Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 115 of 163
Found at i:32230244 original size:15 final size:15
Alignment explanation
Indices: 32230218--32230259 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
32230208 CACCTCAAGT
32230218 CTTTACACATTTA-TC
1 CTTTA-ACATTTAGTC
32230233 ACTTTAACATTTTAGTC
1 -CTTTAACA-TTTAGTC
32230250 CTTTAACATT
1 CTTTAACATT
32230260 AAAATTAGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.21
16 17 0.71
17 2 0.08
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (15 bp):
CTTTAACATTTAGTC
Found at i:32244626 original size:25 final size:26
Alignment explanation
Indices: 32244579--32244650 Score: 65
Period size: 28 Copynumber: 2.7 Consensus size: 26
32244569 CATTTTTATA
* * * *
32244579 ATTTTTATAAAATTAAATTAAATTAA-
1 ATTTTTATTAATTTAAA-AAAATCAAT
*
32244605 ATTTTTATTATTTTAAAAAAATCAATTT
1 ATTTTTATTAATTTAAAAAAATCAA--T
32244633 ATTTTTATTAATTTAAAA
1 ATTTTTATTAATTTAAAA
32244651 TTTTAAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
25 6 0.16
26 14 0.38
28 17 0.46
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (26 bp):
ATTTTTATTAATTTAAAAAAATCAAT
Found at i:32245240 original size:40 final size:40
Alignment explanation
Indices: 32245185--32245298 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
32245175 CTTGGACAAA
32245185 AAATGCCGCAAAAGGTAAAGCAATAGTGGCGTTTTTCCAT
1 AAATGCCGCAAAAGGTAAAGCAATAGTGGCGTTTTTCCAT
* **
32245225 AAATGCCGCAAAAGGTAAAGCAATAGCGGCACTTTTCCAT
1 AAATGCCGCAAAAGGTAAAGCAATAGTGGCGTTTTTCCAT
* *
32245265 AAACGCTGCAAAAGGTAAAGCAATAGCT-GCGTTT
1 AAATGCCGCAAAAGGTAAAGCAATAG-TGGCGTTT
32245299 AAAGGAAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (40 bp):
AAATGCCGCAAAAGGTAAAGCAATAGTGGCGTTTTTCCAT
Found at i:32245359 original size:41 final size:41
Alignment explanation
Indices: 32245312--32245535 Score: 245
Period size: 41 Copynumber: 5.7 Consensus size: 41
32245302 GGAAAAATAT
* *
32245312 CGCTAAAGGTCAGAGCATTAACGGCGTTTATGAGAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAGCGC
**
32245353 TACTAAAGGTCAGAGC---A-------TTATGGGAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAGCGC
* * *
32245384 CGCTAAAGGTCACAACATTAGCGGCGTTTATGAGAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAGCGC
* *
32245425 CGCTAAAGGTAAGAGCATTAGTGGCGTTTATGGGAAAGCGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAGCGC
**
32245466 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAAATGC
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGG-AAAGCGC
* *
32245508 CGCTAAAGGTTA-AGCAATAGCGGCGTTT
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTT
32245536 TTCCATAAGC
Statistics
Matches: 153, Mismatches: 19, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
31 25 0.16
34 1 0.01
38 1 0.01
41 110 0.72
42 16 0.10
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (41 bp):
CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAGCGC
Found at i:32245393 original size:72 final size:74
Alignment explanation
Indices: 32245312--32245502 Score: 233
Period size: 72 Copynumber: 2.5 Consensus size: 74
32245302 GGAAAAATAT
* * *
32245312 CGCTAAAGGTCAGAGCATTAACGGCGTTTATGAGAAAGCGCTACTAAAGGTCAGAGC-A-TTATG
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGAGAAAGCGCCACTAAAGGTAAGAGCTAGTTATG
32245375 GGAAAGCGC
