGGTCAT
66 AAG-TGACCAAATCTGCCTTCCTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCAA
* * *
21331665 CTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAATATGAGTGAAACTT
130 CTTCCTAATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATATAAGTGAAACTT
* *
21331730 CAAACCCTCATCTT
195 CAAACCCTCACCTA
* * * * *
21331744 CTTAATGAGATACAATGAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGATGAGGTACA-AT
1 CCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGA-
* * * **
21331808 GAAGCAGACCAAATCTGCCTTTCTGATGAGATACAGAA-AAGTAGACCAAATCAATGAAGC
65 GAAG-TGACCAAATCTGCCTTCCTGATGAGATACA-AAGAAGTGGATTAAATCAATGAAGC
21331868 AAAGCTCAAT
Statistics
Matches: 283, Mismatches: 46, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
208 1 0.00
209 278 0.98
210 4 0.01
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (208 bp):
CCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAGATACAGAG
AAGTGACCAAATCTGCCTTCCTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCAAC
TTCCTAATGAGATACAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATATAAGTGAAACTTC
AAACCCTCACCTA
Found at i:21331685 original size:85 final size:85
Alignment explanation
Indices: 21331542--21331697 Score: 222
Period size: 85 Copynumber: 1.8 Consensus size: 85
21331532 CTACCTGATA
* * * *
21331542 AGATACAAAGAAGTGGGTTAAAGCAATAAAGCGGTTATATTCCTAATGAGATATAGAGAAGTTGA
1 AGATACAAAGAAGTGGATTAAAGCAATAAAGCGGTCATATTCCTAATGAGATACAGAGAAGTAGA
21331607 CCAAATTTGCCTTCCTAATG
66 CCAAATTTGCCTTCCTAATG
* * * * *
21331627 AGATACAGAGAAGTGGATTAAATCAATGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGA
1 AGATACAAAGAAGTGGATTAAAGCAATAAAGCGGTCATATTCCTAATGAGATACAGAGAAGTAGA
*
21331692 TCAAAT
66 CCAAAT
21331698 CAATGAAGCA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 61 1.00
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.26
Consensus pattern (85 bp):
AGATACAAAGAAGTGGATTAAAGCAATAAAGCGGTCATATTCCTAATGAGATACAGAGAAGTAGA
CCAAATTTGCCTTCCTAATG
Found at i:21331860 original size:161 final size:161
Alignment explanation
Indices: 21331672--21332027 Score: 513
Period size: 161 Copynumber: 2.2 Consensus size: 161
21331662 CATCTTCCTA
21331672 ATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAATATGAGTGAAACTTCAAACC-
1 ATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAATATGAGTGAAACTTCAAACCT
* * *
21331736 CTCATCTTCTTAATGAGATACA-ATGAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGATGA
66 C-CATCTTCCTAATAAGATACATA-AAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGATGA
* * *
21331800 GGTACAATGAAGCAGACCAAATCTGCCTT-TCTG
129 GATACAAAGAAGCAGACCAAATCCGCCTTCT-TG
* * * *
21331833 ATGAGATACAGAAAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAAGTTCAAACCT
1 ATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAATATGAGTGAAACTTCAAACCT
* *
21331898 CCATCTTCCTAATAAGATACATAAAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGATGAGA
66 CCATCTTCCTAATAAGATACATAAAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGATGAGA
**
21331963 TACAAAGAAGTGGACCAAATCCGCCTTCTTG
131 TACAAAGAAGCAGACCAAATCCGCCTTCTTG
* *
21331994 AT-AGATACAGAGAAGTTGATTAAATCAATGAAGC
1 ATGAGATACAGAGAAGTAGATCAAATCAATGAAGC
21332028 GGTCATCTTC
Statistics
Matches: 174, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
160 28 0.16
161 143 0.82
162 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (161 bp):
ATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAATATGAGTGAAACTTCAAACCT
CCATCTTCCTAATAAGATACATAAAAGTGGGTCAAAGCAATAAAGCAGTCATCTTCCTGATGAGA
TACAAAGAAGCAGACCAAATCCGCCTTCTTG
Found at i:21332103 original size:208 final size:209
Alignment explanation
Indices: 21331830--21332275 Score: 581
Period size: 208 Copynumber: 2.1 Consensus size: 209
21331820 ATCTGCCTTT
* * *
21331830 CTGATGAGATACAGAAAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAAGTTCAAA
1 CTGATGAGATACAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTTCAAA
* * * *
21331895 C-CTCCATCTTCCTAATAAGATACATAAAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGAT
66 CGC-CCATCTTCCTAATAAGATACAGAAAAGTGGATCAAACTAATAAAGCGGTCATCTTCCTAAT
* * * * * * *
21331959 GAGATACAAAGAAGTGGACCAAATCCGCCTTCTTGAT-AGATACAGAGAAGTTGATTAAATCAAT
130 GAGATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGATACAGAAAAGTGGATCAAAGCAAT
*
21332023 GAAGCGGTCATCTTC
195 AAAGCGGTCATCTTC
* * *
21332038 CTGATGAGATACAGAGAAGTAAACCAAATCAATAAAGTAAAGTTCAATGTGAGTGAAACTTCAAA
1 CTGATGAGATACAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTTCAAA
* * * * * *
21332103 CGCCTATCTTCTTGATGAGATACAGAGAAGTGGATCAAACTAATAAAGCGTTCATCTTCCTAATG
66 CGCCCATCTTCCTAATAAGATACAGAAAAGTGGATCAAACTAATAAAGCGGTCATCTTCCTAATG
* * *
21332168 AGATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAAAAGTGGGTCAAAGCAATA
131 AGATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGATACAGAAAAGTGGATCAAAGCAATA
*
21332233 AAGTGGTCATCTTC
196 AAGCGGTCATCTTC
* * * *
21332247 CTAATAAGATACGGAGAAGTGGACCAAAT
1 CTGATGAGATACAGAGAAGTAGACCAAAT
21332276 TCGGCTTCTT
Statistics
Matches: 203, Mismatches: 33, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
208 144 0.71
209 59 0.29
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (209 bp):
CTGATGAGATACAGAGAAGTAGACCAAATCAATAAAGCAAAGCTCAATGTGAGTGAAACTTCAAA
CGCCCATCTTCCTAATAAGATACAGAAAAGTGGATCAAACTAATAAAGCGGTCATCTTCCTAATG
AGATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGATACAGAAAAGTGGATCAAAGCAATA
AAGCGGTCATCTTC
Found at i:21332150 original size:369 final size:370
Alignment explanation
Indices: 21331456--21332218 Score: 1047
Period size: 369 Copynumber: 2.1 Consensus size: 370
21331446 AAGCGGTCAA
* *
21331456 CTTCCTAATGAGATATAGAGAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTAAGTGAAACTT
1 CTTCCTGATGAGATATAGAAAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTAAGTGAAACTT
* * *
21331521 CAAACCCCTACCTACCTGATAAGATACAAAGAAGTGGGTTAAAGCAATAAAGCGGTTATATTCCT
66 CAAACCCCTACCTACCTAATAAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATATTCCT
* * * **
21331586 AATGAGATATAGAGAAGTTGACCAAATTTGCCTTCCTAATGAGATACAGAGAAGTGGATTAAATC
131 AATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATGAGATACAGAGAAGTGGATTAAATC
* * * *
21331651 AATGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCTCAA
196 AATGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAAACCAAATCAATAAAGCAAAGCTCAA
*
21331716 TATGAGTGAAACTTCAAACCCTCATCTTCTTAATGAGATACAATGAAGTGGGTCAAAGCAATAAA
261 TATGAGTGAAACTTCAAACCCTCATCTTCTTAATGAGATACAATGAAGTGGATCAAAGCAATAAA
* * * **
21331781 GCAG-TCATCTTCCTGATGAGGTACA-ATGAAGCAGACCAAATCTGC
326 GC-GTTCATCTTCCTAATGAGATACAGA-GAAGCAGACCAAACCCAC
* * * * *
21331826 CTTTCTGATGAGATACAGAAAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAAGTT
1 CTTCCTGATGAGATATAGAAAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTAAGTGAAACTT
