Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 108 of 163
Found at i:30600269 original size:3 final size:3
Alignment explanation
Indices: 30600261--30600315 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
30600251 TCGCTACAAA
30600261 TTC TTC TTC TTC TTC TT- TTC TTC TTC TTC TT- TTC TTC TTC TCTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC
30600305 TTC -TC TTC TTC
1 TTC TTC TTC TTC
30600316 CTCCTCTTCC
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
2 6 0.12
3 39 0.81
4 3 0.06
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:30600281 original size:14 final size:14
Alignment explanation
Indices: 30600264--30600315 Score: 86
Period size: 14 Copynumber: 3.6 Consensus size: 14
30600254 CTACAAATTC
30600264 TTCTTCTTCTTCTT
1 TTCTTCTTCTTCTT
30600278 TTCTTCTTCTTCTT
1 TTCTTCTTCTTCTT
30600292 TTCTTCTTCTCTCTT
1 TTCTTCTTCT-TCTT
*
30600307 CTCTTCTTC
1 TTCTTCTTC
30600316 CTCCTCTTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
14 24 0.67
15 12 0.33
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
TTCTTCTTCTTCTT
Found at i:30600283 original size:17 final size:17
Alignment explanation
Indices: 30600261--30600315 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
30600251 TCGCTACAAA
30600261 TTCTTCTTCTTCTTCTT-
1 TTCTTCTTCTTCTT-TTC
30600278 TTCTTCTTCTTCTTTTC
1 TTCTTCTTCTTCTTTTC
*
30600295 TTCTTCTCTCTTCTCTTC
1 TTCTTCT-TCTTCTTTTC
30600313 TTC
1 TTC
30600316 CTCCTCTTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
16 2 0.06
17 21 0.60
18 12 0.34
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCTTCTTCTTCTTTTC
Found at i:30600324 original size:17 final size:17
Alignment explanation
Indices: 30600261--30600324 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 17
30600251 TCGCTACAAA
* * *
30600261 TTCTTCTTCTTCTTCTT
1 TTCTTCCTCCTCTTCTC
* * *
30600278 TTCTTCTTCTTCTTTTC
1 TTCTTCCTCCTCTTCTC
30600295 TTCTT-CT-CTCTTCTC
1 TTCTTCCTCCTCTTCTC
30600310 TTCTTCCTCCTCTTC
1 TTCTTCCTCCTCTTC
30600325 CTCAACACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
15 11 0.28
16 3 0.08
17 26 0.65
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (17 bp):
TTCTTCCTCCTCTTCTC
Found at i:30613670 original size:21 final size:21
Alignment explanation
Indices: 30613624--30613671 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
30613614 AAATAGGTAA
*
30613624 CATTGTCAACGCATTTGGATT
1 CATTGTCAACGCATTTGGACT
*
30613645 CATTGTCAACGCAATTTGTACT
1 CATTGTCAACGC-ATTTGGACT
30613667 -ATTGT
1 CATTGT
30613672 ACTGAAACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (21 bp):
CATTGTCAACGCATTTGGACT
Found at i:30625865 original size:3 final size:3
Alignment explanation
Indices: 30625857--30625887 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
30625847 AATAAAGATG
*
30625857 AAT AAT AAT AAT AAT AAT GAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
30625888 TGGGATCCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:30627886 original size:12 final size:12
Alignment explanation
Indices: 30627867--30627899 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
30627857 CTGCACAATG
30627867 CTTCTTCTTCCTC
1 CTTCTTCTT-CTC
30627880 C-TCTTCTTCTC
1 CTTCTTCTTCTC
30627891 CTTCTTCTT
1 CTTCTTCTT
30627900 GCATTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.21
12 14 0.74
13 1 0.05
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (12 bp):
CTTCTTCTTCTC
Found at i:30636213 original size:2 final size:2
Alignment explanation
Indices: 30636206--30636249 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
30636196 CAATAAGTAA
*
30636206 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30636248 AT
1 AT
30636250 GTTCTTTCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30638455 original size:210 final size:209
Alignment explanation
Indices: 30637870--30638734 Score: 787
Period size: 210 Copynumber: 4.1 Consensus size: 209
30637860 GGCAATGGGA
* * * * * * ** * **
30637870 AGAAGCAACAAGCTTGCTCAATAGAATGATGAATGAAGGAGTCTATCCAAATGTTGTGACTTTCA
1 AGAAGCAACAAGCTTGCTTAGTAGGATGTTGAATG-AGGAGTCCAGCCTGATGTGGAAACTTT-A
* * *** * * *
30637935 A-TTCTTTAATCAATGCTTTATGCAAGGAAAAGAGGACTTCGGAAGCCTTTACCGTGTTGGAATT
64 AGTTCTTTAATCAATGCTTTGTGCAAGGAAAAGAAGACTGAAGAAGCCATTACCATGTTGGAACT
* * * *
30637999 AATGA-TACAGAGAAATGTAAAACCTGACGTTGTCACATACAATTGTTTCATACAT-GATTTTTG
129 AATGAGT-CAGAGAAATGTAAAACCTGACATTGTCACCTACAATTGTTTAATACATGGA-TTGTG
* * *
30638062 CAGTTCGGGTAAATG-GAC
192 CAATTCAGATAAATGTG-C
* * * * * * ** * * * * *
30638080 GGAAGCAACAACCATGCTCAATAGAATGAAGAATGAAGGAGTCCATCCTAATGTAGTAATTTTCA
1 AGAAGCAACAAGCTTGCTTAGTAGGATGTTGAATG-AGGAGTCCAGCCTGATGTGGAAACTTT-A
* *
30638145 A-TTCTTTAATCAATGCTTTGTGCAAGGAAAAGAGGACTGAAGTAGCCATTACCATGTTGGAACT
64 AGTTCTTTAATCAATGCTTTGTGCAAGGAAAAGAAGACTGAAGAAGCCATTACCATGTTGGAACT
** *
30638209 AATGAGTCAGAGAGGTGTAAAACCTGACATTGTCACCTACAATTGTTTAATACGTGGATTGTGCA
129 AATGAGTCAGAGAAATGTAAAACCTGACATTGTCACCTACAATTGTTTAATACATGGATTGTGCA
30638274 ATTCAGATAAATGTGC
194 ATTCAGATAAATGTGC
* * *
30638290 AGAAGCCACAAGCTTGTTTAGTAGGATGTTGAATGGAGGAGTCCAGCCTGATATGGAAACTTTAA
1 AGAAGCAACAAGCTTGCTTAGTAGGATGTTGAAT-GAGGAGTCCAGCCTGATGTGGAAACTTTAA
* * * *
30638355 GTTATTTAATCAATGCTTTGTGCAAGGAAAACAAGAATGAAGAAGCCATTAGCATGTTGGAACTA
65 GTTCTTTAATCAATGCTTTGTGCAAGGAAAAGAAGACTGAAGAAGCCATTACCATGTTGGAACTA
* ** *
30638420 CTGAGTCAGAGAAATGTAAAACCTGACATTGTCACCTACTGCTT-TTTAATA-ATTGGATTGTGG
130 ATGAGTCAGAGAAATGTAAAACCTGACATTGTCACCTAC-AATTGTTTAATACA-TGGATTGTGC
* * * *
30638483 AGTTTAGGTAATTGTGC
193 AATTCAGATAAATGTGC
** * ** *
30638500 AGAAGTGACTAGCTTATTTAGTAGGATGTTGAAT--GGAGTCCAGCCTGATGTGGAAACCTTAAG
1 AGAAGCAACAAGCTTGCTTAGTAGGATGTTGAATGAGGAGTCCAGCCTGATGTGGAAACTTTAAG
* * * * * * *** *
30638563 CTCTTTAATCAATGCTTTGAGCAAAGAAAAAAAGATTGAAGAAGCCATTACCTTGTACAAATTAA
66 TTCTTTAATCAATGCTTTGTGCAAGGAAAAGAAGACTGAAGAAGCCATTACCATGTTGGAACTAA
* * * * * * * *
30638628 TGATTCAGAGAGATCTGAAACCAGACATCGTCACCTACAGTTGTTTAATACATGGATTATGCAAT
131 TGAGTCAGAGAAATGTAAAACCTGACATTGTCACCTACAATTGTTTAATACATGGATTGTGCAAT
* *
30638693 TCAGGA-CAATGTGG
196 TCA-GATAAATGTGC
*
30638707 AGAAGCAACAAGCTTGCTTAGTAAGATG
1 AGAAGCAACAAGCTTGCTTAGTAGGATG
30638735 GTTGCTGAAG
Statistics
Matches: 544, Mismatches: 101, Indels: 23
0.81 0.15 0.03
Matches are distributed among these distances:
206 2 0.00
207 157 0.29
208 2 0.00
209 2 0.00
210 374 0.69
211 7 0.01
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (209 bp):
AGAAGCAACAAGCTTGCTTAGTAGGATGTTGAATGAGGAGTCCAGCCTGATGTGGAAACTTTAAG
TTCTTTAATCAATGCTTTGTGCAAGGAAAAGAAGACTGAAGAAGCCATTACCATGTTGGAACTAA
TGAGTCAGAGAAATGTAAAACCTGACATTGTCACCTACAATTGTTTAATACATGGATTGTGCAAT
TCAGATAAATGTGC
Found at i:30638900 original size:38 final size:38
Alignment explanation
Indices: 30638858--30638932 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
30638848 CGTGAAGCCG
* *
30638858 AATGAATTTACTTACAGGATAATGATTGAAGAGGTGTA
1 AATGAATTTACTCACAGGATAATGATCGAAGAGGTGTA
*
30638896 AATGAATTTACTCACAGGGTAATGATCGAAGAGGTGT
1 AATGAATTTACTCACAGGATAATGATCGAAGAGGTGT
30638933 GAAGCCATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (38 bp):
AATGAATTTACTCACAGGATAATGATCGAAGAGGTGTA
Found at i:30659349 original size:20 final size:21
Alignment explanation
Indices: 30659324--30659365 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
30659314 GCATTTAATA
*
30659324 TATTTATTCATTA-ATATTTT
1 TATTTATTCATGACATATTTT
*
30659344 TATTTATTTATGACATATTTT
1 TATTTATTCATGACATATTTT
30659365 T
1 T
30659366 TGCTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTATTCATGACATATTTT
Found at i:30661242 original size:9 final size:10
Alignment explanation
Indices: 30661219--30661248 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
30661209 ATGCCCCTCC
30661219 AAAAACATGG
1 AAAAACATGG
30661229 AAAAACATGG
1 AAAAACATGG
*
30661239 AAAAAAATGG
1 AAAAACATGG
30661249 GCAACACCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.63, C:0.07, G:0.20, T:0.10
Consensus pattern (10 bp):
AAAAACATGG
Found at i:30675386 original size:121 final size:121
Alignment explanation
Indices: 30675239--30675480 Score: 466
Period size: 121 Copynumber: 2.0 Consensus size: 121
30675229 AACCTTATGG
30675239 TGAAACATTGTCTCATATGTCTAGTAATTGATTGATAAGTGAGATTTTTGTATAGGATGTTAAGT
1 TGAAACATTGTCTCATATGTCTAGTAATTGATTGATAAGTGAGATTTTTGTATAGGATGTTAAGT
30675304 TGTACATTTAGCTAGTTGACCAACCATAACAATTTTCTTTCCTAACTTCTTTAACC
66 TGTACATTTAGCTAGTTGACCAACCATAACAATTTTCTTTCCTAACTTCTTTAACC
*
30675360 TGAAACATTGTCTCATATGTCTAGTAATTTATTGATAAGTGAGATTTTTGTATAGGATGTTAAGT
1 TGAAACATTGTCTCATATGTCTAGTAATTGATTGATAAGTGAGATTTTTGTATAGGATGTTAAGT
*
30675425 TGTACATTTAGCTAGTTGACCAACCATAACCATTTTCTTTCCTAACTTCTTTAACC
66 TGTACATTTAGCTAGTTGACCAACCATAACAATTTTCTTTCCTAACTTCTTTAACC
30675481 AGATTGTATT
Statistics
Matches: 119, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 119 1.00
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.41
Consensus pattern (121 bp):
TGAAACATTGTCTCATATGTCTAGTAATTGATTGATAAGTGAGATTTTTGTATAGGATGTTAAGT
TGTACATTTAGCTAGTTGACCAACCATAACAATTTTCTTTCCTAACTTCTTTAACC
Found at i:30685186 original size:98 final size:97
Alignment explanation
Indices: 30685012--30685202 Score: 240
Period size: 98 Copynumber: 2.0 Consensus size: 97
30685002 TAATGATTAG
* * * *
30685012 AAGCCATTGTTGTTGGGCAACCTAGGGTGGTAAAATGCACATATTCTAGTAGTCATCATTGCTAG
1 AAGCCATCGTTGTTGGCCAACCCAGGGTGGTAAAATGCACATATTCTAATAGTCATCATTGCTAG
* *
30685077 ACAACCTGAGATTACAGAGTAAATAGATTGTGA
66 ACAACCTGAGATGACAAAGT-AATAGATTGTGA
** * * *
30685110 AAGCCATCGTTGTTGGCCAACCCAGGGTGGTAGTATGTACATGTTCTAATAGTCATCATTGTTAG
1 AAGCCATCGTTGTTGGCCAACCCAGGGTGGTAAAATGCACATATTCTAATAGTCATCATTGCTAG
**
30685175 GTAA-CTCGAGATGACAAAGTAATAGATT
66 ACAACCT-GAGATGACAAAGTAATAGATT
30685203 CGTGTATCTG
Statistics
Matches: 79, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
97 10 0.13
98 69 0.87
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (97 bp):
AAGCCATCGTTGTTGGCCAACCCAGGGTGGTAAAATGCACATATTCTAATAGTCATCATTGCTAG
ACAACCTGAGATGACAAAGTAATAGATTGTGA
Found at i:30692568 original size:9 final size:9
Alignment explanation
Indices: 30692553--30692591 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
30692543 TTAATTTTCG
30692553 AATTCGAAT
1 AATTCGAAT
*
30692562 TATTCGAAT
1 AATTCGAAT
30692571 AATTCGAAT
1 AATTCGAAT
**
30692580 AAACCGAAT
1 AATTCGAAT
30692589 AAT
1 AAT
30692592 ACTATATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (9 bp):
AATTCGAAT
Found at i:30692780 original size:58 final size:58
Alignment explanation
Indices: 30692715--30692834 Score: 197
Period size: 58 Copynumber: 2.1 Consensus size: 58
30692705 ACCCATCAAC
* *
30692715 AAACTAAACCCAAATATTTTTAAATCCAAATATAATTTCATTCTTCAAA-AACACTTAT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCT-AAATAACACTTAT
*
30692773 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTTATTCCTAAATAACACTTAT
1 AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTTAT
30692831 AAAC
1 AAAC
30692835 AATTCTTTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
57 3 0.05
58 55 0.95
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.33
Consensus pattern (58 bp):
AAACTAAACCCAAATATTTTTAAACCCAAATATAATTTCATTCCTAAATAACACTTAT
Found at i:30693723 original size:12 final size:12
Alignment explanation
Indices: 30693706--30693742 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
30693696 TAAGTTATTT
30693706 ACATTAAATATC
1 ACATTAAATATC
*
30693718 ACATTAAATGTC
1 ACATTAAATATC
*
30693730 ACATCAAATATC
1 ACATTAAATATC
30693742 A
1 A
30693743 TGTCACATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (12 bp):
ACATTAAATATC
Found at i:30699982 original size:3 final size:3
Alignment explanation
Indices: 30699974--30700011 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
30699964 TGTTTAGGAA
30699974 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
30700012 ATTTATAGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:30708737 original size:6 final size:6
Alignment explanation
Indices: 30700439--30708728 Score: 6162
Period size: 6 Copynumber: 1394.0 Consensus size: 6
30700429 CAGCAGCAGC
* *
30700439 CGTAGT CGTAGC CGTCGT CGTAGT CGTAGT CGTAGT C---GT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30700484 CGTAGT CGTAGT CGTCGT CGTAGT AGTAGT CGTAGT AGTTGT AGCAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30700532 CGTA-- -GTAGT CGTAGT CGTAGT AGTCGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * ** **
30700577 AGTAGT CGTAGT AGTAGT CGTAGT AATAGT CGTAGT CGTAGT AATAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30700625 CGTAGT AGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGC CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30700673 CGTAGT CGTAGT CGTCGT AGTAGT CGTAGT AGTAGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30700721 CGTAGT CGTAGT AGTAGT AGCAGT CGTAGT CGTAGT CGTAGT CGTAGC
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30700769 CGTAGT AGTAGT AGTAGT CGTAGT CGTAGT CGTAGC CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30700817 CGTAGT CGTAGT CGTAGC CGTAGC CGTAGC CGTAGT CGTAGT CGTAGC
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30700865 CGTAGT CGTAGT CGTAGT AGTAGT AGTAGT CGTAGT TGTAGT CGTAGC
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30700913 CGTAGT CGTAGT CGTAGT CGTAGT CGTAAT CGTAGC CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30700961 CGTAGT CGTAGT CGTAGT CGTAAT CGTAGT AGTAGTCCT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAG---T CGTAGT CGTAGT
* * * *
30701012 AGTAGT AGTAGT CGTAGT CGTAGC CGTAGT CGTAGT CGTAGT GGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30701060 CGTAGT CGTAGC CGTAGC CGTAGC CGTAGT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30701108 AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
30701156 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30701204 C---GT CGTAGT CGTAGT CGTAGT CGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30701249 AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30701297 AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30701345 AGTAGT CGTAGT CGTAGT AGTAGT CGTAGT CGTAGT CGTAAT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30701393 CGTAGT CGTAGT AGTAGT CATAGCAG CAGTAGT AGTAGT CGTAAT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30701444 CGTAGT CGGAGT AGTAGT AGTAGA AGTAGT CGTA-- -GTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30701489 AGTAGT CGTAGT AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30701537 AGTAGT CGTAGT CGTAGT CGTAGT CGTAGT AGTAGT TGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30701585 AGTAGT CATAGCAG CAGTAGT AGTAGT CGTAAT CGTAGT CGTAGA CGGAGT
1 CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30701636 AGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGGAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30701684 AGTAGT CGTAGT CGTAGT AGTAGT CATAGT AGCAGTAGT AGTAGT CGTAAT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT --C-GTAGT CGTAGT CGTAGT
*
30701735 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CATAGT CGTAGT CATAGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT
* * * * *
30701786 AGTAGT TGTGGT CGCAGT CGTAGG CGTAGT CGTAGT C---GT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30701831 CGTAGT CGTAGT AGCAG- CAGTAGT AGTAGT CGTAGT AGTAGT CATAGT
1 CGTAGT CGTAGT CGTAGT C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30701879 AGTAGCAG CAGTAGT AGTAGT CGTAGT CGTAGT AGTAGT AC-TAGT CGTAGT
1 CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT
* * *
30701930 CGTAGT CGTAGT CGTAGT CGTAAT CGTAGT CGTAATGGT AGTAAT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGT-A--GT CGTAGT CGTAGT
* * * * * * * *
30701981 AGTAGT TGTTGT TGTAGT CGTTGT TGTCGT AC-TAGT CCTAGT CGTA--
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT CGTAGT
* *
30702027 -GTAGT AGTAGT CGTAGT CGTAGT CGTAGT CGTCGT CGTA-- -GTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30702071 AGTAGT AGTAGT CGTAGT AGTTA-T CGTA-- C-TAGT CCTAGT CATAGT
1 CGTAGT CGTAGT CGTAGT CG-TAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * ** * * * * * * *
30702116 CATAGT AGTCTT AGTAGT AGTAGT CGTAGT AGTCGT AGTAGT AGTCGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30702164 CGTAGT CGTAGT CGTAGT CGTGTAGT CGTAGT AGTTGT CGTA-- C-TAGT
1 CGTAGT CGTAGT CGTAGT C--GTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30702211 CCTAGT CGTAGT CGTA-- -GTAGT CGTAGT AGTAGT CGTA-- -GTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
*
30702253 CGTAGT AGTAGT CGTAGAATT CGTAGT C---GT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAG---T CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
*
30702301 CGTAGT CGTAGT CGTAGT CGTAGT AGTAGT CGTAGT C---GT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30702346 CGTAGT CGTAGT CGT-GT AGTCGT AGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30702393 AGTAGT AGTAGT AGTAGT CGTAGA CGTAGT CGTAGA CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30702441 CGTAGT CGTAGC CGTAGT CGTAGT CGTAGC CGTAGT CGTAGC CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30702489 CGTAGT AGTAGT AGTAGT CGTAGT CGTAGT CGTAGT CAG-AGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C-GTAGT CGTAGT
* * * * *
30702537 CGTAGT CGTAGT AGTAGT CATAGCAG CAGTAGT AGTAGT CGTAAT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT
* * *
30702588 CGTAGT CGTAGT CGTAGT CATAGT CGTAGT CATAGTAGT AGTAGT CGTGGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT CGTAGT CGTAGT
* *
30702639 CGTAGT CGTAGG CCTAGT CGT--T -GTAGT CGTAGT CGTAGT CGTA--
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30702682 -GTAGT AGTAGT CGTAGT CATAGT AGTAG- C--AGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30702726 CGTAGT AGTAGT CGTCGT AGTAGT CATAGT CGTAGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30702774 CGTAAT CGTAGT CGTAGT CGTAGT CGTAGT CATAGTAGT AGTAGT CGTGGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT CGTAGT CGTAGT
* * * * * * *
30702825 CGTAGT CGTAGG CGTAGT CATAGT AGTAGT AGTCGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30702873 CGTAGT AGTAGT CGTAGT CGTAGT CGTAGT AGTAGT AC-TAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT
* * ** * * *
30702921 CGTAGT CGTAAT CGTAGT CGTAGT GGTAGT AATCGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30702969 AGTAGT TGTAGT CGTAGT TGTCGT AC-TAGT CCTAGT CGTAGTAAT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT CGTAG---T CGTAGT
* * * * * * *
30703020 CGTAGT CGTAGT CGTAGT CGTCGC CGTAGT AGTAGT AGAAGT AGTCGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30703068 AGTAGT CGTAGT AGTTA-T CGTA-- C-TAGT CCTAGT CCTAGT CATAGTAGT
1 CGTAGT CGTAGT CG-TAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT
* * * * * * * * *
30703116 CTTAGT AGTAGT AGTAGT AGTAGT AGTAAT CGTAGT AGTCGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30703164 AGTCGT CGTAGT CGTAGT CGTAGT CGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30703212 CATAGT CGTAGT CGTA-- C-TAGT AGCAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30703257 CGTAGT AGTAGT AC-TAGT CGTAGT CGTAGT CGTAAT CGTAGT CGTAGT
1 CGTAGT CGTAGT -CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* ** * * * * * * * *
30703305 GGTAGT AATCGT AGTAGT AGTTGT TGTAGT CGTAGT AGTAGT AGTAAT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30703353 CGTAGT AGAAGTAGT AGTAGT CGTAGT AGTAAT CGTA-- -GTAGT AGTAGT
1 CGTAGT ---CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30703401 CGTAGT CGTAGT C---GT CGTAGT AGTAGT AGTAGT CATAGT AGTTA-T
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CG-TAGT
* * *
30703446 CGTA-- C-TAGT CCTAGT CGTAGT CGTAGT AGTAGT AGTAGT AC-TAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT
** * *
30703491 TATAGT AGTAGT CGTAGT AGTAGT C---GT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30703536 CGTGTAGT CGTAGT AGTTGT CGTA-- C-TAGT CCTAGT CGTAGT CGTA--
1 C--GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30703581 -GTAGT CGTAGT AGTAGT AGTAGT CGTA-- -GTAGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30703625 AGTAGT AGTAGT AGTAGT GGTAGT AGTCGT AGTCGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30703673 CGTGTAGT CGTAGT TGTAGTAAT CGTAGT CGTAGT TGTAGT AGTACT TGTAGT
