Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 110 of 163
Found at i:31078105 original size:29 final size:30
Alignment explanation
Indices: 31078051--31078111 Score: 106
Period size: 29 Copynumber: 2.0 Consensus size: 30
31078041 TTTTATTTTC
31078051 TTTTATTTTCTTTTTTTTTGGTAAAATCTCT
1 TTTTATTTTC-TTTTTTTTGGTAAAATCTCT
31078082 TTTTATTTTC-TTTTTTTGGTAAAATCTCT
1 TTTTATTTTCTTTTTTTTGGTAAAATCTCT
31078111 T
1 T
31078112 CTTCACCGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 20 0.67
31 10 0.33
ACGTcount: A:0.16, C:0.10, G:0.07, T:0.67
Consensus pattern (30 bp):
TTTTATTTTCTTTTTTTTGGTAAAATCTCT
Found at i:31082879 original size:3 final size:3
Alignment explanation
Indices: 31082793--31082860 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
31082783 CAAAACATAG
* * *
31082793 ATA ATA A-A ATA AAA ATA AT- ATA TTA ATTA ATA ATA A-A GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA
*
31082836 ACA TATA A-A ATA ATA ATA ATA ATA A
1 ATA -ATA ATA ATA ATA ATA ATA ATA A
31082861 CGATGGTAAC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
2 7 0.14
3 39 0.76
4 5 0.10
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:31083041 original size:15 final size:16
Alignment explanation
Indices: 31083020--31083058 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
31083010 GTATAAAAGT
31083020 AAAATAAAATAAAC-A
1 AAAATAAAATAAACTA
*
31083035 TAAAT-AAATAAACTA
1 AAAATAAAATAAACTA
31083050 AAAATAAAA
1 AAAATAAAA
31083059 GACTTCATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 8 0.40
15 9 0.45
16 3 0.15
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAACTA
Found at i:31083045 original size:19 final size:19
Alignment explanation
Indices: 31083021--31083057 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
31083011 TATAAAAGTA
*
31083021 AAATAAAATAAACATAAAT
1 AAATAAAATAAAAATAAAT
*
31083040 AAATAAACTAAAAATAAA
1 AAATAAAATAAAAATAAA
31083058 AGACTTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (19 bp):
AAATAAAATAAAAATAAAT
Found at i:31087287 original size:18 final size:18
Alignment explanation
Indices: 31087264--31087299 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
31087254 AAAAGCAGAC
31087264 TCAATCAACACATGAAGA
1 TCAATCAACACATGAAGA
31087282 TCAATCAACACATGAAGA
1 TCAATCAACACATGAAGA
31087300 CCAACATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.22, G:0.11, T:0.17
Consensus pattern (18 bp):
TCAATCAACACATGAAGA
Found at i:31094075 original size:3 final size:3
Alignment explanation
Indices: 31094067--31094092 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
31094057 TCGTCTTCCT
31094067 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
31094093 TAATTGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:31094535 original size:17 final size:18
Alignment explanation
Indices: 31094498--31094556 Score: 77
Period size: 17 Copynumber: 3.4 Consensus size: 18
31094488 ATTTGGTTTC
* *
31094498 AAATTTATTTCTAAGTTT
1 AAATTTAATTCTAAATTT
31094516 AAATTTAATT-TAAATTT
1 AAATTTAATTCTAAATTT
*
31094533 AAATTT-GTTCTAAATTT
1 AAATTTAATTCTAAATTT
31094550 AAATTTA
1 AAATTTA
31094557 GCTTAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
16 2 0.06
17 25 0.69
18 9 0.25
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
AAATTTAATTCTAAATTT
Found at i:31094563 original size:17 final size:17
Alignment explanation
Indices: 31094498--31094564 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
31094488 ATTTGGTTTC
* *
31094498 AAATTTATTTCTAAGTTT
1 AAATTTAGTT-TAAATTT
*
31094516 AAATTTAATTTAAATTT
1 AAATTTAGTTTAAATTT
31094533 AAATTT-GTTCTAAATTT
1 AAATTTAGTT-TAAATTT
*
31094550 AAATTTAGCTTAAAT
1 AAATTTAGTTTAAAT
31094565 ATGAAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
16 2 0.05
17 30 0.70
18 11 0.26
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (17 bp):
AAATTTAGTTTAAATTT
Found at i:31094725 original size:19 final size:20
Alignment explanation
Indices: 31094687--31094725 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
31094677 GACTTAAACA
* *
31094687 CTAATGGACCTAAGACTAGC
1 CTAATGGACCCAACACTAGC
31094707 CTAATGG-CCCAACACTAGC
1 CTAATGGACCCAACACTAGC
31094726 TCCCACTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (20 bp):
CTAATGGACCCAACACTAGC
Found at i:31096693 original size:29 final size:30
Alignment explanation
Indices: 31096610--31096702 Score: 113
Period size: 29 Copynumber: 3.2 Consensus size: 30
31096600 CAAAAATGAT
* *
31096610 ATTTGTGATCCCAAAACTTCAAAAAATTA-C
1 ATTT-TGACCCCAAAACTTCTAAAAATTACC
31096640 ATTTTGACCCCAAAACTTCTAAAAATTACC
1 ATTTTGACCCCAAAACTTCTAAAAATTACC
*
31096670 ATTTT-ACCCCTAAACTTTCT-AAAATT-CC
1 ATTTTGACCCCAAAAC-TTCTAAAAATTACC
31096698 ATTTT
1 ATTTT
31096703 TAACCTTGAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
28 7 0.12
29 37 0.64
30 14 0.24
ACGTcount: A:0.38, C:0.24, G:0.03, T:0.35
Consensus pattern (30 bp):
ATTTTGACCCCAAAACTTCTAAAAATTACC
Found at i:31096737 original size:59 final size:58
Alignment explanation
Indices: 31096660--31096857 Score: 270
Period size: 59 Copynumber: 3.4 Consensus size: 58
31096650 CAAAACTTCT
*
31096660 AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCTTGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTC-AAAATTCCATTTTTAACCTTGATTTCACC
* * * * *
31096719 TAAAATTACCATTTTACCCCCGAACCTTTCGAAATTCCATTTTTAACCCTGATTCCACC
1 AAAAATTACCATTTTACCCCC-AAACTTTCAAAATTCCATTTTTAACCTTGATTTCACC
* * * * *
31096778 AAAAATTACCATTTTATCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGATTTTACC
1 AAAAATTACCATTTTACCCCCAAACTTT-CAAAATTCCATTTTTAACCTTGATTTCACC
31096837 AAAAATTACCATTTTACCCCC
1 AAAAATTACCATTTTACCCCC
31096858 GGGTGTCTAA
Statistics
Matches: 120, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
58 6 0.05
59 107 0.89
60 7 0.06
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.36
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCCCAAACTTTCAAAATTCCATTTTTAACCTTGATTTCACC
Found at i:31096793 original size:30 final size:29
Alignment explanation
Indices: 31096690--31096792 Score: 75
Period size: 30 Copynumber: 3.4 Consensus size: 29
31096680 TAAACTTTCT
* *
31096690 AAAATTCCATTTTTAACCTTGATTTCACC
1 AAAATTCCATTTTTAACCCTGATTCCACC
* * * **
31096719 TAAAATTACCA-TTTTACCCCCGA-ACCTTTC
1 -AAAATT-CCATTTTTAACCCTGATTCC-ACC
*
31096749 GAAATTCCATTTTTAACCCTGATTCCACC
1 AAAATTCCATTTTTAACCCTGATTCCACC
31096778 AAAAATTACCATTTT
1 -AAAATT-CCATTTT
31096793 ATCCCCAAAC
Statistics
Matches: 53, Mismatches: 14, Indels: 11
0.68 0.18 0.14
Matches are distributed among these distances:
28 3 0.06
29 17 0.32
30 23 0.43
31 10 0.19
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.37
Consensus pattern (29 bp):
AAAATTCCATTTTTAACCCTGATTCCACC
Found at i:31098235 original size:29 final size:30
Alignment explanation
Indices: 31098202--31098266 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
31098192 TAATTAATAT
* *
31098202 TTATTGTCATTT-TTACTATGATTATATTG
1 TTATTGTCATTTAATACTATAATTATATTG
* *
31098231 TTATT-TTATTTAATACTATAATTATATTT
1 TTATTGTCATTTAATACTATAATTATATTG
31098260 TTATTGT
1 TTATTGT
31098267 GTTATTAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 5 0.17
29 24 0.80
30 1 0.03
ACGTcount: A:0.28, C:0.05, G:0.06, T:0.62
Consensus pattern (30 bp):
TTATTGTCATTTAATACTATAATTATATTG
Found at i:31101826 original size:15 final size:13
Alignment explanation
Indices: 31101802--31101840 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 13
31101792 TGCATATGCA
31101802 TACATGCATTCAT
1 TACATGCATTCAT
31101815 TAGCATTGCATTTCAT
1 TA-CA-TGCA-TTCAT
31101831 TACATGCATT
1 TACATGCATT
31101841 AAATTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.17
14 6 0.26
15 6 0.26
16 7 0.30
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (13 bp):
TACATGCATTCAT
Found at i:31103814 original size:49 final size:49
Alignment explanation
Indices: 31103732--31104247 Score: 228
Period size: 49 Copynumber: 10.6 Consensus size: 49
31103722 CATAGAGCTT
31103732 GAAGA-GGAATAGATTGAAGTCGCAAC-GTCAGATCTAACACCCTAAAATC
1 GAAGAGGGAA-AGATTGAAGTCGCAACGGT-AGATCTAACACCCTAAAATC
* * * * *
31103781 AAAGAGGGAAAGATTGAAGCCGTAACGGTAGATCTTACACCTTAAAA-C
1 GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* * * * * * * * *
31103829 TAAAGAGGGATAGGTTAAAG-CTGTAATGGTAGACCTAACATCC-AAAAAC
1 -GAAGAGGGAAAGATTGAAGTC-GCAACGGTAGATCTAACACCCTAAAATC
* ** * * *** * * *
31103878 TGAAAAAAGAAAGATTAAAGTCGCAATGACGGATATTACA-CCTTAAATC
1 -GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* * * * * * * * *
31103927 GAAGAGGGATAGGTTGAAGTAGCGATGATGGA-CTTAAAACCCTAAATTC
1 GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATC-TAACACCCTAAAATC
* * * * ** ** *
31103976 GAAGAGGGATAGATTAAAGCCGTAATAGCGGATCTAACACCTTAAAATC
1 GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* * *
31104025 GAAGAGGGAAAGATTGAAGCCGCAACGGTAGATCTTACACCTTAAAA-C
1 GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* * * * * * *
31104073 TGAAGAGGGATAGTTTGAAGCCGCAATGGCAGACCTAACA-CC-AAATTACC
1 -GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAA--ATC
* * * * *
31104123 GAAAGAGGGAAAGATTGAAGTCACAACGATTGATCTTACACCTTAAAA-C
1 G-AAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* * *** * * * *
31104172 TGAAGAGGGATAGGTTGAAGTTATAAAGGTGGA-CCAACAGCCTAAAATC
1 -GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
* *
31104221 GAAGAGGAAAAGATTGAAGTCGTAACG
1 GAAGAGGGAAAGATTGAAGTCGCAACG
31104248 ACGGATCTTA
Statistics
Matches: 351, Mismatches: 97, Indels: 39
0.72 0.20 0.08
Matches are distributed among these distances:
47 3 0.01
48 67 0.19
49 238 0.68
50 39 0.11
51 1 0.00
52 3 0.01
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.20
Consensus pattern (49 bp):
GAAGAGGGAAAGATTGAAGTCGCAACGGTAGATCTAACACCCTAAAATC
Found at i:31104314 original size:245 final size:244
Alignment explanation
Indices: 31103762--31104317 Score: 555
Period size: 245 Copynumber: 2.3 Consensus size: 244
31103752 CGCAACGTCA
* * ** * * *
31103762 GATCTAACACCCTAAAATC-AAAGAGGGAAAGATTGAAGCCGTAACGGTAGATCTTACACCTTAA
1 GATCTAACACCTTAAAATCGAAA-AGGCAAAGATTGAAGCCACAACGATAGACCTAACACCTTAA
* * * *
31103826 AACTAAAGAGGGATAGGTTAAAGCTGTAATGGTAGACCTAACATCCAAAAACTGAAAAAAGAAAG
65 AACTAAAGAGGGATAGGTTAAAGCCGCAATGGCAGACCTAACATCCAAAAACCGAAAAAAGAAAG
* * * * *
31103891 ATTAAAGTCGCAATGACGGATATTACACCTTAAATCGAAGAGGGATAGGTTGAAGTAGCGATGAT
130 ATTAAAGTCACAACGACGGATATTACACCTTAAAACGAAGAGGGATAGGTTGAAGTAGCAAAGAT
* * * * *
31103956 GGACTTAAAACCCTAAATTCGAAGAGGGATAGATTAAAGCCGTAATAGCG
195 GGACTCAAAACCCTAAAATCGAAGAGGAAAAGATTAAAGCCGTAAGAGCG
* * * * * *
31104006 GATCTAACACCTTAAAATCGAAGAGGGAAAGATTGAAGCCGCAACGGTAGATCTTACACCTTAAA
1 GATCTAACACCTTAAAATCGAAAAGGCAAAGATTGAAGCCACAACGATAGACCTAACACCTTAAA
* * * * **
31104071 ACTGAAGAGGGATAGTTTGAAGCCGCAATGGCAGACCTAACA-CCAAATTACCGAAAGAGGGAAA
66 ACTAAAGAGGGATAGGTTAAAGCCGCAATGGCAGACCTAACATCCAAA-AACCGAAA-AAAGAAA
* ** * *
31104135 GATTGAAGTCACAACGATTGATCTTACACCTTAAAACTGAAGAGGGATAGGTTGAAGTTA-TAAA
129 GATTAAAGTCACAACGACGGATATTACACCTTAAAAC-GAAGAGGGATAGGTTGAAG-TAGCAAA
* * * * *
31104199 GGTGGAC-CAACAGCCTAAAATCGAAGAGGAAAAGATTGAAGTCGTAACGA-CG
192 GATGGACTCAAAACCCTAAAATCGAAGAGGAAAAGATTAAAGCCGTAA-GAGCG
* * * * * * * * *
31104251 GATCTTACATCTTAAAATTGAAAAGGCATAGGTTGAAGTCACGATGATAGACCTAATACCTTAAA
1 GATCTAACACCTTAAAATCGAAAAGGCAAAGATTGAAGCCACAACGATAGACCTAACACCTTAAA
31104316 AC
66 AC
31104318 CAAAAAGAGA
Statistics
Matches: 258, Mismatches: 48, Indels: 11
0.81 0.15 0.03
Matches are distributed among these distances:
243 5 0.02
244 101 0.39
245 123 0.48
246 27 0.10
247 2 0.01
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (244 bp):
GATCTAACACCTTAAAATCGAAAAGGCAAAGATTGAAGCCACAACGATAGACCTAACACCTTAAA
ACTAAAGAGGGATAGGTTAAAGCCGCAATGGCAGACCTAACATCCAAAAACCGAAAAAAGAAAGA
TTAAAGTCACAACGACGGATATTACACCTTAAAACGAAGAGGGATAGGTTGAAGTAGCAAAGATG
GACTCAAAACCCTAAAATCGAAGAGGAAAAGATTAAAGCCGTAAGAGCG
Found at i:31104356 original size:343 final size:344
Alignment explanation
Indices: 31103781--31104411 Score: 772
Period size: 343 Copynumber: 1.8 Consensus size: 344
31103771 CCCTAAAATC
** *
31103781 AAAGAGGGAAAGATTGAAGCCGTAACGGTAGATCTTACACCTTAAAACTAAAGAGGGATAGGTTA
1 AAAGAGGGAAAGATTGAAGCCACAACGATAGATCTTACACCTTAAAACTAAAGAGGGATAGGTTA
* * * *
31103846 AAGCTGTAATGGTAGACCTAACATCCAAAAACTGAAAAAAGAAAGATTAAAGTCGCAATGACGGA
66 AAGCTATAAAGGTAGACCTAACAGCCAAAAACTGAAAAAAGAAAGATTAAAGTCGCAACGACGGA
* * * * **
31103911 TATTACACCTTAAATCGAAGAGGGATAGGTTGAAGTAGCGATGATGGACTTAAAACCCTAAATTC