66 GGAAAGCGC
* * *
32245384 CGCTAAAGGTCACAACATTAGCGGCGTTTATGAGAAAGCGCCGCTAAAGGTAAGAGCATTAGTGG
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGAGAAAGCGCCACTAAAGGTAAGAGC--TA----
32245449 CGTTTATGGGAAAGCGC
60 -G-TTATGGGAAAGCGC
*
32245466 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAA
1 CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGAGAAA
32245503 AATGCCGCTA
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
72 51 0.51
75 1 0.01
82 48 0.48
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (74 bp):
CGCTAAAGGTCAGAGCATTAGCGGCGTTTATGAGAAAGCGCCACTAAAGGTAAGAGCTAGTTATG
GGAAAGCGC
Found at i:32245403 original size:31 final size:31
Alignment explanation
Indices: 32245339--32245403 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
32245329 TTAACGGCGT
* * *
32245339 TTATGAGAAAGCGCTACTAAAGGTCAGAGCA
1 TTATGAGAAAGCGCCACTAAAGGTCACAACA
* *
32245370 TTATGGGAAAGCGCCGCTAAAGGTCACAACA
1 TTATGAGAAAGCGCCACTAAAGGTCACAACA
32245401 TTA
1 TTA
32245404 GCGGCGTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (31 bp):
TTATGAGAAAGCGCCACTAAAGGTCACAACA
Found at i:32245546 original size:82 final size:82
Alignment explanation
Indices: 32245377--32245553 Score: 214
Period size: 82 Copynumber: 2.2 Consensus size: 82
32245367 GCATTATGGG
*
32245377 AAAGCGCCGCTAAAGGTCACAACATTAGCGGCGTTTATGAGAAAGCGCCGCTAAAGGTAAGAGCA
1 AAAGCGCCGCTAAAGGTCACAACATTAGCGGCGTTTATGAGAAAACGCCGCTAAAGGTAAGAGCA
* * **
32245442 TTAGTGGCGTTTATGGG
66 ATAGCGGCGTTTATGCC
* * * * *
32245459 AAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGGAAAAATGCCGCTAAAGGTTA-AGC
1 AAAGCGCCGCTAAAGGTCACAACATTAGCGGCGTTTATGAG-AAAACGCCGCTAAAGGTAAGAGC
*
32245523 AATAGCGGCGTTT-TTCC
65 AATAGCGGCGTTTATGCC
*
32245540 ATAAGCGCCACTAA
1 A-AAGCGCCGCTAA
32245554 TTTATTTAAA
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 2 0.02
82 63 0.78
83 16 0.20
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.21
Consensus pattern (82 bp):
AAAGCGCCGCTAAAGGTCACAACATTAGCGGCGTTTATGAGAAAACGCCGCTAAAGGTAAGAGCA
ATAGCGGCGTTTATGCC
Found at i:32248014 original size:43 final size:42
Alignment explanation
Indices: 32247953--32248225 Score: 260
Period size: 43 Copynumber: 6.4 Consensus size: 42
32247943 CGTTTACGGG
* * * *
32247953 GCTAAAGACCATGTTCTTTAGCGGTGTTTGTGAGGAACGCGCC
1 GCTAAAAACCATGTTCTTTAGCGGCGTTTGTG-GGAAAGCACC
* * * **
32247996 GCTAAAAATCATGTTCTTTAACGGCGTTTGTGTTGAAAGTGCC
1 GCTAAAAACCATGTTCTTTAGCGGCGTTTGTG-GGAAAGCACC
* * * * *
32248039 GCTAAAGACAATATTCTTTAACGGTGTTTGTGGGAAAAGCACC
1 GCTAAAAACCATGTTCTTTAGCGGCGTTTGTGGG-AAAGCACC
* * * *
32248082 GCCAAATACCATGTTCTTTAGCGGCGTTTGCGAGGAAAGCGCC
1 GCTAAAAACCATGTTCTTTAGCGGCGTTTGTG-GGAAAGCACC
* * *
32248125 GC-AAAAGACCATGTTCTTTAGTGGCATTTGTGGGGAAGCACC
1 GCTAAAA-ACCATGTTCTTTAGCGGCGTTTGTGGGAAAGCACC
* * * *
32248167 GCTAAAAATCATGTTTTTTAGCAGCATTTGTGGGAAAGCACC
1 GCTAAAAACCATGTTCTTTAGCGGCGTTTGTGGGAAAGCACC
*
32248209 GCTAAAGACCATGTTCT
1 GCTAAAAACCATGTTCT
32248226 ATAACGGTAT
Statistics
Matches: 188, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
42 58 0.31
43 128 0.68
44 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
GCTAAAAACCATGTTCTTTAGCGGCGTTTGTGGGAAAGCACC
Found at i:32248098 original size:86 final size:84
Alignment explanation
Indices: 32247953--32248233 Score: 319