1 C--GTAGT CGTAGT CGTAG---T CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30703726 AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30703774 CGTAGT CGTAGT AGTAGT CGTAAT CGTAAT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30703822 AGTAGT CATAGT CGTAGT CGTAGT AGTAGCAG CAGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT
* * *
30703873 AGTAGT CGTAGT CGTAGT CGTAGT AGTAGT AC-TAGT CGTAGT TGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT CGTAGT
* * * *
30703921 CGTAGT CGTAAT CGTAGT CGTAGT -G--GT TGTAAT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30703966 AGTAGT TGTAGT CGTAGT AGTAGT AGTAAT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30704014 AGTAGT CGTA-- -GTAGT AGTAGT CATAGT AGTAAT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30704059 AGTAGT CGTAGT CGTAGT CGTAGT CATAGT CGTAAT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * ** * * ** * *
30704107 AGTAGT AGTAGT AGTCGT AATAGT AGTTGT AATAGT GGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30704155 AGTAGT AGTAGT CGTAAT AGTAGT CGTAGT CGTAGT AGCAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30704203 CGTAAT CGTTGT CGTAGT CGTAGT CGTAAT CGTAGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30704251 CGTAGT CGTAGT CGTAGT AGTAGCAG CAGCAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT
* * *
30704302 AGTAGT CGTGGT CGTAGT AGTAGT AC-TAGT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30704350 TGTAAT CGTAGT CATAGT -G--GT TGTAAT CGTAGT AGTAGT TGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30704395 AGTTGT AGTCGT AGTAGT AGTAGT CGTTGT TGTAGT AC-TAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT
* * * * ** * *
30704443 AGTCGT AGTCGT CGTAGT CGTAGT CGTAGT AATCA-T AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGT-AGT CGTAGT CGTAGT
* * * * * * *
30704491 AC-TATT AGTAGT TGTAGT CGTAGT AGTAGT AGTAAT CGTAGT AGTAGT
1 -CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * * * *
30704539 AGTAGT AGTCGT AGTTGT AGTAGT CGTAGT TGTAGT CATCGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30704587 TGTAGT AGTAGT CGTAGT AGTTA-T CGTA-- C-TAGT CCTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CG-TAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30704632 CGTAGT AGTCGT AGTAGT AGTACT AGTAGT CATAGT AGTAGT CATTGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT
* * *
30704683 CGTAGT CGTAGT CGTGTAGT CGTAGT AGTTGT CGTA-- C-TAGT CCTAGT
1 CGTAGT CGTAGT C--GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
** * * *
30704730 CGTAGT CGTA-- -GTAGT CGTAGT AATAGT AGTAAT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30704775 CGTA-- -GTAGT CGTAGT AGTAGT AGTAGT AGTAGT CGTAGT CGTCGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30704820 AGTCGT CGTAGT CGTAGT CGT-GT AGTCGT AGTAGT AGTAAT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30704867 CGTA-- -GTAGT AGTAGT AGTAGT CGTAGT CGTAGT CGTTGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30704912 CATAGT AGTAGT AGTAGT CGTAGT CGTAGT CATAGT CGTAAT CGTGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C--GTAGT
* * * *
30704962 CGTAGT AGTTGC CGTA-- C-TAGT CCTAGT CGTAGT CGTA-- -GTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * **
30705004 CGTAGT CGTAGT AGTAGT AGTAGT TGTAGT CGTAGT CGTAAC CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30705052 CGTAGT CGTAGT AGTAGT CGTAGT AGTAGT TGTAGTAAT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAG---T CGTAGT CGTAGT
* * * * *
30705103 CGT--T -GTTGT CGTAGA CGTAGT CGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30705148 CGTA-- -GTAGT AGTAGT CGTAGT CGTAGT CGTAGT CGTCGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30705193 CGTAGT AGTTGT CATA-- C-TAGT CCTAGT CGTAGT CGTAGT AGTCGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
** * * * *
30705238 AATAGT AGTAGT AGTAGT CGTAATAGT CATAGT AGTAGT C--A-T CGTAGT
1 CGTAGT CGTAGT CGTAGT CG---TAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30705286 CGTAGT CGTAGT CGTAGT CGTGTAGT CGTAGT AGTTGT CGTA-- C-TAGT
1 CGTAGT CGTAGT CGTAGT C--GTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30705333 CTTAGT GGTAGT CGTA-- -GTAGT AGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * ** *
30705378 CGTAGT AGTAGT AGTAGT CGTAGT AGTTTT CGTA-- C-TAGT CCTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30705423 CGTAGT CGTA-- -GTAGT CGTAGT AGTAGT AGTCGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30705468 CGTAGT AGTCGT AGTAGT AGTCGT CGTAGT CGTGTAGT CGTAGT AGTTGACGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C--GTAGT CGTAGT CG-T-A-GT
* * * * * * *
30705521 AGTAGT CGTAGT AGTCGT AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30705569 AC-TAGT AGTAGT AGTAGT CGTAGT CGTAGT CGTAGT CGTAGT GGTAGT
1 -CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30705617 CATAGTAGT AGTAGT TGTAGT CGTAGT CGTAGT CATAGT CGTAAT CGTAGT
1 C---GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30705668 CGTAGT AGTA-- C-TAGT AC-TAGT TGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
** * * * * *
30705713 AATAGT CGTAGT AGTAGT AGTAGT AGTCGT AGTAGT CGTAGT AC-TAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT
* * * * * *
30705761 AGTAGT AGTAGT AGTAGT AGTAGT CGTCGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30705809 CGTA-- -GTAGT AGTAGT CGTAGT AGTTGT CGTA-- C-TAGT CTTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30705851 CGTAGT CGTAGT AGTCGT AGTAGT AGTAGT AGTTGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30705899 CGTAGT CGTAGC CGTAGT CGTAGT CGTAGT CGTAGC CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30705947 CGTAGTAAT CGTAGT CGTAGT C---GT CGTTGT CGTAGT CGTAGT CGTAAT
1 CGTAG---T CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30705995 AGTAGT AGTAGT AGTCA-T AGTAGT AGTAGT CGTAGT CGTAGT CGTCGT
1 CGTAGT CGTAGT CGT-AGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30706043 AGTAGT AGTAGT AGTAGT CATAGT AGTTGT CGTA-- C-TAGT CCTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30706088 CGTAGT CGTA-- -GTAGT CGTAGT AGTAGT CGTAGT AGTCA-T AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGT-AGT CGTAGT
* * * *
30706133 AGTCGT CGTAGT CGTAGT CGTAGT CGTGTAGT CGTAGT AGTTGT CGTA--
1 CGTAGT CGTAGT CGTAGT CGTAGT C--GTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30706181 C-TAGT CTTACT AGTAGT CGTAGT AGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* ** * * * *
30706228 AGTTTT CGTA-- C-TAGT CCTAGT CGTAGT CGTAGT AGTCGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * ** * * * *
30706273 CGTAGT AGTAGT CGTCGT AATCGT -GTAGT CGTAGT AGTTGA CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30706320 AGTAGT AGTCGT CGTAAT CGTGTAGT CGTAGT AGTTGA CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT C--GTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30706370 AGTAGT AGTAGT AGTAGT CGTAGT AGTCGT CGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * * * *
30706418 AGTAGT AGTAGT AGTAGT AGTAGT AGTCGT AGTACT TGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706466 CGTAGT GGTAGT GGTAGT CGTAGT CATAGTAGT AGTAGT TGTAGT CGTAAT
1 CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706517 CGTAGT CATAGT CGTAAT CGTAGT CGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * * * *
30706565 AGTAGT AGTAGT AGTAGT AGTAGT AGTAAT AGTCGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706613 AGTAGT CGTAGT AGTAGT CGTA-- -GTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706658 AGTAGT CGTAGT CGTAGT AGTAGT AGTAGT AGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30706706 AGTAGT CGTAGT CGTAGT AGTAGT CGTAGT CGTAGT CGTCGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706754 AGTAGT AGTAGT CGTAGT AGTTGT CGTA-- C-TAGT CCTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30706799 CGTAGT AGTCGT AGTAGT AGTAGT CGTAGT AGTAGT CGTAGT AGTCGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30706847 AGTAGT AGTCGT CGTAGT TGTAGT CGTAGT CGTAGT AGTCATTGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGT-A--GT CGTAGT
* * * *
30706898 CGTAGT AGTAGT CGTAAT CGTAGT CGAAGT CGTAAT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30706946 CGTAGT CGTA-- -GTAGT AGTAGT CGTGGT CGTAGT CGTAGG CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30706991 CATAGTAGT AGTAGT CGTAGT CGTAGT CGTAGT CATAGT CGTAGT CGTAGT
1 C---GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30707042 CGTAGT AGTAGT AGTAGT CGTAGT AGTAGT AGTAGT AGTAGT -G--GT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * ** *
30707087 AGTAGT AGTAGT CGTAGT AGTAGT CACAGT AG-ATGT CGTA-- C-TAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTA-GT CGTAGT CGTAGT
* * * * * * * *
30707132 CCTAGT CGTAGT TGTAGT AGTCGT AGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30707180 CGTAGT AGTAGT CGTAGT AGTAGT AGTAGT AGTCGT AGTCGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30707228 CGTTA-T CGT-GT AGTCGT AGTAGT AGTAAT CGTAGT CGTAGT AGTAGT
1 CG-TAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30707275 AGTAGT TGTAGT AGTAGT AGTAGT CGTAGT CGTAGT AGTAGT CGCAAT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30707323 CGTAAT CGTAGT CGTAGT CGTAGT AGTAGT CATAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30707371 AGTAGCAG CAGTAGT AGTAGT CGTAGT CGTAGT AGTAGT AC-TAGT CGTAGT
1 CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT -CGTAGT CGTAGT
* * * * * *
30707422 CGTAAT CGTAGT CGTAGT -G--GT TGTAAT CGTAGT AGTAGT AGTTGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30707467 TGTAGT AGTAGT AGTAGT AGTAAT CGTAGT CGTAGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30707515 CGTAGT AGTAGT --T-GT CATAGT CGTAAT CGT-GT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30707559 CGTAGT CGTAGT CGTAGT CATAGT CGTAAT CGTAGT CGTA-- -GTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30707604 AGTAGT AGTAGT CGTAGT AGTAGT TGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30707652 AGTAGT CGTAGT AGTAGT AGTAGT AGTAGT CGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * * *
30707700 CGTAGT AGCAGT CGTAGT AGTCGT AGTAGT AGTCGT CGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30707748 CGTAGT CGTAGT AGCAGT CGTAGT AGTCGT AGTAGT AGTCGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30707796 CGTAGT CGTAGT CGTAGT AGTAGCAG CAGTAGT AGTAGT AGTAGT CGTGGT
1 CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT
* * *
30707847 CGTAGT CGTAGG CGTAGT CATAGT CGTAGT CGTAGT CGTAGT CGTTGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30707895 AGTAGT CGTAGT CATAGT AGTAGCAA CAGTAGT AGTCGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT
* * * * * *
30707946 AGTAGT CGTCGT AGTAGT CATAGT CGTAGT CGTAGT AGTAGT CGTAAT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * *
30707994 CTTAGT AGTAGT CGTAGT TGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30708042 CGTAGT AGTAG- CAGCAGT TGTAGT AGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30708090 AGTAGT CGTAGT AGTAGT CGTCGT AGTAGT CATAGT CGTAGT CATAGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT
* * * * *
30708141 CGTAAT CTTAGT AGTAGT CGTAGT CGTAGT TGTAGT CATAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30708189 CGTAGT CGTAAT CTTAGT CGTAGT CGTAGT AGTAG- CAGCAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT C-GTAGT CGTAGT
* * *
30708237 AGTAGT CGTAGT CGTAGT TGTAGT CGTAGT CGTAGT CGTAAT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30708285 CGTAGT CGTAGT AGTAGCAG CAGTAGT AGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAG--T C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30708336 AGTAGT AGTAGT CGTAGT CGTAAT CGTAGT AGTAGT --T-GT CGTATT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30708381 CGTAGT CGTAGT CGTAAT CGTAGT CGTAGT AGTAGT AGTAGT AGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
*
30708429 CGTAGT CGTAGT CGTAGT CGTAGT CATAGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT C---GTAGT CGTAGT CGTAGT CGTAGT
* * * *
30708480 TGTAGT CATAGT CGTAAT CGTAGT CGTAGT CGTAGT CGTAGT TGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* *
30708528 CGTA-- -GTAGT AGTAGT CGTAGT AGTAGT CGTA-- -GTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * * * *
30708570 AGTAGT AGTAGT GGTAGT AGTAGT TGTAGT AGTAGT CGCAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * *
30708618 CGTAGT CGCAGT CGCAGT CGTAGT AGTAGT CGTAGT AGTAGT CGTAGT
1 CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
* * * * *
30708666 AGTAGT AGTAGT AGCAGTAGT AGTAGT GGTAGT AGTAGT CGTAGT CGTAGT
1 CGTAGT CGTAGT --C-GTAGT CGTAGT CGTAGT CGTAGT CGTAGT CGTAGT
30708717 CGTAGT CGTAGT
1 CGTAGT CGTAGT
30708729 AGTTGTAGTG
Statistics
Matches: 6819, Mismatches: 1108, Indels: 714
0.79 0.13 0.08
Matches are distributed among these distances:
3 157 0.02
4 27 0.00
5 66 0.01
6 6337 0.93
7 21 0.00
8 60 0.01
9 151 0.02
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34
Consensus pattern (6 bp):
CGTAGT
Found at i:30708746 original size:15 final size:15
Alignment explanation
Indices: 30700439--30708737 Score: 4897
Period size: 15 Copynumber: 557.4 Consensus size: 15
30700429 CAGCAGCAGC
**
30700439 CGTAGTCGTAGCCGT
1 CGTAGTCGTAGTAGT
* * *
30700454 CGTCGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30700469 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30700484 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30700499 CGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30700514 CGTAGTAGTTGTAG-
1 CGTAGTCGTAGTAGT
30700528 C--AGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30700541 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30700556 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30700568 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30700583 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
*
30700595 CGTA---GTAATAGT
1 CGTAGTCGTAGTAGT
*
30700607 CGTAGTCGTAGTAAT
1 CGTAGTCGTAGTAGT
* * *
30700622 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30700637 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30700655 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
*
30700673 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30700688 CGTAGTAGTCGTAGTAGT
1 C---GTAGTCGTAGTAGT
* * *
30700706 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30700721 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30700736 AGTAG-CAGTCGTAGT
1 CGTAGTC-GTAGTAGT
30700751 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30700763 CGTAGCCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30700778 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30700793 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
30700811 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30700823 CGTAGTCGTAGCCGTAGC
1 CGTAGTCGTA---GTAGT
*
30700841 CGTAG-C--CGTAGT
1 CGTAGTCGTAGTAGT
30700853 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
30700871 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30700886 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30700901 TGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
30700919 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30700931 CGTAGTCGTAATCGTAGC
1 CGTAGTCGT-A--GTAGT
*
30700949 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30700964 AGTCGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30700979 CGTAATCGTAGTAGT
1 CGTAGTCGTAGTAGT
* **
30700994 AGTCCTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701009 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30701024 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
30701042 CGTAGTCGTAGTGGTAGT
1 CGTAGTCGTA---GTAGT
*
30701060 CGTAGTCGTAGCCGTAGC
1 CGTAGTCGTA---GTAGT
*
30701078 CGTAGCCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30701096 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701111 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30701126 AGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30701144 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30701162 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30701177 AGTCGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30701192 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30701207 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30701225 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701240 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701255 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701270 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30701285 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701300 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30701315 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701330 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701345 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30701360 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30701375 CGTAGTCGTAATAGTAGT
1 CGTAGTCG---TAGTAGT
30701393 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701408 AGTCA-TAGCAGCAGTAGT
1 CGT-AGT--C-GTAGTAGT
*
30701426 AGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
*
30701444 CGTAGTCGGAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30701459 AGTAGTAGAAGTAGT
1 CGTAGTCGTAGTAGT
*
30701474 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30701489 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701504 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701519 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30701534 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30701549 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30701564 AGTAGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
30701579 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701591 CATAG-CAGCAGTAGT
1 CGTAGTC-GTAGTAGT
*
30701606 AGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
*
30701624 CGTAGACGGAGTAGTAGT
1 CGTAGTC---GTAGTAGT
30701642 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30701660 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * **
30701675 AGTCGGAGTAGTAGT
1 CGTAGTCGTAGTAGT
30701690 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30701705 AGTCA-TAGTAGCAGT
1 CGT-AGTCGTAGTAGT
* * * *
30701720 AGTAGTAGTCGTAAT
1 CGTAGTCGTAGTAGT
30701735 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30701753 CGTAGTCGTAGTCATAGT
1 CGTAGTCGTAG---TAGT
*
30701771 CGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
* *
30701786 AGTAGT--T-GTGGT
1 CGTAGTCGTAGTAGT
*
30701798 CGCAGTCGTAGGCGTAGT
1 CGTAGTCGTA---GTAGT
*
30701816 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
30701831 CGTAGTCGTAGTAG-
1 CGTAGTCGTAGTAGT
* *
30701845 CAGCAGTAGTAGTAGT
1 C-GTAGTCGTAGTAGT
30701861 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30701873 CATAGTAGTAGCAG-
1 CGTAGTCGTAGTAGT
*
30701887 C--AGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30701900 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30701915 AGTACTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30701930 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30701942 CGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
* * *
30701960 CGTAATGGTAGTAAT
1 CGTAGTCGTAGTAGT
30701975 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30701987 TGTTGTTGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30702002 TGTTGTCGTACTAGT
1 CGTAGTCGTAGTAGT
*
30702017 CCTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702032 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * * *
30702047 AGTCGTAGTCGTCGT
1 CGTAGTCGTAGTAGT
*
30702062 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702077 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702092 --TA-TCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30702104 CCTAGTCATAGTCA-T
1 CGTAGTCGTAGT-AGT
* *