* * * *
21331891 CAAACCTCC-ATCTTCCTAATAAGATACATAA-AAGTGGGTCAAAGTAATAAAGCGGTCATCTTC
66 CAAACC-CCTACCTACCTAATAAGATACA-AAGAAGTGGGTCAAAGCAATAAAGCGGTCATATTC
* * * *
21331954 CTGATGAGATACAAAGAAGTGGACCAAATCCGCCTTCTTGAT-AGATACAGAGAAGTTGATTAAA
129 CTAATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATGAGATACAGAGAAGTGGATTAAA
* * *
21332018 TCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAAGTAAACCAAATCAATAAAGTAAAGTTC
194 TCAATGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAAACCAAATCAATAAAGCAAAGCTC
* *
21332083 AATGTGAGTGAAACTTCAAACGCCT-ATCTTCTTGATGAGATACAGA-GAAGTGGATCAAA-CTA
259 AATATGAGTGAAACTTCAAAC-CCTCATCTTCTTAATGAGATACA-ATGAAGTGGATCAAAGC-A
**
21332145 ATAAAGCGTTCATCTTCCTAATGAGATACAGAGAAGTGGACCAAACCCAC
321 ATAAAGCGTTCATCTTCCTAATGAGATACAGAGAAGCAGACCAAACCCAC
21332195 CTTCCTGATGAGATATAGAAAAGT
1 CTTCCTGATGAGATATAGAAAAGT
21332219 GGGTCAAAGC
Statistics
Matches: 344, Mismatches: 42, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
368 2 0.01
369 191 0.56
370 147 0.43
371 4 0.01
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.24
Consensus pattern (370 bp):
CTTCCTGATGAGATATAGAAAAGTAGACCAAATAAATGAAGCAAAGCTCAATGTAAGTGAAACTT
CAAACCCCTACCTACCTAATAAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATATTCCT
AATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATGAGATACAGAGAAGTGGATTAAATC
AATGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAAACCAAATCAATAAAGCAAAGCTCAA
TATGAGTGAAACTTCAAACCCTCATCTTCTTAATGAGATACAATGAAGTGGATCAAAGCAATAAA
GCGTTCATCTTCCTAATGAGATACAGAGAAGCAGACCAAACCCAC
Found at i:21332360 original size:85 final size:84
Alignment explanation
Indices: 21332110--21332361 Score: 326
Period size: 85 Copynumber: 3.0 Consensus size: 84
21332100 AAACGCCTAT
* *
21332110 CTTCTTGATGAGATACAGAGAAGTGGATCAAACTAATAAAGCGTTCATCTTCCTAATGAGATACA
1 CTTCTTGATGAGATACAAAGAAGTGGATCAAAC-AATAAAGCGGTCATCTTCCTAATGAGATACA
*
21332175 GAGAAGTGGACCAAACCCAC
65 GAGAAGTGGACCAAATCCAC
* * * * *
21332195 CTTCCTGATGAGATATAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATAC
1 CTTCTTGATGAGATACA-AAGAAGTGGATCAAA-CAATAAAGCGGTCATCTTCCTAATGAGATAC
* * **
21332259 GGAGAAGTGGACCAAATTCGG
64 AGAGAAGTGGACCAAATCCAC
* *
21332280 CTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATACA
1 CTTCTTGATGAGATACAAAGAAGTGGATCAAA-CAATAAAGCGGTCATCTTCCTAATGAGATACA
*
21332345 GAGAAGTAGACCAAATC
65 GAGAAGTGGACCAAATC
21332362 AATGAAACAA
Statistics
Matches: 141, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
84 2 0.01
85 137 0.97
86 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (84 bp):
CTTCTTGATGAGATACAAAGAAGTGGATCAAACAATAAAGCGGTCATCTTCCTAATGAGATACAG
AGAAGTGGACCAAATCCAC
Found at i:21332431 original size:209 final size:209
Alignment explanation
Indices: 21332190--21335697 Score: 1559
Period size: 209 Copynumber: 16.8 Consensus size: 209
21332180 GTGGACCAAA
* * *
21332190 CCCACCTTCCTGATGAGATATAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * *
21332255 ATACGGAGAAGTGGACCAAATTCGGCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
*
21332320 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCTCAATGTGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
*
21332385 TAAAACTTCAAACC
196 TGAAACTTCAAACC
* * * * * * *
21332399 CCCATCTACCTGATAAGATATAGAAAAGTGGGTCAAAGTAATAAAGTGATCATATTACTAATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* ** * * * *
21332464 ATACAGAGAAGTTGACCAAATTTTCCTTCCTAATAAGATACAGGGAAGTGGATTAAATCAAT-AA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * * * *
21332528 TGCAGTCATCTTCCTAATAAGATACAGAGAATTAGATCAAATCAATGAAGCAAAGCTCAATATGA
131 -GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGA
21332593 GTGAAACTTCAAACC
195 GTGAAACTTCAAACC
* * ** * *
21332608 TCCATCTTCCTAATGAGATACA-AAGAAGTGGGTCAAAATAATAAAGAGGTCATTTTCCTAATGA
1 CCCATCTTCCTGATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGA
* * *
21332672 GATACAGTGAAGTGAACCAAA-TCTGCCTT-TCTAATGAGATACAGAGAAGTGGATTAAATCAAT
65 GATACAGAGAAGTGGACCAAATTC-GCCTTCT-TGATGAGATACAGAGAAGTGGATTAAATCAAT
* * * *
21332735 GAAGCGGTCATCTTCCTGATGAGATACAGAGAATTA-ACTAAATCAATGAAGCAAAGCTTAATGT
128 GAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGT
*
21332799 GAGTGAAAGTTCAAACC
193 GAGTGAAACTTCAAACC
* * * * *
21332816 TCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCTTGATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * *
21332881 ATACAAAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * *
21332946 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATTAAGCAAAGCACAATGTGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21333011 TGAAACTTCAAACC
196 TGAAACTTCAAACC
* * * * * * *
21333025 CTCATATTTCTAATGAGATACATAAAAGTGGGTCAAAGCAATAAAGTGATAATCTTCCTAATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * *
21333090 ATACAAAGAAGTGGACCAAATCCGCCTTCTTGATGAGATACAGTGAAGTGGGTTAAATTAATGAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * * * * * *
21333155 GCGGTCATCTTCCTGATGAGACACAAAGAAGTAAACCAAATTAATGAAGTAAAGCTCAATATGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
*
21333220 TAAAACTTCAAACC
196 TGAAACTTCAAACC
* * * * ** * *
21333234 CCCATATTCTTGATGAGATACA-AAGAAGTAGATCAAAATAATAAAGCGG---TC-TCCTGATGA
1 CCCATCTTCCTGATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGA
** * * * * * * * *
21333294 GATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAGAAATGGGTCAAAGCAATAA
65 GATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGA
* * * * * * * ** *** * *
21333359 AGCGATCATCTTCTTGATAAGATATAGAGAAGTGGACTAAATCCGCCTTCTTG-ATGAGATACAA
130 AGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAAT---CAATGAAGCA-AAGCT-CAA
* * * * * *
21333423 AGTAGTAGATTAAATCAATGAAGCG
190 TGT-G-AG-TGAAA-C-TTCAAACC
** * * * * ** * * *** * *
21333448 GTCATCTTCCTAATGAGATGCAGAGAAGTAGACCAAATCAATTAA--GCAAAGC-T-C-AATGTG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * * * * *
21333508 AGT---GA-AACT---TCAAA-CCCCCATCTACTTGATAAGATACAAAGAAGTGGGTTAAAGCAA
66 A-TACAGAGAAGTGGACCAAATTCGCC-T-T-CTTGATGAGATACAGAGAAGTGGATTAAATCAA
* ** * * * * * *** *
21333565 TAAAGCAATCATATTCCTAATGAGATATAGAGAAGTTGAGCAAAT--TTGCCTTTCTAATGAGAT
127 TGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATG--AAGC-AA--AGCT
* * *
21333628 ACAGA-G-AAGTG-GA-TT-AAATCA
187 -CA-ATGTGAGTGAAACTTCAAA-CC
*** * * * * * * * * *** * *
21333649 ATGATCCGGTCCTGATGAGATACATAGAAGTAGATTAAATCAATGAA--GCAAAGC-T-CAATAT
1 CCCAT-C-TTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTA-AT
* * * ** * * * * *
21333710 GAG-T---GA-AACT---TCAAACCTCTATCTTCTTAATGAGATACAAAGAAGTGGGTCAAAGCA
63 GAGATACAGAGAAGTGGACCAAA-TTC-GCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCA
* * * * * ** ** *
21333767 TTAAAGCAGTCATCTTCCTGATGAGATACAGTA-AAGTGGACCAAATCCGCCTGTCTG-ATAAGA