Period size: 86 Copynumber: 3.3 Consensus size: 84
32247943 CGTTTACGGG
* * * *
32247953 GCTAAAGACCATGTTCTTTAGCGGTGTTTGTGAGGAACGCGCCGCTAAAAATCATGTTCTTTAAC
1 GCTAAAGACCATGTTCTTTAACGGTGTTTGTG-GGAAAGCACCGCTAAAAATCATGTTCTTTAGC
* *
32248018 GGCGTTTGTGTTGAAAGTGCC
65 GGCGTTTGTG-GGAAAGCGCC
* * * * *
32248039 GCTAAAGACAATATTCTTTAACGGTGTTTGTGGGAAAAGCACCGCCAAATACCATGTTCTTTAGC
1 GCTAAAGACCATGTTCTTTAACGGTGTTTGTGGG-AAAGCACCGCTAAAAATCATGTTCTTTAGC
*
32248104 GGCGTTTGCGAGGAAAGCGCC
65 GGCGTTTGTG-GGAAAGCGCC
* ** ** * * *
32248125 GCAAAAGACCATGTTCTTTAGTGGCATTTGTGGGGAAGCACCGCTAAAAATCATGTTTTTTAGCA
1 GCTAAAGACCATGTTCTTTAACGGTGTTTGTGGGAAAGCACCGCTAAAAATCATGTTCTTTAGCG
* *
32248190 GCATTTGTGGGAAAGCACC
66 GCGTTTGTGGGAAAGCGCC
*
32248209 GCTAAAGACCATGTTCTATAACGGT
1 GCTAAAGACCATGTTCTTTAACGGT
32248234 ATTTTTTCTT
Statistics
Matches: 160, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
84 29 0.18
85 34 0.21
86 97 0.61
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (84 bp):
GCTAAAGACCATGTTCTTTAACGGTGTTTGTGGGAAAGCACCGCTAAAAATCATGTTCTTTAGCG
GCGTTTGTGGGAAAGCGCC
Found at i:32261595 original size:18 final size:18
Alignment explanation
Indices: 32261569--32261647 Score: 97
Period size: 18 Copynumber: 4.4 Consensus size: 18
32261559 CGAAAGAAAT
* *
32261569 AGCACACTGGCTCATTTG
1 AGCATACTGGCTCGTTTG
32261587 AGCATACTGGCTC-TTTAG
1 AGCATACTGGCTCGTTT-G
* *
32261605 AGCATATTGGCTCGTTCG
1 AGCATACTGGCTCGTTTG
*
32261623 AGCATATTGGCTCGTTTG
1 AGCATACTGGCTCGTTTG
32261641 AGCATAC
1 AGCATAC
32261648 AGACTTTTAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
17 3 0.06
18 49 0.91
19 2 0.04
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.32
Consensus pattern (18 bp):
AGCATACTGGCTCGTTTG
Found at i:32261747 original size:44 final size:44
Alignment explanation
Indices: 32261684--32261773 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
32261674 GCAAGGACTA
*
32261684 TTGAATATTGTTAATGGAAGGAATGGAAACGATGGAACTCATCC
1 TTGAATATTATTAATGGAAGGAATGGAAACGATGGAACTCATCC
* *
32261728 TTGAATATTATTGATGGAAGGAGTGGAAACGATGGAACTCATCC
1 TTGAATATTATTAATGGAAGGAATGGAAACGATGGAACTCATCC
32261772 TT
1 TT
32261774 TTCTCGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (44 bp):
TTGAATATTATTAATGGAAGGAATGGAAACGATGGAACTCATCC
Found at i:32265906 original size:24 final size:26
Alignment explanation
Indices: 32265869--32265923 Score: 87
Period size: 24 Copynumber: 2.2 Consensus size: 26
32265859 TAAATTTTAT
*
32265869 AATAATATTATATTAATGTTAAATAA
1 AATAATATTATATTAATATTAAATAA
32265895 AATAAT-TT-TATTAATATTAAATAA
1 AATAATATTATATTAATATTAAATAA
32265919 AATAA
1 AATAA
32265924 AGAGTTTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 20 0.71
25 2 0.07
26 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (26 bp):
AATAATATTATATTAATATTAAATAA
Found at i:32266121 original size:12 final size:12
Alignment explanation
Indices: 32266104--32266128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32266094 ATTGAGCCCC
32266104 TAAAAACTAAAT
1 TAAAAACTAAAT
32266116 TAAAAACTAAAT
1 TAAAAACTAAAT
32266128 T
1 T
32266129 TTTTTCGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TAAAAACTAAAT
Found at i:32267029 original size:25 final size:24
Alignment explanation
Indices: 32266996--32267061 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 24