30702119 AGTAGTCTTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702134 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702149 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
30702164 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30702176 CGTAGTCGT-GTAGT
1 CGTAGTCGTAGTAGT
*
30702190 CGTA---GTAGTTGT
1 CGTAGTCGTAGTAGT
* * **
30702202 CGTACTAGTCCTAGT
1 CGTAGTCGTAGTAGT
30702217 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30702232 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702244 CGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* * *
30702259 AGTAGTCGTAGAATT
1 CGTAGTCGTAGTAGT
*
30702274 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
30702289 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30702301 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30702316 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702331 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30702346 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30702361 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702375 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702390 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702405 AGTAGTCGTAGACGTAGT
1 CGTAGTCGT--A-GTAGT
*
30702423 CGTAGACGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30702441 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
30702459 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
* *
30702477 CGTAGCCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30702492 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702507 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30702522 AGTCAG-AGTAGTAGT
1 CGT-AGTCGTAGTAGT
30702537 CGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
* *
30702550 -GTAGTCATAGCAG-
1 CGTAGTCGTAGTAGT
*
30702563 C--AGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702576 CGTAATCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30702594 CGTAGTCGTAGTCATAGT
1 CGTAGTCGTAG---TAGT
*
30702612 CGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
*
30702627 AGTAGTCGT-G--GT
1 CGTAGTCGTAGTAGT
30702639 CGTAGTCGTAGGCCTAGT
1 CGTAGTCGTA-G--TAGT
* * *
30702657 CGTTGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30702672 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702687 AGTAGTCGTAGTCA-T
1 CGTAGTCGTAGT-AGT
*
30702702 AGTAGTAGCAGTAGTAGT
1 CGTAGT--C-GTAGTAGT
*
30702720 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702735 AGTCGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30702750 CATAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30702765 AGTAGTAGTCGTAAT
1 CGTAGTCGTAGTAGT
30702780 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30702798 CGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
*
30702813 AGTAGTCGT-G--GT
1 CGTAGTCGTAGTAGT
30702825 CGTAGTCGTAGGCGTAGT
1 CGTAGTCGTA---GTAGT
* *
30702843 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702858 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30702873 CGTAGTAGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30702891 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30702906 AGTACTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30702921 CGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
* *
30702939 CGTAGTGGTAGTAAT
1 CGTAGTCGTAGTAGT
*
30702954 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30702969 AGTAGTTGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30702984 AGTTGTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30702999 CCTAGTCGTAGTAAT
1 CGTAGTCGTAGTAGT
*
30703014 AGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30703026 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30703041 CGCCGTAGTAGTAGTAGA
1 ---CGTAGTCGTAGTAGT
*
30703059 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703074 CGTAGTAGT--TA-T
1 CGTAGTCGTAGTAGT
* * **
30703086 CGTACTAGTCCTAGT
1 CGTAGTCGTAGTAGT
* *
30703101 CCTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
* *
30703116 CTTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30703131 AGTAGTAGTAGTAAT
1 CGTAGTCGTAGTAGT
* *
30703146 CGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* *
30703161 AGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30703176 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30703191 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30703206 CGTAGTC--A-TAGT
1 CGTAGTCGTAGTAGT
*
30703218 CGTAGTCGTACTAGT
1 CGTAGTCGTAGTAGT
*
30703233 AGCAGTAGTAGTAGTAGT
1 --C-GTAGTCGTAGTAGT
30703251 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30703266 AGTACTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30703281 CGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
* *
30703299 CGTAGTGGTAGTAAT
1 CGTAGTCGTAGTAGT
* *
30703314 CGTAGTAGTAGTTGT
1 CGTAGTCGTAGTAGT
*
30703329 TGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* ** *
30703344 AGTAGTAATCGTAGT
1 CGTAGTCGTAGTAGT
* * *
30703359 AGAAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703374 CGTA---GTAGTAAT
1 CGTAGTCGTAGTAGT
*
30703386 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703401 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30703416 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30703428 AGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
*
30703443 --TA-TCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30703455 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30703470 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30703485 AC-TAGT--TA-TAGT
1 -CGTAGTCGTAGTAGT
*
30703497 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
*
30703510 -GTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30703524 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30703539 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703553 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30703565 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30703580 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
* *
30703593 -GTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30703607 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30703622 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30703637 AGTAGTGGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703652 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
30703667 CGTAGTCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30703681 CGTAGTTGTAGTAAT
1 CGTAGTCGTAGTAGT
*
30703696 CGTAGTCGTAGTTGT
1 CGTAGTCGTAGTAGT
*
30703711 AGTAGTACTTGTAGTAGT
1 CGTAGT-C--GTAGTAGT
* *
30703729 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703744 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30703759 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30703774 CGTAGTCGTAGTAGTAGT
1 CGTAGTC---GTAGTAGT
*
30703792 CGTAATCGTAATAGTAGT
1 CGTAGTCG---TAGTAGT
30703810 CGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
30703823 -GTAGTC--A-TAGT
1 CGTAGTCGTAGTAGT
30703834 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30703849 AGCAG-CAGTAGTAGT
1 CGTAGTC-GTAGTAGT
* * *
30703864 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30703879 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30703894 AGTAGTAGTACTAGT
1 CGTAGTCGTAGTAGT
30703909 CGTAGT--T-GTAGT
1 CGTAGTCGTAGTAGT
30703921 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
*
30703933 CGTAGTCGTAGTGGT
1 CGTAGTCGTAGTAGT
* *
30703948 TGTAATCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30703963 AGTAGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
*
30703978 CGTAGTAGTAGTAGTAAT
1 CGTAGTCGTAGTAG---T
30703996 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30704014 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30704029 AGTAGTCATAGTAGTAAT
1 CGTAGTC---GTAGTAGT
30704047 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30704062 AGTCGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30704077 CGTAGTC--A-TAGT
1 CGTAGTCGTAGTAGT
*
30704089 CGTAATCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
* *
30704107 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30704122 CGTAATAGTAGTTGT
1 CGTAGTCGTAGTAGT
** *
30704137 AATAGTGGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30704152 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704167 CGTA---ATAGTAGT
1 CGTAGTCGTAGTAGT
30704179 CGTAGTCGTAGTAG-
1 CGTAGTCGTAGTAGT
*
30704193 C--AGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
** * * *
30704206 AATCGTTGTCGTAGT
1 CGTAGTCGTAGTAGT
30704221 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
30704233 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30704248 AGTCGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* *
30704263 CGTAGTAGTAGCAG-
1 CGTAGTCGTAGTAGT
* *
30704277 CAGCAGTAGTAGTAGT
1 C-GTAGTCGTAGTAGT
* * *
30704293 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704308 CGTGGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30704323 AGTACTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30704338 CGTAGTCGTAGTTGTAAT
1 CGTAGTCGTA---GTAGT
* *
30704356 CGTAGTCATAGTGGT
1 CGTAGTCGTAGTAGT
* *
30704371 TGTAATCGTAGTA--
1 CGTAGTCGTAGTAGT
*
30704384 -GTAGTTGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704398 TGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30704413 AGTAGTCGTTGTTGTAGT
1 CGTAGTC---GTAGTAGT
30704431 AC-TAGTCGTAGTAGT
1 -CGTAGTCGTAGTAGT
*
30704446 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30704461 CGTAGTCGTAGTAAT
1 CGTAGTCGTAGTAGT
* *
30704476 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30704491 AC-TA-T--TAGTAGT
1 -CGTAGTCGTAGTAGT
*
30704503 TGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* ** *
30704518 AGTAGTAATCGTAGT
1 CGTAGTCGTAGTAGT
* *
30704533 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704548 CGTAGTTGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704563 CGTAGTTGTAGTCA-T
1 CGTAGTCGTAGT-AGT
* *
30704578 CGTAGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
*
30704593 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704608 --TA-TCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30704620 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30704635 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30704650 AGTACTAGTAGTCATAGT
1 CGTAGTCGTAG---TAGT
* * *
30704668 AGTAGTCATTGTAGT
1 CGTAGTCGTAGTAGT
*
30704683 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30704698 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704712 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30704724 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30704739 AGTAGTCGTAGTAAT
1 CGTAGTCGTAGTAGT
* ** *
30704754 AGTAGTAATCGTAGT
1 CGTAGTCGTAGTAGT
*
30704769 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30704784 CGTAGTAGTAGTAGTAGT
1 C---GTAGTCGTAGTAGT
* *
30704802 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30704817 CGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
30704832 CGTAGTCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30704846 CGTAGTAGTAGTAAT
1 CGTAGTCGTAGTAGT
30704861 CGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
*
30704874 -GTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30704888 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30704900 CGTTGTCGTAGTCA-T
1 CGTAGTCGTAGT-AGT
* *
30704915 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30704930 CGTAGTCGTAGTCATAGT
1 CGTAGTCGTAG---TAGT
*
30704948 CGTAATCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30704962 CGTA---GTAGTTGC
1 CGTAGTCGTAGTAGT
* * **
30704974 CGTACTAGTCCTAGT
1 CGTAGTCGTAGTAGT
30704989 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30705004 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705019 AGTAGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
30705034 CGTAGTCGTAACCGTAGT
1 CGTAGTCGT-A--GTAGT
30705052 CGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
30705065 -GTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
* *
30705077 -GTAGTTGTAGTAAT
1 CGTAGTCGTAGTAGT
*
30705091 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30705106 TGTTGTCGTAG-A--
1 CGTAGTCGTAGTAGT
30705118 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705133 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705148 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705163 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30705178 AGTCGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705193 CGTA---GTAGTTGT
1 CGTAGTCGTAGTAGT
* * * **
30705205 CATACTAGTCCTAGT
1 CGTAGTCGTAGTAGT
30705220 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705235 CGTAATAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705250 AGTAGTCGTAATAGT
1 CGTAGTCGTAGTAGT
* *
30705265 CATAGTAGTAGTCA-T
1 CGTAGTCGTAGT-AGT
30705280 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
*
30705292 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30705307 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705321 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
*
30705333 CTTAGT-G--GTAGT
1 CGTAGTCGTAGTAGT
*
30705345 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705360 AGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30705372 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705387 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* ** *
30705402 AGTTTTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30705417 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30705432 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705447 AGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30705462 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705477 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
30705492 CGTAGTCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30705506 CGTAGTAGTTG-ACGT
1 CGTAGTCGTAGTA-GT
*
30705521 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30705536 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30705548 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30705563 CGTAGTAC-TAGTAGT
1 CGTAGT-CGTAGTAGT
* * *
30705578 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30705593 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30705605 CGTAGT-G--GTAGT
1 CGTAGTCGTAGTAGT
* *
30705617 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705632 TGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30705650 CATAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
* *
30705668 CGTAGTAGTACTAGT
1 CGTAGTCGTAGTAGT
*
30705683 AC-TAGTTGTAGTAGT
1 -CGTAGTCGTAGTAGT
* *
30705698 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
**
30705713 AATAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705728 AGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30705743 AGTAGTCGTAGTACT
1 CGTAGTCGTAGTAGT
* *
30705758 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705773 AGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30705788 CGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30705803 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705818 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30705833 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30705845 CTTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30705860 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705875 AGTAGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
* * *
30705890 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30705905 CGTAGCCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30705923 CGTAGTCGTAGCCGTAGT
1 CGTAGTCGTA---GTAGT
*
30705941 CGTAGTCGTAGTAAT
1 CGTAGTCGTAGTAGT
*
30705956 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30705971 CGT--T-GTCGTAGT
1 CGTAGTCGTAGTAGT
30705983 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
* *
30705995 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706010 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706025 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706040 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706055 AGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706070 TGTCGTAC-TAGTCCTAGT
1 CGTAGT-CGTAG---TAGT
30706088 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30706103 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706115 CGTAGTAGTCA-TAGT
1 CGTAGTCGT-AGTAGT
* *
30706130 AGTAGTCGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30706145 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30706160 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706174 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
*
30706186 CTTA--C-TAGTAGT
1 CGTAGTCGTAGTAGT
*
30706198 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30706213 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* ** *
30706228 AGTTTTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30706243 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706258 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706273 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706288 CGTAATCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30706302 CGTAGTAGTTG-ACGT
1 CGTAGTCGTAGTA-GT
* * *
30706317 AGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706332 CGTAATCGT-GTAGT
1 CGTAGTCGTAGTAGT
* *
30706346 CGTA---GTAGTTGA
1 CGTAGTCGTAGTAGT
*
30706358 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706373 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706388 CGTA---GTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706400 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706415 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706430 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706445 CGTAGTAC-TTGTAGT
1 CGTAGT-CGTAGTAGT
* *
30706460 AGTAGTCGTAGTGGT
1 CGTAGTCGTAGTAGT
* * * *
30706475 AGTGGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
* *
30706490 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706505 TGTAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
*
30706523 CATAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
30706535 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706550 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706565 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706580 AGTAGTAGTAGTAATAGT
1 CGTAGTCGTAG---TAGT
*
30706598 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706613 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
30706626 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706640 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30706655 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30706670 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706685 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706700 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30706715 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706730 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30706745 CGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706760 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706775 --T-GTCGTACTAGT
1 CGTAGTCGTAGTAGT
* *
30706787 CCTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30706802 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706817 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
30706830 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30706844 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
30706859 CGTAGT--T-GTAGT
1 CGTAGTCGTAGTAGT
30706871 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30706886 CATTGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30706901 AGTAGTAGTCGTAAT
1 CGTAGTCGTAGTAGT
30706916 CGTAGTCG-A--AGT
1 CGTAGTCGTAGTAGT
*
30706928 CGTAATCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30706946 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30706961 AGTAGTCGT-G--GT
1 CGTAGTCGTAGTAGT
30706973 CGTAGTCGTAGGCGTAGT
1 CGTAGTCGTA---GTAGT
* *
30706991 CATAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30707006 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
* *