126 ATGAAGCGGTCATCTTCCTAATGAGATACAG-AGAAGTAGACCAAAT-C-AATG-AAGCA-AAGC
* * * * * *
21333830 TACAGAGAGGTG-GATTAAATCAATGAAGCG
186 T-C--A-ATGTGAG-TGAAA-C-TTCAAACC
*** * * * ** * * ** * *
21333860 GTTATCTTCCTGATAAGATACAGAGAAGTAGACCAAATCAATGAA-T-GAAAGC-T--TAATGTG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * ** * * * * *
21333920 AGT---GA-AAGT--TCAAACATCCATCTTCCTGATGGGATACAAAGAAGTAGG-TCAAAACAAT
66 A-TACAGAGAAGTGGACCAA-ATTCGCCTTCTTGATGAGATACAGAGAAGT-GGATTAAATCAAT
* * * * * * * * *** * *
21333978 AAAGTGGTCATCTTCTTGATGAGATACAAAGAAGTGGATCAAATTCGCCATCCTG-ATGAGATAC
128 GAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAA-T--CAATGAAGCA-AAGCT-C
* * * * *
21334042 AGAGTCGTCGA-TTAAATCAATGAAGCG
188 A-A-T-GT-GAGTGAAA-C-TTCAAACC
** * *** * * * * * **
21334069 GTCATCTTCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCAGTCATCTTCCTAATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
** * ** ** * *
21334134 ATACAGAGAAGTAAATCAAA-T---C--AATGA--AGCA-A-AGCTCAA-TGTGAGTGAAA-C-T
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAG-ATACAG-AGAAGTG-GA-TTAAATCAA
* * *** * * * * * ** * * ** *
21334186 TCAAACCCCCATCTTCTTTATGAGATATATAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTC-
127 TGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGC--AAAGC-TCA
* * * *
21334250 ATGATGAGATACAAAGAAGTGGACCAAATC
189 ATG-TGAG-T---GA-AACT---TCAAACC
* * * * * * * * * *
21334280 CGC--CTTCTTGATGAGATATA-AAGAAGTGGATTAAATCAATGAAGCGGACATCTTCCTGATGA
1 CCCATCTTCCTGATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGA
* ** ** * ** * *
21334342 GATAC--AGATGTAAACCAAA-T---C--AATGA--AG-TAAAGCTCAA-TGTGAGTGAAA-C-T
65 GATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAG-AGAAGTG-GA-TTAAATCAA
* * *** * * * * * ** *
21334393 TCAAACCCCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAAAT-AATAAAGCGTTTATCTTC
127 TGAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGA-CCAAATCAATGAAGC--AAAGC-TC
* * *
21334457 -CTGATGAGATACAGAGAAGTGGACCAAA--
188 AATG-TGAG-T---GA-AACT---TCAAACC
* * * * * * * * * *
21334485 CCCACCTTCCTGATGAGATATAGAGAAGAGCGTCAAAGTAATAAAGCGATCATCTTCCTGATAAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * *
21334550 ATACAGAGAAGTGGACCAAATCCGGCTTTTTGATGAGATACAAAGAAGTGGATTAAATCAATAAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
21334615 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21334680 TGAAACTTCAAACC
196 TGAAACTTCAAACC
* * * * * * ** * *
21334694 CCCATCTACCTGATAAGATATAGAGAAGAGGGTCAAAGAAATAAAGCAGTCATATTCCTAATAAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * * *
21334759 ATACAGAGAAGTTGACCAAATTTGCCTTCCTAATGAGATACAGAGAAGTGGACTAAATCAATGAT
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * * * * * *
21334824 GCGGTCATCTTCTTGATAAGATACAGGGAATTAGATCAAATCAATGAAGCAAAGCTCAATATGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21334889 TGAAACTTCAAACC
196 TGAAACTTCAAACC
* * * * * *
21334903 CCCGTCTTCCTAATGAGATACA-AAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGA
1 CCCATCTTCCTGATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGA
* * * *
21334967 GATACAGTGAAGTAGACCAAATTTGCCTT-TCTGATGAGATACAGAGAAGTGGATTAAATCAATT
65 GATACAGAGAAGTGGACCAAATTCGCCTTCT-TGATGAGATACAGAGAAGTGGATTAAATCAATG
* * * * *
21335031 AAGCGTTCATCTTCCTGATGAGATACAGAGAATTA-ACCAAATCAATGAAGAAAAGCTTAATGTG
129 AAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTG
*
21335095 AGTGAAAGTTCAAACC
194 AGTGAAACTTCAAACC
* * * * * *
21335111 TCCATCTTCTTGATGAGATACAAAAAAATGGGTCAAAGCAATAAAGTGGTCATCTTCTTGATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * * * *
21335176 ATACAAAGAAGTTGACCAAATTCTCCTTCCTAATGAGATACAGAGAAGTCGATTAAATCAATAAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * *
21335241 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATTAAGTAAAGCTCAATGTGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21335306 TGAAACTTCAAACC
196 TGAAACTTCAAACC
** * * * * * * *
21335320 CTTATATTTCTGATGAGATACATAAAAGTGGGTCAAAGCAATAGAGCGGTAATCTTTCTAATGAG
1 CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
* * * * * * *
21335385 ATACAAAGAAGCGGATCAAATCCGTCTTCTTGATGAGATACAGTGAAGTGGGTTAAATCAATGAA
66 ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
* * * * ** * *
21335450 GCGGTCATCTTCCTGAT-A-AGACACAGAAGTAAATTAAATCAATGAAGTAAAGCTAAATGTGAG
131 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
*
21335513 TGAAATTTCAAA-C
196 TGAAACTTCAAACC
* * * ** ** *
21335526 CCCATCTTCTTGATGTGATACA-AAGAAGTGGATCAAAATAATAAAGCAGTCATCTTCCTGATGA
1 CCCATCTTCCTGATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGA
* * ** * * * * * ** *
21335590 CATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAGAAGTGGGTCAAAGAAATAA
65 GATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGA
* * * * *
21335655 AGTGGTCATCTTCCTGATAAGATATAGAGAAGTGGACCAAATC
130 AGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATC
21335698 CGCCTTCTTG
Statistics
Matches: 2641, Mismatches: 523, Indels: 271
0.77 0.15 0.08
Matches are distributed among these distances:
200 2 0.00
201 5 0.00
202 1 0.00
203 125 0.05
204 10 0.00
205 112 0.04
206 138 0.05
207 239 0.09
208 398 0.15
209 1410 0.53
210 27 0.01
211 24 0.01
212 11 0.00
213 8 0.00
214 47 0.02
215 12 0.00
216 10 0.00
217 16 0.01
218 44 0.02
219 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.24
Consensus pattern (209 bp):
CCCATCTTCCTGATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAG
ATACAGAGAAGTGGACCAAATTCGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAA
GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
TGAAACTTCAAACC
Found at i:21332462 original size:294 final size:293
Alignment explanation
Indices: 21331211--21332558 Score: 1061
Period size: 294 Copynumber: 4.6 Consensus size: 293
21331201 AGTGAAGCAT
* * * * * * *
21331211 AATGTGAGTTAAACTTCAAACCCCCATCTTCTTGATGAGATAAAGAGAAGTGGATCAAAATAATA
1 AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATACAGAAAAGTGGATCAAACTAATA
* * * * * * * * * *
21331276 AAGTGGTCATCTTCCTTATGAGATACAGAGAAGTGGACCAAACCTATCTTCCTGATGAGATATAG
66 AAGCGATCATATTACTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTAATAAGATACAG
* ** *
21331341 AGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCCGATAAGATACAGAGAAGTGAACCAAATCC
131 AAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTGGACCAAATCC
* *
21331406 GCCCTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCAACTTCCTAATGAGATA
196 GCCTTCTTGAT-AGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATA
* * * *
21331471 TAGAGAAGTAGACCAAATAAATGAAGCAAAGCTC
260 CAGAGAAGTAAACCAAATCAATAAAGCAAAGCTC
* * * * * *
21331505 AATGTAAGTGAAACTTCAAACCCCTACCTACCTGATAAGATACA-AAGAAGTGGGTTAAAGC-AA
1 AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATACAGAA-AAGTGGATCAAA-CTAA
* * * * * **** *