32266986 GGAGAGATTT
32266996 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
32267020 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATATTAATATAA
* *
32267045 -AATTTTAATTTATTATT
1 TTATTTT-ATTTAATATT
32267062 TTATTTTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
23 3 0.08
24 15 0.39
25 20 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:32272001 original size:22 final size:22
Alignment explanation
Indices: 32271976--32272021 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32271966 ATACATAACT
*
32271976 AATTTCAAAAAATATAACAATA
1 AATTTCAAAAAATATAAAAATA
* *
32271998 AATTTTAAAATATATAAAAATA
1 AATTTCAAAAAATATAAAAATA
32272020 AA
1 AA
32272022 AAATATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTTCAAAAAATATAAAAATA
Found at i:32274540 original size:12 final size:12
Alignment explanation
Indices: 32274499--32274541 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
32274489 ACATCCAAAC
32274499 AACAAAAATAAT
1 AACAAAAATAAT
* * *
32274511 AACCAAAACAGT
1 AACAAAAATAAT
*
32274523 AGCAAAAATAAT
1 AACAAAAATAAT
32274535 AACAAAA
1 AACAAAA
32274542 TAACATTAAA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.70, C:0.14, G:0.05, T:0.12
Consensus pattern (12 bp):
AACAAAAATAAT
Found at i:32274564 original size:21 final size:21
Alignment explanation
Indices: 32274538--32274620 Score: 67
Period size: 21 Copynumber: 3.7 Consensus size: 21
32274528 AAATAATAAC
**
32274538 AAAATAACATTAAAAACAACA
1 AAAATAACAACAAAAACAACA
* *
32274559 AAAATAGCAACAAAAACAATA
1 AAAATAACAACAAAAACAACA
* *
32274580 AAAAAAATAACAGCAAAACAACA
1 AAAATAACAACA--AAAACAACA
32274603 TGAAAATAACAATCAAAA
1 --AAAATAACAA-CAAAA
32274621 CAGTAAAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
21 26 0.55
23 8 0.17
24 3 0.06
25 8 0.17
26 2 0.04
ACGTcount: A:0.71, C:0.14, G:0.04, T:0.11
Consensus pattern (21 bp):
AAAATAACAACAAAAACAACA
Found at i:32274576 original size:56 final size:56
Alignment explanation
Indices: 32274461--32274608 Score: 147
Period size: 56 Copynumber: 2.7 Consensus size: 56
32274451 AAAAACAGTG
* * ** * *
32274461 AAACAATAGTAAAAACACATAA-AAAATAACA-TCCAAACAACAAAAATAATAACCA
1 AAACAATAGAAAAAATA-ATAACAAAATAACATTAAAAACAACAAAAATAACAACAA
* * *
32274516 AAACAGTAGCAAAAATAATAACAAAATAACATTAAAAACAACAAAAATAGCAACAA
1 AAACAATAGAAAAAATAATAACAAAATAACATTAAAAACAACAAAAATAACAACAA
* * * * *
32274572 AAACAATAAAAAAAATAACAGCAAAACAACATGAAAA
1 AAACAATAGAAAAAATAATAACAAAATAACATTAAAA
32274609 TAACAATCAA
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
54 4 0.05
55 23 0.30
56 49 0.64
ACGTcount: A:0.69, C:0.16, G:0.04, T:0.11
Consensus pattern (56 bp):
AAACAATAGAAAAAATAATAACAAAATAACATTAAAAACAACAAAAATAACAACAA
Found at i:32274597 original size:23 final size:23
Alignment explanation
Indices: 32274558--32274644 Score: 77
Period size: 24 Copynumber: 3.7 Consensus size: 23
32274548 TAAAAACAAC
*
32274558 AAAAATAGCAACAAAAACAATAAA
1 AAAAATAACAAC-AAAACAATAAA
* * *
32274582 AAAAATAACAGCAAAACAA-CAT
1 AAAAATAACAACAAAACAATAAA
* *
32274604 GAAAATAACAATCAAAACAGTAAA
1 AAAAATAACAA-CAAAACAATAAA
*
32274628 AAACAAAAACAACAAAA
1 AAA-AATAACAACAAAA
32274645 AAAAAGCAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
22 10 0.20
23 14 0.29
24 18 0.37
25 7 0.14