30707024 CATAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30707039 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30707054 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707069 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707084 GGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30707099 CGTAGTAGTAGTCACAGT
1 CGTAGTCGTAGT---AGT
* *
30707117 AG-ATGTCGTACTAGT
1 CGTA-GTCGTAGTAGT
* *
30707132 CCTAGTCGTAGTTGT
1 CGTAGTCGTAGTAGT
*
30707147 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707162 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30707177 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30707192 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707207 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
30707222 CGTAGTCGTTATCGTGTAGT
1 CGTAGTCG-TA----GTAGT
* *
30707242 CGTAGTAGTAGTAAT
1 CGTAGTCGTAGTAGT
30707257 CGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
* *
30707270 -GTAGTAGTAGTTGT
1 CGTAGTCGTAGTAGT
* *
30707284 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30707299 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * * * *
30707314 AGTCG-CAATCGTAAT
1 CGTAGTC-GTAGTAGT
*
30707329 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* *
30707344 AGTAGTAGTCA-TAGT
1 CGTAGTCGT-AGTAGT
30707359 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707374 AGCAG-C--AGTAGT
1 CGTAGTCGTAGTAGT
* *
30707386 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30707401 AGTAGTAGTACTAGT
1 CGTAGTCGTAGTAGT
30707416 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
*
30707428 CGTAGTCGTAGTGGT
1 CGTAGTCGTAGTAGT
* *
30707443 TGTAATCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707458 AGTAGT--T-GTTGT
1 CGTAGTCGTAGTAGT
* *
30707470 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30707485 AGTAATCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30707500 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707515 CGTAGTAGTAGTTGT
1 CGTAGTCGTAGTAGT
* * *
30707530 CATAGTCGTAATCGT
1 CGTAGTCGTAGTAGT
* *
30707545 -GTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30707559 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30707577 CATAGTCGTAATCGTAGT
1 CGTAGTCGT-A--GTAGT
*
30707595 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30707610 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
*
30707623 -GTAGTTGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707637 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30707652 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707667 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30707682 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
30707694 CGTAGTCGTAGTAG-
1 CGTAGTCGTAGTAGT
30707708 C--AGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
30707721 CGTA---GTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707733 CGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30707748 CGTAGTCGTAGTAG-
1 CGTAGTCGTAGTAGT
30707762 C--AGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707775 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
30707790 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30707802 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707817 AGCAG-CAGTAGTAGT
1 CGTAGTC-GTAGTAGT
* * * *
30707832 AGTAGTAGTCGTGGT
1 CGTAGTCGTAGTAGT
30707847 CGTAGTCGTAG--G-
1 CGTAGTCGTAGTAGT
30707859 CGTAGTC--A-TAGT
1 CGTAGTCGTAGTAGT
*
30707871 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30707886 AGTCGTTGTAGTAGT
1 CGTAGTCGTAGTAGT
30707901 CGTAGTC--A-TAGT
1 CGTAGTCGTAGTAGT
* **
30707913 AGTAG-C--AACAGT
1 CGTAGTCGTAGTAGT
*
30707925 AGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30707940 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30707955 CGTAGTAGTCA-TAGT
1 CGTAGTCGT-AGTAGT
30707970 CGTAGTCGTAGTAGTAGT
1 CGTAGTC---GTAGTAGT
* *
30707988 CGTAATCTTAGTAGT
1 CGTAGTCGTAGTAGT
* * * *
30708003 AGTCGTAGTTGTAGT
1 CGTAGTCGTAGTAGT
30708018 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30708036 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30708051 AGCAG-C--AGTTGT
1 CGTAGTCGTAGTAGT
* *
30708063 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30708078 CGTAGTCGTAGTAGTAGT
1 CGTAGTC---GTAGTAGT
* *
30708096 CGTAGTAGTAGTCGT
1 CGTAGTCGTAGTAGT
*
30708111 CGTAGTAGTCA-TAGT
1 CGTAGTCGT-AGTAGT
*
30708126 CGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
*
30708141 CGTAATCTTAGTAGTAGT
1 CGTAGTC---GTAGTAGT
*
30708159 CGTAGTCGTAGTTGT
1 CGTAGTCGTAGTAGT
* * *
30708174 AGTCA-TAGTCGTAGT
1 CGT-AGTCGTAGTAGT
*
30708189 CGTAGTCGTAATCTTAGT
1 CGTAGTCGT-A--GTAGT
30708207 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30708222 AGCAG-CAGTAGTAGT
1 CGTAGTC-GTAGTAGT
* *
30708237 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30708252 AGTTGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
30708267 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
*
30708279 CGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * * *
30708294 AGTAGTAGCAGCAGT
1 CGTAGTCGTAGTAGT
* *
30708309 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30708324 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30708339 AGTAGTAGTCGTAGT
1 CGTAGTCGTAGTAGT
*
30708354 CGTAATCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30708369 AGTTGTCGTATTCGTAGT
1 CGTAGTCGTA---GTAGT
30708387 CGTAGTCGTA--A-T
1 CGTAGTCGTAGTAGT
30708399 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30708414 AGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30708429 CGTAGTCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
*
30708447 CGTAGTCATAGTAGT
1 CGTAGTCGTAGTAGT
* *
30708462 AGTAGTCGTAGTCGT
1 CGTAGTCGTAGTAGT
* * *
30708477 AGTTGTAGTCA-TAGT
1 CGTAGTCGT-AGTAGT
*
30708492 CGTAATCGTAGTCGTAGT
1 CGTAGTCGTA---GTAGT
30708510 CGTAGTCGTAGT--T
1 CGTAGTCGTAGTAGT
30708523 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30708537 AGTAGTCGTAGTA--
1 CGTAGTCGTAGTAGT
30708550 -GTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30708564 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30708579 AGTGGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
* *
30708594 TGTAGTAGTAGTCGCAGT
1 CGTAGTCGTAGT---AGT
30708612 CGTAGTCGTAGTCGCAGT
1 CGTAGTCGTAGT---AGT
*
30708630 CGCAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
* * *
30708645 AGTCGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30708660 CGTAGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30708675 AGTAG-CAGTAGTAGT
1 CGTAGTC-GTAGTAGT
* * *
30708690 AGTGGTAGTAGTAGT
1 CGTAGTCGTAGTAGT
30708705 CGTAGTC---GTAGT
1 CGTAGTCGTAGTAGT
30708717 CGTAGTCGTAGTAGT
1 CGTAGTCGTAGTAGT
*
30708732 TGTAGT
1 CGTAGT
30708738 GGTATTAGTG
Statistics
Matches: 6549, Mismatches: 1190, Indels: 1090
0.74 0.13 0.12
Matches are distributed among these distances:
9 2 0.00
10 2 0.00
11 10 0.00
12 945 0.14
13 46 0.01
14 212 0.03
15 4256 0.65
16 37 0.01
17 22 0.00
18 995 0.15
19 4 0.00
20 12 0.00
21 6 0.00
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.34
Consensus pattern (15 bp):
CGTAGTCGTAGTAGT
Found at i:30709143 original size:28 final size:28
Alignment explanation
Indices: 30709112--30709171 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
30709102 AAAATGAGAC
*
30709112 TTTT-GGATACTTTAGGGCAAAATGGTAA
1 TTTTAGGAT-CTTGAGGGCAAAATGGTAA
* * *
30709140 TTTTAGGCTCTTGGGGGTAAAATGGTAA
1 TTTTAGGATCTTGAGGGCAAAATGGTAA
30709168 TTTT
1 TTTT
30709172 TAAAAATTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (28 bp):
TTTTAGGATCTTGAGGGCAAAATGGTAA
Found at i:30709306 original size:29 final size:29
Alignment explanation
Indices: 30709274--30709533 Score: 101
Period size: 30 Copynumber: 8.8 Consensus size: 29
30709264 ATTTGGGGGC
*
30709274 AAAATGGTAATTTTTAAAAGTTTAGGGTAA
1 AAAATGGTAATTTTTGAAAGTTTAGGGT-A
* * ****
30709304 AAAATGG-AGTTTTTGGACACCCAAGGGT-
1 AAAATGGTAATTTTT-GAAAGTTTAGGGTA
* *
30709332 AAAATGGTAATTTTTAAAAGCTTCAGGGTCA
1 AAAATGGTAATTTTTGAAAG-TTTAGGGT-A
* * **
30709363 AAAATGG-AGTTTTTGGACA-TTCGGGGGT-
1 AAAATGGTAATTTTT-GAAAGTT-TAGGGTA
* * *
30709391 GAAATGGTAA-TTTTGGAAGTTTTGGGGGTTA
1 AAAATGGTAATTTTTGAAAG-TTT-AGGG-TA
* *
30709422 AAAATAG-AATTTTTGGAAGTTTAGGGGTA
1 AAAATGGTAATTTTTGAAAGTTTA-GGGTA
* * *
30709451 AAACT-GTAATTTTTGGAAGTTTAGAAGTCA
1 AAAATGGTAATTTTTGAAAGTTTAG-GGT-A
*
30709481 AAAATGG-AATTTTT-AGAAGTTCAGGGGTA
1 AAAATGGTAATTTTTGA-AAGTTTA-GGGTA
*
30709510 AAAAT-GTAATTTTTTGATAGTTTA
1 AAAATGGTAA-TTTTTGAAAGTTTA
30709534 AGGACGTTTA
Statistics
Matches: 171, Mismatches: 35, Indels: 48
0.67 0.14 0.19
Matches are distributed among these distances:
27 2 0.01
28 22 0.13
29 58 0.34
30 63 0.37
31 26 0.15
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGAAAGTTTAGGGTA
Found at i:30709425 original size:59 final size:58
Alignment explanation
Indices: 30709245--30709523 Score: 226
Period size: 59 Copynumber: 4.8 Consensus size: 58
30709235 AATCGAGATC
* * ** *
30709245 AAAAACGGAATTTTTTGACATTTGGGGGCAAAATGGTAATTTTTAAAAGTTTAGGGTA
1 AAAAATGGAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTAAAAGTTTAGGGTA
* ** * * *
30709303 AAAAATGGAGTTTTTGGACACCCAAGGGTAAAATGGTAATTTTTAAAAGCTTCAGGGTC
1 AAAAATGGAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTAAAAG-TTTAGGGTA
* * * ** * *
30709362 AAAAATGGAGTTTTTGGACATTCGGGGGTGAAATGGTAA-TTTTGGAAGTTTTGGGGGTT
1 AAAAATGGAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTAAAAG-TTT-AGGGTA
* * ** * *
30709421 AAAAATAGAATTTTTGGA-AGTTTAGGGGTAAAACT-GTAATTTTTGGAAGTTTAGAAGTC
1 AAAAATGGAATTTTTGGACA-TTCAGGGGTAAAA-TGGTAATTTTTAAAAGTTTAG-GGTA
*
30709480 AAAAATGGAATTTTTAGA-AGTTCAGGGGTAAAAAT-GTAATTTTT
1 AAAAATGGAATTTTTGGACA-TTCAGGGGT-AAAATGGTAATTTTT
30709524 TGATAGTTTA
Statistics
Matches: 181, Mismatches: 33, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
58 51 0.28
59 116 0.64
60 14 0.08
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (58 bp):
AAAAATGGAATTTTTGGACATTCAGGGGTAAAATGGTAATTTTTAAAAGTTTAGGGTA
Found at i:30709449 original size:30 final size:29
Alignment explanation
Indices: 30709392--30709533 Score: 144
Period size: 29 Copynumber: 4.8 Consensus size: 29
30709382 TTCGGGGGTG
*
30709392 AAATGGTAA-TTTTGGAAGTTTTGGGGGTTAA
1 AAAT-GTAATTTTTGGAAG-TTTAGGGG-TAA
30709423 AAATAG-AATTTTTGGAAGTTTAGGGGTAA
1 AAAT-GTAATTTTTGGAAGTTTAGGGGTAA
* **
30709452 AACTGTAATTTTTGGAAGTTTAGAAGTCAA
1 AAATGTAATTTTTGGAAGTTTAGGGGT-AA
* * *
30709482 AAATGGAATTTTTAGAAGTTCAGGGGTAA
1 AAATGTAATTTTTGGAAGTTTAGGGGTAA
*
30709511 AAATGTAATTTTTTGATAGTTTA
1 AAATGTAATTTTTGGA-AGTTTA
30709534 AGGACGTTTA
Statistics
Matches: 93, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
28 1 0.01
29 41 0.44
30 37 0.40
31 14 0.15
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (29 bp):
AAATGTAATTTTTGGAAGTTTAGGGGTAA
Found at i:30711468 original size:24 final size:24
Alignment explanation
Indices: 30711413--30711466 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
30711403 CAAATTTACC
*
30711413 AAATTTAAATTAAAAAATTAATTT
1 AAATTTAAATTAAAAAATAAATTT
* *
30711437 AAATTTAAATTTATAAATAAATTT
1 AAATTTAAATTAAAAAATAAATTT
30711461 AGAATT
1 A-AATT
30711467 AACTTAAGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 22 0.85
25 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATTTAAATTAAAAAATAAATTT
Found at i:30712246 original size:201 final size:201
Alignment explanation
Indices: 30711901--30712310 Score: 721
Period size: 201 Copynumber: 2.0 Consensus size: 201
30711891 TCATCAGATT
*
30711901 AGGAAGCTAACCATTTTATTGCTTTGACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGA
1 AGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGA
* * *
30711966 AGATTTGCTCGCATCGAGCGTCTAGTTGGCATACTTCTCTGTATCTCATCAGGAAGATGACAGCC
66 AGATTTGCTCGCATCGAGCATCGAGTTGACATACTTCTCTGTATCTCATCAGGAAGATGACAGCC
* * *
30712031 TCACTTGTTTCAATTTGCTTCTCAGTATCTCATCCGGAAGACGAATTTGGTCCACTTCTCGGTAT
131 TCACTTGTTTCAATTCGCTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTAT
30712096 CTCATC
196 CTCATC
* *
30712102 AGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGA
1 AGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGA
* *
30712167 AGATTTGCTCGCATTGAGCATCGAGTTGACATACTTCTCTGTATCTCATCAGGAAGATGACCGCC
66 AGATTTGCTCGCATCGAGCATCGAGTTGACATACTTCTCTGTATCTCATCAGGAAGATGACAGCC
30712232 TCACTTGTTTCAATTCGCTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTAT
131 TCACTTGTTTCAATTCGCTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTAT
30712297 CTCATC
196 CTCATC
30712303 AGGAAGCT
1 AGGAAGCT
30712311 GGGGTTCGAA
Statistics
Matches: 198, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
201 198 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.32
Consensus pattern (201 bp):
AGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAGGGTTCGA
AGATTTGCTCGCATCGAGCATCGAGTTGACATACTTCTCTGTATCTCATCAGGAAGATGACAGCC
TCACTTGTTTCAATTCGCTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTAT
CTCATC
Found at i:30720220 original size:71 final size:72
Alignment explanation
Indices: 30720104--30720257 Score: 301
Period size: 71 Copynumber: 2.2 Consensus size: 72
30720094 ATGAATTCTT
30720104 GTTGGTTTTGATGTTAATGGGGAGTTGAAGTATTGATTGTTGATTTGAAAGTAGTTTATCATGTA
1 GTTGGTTTTGATGTTAATGGGGAGTTGAAGTATTGATTGTTGATTTGAAAGTAGTTTATCATGTA
30720169 A-TTTTG
66 ATTTTTG
30720175 GTTGGTTTTGATGTTAATGGGGAGTTGAAGTATTGATTGTTGATTTGAAAGTAGTTTATCATGTA
1 GTTGGTTTTGATGTTAATGGGGAGTTGAAGTATTGATTGTTGATTTGAAAGTAGTTTATCATGTA
30720240 ATTTTTG
66 ATTTTTG
30720247 GTTGGTTTTGA
1 GTTGGTTTTGA
30720258 GCCATGGATT
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
71 66 0.80
72 16 0.20
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (72 bp):
GTTGGTTTTGATGTTAATGGGGAGTTGAAGTATTGATTGTTGATTTGAAAGTAGTTTATCATGTA
ATTTTTG
Found at i:30721842 original size:158 final size:158
Alignment explanation
Indices: 30721620--30721925 Score: 393
Period size: 158 Copynumber: 1.9 Consensus size: 158
30721610 TGTTACAGTT
*
30721620 ACAGCTCGTATGAGCATTACAGGTTATATGGGTGCTAGTCTTAGATGTCCTACCGATGGCTGAGG
1 ACAGCTCGTATGAGCATTACAGGTTATATGGGTGCTAGTATTAGATGTCCTACCGATGGCTGAGG
* * * * * * *
30721685 TCTTG-TATTGGTTGCGGATTCTCCACAGCTCGTGTGAGCAGCATCGCATAG-CCTAGCATCTCG
66 T-TCGACATTGATTGCAGATCCTCCACAGCTCGTGTGAGCAACATCGCATAGCCCCA-CATCTCG
*
30721748 ATCCACAGCTCGTGTGAGCAAACCCATTTC
129 ACCCACAGCTCGTGTGAGCAAACCCATTTC
* * * *
30721778 ACAGCTCGTGTGAGCATTACATGTTATATGGGTGC-AGGTATTAGATGTCCTACTGATGGTTGAG
1 ACAGCTCGTATGAGCATTACAGGTTATATGGGTGCTA-GTATTAGATGTCCTACCGATGGCTGAG
* * * **
30721842 GTTCGACATTTATTGTAGCTCCTCCACAGCTCGTGTGAGCAACATCGTGTAGCCCCACATCTCGA
65 GTTCGACATTGATTGCAGATCCTCCACAGCTCGTGTGAGCAACATCGCATAGCCCCACATCTCGA
*
30721907 CCCATAGCTCGTGTGAGCA
130 CCCACAGCTCGTGTGAGCA
30721926 TATATGGTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
157 3 0.02
158 120 0.95
159 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (158 bp):
ACAGCTCGTATGAGCATTACAGGTTATATGGGTGCTAGTATTAGATGTCCTACCGATGGCTGAGG
TTCGACATTGATTGCAGATCCTCCACAGCTCGTGTGAGCAACATCGCATAGCCCCACATCTCGAC
CCACAGCTCGTGTGAGCAAACCCATTTC
Found at i:30728235 original size:3 final size:3
Alignment explanation
Indices: 30728227--30728264 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
30728217 GTTTCTTGTC
*
30728227 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
30728265 CCAAATCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:30739690 original size:50 final size:50
Alignment explanation
Indices: 30739557--30739721 Score: 149
Period size: 50 Copynumber: 3.3 Consensus size: 50
30739547 CTGCAACTTC
* * * * *
30739557 AGGGGTATAAGATTCGCCTTTGCGGCTTCAATCTATCCCT-TTACAGTTTT
1 AGGGGTGTAAGATTCGCCTTTACGACTTCAATCTATTCCTCTT-CAGGTTT
* * * *
30739607 AGGGGTGTACGATTCGCCTTTACGACTTCAATCTGTGT-TTCTTCGGGTTT
1 AGGGGTGTAAGATTCGCCTTTACGACTTCAATCTAT-TCCTCTTCAGGTTT
* * *
30739657 AGGGGTGTAAGATTCGCTGTTGTA-G-CTTTAATCTATTCCTCTTCAGTTTT
1 AGGGGTGTAAGATTCGC-CTT-TACGACTTCAATCTATTCCTCTTCAGGTTT
*
30739707 AAGGGTGTAAGATTC
1 AGGGGTGTAAGATTC
30739722 ATCGTTGCGA
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
49 1 0.01
50 85 0.91
51 5 0.05
52 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (50 bp):
AGGGGTGTAAGATTCGCCTTTACGACTTCAATCTATTCCTCTTCAGGTTT
Found at i:30739771 original size:49 final size:49
Alignment explanation
Indices: 30739682--30740347 Score: 531
Period size: 49 Copynumber: 13.6 Consensus size: 49
30739672 GCTGTTGTAG
* * * *
30739682 CTTTAATCTATTCCTCTTC-AGTTTTAAGGGTGTAAGATTCATCGTTGCGA
1 CTTTAATCTGTCCCTCTTCGA-TTTT-AGGGTGTAAGATTCATCATTACGA
* * * **
30739732 CTTTAATCTGTCCCTATTCGATTTTAGGGTGTAAAATTCATTATTGTGA
1 CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
* * * *
30739781 CTTTAATTTGTCCCTTTTCAATTTTAGGGTGTAAGATTCATCGTTACGA
1 CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
* ** * *
30739830 CTTTAATTTGTCCCTCTTC-AGTTTTATAGTGTAAGAATT-ACCGTT--GTA
1 CTTTAATCTGTCCCTCTTCGA-TTTTAGGGTGTAAG-ATTCATCATTACG-A
* * *
30739878 GCTTTAATCTATCCGTCTTCGATTTT-GAGGTGTAAGATT--TGCTATTACGG
1 -CTTTAATCTGTCCCTCTTCGATTTTAG-GGTGTAAGATTCAT-C-ATTACGA
* ** *
30739928 CTTTAATTTGTCCCTCTTTAATTTT-GAGGTGTAAGATTCATTATTACGA
1 CTTTAATCTGTCCCTCTTCGATTTTAG-GGTGTAAGATTCATCATTACGA
* * * * * *
30739977 GTTTAATCTATCCCTCTTCGATTTTACGATGTAAGATTCTTCGTTACGA
1 CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
* * *
30740026 CTTTAATCTATCCCTCTTC-ATTTTTGAGGTGTAAGATTCACCATTAC-A
1 CTTTAATCTGTCCCTCTTCGATTTTAG-GGTGTAAGATTCATCATTACGA
* * * * * *
30740074 GCTTTAATCTGCCCCTCTT-TAGTTTTGGGGTATAAGATTCACCGTT--GTA
1 -CTTTAATCTGTCCCTCTTCGA-TTTTAGGGTGTAAGATTCATCATTACG-A
* * *
30740123 GCTTTAATATGTCCCTCTTCTATTTT-GAGGTGTAAGATTCACCATTAC-A
1 -CTTTAATCTGTCCCTCTTCGATTTTAG-GGTGTAAGATTCATCATTACGA
* * *
30740172 GCTTTAATTTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATTATTACGA
1 -CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
* * * * *
30740222 CTTTAATTTGTCCCT-TTCTAGTTTTAGGGTGTAAGATTCGTTATTACGG
1 CTTTAATCTGTCCCTCTTCGA-TTTTAGGGTGTAAGATTCATCATTACGA
* * *
30740271 CTTTAATCTGTCCCTCTTCGAATTTAAGGTGTAAGATTCACCATTAC-A
1 CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
* *
30740319 GCTTTAATCTGTCCCTCTTCAACTTTAGG
1 -CTTTAATCTGTCCCTCTTCGATTTTAGG
30740348 ATTTGGTGGC
Statistics
Matches: 507, Mismatches: 80, Indels: 59
0.78 0.12 0.09
Matches are distributed among these distances:
47 1 0.00
48 17 0.03
49 450 0.89
50 36 0.07
51 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (49 bp):
CTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTACGA
Found at i:30739910 original size:147 final size:147
Alignment explanation
Indices: 30739682--30740338 Score: 585
Period size: 147 Copynumber: 4.5 Consensus size: 147
30739672 GCTGTTGTAG
* * * * *
30739682 CTTTAATCTATTCCTCTTCAGTTTTAAGGGTGTAAGATTCATCGTTG-CGACTTTAATCTGTCCC
1 CTTTAATCTGTCCCTCTTCAGTTTTAA--GTGTAAGATTCACCGTTGTAGACTTTAATCTATCCC
* * * **
30739746 TATTCGATTTT-AGGGTGTAAAATTCATTATTGTGACTTTAATTTGTCCCT-TTTCAATTTTAGG
64 TCTTCGATTTTGA-GGTGTAAGATTCACTATTACGACTTTAATTTGTCCCTCTTT-AATTTTAGG
*
30739809 GTGTAAGATTCATCGTTACGA
127 GTGTAAGATTCATCATTACGA
* *
30739830 CTTTAATTTGTCCCTCTTCAGTTTTATAGTGTAAGAATT-ACCGTTGTAG-CTTTAATCTATCCG
1 CTTTAATCTGTCCCTCTTCAGTTTTA-AGTGTAAG-ATTCACCGTTGTAGACTTTAATCTATCCC
** *
30739893 TCTTCGATTTTGAGGTGTAAGATTTGCTATTACGGCTTTAATTTGTCCCTCTTTAATTTT-GAGG
64 TCTTCGATTTTGAGGTGTAAGATTCACTATTACGACTTTAATTTGTCCCTCTTTAATTTTAG-GG
*
30739957 TGTAAGATTCATTATTACGA
128 TGTAAGATTCATCATTACGA
* * * **
30739977 GTTTAATCTATCCCTCTTC-GATTTTACGATGTAAGATTCTTCG-T-TACGACTTTAATCTATCC
1 CTTTAATCTGTCCCTCTTCAG-TTTTAAG-TGTAAGATTCACCGTTGTA-GACTTTAATCTATCC
* * * * *
30740039 CTCTTC-ATTTTTGAGGTGTAAGATTCACCATTAC-AGCTTTAATCTGCCCCTCTTTAGTTTTGG
63 CTCTTCGA-TTTTGAGGTGTAAGATTCACTATTACGA-CTTTAATTTGTCCCTCTTTAATTTTAG
* * *
30740102 GGTATAAGATTCACCGTT--GTA
126 GGTGTAAGATTCATCATTACG-A
* * * ** * *
30740123 GCTTTAATATGTCCCTCTTCTA-TTTTGAGGTGTAAGATTCACCATTACAG-CTTTAATTTGTCC
1 -CTTTAATCTGTCCCTCTTC-AGTTTT-AAGTGTAAGATTCACCGTTGTAGACTTTAATCTATCC
* * *
30740186 CTCTTCGATTTTAAGGTGTAAGATTCATTATTACGACTTTAATTTGTCCCT-TTCTAGTTTTAGG
63 CTCTTCGATTTTGAGGTGTAAGATTCACTATTACGACTTTAATTTGTCCCTCTT-TAATTTTAGG
* * *
30740250 GTGTAAGATTCGTTATTACGG
127 GTGTAAGATTCATCATTACGA
* * ** *
30740271 CTTTAATCTGTCCCTCTTC-GAATTTAAGGTGTAAGATTCACCATTACAG-CTTTAATCTGTCCC
1 CTTTAATCTGTCCCTCTTCAG-TTTTAA-GTGTAAGATTCACCGTTGTAGACTTTAATCTATCCC