21331568 TAAAGCGGTTATATTCCTAATGAGATATAGAGAAGTTGACCAAATTTGCCTTCCTAATGAGATAC
64 TAAAGCGATCATATTACTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTAATAAGATAC
* * * * * * * * *
21331633 AGAGAAGTGGATTAAATCAATGATGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAAT
129 AGAAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTGGACCAAAT
** *** * * * ** *
21331698 ---CAATGAAGCAAAGCT-CAATATG-AGT-GA--AACTTC-A--AA-CCCTCATCTTCTTAATG
194 CCGCCTTCTTG-ATAGATACAA-A-GAAGTGGATTAA-ATCAATGAAGCGGTCATCTTCCTAATG
**** * * *
21331751 AGATACA-ATGAAGTGGGTCAAAGCAATAAAGCAGTCATCTTC
255 AGATACAGA-GAAGTAAACCAAATCAATAAAGCA--AAGC-TC
* * * * ** * * * *
21331793 -CTGATGAGGTACAA--TGAAGCAGACCAAATCTGCCTTTCTGATGAGATACAGAAAAGTAGACC
1 AATG-TGA-GTAAAACTTCAA--A-CCCCCATCT-AC---CTGATAAGATACAGAAAAGTGGATC
* * * * *
21331855 AAA-TCAATGAAGC-A--A-A--GCTCAATGTGAGT---GA-AAGT---TCAAACCTCCATCTTC
57 AAACT-AATAAAGCGATCATATTACT-AATGAGA-TACAGAGAAGTGGACCAAA-C-CCACCTTC
* * * * *
21331906 CTAATAAGATACATAAAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCTGATGAGATACAAAGA
117 CTAATAAGATACAGAAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGA
* *
21331971 AGTGGACCAAATCCGCCTTCTTGATAGATACAGAGAAGTTGATTAAATCAATGAAGCGGTCATCT
182 AGTGGACCAAATCCGCCTTCTTGATAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCT
* * *
21332036 TCCTGATGAGATACAGAGAAGTAAACCAAATCAATAAAGTAAAGTTC
247 TCCTAATGAGATACAGAGAAGTAAACCAAATCAATAAAGCAAAGCTC
* * * * * * *
21332083 AATGTGAGTGAAACTTCAAACGCCTATCTTCTTGATGAGATACAGAGAAGTGGATCAAACTAATA
1 AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATACAGAAAAGTGGATCAAACTAATA
* * * * * *
21332148 AAGCGTTCATCTTCCTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAG
66 AAGCGATCATATTACTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTAATAAGATACAG
* * *
21332213 AAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACGGAGAAGTGGACCAAATTC
131 AAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTGGACCAAATCC
*
21332278 GGCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATA
196 GCCTTCTTGAT-AGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATA
*
21332343 CAGAGAAGTAGACCAAATCAATGAAA-CAAAGCTC
260 CAGAGAAGTAAACCAAATCAAT-AAAGCAAAGCTC
* * *
21332377 AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATATAGAAAAGTGGGTCAAAGTAATA
1 AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATACAGAAAAGTGGATCAAACTAATA
* * ****
21332442 AAGTGATCATATTACTAATGAGATACAGAGAAGTTGACCAAATTTTCCTTCCTAATAAGATACAG
66 AAGCGATCATATTACTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTAATAAGATACAG
** * * * * *
21332507 GGAAGTGGATTAAATCAATAATGCAGTCATCTTCCTAATAAGATACAGAGAA
131 AAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAA
21332559 TTAGATCAAA
Statistics
Matches: 811, Mismatches: 185, Indels: 116
0.73 0.17 0.10
Matches are distributed among these distances:
283 4 0.00
284 32 0.04
285 106 0.13
286 7 0.01
287 19 0.02
288 22 0.03
289 26 0.03
290 22 0.03
291 20 0.02
292 8 0.01
293 124 0.15
294 412 0.51
295 9 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (293 bp):
AATGTGAGTAAAACTTCAAACCCCCATCTACCTGATAAGATACAGAAAAGTGGATCAAACTAATA
AAGCGATCATATTACTAATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTAATAAGATACAG
AAAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTGGACCAAATCC
GCCTTCTTGATAGATACAAAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATAC
AGAGAAGTAAACCAAATCAATAAAGCAAAGCTC
Found at i:21332965 original size:85 final size:85
Alignment explanation
Indices: 21332821--21332977 Score: 233
Period size: 85 Copynumber: 1.8 Consensus size: 85
21332811 AAACCTCCAT
* * * * *
21332821 CTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCTTGATGAGATACA
1 CTTCTTGATGAGATACAAAAAAGTCGATCAAAGCAATAAAGCGGTCATCTTCCTAATGAGATACA
21332886 AAGAAGTGGACCAAAATCGC
66 AAGAAGTGGACCAAAATCGC
* * *
21332906 CTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAAGCGGTCATCTTCCTAATGAGATACA
1 CTTCTTGATGAGATACAAAAAAGTCGATCAAAGCAATAAAGCGGTCATCTTCCTAATGAGATACA
*
21332971 GAGAAGT
66 AAGAAGT
21332978 AGATCAAATC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (85 bp):
CTTCTTGATGAGATACAAAAAAGTCGATCAAAGCAATAAAGCGGTCATCTTCCTAATGAGATACA
AAGAAGTGGACCAAAATCGC
Found at i:21332983 original size:417 final size:416
Alignment explanation
Indices: 21332195--21333391 Score: 1535
Period size: 417 Copynumber: 2.9 Consensus size: 416
21332185 CCAAACCCAC
* * * *
21332195 CTTCCTGATGAGATATAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACG
1 CTTCCTAATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAGATACA
* *
21332260 GAGAAGTGGACCAAAT-TCGGCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGG
66 GAGAAGTGGACCAAATCT-GCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGG
* * *
21332324 TCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCTCAATGTGAGTAAA
130 TCATCTTCCTGATGAGATACAGAGAATTA-ACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAA
* * * * * * *
21332389 ACTTCAAACCCCCATCTACCTGATAAGATATAGAAAAGTGGGTCAAAGTAATAAAGTGATCATAT
194 ACTTCAAACCCCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGTAATAAAGTGGTCATCT
* * * ** * * *
21332454 TACTAATGAGATACAGAGAAGTTGACCAAATTTTCCTTCCTAATAAGATACAGGGAAGTGGATTA
259 T-CTGATGAGATACAGAGAAGTGGACCAAAATCACCTTCCTGATGAGATACAGAGAAGTGGATTA
* * *
21332519 AATCAATAATGCAGTCATCTTCCTAATAAGATACAGAGAATTAGATCAAATCAATGAAGCAAAGC
323 AATCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGC
*
21332584 TCAATATGAGTGAAACTTCAAA-CCTCCAT
388 ACAATATGAGTGAAACTTCAAACCCT-CAT
** * *
21332613 CTTCCTAATGAGATACA-AAGAAGTGGGTCAAAATAATAAAGAGGTCATTTTCCTAATGAGATAC
1 CTTCCTAATGAGATACAGAA-AAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAGATAC
* * *
21332677 AGTGAAGTGAACCAAATCTGCCTT-TCTAATGAGATACAGAGAAGTGGATTAAATCAATGAAGCG
65 AGAGAAGTGGACCAAATCTGCCTTCT-TGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCG
* * *
21332741 GTCATCTTCCTGATGAGATACAGAGAATTAACTAAATCAATGAAGCAAAGCTTAATGTGAGTGAA
129 GTCATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAA
* * *
21332806 AGTTCAAACCTCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCT
194 ACTTCAAACCCCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGTAATAAAGTGGTCATCT
* * * * *
21332871 TCTTGATGAGATACAAAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTA
259 TC-TGATGAGATACAGAGAAGTGGACCAAAATCACCTTCCTGATGAGATACAGAGAAGTGGATTA
* *
21332936 AATCAATAAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATTAAGCAAAGC
323 AATCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGC
*
21333001 ACAATGTGAGTGAAACTTCAAACCCTCAT
388 ACAATATGAGTGAAACTTCAAACCCTCAT
* * * * *
21333030 ATTTCTAATGAGATACATAAAAGTGGGTCAAAGCAATAAAGTGATAATCTTCCTAATGAGATACA
1 CTTCCTAATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAGATACA
* * * * *
21333095 AAGAAGTGGACCAAATCCGCCTTCTTGATGAGATACAGTGAAGTGGGTTAAATTAATGAAGCGGT
66 GAGAAGTGGACCAAATCTGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGGT
* * * * * *
21333160 CATCTTCCTGATGAGACACAAAGAAGTAAACCAAATTAATGAAGTAAAGCTCAATATGAGTAAAA
131 CATCTTCCTGATGAGATACAGAGAA-TTAACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAAA
* * * * * *
21333225 CTTCAAACCCCCATATTCTTGATGAGATACAAAGAAGTAGATCAAAATAATAAAGCGGTC-TC--
195 CTTCAAACCCCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGTAATAAAGTGGTCATCTT
** * * * *
21333287 CTGATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAGAAATGGGTCAAA
260 CTGATGAGATACAGAGAAGTGGACCAAAATCACCTTCCTGATGAGATACAGAGAAGTGGATTAAA
* * * * *
21333352 GCAATAAAGCGATCATCTTCTTGATAAGATATAGAGAAGT
325 TCAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGT
21333392 GGACTAAATC
Statistics
Matches: 672, Mismatches: 99, Indels: 20
0.85 0.13 0.03
Matches are distributed among these distances:
414 87 0.13
415 1 0.00
416 1 0.00
417 357 0.53
418 225 0.33
419 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24
Consensus pattern (416 bp):
CTTCCTAATGAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATGAGATACA
GAGAAGTGGACCAAATCTGCCTTCTTGATGAGATACAGAGAAGTGGATTAAATCAATGAAGCGGT
CATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGCAAAGCTCAATGTGAGTAAAAC
TTCAAACCCCCATCTTCTTGATGAGATACAAAAAAGTGGGTCAAAGTAATAAAGTGGTCATCTTC
TGATGAGATACAGAGAAGTGGACCAAAATCACCTTCCTGATGAGATACAGAGAAGTGGATTAAAT
CAATAAAGCGGTCATCTTCCTAATAAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAGCACA
ATATGAGTGAAACTTCAAACCCTCAT
Found at i:21333024 original size:626 final size:622
Alignment explanation
Indices: 21332195--21333389 Score: 1654
Period size: 626 Copynumber: 1.9 Consensus size: 622
21332185 CCAAACCCAC
* * *
21332195 CTTCCTGATGAGATATAGAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACG
1 CTTCCTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACA
* * * * *
21332260 GAGAAGTGGACCAAATTCGGCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATGAAGCGGT
66 AAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAAGCGGT
*
21332325 CATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCTCAATGTGAGTAAAA
131 CATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCACAATGTGAGTAAAA
* * * * *
21332390 CTTCAAACCCCCATCTACCTGATAAGATATAGAAAAGTGGGTCAAAGTAATAAAGTGATCATATT
196 CTTCAAACCCCCATATACCTAATAAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGATAATATT
* * ***
21332455 ACTAATGAGATACAGAGAAGTTGACCAAATTTTCCTTCCTAATAAGATACAGGGAAGTGGATTAA
261 ACTAATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATAAGATACAGGGAAGTGGATTAA
* * * * *
21332520 ATCAAT-AATGCAGTCATCTTCCTAATAAGATACAGAGAATTAGATCAAATCAATGAAGCAAAGC
326 ATCAATGAA-GCAGTCATCTTCCTAATAAGACACAAAGAAGTAAACCAAATCAATGAAGCAAAGC
* * * * *
21332584 TCAATATGAGTGAAACTTCAAACCTCCATCTTCCTAATGAGATACAAAGAAGTGGGTCAAAATAA
390 TCAATATGAGTAAAACTTCAAACCCCCATATTCCTAATGAGATACAAAGAAGTAGATCAAAATAA
* * ** *
21332649 TAAAGAGGTCATTTTCCTAATGAGATACAGTGAAGTGAACCAAATCTGCCTTTCTAATGAGATAC
455 TAAAGAGGTC----TCCTAATGAGATACAGAGAAGTGAACCAAACCCACCTTCCTAATGAGATAC
* * * * * *
21332714 AGAGAAGTGGATTAAATCAATGAAGCGGTCATCTTCCTGATGAGATACAGAGAATTAACTAAATC
516 AGAGAAATGGATCAAAGCAATAAAGCGATCATCTTCCTGATAAGATACAGAGAATTAACTAAATC
21332779 AATGAAGCAAAGCTTAATGTGAGTGAAAGTTCAAACCTCCAT
581 AATGAAGCAAAGCTTAATGTGAGTGAAAGTTCAAACCTCCAT
* * * *
21332821 CTTCTTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCTTGATGAGATACA
1 CTTCCTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACA
21332886 AAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAAGCGGT
66 AAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAAGCGGT
* * * *
21332951 CATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATTAAGCAAAGCACAATGTGAGTGAAA
131 CATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCACAATGTGAGTAAAA
* ** * * *
21333016 CTTCAAACCCTCATATTTCTAATGAGATACATAAAAGTGGGTCAAAGCAATAAAGTGATAATCTT
196 CTTCAAACCCCCATATACCTAATAAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGATAATATT
* * * * * *
21333081 CCTAATGAGATACAAAGAAGTGGACCAAATCCGCCTTCTTGATGAGATACAGTGAAGTGGGTTAA
261 ACTAATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATAAGATACAGGGAAGTGGATTAA
* * * * * *
21333146 ATTAATGAAGCGGTCATCTTCCTGATGAGACACAAAGAAGTAAACCAAATTAATGAAGTAAAGCT
326 ATCAATGAAGCAGTCATCTTCCTAATAAGACACAAAGAAGTAAACCAAATCAATGAAGCAAAGCT
* *
21333211 CAATATGAGTAAAACTTCAAACCCCCATATTCTTGATGAGATACAAAGAAGTAGATCAAAATAAT
391 CAATATGAGTAAAACTTCAAACCCCCATATTCCTAATGAGATACAAAGAAGTAGATCAAAATAAT
* * * * *
21333276 AAAGCGGTCTCCTGATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAGA
456 AAAGAGGTCTCCTAATGAGATACAGAGAAGTGAACCAAACCCACCTTCCTAATGAGATACAGAGA
* * *
21333341 AATGGGTCAAAGCAATAAAGCGATCATCTTCTTGATAAGATATAGAGAA
521 AATGGATCAAAGCAATAAAGCGATCATCTTCCTGATAAGATACAGAGAA
21333390 GTGGACTAAA
Statistics
Matches: 492, Mismatches: 76, Indels: 6
0.86 0.13 0.01
Matches are distributed among these distances:
622 87 0.18
626 403 0.82
627 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.24
Consensus pattern (622 bp):
CTTCCTGATGAGATACAAAAAAGTGGGTCAAAGCAATAAAGTGGTCATCTTCCTAATAAGATACA
AAGAAGTGGACCAAAATCGCCTTCTTGATGAGATACAAAGAAGTCGATTAAATCAATAAAGCGGT
CATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAACAAAGCACAATGTGAGTAAAA
CTTCAAACCCCCATATACCTAATAAGATACAGAAAAGTGGGTCAAAGCAATAAAGTGATAATATT
ACTAATGAGATACAAAGAAGTGGACCAAATCCGCCTTCCTAATAAGATACAGGGAAGTGGATTAA
ATCAATGAAGCAGTCATCTTCCTAATAAGACACAAAGAAGTAAACCAAATCAATGAAGCAAAGCT
CAATATGAGTAAAACTTCAAACCCCCATATTCCTAATGAGATACAAAGAAGTAGATCAAAATAAT
AAAGAGGTCTCCTAATGAGATACAGAGAAGTGAACCAAACCCACCTTCCTAATGAGATACAGAGA
AATGGATCAAAGCAATAAAGCGATCATCTTCCTGATAAGATACAGAGAATTAACTAAATCAATGA
AGCAAAGCTTAATGTGAGTGAAAGTTCAAACCTCCAT
Found at i:21333437 original size:37 final size:37
Alignment explanation
Indices: 21333368--21333438 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 37
21333358 AAGCGATCAT
* * *
21333368 CTTCTTGATAAGATATAGAGAAGTGGACTAAATCCGC
1 CTTCTTGATAAGATACAAAGAAGTAGACTAAATCCGC
* * *
21333405 CTTCTTGATGAGATACAAAGTAGTAGATTAAATC
1 CTTCTTGATAAGATACAAAGAAGTAGACTAAATC
21333439 AATGAAGCGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.30
Consensus pattern (37 bp):
CTTCTTGATAAGATACAAAGAAGTAGACTAAATCCGC
Found at i:21333486 original size:85 final size:85
Alignment explanation
Indices: 21333240--21333486 Score: 261
Period size: 85 Copynumber: 3.0 Consensus size: 85
21333230 AACCCCCATA
21333240 TTCTTGATGAGATACAAAGAAGTAGATCAAAAT-AATAAAGCGG---TC-TCCTGATGAGATACA
1 TTCTTGATGAGATACAAAGAAGTAGAT-AAAATCAATAAAGCGGTCATCTTCCTGATGAGATACA
*
21333300 GAGAAGTGGACCAAACCCACC
65 GAGAAGTGGACCAAATCCACC
* * * * * * * * * * * *
21333321 TTCCTGATGAGATATAGAGAAATGGGTCAAAGCAATAAAGCGATCATCTTCTTGATAAGATATAG
1 TTCTTGATGAGATACAAAGAAGTAGATAAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAG
* *