131 TATTACACCTTAAATCGAAAAGGCATAGGTTGAAGTAGCGATGATAGACCTAAAACCCTAAAACC
* * * * * *
31103976 GAAGAGGGATAGATTAAAGCCGTAATAGCGGATCTAACACCTTAAAATCGAAGAGGGAA-AGATT
196 AAAAAGAGATAGATTAAAGCCGTAAGAGAGGATCTAACACCTTAAAATCAAAGAGGGAACAGATT
* ** *
31104040 GAAGCCGCAACGGTAGATCTTACACCTTAAAACTGAAGAGGGATAGTTTGAAGCCGCAATGGCAG
261 AAAGCCGCAACGACAAATCTTACACCTTAAAACTGAAGAGGGATAGTTTGAAGCCGCAATGGCAG
31104105 ACCTAACACCAAATTACCG
326 ACCTAACACCAAATTACCG
* * * *
31104124 AAAGAGGGAAAGATTGAAGTCACAACGATTGATCTTACACCTTAAAACTGAAGAGGGATAGGTTG
1 AAAGAGGGAAAGATTGAAGCCACAACGATAGATCTTACACCTTAAAACTAAAGAGGGATAGGTTA
* * * * * * *
31104189 AAGTTATAAAGGTGGACC-AACAGCCTAAAA-TCG-AAGAGGAAAAGATTGAAGTCGTAACGACG
66 AAGCTATAAAGGTAGACCTAACAGCCAAAAACT-GAAAAAAG-AAAGATTAAAGTCGCAACGACG
* * * * *
31104251 GATCTTACATCTTAAAATTGAAAAGGCATAGGTTGAAGTCA-CGATGATAGACCTAATACCTTAA
129 GATATTACACCTT-AAATCGAAAAGGCATAGGTTGAAGT-AGCGATGATAGACCTAAAACCCTAA
* *
31104315 AACCAAAAAGAGATAGATTGAAGCCACG-AAGA-AGGATCTAACACCTTAAAATCAAATAGGGAA
192 AACCAAAAAGAGATAGATTAAAG-C-CGTAAGAGAGGATCTAACACCTTAAAATCAAAGAGGGAA
* *
31104378 CAGATTAAAGCTGCAATGACAAATCTTACACCTT
255 CAGATTAAAGCCGCAACGACAAATCTTACACCTT
31104412 CGGAAAAAAA
Statistics
Matches: 238, Mismatches: 43, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
341 5 0.02
342 41 0.17
343 158 0.66
344 32 0.13
345 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (344 bp):
AAAGAGGGAAAGATTGAAGCCACAACGATAGATCTTACACCTTAAAACTAAAGAGGGATAGGTTA
AAGCTATAAAGGTAGACCTAACAGCCAAAAACTGAAAAAAGAAAGATTAAAGTCGCAACGACGGA
TATTACACCTTAAATCGAAAAGGCATAGGTTGAAGTAGCGATGATAGACCTAAAACCCTAAAACC
AAAAAGAGATAGATTAAAGCCGTAAGAGAGGATCTAACACCTTAAAATCAAAGAGGGAACAGATT
AAAGCCGCAACGACAAATCTTACACCTTAAAACTGAAGAGGGATAGTTTGAAGCCGCAATGGCAG
ACCTAACACCAAATTACCG
Found at i:31106657 original size:15 final size:14
Alignment explanation
Indices: 31106639--31106670 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
31106629 TATATTGAAA
31106639 TTTTCTATATATTTT
1 TTTTCTATAT-TTTT
31106654 TTTTCTATATTTTT
1 TTTTCTATATTTTT
31106668 TTT
1 TTT
31106671 ATTTCAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTCTATATTTTT
Found at i:31106662 original size:13 final size:13
Alignment explanation
Indices: 31106646--31106670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31106636 AAATTTTCTA
31106646 TATATTTTTTTTC
1 TATATTTTTTTTC
31106659 TATATTTTTTTT
1 TATATTTTTTTT
31106671 ATTTCAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TATATTTTTTTTC
Found at i:31106798 original size:18 final size:18
Alignment explanation
Indices: 31106776--31106825 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
31106766 TTTCTAGAAT
31106776 ATTTTTAAATTTTTCTG-
1 ATTTTTAAATTTTTCTGA
**
31106793 ATTTTTAAAAATTT-TGA
1 ATTTTTAAATTTTTCTGA
*
31106810 TATTTTTGAATTTTTC
1 -ATTTTTAAATTTTTC
31106826 ATTTATTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
16 2 0.08
17 12 0.48
18 11 0.44
ACGTcount: A:0.28, C:0.04, G:0.06, T:0.62
Consensus pattern (18 bp):
ATTTTTAAATTTTTCTGA
Found at i:31107721 original size:41 final size:41
Alignment explanation
Indices: 31107675--31107755 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
31107665 AACAATACAT
* *
31107675 AGGAAAAAATCTAGC-TAGATTTCATATGTCATTATCAATTC
1 AGGAAAAAATCCA-CTTAGATTTCATATATCATTATCAATTC
*
31107716 AGGAAAGAATCCACTTAGATTTCATATATCATTATCAATT
1 AGGAAAAAATCCACTTAGATTTCATATATCATTATCAATT
31107756 TGAATTAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 35 0.97
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (41 bp):
AGGAAAAAATCCACTTAGATTTCATATATCATTATCAATTC
Found at i:31116016 original size:29 final size:29
Alignment explanation
Indices: 31115984--31116046 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
31115974 AAAATGAGAC
* *
31115984 TTTTTGAATACTCGAGGGTAAAATGGTAA
1 TTTTGGAATACTCGAGGGAAAAATGGTAA
* *
31116013 TTTTGGACTTCTCGAGGGAAAAATGGTAA
1 TTTTGGAATACTCGAGGGAAAAATGGTAA
31116042 TTTTG
1 TTTTG
31116047 CGAAAGTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (29 bp):
TTTTGGAATACTCGAGGGAAAAATGGTAA
Found at i:31116181 original size:59 final size:59
Alignment explanation
Indices: 31116003--31116340 Score: 235
Period size: 59 Copynumber: 5.7 Consensus size: 59
31115993 ACTCGAGGGT
* * * * * * *
31116003 AAAATGGTAATTTTGGACTTCTCGAGGGAAAAATGGTAATTTTGCGAAAGTTTTG-GGTTA
1 AAAATGGCATTTTTGGACATC-CGAGGGTAAAATGGTAATTTT-TGAAAGTTTCGAGGTCA
* * * ** **
31116063 AAAATGACA-TTTTAGACATCTGAGACTAAAATGGTAATTTTTAGAAA-AATC-AGGATCA
1 AAAATGGCATTTTTGGACATCCGAGGGTAAAATGGTAATTTTT-GAAAGTTTCGAGG-TCA
*
31116121 AAAACT-CCATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGGTCA
1 AAAA-TGGCATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGGTCA
* ** * * * * * * *
31116180 AAATTGGGGTTTTTAGACATTCGGGGGTGAAATGGTAATTTTTGACAGTTTCAAGGTAA
1 AAAATGGCATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGGTCA
* * * * *
31116239 AAAATGG-AGTTTTTGGACCTCCAAGGGCAAAATGATAATTTTTGAAAGTTT-TAGGGTCA
1 AAAATGGCA-TTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGAAAGTTTCGA-GGTCA
** *
31116298 AAAATGTAATTTTTGGA-AGTTCGAGGGTAAAAAT-GTAATTTTT
1 AAAATGGCATTTTTGGACA-TCCGAGGGT-AAAATGGTAATTTTT
31116341 AAAAATTTTG
Statistics
Matches: 215, Mismatches: 50, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
57 3 0.01
58 35 0.16
59 161 0.75
60 16 0.07
ACGTcount: A:0.35, C:0.09, G:0.23, T:0.34
Consensus pattern (59 bp):
AAAATGGCATTTTTGGACATCCGAGGGTAAAATGGTAATTTTTGAAAGTTTCGAGGTCA
Found at i:31116183 original size:30 final size:30
Alignment explanation
Indices: 31116149--31116340 Score: 80
Period size: 29 Copynumber: 6.5 Consensus size: 30
31116139 ATCCGAGGGT
31116149 AAAATGGTAATTTTTGAAAGTTTCGAGGTC
1 AAAATGGTAATTTTTGAAAGTTTCGAGGTC
** * *
31116179 AAAATTGG-GGTTTTTAGACA--TTCGGGGGT-
1 AAAA-TGGTAATTTTT-GAAAGTTTC-GAGGTC
* * * *
31116208 GAAATGGTAATTTTTGACAGTTTCAAGGTAA
1 AAAATGGTAATTTTTGAAAGTTTCGAGGT-C
* * ** * * *
31116239 AAAATGG-AGTTTTTG-GACCTCCAAGGGC
1 AAAATGGTAATTTTTGAAAGTTTCGAGGTC
* *
31116267 AAAATGATAATTTTTGAAAGTTT-TAGGGTC
1 AAAATGGTAATTTTTGAAAGTTTCGA-GGTC
* *
31116297 AAAAAT-GTAATTTTTGGAAG-TTCGAGGGTA
1 -AAAATGGTAATTTTTGAAAGTTTCGA-GGTC
31116327 AAAAT-GTAATTTTT
1 AAAATGGTAATTTTT
31116341 AAAAATTTTG
Statistics
Matches: 120, Mismatches: 29, Indels: 27
0.68 0.16 0.15
Matches are distributed among these distances:
28 13 0.11
29 45 0.38
30 45 0.38
31 17 0.14
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (30 bp):
AAAATGGTAATTTTTGAAAGTTTCGAGGTC
Found at i:31116294 original size:29 final size:29
Alignment explanation
Indices: 31116262--31116349 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
31116252 TGGACCTCCA
31116262 AGGG-CAAAATGATAATTTTTGAAAGTTTT
1 AGGGTCAAAATG-TAATTTTTGAAAGTTTT
* **
31116291 AGGGTCAAAAATGTAATTTTTGGAAGTTCG
1 AGGGTC-AAAATGTAATTTTTGAAAGTTTT
* * *
31116321 AGGGTAAAAATGTAATTTTTAAAAATTTT
1 AGGGTCAAAATGTAATTTTTGAAAGTTTT
31116350 GAGGACCTCC
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
29 22 0.46
30 20 0.42
31 6 0.12
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (29 bp):
AGGGTCAAAATGTAATTTTTGAAAGTTTT
Found at i:31118249 original size:11 final size:11
Alignment explanation
Indices: 31118235--31118293 Score: 57
Period size: 11 Copynumber: 5.2 Consensus size: 11
31118225 TGGACTTTTT
*
31118235 AATTAATTTTA
1 AATTAAATTTA
*
31118246 AATTTAAATTCA
1 AA-TTAAATTTA
31118258 AATTAAATTTA
1 AATTAAATTTA
31118269 AACTT-AATTTA
1 AA-TTAAATTTA
*
31118280 AATTTAAACTTA
1 AA-TTAAATTTA
31118292 AA
1 AA
31118294 AGAAAAGTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
11 22 0.55
12 18 0.45
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:31118255 original size:17 final size:17
Alignment explanation
Indices: 31118237--31118292 Score: 78
Period size: 17 Copynumber: 3.2 Consensus size: 17
31118227 GACTTTTTAA
31118237 TTAATTTTAAATTTAAA-
1 TTAA-TTTAAATTTAAAC
*
31118254 TTCAAATTAAATTTAAAC
1 TT-AATTTAAATTTAAAC
31118272 TTAATTTAAATTTAAAC
1 TTAATTTAAATTTAAAC
31118289 TTAA
1 TTAA
31118293 AAGAAAAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 31 0.89
18 4 0.11
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
TTAATTTAAATTTAAAC
Found at i:31118286 original size:23 final size:23
Alignment explanation
Indices: 31118235--31118293 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
31118225 TGGACTTTTT
* *
31118235 AATTAATTTTAAATTTAAATTCA
1 AATTAAATTTAAACTTAAATTCA
*
31118258 AATTAAATTTAAACTT-AATTTA
1 AATTAAATTTAAACTTAAATTCA
*
31118280 AATTTAAACTTAAA
1 AA-TTAAATTTAAA
31118294 AGAAAAGTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 7 0.23
23 24 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (23 bp):
AATTAAATTTAAACTTAAATTCA
Found at i:31118292 original size:12 final size:12
Alignment explanation
Indices: 31118237--31118312 Score: 57
Period size: 12 Copynumber: 6.4 Consensus size: 12
31118227 GACTTTTTAA
* *
31118237 TTAATTTTAAAT
1 TTAAATTTAAAC
*
31118249 TTAAATTCAAA-
1 TTAAATTTAAAC
31118260 TTAAATTTAAAC
1 TTAAATTTAAAC
*
31118272 TT-AATTTAAAT
1 TTAAATTTAAAC
* *
31118283 TTAAACTTAAAA
1 TTAAATTTAAAC
**
31118295 GAAAAGTTTAAAC
1 TTAAA-TTTAAAC
31118308 TTAAA
1 TTAAA
31118313 CCAAATTAAA
Statistics
Matches: 49, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
11 20 0.41
12 21 0.43
13 8 0.16
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (12 bp):
TTAAATTTAAAC
Found at i:31118313 original size:6 final size:6
Alignment explanation
Indices: 31118237--31118293 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
31118227 GACTTTTTAA
* * *
31118237 TTAATT TTAAAT TTAAAT TCAAA- TTAAAT TTAAAC TT-AAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
31118283 TTAAAC TTAAA
1 TTAAAT TTAAA
31118294 AGAAAAGTTT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
5 8 0.19
6 35 0.81
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (6 bp):
TTAAAT
Found at i:31118354 original size:15 final size:15
Alignment explanation
Indices: 31118334--31118363 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31118324 TTCAATCATG
*
31118334 AATTAAAATTTAAAA
1 AATTAAAAGTTAAAA
31118349 AATTAAAAGTTAAAA
1 AATTAAAAGTTAAAA
31118364 TTGGATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (15 bp):
AATTAAAAGTTAAAA
Found at i:31130318 original size:201 final size:199
Alignment explanation
Indices: 31129973--31130617 Score: 864
Period size: 201 Copynumber: 3.3 Consensus size: 199
31129963 GAATAGTTCG
* *
31129973 ACAAGCGAGGCGGTCATCTTCTTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGG
1 ACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGA
*
31130038 GCAAATCTTCGAACCCAGCTTCCAGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTA
66 GCAAATCTTCGAA-CCAGCTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTA
* * * *
31130103 GCTTCCTAATGAGACACAGAGAAGTAGACCAAATTTGTCTTCCTGAGGAGATCCGGAGAAGCGAA
130 GCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAA
31130168 TTAAA
195 TTAAA
*
31130173 ACAAGCGAGGCGATCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAAACACG
1 ACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTC-AACACG
*
31130238 AGCAAATCTTCGGACTCAGCTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTT
65 AGCAAATCTTCGAAC-CAGCTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTT
* *
31130303 AGCTTCCTGATGAGACACAAAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCCAGAGAAGCGA
129 AGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGA
31130368 A-T---
194 ATTAAA
* ** * *
31130370 ------GATGCGGTTGTCTTCCAGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACGCGA
1 ACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGA
* * * *
31130429 GCAAATCTTCGAACCTAGCTTCCTGATGA-AGTACTGAGAAGCAGGTCGAAGCAATAAAAAAGCT
66 GCAAATCTTCGAACC-AGCTTCCTGATGAGA-CACTGAGAAGCAAGTCGAAGCAATAAAAAGGTT
* *
31130493 AGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCTAGAGAAGCAA
129 AGCTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGA
31130558 ATTAAA
194 ATTAAA
* ** * * * * * *
31130564 AAAAATGATTGCGGTCATCCT-CTCGATGAGACACAGGGAAGAAGACCAAGTCAA
1 ACAAGCGA-GGCGGTCATCTTCCT-GATGAGATACAGAGAAGAATACCAACTCAA
31130618 GAAAATCAGA
Statistics
Matches: 395, Mismatches: 34, Indels: 31
0.86 0.07 0.07
Matches are distributed among these distances:
189 2 0.01
190 123 0.31
191 48 0.12
200 61 0.15
201 161 0.41
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (199 bp):
ACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGA
GCAAATCTTCGAACCAGCTTCCTGATGAGACACTGAGAAGCAAGTCGAAGCAATAAAAAGGTTAG
CTTCCTGATGAGACACAGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAAT
TAAA
Found at i:31130950 original size:28 final size:29
Alignment explanation
Indices: 31130919--31130979 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 29
31130909 AACTTGGATT
* *
31130919 TTTAATTTAAGTTTGAA-TTAATTTTAAA
1 TTTAATTTAAATTTAAATTTAATTTTAAA
**
31130947 TTT-ATTTAAATTTAAATTTTGTTTTAAA
1 TTTAATTTAAATTTAAATTTAATTTTAAA
31130975 TTTAA
1 TTTAA
31130980 ATACATTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 11 0.41
28 15 0.56
29 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (29 bp):
TTTAATTTAAATTTAAATTTAATTTTAAA
Found at i:31131878 original size:12 final size:13
Alignment explanation
Indices: 31131863--31131893 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
31131853 AATAATAAGT
31131863 ATAATATTAA-TA
1 ATAATATTAATTA
31131875 ATAATATTAATTA
1 ATAATATTAATTA
31131888 ATAATA
1 ATAATA
31131894 AAAAAGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATAATATTAATTA
Found at i:31133056 original size:59 final size:59
Alignment explanation
Indices: 31132959--31133252 Score: 436
Period size: 58 Copynumber: 5.0 Consensus size: 59
31132949 TTGATTCCCG
*
31132959 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCGTTTTACCCCCA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCA
* * * *
31133018 AACTTTCTAAAATTCCATTTTTAACCTCGATTTTACC-AAAATTACCATTTTACCCCCA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCA
* *
31133076 AACTTTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAGATTACCATTTTACCCCCA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCA
* *
31133135 AACTTTCCAAAATTCCATTTTTAA-CCCTATTTCACCAAAAAGTATA-C-TTTGACCCCCA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAA-T-TACCATTTTACCCCCA
* *
31133193 AACTTTCCAAAATTCCAATTTTAACCCCGATTTCACC-AAAATTACCATTTTACCCCCA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCA
31133251 AA
1 AA
31133253 AGTCAAAAAT
Statistics
Matches: 211, Mismatches: 18, Indels: 13
0.87 0.07 0.05
Matches are distributed among these distances:
56 2 0.01
57 2 0.01
58 116 0.55
59 89 0.42
60 2 0.01
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.33
Consensus pattern (59 bp):
AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCA
Found at i:31133190 original size:117 final size:116
Alignment explanation
Indices: 31132959--31133252 Score: 450
Period size: 117 Copynumber: 2.5 Consensus size: 116
31132949 TTGATTCCCG
*
31132959 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAAATTACCGTTTTACCCCCAAACTTT
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACC-AAAATTACCATTTTACCCCCAAACTTT
* * *
31133024 CTAAAATTCCATTTTTAACCTCGATTTTACCAAAATTACCATTTTACCCCCA
65 CCAAAATTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTGACCCCCA
*
31133076 AACTTTCCAAAATTCTATTTTTAACCCCAATTTCACCAAAGATTACCATTTTACCCCCAAACTTT
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAA-ATTACCATTTTACCCCCAAACTTT
*
31133141 CCAAAATTCCATTTTTAACC-CTATTTCACCAAAAAGTATA-C-TTTGACCCCCA
65 CCAAAATTCCATTTTTAACCTCGATTTCACC-AAAA-T-TACCATTTGACCCCCA
* *
31133193 AACTTTCCAAAATTCCAATTTTAACCCCGATTTCACCAAAATTACCATTTTACCCCCAAA
1 AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAA
31133253 AGTCAAAAAT
Statistics
Matches: 164, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
116 31 0.19
117 129 0.79
118 2 0.01
119 2 0.01
ACGTcount: A:0.34, C:0.30, G:0.02, T:0.33
Consensus pattern (116 bp):
AACTTTCCAAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACTTTC
CAAAATTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTGACCCCCA
Found at i:31137598 original size:20 final size:21
Alignment explanation
Indices: 31137554--31137599 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
31137544 AATGAGTTAA
31137554 TTTGGTTTAGTGGTTAAGTGT
1 TTTGGTTTAGTGGTTAAGTGT
*
31137575 TTTGG-TTATGTGTTTAAG-GT
1 TTTGGTTTA-GTGGTTAAGTGT
31137595 TTTGG
1 TTTGG
31137600 GTTTGAATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.13, C:0.00, G:0.33, T:0.54
Consensus pattern (21 bp):
TTTGGTTTAGTGGTTAAGTGT
Found at i:31143593 original size:18 final size:19
Alignment explanation
Indices: 31143559--31143595 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
31143549 AATAAAAAAA
*
31143559 ATAAAAATATTTTTAAATT
1 ATAAAAATATTTCTAAATT
31143578 ATAAAAAT-TTTCTAAATT
1 ATAAAAATATTTCTAAATT
31143596 TAATATTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
ATAAAAATATTTCTAAATT
Found at i:31148061 original size:147 final size:146
Alignment explanation
Indices: 31147794--31148226 Score: 742
Period size: 147 Copynumber: 2.9 Consensus size: 146
31147784 AGAAGGTATT
* *
31147794 GATCCAGAAAGTTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAAA
1 GATCCGGAAAGGTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAAA
* *
31147859 TGGAGGGATCAAACTATTGAAATTGTTATCCGATAAATCCAATTCCACGAGGTTACTGAGATTTG
66 TGGAGGGATCAAACCATTGAAATTGTTATCC-ATAAATTCAATTCCACGAGGTTACTGAGATTTG
31147924 CGATTGATGGTGGAATG
130 CGATTGATGGTGGAATG
31147941 GATCCGGAAAGGTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAAA
1 GATCCGGAAAGGTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAAA
*
31148006 TGGAGGGATCAAACCATTGAAATTGTTATCCACTAAATTCAATTCCACGAGGTTACTGAGAGTTG
66 TGGAGGGATCAAACCATTGAAATTGTTATCCA-TAAATTCAATTCCACGAGGTTACTGAGATTTG
31148071 CGATTGATGGTGGAATG
130 CGATTGATGGTGGAATG
** *
31148088 GATCCGGAAAGGTGGTTAAATGACAAAT-ACAGATATGCAAGATTTGGAACTCCAGATCTATGAA
1 GATCCGGAAAGGTGGTTCCATGACAAATCA-AGATATTCAAGATTTGGAACTCCAGATCTATGAA
*
31148152 ATGGAGGGATCAAACCATTGAAATTGTTATTCATTAAATTCAATTCCACGAGGTTACTGAGATTT
65 ATGGAGGGATCAAACCATTGAAATTGTTATCCA-TAAATTCAATTCCACGAGGTTACTGAGATTT
31148217 GCGATTGATG
129 GCGATTGATG
31148227 AACAAAGTGG
Statistics
Matches: 273, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
146 2 0.01
147 271 0.99
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (146 bp):
GATCCGGAAAGGTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAAA
TGGAGGGATCAAACCATTGAAATTGTTATCCATAAATTCAATTCCACGAGGTTACTGAGATTTGC
GATTGATGGTGGAATG
Found at i:31151413 original size:24 final size:25
Alignment explanation
Indices: 31151366--31151413 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
31151356 AAAATATACA
31151366 ATTTTGTATAATTTTTAAATAAATT
1 ATTTTGTATAATTTTTAAATAAATT
*
31151391 ATTTT-TATATTTATTTAAA-AAAT
1 ATTTTGTATAATT-TTTAAATAAAT
31151414 CATGTCCAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
ATTTTGTATAATTTTTAAATAAATT
Found at i:31153455 original size:34 final size:34
Alignment explanation
Indices: 31153412--31153479 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
31153402 TACAAGCTTA
31153412 ACGGGATAGGTGATGTGGCAGTTAACTAGCTAAT
1 ACGGGATAGGTGATGTGGCAGTTAACTAGCTAAT
31153446 ACGGGATAGGTGATGTGGCAGTTAACTAGCTAAT
1 ACGGGATAGGTGATGTGGCAGTTAACTAGCTAAT
31153480 GTAGCCAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.26
Consensus pattern (34 bp):
ACGGGATAGGTGATGTGGCAGTTAACTAGCTAAT
Found at i:31153975 original size:123 final size:121
Alignment explanation
Indices: 31153520--31153981 Score: 513
Period size: 123 Copynumber: 3.8 Consensus size: 121
31153510 TTCATGTCAT
* * * *
31153520 CATTAAACAATAAAAAC-AAAGAGAGAAAGGGGGCTTTTTCACCATTTTTCTTCATCCCTCTCGA
1 CATTAAACAACAAAAACGAAAGAGAAAAAGAGGGCTTTTTCACCATTTTTCTTCATCCCTCTCGG
* * * * * * *
31153584 CTCCCTCACCACCACCATCGCCATTGGTCACCACCACAAGTCCCTTTCACATGCCAC
66 CTCCCTCACCACCACCCTCGCCGTTGGCCACCTCCACAAGT-CCTCTCATACGCCAC
* *
31153641 CATTAAA-AA-AAAAACAGAAAGAG-AAAAGAGGGCTTTTTCACCATTTTTTTTCATCCCTCTTG
1 CATTAAACAACAAAAAC-GAAAGAGAAAAAGAGGGCTTTTTCACCATTTTTCTTCATCCCTCTCG
* * * * *
31153703 TCTCTCTCACCACCACCCTCGTCGTTGGCCACCTCCACAAG-CCTCTCTCTCACACCAC
65 GCTCCCTCACCACCACCCTCGCCGTTGGCCACCTCCACAAGTCCTCTC-AT-ACGCCAC
* * * * *
31153761 CATTAAATACCAAAAATCGAAAGAGAAAAAGAGGGCTTTTTCACCCTTTTTCTTCATCCATCTGG
1 CATTAAACAACAAAAA-CGAAAGAGAAAAAGAGGGCTTTTTCACCATTTTTCTTCATCCCTCTCG
* * * * *
31153826 GTTCCCTCACTACCACCCTCGTCGTTGGCCACCTCCACATGTCCGTCTCATACGCCAA
65 GCTCCCTCACCACCACCCTCGCCGTTGGCCACCTCCACAAGTCC-TCTCATACGCCAC
* * *
31153884 CACTAAACAACAAAAACAGAAAGAGAAAAAGGGGGGC-TTTTCACCATTTTTCTTCATGCCTCTC
1 CATTAAACAACAAAAAC-GAAAGAGAAAAA-GAGGGCTTTTTCACCATTTTTCTTCATCCCTCTC
* *
31153948 GGCTCCCTCACCACCACCCTCACCGTTGGTCACC
64 GGCTCCCTCACCACCACCCTCGCCGTTGGCCACC
31153982 ACTACAAGCT
Statistics
Matches: 287, Mismatches: 42, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
118 5 0.02
119 6 0.02
120 83 0.29
121 14 0.05
122 13 0.05
123 154 0.54
124 8 0.03
125 4 0.01
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.25
Consensus pattern (121 bp):
CATTAAACAACAAAAACGAAAGAGAAAAAGAGGGCTTTTTCACCATTTTTCTTCATCCCTCTCGG
CTCCCTCACCACCACCCTCGCCGTTGGCCACCTCCACAAGTCCTCTCATACGCCAC
Found at i:31154677 original size:3 final size:3
Alignment explanation
Indices: 31154669--31154719 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
31154659 ACCATTTTTC
* **
31154669 TCT TCT TC- TCC TCT TCT TCT TCT TCT TCT TCT T-T T-T TGG TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
31154714 TCT TCT
1 TCT TCT
31154720 ACTGCTCAAC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 6 0.14
3 36 0.86
ACGTcount: A:0.00, C:0.31, G:0.04, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:31157989 original size:14 final size:14
Alignment explanation
Indices: 31157967--31158002 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
31157957 TGGCAAGGAG
*
31157967 TGATCTGGCAATGC
1 TGATGTGGCAATGC
31157981 TGATGTGGCAATGC
1 TGATGTGGCAATGC
*
31157995 TGACGTGG
1 TGATGTGG
31158003 TATGTTGACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.19, C:0.17, G:0.36, T:0.28
Consensus pattern (14 bp):
TGATGTGGCAATGC
Found at i:31158237 original size:17 final size:17
Alignment explanation
Indices: 31158177--31158237 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
31158167 TTTTTATTTC
31158177 AAAATAAATTT-AAATT
1 AAAATAAATTTAAAATT
* * *
31158193 CCAAATAAGTTTAAATTT
1 -AAAATAAATTTAAAATT
*
31158211 ATAATAAATTTAAAATT
1 AAAATAAATTTAAAATT
*
31158228 AAAATGAATT
1 AAAATAAATT
31158238 AAGATTTAAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
17 30 0.88
18 4 0.12
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (17 bp):
AAAATAAATTTAAAATT
Found at i:31158772 original size:39 final size:39
Alignment explanation
Indices: 31158729--31158947 Score: 272
Period size: 39 Copynumber: 5.7 Consensus size: 39
31158719 ATTGATAGTG
* *
31158729 ATCTGCCTCAGGCTTGAGGTAAAAGACCGAATGGTTGCA
1 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
31158768 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
1 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
31158807 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
1 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
* * * *
31158846 ATCTGCCTCAGGCTCGGGGTAAGAGACTCTG-AT-GATG--
1 ATCTGCCTCAGACTTGAGGTAAGAGAC-C-GAATGGTTGCA
31158883 ATCTGGCC-CAGACTTGAGGTAAGAGACCGAATGGCTT-CA
1 ATCT-GCCTCAGACTTGAGGTAAGAGACCGAATGG-TTGCA
* *
31158922 ATCTGCCCCA-AGCTTGGGGTAAGAGA
1 ATCTGCCTCAGA-CTTGAGGTAAGAGA
31158948 TTGGCTAATG
Statistics
Matches: 159, Mismatches: 11, Indels: 20
0.84 0.06 0.11
Matches are distributed among these distances:
35 1 0.01
36 3 0.02
37 21 0.13
38 8 0.05
39 122 0.77
40 3 0.02
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (39 bp):
ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCA
Found at i:31158811 original size:78 final size:76
Alignment explanation
Indices: 31158727--31158974 Score: 281
Period size: 78 Copynumber: 3.2 Consensus size: 76
31158717 TAATTGATAG
* * *
31158727 TGATCTGCCTCAGGCTTGAGGTAAAAGACCGAATGGTTGCAATCTGCCTCAGACTTGAGGTAAGA
1 TGATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCTCAGACTTGGGGTAAGA
*
31158792 GAC-C-GAATGGT
66 GACTCTG-AT-GA
* *
31158803 TGCAATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCTCAGGCTCGGGGTAA
1 TG--ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCTCAGACTTGGGGTAA
31158868 GAGACTCTGATGA
64 GAGACTCTGATGA
*
31158881 TGATCTGGCC-CAGACTTGAGGTAAGAGACCGAATGGCTT-CAATCTGCCCCA-AGCTTGGGGTA
1 TGATCT-GCCTCAGACTTGAGGTAAGAGACCGAATGG-TTGCAATCTGCCTCAGA-CTTGGGGTA
* * *
31158943 AGAGATTGGCTAATGG
63 AGAGACT--CTGATGA
*
31158959 TAATCTGCCTCAGACT
1 TGATCTGCCTCAGACT
31158975 CGGGGTAAAA
Statistics
Matches: 149, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
76 57 0.38
77 8 0.05
78 80 0.54
79 3 0.02
80 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (76 bp):
TGATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCTCAGACTTGGGGTAAGA
GACTCTGATGA
Found at i:31158964 original size:115 final size:114
Alignment explanation
Indices: 31158768--31158982 Score: 287
Period size: 115 Copynumber: 1.9 Consensus size: 114
31158758 AATGGTTGCA
*
31158768 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCTCAGACTTGAGGTAAGAGA
1 ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCCCAGACTTGAGGTAAGAGA
*
31158833 CCGAATGGTTGCAATCTGCCTCAGGCTCGGGGTAAGAGACTCTGATGATG
66 CCGAATGGTT-CAATCTGCCTCAGACTCGGGGTAAGAGACTCTGATGATG
*
31158883 ATCTGGCC-CAGACTTGAGGTAAGAGACCGAATGGCTT-CAATCTGCCCCA-AGCTTGGGGTAAG
1 ATCT-GCCTCAGACTTGAGGTAAGAGACCGAATGG-TTGCAATCTGCCCCAGA-CTTGAGGTAAG
* *
31158945 AGATTGGCTAATGG-T-AATCTGCCTCAGACTCGGGGTAA
63 AGA---CCGAATGGTTCAATCTGCCTCAGACTCGGGGTAA
31158983 AAGATCAAAA
Statistics
Matches: 89, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
114 1 0.01
115 76 0.85
116 5 0.06
117 1 0.01
118 6 0.07
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (114 bp):
ATCTGCCTCAGACTTGAGGTAAGAGACCGAATGGTTGCAATCTGCCCCAGACTTGAGGTAAGAGA
CCGAATGGTTCAATCTGCCTCAGACTCGGGGTAAGAGACTCTGATGATG
Found at i:31159291 original size:93 final size:92
Alignment explanation
Indices: 31159085--31159412 Score: 433
Period size: 92 Copynumber: 3.6 Consensus size: 92
31159075 ATTTGGTGTC
* * * * * ***** * *
31159085 GAAGCTTCATTTTGCTCTTACTGCAACTTTAGAGAGATAAAGACCTGTTTATTTGTTTTTAATCC
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTG-CTATCCAACTTTACTGC
* * * *
31159150 AACTTGAAGAAGATAAAAATTGACG-TT
65 AACTTCAAGAGGATAAGAATTGATGTTT
* *
31159177 GAAGCTTTATCTTGCTCTTACTACAACTTTAGAGAGATAAAAGACTTGCTATCCAACTTTACTGC
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGAT-AAAGACTTGCTATCCAACTTTACTGC
* *
31159242 AACTTCAAGAGGATAGGGATTGATGTTT
65 AACTTCAAGAGGATAAGAATTGATGTTT
*
31159270 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACATGCTATCCAACTTTACTGCA
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
31159335 ACTTCAAGAGGATAAGAATTGATGTTT
66 ACTTCAAGAGGATAAGAATTGATGTTT
*
31159362 GAAGCTTCATCTTGCTCTTACAACAACTTCAGAGAGATAAAGACTTGCTAT
1 GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTAT
31159413 TGTTTTTGAT
Statistics
Matches: 209, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
92 163 0.78
93 46 0.22
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Consensus pattern (92 bp):
GAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTGCA
ACTTCAAGAGGATAAGAATTGATGTTT
Found at i:31159562 original size:49 final size:49
Alignment explanation
Indices: 31159499--31159598 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 49
31159489 GTACCGGGTT
* * *
31159499 CGTCGTTGCAACTTAAACCTTTCCCTTCAAATCTTCGTGGTATTGGATC
1 CGTCGTCGCAACTTAAACCTTTCCCTTCAAATCTTCGCGGTACTGGATC
* * * * **
31159548 CGTCGTCGCGACTTAGATCTTTCCCTTTATGTCTTCGCGGTACTGGATC
1 CGTCGTCGCAACTTAAACCTTTCCCTTCAAATCTTCGCGGTACTGGATC
31159597 CG
1 CG
31159599 CCATTGCGGT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.36
Consensus pattern (49 bp):
CGTCGTCGCAACTTAAACCTTTCCCTTCAAATCTTCGCGGTACTGGATC
Found at i:31159714 original size:48 final size:47
Alignment explanation
Indices: 31159530--31159716 Score: 153
Period size: 48 Copynumber: 3.9 Consensus size: 47
31159520 TCCCTTCAAA
* * * *
31159530 TCTTCGTGGTATTGGATCCGTCGTCGCGACTTAGATCTTTCCCTTTATG
1 TCTTCGTGGTACTAGATCCGCCGTCGCGACTTAGATCTTTCCC--TGTG
* * * * * *
31159579 TCTTCGCGGTACTGGATCCGCCATTGCGGTCTTAGATGTTTCCC-GTCG
1 TCTTCGTGGTACTAGATCCGCCGTCGC-GACTTAGATCTTTCCCTGT-G
* * * * * *
31159627 T-GTCGTGGTACTAGATTCGTCGTTGCGGCTTATATCTTTCCCTGGTG
1 TCTTCGTGGTACTAGATCCGCCGTCGCGACTTAGATCTTTCCCT-GTG
* *
31159674 TCTTCGTGGTACTAGATCCGCCGTCACGACTTAGACCTTTCCC
1 TCTTCGTGGTACTAGATCCGCCGTCGCGACTTAGATCTTTCCC
31159717 CGTTGTGTTT
Statistics
Matches: 108, Mismatches: 25, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
46 13 0.12
47 22 0.20
48 37 0.34
49 22 0.20
50 14 0.13
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.36
Consensus pattern (47 bp):
TCTTCGTGGTACTAGATCCGCCGTCGCGACTTAGATCTTTCCCTGTG
Found at i:31159719 original size:95 final size:96
Alignment explanation
Indices: 31159533--31159716 Score: 210
Period size: 96 Copynumber: 1.9 Consensus size: 96
31159523 CTTCAAATCT
* * * *
31159533 TCGTGGTATTGGATCCGTCGTCGCGACTTAGATCTTTCCCTTTATGTCTTCGCGGTACTGGATCC
1 TCGTGGTACTAGATCCGTCGTCGCGACTTAGATCTTTCCCTTGATGTCTTCGCGGTACTAGATCC
** * **
31159598 GCCATTGCGGTCTTAGATGTTTCCCGTCGTG
66 GCCATCACGGACTTAGACCTTTCCCGTCGTG
* * * * * *
31159629 TCGTGGTACTAGATTCGTCGTTGCGGCTTATATCTTTCCC-TGGTGTCTTCGTGGTACTAGATCC
1 TCGTGGTACTAGATCCGTCGTCGCGACTTAGATCTTTCCCTTGATGTCTTCGCGGTACTAGATCC
*
31159693 GCCGTCAC-GACTTAGACCTTTCCC
66 GCCATCACGGACTTAGACCTTTCCC
31159717 CGTTGTGTTT
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
94 13 0.18
95 25 0.35
96 34 0.47
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.36
Consensus pattern (96 bp):
TCGTGGTACTAGATCCGTCGTCGCGACTTAGATCTTTCCCTTGATGTCTTCGCGGTACTAGATCC
GCCATCACGGACTTAGACCTTTCCCGTCGTG
Found at i:31159836 original size:50 final size:49
Alignment explanation
Indices: 31159782--31160036 Score: 151
Period size: 50 Copynumber: 5.1 Consensus size: 49
31159772 ATGTTTCTGA
* *
31159782 GGTACACGGTCCGCCATTGTGACTTAGACCTTTCCTTTTTGTTTTTTTGC
1 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTTTTTG-TTTTTTGC
* * * * * * ** * * *
31159832 GGTAC-TGGATCTGTCGTTACGGTCTTAGATCTTTCCCTTCATG-CTTCTGA
1 GGTACACGG-TCCGCCGTTGC-GACTTAGACCTTT-CCTTTTTGTTTTTTGC
* * * *
31159882 GGTACACGGTCCGCCGTAGCGGCTTAGACCTTTCCCTGTTGTGTTTTTGC
1 GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTTTTTGT-TTTTTGC
* * * * * * * *
31159932 GGTAC-TGGATCTGCCATTGCGGCCTTAGATCTTTCCCTTTCATG-TTTCTGA
1 GGTACACGG-TCCGCCGTTGC-GACTTAGACCTTT-CCTTT-TTGTTTTTTGC
*
31159983 GGTACACGGTCCGTCGTTGCGACTTAGACCTTTCCCTTTTTG-TTTTTGC
1 GGTACACGGTCCGCCGTTGCGACTTAGACCTTT-CCTTTTTGTTTTTTGC
31160032 GGTAC
1 GGTAC
31160037 TGGATCTGCC
Statistics
Matches: 148, Mismatches: 46, Indels: 23
0.68 0.21 0.11
Matches are distributed among these distances:
48 5 0.03
49 27 0.18
50 61 0.41
51 42 0.28
52 11 0.07
53 2 0.01
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.39
Consensus pattern (49 bp):
GGTACACGGTCCGCCGTTGCGACTTAGACCTTTCCTTTTTGTTTTTTGC
Found at i:31159910 original size:100 final size:101
Alignment explanation
Indices: 31159690--31160071 Score: 572
Period size: 100 Copynumber: 3.8 Consensus size: 101
31159680 TGGTACTAGA
* *
31159690 TCCGCCGTCA-CGACTTAGACCTTTCCCCGTTGTGTTTTTGCGGTACTGGATTTGCCATTGCGGT
1 TCCGCCGT-AGCGACTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGT
31159754 CTTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
65 CTTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
* * * * * * * * *
31159791 TCCGCCATTGTGACTTAGACCTTTCCTTTTTGTTTTTTTGCGGTACTGGATCTGTCGTTACGGTC
1 TCCGCCGTAGCGACTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGTC
*
31159856 TTAGATCTTTCCC-TTCATGCTTCTGAGGTACACGG
66 TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
* *
31159891 TCCGCCGTAGCGGCTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGCC
1 TCCGCCGTAGCGACTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGTC
31159956 TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
66 TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
* * * *
31159992 TCCGTCGTTGCGACTTAGACCTTTCCCT-TTTTGTTTTTGCGGTACTGGATCTGCCATTGCAGTC
1 TCCGCCGTAGCGACTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGTC
31160056 TTAGATCTTTCCCTTT
66 TTAGATCTTTCCCTTT
31160072 GTGTTTCATG
Statistics
Matches: 249, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
100 137 0.55
101 112 0.45
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (101 bp):
TCCGCCGTAGCGACTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGTC
TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGG
Found at i:31159916 original size:201 final size:200
Alignment explanation
Indices: 31159690--31160070 Score: 622
Period size: 201 Copynumber: 1.9 Consensus size: 200
31159680 TGGTACTAGA
* *
31159690 TCCGCCGTCACGACTTAGACCTTTCCCCGTTGTGTTTTTGCGGTACTGGATTTGCCATTGCGGTC
1 TCCGCCGTCACGACTTAGACCTTTCCCCGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGCC
*
31159755 TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGGTCCGCCATTGTGACTTAGACCTTT-CCTT
66 TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGGTCCGCCATTGCGACTTAGACCTTTCCCTT
* * *
31159819 TTTGTTTTTTTGCGGTACTGGATCTGTCGTTACGGTCTTAGATCTTTCCCTTCATGCTTCTGAGG
131 TTTG--TTTTTGCGGTACTGGATCTGCCATTACAGTCTTAGATCTTTCCCTTCATGCTTCTGAGG
31159884 TACACGG
194 TACACGG
* *
31159891 TCCGCCGT-AGCGGCTTAGACCTTTCCCTGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGC
1 TCCGCCGTCA-CGACTTAGACCTTTCCCCGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGC
* *
31159955 CTTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGGTCCGTCGTTGCGACTTAGACCTTTCCCT
65 CTTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGGTCCGCCATTGCGACTTAGACCTTTCCCT
*
31160020 TTTTGTTTTTGCGGTACTGGATCTGCCATTGCAGTCTTAGATCTTTCCCTT
130 TTTTGTTTTTGCGGTACTGGATCTGCCATTACAGTCTTAGATCTTTCCCTT
31160071 TGTGTTTCAT
Statistics
Matches: 167, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
200 43 0.26
201 116 0.69
202 8 0.05
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (200 bp):
TCCGCCGTCACGACTTAGACCTTTCCCCGTTGTGTTTTTGCGGTACTGGATCTGCCATTGCGGCC
TTAGATCTTTCCCTTTCATGTTTCTGAGGTACACGGTCCGCCATTGCGACTTAGACCTTTCCCTT
TTTGTTTTTGCGGTACTGGATCTGCCATTACAGTCTTAGATCTTTCCCTTCATGCTTCTGAGGTA
CACGG
Found at i:31161265 original size:26 final size:26
Alignment explanation
Indices: 31161221--31161274 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
31161211 ACCTCTCCTT
*
31161221 TTCTTTTTCTTTTTGTTTTAATTTTC
1 TTCTTTTTCTTTCTGTTTTAATTTTC
**
31161247 TTCTTTCTTCTTTCT-TTTTTCTTTTC
1 TTCTTT-TTCTTTCTGTTTTAATTTTC
31161273 TT
1 TT
31161275 TTGTTCATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.04, C:0.17, G:0.02, T:0.78
Consensus pattern (26 bp):
TTCTTTTTCTTTCTGTTTTAATTTTC
Found at i:31166276 original size:21 final size:21
Alignment explanation
Indices: 31166247--31166308 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
31166237 TTCAGGGTAA
*
31166247 ATAATTATTTATAATACAAAT
1 ATAAATATTTATAATACAAAT
***
31166268 ATAAATATTATATCAAT-CTGTT
1 ATAAATATT-TAT-AATACAAAT
31166290 A-AAATATTTATAATACAAA
1 ATAAATATTTATAATACAAA
31166309 GTTTGCTAGC
Statistics
Matches: 31, Mismatches: 7, Indels: 7
0.69 0.16 0.16
Matches are distributed among these distances:
19 3 0.10
20 4 0.13
21 15 0.48
22 6 0.19
23 3 0.10
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (21 bp):
ATAAATATTTATAATACAAAT
Found at i:31166415 original size:15 final size:14
Alignment explanation
Indices: 31166379--31166409 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
31166369 AACTTTTAAA
31166379 TTTAATTTTTATAC
1 TTTAATTTTTATAC
31166393 TTTAATTTTTATAC
1 TTTAATTTTTATAC
31166407 TTT
1 TTT
31166410 TTATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTAATTTTTATAC
Found at i:31167398 original size:19 final size:20
Alignment explanation
Indices: 31167355--31167400 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
31167345 CCCAAGCATC
* *
31167355 ACATTTTTCTTTATTCTACT
1 ACATTCTTCTTTATTCCACT
*
31167375 ACATTCTTCTTTTTTCCA-T
1 ACATTCTTCTTTATTCCACT
31167394 ACATTCT
1 ACATTCT
31167401 CTAAAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.57
Consensus pattern (20 bp):
ACATTCTTCTTTATTCCACT
Found at i:31174031 original size:29 final size:30
Alignment explanation
Indices: 31173999--31174135 Score: 95
Period size: 30 Copynumber: 4.6 Consensus size: 30
31173989 GAGAAGTTCA
*
31173999 AGGGTTAAAATGCAATTTTG-GGAAGTATG
1 AGGGTTAAAATGCAATTTTGAGAAAGTATG
* ** *
31174028 AGGGTCAAAATGTGATTTTGAGAAAGTTTG
1 AGGGTTAAAATGCAATTTTGAGAAAGTATG
* * *
31174058 AGGGTTAAATAT--AATTTTTAGAAAAT-TT
1 AGGGTTAAA-ATGCAATTTTGAGAAAGTATG
* * *
31174086 AGGAGTTAAAATGTAATTTTG-GAAAAGTTTA
1 AGG-GTTAAAATGCAATTTTGAG-AAAGTATG
**
31174117 AGGGTTGGAATGCAATTTT
1 AGGGTTAAAATGCAATTTT
31174136 TGAATAAAAT
Statistics
Matches: 85, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
28 6 0.07
29 35 0.41
30 38 0.45
31 6 0.07
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.36
Consensus pattern (30 bp):
AGGGTTAAAATGCAATTTTGAGAAAGTATG
Found at i:31174062 original size:30 final size:29
Alignment explanation
Indices: 31173912--31174121 Score: 144
Period size: 30 Copynumber: 7.1 Consensus size: 29
31173902 GAGAATTTGG
* * * *
31173912 GGGTTAAAATATGGTTTTGGGAAAGTTTA