ACGTcount: A:0.72, C:0.15, G:0.05, T:0.08
Consensus pattern (23 bp):
AAAAATAACAACAAAACAATAAA
Found at i:32274628 original size:46 final size:45
Alignment explanation
Indices: 32274550--32274644 Score: 113
Period size: 46 Copynumber: 2.1 Consensus size: 45
32274540 AATAACATTA
* * *
32274550 AAAACAACAAAAATAGCAACAAAAACAATAAAAAA-AATAACAGC
1 AAAACAACAAAAATAACAACAAAAACAATAAAAAACAAAAACAAC
*
32274594 AAAACAACATGAAAATAACAATC-AAAACAGTAAAAAACAAAAACAAC
1 AAAACAACA--AAAATAACAA-CAAAAACAATAAAAAACAAAAACAAC
32274641 AAAA
1 AAAA
32274645 AAAAAGCAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
44 9 0.21
46 22 0.51
47 12 0.28
ACGTcount: A:0.73, C:0.16, G:0.04, T:0.07
Consensus pattern (45 bp):
AAAACAACAAAAATAACAACAAAAACAATAAAAAACAAAAACAAC
Found at i:32274660 original size:39 final size:39
Alignment explanation
Indices: 32274594--32274669 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
32274584 AAATAACAGC
* *
32274594 AAAACAACATGAAAATAACAATCAAAACAGTAAAAAACA
1 AAAACAACATAAAAAAAACAATCAAAACAGTAAAAAACA
*
32274633 AAAACAACA-AAAAAAAAGCAATTAAAACAGTAAAAAA
1 AAAACAACATAAAAAAAA-CAATCAAAACAGTAAAAAA
32274670 AACAGTACCA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 6 0.18
39 27 0.82
ACGTcount: A:0.72, C:0.13, G:0.05, T:0.09
Consensus pattern (39 bp):
AAAACAACATAAAAAAAACAATCAAAACAGTAAAAAACA
Found at i:32275387 original size:23 final size:22
Alignment explanation
Indices: 32275336--32275396 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
32275326 ACGAATATAT
* *
32275336 AAAAATA-CATAATTAATTTCA
1 AAAAATATAATAATAAATTTCA
*
32275357 AAAAATATAATAATAAATTTTA
1 AAAAATATAATAATAAATTTCA
*
32275379 AAAATATATAAAAATAAA
1 AAAA-ATATAATAATAAA
32275397 AAATATTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.21
22 15 0.44
23 12 0.35
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATATAATAATAAATTTCA
Found at i:32275519 original size:25 final size:28
Alignment explanation
Indices: 32275465--32275532 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 28
32275455 TTTTCAAAAA
* *
32275465 AAATAAATTTAAATTTTATATTAATGTT
1 AAATAAATATAAATTTTATATTAATATT
32275493 AAATAAATAT-AA-TTT-TATTAATATT
1 AAATAAATATAAATTTTATATTAATATT
*
32275518 AAATAAATAAAAATT
1 AAATAAATATAAATT
32275533 CTCCCACCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 18 0.51
26 5 0.14
27 3 0.09
28 9 0.26
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATAAATATAAATTTTATATTAATATT
Found at i:32277429 original size:20 final size:20
Alignment explanation
Indices: 32277351--32277435 Score: 66
Period size: 20 Copynumber: 4.2 Consensus size: 20
32277341 ACCTAGAGTT
* *
32277351 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACATGTTT-AAAATC
*
32277372 ATTTTGA-A-GTGTTAAAATG
1 ATTTTGACATGT-TTAAAATC
** * * *
32277391 ATTTTGATTTGGTTCAAATT
1 ATTTTGACATGTTTAAAATC
32277411 ATTTTGACATGTTTAAAATC
1 ATTTTGACATGTTTAAAATC
32277431 ATTTT
1 ATTTT
32277436 AACTTGATTT
Statistics
Matches: 49, Mismatches: 12, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
19 13 0.27
20 28 0.57
21 8 0.16
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (20 bp):
ATTTTGACATGTTTAAAATC
Found at i:32281599 original size:42 final size:39
Alignment explanation
Indices: 32281542--32281638 Score: 97
Period size: 38 Copynumber: 2.4 Consensus size: 39