30740334 TCTTC
64 TCTTC
30740339 AACTTTAGGA
Statistics
Matches: 419, Mismatches: 61, Indels: 59
0.78 0.11 0.11
Matches are distributed among these distances:
145 3 0.01
146 13 0.03
147 362 0.86
148 38 0.09
149 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.43
Consensus pattern (147 bp):
CTTTAATCTGTCCCTCTTCAGTTTTAAGTGTAAGATTCACCGTTGTAGACTTTAATCTATCCCTC
TTCGATTTTGAGGTGTAAGATTCACTATTACGACTTTAATTTGTCCCTCTTTAATTTTAGGGTGT
AAGATTCATCATTACGA
Found at i:30740346 original size:98 final size:98
Alignment explanation
Indices: 30739680--30740347 Score: 590
Period size: 98 Copynumber: 6.8 Consensus size: 98
30739670 TCGCTGTTGT
* * *
30739680 AGCTTTAATCTATTCCTCTTC-AGTTTTAAGGGTGTAAGATTCATCGTTGCGACTTTAATCTGTC
1 AGCTTTAATCTGTCCCTCTTCGA-TTTTAA-GGTGTAAGATTCATCGTTACGACTTTAATCTGTC
* * * *
30739744 CCTATTCGATTTTAGGGTGTAAAATTCATTATT-G
64 CCTCTTCAATTTTAGGGTGTAAGATTCATTATTAC
* * * * * *
30739778 TGACTTTAATTTGTCCCTTTTCAATTTTAGGGTGTAAGATTCATCGTTACGACTTTAATTTGTCC
1 AG-CTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACGACTTTAATCTGTCC
* ** *** **
30739843 CTCTTCAGTTTTATAGTGTAAGAATT-ACCGTTGT
65 CTCTTCAATTTTAGGGTGTAAG-ATTCATTATTAC
* * * * * *
30739877 AGCTTTAATCTATCCGTCTTCGATTTTGAGGTGTAAGATT--TGCTATTACGGCTTTAATTTGTC
1 AGCTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCAT-C-GTTACGACTTTAATCTGTC
*
30739940 CCTCTTTAATTTT-GAGGTGTAAGATTCATTATTAC
64 CCTCTTCAATTTTAG-GGTGTAAGATTCATTATTAC
* * * * *
30739975 GAG-TTTAATCTATCCCTCTTCGATTTTACGATGTAAGATTCTTCGTTACGACTTTAATCTATCC
1 -AGCTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACGACTTTAATCTGTCC
* **
30740039 CTCTTC-ATTTTTGAGGTGTAAGATTCACCATTAC
65 CTCTTCAATTTTAG-GGTGTAAGATTCATTATTAC
* * ** * * *
30740073 AGCTTTAATCTGCCCCTCTT-TAGTTTTGGGGTATAAGATTCACCGTT--GTAGCTTTAATATGT
1 AGCTTTAATCTGTCCCTCTTCGA-TTTTAAGGTGTAAGATTCATCGTTACG-A-CTTTAATCTGT
* **
30740135 CCCTCTTCTATTTT-GAGGTGTAAGATTCACCATTAC
63 CCCTCTTCAATTTTAG-GGTGTAAGATTCATTATTAC
* ** *
30740171 AGCTTTAATTTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATTATTACGACTTTAATTTGTCCC
1 AGCTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACGACTTTAATCTGTCCC
* *
30740236 T-TTCTAGTTTTAGGGTGTAAGATTCGTTATTAC
66 TCTTC-AATTTTAGGGTGTAAGATTCATTATTAC
* * * *
30740269 GGCTTTAATCTGTCCCTCTTCGAATTTAAGGTGTAAGATTCACCATTAC-AGCTTTAATCTGTCC
1 AGCTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACGA-CTTTAATCTGTCC
*
30740333 CTCTTCAACTTTAGG
65 CTCTTCAATTTTAGG
30740348 ATTTGGTGGC
Statistics
Matches: 464, Mismatches: 82, Indels: 48
0.78 0.14 0.08
Matches are distributed among these distances:
96 2 0.00
97 17 0.04
98 404 0.87
99 38 0.08
100 3 0.01
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (98 bp):
AGCTTTAATCTGTCCCTCTTCGATTTTAAGGTGTAAGATTCATCGTTACGACTTTAATCTGTCCC
TCTTCAATTTTAGGGTGTAAGATTCATTATTAC
Found at i:30756812 original size:15 final size:15
Alignment explanation
Indices: 30756794--30756827 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
30756784 AAAGGAACTA
30756794 AAGAGAAGAAGGATG
1 AAGAGAAGAAGGATG
*
30756809 AAGAGGAGAAGGATG
1 AAGAGAAGAAGGATG
30756824 AAGA
1 AAGA
30756828 TACCCCGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.41, T:0.06
Consensus pattern (15 bp):
AAGAGAAGAAGGATG
Found at i:30763393 original size:17 final size:17
Alignment explanation
Indices: 30763367--30763404 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
30763357 TGTAAATAAT
30763367 ATAAAAAATAG-TAACAA
1 ATAAAAAATAGATAA-AA
*
30763384 ATAAATAATAGATAAAA
1 ATAAAAAATAGATAAAA
30763401 ATAA
1 ATAA
30763405 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (17 bp):
ATAAAAAATAGATAAAA
Found at i:30763411 original size:26 final size:26
Alignment explanation
Indices: 30763359--30763413 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
30763349 GGCATAAATG
* *
30763359 TAAATAATATAAAAAATAGTAACAAA
1 TAAATAATAGAAAAAATAATAACAAA
*
30763385 TAAATAATAGATAAAAATAATTA-AAA
1 TAAATAATAGA-AAAAATAATAACAAA
30763411 TAA
1 TAA
30763414 TACAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (26 bp):
TAAATAATAGAAAAAATAATAACAAA
Found at i:30768037 original size:20 final size:20
Alignment explanation
Indices: 30767989--30768044 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
30767979 TAATTTAATA
** *
30767989 ATTATCTTAATATT-ATTTT
1 ATTATCTTAATATTAAAGTG
*
30768008 ATTATTTTAATATTAAAGTG
1 ATTATCTTAATATTAAAGTG
30768028 ATTATCTTAATATTAAA
1 ATTATCTTAATATTAAA
30768045 CTAAATTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 13 0.42
20 18 0.58
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (20 bp):
ATTATCTTAATATTAAAGTG
Found at i:30769860 original size:19 final size:18
Alignment explanation
Indices: 30769838--30769881 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
30769828 GGAAGTGAAA
*
30769838 AAAAAATTTAACATTAAAT
1 AAAAAATTCAA-ATTAAAT
*
30769857 AAAATTATTCAAATTAAAT
1 AAAA-AATTCAAATTAAAT
30769876 AAAAAA
1 AAAAAA
30769882 CATTTCAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 15 0.71
20 5 0.24
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAAATTCAAATTAAAT
Found at i:30769860 original size:20 final size:19
Alignment explanation
Indices: 30769837--30769886 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
30769827 TGGAAGTGAA
30769837 AAAAAAATTTAACATTAAAT
1 AAAAAAATTTAA-ATTAAAT
** *
30769857 AAAATTATTCAAATTAAAT
1 AAAAAAATTTAAATTAAAT
30769876 AAAAAACATTT
1 AAAAAA-ATTT
30769887 CAAGGATATC
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAAAATTTAAATTAAAT
Found at i:30774486 original size:6 final size:6
Alignment explanation
Indices: 30774475--30774513 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
30774465 TGATCAAAAT
* * *
30774475 TGAAAG TGAAAG TGAAAG TGAAAT TGGAAT TGAAAG TGA
1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGA
30774514 TATGAATTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (6 bp):
TGAAAG
Found at i:30779471 original size:3 final size:3
Alignment explanation
Indices: 30779463--30779499 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
30779453 TTCTTGTCAT
*
30779463 TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
30779500 TAAAATCACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:30781216 original size:18 final size:18
Alignment explanation
Indices: 30781188--30781230 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
30781178 AAATAGATAT
30781188 TTATGTTCTAAATATG-TGA
1 TTAT-TTCT-AATATGATGA
*
30781207 TTATTTCTAATATGATTA
1 TTATTTCTAATATGATGA
30781225 TTATTT
1 TTATTT
30781231 TTGTATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 12 0.55
19 4 0.18
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (18 bp):
TTATTTCTAATATGATGA
Found at i:30789270 original size:15 final size:14
Alignment explanation
Indices: 30789250--30789284 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
30789240 AATAATAGAT
*
30789250 AAAATACTAATTAA
1 AAAATACAAATTAA
30789264 AATAATACAAATTAA
1 AA-AATACAAATTAA
30789279 AAAATA
1 AAAATA
30789285 TATATAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATACAAATTAA
Found at i:30792784 original size:49 final size:49
Alignment explanation
Indices: 30792684--30793138 Score: 268
Period size: 49 Copynumber: 9.3 Consensus size: 49
30792674 TAACGACATC
* ** * * * *
30792684 AATCTGTCTCTCTTTGGGTTTAGAGGTGTAAGA-TCTACCGTTACAGTTTT
1 AATCTGTCCCTCTTCAGTTTTAGA-GTGTAAGATTC-ATCATTACAGCTTT
* *
30792734 AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATTATTGCAGCTTT
1 AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATCATTACAGCTTT
* * * *
30792783 AATCTCTCCCTCTTCAGTTTTATGA-TGTAAGATTCTTCGTTA-TGACTTT
1 AATCTGTCCCTCTTCAGTTTTA-GAGTGTAAGATTCATCATTACAG-CTTT
* * * * * * *
30792832 TATCTATCCCTTTTCAGTTTTGGGGTGTAAGATTCACCGTTACAGCTTT
1 AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATCATTACAGCTTT
* * ** * * * **
30792881 AATTTGTCCCTATTTGGTTTT-GGGTATAAGATTCATCGTTGTAGCTTT
1 AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATCATTACAGCTTT
* * * *
30792929 AATATGTCCCTTTTTTA-TTTT-GAGGTGTAAGATTCACCATTACAGCTTT
1 AATCTGTCCC-TCTTCAGTTTTAGA-GTGTAAGATTCATCATTACAGCTTT
* * * * * *
30792978 AATTTGTCCCTCTT-TGTTTTTA-AGGTGTAAAATTTATTATTACGGCTTT
1 AATCTGTCCCTCTTCAG-TTTTAGA-GTGTAAGATTCATCATTACAGCTTT
* * * * * * * *
30793027 AATTTGCCCCTTTTCAATTTTAGGGTGTAAAATTTATTA-TAGC-GACTTT
1 AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATCATTA-CAG-CTTT
* * *
30793076 AATCTGCCCCTCTTC-GATTTTAGGGTGTAAGATTCACCATTAC-GACTTT
1 AATCTGTCCCTCTTCAG-TTTTAGAGTGTAAGATTCATCATTACAG-CTTT
30793125 AATCTGTCCCTCTT
1 AATCTGTCCCTCTT
30793139 TAACTTTAAG
Statistics
Matches: 326, Mismatches: 63, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
48 45 0.14
49 254 0.78
50 27 0.08
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (49 bp):
AATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATCATTACAGCTTT
Found at i:30792878 original size:98 final size:97
Alignment explanation
Indices: 30792722--30792991 Score: 276
Period size: 97 Copynumber: 2.8 Consensus size: 97
30792712 TAAGATCTAC
* * * * ** *
30792722 CGTTACAG-TTTTAATCTGTCCCTCTTCAGTTTTAGAGTGTAAGATTCATTATTGCAGCTTTAAT
1 CGTTATAGCTTTT-ATCTGTCCCTTTTCAGTTTTGGGGTGTAAGATTCACCATTACAGCTTTAAT
* * * * *
30792786 CTCTCCCTCTTCAGTTTTATGATGTAAGATTCTT
65 TTGTCCCTCTTCAGTTTT-GGATATAAGATTCAT
* *
30792820 CGTTAT-GACTTTTATCTATCCCTTTTCAGTTTTGGGGTGTAAGATTCACCGTTACAGCTTTAAT
1 CGTTATAG-CTTTTATCTGTCCCTTTTCAGTTTTGGGGTGTAAGATTCACCATTACAGCTTTAAT
* ** *
30792884 TTGTCCCTATTTGGTTTTGGGTATAAGATTCAT
65 TTGTCCCTCTTCAGTTTTGGATATAAGATTCAT
* * * * *
30792917 CGTTGTAGCTTTAATATGTCCCTTTTTTA-TTTTGAGGTGTAAGATTCACCATTACAGCTTTAAT
1 CGTTATAGCTTTTATCTGTCCC-TTTTCAGTTTTGGGGTGTAAGATTCACCATTACAGCTTTAAT
30792981 TTGTCCCTCTT
65 TTGTCCCTCTT
30792992 TGTTTTTAAG
Statistics
Matches: 142, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
97 71 0.50
98 67 0.47
99 4 0.03
ACGTcount: A:0.20, C:0.18, G:0.16, T:0.46
Consensus pattern (97 bp):
CGTTATAGCTTTTATCTGTCCCTTTTCAGTTTTGGGGTGTAAGATTCACCATTACAGCTTTAATT
TGTCCCTCTTCAGTTTTGGATATAAGATTCAT
Found at i:30801003 original size:11 final size:12
Alignment explanation
Indices: 30800976--30801004 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
30800966 TCTTGATGAG
30800976 CCTAGATAAGCA
1 CCTAGATAAGCA
30800988 CCTAGATAAG-A
1 CCTAGATAAGCA
30800999 CCTAGA
1 CCTAGA
30801005 GGATATGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.41, C:0.24, G:0.17, T:0.17
Consensus pattern (12 bp):
CCTAGATAAGCA
Found at i:30802499 original size:27 final size:27
Alignment explanation
Indices: 30802469--30802576 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 27
30802459 TGAAAATAAC
* * *
30802469 AATGATCTACCTCCACTGCTGCTACAA
1 AATGTTCTTCCTCCACTGCTGCCACAA
* * *
30802496 AATGTTTTTCCTCCAGTGCAGCCACAA
1 AATGTTCTTCCTCCACTGCTGCCACAA
* *
30802523 AATGTTGTTCCTCTACTGCTGCCACAA
1 AATGTTCTTCCTCCACTGCTGCCACAA
* * * *
30802550 AATGTTGTTCCTCTAGTGCAGCCACAA
1 AATGTTCTTCCTCCACTGCTGCCACAA
30802577 GGAGTTAACA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (27 bp):
AATGTTCTTCCTCCACTGCTGCCACAA
Found at i:30808464 original size:2 final size:2
Alignment explanation
Indices: 30808457--30808483 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
30808447 TTTGAAACTT
30808457 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
30808484 TGGAAGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:30814028 original size:23 final size:23
Alignment explanation
Indices: 30813996--30814117 Score: 113
Period size: 23 Copynumber: 5.3 Consensus size: 23
30813986 GAACACTAGC
* *
30813996 GTGCTTTCTGATTAACACTGTGT
1 GTGCTCTCTGATTAGCACTGTGT
*
30814019 GTGCTCTCTGATTAGCATTGTGT
1 GTGCTCTCTGATTAGCACTGTGT
* *
30814042 GTGCTCTCTGTTTAGCAC-GTCT
1 GTGCTCTCTGATTAGCACTGTGT
* * *
30814064 CTGCTATCTGTTATTAACACT-TCGT
1 GTGCTCTCTG--ATTAGCACTGT-GT
* *
30814089 GTGCTCTTTGATTAGCACTTTGT
1 GTGCTCTCTGATTAGCACTGTGT
30814112 GTGCTC
1 GTGCTC
30814118 AGAACTTTAT
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
22 11 0.14
23 52 0.66
24 8 0.10
25 8 0.10
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (23 bp):
GTGCTCTCTGATTAGCACTGTGT
Found at i:30816162 original size:49 final size:49
Alignment explanation
Indices: 30815934--30816909 Score: 472
Period size: 49 Copynumber: 19.8 Consensus size: 49
30815924 GTAACTTCAG
* * * *
30815934 GGGTATAAGATTCACCT-TTACGGCTTCAATCTATCCCTCTAC-AGTTTTAA
1 GGGTGTAAGATTCA-CTGTTATGGCTTTAATCTATCCCTCTTCGA-TTTT-A
* * * * * **
30815984 GGGTGTATGATTCGCCT-TTGTGGCTTCAATCTATCTCTCTTCGGGTTTA
1 GGGTGTAAGATTC-ACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
** *** * *
30816033 GGGGTGTAAGATT-TGTCGTTGCAGCTTTAATCTATTCCGCTTC-AGTTTTA
1 -GGGTGTAAGATTCACT-GTTATGGCTTTAATCTATCCCTCTTCGA-TTTTA
* * * *
30816083 GGGGTGCAAGATTCATTGTTGTGACTTTAATCTATCCCTCTTCGATTTTA
1 -GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * * * *
30816133 AGGTGTAAGATTCACTATTATGGCTTTAATATGTCCCTCTTTGATTTTA
1 GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* *** *
30816182 GGATGTAAGATTCA-TCGTTGCAGCTTTAATCTATCCCTCTTC-ATTTTT
1 GGGTGTAAGATTCACT-GTTATGGCTTTAATCTATCCCTCTTCGATTTTA
** * * * *
30816230 GTGGTGTAAGATTCACCATTGTTGCTTTAATCTGTCCCTCTTC-ATTTTT
1 G-GGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * *
30816279 GTGGTGTAAGATTCA-TCATTACGGCTTTAATCTATCCCTCTTCGATTTTG
1 G-GGTGTAAGATTCACT-GTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * * * *
30816329 GGGTGTAAGATT-TCTCGTTACGACTTTAATCTATCCCTTTTTCAGTTTTTA
1 GGGTGTAAGATTCACT-GTTATGGCTTTAATCTATCCC-TCTTC-GATTTTA
* ** * * * * *
30816380 -GGTGTAAGA-TCATTGTTGCGACTTTAATCTGTCACACTTTGATTTT-
1 GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * * * * * *
30816426 GGGATGTAAGATTC-TTCGTTATGACTTTAATTTGTTCCTCTTCGATCTTG
1 GGG-TGTAAGATTCACT-GTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * * ** *
30816476 GGGTGTAAGATTTC-CTGTTACGACTTTAATCTAT-CCTTTTTTAGTTTTT
1 GGGTGTAAGA-TTCACTGTTATGGCTTTAATCTATCCCTCTTCGA-TTTTA
* ** * * * *
30816525 GGGTGTAAGATTCATTGTTGCGACTTTAATTTGTCACTCTTCGATTTT-
1 GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
** ** * * * * ** *
30816573 GCAATGTAAGATTCTTTGTTACGACTTTAATCTGTCCCTTTTTAATATTTG
1 G-GGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGAT-TTTA
* * * * * *
30816624 GGGTGTAAGATTTACCGTT-TCAGCTTTAATTTATCCTTCTT-TAGTTTTA
1 GGGTGTAAGATTCACTGTTAT-GGCTTTAATCTATCCCTCTTCGA-TTTTA
* * * * * * * * * *
30816673 GGGTATAAGATTCACCGTTGTAGCTTTAATATGTCTCTATTTTG-TTTTG
1 GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCT-CTTCGATTTTA
***
30816722 GGGTGTAAGATTCA-TCGTTGCAGCTTTAATCTATCCCTCTTCGATTTTA
1 GGGTGTAAGATTCACT-GTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* * * ** * *
30816771 GGGTGCAAGACT-AGTTGTTGCGGCTTTAATCTGTCCCTCTTCAATTTTA
1 GGGTGTAAGATTCA-CTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
* *
30816820 AGGTGTAAGATTCATCAT-TTCA--GATTTAATCTATCCCTCTTCGATTTTA
1 GGGTGTAAGATTCA-C-TGTT-ATGGCTTTAATCTATCCCTCTTCGATTTTA
* * *
30816869 GGGTGTAAGATTCACTGTTACGGCTTTAATTTGTCCCTCTT
1 GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTT
30816910 TAACTTTAGG
Statistics
Matches: 723, Mismatches: 159, Indels: 89
0.74 0.16 0.09
Matches are distributed among these distances:
47 9 0.01
48 36 0.05
49 491 0.68
50 178 0.25
51 9 0.01
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (49 bp):
GGGTGTAAGATTCACTGTTATGGCTTTAATCTATCCCTCTTCGATTTTA
Found at i:30816288 original size:147 final size:145
Alignment explanation
Indices: 30816005--30816909 Score: 678
Period size: 147 Copynumber: 6.1 Consensus size: 145
30815995 TCGCCTTTGT
* * * ** ** *
30816005 GGCTTCAATCTATCTCTCTTCGGGTTTAGGGGTGTAAGATTTGTCGTTGCAGCTTTAATCTATTC
1 GGCTTTAATCTGTCCCTCTTCGATTTTA-GGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCC
* * * *
30816070 CGCTTCAGTTTTAGGGGTGCAAGATT--CATTGTTGTGACTTTAATCTATCCCTCTTCGATTTTA
65 CTCTTCAGTTTT-TGGGTGTAAGATTCACATTG-T-TGACTTTAATCTGTCCCTCTTCGATTTT-
* * *
30816133 AGGTGTAAGATTCACTATTAT
126 GGGTGTAAGATTCA-TGTTAC
* * *
30816154 GGCTTTAATATGTCCCTCTTTGATTTTAGGATGTAAGATTCATCGTTGCAGCTTTAATCTATCCC
1 GGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCCC
30816219 TCTTCA-TTTTTGTGGTGTAAGATTCACCATTGTTG-CTTTAATCTGTCCCTCTTC-ATTTTTGT
66 TCTTCAGTTTTTG-GGTGTAAGATTCA-CATTGTTGACTTTAATCTGTCCCTCTTCGA-TTTTG-
*
30816281 GGTGTAAGATTCATCATTAC
127 GGTGTAAGATTCAT-GTTAC
* * *
30816301 GGCTTTAATCTATCCCTCTTCGATTTTGGGGTGTAAGATTTC-TCGTTAC-GACTTTAATCTATC
1 GGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGA-TTCATCGTTGCAG-CTTTAATCTATC
* * * * *
30816364 CCTTTTTCAGTTTTTAGGTGTAAGA-T--CATTGTTGCGACTTTAATCTGTCACACTTTGATTTT
64 CC-TCTTCAGTTTTTGGGTGTAAGATTCACATTGTT--GACTTTAATCTGTCCCTCTTCGATTTT
* *
30816426 GGGATGTAAGATTCTTCGTTAT
126 GGG-TGTAAGATTCAT-GTTAC
* * * * * * *
30816448 GACTTTAATTTGTTCCTCTTCGATCTTGGGGTGTAAGATTTCCT-GTTAC-GACTTTAATCTATC
1 GGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGA-TTCATCGTTGCAG-CTTTAATCTATC
* * * * *
30816511 CTTTTTTAGTTTTTGGGTGTAAGATT--CATTGTTGCGACTTTAATTTGTCACTCTTCGATTTTG
64 CCTCTTCAGTTTTTGGGTGTAAGATTCACATTGTT--GACTTTAATCTGTCCCTCTTCGATTTTG
** *
30816574 CAATGTAAGATTCTTTGTTAC
127 -GGTGTAAGATTC-ATGTTAC
* * ** * * * * *
30816595 GACTTTAATCTGTCCCTTTTTAATATTTGGGGTGTAAGATTTACCGTTTCAGCTTTAATTTATCC
1 GGCTTTAATCTGTCCCTCTTCGAT-TTTAGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCC
* * * * * * * * * *
30816660 TTCTTTAGTTTTAGGGTATAAGATTCACCGTTGTAG-CTTTAATATGTCTCTATTTTG-TTTTGG
65 CTCTTCAGTTTTTGGGTGTAAGATTCA-CATTGTTGACTTTAATCTGTCCCT-CTTCGATTTT-G
*
30816723 GGTGTAAGATTCATCGTTGC
127 GGTGTAAGATTCAT-GTTAC
* * * * * * *
30816743 AGCTTTAATCTATCCCTCTTCGATTTTAGGGTGCAAGACT-AGTTGTTGCGGCTTTAATCTGTCC
1 GGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCA-TCGTTGCAGCTTTAATCTATCC
* ** * *
30816807 CTCTTCAATTTTAAGGTGTAAGATTCATCATT-TCAGA-TTTAATCTATCCCTCTTCGATTTTAG
65 CTCTTCAGTTTTTGGGTGTAAGATTCA-CATTGT-TGACTTTAATCTGTCCCTCTTCGATTTT-G
30816870 GGTGTAAGATTCACTGTTAC
127 GGTGTAAGATTCA-TGTTAC
*
30816890 GGCTTTAATTTGTCCCTCTT
1 GGCTTTAATCTGTCCCTCTT
30816910 TAACTTTAGG
Statistics
Matches: 621, Mismatches: 101, Indels: 70
0.78 0.13 0.09
Matches are distributed among these distances:
144 7 0.01
146 32 0.05
147 377 0.61
148 162 0.26
149 33 0.05
150 5 0.01
151 5 0.01
ACGTcount: A:0.20, C:0.17, G:0.18, T:0.45
Consensus pattern (145 bp):
GGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCCC
TCTTCAGTTTTTGGGTGTAAGATTCACATTGTTGACTTTAATCTGTCCCTCTTCGATTTTGGGTG
TAAGATTCATGTTAC
Found at i:30816732 original size:197 final size:197
Alignment explanation
Indices: 30816514--30816883 Score: 451
Period size: 197 Copynumber: 1.9 Consensus size: 197
30816504 ATCTATCCTT
* * * *
30816514 TTTTAGTTTTTGGGTGTAAGATTCATTGTTGC-GACTTTAATTTGTCACTCTTCGATTTT-GCAA
1 TTTTAGTTTTGGGGTGTAAGATTCATCGTTGCAG-CTTTAATCTATCACTCTTCGATTTTAG-AA
* * ** * * ** * *
30816577 TGTAAGATTCTTTGTTACGACTTTAATCTGTCCCTTTTTAATATTTGGGGTGTAAGATTTACCGT
64 TGCAAGACTAGTTGTTACGACTTTAATCTGTCCCTCTTCAAT-TTTAAGGTGTAAGATTCACCAT
* * *
30816642 TTCAGCTTTAATTTATCCTTCTTTAG-TTTTAGGGTATAAGATTCACCGTTGTAGCTTTAATATG
128 TTCAGATTTAATCTATCCCTC-TTAGATTTTAGGGTATAAGATTCACCGTTGTAGCTTTAATATG
30816706 TCTCTA
192 TCTCTA
* **
30816712 TTTT-GTTTTGGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCCCTCTTCGATTTTAGGGTG
1 TTTTAGTTTTGGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCACTCTTCGATTTTAGAATG
* * *
30816776 CAAGACTAGTTGTTGCGGCTTTAATCTGTCCCTCTTCAATTTTAAGGTGTAAGATTCATCATTTC
66 CAAGACTAGTTGTTACGACTTTAATCTGTCCCTCTTCAATTTTAAGGTGTAAGATTCACCATTTC
* *
30816841 AGATTTAATCTATCCCTCTTCGATTTTAGGGTGTAAGATTCAC
131 AGATTTAATCTATCCCTCTTAGATTTTAGGGTATAAGATTCAC
30816884 TGTTACGGCT
Statistics
Matches: 144, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
195 3 0.02
196 54 0.38
197 81 0.56
198 6 0.04
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.45
Consensus pattern (197 bp):
TTTTAGTTTTGGGGTGTAAGATTCATCGTTGCAGCTTTAATCTATCACTCTTCGATTTTAGAATG
CAAGACTAGTTGTTACGACTTTAATCTGTCCCTCTTCAATTTTAAGGTGTAAGATTCACCATTTC
AGATTTAATCTATCCCTCTTAGATTTTAGGGTATAAGATTCACCGTTGTAGCTTTAATATGTCTC
TA
Found at i:30816918 original size:49 final size:49
Alignment explanation
Indices: 30816078--30816919 Score: 496
Period size: 49 Copynumber: 17.1 Consensus size: 49