21333386 AGAAGTGGACTAAATCCGCC
66 AGAAGTGGACCAAATCCACC
* * * * *
21333406 TTCTTGATGAGATACAAAGTAGTAGATTAAATCAATGAAGCGGTCATCTTCCTAATGAGATGCAG
1 TTCTTGATGAGATACAAAGAAGTAGATAAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAG
*
21333471 AGAAGTAGACCAAATC
66 AGAAGTGGACCAAATC
21333487 AATTAAGCAA
Statistics
Matches: 128, Mismatches: 33, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
80 3 0.02
81 30 0.23
84 2 0.02
85 93 0.73
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.23
Consensus pattern (85 bp):
TTCTTGATGAGATACAAAGAAGTAGATAAAATCAATAAAGCGGTCATCTTCCTGATGAGATACAG
AGAAGTGGACCAAATCCACC
Found at i:21334104 original size:48 final size:48
Alignment explanation
Indices: 21334028--21334164 Score: 211
Period size: 48 Copynumber: 2.9 Consensus size: 48
21334018 AAATTCGCCA
* *
21334028 TCCTGATGAGATACAGAGTCGTCGATTAAATCAATGAAGCGGTCATCT
1 TCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCAGTCATCT
21334076 TCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCAGTCATCT
1 TCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCAGTCATCT
** ** *
21334124 TCCTAATGAGATACAGAGAAGTAAATCAAATCAATGAAGCA
1 TCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCA
21334165 AAGCTCAATG
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.25
Consensus pattern (48 bp):
TCCTAATGAGATACAGAGTCGTCGATTAAATCAATGAAGCAGTCATCT
Found at i:21334429 original size:207 final size:207
Alignment explanation
Indices: 21334098--21334556 Score: 636
Period size: 207 Copynumber: 2.2 Consensus size: 207
21334088 ACAGAGTCGT
* * *
21334098 CGATTAAATCAATGAAGCAGTCATCTTCCTAATGAGATACAGAGAAGTAAATCAAATCAATGAAG
1 CGATTAAATCAATGAAGC-GACATCTTCCTGATGAGATAC--AGAAGTAAACCAAATCAATGAAG
* * * *
21334163 CAAAGCTCAATGTGAGTGAAACTTCAAACCCCCATCTTCTTTATGAGATATATAGAAGTGGGTCA
63 CAAAGCTCAATGTGAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAGAGAAGTGGATCA
* * * *
21334228 AAGCAATAAAGCGGTCATCTTCATGATGAGATACAAAGAAGTGGACCAAATCCGCCTTCTTGATG
128 AAACAATAAAGCGGTCATCTTCATGATGAGATACAAAGAAGTGGACCAAACCCACCTTCCTGATG
*
21334293 AGATATAAAGAAGTG
193 AGATATAAAGAAGAG
* *
21334308 -GATTAAATCAATGAAGCGGACATCTTCCTGATGAGATACAGATGTAAACCAAATCAATGAAGTA
1 CGATTAAATCAATGAAGC-GACATCTTCCTGATGAGATACAGAAGTAAACCAAATCAATGAAGCA
21334372 AAGCTCAATGTGAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAA
65 AAGCTCAATGTGAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAA
* * * * *
21334437 ATAATAAAGCGTTTATCTTCCTGATGAGATACAGAGAAGTGGACCAAACCCACCTTCCTGATGAG
130 ACAATAAAGCGGTCATCTTCATGATGAGATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAG
*
21334502 ATATAGAGAAGAG
195 ATATAAAGAAGAG
* * *
21334515 CG-TCAAAGT-AATAAAGCGATCATCTTCCTGATAAGATACAGA
1 CGATTAAA-TCAATGAAGCGA-CATCTTCCTGATGAGATACAGA
21334557 GAAGTGGACC
Statistics
Matches: 222, Mismatches: 24, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
206 2 0.01
207 182 0.82
208 2 0.01
209 36 0.16
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (207 bp):
CGATTAAATCAATGAAGCGACATCTTCCTGATGAGATACAGAAGTAAACCAAATCAATGAAGCAA
AGCTCAATGTGAGTGAAACTTCAAACCCCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAAA
CAATAAAGCGGTCATCTTCATGATGAGATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGA
TATAAAGAAGAG
Found at i:21334553 original size:85 final size:84
Alignment explanation
Indices: 21334400--21334654 Score: 323
Period size: 85 Copynumber: 3.0 Consensus size: 84
21334390 ACTTCAAACC
* * *
21334400 CCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAAATAATAAAGCGTTTATCTTCCTGATGAG
1 CCCACCTTCTTGATGAGATACAGAGAAGTGGATC-AAATAATAAAGCGATCATCTTCCTGATGAG
21334465 ATACAGAGAAGTGGACCAAA
65 ATACAGAGAAGTGGACCAAA
* * * *
21334485 CCCACCTTCCTGATGAGATATAGAGAAGAGCG-TCAAAGTAATAAAGCGATCATCTTCCTGATAA
1 CCCACCTTCTTGATGAGATACAGAGAAGTG-GATCAAA-TAATAAAGCGATCATCTTCCTGATGA
21334549 GATACAGAGAAGTGGACCAAA
64 GATACAGAGAAGTGGACCAAA
* ** * * * * *
21334570 TCCGGCTTTTTGATGAGATACAAAGAAGTGGATTAAATCAATAAAGCGGTCATCTTCCTAATGAG
1 CCCACCTTCTTGATGAGATACAGAGAAGTGGATCAAAT-AATAAAGCGATCATCTTCCTGATGAG
*
21334635 ATACAGAGAAGTAGACCAAA
65 ATACAGAGAAGTGGACCAAA
21334655 TCAATGAAGC
Statistics
Matches: 146, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
84 5 0.03
85 140 0.96
86 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.23
Consensus pattern (84 bp):
CCCACCTTCTTGATGAGATACAGAGAAGTGGATCAAATAATAAAGCGATCATCTTCCTGATGAGA
TACAGAGAAGTGGACCAAA
Found at i:21334778 original size:294 final size:291
Alignment explanation
Indices: 21334205--21334849 Score: 864
Period size: 294 Copynumber: 2.2 Consensus size: 291
21334195 CATCTTCTTT
* * * *
21334205 ATGAGATATATAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCATGATGAGATACAAAGAAGT
1 ATGAGATATAGAGAAGT-GGTCAAAGTAATAAAGCGGTCATCTTCATGATAAGATACAGAGAAGT
* *
21334270 GGACCAAATCCGCCTTCTTGATGAGATATAAAGAAGTGGATTAAATCAATGAAGCGGACATCTTC
65 GGACCAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATAAAGCGGACATCTTC
* * *
21334335 CTGATGAGATACAGATGTAAACCAAATCAATGAAGTAAAGCTCAATGTGAGTGAAACTTCAAACC
130 CTAATGAGATACAGAAGTAAACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACC
* * * * * * * *
21334400 CCCATCTTCTTGATGAGATACAGAGAAGTGGATCAAAATAATAAAGCGTTTATCTTCCTGATGAG
195 CCCATCTACCTGATAAGATACAGAGAAGAGGATCAAAATAATAAAGCGTTCATATTCCTAATAAG
*
21334465 ATACAGAGAAGTGGACCAAACCCACCTTCCTG
260 ATACAGAGAAGTGGACCAAACCCACCTTCCTA
* * *
21334497 ATGAGATATAGAGAAGAGCGTCAAAGTAATAAAGCGATCATCTTCCTGATAAGATACAGAGAAGT
1 ATGAGATATAGAGAAGTG-GTCAAAGTAATAAAGCGGTCATCTTCATGATAAGATACAGAGAAGT
* * *
21334562 GGACCAAATCCGGCTTTTTGATGAGATACAAAGAAGTGGATTAAATCAATAAAGCGGTCATCTTC
65 GGACCAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATAAAGCGGACATCTTC
*
21334627 CTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAA
130 CTAATGAGATAC--AGAAGTAAACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAA
* *
21334692 CCCCCATCTACCTGATAAGATATAGAGAAGAGGGTCAAAGA-AATAAAGCAG-TCATATTCCTAA
193 CCCCCATCTACCTGATAAGATACAGAGAAGAGGATCAAA-ATAATAAAGC-GTTCATATTCCTAA
* ****
21334755 TAAGATACAGAGAAGTTGACCAAATTTGCCTTCCTA
256 TAAGATACAGAGAAGTGGACCAAACCCACCTTCCTA
* * * * *
21334791 ATGAGATACAGAGAAGTGGACTAAA-TCAATGATGCGGTCATCTTCTTGATAAGATACAG
1 ATGAGATATAGAGAAGTGGTC-AAAGT-AATAAAGCGGTCATCTTCATGATAAGATACAG
21334850 GGAATTAGAT
Statistics
Matches: 307, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
291 1 0.00
292 127 0.41
293 3 0.01
294 174 0.57
295 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (291 bp):
ATGAGATATAGAGAAGTGGTCAAAGTAATAAAGCGGTCATCTTCATGATAAGATACAGAGAAGTG
GACCAAATCCGCCTTCTTGATGAGATACAAAGAAGTGGATTAAATCAATAAAGCGGACATCTTCC
TAATGAGATACAGAAGTAAACCAAATCAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACCC
CCATCTACCTGATAAGATACAGAGAAGAGGATCAAAATAATAAAGCGTTCATATTCCTAATAAGA
TACAGAGAAGTGGACCAAACCCACCTTCCTA
Found at i:21335035 original size:85 final size:84