32281532 CAAAAGGTAA
* *
32281542 AGCAATAGCGGCGTTTATAGGAAAAATGCAGCTAAAAGTCAG
1 AGCATTAGCAGCGTTT-TAGG-AAAA-GCAGCTAAAAGTCAG
* * ** *
32281584 AGCATTAGCTGCG-TTTAGGGAAAGTTGCTAAAGGTCAG
1 AGCATTAGCAGCGTTTTAGGAAAAGCAGCTAAAAGTCAG
32281622 AGCATTAGCAGCGTTTT
1 AGCATTAGCAGCGTTTT
32281639 TCCTATAAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 24 0.51
39 6 0.13
40 4 0.09
41 2 0.04
42 11 0.23
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (39 bp):
AGCATTAGCAGCGTTTTAGGAAAAGCAGCTAAAAGTCAG
Found at i:32281738 original size:41 final size:41
Alignment explanation
Indices: 32281676--32281877 Score: 244
Period size: 41 Copynumber: 4.9 Consensus size: 41
32281666 TTTTGTAGCA
* * ** *
32281676 TTTATGGAAAAGTGCTGCTAAAGGTCAGAGCATTAAAGGCG
1 TTTATGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCGACG
* * *
32281717 TTTATGGAAAAGCGCCACTAAAGGTTAGAGCATTAGCGACC
1 TTTATGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCGACG
* * *
32281758 CTTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCG
1 TTTATGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCGACG
* * *
32281799 TTTATGGAAAAGCGTCGCTAAAGGTTAGAGCATTAGCGACA
1 TTTATGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCGACG
* *
32281840 TTTATTGG-AAAGCGTCGCTAAAGGTCATAGCATTAGCG
1 TTTA-TGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
32281878 GCACTTTCTC
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 135 0.98
42 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (41 bp):
TTTATGGAAAAGCGCCGCTAAAGGTCAGAGCATTAGCGACG
Found at i:32281875 original size:82 final size:82
Alignment explanation
Indices: 32281677--32281879 Score: 291
Period size: 82 Copynumber: 2.5 Consensus size: 82
32281667 TTTGTAGCAT
* * * **
32281677 TTATGGAAAAGTGCTGCTAAAGGTCAGAGCATTAAAGGCGTTTATGGAAAAGCGCCACTAAAGGT
1 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCACTAAAGGT
*
32281742 TAGAGCATTAGCGACCC
66 TAGAGCATTAGCGACAC
* *
32281759 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGTCGCTAAAGGT
1 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCACTAAAGGT
*
32281824 TAGAGCATTAGCGACAT
66 TAGAGCATTAGCGACAC
* *
32281841 TTATTGGA-AAGCGTCGCTAAAGGTCATAGCATTAGCGGC
1 TTA-TGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGC
32281880 ACTTTCTCAT
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
82 105 0.96
83 4 0.04
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.23
Consensus pattern (82 bp):
TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCACTAAAGGT
TAGAGCATTAGCGACAC
Found at i:32281900 original size:41 final size:40
Alignment explanation
Indices: 32281673--32281905 Score: 180
Period size: 41 Copynumber: 5.7 Consensus size: 40
32281663 ACCTTTTGTA
* * * **
32281673 GCATTTATGGAAAAGTGCTGCTAAAGGTCAGAGCATTAAAG
1 GCATTTAT-CAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
* * * *
32281714 GCGTTTATGGAAAAGCGCCACTAAAGGTTAGAGCATTAGCG
1 GCATTTAT-CAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
* ** * *
32281755 ACCCTTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCG
1 GCATTTAT-CAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
* * * *
32281796 GCGTTTATGGAAAAGCGTCGCTAAAGGTTAGAGCATTAGCG
1 GCATTTAT-CAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