30816068 TCCGCTTCAG
* * * * * *
30816078 TTTTAGGGGTGCAAGATTCATTGTTGTGACTTTAATCTATCCCTCTTCGA
1 TTTTA-GGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * ** *
30816128 TTTTAAGGTGTAAGATTCACTATTATGGCTTTAATATGTCCCTCTTTGA
1 TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * *
30816177 TTTTAGGATGTAAGATTCA-TCGTTGCAGCTTTAATCTATCCCTC-TTCA
1 TTTTAGGGTGTAAGATTCACT-GTTGCGGCTTTAATCTGTCCCTCTTTGA
* ** ** *
30816225 TTTTTGTGGTGTAAGATTCACCATTGTTGCTTTAATCTGTCCCTC-TTCA
1 TTTTAG-GGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * *
30816274 TTTTTGTGGTGTAAGATTCA-TCATTACGGCTTTAATCTATCCCTCTTCGA
1 TTTTAG-GGTGTAAGATTCACT-GTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * * * *
30816324 TTTTGGGGTGTAAGATT-TCTCGTTACGACTTTAATCTATCCCTTTTTCAGT
1 TTTTAGGGTGTAAGATTCACT-GTTGCGGCTTTAATCTGTCCCTCTTT--GA
* * * *
30816375 TTTTA-GGTGTAAGA-TCATTGTTGCGACTTTAATCTGTCACACTTTGA
1 TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* ** * * * *
30816422 TTTT-GGGATGTAAGATTC-TTCGTTATGACTTTAATTTGTTCCTCTTCGA
1 TTTTAGGG-TGTAAGATTCACT-GTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * * * *
30816471 TCTTGGGGTGTAAGATTTC-CTGTTACGACTTTAATCTAT-CCTTTTTTA
1 TTTTAGGGTGTAAGA-TTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * * *
30816519 GTTTTTGGGTGTAAGATTCATTGTTGCGACTTTAATTTGTCACTCTTCGA
1 -TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
** ** * * * *
30816569 TTTT-GCAATGTAAGATTCTTTGTTACGACTTTAATCTGTCCCTTTTTAA
1 TTTTAG-GGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * * * * *
30816618 TATTTGGGGTGTAAGATTTACCGTTTCAGCTTTAATTTATCCTTCTTT-A
1 T-TTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * ** * * *
30816667 GTTTTAGGGTATAAGATTCACCGTTGTAGCTTTAATATGTCTCTATTTTG-
1 -TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCT-CTTTGA
* * * *
30816717 TTTTGGGGTGTAAGATTCA-TCGTTGCAGCTTTAATCTATCCCTCTTCGA
1 TTTTAGGGTGTAAGATTCACT-GTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * **
30816766 TTTTAGGGTGCAAGACT-AGTTGTTGCGGCTTTAATCTGTCCCTCTTCAA
1 TTTTAGGGTGTAAGATTCA-CTGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * * * *
30816815 TTTTAAGGTGTAAGATTCATCAT-TT-CAGATTTAATCTATCCCTCTTCGA
1 TTTTAGGGTGTAAGATTCA-C-TGTTGCGGCTTTAATCTGTCCCTCTTTGA
* * *
30816864 TTTTAGGGTGTAAGATTCACTGTTACGGCTTTAATTTGTCCCTCTTTAA
1 TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
*
30816913 CTTTAGG
1 TTTTAGG
30816920 ATTTAGTGTG
Statistics
Matches: 623, Mismatches: 137, Indels: 65
0.76 0.17 0.08
Matches are distributed among these distances:
47 8 0.01
48 35 0.06
49 500 0.80
50 73 0.12
51 7 0.01
ACGTcount: A:0.20, C:0.17, G:0.18, T:0.45
Consensus pattern (49 bp):
TTTTAGGGTGTAAGATTCACTGTTGCGGCTTTAATCTGTCCCTCTTTGA
Found at i:30829017 original size:15 final size:14
Alignment explanation
Indices: 30828994--30829036 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
30828984 ATAATATAAC
30828994 AAAAAATATTTAAA
1 AAAAAATATTTAAA
*
30829008 AAATAAATATTTACA
1 AAA-AAATATTTAAA
30829023 AAAAAATAATTTAA
1 AAAAAAT-ATTTAA
30829037 TAATTATCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.28
15 18 0.72
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (14 bp):
AAAAAATATTTAAA
Found at i:30829092 original size:31 final size:29
Alignment explanation
Indices: 30829057--30829114 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
30829047 AATATTATTT
*
30829057 TATTAATTTAACATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
30829088 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
30829115 GTAGATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.50
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:30835584 original size:158 final size:158
Alignment explanation
Indices: 30835283--30835588 Score: 344
Period size: 158 Copynumber: 1.9 Consensus size: 158
30835273 GTTACATGTT
* * *
30835283 ACAGCTCGTGTGAGCATTATAGGTTATATGGGTGCTAGTCTTAGATGTCCTATCGATGGATGAGG
1 ACAGCTCGTGTGAGCATTACAGGTTATATGGGTGCTAGTCTTAAATGTCCTACCGATGGATGAGG
* * * * * * * * *
30835348 TCCTGTATTGGTTGCGGATTCTTCACAGCTCATGTGAGCAGCATCGCATAGCCTAACGTCTCGAC
66 TCCGGCATTGATTACAGATCCTCCACAGCTCATGTGAGCAGCATCGCATAGCCCAACATCTCGAC
* *
30835413 TCACAACTTGTGTGAGCAGGCCGATTTC
131 CCACAACTCGTGTGAGCAGGCCGATTTC
* *
30835441 ACAGCTCGTGTGAGCATTACATGTTATATGGGTGC-AGGTTTTAAATGTCCTACCGATGGATGAG
1 ACAGCTCGTGTGAGCATTACAGGTTATATGGGTGCTA-GTCTTAAATGTCCTACCGATGGATGAG
* * * * ** * ** * *
30835505 GTTCGGCATTTATTATAGCTCCTCCACAGCTTGTGTGAGCAGTATCGTGTAGCCCCACATCTTGA
65 GTCCGGCATTGATTACAGATCCTCCACAGCTCATGTGAGCAGCATCGCATAGCCCAACATCTCGA
*
30835570 CCCACAGCTCGTGTGAGCA
130 CCCACAACTCGTGTGAGCA
30835589 TATATGGTTA
Statistics
Matches: 119, Mismatches: 28, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
157 1 0.01
158 118 0.99
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (158 bp):
ACAGCTCGTGTGAGCATTACAGGTTATATGGGTGCTAGTCTTAAATGTCCTACCGATGGATGAGG
TCCGGCATTGATTACAGATCCTCCACAGCTCATGTGAGCAGCATCGCATAGCCCAACATCTCGAC
CCACAACTCGTGTGAGCAGGCCGATTTC
Found at i:30845575 original size:17 final size:17
Alignment explanation
Indices: 30845555--30845591 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
30845545 AAATAATTAC
*
30845555 AAGAATATGAAAGGTTA
1 AAGAAGATGAAAGGTTA
*
30845572 AAGAAGATGGAAGGTTA
1 AAGAAGATGAAAGGTTA
30845589 AAG
1 AAG
30845592 GTTAAGGGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.30, T:0.19
Consensus pattern (17 bp):
AAGAAGATGAAAGGTTA
Found at i:30846027 original size:23 final size:22
Alignment explanation
Indices: 30845983--30846028 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
30845973 TTTTAATATA
* * *
30845983 GGTTTATTTGCTTTTCTGGCAT
1 GGTTTATTTGCTTCTATAGCAT
30846005 GGTTATATTTGCTTCTATAGCAT
1 GGTT-TATTTGCTTCTATAGCAT
30846028 G
1 G
30846029 ATAGTTTCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.15, C:0.13, G:0.22, T:0.50
Consensus pattern (22 bp):
GGTTTATTTGCTTCTATAGCAT
Found at i:30846799 original size:2 final size:2
Alignment explanation
Indices: 30846783--30846838 Score: 89
Period size: 2 Copynumber: 28.5 Consensus size: 2
30846773 ATTAATAATA
30846783 AT AT CAT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30846825 AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT A
30846839 AAAAAAAGGA
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.04
2 47 0.92
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:30848669 original size:17 final size:19
Alignment explanation
Indices: 30848643--30848681 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
30848633 AATTATTTAT
*
30848643 TATATGTTTTT-TT-TAAA
1 TATATATTTTTATTCTAAA
30848660 TATATATTTTTATTCTAAA
1 TATATATTTTTATTCTAAA
30848679 TAT
1 TAT
30848682 GTGAGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 2 0.11
19 7 0.37
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
TATATATTTTTATTCTAAA
Found at i:30856597 original size:29 final size:30
Alignment explanation
Indices: 30856528--30856588 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 30
30856518 TTAATAACAC
*
30856528 AATAAAATAATATCATATAATCACGGTAATA
1 AATAAAATAATA-CATATAATCACAGTAATA
*
30856559 AATAAAATAATA-ATATAATCATAGTAATA
1 AATAAAATAATACATATAATCACAGTAATA
30856588 A
1 A
30856589 TGACAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 16 0.57
31 12 0.43
ACGTcount: A:0.59, C:0.07, G:0.05, T:0.30
Consensus pattern (30 bp):
AATAAAATAATACATATAATCACAGTAATA
Found at i:30858380 original size:50 final size:50
Alignment explanation
Indices: 30858299--30858736 Score: 261
Period size: 49 Copynumber: 8.9 Consensus size: 50
30858289 CTGCAACATC
* ** * *
30858299 AGGGGTATAAGATTCACCTTTACGTCTTCAATCTGTCCCTCTACAGTTTT
1 AGGGGTGTAAGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * * * *
30858349 AGGGGTGTACAG-TTCGTCTTTACGACATCAATCTATCTCTCTTCGGGTTT
1 AGGGGTGTA-AGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * * * * *
30858399 AGAGGTGTAAGATTCGCCGTTGAAG-CTTTAATCTGTTCCTCTTCAGTTTT
1 AGGGGTGTAAGATTCGTC-TTTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * * * * *
30858449 AAGGGTGTAAGATTCGTCATTGCGACTTTAATCTGTCCCTATTCAATTTT
1 AGGGGTGTAAGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * ** * * *
30858499 A-GGGTGTAAGATCCAT-TGTTGTGGCTTTAATCTGTCCCTCTTCA-ATTT
1 AGGGGTGTAAGATTCGTCT-TTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * * * *
30858547 A-AGGTGTAAGATTCGTCATTACGATTTTAATCTGTCCCTCTTCAATTTT
1 AGGGGTGTAAGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
*** ** * * * * *
30858596 A-CAATGTAAGATTCACCGTTGC-AGCTTTAATCTATCCGTCTTC-GATTTT
1 AGGGGTGTAAGATTCGTCTTTACGA-CTTCAATCTGTCCCTCTTCAG-TTTT
* * * *
30858645 A-GGGTGTAAGATTCATCGTTACAACTTTAATCTGTCCCTCTTCAGTTTT
1 AGGGGTGTAAGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
* * * * *
30858694 A-GAGTGTAAGATTCAT-TGTTACGGCTTTAATCTATCCCTCTTC
1 AGGGGTGTAAGATTCGTCT-TTACGACTTCAATCTGTCCCTCTTC
30858737 GAATTTACTA
Statistics
Matches: 306, Mismatches: 70, Indels: 25
0.76 0.17 0.06
Matches are distributed among these distances:
48 39 0.13
49 153 0.50
50 108 0.35
51 6 0.02
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (50 bp):
AGGGGTGTAAGATTCGTCTTTACGACTTCAATCTGTCCCTCTTCAGTTTT
Found at i:30858527 original size:49 final size:49
Alignment explanation
Indices: 30858396--30859084 Score: 503
Period size: 49 Copynumber: 14.1 Consensus size: 49
30858386 TCTCTTCGGG
** ** * *
30858396 TTTAGAGGTGTAAGATTCGCCGTTGAAGCTTTAATCTGTTCCTCTTCAGT
1 TTTAG-GGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * *
30858446 TTTAAGGGTGTAAGATTCGTCATTGCGACTTTAATCTGTCCCTATTCAAT
1 TTT-AGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * *
30858496 TTTAGGGTGTAAGATCCATTGTTGTGGCTTTAATCTGTCCCTCTTCAA-
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * * **
30858544 TTTAAGGTGTAAGATTCGTCATTACGATTTTAATCTGTCCCTCTTCAAT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
*** * * * * *
30858593 TTTACAATGTAAGATTCACCGTTGCAGCTTTAATCTATCCGTCTTCGAT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* ** *
30858642 TTTAGGGTGTAAGATTCATCGTTACAACTTTAATCTGTCCCTCTTCAGT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * *
30858691 TTTAGAGTGTAAGATTCATTGTTACGGCTTTAATCTATCCCTCTTCGAA-
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTC-AAT
*** * * * * * * * *
30858740 TTTACTATGTAAAATTCTTCGTTACGACTTTAATCTATCCCTTTTTAGT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * * * ** * **
30858789 CTTGGGGTGTAAAATTCACCATTGTAGCTTTAATTTGTCCCTCTT-GGT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * ** * * * *
30858837 TTT-GGGTATAAGGTTCATCGTTGTAGCTTTAATATGTCCTTTTTCTAT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * * *
30858885 TTT-GAGGTGTAAGATTCACCATTGCAGCTTTAATTTGTCCCTCTTCGAT
1 TTTAG-GGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* ** * * * *
30858934 TTTAGGGTATAAGATTCATTATTACGGCTTTAATTTGTCCTTCTTC-AG
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
* * * *
30858982 TTGAAGGTGTAAGATTCATTGTTGCGGCTTTAATCTGTCCCT-TTCGAT
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
** * * * *
30859030 TTTAGGGTGTAAGATTCGCCATTACGACTTTAAT-TGGTCCCTCTTCAAC
1 TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCT-GTCCCTCTTCAAT
30859079 TTTAGG
1 TTTAGG
30859085 ATTTGGTATG
Statistics
Matches: 505, Mismatches: 124, Indels: 21
0.78 0.19 0.03
Matches are distributed among these distances:
47 37 0.07
48 118 0.23
49 304 0.60
50 44 0.09
51 2 0.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (49 bp):
TTTAGGGTGTAAGATTCATCGTTGCGGCTTTAATCTGTCCCTCTTCAAT
Found at i:30858694 original size:98 final size:98
Alignment explanation
Indices: 30858306--30859076 Score: 625
Period size: 98 Copynumber: 7.9 Consensus size: 98
30858296 ATCAGGGGTA
* * * * * *
30858306 TAAGATTCACCTTTAC-GTCTTCAATCTGTCCCTCTAC-AGTTTTAGGGGTGTACAG-TTCGTCT
1 TAAGATTCACCGTTGCAG-CTTTAATCTGTCCCTCTTCGA-TTTTA-GGGTGTA-AGATTCATCA
* * * * * *
30858368 TTACGACATCAATCTATCTCTCTTCGGGTTTAGAGGTG
62 TTACGACTTTAATCTGTCCCTCTTCAGTTTTAGA-GTG
* * * *
30858406 TAAGATTCGCCGTTGAAGCTTTAATCTGTTCCTCTTC-AGTTTTAAGGGTGTAAGATTCGTCATT
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGA-TTTT-AGGGTGTAAGATTCATCATT
* * * *
30858470 GCGACTTTAATCTGTCCCTATTCAATTTTAGGGTG
64 ACGACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
* ** ** * * *
30858505 TAAGATCCATTGTTGTGGCTTTAATCTGTCCCTCTTC-AATTTAAGGTGTAAGATTCGTCATTAC
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
* * * *
30858569 GATTTTAATCTGTCCCTCTTCAATTTTACAATG
66 GACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
* * *
30858602 TAAGATTCACCGTTGCAGCTTTAATCTATCCGTCTTCGATTTTAGGGTGTAAGATTCATCGTTAC
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
*
30858667 AACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
66 GACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
** * * * * *** * * *
30858700 TAAGATTCATTGTTACGGCTTTAATCTATCCCTCTTCGAATTTACTATGTAAAATTCTTCGTTAC
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
* * * * * *
30858765 GACTTTAATCTATCCCTTTTTAGTCTTGGGGTG
66 GACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
* * * * * * * *
30858798 TAAAATTCACCATTGTAGCTTTAATTTGTCCCTCTT-GGTTTT-GGGTATAAGGTTCATCGTT--
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
* * *
30858859 GTAGCTTTAATATGTCCTTTTTCTA-TTTT-GAGGTG
66 G-A-CTTTAATCTGTCCCTCTTC-AGTTTTAGA-GTG
* * * *
30858894 TAAGATTCACCATTGCAGCTTTAATTTGTCCCTCTTCGATTTTAGGGTATAAGATTCATTATTAC
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
* * * **
30858959 GGCTTTAATTTGTCCTTCTTCAGTTGAAG-GTG
66 GACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
** * **
30858991 TAAGATTCATTGTTGCGGCTTTAATCTGTCCCT-TTCGATTTTAGGGTGTAAGATTCGCCATTAC
1 TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
30859055 GACTTTAAT-TGGTCCCTCTTCA
66 GACTTTAATCT-GTCCCTCTTCA
30859077 ACTTTAGGAT
Statistics
Matches: 543, Mismatches: 113, Indels: 34
0.79 0.16 0.05
Matches are distributed among these distances:
94 1 0.00
95 3 0.01
96 112 0.21
97 120 0.22
98 196 0.36
99 37 0.07
100 72 0.13
101 2 0.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.42
Consensus pattern (98 bp):
TAAGATTCACCGTTGCAGCTTTAATCTGTCCCTCTTCGATTTTAGGGTGTAAGATTCATCATTAC
GACTTTAATCTGTCCCTCTTCAGTTTTAGAGTG
Found at i:30858951 original size:145 final size:145
Alignment explanation
Indices: 30858401--30859084 Score: 344
Period size: 145 Copynumber: 4.7 Consensus size: 145
30858391 TCGGGTTTAG
* ** * * * *
30858401 AGGTGTAAGATTCGCCGTTGAAGCTTTAATCTGTTCCTCTTC-AGTTTTAAGGGTGTAAGATTCG
1 AGGTATAAGATTCATCGTTGCAGCTTTAATATGTCCCT-TTCGA-TTTT-AGGGTGTAAGATTCA
* * * * * * * *** ***
30858465 TCATTGCGACTTTAATCT-GTCCCTATTCAATTTTAGGGTGTAAGATCCATTGTTGTGGCTTTAA
63 CCATTACGACTTTAAT-TGGTCCCTCTTCAACTTTAGGGTATAAAATTCACCATTACAGCTTTAA
* * *
30858529 TCTGTCCCTCTTCAATTTA
127 TTTGTCCCTCTTCAGTTGA
* * * * * * * ***
30858548 AGGTGTAAGATTCGTCATTAC-GATTTTAATCTGTCCCTCTTCAATTTTACAATGTAAGATTCAC
1 AGGTATAAGATTCATCGTTGCAG-CTTTAATATGTCCCT-TTCGATTTTAGGGTGTAAGATTCAC
* * * * * * * * * * *
30858612 CGTTGC-AGCTTTAATCT-ATCCGTCTTCGATTTTAGGGTGTAAGATTCATCGTTACAACTTTAA
64 CATTACGA-CTTTAAT-TGGTCCCTCTTCAACTTTAGGGTATAAAATTCACCATTACAGCTTTAA
* **
30858675 TCTGTCCCTCTTCAGTTTT
127 TTTGTCCCTCTTCAGTTGA
* * * * * * * *** * **
30858694 AGAGTGTAAGATTCATTGTTACGGCTTTAATCTATCCCTCTTCGAATTTACTATGTAAAATTCTT
1 AG-GTATAAGATTCATCGTTGCAGCTTTAATATGTCCCT-TTCGATTTTAGGGTGTAAGATTCAC
* * ** * * * **
30858759 CGTTACGACTTTAATCT-ATCCCT-TTTTAGTCTTGGGGTGTAAAATTCACCATTGTAGCTTTAA
64 CATTACGACTTTAAT-TGGTCCCTCTTCAACT-TTAGGGTATAAAATTCACCATTACAGCTTTAA
* **
30858822 TTTGTCCCTCTT-GGTTTT
127 TTTGTCCCTCTTCAGTTGA
* * * * *
30858840 GGGTATAAGGTTCATCGTTGTAGCTTTAATATGTCCTTTTTCTATTTT-GAGGTGTAAGATTCAC
1 AGGTATAAGATTCATCGTTGCAGCTTTAATATGTCC-CTTTCGATTTTAG-GGTGTAAGATTCAC
* * * * * ** *
30858904 CATTGC-AGCTTTAATTTGTCCCTCTTCGATTTTAGGGTATAAGATTCATTATTACGGCTTTAAT
64 CATTACGA-CTTTAATTGGTCCCTCTTCAACTTTAGGGTATAAAATTCACCATTACAGCTTTAAT
*
30858968 TTGTCCTTCTTCAGTTGA
128 TTGTCCCTCTTCAGTTGA
* * * * *
30858986 AGGTGTAAGATTCATTGTTGCGGCTTTAATCTGTCCCTTTCGATTTTAGGGTGTAAGATTCGCCA
1 AGGTATAAGATTCATCGTTGCAGCTTTAATATGTCCCTTTCGATTTTAGGGTGTAAGATTCACCA
30859051 TTACGACTTTAATTGGTCCCTCTTCAACTTTAGG
66 TTACGACTTTAATTGGTCCCTCTTCAACTTTAGG
30859085 ATTTGGTATG
Statistics
Matches: 423, Mismatches: 99, Indels: 32
0.76 0.18 0.06
Matches are distributed among these distances:
144 2 0.00
145 146 0.35
146 130 0.31
147 142 0.34
148 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (145 bp):
AGGTATAAGATTCATCGTTGCAGCTTTAATATGTCCCTTTCGATTTTAGGGTGTAAGATTCACCA
TTACGACTTTAATTGGTCCCTCTTCAACTTTAGGGTATAAAATTCACCATTACAGCTTTAATTTG
TCCCTCTTCAGTTGA
Found at i:30877623 original size:23 final size:23
Alignment explanation
Indices: 30877596--30877719 Score: 135
Period size: 23 Copynumber: 5.4 Consensus size: 23
30877586 GCTAGGGAAA
*
30877596 CAGTAAGCACGCACAGTGCAAAT
1 CAGTAAGCACACACAGTGCAAAT
* *
30877619 CAGTAGGCACACGCAGTGCAAAGT
1 CAGTAAGCACACACAGTGCAAA-T
30877643 -AGTAAGCACACACAGTGCAAAT
1 CAGTAAGCACACACAGTGCAAAT
** * **
30877665 CAGTAAGCACGTATAGTGTGAAT
1 CAGTAAGCACACACAGTGCAAAT
*
30877688 CAGTAAGCACACACAGTGCTGAA-
1 CAGTAAGCACACACAGTGC-AAAT
30877711 CAGTAAGCA
1 CAGTAAGCA
30877720 TGCTAATGTT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.01
23 79 0.94
24 4 0.05
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (23 bp):
CAGTAAGCACACACAGTGCAAAT
Found at i:30891016 original size:47 final size:47
Alignment explanation
Indices: 30890962--30891055 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
30890952 CTAAACATCG
*
30890962 AGCATCATAATATGTTATATAACTTCATCAGATTTGGCATTAAAAAA
1 AGCATCATAATATGTTATATAACTTCACCAGATTTGGCATTAAAAAA
*
30891009 AGCATCATAATATGTTATATAACTTCACCAGATTTGGCATTATAAAA
1 AGCATCATAATATGTTATATAACTTCACCAGATTTGGCATTAAAAAA
30891056 GGGCTTCTCC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (47 bp):
AGCATCATAATATGTTATATAACTTCACCAGATTTGGCATTAAAAAA
Found at i:30891809 original size:151 final size:151
Alignment explanation
Indices: 30891529--30891842 Score: 493
Period size: 151 Copynumber: 2.1 Consensus size: 151
30891519 TTGTCTAAAA
* *
30891529 TTAGACAAAATATATTTGAAGGTAATGGCTTCACCCGAATTCGAATCGGAGACCAACAGTGTGTT
1 TTAGACAAAATATATTTGAAGGCAATGGCTTCACCCGAACTCGAATCGGAGACCAACAGTGTGTT
* * * *
30891594 AAACTGACGTGTTTTGTTAGACAATAAAATTTGGTTTGGGATGCTGCTCAAAACGTGGGTGATTA
66 AAACTGACGTGTTTTATTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAACATGGGCGATTA
30891659 CATGTTGATATCGTGGCATGC
131 CATGTTGATATCGTGGCATGC
* **
30891680 TTAGACAAAATATATTTGAAGGCAATGGCTTCACCCGGACTCGAATCGGAGACCTTCAGTGTGTT
1 TTAGACAAAATATATTTGAAGGCAATGGCTTCACCCGAACTCGAATCGGAGACCAACAGTGTGTT
* * *
30891745 AGACTGACGTGTTTTATTATACAATAAAGTTTGGTTTGGGATGCTACTCAAAACATGGGCGATTA
66 AAACTGACGTGTTTTATTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAACATGGGCGATTA
* *
30891810 CATGTTGATATTGTTGCATGC
131 CATGTTGATATCGTGGCATGC
*
30891831 TTAGAGAAAATA
1 TTAGACAAAATA
30891843 ACATAGGAGG
Statistics
Matches: 148, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
151 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.32
Consensus pattern (151 bp):
TTAGACAAAATATATTTGAAGGCAATGGCTTCACCCGAACTCGAATCGGAGACCAACAGTGTGTT
AAACTGACGTGTTTTATTAGACAATAAAATTTGGTTTGGGATGCTACTCAAAACATGGGCGATTA
CATGTTGATATCGTGGCATGC
Found at i:30903595 original size:49 final size:48
Alignment explanation
Indices: 30903542--30903650 Score: 121
Period size: 49 Copynumber: 2.2 Consensus size: 48
30903532 CGAAGTAATA
* *
30903542 AAGGGAAAGGTTTAAGTCACAACGACGAACCTTGTACCTCGAAAGCA-TG
1 AAGGGAAAGGTTTAAGCCACAACGACGAACCTAGTACCTCG-AAG-ATTG
** * * *
30903591 AAGGGAAAAATTTAAGCCACAACGGCGAATCTAGTACCTTGAAGATTTG
1 AAGGGAAAGGTTTAAGCCACAACGACGAACCTAGTACCTCGAAGA-TTG
30903640 AAGGGAAAGGT
1 AAGGGAAAGGT
30903651 GACGATCGCA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
47 1 0.02
48 3 0.06
49 45 0.92
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.19
Consensus pattern (48 bp):
AAGGGAAAGGTTTAAGCCACAACGACGAACCTAGTACCTCGAAGATTG
Found at i:30903888 original size:50 final size:50
Alignment explanation
Indices: 30903821--30903982 Score: 141
Period size: 50 Copynumber: 3.2 Consensus size: 50
30903811 AATTCCTATC
*
30903821 CTCT-TGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTAT
1 CTCTCTGAAGTTACAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTAT
* *** * *** * * * *
30903870 CTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACATCAATTC-CTAT
1 CTCTCTGAAGTTACAGTAA-AGTTGGATTAA-AAAC-AATAGCAAGTCTTTAT
*
30903922 C-CTCTTGAAGTTGCAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTAT
1 CTCTC-TGAAGTTACAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTAT
30903972 CTCTCTGAAGT
1 CTCTCTGAAGT
30903983 AGTAGTAAGA
Statistics
Matches: 80, Mismatches: 26, Indels: 13
0.67 0.22 0.11
Matches are distributed among these distances:
49 12 0.15
50 23 0.29
51 20 0.25
52 17 0.21
53 8 0.10
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (50 bp):
CTCTCTGAAGTTACAGTAAAGTTGGATTAAAAACAATAGCAAGTCTTTAT
Found at i:30903916 original size:102 final size:102
Alignment explanation
Indices: 30903740--30904110 Score: 602
Period size: 102 Copynumber: 3.7 Consensus size: 102
30903730 GAAGTCATAG
* * * * *
30903740 TGGATCAAAAACAATAACAAGTCTTTATCTCTCTGATGTTGTAGTAATAGCAAGATGAAGCTTCA
1 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCA
30903805 AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
66 AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
30903842 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCA
1 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCA
30903907 AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
66 AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
30903944 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAG-TAGTAGTAAGAGCAAGATGAAGCTTC
1 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTA-TAGTAAGAGCAAGATGAAGCTTC
30904008 AAACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
65 AAACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
*
30904046 TGG----------ATAGCAAGTCTTTATCTCTCTAAAGTTATAGTAAGAGCAAGATGAAGCTTCA
1 TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCA
30904101 AACATCAATT
66 AACATCAATT
30904111 ATCATTTTAC
Statistics
Matches: 261, Mismatches: 6, Indels: 14
0.93 0.02 0.05
Matches are distributed among these distances:
92 58 0.22
93 2 0.01
101 2 0.01
102 199 0.76
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (102 bp):
TGGATTAAAAACAATAGCAAGTCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCA
AACATCAATTCCTATCCTCTTGAAGTTGCAGTAAAGT
Found at i:30904203 original size:29 final size:29
Alignment explanation
Indices: 30904115--30904351 Score: 126
Period size: 29 Copynumber: 8.1 Consensus size: 29
30904105 TCAATTATCA
* *
30904115 TTTTACCCCCGAAC-TTCCAAAATTCTAT
1 TTTTACCCCCAAACTTTCCAAAATTCCAT
* * * ** * *
30904143 TCTTAACCCAAAACTTTTTGAAATTTACAT
1 TTTTACCCCCAAAC-TTTCCAAAATTCCAT
*
30904173 TTTTACCCCCAAACTTTCCCAAATTCCAT
1 TTTTACCCCCAAACTTTCCAAAATTCCAT
* * **
30904202 TTTTAACCTCAATTTTTCCAATAATTACCA-
1 TTTTACCCCCAAACTTTCCAA-AATT-CCAT
** *
30904232 TTTTACCCCTGAACTTTCCAAATTTCCAT
1 TTTTACCCCCAAACTTTCCAAAATTCCAT
* * ** *
30904261 TTTTA-ACCCTATTTTTCCAAAAACTACCA-
1 TTTTACCCCCAAACTTTCC-AAAA-TTCCAT
* *
30904290 TTTTACCCTCAAAC-TTCTCAAAATTTCA-
1 TTTTACCCCCAAACTTTC-CAAAATTCCAT
* *
30904318 TTTTAACCCTAAACTTTCCCAAAATTACCAT
1 TTTTACCCCCAAACTTT-CCAAAATT-CCAT
30904349 TTT
1 TTT
30904352 GCCCTCGAGC
Statistics
Matches: 149, Mismatches: 47, Indels: 23
0.68 0.21 0.11
Matches are distributed among these distances:
28 35 0.23
29 58 0.39
30 50 0.34
31 6 0.04
ACGTcount: A:0.31, C:0.28, G:0.01, T:0.39
Consensus pattern (29 bp):
TTTTACCCCCAAACTTTCCAAAATTCCAT
Found at i:30904289 original size:58 final size:58
Alignment explanation
Indices: 30904173--30904351 Score: 204
Period size: 58 Copynumber: 3.1 Consensus size: 58
30904163 AAATTTACAT
* * *
30904173 TTTTACCCCCAAACTTTCCCAAA-TTCCATTTTTAACCTCAATTTTTCCAATAATTACCA
1 TTTTACCCCTAAACTTT-CCAAATTTCCATTTTTAACC-CTATTTTTCCAAAAATTACCA
* *
30904232 TTTTACCCCTGAACTTTCCAAATTTCCATTTTTAACCCTATTTTTCCAAAAACTACCA
1 TTTTACCCCTAAACTTTCCAAATTTCCATTTTTAACCCTATTTTTCCAAAAATTACCA
* ** *
30904290 TTTTA-CCCTCAAACTTCTCAAAATTT-CA-TTTTAACCCTAAACTTTCCCAAAATTACCA
1 TTTTACCCCT-AAACTT-TCCAAATTTCCATTTTTAACCCT-ATTTTTCCAAAAATTACCA
30904348 TTTT
1 TTTT
30904352 GCCCTCGAGC
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
57 14 0.13
58 54 0.51
59 37 0.35
ACGTcount: A:0.31, C:0.29, G:0.01, T:0.40
Consensus pattern (58 bp):
TTTTACCCCTAAACTTTCCAAATTTCCATTTTTAACCCTATTTTTCCAAAAATTACCA
Found at i:30904356 original size:29 final size:30
Alignment explanation
Indices: 30904173--30904351 Score: 133
Period size: 29 Copynumber: 6.1 Consensus size: 30
30904163 AAATTTACAT
* *
30904173 TTTTACCCCCAAACTTTCCC-AAATT-CCA
1 TTTTAACCCTAAACTTTCCCAAAATTACCA
* * *
30904201 TTTTTAA-CCTCAATTTTTCCAATAATTACCA
1 -TTTTAACCCTAAACTTTCCCAA-AATTACCA
* * *
30904232 TTTTACCCCTGAACTTT-CC-AAATTTCCA
1 TTTTAACCCTAAACTTTCCCAAAATTACCA
** * *
30904260 TTTTTAACCCT-ATTTTTCCAAAAACTACCA
1 -TTTTAACCCTAAACTTTCCCAAAATTACCA
* *
30904290 TTTT-ACCCTCAAAC-TTCTCAAAATT-TCA
1 TTTTAACCCT-AAACTTTCCCAAAATTACCA
30904318 TTTTAACCCTAAACTTTCCCAAAATTACCA
1 TTTTAACCCTAAACTTTCCCAAAATTACCA
30904348 TTTT
1 TTTT
30904352 GCCCTCGAGC
Statistics
Matches: 115, Mismatches: 23, Indels: 23
0.71 0.14 0.14
Matches are distributed among these distances:
28 35 0.30
29 44 0.38
30 25 0.22
31 11 0.10
ACGTcount: A:0.31, C:0.29, G:0.01, T:0.40
Consensus pattern (30 bp):
TTTTAACCCTAAACTTTCCCAAAATTACCA
Found at i:30904357 original size:58 final size:58
Alignment explanation
Indices: 30904107--30904351 Score: 203
Period size: 58 Copynumber: 4.2 Consensus size: 58
30904097 TTCAAACATC
* * * * * ***
30904107 AATTATCATTTTACCCCCGAACTTCCAAAA-TTCTATTCTTAACCCAAAACTTTTTGAA
1 AATTACCATTTTACCCCCAAACTTTCAAAATTTC-ATTTTTAACCCTAAACTTTCCCAA
* * * * * *
30904165 ATTTA-CATTTTTACCCCCAAACTTTCCCAAATTCCATTTTTAA-CCTCAATTTTTCCAA
1 AATTACCA-TTTTACCCCCAAACTTT-CAAAATTTCATTTTTAACCCTAAACTTTCCCAA
** * ** *
30904223 TAATTACCATTTTACCCCTGAACTTTCCAAATTTCCATTTTTAACCCT-ATTTTTCCAAA
1 -AATTACCATTTTACCCCCAAACTTTCAAAATTT-CATTTTTAACCCTAAACTTTCCCAA
* *
30904282 AACTACCATTTTACCCTCAAACTTCTCAAAATTTCA-TTTTAACCCTAAACTTTCCCAA
1 AATTACCATTTTACCCCCAAACTT-TCAAAATTTCATTTTTAACCCTAAACTTTCCCAA
30904340 AATTACCATTTT
1 AATTACCATTTT
30904352 GCCCTCGAGC
Statistics
Matches: 151, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
57 12 0.08
58 77 0.51
59 55 0.36
60 7 0.05
ACGTcount: A:0.32, C:0.28, G:0.01, T:0.39
Consensus pattern (58 bp):
AATTACCATTTTACCCCCAAACTTTCAAAATTTCATTTTTAACCCTAAACTTTCCCAA
Found at i:30904397 original size:28 final size:28
Alignment explanation
Indices: 30904336--30904397 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
30904326 CTAAACTTTC
* *
30904336 CCAAAATTACCATTTTGCCCTCGAGCGT
1 CCAAAATTACCATTTTACCCTCGAGCAT
* *
30904364 CAAAAATTACCATTTTACCCTCGAGTAT
1 CCAAAATTACCATTTTACCCTCGAGCAT
30904392 CCAAAA
1 CCAAAA
30904398 ATCACATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (28 bp):
CCAAAATTACCATTTTACCCTCGAGCAT
Found at i:30904405 original size:28 final size:28
Alignment explanation
Indices: 30904338--30904407 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
30904328 AAACTTTCCC
* * *
30904338 AAAATTACCATTTTGCCCTCGAGCGTCA
1 AAAATCACCATTTTACCCTCGAGCATCA
* *
30904366 AAAATTACCATTTTACCCTCGAGTATCCA
1 AAAATCACCATTTTACCCTCGAGCAT-CA
30904395 AAAATCA-CATTTT
1 AAAATCACCATTTT
30904408 CAGACCCCGA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 29 0.78
29 8 0.22
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (28 bp):
AAAATCACCATTTTACCCTCGAGCATCA
Found at i:30908148 original size:47 final size:46
Alignment explanation
Indices: 30908076--30908170 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 46
30908066 AGGAGAAGCC
* * *
30908076 CTTTTTTAATGTCAAATCTGATGAAGTTATATAATATATTATGATG
1 CTTTTTTAATGCCAAAGCTGATGAAGTTATATAACATATTATGATG
*
30908122 CTTTTTATAATGCCAAAGCTGGTGAAGTTATATAACATATTATGATG
1 CTTTTT-TAATGCCAAAGCTGATGAAGTTATATAACATATTATGATG
30908169 CT
1 CT
30908171 CGATGTTTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 6 0.14
47 38 0.86
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (46 bp):
CTTTTTTAATGCCAAAGCTGATGAAGTTATATAACATATTATGATG
Found at i:30912234 original size:47 final size:47
Alignment explanation
Indices: 30912142--30912248 Score: 124
Period size: 47 Copynumber: 2.3 Consensus size: 47
30912132 GTCACAGTAA
* * * * * *
30912142 TGCAATTAAACTGCCACTTAATAATATTATGGATAAGCAATCACTTT
1 TGCAAATAAACTGCCACTTAAAAATATTATGAACAAACAACCACTTT
* * * *
30912189 TGTAGATAAACTGCCACTTAAAAATATTGTGAACAAACCACCACTTT
1 TGCAAATAAACTGCCACTTAAAAATATTATGAACAAACAACCACTTT
30912236 TGCAAATAAACTG
1 TGCAAATAAACTG
30912249 TCATTTCTTC
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (47 bp):
TGCAAATAAACTGCCACTTAAAAATATTATGAACAAACAACCACTTT
Found at i:30912553 original size:15 final size:14
Alignment explanation
Indices: 30912523--30912549 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30912513 CTAAAAACCA
30912523 AACCAAAAAATAAT
1 AACCAAAAAATAAT
30912537 AACCAAAAAATAA
1 AACCAAAAAATAA
30912550 ATAAGAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (14 bp):
AACCAAAAAATAAT
Found at i:30913064 original size:16 final size:16
Alignment explanation
Indices: 30913043--30913074 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30913033 TATATTTTTA
*
30913043 TATTTTTTTTTTATTT
1 TATTTTATTTTTATTT
30913059 TATTTTATTTTTATTT
1 TATTTTATTTTTATTT
30913075 GTTTCGAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (16 bp):
TATTTTATTTTTATTT
Found at i:30914018 original size:14 final size:14
Alignment explanation
Indices: 30913998--30914026 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
30913988 ATCCTTTCAT
30913998 ATTTTTTT-AATTA
1 ATTTTTTTAAATTA
30914011 ATTTTTTTAAATTA
1 ATTTTTTTAAATTA
30914025 AT
1 AT
30914027 CCCATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTTTTAAATTA
Found at i:30917597 original size:29 final size:30
Alignment explanation
Indices: 30917555--30917626 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
30917545 AATCGGATTG
* *
30917555 AAAATGAGACTTTTTAGACACC-CGA-GGGC
1 AAAATGATAATTTTTAGAC-CCTCGAGGGGC
30917584 AAAATGATAA-TTTTAGACCCTCGAGGGGC
1 AAAATGATAATTTTTAGACCCTCGAGGGGC
*
30917613 AAAATGGTAATTTT
1 AAAATGATAATTTT
30917627 AGGAAAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.05
28 11 0.30
29 21 0.57
30 3 0.08
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (30 bp):
AAAATGATAATTTTTAGACCCTCGAGGGGC
Found at i:30917608 original size:28 final size:29
Alignment explanation
Indices: 30917566--30917628 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
30917556 AAATGAGACT
30917566 TTTTAGACACCCGA-GGGCAAAATGATAA
1 TTTTAGACACCCGAGGGGCAAAATGATAA
*
30917594 TTTTAGAC-CCTCGAGGGGCAAAATGGTAA
1 TTTTAGACACC-CGAGGGGCAAAATGATAA
30917623 TTTTAG
1 TTTTAG
30917629 GAAAATTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 2 0.06
28 11 0.34
29 19 0.59
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (29 bp):
TTTTAGACACCCGAGGGGCAAAATGATAA
Found at i:30917742 original size:59 final size:58
Alignment explanation
Indices: 30917666--30917864 Score: 213
Period size: 59 Copynumber: 3.4 Consensus size: 58
30917656 AGATATTCGA
* *
30917666 GGGTAAAATGGTGATTTTTAGAAAAATTGGAATCAAAAACGGAATTTTTGGACATCTGG
1 GGGTAAAATGGTAATTTTTAGAAAAATTGGAATCAAAAATGGAATTTTTGGACAT-TGG
* * * *
30917725 GGGTAAAATGGTAATTTTTACAAAAA-TCGAGATCAAAAATGAAATTTTTGTACATTGG
1 GGGTAAAATGGTAATTTTTAGAAAAATTGGA-ATCAAAAATGGAATTTTTGGACATTGG
* * ** * ** *
30917783 GGGAAAAAGGGTAATTTTT-GAAAGTTTTGGAGTTTAAAATGGAATTTTTGGACATTCAG
1 GGGTAAAATGGTAATTTTTAGAAA-AATTGGAATCAAAAATGGAATTTTTGGACATT-GG
*
30917842 GGGTAAAATAGTAATTTTTAGAA
1 GGGTAAAATGGTAATTTTTAGAA
30917865 GTTTTAGGGT
Statistics
Matches: 114, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
57 3 0.03
58 43 0.38
59 65 0.57
60 3 0.03
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (58 bp):
GGGTAAAATGGTAATTTTTAGAAAAATTGGAATCAAAAATGGAATTTTTGGACATTGG
Found at i:30917822 original size:58 final size:58
Alignment explanation
Indices: 30917760--30917888 Score: 147
Period size: 58 Copynumber: 2.2 Consensus size: 58
30917750 ATCGAGATCA
* * *
30917760 AAAATGAAATTTTTGTACATT-GGGGGAAAAAGGGTAATTTTT-GAAAGTTTT-GGAGTTT
1 AAAATGAAATTTTTGGACATTCAGGGGAAAAAGAGTAATTTTTAG-AAGTTTTAGG-G-TT
* * *
30917818 AAAATGGAATTTTTGGACATTCAGGGGTAAAATAGTAATTTTTAGAAGTTTTAGGGTT
1 AAAATGAAATTTTTGGACATTCAGGGGAAAAAGAGTAATTTTTAGAAGTTTTAGGGTT
*
30917876 AAAATCAAATTTT
1 AAAATGAAATTTT
30917889 GAAAAGTTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
58 32 0.53
59 25 0.42
60 3 0.05
ACGTcount: A:0.36, C:0.03, G:0.22, T:0.38
Consensus pattern (58 bp):
AAAATGAAATTTTTGGACATTCAGGGGAAAAAGAGTAATTTTTAGAAGTTTTAGGGTT
Found at i:30917874 original size:29 final size:29
Alignment explanation
Indices: 30917840--30917999 Score: 109
Period size: 30 Copynumber: 5.4 Consensus size: 29
30917830 TTGGACATTC
* *
30917840 AGGGGTAAAATAGTAATTTTTAGAAGTTTT
1 AGGGGTAAAATAGTAATTTTGAAAAG-TTT
*
30917870 AGGGTTAAAATCA--AATTTTGAAAAGTTT
1 AGGGGTAAAAT-AGTAATTTTGAAAAGTTT
* *
30917898 AGGGGTAAAA-ATGTAATTTTCAAAAAGTTC
1 AGGGGTAAAATA-GTAATTTT-GAAAAGTTT
*
30917928 AGAGGTCAAAAT-GTAATTGTTGGAAAAGTTT
1 AGGGGT-AAAATAGTAATT-TT-GAAAAGTTT
* *
30917959 A-AGGTCAAAATA-TAATTTTGGAAAAGTAT
1 AGGGGT-AAAATAGTAATTTT-GAAAAGTTT
30917988 -GGGGTTAAAATA
1 AGGGG-TAAAATA
30918000 TGATTTTTAG
Statistics
Matches: 107, Mismatches: 12, Indels: 23
0.75 0.08 0.16
Matches are distributed among these distances:
26 1 0.01
28 12 0.11
29 35 0.33
30 44 0.41
31 15 0.14
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (29 bp):
AGGGGTAAAATAGTAATTTTGAAAAGTTT
Found at i:30918000 original size:29 final size:30
Alignment explanation
Indices: 30917840--30918006 Score: 123
Period size: 29 Copynumber: 5.7 Consensus size: 30
30917830 TTGGACATTC
* *
30917840 AGGGGT-AAAATAGTAATTTT-TAGAAGTTTT
1 AGGGGTCAAAATA-TAATTTTGGAAAAG-TTT
*
30917870 A-GGGTTAAAATCA-AATTTT-GAAAAGTTT
1 AGGGGTCAAAAT-ATAATTTTGGAAAAGTTT
* * ** *
30917898 AGGGGTAAAAATGTAATTTTCAAAAAGTTC
1 AGGGGTCAAAATATAATTTTGGAAAAGTTT
* *
30917928 AGAGGTCAAAATGTAATTGTTGGAAAAGTTT
1 AGGGGTCAAAATATAATT-TTGGAAAAGTTT
* *
30917959 A-AGGTCAAAATATAATTTTGGAAAAGTAT
1 AGGGGTCAAAATATAATTTTGGAAAAGTTT
* *
30917988 -GGGGTTAAAATATGATTTT
1 AGGGGTCAAAATATAATTTT
30918007 TAGACAGTTT
Statistics
Matches: 114, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
28 4 0.04
29 55 0.48
30 44 0.39
31 11 0.10
ACGTcount: A:0.41, C:0.03, G:0.22, T:0.35
Consensus pattern (30 bp):
AGGGGTCAAAATATAATTTTGGAAAAGTTT
Found at i:30919556 original size:17 final size:18
Alignment explanation
Indices: 30919534--30919567 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
30919524 TGCTCCTTTT
30919534 TATTATTAAT-CTATTAC
1 TATTATTAATACTATTAC
30919551 TATTATTAATACTATTA
1 TATTATTAATACTATTA
30919568 ATACCAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTATTAATACTATTAC
Found at i:30920852 original size:85 final size:86
Alignment explanation
Indices: 30920705--30920863 Score: 230
Period size: 85 Copynumber: 1.9 Consensus size: 86
30920695 GAGTTGGTAT
* * * *
30920705 ACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTTGCTTCTCAGTATCTCA
1 ACTTCTCAGTATCTCATCAAGAAGATAACCACCTCACTTGTTTCAACTTGCTTCTCAGTATCTCA
30920770 TCAGGAAGACGAATTTGGCCC
66 TCAGGAAGACGAATTTGGCCC
* ** * *
30920791 ACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTA-TTGTTTCGACTTGCTTCTCAGTATCTCA
1 ACTTCTCAGTATCTCATCAAGAAGATAACCACCTCACTTGTTTCAACTTGCTTCTCAGTATCTCA
30920855 TCAGGAAGA
66 TCAGGAAGA
30920864 TGGGGTTCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
85 35 0.55
86 29 0.45
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (86 bp):
ACTTCTCAGTATCTCATCAAGAAGATAACCACCTCACTTGTTTCAACTTGCTTCTCAGTATCTCA
TCAGGAAGACGAATTTGGCCC
Found at i:30920870 original size:201 final size:201
Alignment explanation
Indices: 30920567--30921554 Score: 1390
Period size: 201 Copynumber: 4.9 Consensus size: 201
30920557 TCTTTTTCTT
* * *
30920567 TCATCAGGAAGACG-ATTTGGTTCACTTCTCCGTATCTCATCAGGAAGCTAACCACTTTATTGCT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCT
* * * * * *
30920631 TCGACCTGCTTCTCAGTGTCTCATCAGAAAGCTGGGGTTCAAAGATTTGCTCGCATTAAGCGTCG
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTAAGCCTTG
*
30920696 AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTTGCTTCTC
131 AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTC
30920761 AGTATC
196 AGTATC
* * *
30920767 TCATCAGGAAGACGAATTTGGCCCACTTCTCAGTATCTCATCAAGAAGCTAACCATTTTATTGTT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCT
* * * *
30920832 TCGACTTGCTTCTCAGTATCTCATCAGGAAGATGGGGTTCAAATATTTGCTCACATTGAGCGAGG
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATT-A---A-G
** * * * * * * * *
30920897 GTTTGATTTGGTCTTCTTCT-TAGTATCTCATCAGGAAGATGACCGCGTCATTTATTTCAATCCG
126 CCTTGAGTTGGTATACTTCTCT-GTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTCG
*
30920961 CTTCTCTGTATC
190 CTTCTCAGTATC
* * * *
30920973 TCACCAGGAAGACAAATTTGGTCCACTTCTCAGTATCTCATCAAGAAGCTAATCATTTTATTGCT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCT
* ** * *
30921038 TCGACCTGCTTCTCAGTATCTCATCAAGAAGCTGGGGTTCGAAGATTTGCTCGTATTAAGCATCG
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTAAGCCTTG
* *
30921103 AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCACTTGTTTCAATTCGGTTCTC
131 AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTC
30921168 AGTATC
196 AGTATC
* * *
30921174 TCATTAGGAAGACGAATTTGGTCCACTTCTCAGTGTCTCATCAGGAAGCTAACCATTTTATTGTT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCT
* * * * *
30921239 TCGACCTGCTTCTTAGTATCTCATCAGGAAGCTAGGGTTCGAAGATTTGCTCACTTTGAGCCTTT
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTAAGCCTTG
* *
30921304 AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACTGCCTCACTTGTTTCAATTCGCTTCTC
131 AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTC
30921369 TA-TATC
196 -AGTATC
*
30921375 TCA-CTAGGAAGGCGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGC
1 TCATC-AGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGC
* * * *
30921439 TTCGATCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACTTTGAGCCTT
65 TTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTAAGCCTT
30921504 GAGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGT
130 GAGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGT
30921555 GGATAATTGC
Statistics
Matches: 697, Mismatches: 81, Indels: 19
0.87 0.10 0.02
Matches are distributed among these distances:
200 14 0.02
201 504 0.72
202 4 0.01
205 3 0.00
206 172 0.25
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (201 bp):
TCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCT
TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACATTAAGCCTTG
AGTTGGTATACTTCTCTGTATCTCATCAAGAAGATGACCGCCTCACTTGTTTCAATTCGCTTCTC
AGTATC
Found at i:30921962 original size:48 final size:48
Alignment explanation
Indices: 30921902--30922192 Score: 277
Period size: 48 Copynumber: 6.0 Consensus size: 48
30921892 TCCCTTCAAA
* *
30921902 TCTTCGTGGTACTGGATCCGCCGTTGTGGCTTAGAGCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGATCTTTCCCTTGTG
30921950 TCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGATCTTTCCCTTGTG
1 TCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGATCTTTCCCTTGTG
* * * *
30921998 TCTTCGCGGTACTGGATCTGCCATCGTGGCTTAGATCTTTCCCTTGTA
1 TCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGATCTTTCCCTTGTG
* ** * * *
30922046 TCTTTGTGGTACTGGATCTACCGTTGCGGTCTTAGATCTTTCCCTTCTGTA
1 TCTTCGTGGTACTGGATCCGCCGTCGTGG-CTTAGATCTTTCCC-T-TGTG
* * * *
30922097 TCTTCGCT-GTACTAGATTCGCAGTTACGAT--CTTAGATCTTTCCCGTCGTG
1 TCTTCG-TGGTACTGGATCCGCCG-T-CG-TGGCTTAGATCTTTCCC-TTGTG
** * * *
30922147 T-TTTATGGTACTGGATCTAG-CATCGCGGCTTAGATCTTTCCCTTGT
1 TCTTCGTGGTACTGGATC-CGCCGTCGTGGCTTAGATCTTTCCCTTGT
30922193 CAAACCTGTA
Statistics
Matches: 200, Mismatches: 32, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
47 5 0.03
48 129 0.64
49 24 0.12
50 5 0.03
51 34 0.17
52 2 0.01
53 1 0.00
ACGTcount: A:0.12, C:0.25, G:0.24, T:0.39
Consensus pattern (48 bp):
TCTTCGTGGTACTGGATCCGCCGTCGTGGCTTAGATCTTTCCCTTGTG
Found at i:30924306 original size:9 final size:9
Alignment explanation