Alignment explanation
Indices: 21334915--21335072 Score: 226
Period size: 85 Copynumber: 1.9 Consensus size: 84
21334905 CGTCTTCCTA
* * *
21334915 ATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGAGATACAGTGAAGT
1 ATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGT
21334980 AGACCAAATTTGCCTTTCTG
66 A-ACCAAATTTGCCTTTCTG
* * * * * *
21335000 ATGAGATACAGAGAAGTGGATTAAATCAATTAAGCGTTCATCTTCCTGATGAGATACAGAGAATT
1 ATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGT
21335065 AACCAAAT
66 AACCAAAT
21335073 CAATGAAGAA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 7 0.11
85 57 0.89
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.26
Consensus pattern (84 bp):
ATGAGATACAAAGAAGTGGATCAAAGCAATAAAGCGATCATCTTCCTGATGAGATACAGAGAAGT
AACCAAATTTGCCTTTCTG
Found at i:21335283 original size:417 final size:416
Alignment explanation
Indices: 21334485--21335697 Score: 1459
Period size: 417 Copynumber: 2.9 Consensus size: 416
21334475 GTGGACCAAA
* * * * * * * *
21334485 CCCACCTTCCTGATGAGATATAGAGAAGAGCGTCAAAGTAATAAAGCGATCATCTTCCTGATAAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGAG
* * *
21334550 ATACAGAGAAGTGGACCAAATCCGGCTTTTTGATGAGATACAAAGAAGTGGATTAAATCAATAAA
66 ATACAGAGAAGTGGACCAAATCCGCCTTTCTGATGAGATACAGAGAAGTGGATTAAATCAATAAA
* * * *
21334615 GCGGTCATCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
131 GCGGTCATCTTCCTGATGAGATACAGAGAATTA-ACCAAATCAATGAAGAAAAGCTAAATGTGAG
* * * * * *
21334680 TGAAACTTCAAACCCCCATCTACCTGATAAGATATAGAGAAGA-GGGTCAAAGAAATAAAGCAGT
195 TGAAACTTCAAA-CCCCATCTTCTTGATGAGATACA-AAAAAATGGGTCAAAGAAATAAAGCAGT
* * * *
21334744 CATATTCCTAATAAGATACAGAGAAGTTGACCAAATT-TGCCTTCCTAATGAGATACAGAGAAGT
258 CATCTTCCTGATGAGATACAAAGAAGTTGACCAAATTCT-CCTTCCTAATGAGATACAGAGAAGT
* * * * * *
21334808 GGACTAAATCAATGATGCGGTCATCTTCTTGATAAGATACAGGGAATTAGATCAAATCAATGAAG
322 GGATTAAATCAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTAGATCAAATCAATGAAG
21334873 CAAAGCTCAATATGAGTGAAACTTCAAACC
387 CAAAGCTCAATATGAGTGAAACTTCAAACC
* *
21334903 CCCGTCTTCCTAATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGAG
* * ** *
21334968 ATACAGTGAAGTAGACCAAATTTGCCTTTCTGATGAGATACAGAGAAGTGGATTAAATCAATTAA
66 ATACAGAGAAGTGGACCAAATCCGCCTTTCTGATGAGATACAGAGAAGTGGATTAAATCAATAAA
* *
21335033 GCGTTCATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGAAAAGCTTAATGTGAGT
131 GCGGTCATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGAAAAGCTAAATGTGAGT
* * **
21335098 GAAAGTTCAAACCTCCATCTTCTTGATGAGATACAAAAAAATGGGTCAAAGCAATAAAGTGGTCA
196 GAAACTTCAAACC-CCATCTTCTTGATGAGATACAAAAAAATGGGTCAAAGAAATAAAGCAGTCA
* *
21335163 TCTTCTTGATGAGATACAAAGAAGTTGACCAAATTCTCCTTCCTAATGAGATACAGAGAAGTCGA
260 TCTTCCTGATGAGATACAAAGAAGTTGACCAAATTCTCCTTCCTAATGAGATACAGAGAAGTGGA
* * * *
21335228 TTAAATCAATAAAGCGGTCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATTAAGTAA
325 TTAAATCAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTAGATCAAATCAATGAAGCAA
*
21335293 AGCTCAATGTGAGTGAAACTTCAAACC
390 AGCTCAATATGAGTGAAACTTCAAACC
** * * * * * *
21335320 CTTATATTTCTGATGAGATACATAA-AAGTGGGTCAAAGCAATAGAGCGGTAATCTTT-CTAATG
1 CCCATCTTCCTGATGAGATACA-AAGAAGTGGGTCAAAGCAATAAAGCGATCAT-TTTCCTGATG
* * * * * *
21335383 AGATACAAAGAAGCGGATCAAATCCGTC-TTCTTGATGAGATACAGTGAAGTGGGTTAAATCAAT
64 AGATACAGAGAAGTGGACCAAATCCGCCTTTC-TGATGAGATACAGAGAAGTGGATTAAATCAAT
* * * * * ** *
21335447 GAAGCGGTCATCTTCCTGATAAGACACAGA-AGTAAATTAAATCAATGAAGTAAAGCTAAATGTG
128 AAAGCGGTCATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGAAAAGCTAAATGTG
* * * * *
21335511 AGTGAAATTTCAAACCCCATCTTCTTGATGTGATACAAAGAAGTGGATCAAA-ATAATAAAGCAG
193 AGTGAAACTTCAAACCCCATCTTCTTGATGAGATACAAAAAAATGGGTCAAAGA-AATAAAGCAG
* * ** * * *
21335575 TCATCTTCCTGATGACATACAAAGAAGTGGACCAAACCCACCTTCCTGATGAGATATAGAGAAGT
257 TCATCTTCCTGATGAGATACAAAGAAGTTGACCAAATTCTCCTTCCTAATGAGATACAGAGAAGT
* * ** * * * *
21335640 GGGTCAAAGAAATAAAGTGGTCATCTTCCTGATAAGATATAGAGAAGTGGACCAAATC
322 GGATTAAATCAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTAGATCAAATC
21335698 CGCCTTCTTG
Statistics
Matches: 681, Mismatches: 107, Indels: 17
0.85 0.13 0.02
Matches are distributed among these distances:
415 144 0.21
416 52 0.08
417 337 0.49
418 148 0.22
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (416 bp):
CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGATCATTTTCCTGATGAG
ATACAGAGAAGTGGACCAAATCCGCCTTTCTGATGAGATACAGAGAAGTGGATTAAATCAATAAA
GCGGTCATCTTCCTGATGAGATACAGAGAATTAACCAAATCAATGAAGAAAAGCTAAATGTGAGT
GAAACTTCAAACCCCATCTTCTTGATGAGATACAAAAAAATGGGTCAAAGAAATAAAGCAGTCAT
CTTCCTGATGAGATACAAAGAAGTTGACCAAATTCTCCTTCCTAATGAGATACAGAGAAGTGGAT
TAAATCAATAAAGCGGTCATCTTCCTGATAAGATACAGAGAAGTAGATCAAATCAATGAAGCAAA
GCTCAATATGAGTGAAACTTCAAACC
Found at i:21335686 original size:85 final size:84
Alignment explanation
Indices: 21335521--21335780 Score: 286
Period size: 85 Copynumber: 3.0 Consensus size: 84
21335511 AGTGAAATTT
* * *
21335521 CAAACCCCATCTTCTTGATGTGATACAAAGAAGTGGATCAAAATAATAAAGCAGTCATCTTCCTG
1 CAAA-CCCACCTTCTTGATGAGATACAAAGAAGTGGATCAAAA-AATAAAGCGGTCATCTTCCTG
* * *
21335586 ATGACATACAAAGAAGTGGAC
64 ATAAGATACAGAGAAGTGGAC
* * * * *
21335607 CAAACCCACCTTCCTGATGAGATATAGAGAAGTGGGTCAAAGAAATAAAGTGGTCATCTTCCTGA
1 CAAACCCACCTTCTTGATGAGATACAAAGAAGTGGATCAAA-AAATAAAGCGGTCATCTTCCTGA
*
21335672 TAAGATATAGAGAAGTGGAC
65 TAAGATACAGAGAAGTGGAC
* * * * * * * * *
21335692 CAAATCCGCCTTCTTGATGAGATACAAAGTAGTAGATTAAATCAATGAAGCGGTCATTTTCCTAA
1 CAAACCCACCTTCTTGATGAGATACAAAGAAGTGGATCAAA-AAATAAAGCGGTCATCTTCCTGA
*
21335757 TAAGATACAGAGAAGTAGAC
65 TAAGATACAGAGAAGTGGAC
21335777 CAAA
1 CAAA
21335781 TCAATGAAGC
Statistics
Matches: 144, Mismatches: 29, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
85 139 0.97
86 5 0.03
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (84 bp):
CAAACCCACCTTCTTGATGAGATACAAAGAAGTGGATCAAAAAATAAAGCGGTCATCTTCCTGAT
AAGATACAGAGAAGTGGAC
Found at i:21336247 original size:209 final size:207
Alignment explanation
Indices: 21335611--21336477 Score: 1048
Period size: 209 Copynumber: 4.2 Consensus size: 207
21335601 GTGGACCAAA
* * * * * *
21335611 CCCACCTTCCTGATGAGATATAGAGAAGTGGGTCAAAGAAATAAAGTGGTCATCTTCCTGATAAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAG
* * * *
21335676 ATATAGAGAAGTGGACCAAATCCGCCTTCTTGATGAGATACAAAGTAGTAGATTAAATCAATGAA
66 ATACAAAGAAGTGGACCAAATCCGCCTTC-TGATGAGATACAGAG-AGTGGATTAAATCAATGAA
21335741 GCGGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
129 GCGGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21335806 TGAAACTTCAAACC
194 TGAAACTTCAAACC
* * * *
21335820 CCCATCTACCTGATAAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATATTCCTAATGAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAG
* * ** * *
21335885 ATATAAAGAAGTTGACCAAATTTGCCTTCCTAATGAGATACAGAGAAGTGGATTAAATAAATG-A