1 GGGTCAAAATGTGATTTTGAGAAAGTTTA
31173941 GGGGTCAAAATGTGATTTT-AGGAAAGTTTA
1 -GGGTCAAAATGTGATTTTGA-GAAAGTTTA
*
31173971 GGGGTCAAAATGTGA-TTTGAG-AAGTTCAA
1 -GGGTCAAAATGTGATTTTGAGAAAGTT-TA
* ** * *
31174000 GGGTTAAAATGCAATTTTG-GGAAGTATGA
1 GGGTCAAAATGTGATTTTGAGAAAGT-TTA
31174029 GGGTCAAAATGTGATTTTGAGAAAGTTTGA
1 GGGTCAAAATGTGATTTTGAGAAAGTTT-A
* * * * *
31174059 GGGT-TAAATATAATTTTTAGAAAATTTA
1 GGGTCAAAATGTGATTTTGAGAAAGTTTA
* *
31174087 GGAGTTAAAATGTAATTTTG-GAAAAGTTTAA
1 GG-GTCAAAATGTGATTTTGAG-AAAGTTT-A
31174118 GGGT
1 GGGT
31174122 TGGAATGCAA
Statistics
Matches: 145, Mismatches: 23, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
28 20 0.14
29 52 0.36
30 70 0.48
31 3 0.02
ACGTcount: A:0.35, C:0.02, G:0.28, T:0.34
Consensus pattern (29 bp):
GGGTCAAAATGTGATTTTGAGAAAGTTTA
Found at i:31180304 original size:222 final size:222
Alignment explanation
Indices: 31179918--31180380 Score: 743
Period size: 222 Copynumber: 2.1 Consensus size: 222
31179908 TGCAAACTTT
* *
31179918 TCTTCCACAACCAATTTGGTACTACCCCGCTTATTTGGTTATTTGAAAGTTCAAGATCTTCTAAG
1 TCTTCCACAACCAATTTGGTACTACCCCGCTTATTTGGTTATTTGAAAGGTCAAGATCATCTAAG
* * *
31179983 CTCTCTTGACTCTTTAGAAATGCTGGAAACGTACTTATATTACAGGATCCCAACCACAAACTTCT
66 CTCTCTTGACTCTTTAAAAATGCTGGAAACGTACTTATATTACAGGATCCCAACAACAAACTACT
*
31180048 CAACATTGGAAAGGAGGAATTTGCATCATCAAAAGGACACTGATTTGGAATATCAATCGCATTGG
131 CAACATTGGAAAGGAGGAATTTGCATCATCAAAAGGAAACTGATTTGGAATATCAATCGCATTGG
* * *
31180113 AAGATAG-GTCTACATATCTAAGAGTGC
196 AAGAAAGAAT-TACACATCTAAGAGTGC
* * *
31180140 TCTTCCACAACCAATTTGGTACTGCCCCGCTTATTTGGTTATTTGAAAGGTCAAGTTGGAT-TAA
1 TCTTCCACAACCAATTTGGTACTACCCCGCTTATTTGGTTATTTGAAAGGTCAAGAT-CATCTAA
31180204 TG-TCTCTTGACTCTTTAAAAATGCTGGAAACGTACTTATATTACAGGATCCCAACAACAAACTA
65 -GCTCTCTTGACTCTTTAAAAATGCTGGAAACGTACTTATATTACAGGATCCCAACAACAAACTA
*
31180268 CTCAGCATTGGAAAGGAGGAATTTGCATCATCAAAAGGAAACTGATTTGGAATATCAATCGCATT
129 CTCAACATTGGAAAGGAGGAATTTGCATCATCAAAAGGAAACTGATTTGGAATATCAATCGCATT
* *
31180333 GGAAGAAAGAATTACCCATGTAAGAGTGC
194 GGAAGAAAGAATTACACATCTAAGAGTGC
31180362 TCTTCCACAACCAATTTGG
1 TCTTCCACAACCAATTTGG
31180381 AACAAGACCC
Statistics
Matches: 223, Mismatches: 15, Indels: 6
0.91 0.06 0.02
Matches are distributed among these distances:
222 220 0.99
223 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.30
Consensus pattern (222 bp):
TCTTCCACAACCAATTTGGTACTACCCCGCTTATTTGGTTATTTGAAAGGTCAAGATCATCTAAG
CTCTCTTGACTCTTTAAAAATGCTGGAAACGTACTTATATTACAGGATCCCAACAACAAACTACT
CAACATTGGAAAGGAGGAATTTGCATCATCAAAAGGAAACTGATTTGGAATATCAATCGCATTGG
AAGAAAGAATTACACATCTAAGAGTGC
Found at i:31180943 original size:147 final size:148
Alignment explanation
Indices: 31180676--31180979 Score: 506
Period size: 147 Copynumber: 2.1 Consensus size: 148
31180666 AGAAGGTATT
* ** *
31180676 GATCCAG-AAAGTTGGTTCCATGACAAATCAAGATATTCAAGATTTGGAACTCCAGATCTATGAA
1 GATCCAGAAAAGGTGGTTAAATGACAAATCAAGATATGCAAGATTTGGAACTCCAGATCTATGAA
*
31180740 ATGGAGGGATCAAACCATTGAAATTGTTATCCGATAAATCCAATTCCACGAGGTTACTGAGATTT
66 ATGGAGGGATCAAACCATTGAAATGGTTATCCGATAAATCCAATTCCACGAGGTTACTGAGATTT
31180805 GCGATTGATGGTGGAATG
131 GCGATTGATGGTGGAATG
31180823 GATCC-GAAAAGGTGGTTAAATGACAAATCAAGATATGCAAGATTTGGAACTCCAGATCTATGAA
1 GATCCAGAAAAGGTGGTTAAATGACAAATCAAGATATGCAAGATTTGGAACTCCAGATCTATGAA
* * *
31180887 ATGGAGGGATCGAACCATTGAAATGGTTATCAC-TTAGATCCAATTCCACGAGGTTACTGAGATT
66 ATGGAGGGATCAAACCATTGAAATGGTTATC-CGATAAATCCAATTCCACGAGGTTACTGAGATT
31180951 TGCGATTGATGGTGGAATG
130 TGCGATTGATGGTGGAATG
31180970 GATCCAGAAA
1 GATCCAGAAA
31180980 TCTGGCCATA
Statistics
Matches: 146, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
146 1 0.01
147 140 0.96
148 5 0.03
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.27
Consensus pattern (148 bp):
GATCCAGAAAAGGTGGTTAAATGACAAATCAAGATATGCAAGATTTGGAACTCCAGATCTATGAA
ATGGAGGGATCAAACCATTGAAATGGTTATCCGATAAATCCAATTCCACGAGGTTACTGAGATTT
GCGATTGATGGTGGAATG
Found at i:31187892 original size:138 final size:138
Alignment explanation
Indices: 31187631--31187897 Score: 347
Period size: 138 Copynumber: 1.9 Consensus size: 138
31187621 TGTCGTATGT
** * * * *
31187631 TTGAGGATCCACAATTCCTCGCAGATAAAAGCTGTTAGAGAAAATTGTGAATGCTCTGTACATAT
1 TTGAGGATCCACAACCCCTCGCAGATAAAAGCTATAAGAGAAAATCGTGAATGCTCTATACATAT
* * * *
31187696 AGTCGTAGTTGGAATCTACTAATCTTTGAATAGACAATGACCATACTTATATGCAGTATAAACTA
66 AGTCGTAGTTGGAATCTACTAATCTATGAATACACAATGACCATACATAAATGCAGTATAAACTA
31187761 TCATTTGG
131 TCATTTGG
* * * *
31187769 TTGAGGATCCACAACCCCTCTCAGATAAAAGCTATAAGAGAAAGTCGTGGATGTTCTATACATAT
1 TTGAGGATCCACAACCCCTCGCAGATAAAAGCTATAAGAGAAAATCGTGAATGCTCTATACATAT
* * * * *
31187834 GGTCGTAGTTGGAATCTACTAATCTATGAATACATAGTGGACGA-ACATAAATGTAGTATAAACT
66 AGTCGTAGTTGGAATCTACTAATCTATGAATACACAAT-GACCATACATAAATGCAGTATAAACT
31187898 GTTGTACCTT
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
138 105 0.96
139 4 0.04
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (138 bp):
TTGAGGATCCACAACCCCTCGCAGATAAAAGCTATAAGAGAAAATCGTGAATGCTCTATACATAT
AGTCGTAGTTGGAATCTACTAATCTATGAATACACAATGACCATACATAAATGCAGTATAAACTA
TCATTTGG
Found at i:31188246 original size:69 final size:69
Alignment explanation
Indices: 31188047--31188246 Score: 276
Period size: 69 Copynumber: 2.9 Consensus size: 69
31188037 ATAACATTTA
* * * * * * *
31188047 ATAATCATTCACAGATTAAAATAATTATTCTTTAAGTAATCATATTCCATCGACAATCATGAGCA
1 ATAATCAATCACGGATTAAAATAATCATTC-CTAAGCAATCATATTCCATCGATAATCATGGGCA
31188112 TAAAC
65 TAAAC
* * *
31188117 ATAATCAATCATGGATTTAGATAATCATTCCTAAGCAATCATATTCCATTC-ATAATCATGGGCA
1 ATAATCAATCACGGATTAAAATAATCATTCCTAAGCAATCATATTCCA-TCGATAATCATGGGCA
31188181 TAAAC
65 TAAAC
*
31188186 ATAATCAATCACGGATTAAAATAAGCATTCCTAAGCAATCATATTCCATCGATAATCATGG
1 ATAATCAATCACGGATTAAAATAATCATTCCTAAGCAATCATATTCCATCGATAATCATGG
31188247 TATCATTCAT
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
68 2 0.02
69 86 0.75
70 26 0.23
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (69 bp):
ATAATCAATCACGGATTAAAATAATCATTCCTAAGCAATCATATTCCATCGATAATCATGGGCAT
AAAC
Found at i:31189735 original size:23 final size:24
Alignment explanation
Indices: 31189702--31189749 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
31189692 TTACTTTACA
*
31189702 TATTTACCTAT-TTTTTTAA-ACT
1 TATTTACCTATAGTTTTTAATACT
31189724 TATTTAACCTATAGTTTTTAATACT
1 TATTT-ACCTATAGTTTTTAATACT
31189749 T
1 T
31189750 TCTTCTCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 5 0.23
23 6 0.27
24 7 0.32
25 4 0.18
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.56
Consensus pattern (24 bp):
TATTTACCTATAGTTTTTAATACT
Found at i:31190904 original size:24 final size:24
Alignment explanation
Indices: 31190873--31190925 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
31190863 ATAGCCCGAA
** *
31190873 TACACCGGCACGAAGCCTGCTAGG
1 TACACCGGCAAAAAGCCTGCTAAG
31190897 TACACCGGCAAAAAGCCTGCTAAG
1 TACACCGGCAAAAAGCCTGCTAAG
31190921 TACAC
1 TACAC
31190926 AGCTTGAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.32, C:0.32, G:0.23, T:0.13
Consensus pattern (24 bp):
TACACCGGCAAAAAGCCTGCTAAG
Found at i:31190935 original size:61 final size:61
Alignment explanation
Indices: 31190838--31190957 Score: 168
Period size: 61 Copynumber: 2.0 Consensus size: 61
31190828 GTTCTTAGAT
* * * * *
31190838 CACCGGCACAAAGCCTGCTAGGCACATAGCCCGAATACACCGGCACGAAGCCTGCTAGGTA
1 CACCGGCAAAAAGCCTGCTAAGCACACAGCCCGAATACACCGACACAAAGCCTGCTAGGTA
* **
31190899 CACCGGCAAAAAGCCTGCTAAGTACACAGCTTGAATACACCGACACAAAGCCTGCTAGG
1 CACCGGCAAAAAGCCTGCTAAGCACACAGCCCGAATACACCGACACAAAGCCTGCTAGG
31190958 CACATAACCT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.33, C:0.33, G:0.23, T:0.12
Consensus pattern (61 bp):
CACCGGCAAAAAGCCTGCTAAGCACACAGCCCGAATACACCGACACAAAGCCTGCTAGGTA
Found at i:31190971 original size:37 final size:37
Alignment explanation
Indices: 31190897--31190972 Score: 89
Period size: 37 Copynumber: 2.1 Consensus size: 37
31190887 GCCTGCTAGG
* * * *
31190897 TACACCGGCAAAAAGCCTGCTAAGTACACAGCTTGAA
1 TACACCGACAAAAAGCCTGCTAAGCACACAACCTGAA
* * *
31190934 TACACCGACACAAAGCCTGCTAGGCACATAACCTGAA
1 TACACCGACAAAAAGCCTGCTAAGCACACAACCTGAA
31190971 TA
1 TA
31190973 TTGTGCAACT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.29, G:0.17, T:0.16
Consensus pattern (37 bp):
TACACCGACAAAAAGCCTGCTAAGCACACAACCTGAA
Found at i:31192329 original size:17 final size:18
Alignment explanation
Indices: 31192293--31192331 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
31192283 AATGGGATAA
*
31192293 AAATTTATTTTTTAAATT
1 AAATTTATTTTTGAAATT
*
31192311 AAATTTA-TTTTGAATTT
1 AAATTTATTTTTGAAATT
31192328 AAAT
1 AAAT
31192332 ATAAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
AAATTTATTTTTGAAATT
Found at i:31192793 original size:23 final size:23
Alignment explanation
Indices: 31192760--31192821 Score: 74
Period size: 21 Copynumber: 2.8 Consensus size: 23
31192750 ATATTAATGT
*
31192760 AGTAGCAGAATAGACTCACATCC
1 AGTAGCCGAATAGACTCACATCC
** *
31192783 AGTATTCGAAT--ACCCACATCC
1 AGTAGCCGAATAGACTCACATCC
31192804 AGTAGCCGAATAGACTCA
1 AGTAGCCGAATAGACTCA
31192822 AAGTTCAAAC
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 18 0.60
23 12 0.40
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.19
Consensus pattern (23 bp):
AGTAGCCGAATAGACTCACATCC
Found at i:31193072 original size:10 final size:10
Alignment explanation
Indices: 31193057--31193090 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
31193047 AATCAAATTC
*
31193057 ATTAATATTA
1 ATTAATAATA
31193067 ATTAATAATA
1 ATTAATAATA
*
31193077 ATAAATAATA
1 ATTAATAATA
31193087 ATTA
1 ATTA
31193091 TTAAAAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATTAATAATA
Found at i:31194113 original size:30 final size:30
Alignment explanation
Indices: 31194077--31194186 Score: 134
Period size: 30 Copynumber: 3.7 Consensus size: 30
31194067 CCCTGGATTG
* *
31194077 TCTAAAAATTATATTTTGACCCCAAAACTT
1 TCTAAAAATTACATTTTGACCCCTAAACTT
*
31194107 TCTAAAAATTACATTTTAACCCCTAAACTT
1 TCTAAAAATTACATTTTGACCCCTAAACTT
* *
31194137 CCCAAAAATTACCATTTT-ACCCCTAAACTT
1 TCTAAAAATTA-CATTTTGACCCCTAAACTT
* *
31194167 TC-CAAAATTCCATTTTGACC
1 TCTAAAAATTACATTTTGACC
31194187 TCTATTTCAC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
28 6 0.09
29 9 0.13
30 49 0.70
31 6 0.09
ACGTcount: A:0.37, C:0.26, G:0.02, T:0.35
Consensus pattern (30 bp):
TCTAAAAATTACATTTTGACCCCTAAACTT
Found at i:31194205 original size:59 final size:58
Alignment explanation
Indices: 31194080--31194303 Score: 247
Period size: 59 Copynumber: 3.8 Consensus size: 58
31194070 TGGATTGTCT
* * * * *
31194080 AAAAATTA-TATTTTGACCCCAAAACTTTCTAAAAATTACATTTTAACCCCTAAACTTC-CC
1 AAAAATTACCATTTT-ACCCCTAAACTTTCT-AAAATTCCATTTTAACCTCT--ATTTCACC
* *
31194140 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTGACCTCTATTTCACC
1 AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTAACCTCTATTTCACC
* * * *
31194198 AAAAAATTACCATTTTACCCTTGAACTTTCTAAAATTCTATTTTAACCTCGATTTCACC
1 -AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTAACCTCTATTTCACC
* * *
31194257 -AAAATTATCATTTTACCCCTAAACCTTCTAAAATCCCATTTTTAACC
1 AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCA-TTTTAACC
31194304 AAGAAATTTT
Statistics
Matches: 141, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
57 36 0.26
58 10 0.07
59 69 0.49
60 21 0.15
61 5 0.04
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTAACCTCTATTTCACC
Found at i:31194271 original size:29 final size:29
Alignment explanation
Indices: 31194168--31194271 Score: 81
Period size: 28 Copynumber: 3.6 Consensus size: 29
31194158 CCTAAACTTT
* *
31194168 CCAAAATT-CCATTTTGACCTCTATTTCA
1 CCAAAATTACCATTTTAACCTCGATTTCA
* *
31194196 CCAAAAAATTACCATTTTACCCTTGAACTTT--
1 CC--AAAATTACCATTTTAACCTCG-A-TTTCA
* *
31194227 CTAAAATT-CTATTTTAACCTCGATTTCA
1 CCAAAATTACCATTTTAACCTCGATTTCA
*
31194255 CCAAAATTATCATTTTA
1 CCAAAATTACCATTTTA
31194272 CCCCTAAACC
Statistics
Matches: 57, Mismatches: 11, Indels: 15
0.69 0.13 0.18
Matches are distributed among these distances:
26 3 0.05
27 1 0.02
28 20 0.35
29 12 0.21
30 6 0.11
31 11 0.19
32 1 0.02
33 3 0.05
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (29 bp):
CCAAAATTACCATTTTAACCTCGATTTCA
Found at i:31194289 original size:29 final size:29
Alignment explanation
Indices: 31194081--31194298 Score: 114
Period size: 30 Copynumber: 7.5 Consensus size: 29
31194071 GGATTGTCTA
* *
31194081 AAAATTA-TATTTTGACCCCAAAACTTTCT
1 AAAATTACCATTTT-ACCCCTAAACTTTCT