Indices: 30924275--30924306 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
30924265 TCATCTTGAC
30924275 TTTTTCTTT
1 TTTTTCTTT
*
30924284 CTTTTCTTT
1 TTTTTCTTT
30924293 TTTTTCTTT
1 TTTTTCTTT
30924302 TTTTT
1 TTTTT
30924307 TTGGGGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:30924307 original size:14 final size:14
Alignment explanation
Indices: 30924275--30924308 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
30924265 TCATCTTGAC
*
30924275 TTTTTCTTTCTTTT
1 TTTTTTTTTCTTTT
*
30924289 CTTTTTTTTCTTTT
1 TTTTTTTTTCTTTT
30924303 TTTTTT
1 TTTTTT
30924309 GGGGGTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTCTTTT
Found at i:30929433 original size:29 final size:29
Alignment explanation
Indices: 30929401--30929462 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 29
30929391 AAAATGAGAG
30929401 TTTTTGGACACTT-AGGGGCAAAATGGTAA
1 TTTTTGGAC-CTTCAGGGGCAAAATGGTAA
*
30929430 -TTTTGGACTTTCGAGGGGCAAAATGGTAA
1 TTTTTGGACCTTC-AGGGGCAAAATGGTAA
30929459 TTTT
1 TTTT
30929463 GGGAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 2 0.07
28 8 0.28
29 16 0.55
30 3 0.10
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.35
Consensus pattern (29 bp):
TTTTTGGACCTTCAGGGGCAAAATGGTAA
Found at i:30929605 original size:59 final size:58
Alignment explanation
Indices: 30929420--30929696 Score: 213
Period size: 58 Copynumber: 4.7 Consensus size: 58
30929410 ACTTAGGGGC
* * ** * * * *
30929420 AAAATGGTAA-TTTTGGACTTTCGAGGGGCAAAATGGTAATTTTGGGAAAATTTGGGGTTA
1 AAAATGG-AATTTTTGGA-TATC-AGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCA
* * * * * **
30929480 AAAAT-GAAATTTTAGATATTCAAGGGTAAAACGGTGA-TTTTAGAAAAATCGAAATCA
1 AAAATGGAATTTTTGGATA-TCAGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCA
* *
30929537 AAAAAGGAATTTTTGGATATTTAGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCA
1 AAAATGGAATTTTTGGATA-TCAGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCA
* * * * *** *
30929596 AAAATGGAATTTTTGGACATCCGAGGGTAAAAAGGTATTTTTTA-AAGTTTCGAGG-TTA
1 AAAATGGAATTTTTGGATATCAG-GGGTAAAATGGTAATTTTTAGAAAAATCG-GGATCA
*
30929654 AAAATGGAATTTTTGGATATCCGAGGGTAAAATGGTAATTTTT
1 AAAATGGAATTTTTGGATATCAG-GGGTAAAATGGTAATTTTT
30929697 GGAAGTTTTA
Statistics
Matches: 175, Mismatches: 36, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
57 16 0.09
58 90 0.51
59 64 0.37
60 5 0.03
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (58 bp):
AAAATGGAATTTTTGGATATCAGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCA
Found at i:30929627 original size:29 final size:29
Alignment explanation
Indices: 30929595--30929789 Score: 148
Period size: 29 Copynumber: 6.7 Consensus size: 29
30929585 AATCGGGATC
*
30929595 AAAAATGGAATTTTTGGACA-TCCGAGGGT
1 AAAAATGGAATTTTTGGA-AGTTCGAGGGT
* ** *
30929624 AAAAA-GGTATTTTTTAAAGTTTCGAGGTT
1 AAAAATGGAATTTTTGGAAG-TTCGAGGGT
*
30929653 AAAAATGGAATTTTTGGATA-TCCGAGGGT
1 AAAAATGGAATTTTTGGA-AGTTCGAGGGT
**
30929682 -AAAATGGTAATTTTTGGAAGTTTTAGGGT
1 AAAAATGG-AATTTTTGGAAGTTCGAGGGT
* * *
30929711 CAAAAGTGAAATTTTAGGAAGTTCGAGGGT
1 -AAAAATGGAATTTTTGGAAGTTCGAGGGT
* *
30929741 AAAAATGTAATTTTTGAAAAGTTC-AGTGGT
1 AAAAATGGAATTTTTG-GAAGTTCGAG-GGT
* **
30929771 TAAAATATAATTTTTGGAA
1 AAAAATGGAATTTTTGGAA
30929790 AAGTTTGGGG
Statistics
Matches: 131, Mismatches: 25, Indels: 20
0.74 0.14 0.11
Matches are distributed among these distances:
27 1 0.01
28 17 0.13
29 57 0.44
30 50 0.38
31 6 0.05
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.35
Consensus pattern (29 bp):
AAAAATGGAATTTTTGGAAGTTCGAGGGT
Found at i:30929714 original size:117 final size:119
Alignment explanation
Indices: 30929420--30929788 Score: 287
Period size: 117 Copynumber: 3.1 Consensus size: 119
30929410 ACTTAGGGGC
* * ** * * * *
30929420 AAAATGGTAA-TTTTGGACTTTCGAGGGGCAAAATGGTAATTTTGGGAAAATTTGGGGTTAAAAA
1 AAAATGG-AATTTTTGGA-TATCGAGGGGTAAAATGGTAATTTTTAGAAAAATAGGGATCAAAAA
* * * * * * ** *
30929484 TGAAATTTTA-GATA-TTCAAGGGTAAAACGGTGATTTTAGAAAA-ATC-GAAATCA
64 TGAAATTTTAGGA-AGTCCGAGGGTAAAAAGGTAATTTTTGAAAAGTTCAGAGGTTA
* ** *
30929537 AAAAAGGAATTTTTGGATATTTAGGGGTAAAATGGTAATTTTTAGAAAAATCGGGATCAAAAATG
1 AAAATGGAATTTTTGGATATCGAGGGGTAAAATGGTAATTTTTAGAAAAATAGGGATCAAAAATG
* * *
30929602 GAATTTTTGGACA-TCCGAGGGTAAAAAGGT-ATTTTT-TAAAGTTTC-GAGGTTA
66 AAATTTTAGGA-AGTCCGAGGGTAAAAAGGTAATTTTTGAAAAG-TTCAGAGGTTA
* *** *
30929654 AAAATGGAATTTTTGGATATCCGA-GGGTAAAATGGTAATTTTTGGAAGTTTTAGGG-TCAAAAG
1 AAAATGGAATTTTTGGATAT-CGAGGGGTAAAATGGTAATTTTTAGAA-AAATAGGGATCAAAAA
* * *
30929717 TGAAATTTTAGGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAAGTTCAGTGGTTA
64 TGAAATTTTAGGAAGTCCGAGGGTAAAAAGGTAATTTTTGAAAAGTTCAGAGGTTA
30929773 AAATAT--AATTTTTGGA
1 AAA-ATGGAATTTTTGGA
30929789 AAAGTTTGGG
Statistics
Matches: 203, Mismatches: 38, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
115 3 0.01
116 52 0.26
117 109 0.54
118 24 0.12
119 13 0.06
120 2 0.01
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (119 bp):
AAAATGGAATTTTTGGATATCGAGGGGTAAAATGGTAATTTTTAGAAAAATAGGGATCAAAAATG
AAATTTTAGGAAGTCCGAGGGTAAAAAGGTAATTTTTGAAAAGTTCAGAGGTTA
Found at i:30929763 original size:30 final size:30
Alignment explanation
Indices: 30929561--30929819 Score: 139
Period size: 30 Copynumber: 8.8 Consensus size: 30
30929551 GGATATTTAG
*
30929561 GGGT-AAAATGGTAATTTTTAGAAAA-ATCG-
1 GGGTAAAAAT-GTAATTTTT-GAAAAGTTCGA
* * * * *
30929590 GGATCAAAAATGGAATTTTTGGACA-TCCGA
1 GGGT-AAAAATGTAATTTTTGAAAAGTTCGA
* *
30929620 GGGTAAAAAGGT-ATTTTT-TAAAGTTTCGA
1 GGGTAAAAATGTAATTTTTGAAAAG-TTCGA
* * * * *
30929649 GGTTAAAAATGGAATTTTTGGATA-TCCGA
1 GGGTAAAAATGTAATTTTTGAAAAGTTCGA
* **
30929678 GGGT-AAAATGGTAATTTTTG-GAAGTTTTA
1 GGGTAAAAAT-GTAATTTTTGAAAAGTTCGA
* * * *
30929707 GGGTCAAAAGTGAAATTTTAG-GAAGTTCGA
1 GGGT-AAAAATGTAATTTTTGAAAAGTTCGA
30929737 GGGTAAAAATGTAATTTTTGAAAAGTTC-A
1 GGGTAAAAATGTAATTTTTGAAAAGTTCGA
* * *
30929766 GTGGTTAAAATATAATTTTTGGAAAAGTTTG-
1 G-GGTAAAAATGTAATTTTT-GAAAAGTTCGA
*
30929797 GGGTTAAAATGTAA-TTTTGAAAA
1 GGGTAAAAATGTAATTTTTGAAAA
30929820 AGTTTAAGGT
Statistics
Matches: 177, Mismatches: 38, Indels: 31
0.72 0.15 0.13
Matches are distributed among these distances:
27 2 0.01
28 17 0.10
29 68 0.38
30 70 0.40
31 20 0.11
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.34
Consensus pattern (30 bp):
GGGTAAAAATGTAATTTTTGAAAAGTTCGA
Found at i:30929783 original size:59 final size:58
Alignment explanation
Indices: 30929720--30929843 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 58
30929710 TCAAAAGTGA
*
30929720 AATTTTAGG-AAGTTCGAGGGTAAAAATGTAATTTTTG-AAAAGTTCAGTGGTTAAAATAT
1 AATTTTAGGAAAGTTCG-GGGTAAAAATGTAA-TTTTGAAAAAGTTCA-AGGTTAAAATAT
* * * *
30929779 AATTTTTGGAAAAGTTTGGGGTTAAAATGTAATTTTGAAAAAGTTTAAGGTTAAAATAT
1 AATTTTAGG-AAAGTTCGGGGTAAAAATGTAATTTTGAAAAAGTTCAAGGTTAAAATAT
*
30929838 GATTTT
1 AATTTT
30929844 TTGACAGTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
59 29 0.52
60 21 0.38
61 6 0.11
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.39
Consensus pattern (58 bp):
AATTTTAGGAAAGTTCGGGGTAAAAATGTAATTTTGAAAAAGTTCAAGGTTAAAATAT
Found at i:30929824 original size:29 final size:29
Alignment explanation
Indices: 30929737--30929844 Score: 110
Period size: 30 Copynumber: 3.7 Consensus size: 29
30929727 GGAAGTTCGA
* *
30929737 GGGTAAAAATGTAATTTTTGAAAAGTTCAG
1 GGGTTAAAATGTAATTTTTGAAAAGTT-TG
* *
30929767 TGGTTAAAATATAATTTTTGGAAAAGTTTG
1 GGGTTAAAATGTAATTTTT-GAAAAGTTTG
*
30929797 GGGTTAAAATGTAA-TTTTGAAAAAGTTTA
1 GGGTTAAAATGTAATTTTTG-AAAAGTTTG
* * *
30929826 AGGTTAAAATATGATTTTT
1 GGGTTAAAATGTAATTTTT
30929845 TGACAGTTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
28 1 0.02
29 23 0.35
30 33 0.51
31 8 0.12
ACGTcount: A:0.39, C:0.01, G:0.20, T:0.40
Consensus pattern (29 bp):
GGGTTAAAATGTAATTTTTGAAAAGTTTG
Found at i:30931649 original size:18 final size:17
Alignment explanation
Indices: 30931626--30931684 Score: 82
Period size: 18 Copynumber: 3.4 Consensus size: 17
30931616 ATAATAATTT
30931626 TTTAAATTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
30931644 TTTAAATTTAAAAATAAA
1 TTTAAATTT-AAAATAAA
* *
30931662 TCTAAATTTAAAACAAA
1 TTTAAATTTAAAATAAA
30931679 TTTAAA
1 TTTAAA
30931685 AGGGGTCCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:30933348 original size:7 final size:7
Alignment explanation
Indices: 30933333--30933363 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
30933323 ATAGGGACAT
30933333 ATGTATA
1 ATGTATA
*
30933340 ATATATA
1 ATGTATA
30933347 ATGTATA
1 ATGTATA
30933354 ATGTATA
1 ATGTATA
30933361 ATG
1 ATG
30933364 CTATTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (7 bp):
ATGTATA
Found at i:30934226 original size:5 final size:5
Alignment explanation
Indices: 30934212--30934245 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
30934202 TTGTAATTCA
*
30934212 AATTT TATTT AATTT AATTT AATTT AATTT AATT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATT
30934246 ACTAGAAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
AATTT
Found at i:30935581 original size:29 final size:29
Alignment explanation
Indices: 30935546--30935607 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
30935536 AAAAAATATA
*
30935546 TTTTTA-TAATCTT-TAT-ACTTTTAAAT
1 TTTTTATTATTCTTATATAACTTTTAAAT
* *
30935572 TTTTTATTATTTTTATATAATTTTTAAAT
1 TTTTTATTATTCTTATATAACTTTTAAAT
30935601 TTTTTAT
1 TTTTTAT
30935608 ATTTAAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 6 0.20
27 5 0.17
28 3 0.10
29 16 0.53
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTTATTATTCTTATATAACTTTTAAAT
Found at i:30937909 original size:14 final size:14
Alignment explanation
Indices: 30937890--30937928 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
30937880 TCAGAAAAAT
30937890 AAATCA-TTTTCTAA
1 AAATCATTTTTC-AA
30937904 AAATCATTTTTCAA
1 AAATCATTTTTCAA
30937918 AAATCATTTTT
1 AAATCATTTTT
30937929 AGTGAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 19 0.79
15 5 0.21
ACGTcount: A:0.41, C:0.13, G:0.00, T:0.46
Consensus pattern (14 bp):
AAATCATTTTTCAA
Found at i:30939376 original size:21 final size:21
Alignment explanation
Indices: 30939332--30939377 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
30939322 CTATGACTTT
* *
30939332 TTTTGAATACTTTTTGTGATG
1 TTTTGAATACTTTTTGTCACG
30939353 TTTTGAGAT-CTTTTTGTCACG
1 TTTTGA-ATACTTTTTGTCACG
30939374 TTTT
1 TTTT
30939378 TCATAGCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.15, C:0.09, G:0.17, T:0.59
Consensus pattern (21 bp):
TTTTGAATACTTTTTGTCACG
Found at i:30939552 original size:20 final size:20
Alignment explanation
Indices: 30939529--30939574 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
30939519 GATAAGCCCT
*
30939529 TTGACCGTTAGATTTAATGG
1 TTGACCGTTAGATTTAACGG
*
30939549 TTGACCGTTGGATTTAACGG
1 TTGACCGTTAGATTTAACGG
30939569 TTGACC
1 TTGACC
30939575 ATCAAGTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (20 bp):
TTGACCGTTAGATTTAACGG
Found at i:30948205 original size:52 final size:52
Alignment explanation
Indices: 30948125--30948262 Score: 217
Period size: 52 Copynumber: 2.7 Consensus size: 52
30948115 TAAATCAAAA
* **
30948125 AGGTCTGATGACTA-GTGTCATTGTGAGTATATAAATCCTTTACGGATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACAAATTATG
30948176 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACAAATTATG
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACAAATTATG
* *
30948228 AGGTCCGATGACTATGTGTCAACGTGAGTAT-TAAA
1 AGGTCTGATGACTATGTGTCATCGTGAGTATATAAA
30948263 GGAAATGAAT
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
51 18 0.22
52 63 0.78
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (52 bp):
AGGTCTGATGACTATGTGTCATCGTGAGTATATAAATCCTTTACAAATTATG
Found at i:30948706 original size:23 final size:23
Alignment explanation
Indices: 30948680--30948723 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
30948670 TCCAATCAGT
30948680 AGCTTCTAGAAGGTCTAGTCAAC
1 AGCTTCTAGAAGGTCTAGTCAAC
30948703 AGCTTCTAGAAGGTCTAGTCA
1 AGCTTCTAGAAGGTCTAGTCA
30948724 GCAAGGATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (23 bp):
AGCTTCTAGAAGGTCTAGTCAAC
Found at i:30950632 original size:59 final size:59
Alignment explanation
Indices: 30950537--30950708 Score: 186
Period size: 59 Copynumber: 2.9 Consensus size: 59
30950527 TTAGATGTTC
* * * *** *
30950537 GAGGATAAAACGGTAATTTATAGAAAATTTGGGATCAAAAATGGAATATTTT-GAAATCCG
1 GAGG-TAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAATAGAAT-TTTTGGAAATCCG
* * **
30950597 GAGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAGAATTTTTGGATATTTG
1 GAGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAATAGAATTTTTGGAAATCCG
* *
30950656 G-GGTAAAAATGGTAATTTTTAGAAAAGTCAAGATCAAAAATAGGATTTTTGGA
1 GAGGT-AAAATGGTAATTTTTAGAAAAATCAAGATCAAAAATAGAATTTTTGGA
30950709 CATTTGGGGG
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
58 7 0.07
59 85 0.89
60 4 0.04
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (59 bp):
GAGGTAAAATGGTAATTTTTAGAAAAATCAAGATCAAAAATAGAATTTTTGGAAATCCG
Found at i:30950714 original size:59 final size:59
Alignment explanation
Indices: 30950602--30950717 Score: 196
Period size: 59 Copynumber: 2.0 Consensus size: 59
30950592 ATCCGGAGGT
*
30950602 AAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAGAATTTTTGGATATTTGGGGTA
1 AAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAGAATTTTTGGACATTTGGGGTA
* * *
30950661 AAAATGGTAATTTTTAGAAAAGTCAAGATCAAAAATAGGATTTTTGGACATTTGGGG
1 AAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAGAATTTTTGGACATTTGGGG
30950718 GGTAAAATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (59 bp):
AAAATGGTAATTTTTAGAAAAATCAAGATCAAAAACAGAATTTTTGGACATTTGGGGTA
Found at i:30950762 original size:64 final size:62
Alignment explanation
Indices: 30950689--30950809 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 62
30950679 AAAGTCAAGA
* * *
30950689 TCAAAAATAGGATTTTTGGACATTTGGGGGGTAAAATAAAACATAA-TTTTGAGAAGTTTCGAGG
1 TCAAAAATAGAATTTTTGGA-AGTTCGGGGGTAAAA-AAAACATAATTTTTG-GAAGTTTCGAGG
**
30950753 TCAAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAATGTAATTTTTGGAAGTTT
1 TCAAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAACATAATTTTTGGAAGTTT
30950810 TGGGGGTAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
62 14 0.27
63 18 0.35
64 19 0.37
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.33
Consensus pattern (62 bp):
TCAAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAACATAATTTTTGGAAGTTTCGAGG
Found at i:30950790 original size:31 final size:31
Alignment explanation
Indices: 30950691--30950871 Score: 129
Period size: 30 Copynumber: 5.7 Consensus size: 31
30950681 AGTCAAGATC
*
30950691 AAAAATAGGATTTTTGGACA-TTTGGGGGGTAA
1 AAAAATAGAATTTTTGGA-AGTTT-GGGGGTAA
* * * * *
30950723 AATAAA-ACATAATTTTGAGAAGTTTCGAGGT-C
1 AA-AAATAGA-ATTTTTG-GAAGTTTGGGGGTAA
*
30950755 AAAAATAGAATTTTTGGAAGTTCGGGGGTAA
1 AAAAATAGAATTTTTGGAAGTTTGGGGGTAA
30950786 AAAAA-ATGTAATTTTTGGAAGTTTTGGGGGTAA
1 AAAAATA-G-AATTTTTGGAAG-TTTGGGGGTAA
* * * ** *
30950819 AAAAACATAATTTTGGGAAGTTTTAGGGT-T
1 AAAAATAGAATTTTTGGAAGTTTGGGGGTAA
*
30950849 AAAAATGGAATTTTTGGAAGTTT
1 AAAAATAGAATTTTTGGAAGTTT
30950872 TAGGGCAAAA
Statistics
Matches: 117, Mismatches: 22, Indels: 22
0.73 0.14 0.14
Matches are distributed among these distances:
30 30 0.26
31 22 0.19
32 30 0.26
33 29 0.25
34 6 0.05
ACGTcount: A:0.38, C:0.03, G:0.25, T:0.34
Consensus pattern (31 bp):
AAAAATAGAATTTTTGGAAGTTTGGGGGTAA
Found at i:30950823 original size:64 final size:63
Alignment explanation
Indices: 30950691--30950872 Score: 156
Period size: 64 Copynumber: 2.9 Consensus size: 63
30950681 AGTCAAGATC
* * * **
30950691 AAAAATAGGATTTTTGGACATTTGGGGGGTAAAATAAAACATAA-TTTTGAGAAG-TTTCGAGGT
1 AAAAATAGAATTTTTGGA-AGTTCGGGGGTAAAA-AAAATGTAATTTTTG-GAAGTTTTCGAGGT
*
30950754 C
63 A
* *
30950755 AAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAATGTAATTTTTGGAAGTTTTGGGGGTAA
1 AAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAATGTAATTTTTGGAAGTTTTCGAGGT-A
* * * *** * *
30950819 AAAAACATAATTTTGGGAAGTTTTAGGGT--TAAAAATGGAATTTTTGGAAGTTTT
1 AAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAATGTAATTTTTGGAAGTTTT
30950873 AGGGCAAAAT
Statistics
Matches: 99, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
62 34 0.34
63 25 0.25
64 40 0.40
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.34
Consensus pattern (63 bp):
AAAAATAGAATTTTTGGAAGTTCGGGGGTAAAAAAAATGTAATTTTTGGAAGTTTTCGAGGTA
Found at i:30950871 original size:30 final size:31
Alignment explanation
Indices: 30950755--30950898 Score: 136
Period size: 32 Copynumber: 4.7 Consensus size: 31
30950745 TTTCGAGGTC
***
30950755 AAAAATAG-AATTTTTGGAAGTTCGGGGGTAAA
1 AAAAAT-GTAATTTTTGGAAGTTTTAGGGT-AA
*
30950787 AAAAATGTAATTTTTGGAAGTTTTGGGGGTAA
1 AAAAATGTAATTTTTGGAAGTTTT-AGGGTAA
** * *
30950819 AAAAACATAATTTTGGGAAGTTTTAGGGT-T
1 AAAAATGTAATTTTTGGAAGTTTTAGGGTAA
*
30950849 AAAAATGGAATTTTTGGAAGTTTTAGGG---
1 AAAAATGTAATTTTTGGAAGTTTTAGGGTAA
*
30950877 CAAAATGTAATTTTTGGAAGTT
1 AAAAATGTAATTTTTGGAAGTT
30950899 CAGAGGCAAA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
28 20 0.21
30 24 0.25
31 5 0.05
32 43 0.44
33 5 0.05
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (31 bp):
AAAAATGTAATTTTTGGAAGTTTTAGGGTAA
Found at i:30950890 original size:28 final size:29
Alignment explanation
Indices: 30950787--30950919 Score: 135
Period size: 30 Copynumber: 4.5 Consensus size: 29
30950777 CGGGGGTAAA
*
30950787 AAAAATGTAATTTTTGGAAGTTTTGGGGGT
1 AAAAATGTAATTTTTGGAAGTTTT-AGGGT
** *
30950817 AAAAAAACATAATTTTGGGAAGTTTTAGGGTT
1 --AAAAATGTAATTTTTGGAAGTTTTAGGG-T
*
30950849 AAAAATGGAATTTTTGGAAGTTTTAGGG-
1 AAAAATGTAATTTTTGGAAGTTTTAGGGT
* * *
30950877 CAAAATGTAATTTTTGGAAG-TTCAGAGGC
1 AAAAATGTAATTTTTGGAAGTTTTAG-GGT
30950906 AAAAATGTAATTTT
1 AAAAATGTAATTTT
30950920 GAAGAAGTTC
Statistics
Matches: 86, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
27 4 0.05
28 20 0.23
29 13 0.15
30 24 0.28
31 3 0.03
32 22 0.26
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.36
Consensus pattern (29 bp):
AAAAATGTAATTTTTGGAAGTTTTAGGGT
Found at i:30950929 original size:30 final size:30
Alignment explanation
Indices: 30950735--30950958 Score: 124
Period size: 30 Copynumber: 7.4 Consensus size: 30
30950725 TAAAACATAA
30950735 TTTTGAGAAGTTTC-GAGGTCAAAAATAG-AAT
1 TTTTG-GAAG-TTCAGAGGTCAAAAAT-GTAAT
* * *
30950766 TTTTGGAAGTTCGGGGGTAAAAAAAATGTAAT
1 TTTTGGAAGTTCAGAGGT--CAAAAATGTAAT
** * * **
30950798 TTTTGGAAGTTTTGGGGGTAAAAAAACATAAT
1 TTTTGGAAG-TTCAGAGGT-CAAAAATGTAAT
* * * *
30950830 TTTGGGAAGTTTTAG-GGTTAAAAATGGAAT
1 TTTTGGAAG-TTCAGAGGTCAAAAATGTAAT
*
30950860 TTTTGGAAGTTTTAG-GG-C-AAAATGTAAT
1 TTTTGGAAG-TTCAGAGGTCAAAAATGTAAT
30950888 TTTTGGAAGTTCAGAGG-CAAAAATGTAA-
1 TTTTGGAAGTTCAGAGGTCAAAAATGTAAT
* **
30950916 TTTTGAAGAAGTTCAGGGGTC-AAAATACAAT
1 TTTTG--GAAGTTCAGAGGTCAAAAATGTAAT
30950947 TTTTGGATAGTT
1 TTTTGGA-AGTT
30950959 TAGGGACTTT
Statistics
Matches: 163, Mismatches: 18, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
27 4 0.02
28 26 0.16
29 14 0.09
30 54 0.33
31 15 0.09
32 42 0.26
33 8 0.05
ACGTcount: A:0.36, C:0.04, G:0.25, T:0.34
Consensus pattern (30 bp):
TTTTGGAAGTTCAGAGGTCAAAAATGTAAT
Found at i:30952167 original size:21 final size:21
Alignment explanation
Indices: 30952141--30952181 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
30952131 TTAATGTTTT
*
30952141 TTAAAATATTAATTATTATTA
1 TTAAAACATTAATTATTATTA
*
30952162 TTAAAACATTTATTATTATT
1 TTAAAACATTAATTATTATT
30952182 GATGCCGATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TTAAAACATTAATTATTATTA
Found at i:30952982 original size:17 final size:17
Alignment explanation
Indices: 30952921--30952982 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 17
30952911 TTTTCATTTC
*
30952921 AAAATAAATTTAAACTC
1 AAAATAAATTTAAACTT
* * * *
30952938 CAAACAAGTTTTAAATTT
1 AAAATAA-ATTTAAACTT
*
30952956 ACAATAAATTTAAACTT
1 AAAATAAATTTAAACTT
*
30952973 AAAATGAATT
1 AAAATAAATT
30952983 AAAAATCTAA
Statistics
Matches: 32, Mismatches: 12, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
17 21 0.66
18 11 0.34
ACGTcount: A:0.53, C:0.10, G:0.03, T:0.34
Consensus pattern (17 bp):
AAAATAAATTTAAACTT
Done.