66 ATACAAAGAAGTGGACCAAATCCGCCTT-CTGATGAGATACAGAG-AGTGGATTAAATCAATGAA
* * * * * ** *
21335949 TCCG--A---TCCTCATGAGATACATAGAAGTAGATTAAATCAATGAAGCAAAGCTCAATATGAG
129 GCGGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
21336009 TGAAACTTCAAACC
194 TGAAACTTCAAACC
* * * * *
21336023 TCCATCTTTCTAATGAGATACAAAGAAGTGGGTCAAAGCATTAAAGCAGTCATCTTCCTGATGAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAG
* * *
21336088 ATACAGTA-AAGTGGATCAAATCCGCCTGTCTGATAAGATACAGAGAGGTGGATTAAATCAATGA
66 ATACA-AAGAAGTGGACCAAATCCGCCT-TCTGATGAGATACAGAGA-GTGGATTAAATCAATGA
* * *
21336152 AGCGGTCATTTTCCTGATAAGATACAGATAAGTAGGCCAAATCAATGAAGCAAAGC-CTAATGTG
128 AGCGGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTC-AATGTG
*
21336216 AGTGAAAGTTCAAACC
192 AGTGAAACTTCAAACC
* * * * * *
21336232 TCCATCTTCCTAATGAGATACAAAGAAGTAGGTCAAAACAATAAAGTGGTCATCTTCTTGATGAG
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAG
** * * **
21336297 ATACAAAGAAGTGGACCAAATTTGCCATCCGGATGAGATACAGAGATGTCAATTAAATCAATGAA
66 ATACAAAGAAGTGGACCAAATCCGCC-TTCTGATGAGATACAGAGA-GTGGATTAAATCAATGAA
* * * * *
21336362 GCGATCATCTTCCTAATGAGATACAGAGAAGTAGATCAAATCAATGAAGCAAAACTCAATGTGAG
129 GCGGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAG
*
21336427 TGAAACTTTAAACC
194 TGAAACTTCAAACC
* *
21336441 CCCATCTTCTTGATGAGATACATAGAAGTGGGTCAAA
1 CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAA
21336478 TAGATACATG
Statistics
Matches: 556, Mismatches: 88, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
202 1 0.00
203 167 0.30
204 5 0.01
206 2 0.00
208 5 0.01
209 373 0.67
210 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (207 bp):
CCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGCAATAAAGCGGTCATCTTCCTGATGAG
ATACAAAGAAGTGGACCAAATCCGCCTTCTGATGAGATACAGAGAGTGGATTAAATCAATGAAGC
GGTCATTTTCCTAATAAGATACAGAGAAGTAGACCAAATCAATGAAGCAAAGCTCAATGTGAGTG
AAACTTCAAACC
Found at i:21337721 original size:43 final size:43
Alignment explanation
Indices: 21337547--21337719 Score: 208
Period size: 43 Copynumber: 4.0 Consensus size: 43
21337537 TTTGTTAATG
* *
21337547 TTAGTGGTGTTTGTGGGAAAAGCGCCGCTAAAAACCATGTCTT
1 TTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTCTT
* *
21337590 TTAGCAGG-GTTTGTGAG-AAAGCGCCGCTAAAGACCATGTCTT
1 TTAG-TGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTCTT
* * *
21337632 TTAGTAGCGTTTGTGGGAAAAGTGCCGCTAAAGAACATGGT-TT
1 TTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCAT-GTCTT
** *
21337675 TTAGTGGCGTTTGTGGGAAAAGCGCCATTAAAGATCATGCTCTT
1 TTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATG-TCTT
21337719 T
1 T
21337720 AGCGGCGCTT
Statistics
Matches: 111, Mismatches: 13, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 37 0.33
43 66 0.59
44 7 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
TTAGTGGCGTTTGTGGGAAAAGCGCCGCTAAAGACCATGTCTT
Found at i:21348467 original size:41 final size:40
Alignment explanation
Indices: 21348418--21348519 Score: 111
Period size: 38 Copynumber: 2.6 Consensus size: 40
21348408 TTCGACCTCG
** *
21348418 AGTCGATGAGACACTGGGTGTCATTATTTTACTTCGGATA
1 AGTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATA
* * *
21348458 GATTCGATGAGATACT-GG-GT-ACCACTTTACTTCGGCTA
1 -AGTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATA
*
21348496 AGCCGATGAGACACTGGGTGTCAC
1 AGTCGATGAGACACTGGGTGTCAC
21348520 TTTATTGCTT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
37 12 0.24
38 16 0.33
39 4 0.08
40 4 0.08
41 13 0.27
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (40 bp):
AGTCGATGAGACACTGGGTGTCACCACTTTACTTCGGATA
Found at i:21350700 original size:21 final size:20
Alignment explanation
Indices: 21350670--21350708 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
21350660 TAGTTCTAAA
*
21350670 TTTTTATATTATTTCAATCG
1 TTTTTATATTAATTCAATCG
21350690 TTTTATATATTAATTCAAT
1 TTTT-TATATTAATTCAAT
21350709 TTTTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTTTATATTAATTCAATCG
Found at i:21350712 original size:19 final size:19
Alignment explanation
Indices: 21350670--21350715 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
21350660 TAGTTCTAAA
*
21350670 TTTTTATATTATTTCAATC
1 TTTTTATATTAATTCAATC
21350689 GTTTTATATATTAATTCAAT-
1 -TTTT-TATATTAATTCAATC
21350709 TTTTTAT
1 TTTTTAT
21350716 TTTTATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.12
19 4 0.17
20 4 0.17
21 13 0.54
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTTATATTAATTCAATC
Found at i:21350848 original size:24 final size:27
Alignment explanation
Indices: 21350800--21350848 Score: 77
Period size: 24 Copynumber: 1.9 Consensus size: 27
21350790 TCTAATCTTC
21350800 ATTTAATAAGAATTATAAAAATATAAT
1 ATTTAATAAGAATTATAAAAATATAAT
21350827 ATTTAAT-A-AATTA-AAAAATATA
1 ATTTAATAAGAATTATAAAAATATA
21350849 TAAAATCACG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 5 0.23
26 1 0.05
27 7 0.32
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
ATTTAATAAGAATTATAAAAATATAAT
Found at i:21353603 original size:31 final size:31
Alignment explanation
Indices: 21353560--21353637 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
21353550 TGTTAGGCCA
*
21353560 TGTGAGCCACACATGCCAACCAAGTAGGTCG
1 TGTGAGCCACACAAGCCAACCAAGTAGGTCG
* * **
21353591 TGTGGGCCACACAAGCCATCCAAGTAGGAAG
1 TGTGAGCCACACAAGCCAACCAAGTAGGTCG
*
21353622 TGTGAACCCACACAAG
1 TGTG-AGCCACACAAG
21353638 TGTGTGAGCC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 30 0.77
32 9 0.23
ACGTcount: A:0.32, C:0.28, G:0.26, T:0.14
Consensus pattern (31 bp):
TGTGAGCCACACAAGCCAACCAAGTAGGTCG
Found at i:21354166 original size:22 final size:22
Alignment explanation
Indices: 21354132--21354186 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
21354122 AGGAGTTTGA
*
21354132 ATCTGTATCTGATATACTCTGC
1 ATCTATATCTGATATACTCTGC
* * *
21354154 ATCTATATTTGATATGCTCTGT
1 ATCTATATCTGATATACTCTGC
*
21354176 ATCTGTATCTG
1 ATCTATATCTG
21354187 TCTCTGATAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.15, T:0.45
Consensus pattern (22 bp):
ATCTATATCTGATATACTCTGC
Found at i:21355788 original size:52 final size:51
Alignment explanation
Indices: 21355713--21355826 Score: 140
Period size: 52 Copynumber: 2.2 Consensus size: 51
21355703 AATGGCCGTG
** *
21355713 AAATGGAGAAATAGGAAACATTTGGAAATGGTTATGATTTTCTCAAAAAATGA
1 AAATGGA-AAATAGGAAACATTTGGAAATGAATATGACTTTCTC-AAAAATGA
* * * *
21355766 AAATGGAAAATTGGAATCATTTGGAAATGAATATGGCTTTCTCCAAAATGA
1 AAATGGAAAATAGGAAACATTTGGAAATGAATATGACTTTCTCAAAAATGA
21355817 AAAT-GAAAAT
1 AAATGGAAAAT
21355827 GGCTTGAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
50 6 0.11
51 11 0.20
52 30 0.56
53 7 0.13
ACGTcount: A:0.46, C:0.07, G:0.19, T:0.28
Consensus pattern (51 bp):
AAATGGAAAATAGGAAACATTTGGAAATGAATATGACTTTCTCAAAAATGA
Done.