* *
31194110 AAAAATTA-CATTTTAACCCCTAAACTTCCCA
1 -AAAATTACCATTTT-ACCCCTAAACTT-TCT
*
31194141 AAAATTACCATTTTACCCCTAAACTTTCC
1 AAAATTACCATTTTACCCCTAAACTTTCT
* *
31194170 AAAATT-CCATTTTGACCTCT--A-TTTCACCAA
1 AAAATTACCATTTT-ACCCCTAAACTTT---C-T
* *
31194200 AAAATTACCATTTTACCCTTGAACTTTCT
1 AAAATTACCATTTTACCCCTAAACTTTCT
* * ** *
31194229 AAAATT-CTATTTTA-ACCTCGA-TTTCACC
1 AAAATTACCATTTTACCCCTAAACTTT--CT
* *
31194257 AAAATTATCATTTTACCCCTAAACCTTCT
1 AAAATTACCATTTTACCCCTAAACTTTCT
*
31194286 AAAA-TCCCATTTT
1 AAAATTACCATTTT
31194299 TAACCAAGAA
Statistics
Matches: 145, Mismatches: 27, Indels: 34
0.70 0.13 0.17
Matches are distributed among these distances:
26 6 0.04
27 4 0.03
28 28 0.19
29 30 0.21
30 57 0.39
31 16 0.11
32 1 0.01
33 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.02, T:0.37
Consensus pattern (29 bp):
AAAATTACCATTTTACCCCTAAACTTTCT
Found at i:31207939 original size:23 final size:23
Alignment explanation
Indices: 31207905--31207967 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 23
31207895 AATATGAATG
31207905 CAGTAG-CAGAATAGACTCACATC
1 CAGTAGTC-GAATAGACTCACATC
* *
31207928 CAGTATTCGAAT--ACCCACATC
1 CAGTAGTCGAATAGACTCACATC
*
31207949 CAGTAGTCGAATAGGCTCA
1 CAGTAGTCGAATAGACTCA
31207968 AAGTTCAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 19 0.59
23 12 0.38
24 1 0.03
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (23 bp):
CAGTAGTCGAATAGACTCACATC
Found at i:31207948 original size:21 final size:21
Alignment explanation
Indices: 31207922--31207961 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31207912 AGAATAGACT
*
31207922 CACATCCAGTATTCGAATACC
1 CACATCCAGTAGTCGAATACC
31207943 CACATCCAGTAGTCGAATA
1 CACATCCAGTAGTCGAATA
31207962 GGCTCAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.30, G:0.12, T:0.23
Consensus pattern (21 bp):
CACATCCAGTAGTCGAATACC
Found at i:31208218 original size:10 final size:10
Alignment explanation
Indices: 31208203--31208236 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
31208193 AATCAAATTC
*
31208203 ATTAATATTA
1 ATTAATAATA
31208213 ATTAATAATA
1 ATTAATAATA
*
31208223 ATAAATAATA
1 ATTAATAATA
31208233 ATTA
1 ATTA
31208237 TTAAAAAAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
ATTAATAATA
Found at i:31209274 original size:30 final size:29
Alignment explanation
Indices: 31209232--31209459 Score: 161
Period size: 30 Copynumber: 7.7 Consensus size: 29
31209222 TGACTGTCCA
*
31209232 AAAATTATATTTTGACCCCAAAACTTTTT
1 AAAATTACATTTTGACCCCAAAACTTTTT
* * * *
31209261 AGAAATTACATTTTAACCCTAAAAATTTTCC
1 A-AAATTACATTTTGACCCCAAAACTTTT-T
* * * * *
31209292 AAAATTATATTTTAACCCTATAATTTTTT
1 AAAATTACATTTTGACCCCAAAACTTTTT
* *
31209321 GAAAATTACATTTTAACCCTAAAACTTTTCT
1 -AAAATTACATTTTGACCCCAAAACTTTT-T
* * * *
31209352 AAAATTATAATTTGACCCCAAAAATTTCTA
1 AAAATTACATTTTGACCCCAAAACTTT-TT
* ***
31209382 AAAATTACATTTTGACCCCCAAACTTCCCA
1 AAAATTACATTTTGACCCCAAAACTT-TTT
* * * *
31209412 AAAATTACCATTTT-ATCTCTAAACTTTTC
1 AAAATTA-CATTTTGACCCCAAAACTTTTT
*
31209441 AAAATTCCATTTTGACCCC
1 AAAATTACATTTTGACCCC
31209460 GATTTCACCA
Statistics
Matches: 158, Mismatches: 33, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
28 6 0.04
29 10 0.06
30 133 0.84
31 9 0.06
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.38
Consensus pattern (29 bp):
AAAATTACATTTTGACCCCAAAACTTTTT
Found at i:31209386 original size:90 final size:90
Alignment explanation
Indices: 31209232--31209399 Score: 214
Period size: 90 Copynumber: 1.9 Consensus size: 90
31209222 TGACTGTCCA
* * * * *
31209232 AAAATTATATTTTGACCCCAAAACTTTTTAGAAATTACATTTTAACCCTAAAAATTTTCCAAAAT
1 AAAATTACATTTTAACCCCAAAACTTTTTAGAAATTACAATTTAACCCCAAAAATTTTCAAAAAT
*
31209297 TATATTTTAACCCTATAATTTTTTG
66 TACATTTTAACCCTATAATTTTTTG
* * *
31209322 AAAATTACATTTTAACCCTAAAACTTTTCTA-AAATTATAATTTGACCCCAAAAA-TTTCTAAAA
1 AAAATTACATTTTAACCCCAAAACTTTT-TAGAAATTACAATTTAACCCCAAAAATTTTC-AAAA
*
31209385 ATTACATTTTGACCC
64 ATTACATTTTAACCC
31209400 CCAAACTTCC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
89 4 0.06
90 60 0.91
91 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.39
Consensus pattern (90 bp):
AAAATTACATTTTAACCCCAAAACTTTTTAGAAATTACAATTTAACCCCAAAAATTTTCAAAAAT
TACATTTTAACCCTATAATTTTTTG
Found at i:31209407 original size:60 final size:60
Alignment explanation
Indices: 31209232--31209399 Score: 228
Period size: 60 Copynumber: 2.8 Consensus size: 60
31209222 TGACTGTCCA
* * *
31209232 AAAATTATATTTTGACCCCAAAACTTTTTAGAAATTACATTTTAACCCTAAAAATTTTCC
1 AAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCTAAAACTTTTCC
* * * * * *
31209292 AAAATTATATTTTAACCCTATAATTTTTTGAAAATTACATTTTAACCCTAAAACTTTTCT
1 AAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCTAAAACTTTTCC
* * *
31209352 AAAATTATAATTTGACCCCAAAAATTTCTAAAAATTACATTTTGACCC
1 AAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCC
31209400 CCAAACTTCC
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 92 1.00
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.39
Consensus pattern (60 bp):
AAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCTAAAACTTTTCC
Found at i:31209416 original size:60 final size:60
Alignment explanation
Indices: 31209228--31209418 Score: 213
Period size: 60 Copynumber: 3.2 Consensus size: 60
31209218 TCCTTGACTG
* * *
31209228 TCCAAAAATTATATTTTGACCCCAAAACTTTTTAGAAATTACATTTTAACCCTAAAAATTT
1 TCCAAAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCC-AAAAACTT
* * * * * *
31209289 TCC-AAAATTATATTTTAACCCTATAATTTTTTGAAAATTACATTTTAACCCTAAAACTT
1 TCCAAAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCAAAAACTT
* * * * * **
31209348 TTCTAAAATTATAATTTGACCCCAAAAATTTCTAAAAATTACATTTTGACCCCCAAACTT
1 TCCAAAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCAAAAACTT
*
31209408 CCCAAAAATTA
1 TCCAAAAATTA
31209419 CCATTTTATC
Statistics
Matches: 107, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
59 8 0.07
60 96 0.90
61 3 0.03
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.37
Consensus pattern (60 bp):
TCCAAAAATTATATTTTGACCCCAAAAATTTTTAAAAATTACATTTTAACCCAAAAACTT
Found at i:31209495 original size:58 final size:59
Alignment explanation
Indices: 31209382--31209503 Score: 142
Period size: 58 Copynumber: 2.1 Consensus size: 59
31209372 AAAATTTCTA
* * *
31209382 AAAATTACATTTTGACCCCCAAACTTCCCAAAAATTACCATTTTATCTCTAAACTTTTC
1 AAAATTACATTTTGACCCCCAAACTTCCCAAAAACTACCATTTTACCTCTAAACTTTCC
* * * *
31209441 AAAATTCCATTTTGA-CCCC-GATTTCACCAAAAACTACCATTTTACC-CTCGAACTTTCC
1 AAAATTACATTTTGACCCCCAAACTTC-CCAAAAACTACCATTTTACCTCT-AAACTTTCC
31209499 AAAAT
1 AAAAT
31209504 CCTTTTTTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
57 6 0.11
58 34 0.63
59 14 0.26
ACGTcount: A:0.35, C:0.29, G:0.03, T:0.33
Consensus pattern (59 bp):
AAAATTACATTTTGACCCCCAAACTTCCCAAAAACTACCATTTTACCTCTAAACTTTCC
Found at i:31212973 original size:21 final size:21
Alignment explanation
Indices: 31212936--31212975 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
31212926 GAAAAAAACT
*
31212936 TGAGTTTTATAGAGAAAAATC
1 TGAGTTTTATACAGAAAAATC
31212957 TGAGTTTT-TACATGAAAAA
1 TGAGTTTTATACA-GAAAAA
31212976 ACCATATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.42, C:0.05, G:0.17, T:0.35
Consensus pattern (21 bp):
TGAGTTTTATACAGAAAAATC
Found at i:31214451 original size:144 final size:146
Alignment explanation
Indices: 31214207--31214472 Score: 389
Period size: 144 Copynumber: 1.8 Consensus size: 146
31214197 GCCCGTGGGC
*
31214207 AAAATGGTAATTTTGGACTCTCAGGGGCAAAAATGGCAATTTTGGAAAAATTTAGGGTTAAAAAT
1 AAAATAGTAATTTTGGACTCTCAGGGGCAAAAATGGCAATTTTGGAAAAATTTAGGGTTAAAAAT
* * * * *
31214272 GATATTTTAGACACTTAAGGGTAAAATGGTAA-TTTTTAGAAGAATCGGGATCAAAACGGAACTT
66 GACATTTTAGACACTCAAGGGTAAAACGGTAATTTTTTAGAAAAATCAGGATCAAAACGGAACTT
31214336 TTGGATGTTCGAGGGT
131 TTGGATGTTCGAGGGT
* *
31214352 AAAATAGTAA-TTTGGACTTTCAGGGGC-AAAATGGCAATTTTGGGAAAAATTTAGGGTTTAAAA
1 AAAATAGTAATTTTGGACTCTCAGGGGCAAAAATGGCAATTTT-GGAAAAATTTAGGGTTAAAAA
*
31214415 TGACATTTTAGACAAC-CGAGGGTAAAAACGGT-ATTTTTTAGAAAAATCAGGATCAAAA
65 TGACATTTTAGAC-ACTCAAGGGT-AAAACGGTAATTTTTTAGAAAAATCAGGATCAAAA
31214473 ATGTGATTTT
Statistics
Matches: 108, Mismatches: 9, Indels: 8
0.86 0.07 0.06
Matches are distributed among these distances:
143 14 0.13
144 54 0.50
145 40 0.37
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (146 bp):
AAAATAGTAATTTTGGACTCTCAGGGGCAAAAATGGCAATTTTGGAAAAATTTAGGGTTAAAAAT
GACATTTTAGACACTCAAGGGTAAAACGGTAATTTTTTAGAAAAATCAGGATCAAAACGGAACTT
TTGGATGTTCGAGGGT
Found at i:31214589 original size:58 final size:58
Alignment explanation
Indices: 31214495--31214730 Score: 248
Period size: 58 Copynumber: 4.1 Consensus size: 58
31214485 GGCATCTGAG
* *
31214495 GGGT-AAAATCGTAATTTCAGG-AGTTTCGGGGTTAAAAATGGAATTTTTGGAAGTTCGA
1 GGGTAAAAAT-GTAATTTTAGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAGTT-GA
* * *
31214553 GGG-CAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAGTTTA
1 GGGTAAAAATGTAATTTTAGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAGTTGA
** * *
31214610 GGGGTAAAAATGTAATTTTTTGAAGTTTTAGGGTT-AAAATGGGATTTTTGGAAGTTTGA
1 -GGGTAAAAATGTAATTTTAGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAG-TTGA
* * * ** *
31214669 GGGTAAAAATGTAATTTTAGAGAAG-TTCGGGGGTCAAAATACAATTTTTGGATAGTTTA
1 GGGTAAAAATGTAATTTTAG-GAAGTTTTGGGGTTAAAAATGGAATTTTTGGA-AGTTGA
31214728 GGG
1 GGG
31214731 ACCCTTAGAG
Statistics
Matches: 152, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
57 10 0.07
58 86 0.57
59 54 0.36
60 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.36
Consensus pattern (58 bp):
GGGTAAAAATGTAATTTTAGGAAGTTTTGGGGTTAAAAATGGAATTTTTGGAAGTTGA
Found at i:31214598 original size:30 final size:29
Alignment explanation
Indices: 31214516--31214726 Score: 196
Period size: 29 Copynumber: 7.2 Consensus size: 29
31214506 TAATTTCAGG
31214516 AGTTTCGGGGTTAAAAATGGAATTTTTGGA
1 AGTTTCGGGG-TAAAAATGGAATTTTTGGA
* *
31214546 AG-TTCGAGGG-CAAAATGTAATTTTTGGA
1 AGTTTCG-GGGTAAAAATGGAATTTTTGGA
*
31214574 AGTTTTGGGGTTAAAAATGGAATTTTTGGA
1 AGTTTCGGGG-TAAAAATGGAATTTTTGGA
* * *
31214604 AGTTTAGGGGTAAAAATGTAATTTTTTGA
1 AGTTTCGGGGTAAAAATGGAATTTTTGGA
** * *
31214633 AGTTTTAGGGTTAAAATGGGATTTTTGGA
1 AGTTTCGGGGTAAAAATGGAATTTTTGGA
* *
31214662 AGTTT-GAGGGTAAAAATGTAATTTTAGAGA
1 AGTTTCG-GGGTAAAAATGGAATTTTTG-GA
* **
31214692 AG-TTCGGGGGTCAAAATACAATTTTTGGA
1 AGTTTC-GGGGTAAAAATGGAATTTTTGGA
31214721 TAGTTT
1 -AGTTT
31214727 AGGGACCCTT
Statistics
Matches: 148, Mismatches: 23, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
28 21 0.14
29 72 0.49
30 52 0.35
31 3 0.02
ACGTcount: A:0.32, C:0.03, G:0.28, T:0.37
Consensus pattern (29 bp):
AGTTTCGGGGTAAAAATGGAATTTTTGGA
Found at i:31215937 original size:31 final size:30
Alignment explanation
Indices: 31215898--31215956 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
31215888 AGTTTCTTTT
*
31215898 TATTATATTATTACTAATATTTATTAATAA
1 TATTATATTATTACTAATACTTATTAATAA
* *
31215928 TATTAATATTTTTATTAATACTTATTAAT
1 TATT-ATATTATTACTAATACTTATTAAT
31215957 GCTATTTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (30 bp):
TATTATATTATTACTAATACTTATTAATAA
Found at i:31215953 original size:22 final size:22
Alignment explanation
Indices: 31215894--31215956 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
31215884 TTTTAGTTTC
*
31215894 TTTTTATT-ATATTATTACTAA
1 TTTTTATTAATATTATTAATAA
* *
31215915 TATTTATTAATAATATTAAT-A
1 TTTTTATTAATATTATTAATAA
31215936 TTTTTATTAATACTTATTAAT
1 TTTTTATTAATA-TTATTAAT
31215957 GCTATTTACT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 19 0.54
22 16 0.46
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTTATTAATATTATTAATAA
Found at i:31216765 original size:17 final size:15
Alignment explanation
Indices: 31216743--31216837 Score: 100
Period size: 17 Copynumber: 5.7 Consensus size: 15
31216733 TATTTTTATA
31216743 TTAAATTTAATAATATT
1 TTAAATTTAATAA-A-T
31216760 TTAAATTTAATTAAAT
1 TTAAATTTAA-TAAAT
31216776 TTAAATTTAAAGTAAAT
1 TTAAATTT-AA-TAAAT
31216793 TTAAATTTAGATAAAT
1 TTAAATTTA-ATAAAT
*
31216809 TTAAATTTAAAATTAAT
1 TTAAATTT--AATAAAT
31216826 TTAAACTTTAAT
1 TTAAA-TTTAAT
31216838 TAAAAACCAA
Statistics
Matches: 70, Mismatches: 2, Indels: 13
0.82 0.02 0.15
Matches are distributed among these distances:
16 26 0.37
17 37 0.53
18 7 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.47
Consensus pattern (15 bp):
TTAAATTTAATAAAT
Found at i:31216768 original size:6 final size:6
Alignment explanation
Indices: 31216759--31216836 Score: 78
Period size: 6 Copynumber: 13.8 Consensus size: 6
31216749 TTAATAATAT
* *
31216759 TTTAAA TTT-AA -TTAAA TTTAAA TTTAAA -GTAAA TTTAAA TTTAGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
31216804 --TAAA TTTAAA TTTAAA ATT-AA TTTAAA CTTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA -TTTAA
31216837 TTAAAAACCA
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
4 5 0.08
5 12 0.20
6 37 0.63
7 5 0.08
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:31216785 original size:33 final size:32
Alignment explanation
Indices: 31216743--31216841 Score: 114
Period size: 33 Copynumber: 3.0 Consensus size: 32
31216733 TATTTTTATA
31216743 TTAAATTTAATAATATTTTAAATTTAATTAAAT
1 TTAAATTTAATAATA-TTTAAATTTAATTAAAT
31216776 TTAAATTTAAAGTAA-ATTTAAATTTAGA-TAAAT
1 TTAAATTT-AA-TAATATTTAAATTTA-ATTAAAT
31216809 TTAAATTTAA-AATTAATTTAAACTTTAATTAAA
1 TTAAATTTAATAA-T-ATTTAAA-TTTAATTAAA
31216842 AACCAAAAGC
Statistics
Matches: 58, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
30 2 0.03
32 2 0.03
33 39 0.67
34 12 0.21
35 3 0.05
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (32 bp):
TTAAATTTAATAATATTTAAATTTAATTAAAT
Found at i:31217414 original size:92 final size:92
Alignment explanation
Indices: 31217099--31217826 Score: 1167
Period size: 92 Copynumber: 7.9 Consensus size: 92
31217089 TGATGTCGAG
31217099 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217164 TCAAGAGGATAAGAATTGATG-TTGAT
66 TCAAGAGGATAGGAAATGATGTTTGAT
* * *
31217190 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGACTTCCTATCCAACTTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
*
31217255 TCAAGAGGATAGGAAATGACG-TTGAT
66 TCAAGAGGATAGGAAATGATGTTTGAT
* *
31217281 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAAATTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
*
31217346 TCAAGAGGATAGGAAATGATGTTTGGT
66 TCAAGAGGATAGGAAATGATGTTTGAT
** *
31217373 GCTTCATCTAACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAATT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
31217438 TCAAGAGGATAGGAAATGATGTTTGAT
66 TCAAGAGGATAGGAAATGATGTTTGAT
*
31217465 GCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
*
31217530 TCAAGAGGATAGGAATTTGATGTTTGAT
66 TCAAGAGGATAGGAA-ATGATGTTTGAT
* *
31217558 GCTTCATCTAT-CTCTTACTACAACTTCAGAGAGATAAAAACTTGCTAACCAACTTTACTACAAC
1 GCTTCATCT-TGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAAC
* *
31217622 TTTAAGAGGATAGGAAATAATGTTTGAT
65 TTCAAGAGGATAGGAAATGATGTTTGAT
*
31217650 GGTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217715 TCATGAGGATAGGAATTTGATG-TTGAT
66 TCAAGAGGATAGGAA-ATGATGTTTGAT
* * *
31217742 GCTTCGTCTTGCTCTTACTACAACTTCAAAGAGATAAAGACTTGCTATCCAGCTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217807 TCAAGAGGATGGGAATTGAT
66 TCAAGAGGATAGGAAATGAT
31217827 ATTATTTTGA
Statistics
Matches: 591, Mismatches: 41, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
91 173 0.29
92 328 0.55
93 89 0.15
94 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (92 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
TCAAGAGGATAGGAAATGATGTTTGAT
Found at i:31217636 original size:185 final size:183
Alignment explanation
Indices: 31217099--31217826 Score: 1181
Period size: 185 Copynumber: 4.0 Consensus size: 183
31217089 TGATGTCGAG
31217099 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217164 TCAAGAGGATAAGAATTGATGTTGATGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAG
66 TCAAGAGGATAGGAATTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAG
* * *
31217229 ACTTCCTATCCAACTTTACTATAACTTCAAGAGGATAGGAAATGACG-TTGAT
131 ACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAAATGATGTTTGAT
* *
31217281 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAAATTTACTATAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* * **
31217346 TCAAGAGGATAGGAAATGATGTTTGGTGCTTCATCTAACTCTTACTACAACTTCAGAGAGATAAA
66 TCAAGAGGATAGGAATTGATG-TTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAA
*
31217411 GACTTGCTATCCAACTTTACTACAATTTCAAGAGGATAGGAAATGATGTTTGAT
130 GACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAAATGATGTTTGAT
*
31217465 GCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
31217530 TCAAGAGGATAGGAATTTGATGTTTGATGCTTCATCTAT-CTCTTACTACAACTTCAGAGAGATA
66 TCAAGAGGATAGGAA-TTGATG-TTGATGCTTCATCT-TGCTCTTACTACAACTTCAGAGAGATA
* * * *
31217594 AAAACTTGCTAACCAACTTTACTACAACTTTAAGAGGATAGGAAATAATGTTTGAT
128 AAGACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAAATGATGTTTGAT
*
31217650 GGTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* * *
31217715 TCATGAGGATAGGAATTTGATGTTGATGCTTCGTCTTGCTCTTACTACAACTTCAAAGAGATAAA
66 TCAAGAGGATAGGAA-TTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAA
* * *
31217780 GACTTGCTATCCAGCTTTACTACAACTTCAAGAGGATGGGAATTGAT
130 GACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAAATGAT
31217827 ATTATTTTGA
Statistics
Matches: 506, Mismatches: 35, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
182 82 0.16
183 84 0.17
184 161 0.32
185 179 0.35
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (183 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
TCAAGAGGATAGGAATTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAG
ACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAAATGATGTTTGAT
Found at i:31217658 original size:277 final size:275
Alignment explanation
Indices: 31217099--31217823 Score: 1184
Period size: 277 Copynumber: 2.6 Consensus size: 275
31217089 TGATGTCGAG
31217099 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217164 TCAAGAGGATAAGAATTGATGTTGATGCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAG
66 TCAAGAGGATAGGAATTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAG
* * *
31217229 ACTTCCTATCCAACTTTACTATAACTTCAAGAGGATAGGAA-ATGACGTTGATGCTTCATCTTGC
131 ACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATTTGACGTTGATGCTTCATCTTGC
* * *
31217293 TCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAAATTTACTATAACTTCAAGAGGATAG
196 TCTTACTACAACTTCAGAGAGATAAAAACTTGCTAACCAAATTTACTACAACTTCAAGAGGATAG
* *
31217358 GAAATGATGTTTGGT
261 GAAATAATGTTTGAT
** *
31217373 GCTTCATCTAACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAATT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* *
31217438 TCAAGAGGATAGGAAATGATGTTTGATGCTTCATCTTGCTCTTACTACAACTTTAGAGAGATAAA
66 TCAAGAGGATAGGAATTGATG-TTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAA
*
31217503 GACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATTTGATGTTTGATGCTTCATCTA
130 GACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATTTGACG-TTGATGCTTCATCT-
* *
31217568 T-CTCTTACTACAACTTCAGAGAGATAAAAACTTGCTAACCAACTTTACTACAACTTTAAGAGGA
193 TGCTCTTACTACAACTTCAGAGAGATAAAAACTTGCTAACCAAATTTACTACAACTTCAAGAGGA
31217632 TAGGAAATAATGTTTGAT
258 TAGGAAATAATGTTTGAT
*
31217650 GGTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
* * *
31217715 TCATGAGGATAGGAATTTGATGTTGATGCTTCGTCTTGCTCTTACTACAACTTCAAAGAGATAAA
66 TCAAGAGGATAGGAA-TTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAA
* *
31217780 GACTTGCTATCCAGCTTTACTACAACTTCAAGAGGATGGGAATT
130 GACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATT
31217824 GATATTATTT
Statistics
Matches: 417, Mismatches: 29, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
274 81 0.19
275 81 0.19
276 4 0.01
277 245 0.59
278 6 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (275 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTACAACT
TCAAGAGGATAGGAATTGATGTTGATGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAG
ACTTGCTATCCAACTTTACTACAACTTCAAGAGGATAGGAATTTGACGTTGATGCTTCATCTTGC
TCTTACTACAACTTCAGAGAGATAAAAACTTGCTAACCAAATTTACTACAACTTCAAGAGGATAG
GAAATAATGTTTGAT
Found at i:31229523 original size:28 final size:28
Alignment explanation
Indices: 31229490--31229548 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
31229480 AAAATGAGAC
* *
31229490 TTTGGA-TGCCCGGGGGAAAAATGGTAAT
1 TTTGGACT-CCCGGGGCAAAAATGATAAT
*
31229518 TTTGGACTCTCGGGGCAAAAATGATAAT
1 TTTGGACTCCCGGGGCAAAAATGATAAT
31229546 TTT
1 TTT
31229549 TGAAAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 26 0.96
29 1 0.04
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.31
Consensus pattern (28 bp):
TTTGGACTCCCGGGGCAAAAATGATAAT
Found at i:31229755 original size:30 final size:30
Alignment explanation
Indices: 31229711--31230057 Score: 290
Period size: 30 Copynumber: 11.7 Consensus size: 30
31229701 TTCGGTGGGT
*
31229711 AAAATGGTAA-TTTT-GAGAGTTTTGGGGTCA
1 AAAATGG-AATTTTTGGA-AGTTTCGGGGTCA
31229741 AAAATGGAATTTTTGGAAG-TTCAGGGG-C-
1 AAAATGGAATTTTTGGAAGTTTC-GGGGTCA
* * *
31229769 AAAATGTAATTTTTGGAAGTGTCGGGGTTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
* *
31229799 AAAATGAAATTTTTGGAAG-TTCGAGAG-CA
1 AAAATGGAATTTTTGGAAGTTTCG-GGGTCA
* * * *
31229828 AAAATGTAATTTTTTGAAGTTTCGAGGTAA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
31229858 AAAATGGAATTTTTGGAAGTTT-GAGGG-CA
1 AAAATGGAATTTTTGGAAGTTTCG-GGGTCA
* * * *
31229887 AAAATGTATTTTTTTGAAGTTTTGGGGTCA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
31229917 AAAATGGAATTTTTGGAAG-TTCGAGGGT-A
1 AAAATGGAATTTTTGGAAGTTTCG-GGGTCA
* * * ** *
31229946 AAATTGTAATTTTTTGAAGTTTCAAGGTTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
*
31229976 AAAATGGAATTTTTGGAAGTTTGGGGGT-A
1 AAAATGGAATTTTTGGAAGTTTCGGGGTCA
* *
31230005 AAAATGTAATTTTAGAGAAGTTT-GAGGGTC-
1 AAAATGGAATTTTTG-GAAGTTTCG-GGGTCA
**
31230035 AAAATACAATTTTTGGATAGTTT
1 AAAATGGAATTTTTGGA-AGTTT
31230058 AGGGACCTTA
Statistics
Matches: 258, Mismatches: 40, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
28 22 0.09
29 93 0.36
30 141 0.55
31 2 0.01
ACGTcount: A:0.34, C:0.04, G:0.26, T:0.36
Consensus pattern (30 bp):
AAAATGGAATTTTTGGAAGTTTCGGGGTCA
Found at i:31229861 original size:59 final size:59
Alignment explanation
Indices: 31229721--31230056 Score: 392
Period size: 59 Copynumber: 5.7 Consensus size: 59
31229711 AAAATGGTAA
*
31229721 TTTTGAGAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTC-AGGGGC-AAAATGTAATT
1 TTTTGA-AGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGA-GGGCAAAAATGTAATT
* * * * *
31229780 TTTGGAAGTGTCGGGGTTAAAAATGAAATTTTTGGAAGTTCGAGAGCAAAAATGTAATT
1 TTTTGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATT
* * * *
31229839 TTTTGAAGTTTCGAGGTAAAAAATGGAATTTTTGGAAGTTTGAGGGCAAAAATGTATTT
1 TTTTGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATT
* * *
31229898 TTTTGAAGTTTTGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGTAAAATTGTAATT
1 TTTTGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATT
** * * * *
31229957 TTTTGAAGTTTCAAGGTTAAAAATGGAATTTTTGGAAGTTTGGGGGTAAAAATGTAATT
1 TTTTGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATT
** **
31230016 TTAGAGAAGTTT-GAGGGTC-AAAATACAATTTTTGGATAGTT
1 TT-TTGAAGTTTCG-GGGTCAAAAATGGAATTTTTGGA-AGTT
31230057 TAGGGACCTT
Statistics
Matches: 237, Mismatches: 35, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
58 34 0.14
59 189 0.80
60 14 0.06
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (59 bp):
TTTTGAAGTTTCGGGGTCAAAAATGGAATTTTTGGAAGTTCGAGGGCAAAAATGTAATT
Found at i:31231243 original size:21 final size:22
Alignment explanation
Indices: 31231194--31231257 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
31231184 TTTTAGTTTC
*
31231194 TTTTTATT-ATATTATTACTAA
1 TTTTTATTAATATTATTAATAA
*
31231215 TGTTTTATTAATAATATTAAT-A
1 T-TTTTATTAATATTATTAATAA
31231237 TTTTTATTAATACTTATTAAT
1 TTTTTATTAATA-TTATTAAT
31231258 GCTATTTACT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 12 0.32
22 16 0.43
23 9 0.24
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTTTATTAATATTATTAATAA
Found at i:31231304 original size:13 final size:12
Alignment explanation
Indices: 31231276--31231333 Score: 57
Period size: 13 Copynumber: 4.8 Consensus size: 12
31231266 CTGCTAACAT
*
31231276 TTATTATTACTA
1 TTATTATTAATA
*
31231288 TTATTACT-A-A
1 TTATTATTAATA
31231298 TTATTATTAATA
1 TTATTATTAATA
31231310 TTAATTATTAATA
1 TT-ATTATTAATA
*
31231323 GGTATTATTAA
1 -TTATTATTAA
31231334 AGTCATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 8 0.21
11 1 0.03
12 10 0.26
13 18 0.47
14 1 0.03
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.53
Consensus pattern (12 bp):
TTATTATTAATA
Found at i:31231305 original size:16 final size:16
Alignment explanation
Indices: 31231281--31231319 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
31231271 AACATTTATT
* *
31231281 ATTACTATTATTACTA
1 ATTATTATTAATACTA
*
31231297 ATTATTATTAATATTA
1 ATTATTATTAATACTA
31231313 ATTATTA
1 ATTATTA
31231320 ATAGGTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTATTATTAATACTA
Found at i:31232084 original size:17 final size:16
Alignment explanation
Indices: 31232058--31232106 Score: 62
Period size: 17 Copynumber: 3.0 Consensus size: 16
31232048 ATTTTATATT
*
31232058 TTTATATTAAATTTAA
1 TTTATTTTAAATTTAA
31232074 TATTATTTTAAATTTAA
1 T-TTATTTTAAATTTAA
* *
31232091 TTAAATTTAAATTTAA
1 TTTATTTTAAATTTAA
31232107 AGTAAATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTATTTTAAATTTAA
Found at i:31232089 original size:6 final size:6
Alignment explanation
Indices: 31232080--31232183 Score: 87
Period size: 6 Copynumber: 17.8 Consensus size: 6
31232070 TTAATATTAT
* *
31232080 TTTAAA TTT-AA -TTAAA TTTAAA TTTAAA -GTAAA TTTAAA TAAGTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA
* *
31232127 TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA ATT-AA TTTAAA ATT-AA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
31232172 TTTAAA CTTTAA
1 TTTAAA -TTTAA
31232184 TTAAAAATCA
Statistics
Matches: 79, Mismatches: 8, Indels: 21
0.73 0.07 0.19
Matches are distributed among these distances:
4 3 0.04
5 19 0.24
6 46 0.58
7 6 0.08
8 5 0.06
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:31232103 original size:11 final size:11
Alignment explanation
Indices: 31232080--31232188 Score: 68
Period size: 11 Copynumber: 10.0 Consensus size: 11
31232070 TTAATATTAT
*
31232080 TTTAAATTTAA
1 TTTAAATTAAA
31232091 -TTAAATTTAAA
1 TTTAAA-TTAAA
*
31232102 TTTAAAGTAAA
1 TTTAAATTAAA
31232113 TTTAAA-T-AA
1 TTTAAATTAAA
*
31232122 -GTAAATTTAAA
1 TTTAAA-TTAAA
31232133 TTTAAGA-TAAA
1 TTTAA-ATTAAA
31232144 TTTAAATTTAAA
1 TTTAAA-TTAAA
* *
31232156 ATTAATTTAAA
1 TTTAAATTAAA
* *
31232167 ATTAATTTAAA
1 TTTAAATTAAA
31232178 CTTT-AATTAAA
1 -TTTAAATTAAA
31232189 AATCAAAAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
8 4 0.05
9 2 0.03
10 8 0.10
11 47 0.59
12 18 0.22
13 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (11 bp):
TTTAAATTAAA
Found at i:31232112 original size:17 final size:16
Alignment explanation
Indices: 31232080--31232154 Score: 109
Period size: 17 Copynumber: 4.7 Consensus size: 16
31232070 TTAATATTAT
*
31232080 TTTAAATTTAATTAAA
1 TTTAAATTTAAGTAAA
31232096 TTTAAATTTAAAGTAAA
1 TTTAAATTT-AAGTAAA
31232113 TTTAAA--TAAGTAAA
1 TTTAAATTTAAGTAAA
31232127 TTTAAATTTAAGATAAA
1 TTTAAATTTAAG-TAAA
31232144 TTTAAATTTAA
1 TTTAAATTTAA
31232155 AATTAATTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
14 13 0.24
15 1 0.02
16 13 0.24
17 27 0.50
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (16 bp):
TTTAAATTTAAGTAAA
Found at i:31232130 original size:31 final size:31
Alignment explanation
Indices: 31232064--31232150 Score: 104
Period size: 31 Copynumber: 2.7 Consensus size: 31
31232054 TATTTTTATA
* * * *
31232064 TTAAATTTAATATTATTTTAAATTTAATTAAAT
1 TTAAATTTAAGATAAATTTAAA--TAAGTAAAT
31232097 TTAAATTTAA-AGTAAATTTAAATAAGTAAAT
1 TTAAATTTAAGA-TAAATTTAAATAAGTAAAT
31232128 TTAAATTTAAGATAAATTTAAAT
1 TTAAATTTAAGATAAATTTAAAT
31232151 TTAAAATTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
31 29 0.59
32 2 0.04
33 18 0.37
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (31 bp):
TTAAATTTAAGATAAATTTAAATAAGTAAAT
Found at i:31232162 original size:17 final size:17
Alignment explanation
Indices: 31232064--31232171 Score: 107
Period size: 17 Copynumber: 6.6 Consensus size: 17
31232054 TATTTTTATA
* * *
31232064 TTAAATTTAATATTATT
1 TTAAATTTAAAATAAAT
*
31232081 TTAAATTT-AATTAAAT
1 TTAAATTTAAAATAAAT
*
31232097 TTAAATTTAAAGTAAAT
1 TTAAATTTAAAATAAAT
*
31232114 TTAAA--T-AAGTAAAT
1 TTAAATTTAAAATAAAT
*
31232128 TTAAATTTAAGATAAAT
1 TTAAATTTAAAATAAAT
*
31232145 TTAAATTTAAAATTAAT
1 TTAAATTTAAAATAAAT
*
31232162 TTAAAATTAA
1 TTAAATTTAA
31232172 TTTAAACTTT
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
14 13 0.17
15 1 0.01
16 13 0.17
17 50 0.65
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTTAAAATAAAT
Found at i:31232190 original size:23 final size:22
Alignment explanation
Indices: 31232148--31232191 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
31232138 GATAAATTTA
*
31232148 AATTTAAAATTAATTTAAAATT
1 AATTTAAAATTAATTAAAAATT
*
31232170 AATTTAAACTTTAATTAAAAAT
1 AATTTAAA-ATTAATTAAAAAT
31232192 CAAAAGCCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTTAAAATTAATTAAAAATT
Found at i:31233190 original size:21 final size:21
Alignment explanation
Indices: 31233166--31233331 Score: 170
Period size: 21 Copynumber: 7.3 Consensus size: 21
31233156 AGCGTCTCTA
31233166 TCTCCAATCTCAGCTTCTCAT
1 TCTCCAATCTCAGCTTCTCAT
*
31233187 TCTCCAATCTCAGCTTCTCGT
1 TCTCCAATCTCAGCTTCTCAT
*
31233208 TCTCCAATCTCGGCTTCTCATTCT
1 TCTCCAATCTCAGCTTCTCA---T
* *
31233232 CTAACTCCAATCTAAGCTTCTCGTT
1 -T--CTCCAATCTCAGCTTCTC-AT
31233257 CTCCGACTCCAATCTCAGCTTCTCAT
1 -T----CTCCAATCTCAGCTTCTCAT
*
31233283 TCTCCAATCTCAGCTTCTCGT
1 TCTCCAATCTCAGCTTCTCAT
*
31233304 TCTCCAATCTCATCTTCTCAT
1 TCTCCAATCTCAGCTTCTCAT
31233325 TCTCCAA
1 TCTCCAA
31233332 CTCCAATCTC
Statistics
Matches: 124, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
21 83 0.67
24 1 0.01
25 5 0.04
26 1 0.01
27 34 0.27
ACGTcount: A:0.18, C:0.38, G:0.07, T:0.37
Consensus pattern (21 bp):
TCTCCAATCTCAGCTTCTCAT
Found at i:31233210 original size:27 final size:26
Alignment explanation
Indices: 31233180--31233375 Score: 100
Period size: 27 Copynumber: 8.0 Consensus size: 26
31233170 CAATCTCAGC
31233180 TTCTCATTCTCCAATCTCAGCTTCTCG
1 TTCTC-TTCTCCAATCTCAGCTTCTCG
* *
31233207 -----TTCTCCAATCTCGGCTTCTCA
1 TTCTCTTCTCCAATCTCAGCTTCTCG
* *
31233228 TTCTCTAACTCCAATCTAAGCTTCTCG
1 TTCTCT-TCTCCAATCTCAGCTTCTCG
**
31233255 TTCTCCGACTCCAATCTCAGC-T-TC-
1 TTCT-CTTCTCCAATCTCAGCTTCTCG
*
31233279 -TC-ATTCTCCAATCTCAGCTTCTCG
1 TTCTCTTCTCCAATCTCAGCTTCTCG
* *
31233303 -----TTCTCCAATCTCATCTTCTCA
1 TTCTCTTCTCCAATCTCAGCTTCTCG
** * * *
31233324 TTCTCCAACTCCAATCTCAGCCTCGCA
1 TTCT-CTTCTCCAATCTCAGCTTCTCG
*
31233351 TTCTCCTTCTCCAATC-CATCTTCTC
1 TTCT-CTTCTCCAATCTCAGCTTCTC
31233376 TGTCGATCGT
Statistics
Matches: 130, Mismatches: 23, Indels: 33
0.70 0.12 0.18
Matches are distributed among these distances:
21 51 0.39
22 1 0.01
23 4 0.03
25 2 0.02
26 8 0.06
27 63 0.48
28 1 0.01
ACGTcount: A:0.17, C:0.39, G:0.06, T:0.37
Consensus pattern (26 bp):
TTCTCTTCTCCAATCTCAGCTTCTCG
Found at i:31233225 original size:42 final size:42
Alignment explanation
Indices: 31233166--31233331 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
31233156 AGCGTCTCTA
31233166 TCTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGT
1 TCTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGT
* *
31233208 TCTCCAATCTCGGCTTCTCATTCTCTAACTCCAATCTAAGCTTCTCGTT
1 TCTCCAATCTCAGCTTCTCA---T-T--CTCCAATCTCAGCTTCTCG-T
31233257 CTCCGACTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGT
1 -T----CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGT
*
31233304 TCTCCAATCTCATCTTCTCATTCTCCAA
1 TCTCCAATCTCAGCTTCTCATTCTCCAA
31233332 CTCCAATCTC
Statistics
Matches: 107, Mismatches: 5, Indels: 24
0.79 0.04 0.18
Matches are distributed among these distances:
42 45 0.42
45 1 0.01
46 2 0.02
47 1 0.01
48 36 0.34
49 1 0.01
50 2 0.02
51 1 0.01
54 18 0.17
ACGTcount: A:0.18, C:0.38, G:0.07, T:0.37
Consensus pattern (42 bp):
TCTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGT
Found at i:31233324 original size:96 final size:96
Alignment explanation
Indices: 31233167--31233375 Score: 321
Period size: 96 Copynumber: 2.2 Consensus size: 96
31233157 GCGTCTCTAT
*
31233167 CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGTTCTCCAATCTCGGCTTCTCATTCT
1 CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGTTCTCCAATCTCAGCTTCTCATTCT
* * * *
31233232 CTAACTCCAATCTAAGCTTCTCGTTCTCCGA
66 CCAACTCCAATCTAAGCCTCGCATTCTCCGA
*
31233263 CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGTTCTCCAATCTCATCTTCTCATTCT
1 CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGTTCTCCAATCTCAGCTTCTCATTCT
* **
31233328 CCAACTCCAATCTCAGCCTCGCATTCTCCTT
66 CCAACTCCAATCTAAGCCTCGCATTCTCCGA
*
31233359 CTCCAATC-CATCTTCTC
1 CTCCAATCTCAGCTTCTC
31233376 TGTCGATCGT
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
95 8 0.08
96 95 0.92
ACGTcount: A:0.18, C:0.40, G:0.06, T:0.36
Consensus pattern (96 bp):
CTCCAATCTCAGCTTCTCATTCTCCAATCTCAGCTTCTCGTTCTCCAATCTCAGCTTCTCATTCT
CCAACTCCAATCTAAGCCTCGCATTCTCCGA
Found at i:31233356 original size:48 final size:46
Alignment explanation
Indices: 31233188--31233344 Score: 183
Period size: 48 Copynumber: 3.3 Consensus size: 46
31233178 GCTTCTCATT
*
31233188 CTCCAATCTCAGCTTCTCGTTCTCCAATCTCGGCTTCTCATTCTCTAA
1 CTCCAATCTCAGCTTCTCGTTCTCCAATCTC--CTTCTCATTCTCCAA
* * * *
31233236 CTCCAATCTAAGCTTCTCGTTCTCCGA-CTCCAATCTCAGCTTCT-CATT
1 CTCCAATCTCAGCTTCTCGTTCTCCAATCTCC-TTCTCA--TTCTCCA-A
31233284 CTCCAATCTCAGCTTCTCGTTCTCCAATCTCATCTTCTCATTCTCCAA
1 CTCCAATCTCAGCTTCTCGTTCTCCAATCTC--CTTCTCATTCTCCAA
31233332 CTCCAATCTCAGC
1 CTCCAATCTCAGC
31233345 CTCGCATTCT
Statistics
Matches: 92, Mismatches: 9, Indels: 16
0.79 0.08 0.14
Matches are distributed among these distances:
45 1 0.01
46 5 0.05
47 4 0.04
48 71 0.77
49 5 0.05
50 5 0.05
51 1 0.01
ACGTcount: A:0.18, C:0.39, G:0.07, T:0.36
Consensus pattern (46 bp):
CTCCAATCTCAGCTTCTCGTTCTCCAATCTCCTTCTCATTCTCCAA
Found at i:31235770 original size:31 final size:32
Alignment explanation
Indices: 31235727--31235789 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
31235717 GATAAATATC
*
31235727 TCAATTTGATTTGTTTACAATT-AAATTGATTT
1 TCAATTTGATTTGATT-CAATTCAAATTGATTT
*
31235759 TCAA-TTGATTTGATTCTATTCAAATTGATTT
1 TCAATTTGATTTGATTCAATTCAAATTGATTT
31235790 AAAGGCTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 4 0.14
31 20 0.71
32 4 0.14
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (32 bp):
TCAATTTGATTTGATTCAATTCAAATTGATTT
Found at i:31235771 original size:16 final size:16
Alignment explanation
Indices: 31235727--31235773 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
31235717 GATAAATATC
31235727 TCAATTTGATTTG-TTT
1 TCAA-TTGATTTGATTT
* * *
31235743 ACAATTAAATTGATTT
1 TCAATTGATTTGATTT
31235759 TCAATTGATTTGATT
1 TCAATTGATTTGATT
31235774 CTATTCAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
15 6 0.25
16 18 0.75
ACGTcount: A:0.30, C:0.06, G:0.11, T:0.53
Consensus pattern (16 bp):
TCAATTGATTTGATTT
Found at i:31237341 original size:20 final size:20
Alignment explanation
Indices: 31237318--31237363 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
31237308 AAGTTTATAG
31237318 ATTTTATTT-TTTTCATTTTT
1 ATTTTATTTATTTT-ATTTTT
31237338 ATTTTATTTCATTTTATTTTT
1 ATTTTATTT-ATTTTATTTTT
31237359 -TTTTA
1 ATTTTA
31237364 ATTCCAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.58
21 6 0.25
22 4 0.17
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.78
Consensus pattern (20 bp):
ATTTTATTTATTTTATTTTT
Found at i:31237349 original size:16 final size:14
Alignment explanation
Indices: 31237318--31237360 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 14
31237308 AAGTTTATAG
31237318 ATTTTATTTTTTTC
1 ATTTTATTTTTTTC
31237332 ATTTTTATTTTATTTC
1 A-TTTTATTTT-TTTC
31237348 ATTTTATTTTTTT
1 ATTTTATTTTTTT
31237361 TTAATTCCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTTATTTTTTTC
Found at i:31237374 original size:21 final size:21
Alignment explanation
Indices: 31237332--31237375 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
31237322 TATTTTTTTC
* *
31237332 ATTTTTATTTTATTTCATTTT
1 ATTTTTATTTTATTCCAGTTT
31237353 ATTTTT-TTTTAATTCCAGTTT
1 ATTTTTATTTT-ATTCCAGTTT
31237374 AT
1 AT
31237376 GACTTGAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (21 bp):
ATTTTTATTTTATTCCAGTTT
Found at i:31238958 original size:25 final size:25
Alignment explanation
Indices: 31238930--31238994 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
31238920 ATTTAACTCA
31238930 TACGAGCCCAGACAA-AATTAGCTCT
1 TACGAGCCCAGA-AAGAATTAGCTCT
*
31238955 TACGAGCCTAGAAAGAATTAGCTCT
1 TACGAGCCCAGAAAGAATTAGCTCT
*
31238980 TACGAGCCCAAAAAG
1 TACGAGCCCAGAAAG
31238995 GTTAACTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 2 0.06
25 34 0.94
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.18
Consensus pattern (25 bp):
TACGAGCCCAGAAAGAATTAGCTCT
Done.