* ** * *
32281837 ACATTTATTGGAAAGCGTCGCTAAAGGTCATAGCATTAGCG
1 GCATTTA-TCAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
*
32281878 GCACTTTCTCATAAA-CGCCGCTAAAGGT
1 GCA-TTTATCA-AAAGCGCCGCTAAAGGT
32281906 TAAGCAATAG
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
41 153 0.96
42 7 0.04
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (40 bp):
GCATTTATCAAAAGCGCCGCTAAAGGTCAGAGCATTAGCG
Found at i:32281900 original size:82 final size:82
Alignment explanation
Indices: 32281677--32281911 Score: 271
Period size: 82 Copynumber: 2.9 Consensus size: 82
32281667 TTTGTAGCAT
* * * ** * * *
32281677 TTATGGAAAAGTGCTGCTAAAGGTCAGAGCATTAAAGGCGTTTATGGAAAAGCGCCACTAAAGGT
1 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCCTTTATGCAAAAGCGCCGCTAAAGGT
*
32281742 TAGAGCATTAGCGACCC
66 TAGAGCATTAGCGACAC
* * *
32281759 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGTCGCTAAAGGT
1 TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCCTTTATGCAAAAGCGCCGCTAAAGGT
*
32281824 TAGAGCATTAGCGACAT
66 TAGAGCATTAGCGACAC
* * *
32281841 TTATTGGA-AAGCGTCGCTAAAGGTCATAGCATTAGCGGCACTTTCT-CATAAA-CGCCGCTAAA
1 TTA-TGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGC-CTTTATGCA-AAAGCGCCGCTAAA
32281903 GGTTA-AGCA
63 GGTTAGAGCA
32281912 ATAGTGGCGT
Statistics
Matches: 135, Mismatches: 15, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
81 4 0.03
82 120 0.89
83 11 0.08
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (82 bp):
TTATGGAGAAGCGCCGCTAAAGGTCAGAGCATTAGCGGCCTTTATGCAAAAGCGCCGCTAAAGGT
TAGAGCATTAGCGACAC
Found at i:32284335 original size:21 final size:21
Alignment explanation
Indices: 32284282--32284322 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32284272 TACTTTCTTG
*
32284282 TTGCCT-T-TGCTTCTCTCGC
1 TTGCCTCTCTGCTTCCCTCGC
32284301 TTGCCTCTCTGCTTCCCTCGC
1 TTGCCTCTCTGCTTCCCTCGC
32284322 T
1 T
32284323 AATGCCTCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 1 0.05
21 12 0.63
ACGTcount: A:0.00, C:0.41, G:0.15, T:0.44
Consensus pattern (21 bp):
TTGCCTCTCTGCTTCCCTCGC
Found at i:32287913 original size:26 final size:26
Alignment explanation
Indices: 32287883--32287955 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 26
32287873 TTATGGAAAT
32287883 TATTTGGGTTGTTTTTAATAATTAAA
1 TATTTGGGTTGTTTTTAATAATTAAA
** * *
32287909 TATTT---TT-AATTAAACAATTAAA
1 TATTTGGGTTGTTTTTAATAATTAAA
32287931 TATTTGGGTTGTTTTTAATAATTAA
1 TATTTGGGTTGTTTTTAATAATTAA
32287956 TTAATTAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
22 16 0.46
23 2 0.06
25 2 0.06
26 15 0.43
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (26 bp):
TATTTGGGTTGTTTTTAATAATTAAA
Found at i:32287958 original size:4 final size:4
Alignment explanation
Indices: 32287945--32287973 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
32287935 TGGGTTGTTT
32287945 TTAA -TAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
32287974 GGGTTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:32287962 original size:34 final size:34
Alignment explanation
Indices: 32287915--32288028 Score: 147
Period size: 34 Copynumber: 3.2 Consensus size: 34
32287905 TAAATATTTT
*
32287915 TAATTAAACAATTAAATATTTGGGTTGTTTTTAA
1 TAATTAAATAATTAAATATTTGGGTTGTTTTTAA
* * *
32287949 TAATTAATTAATTAATTAATTAATTGGGTTGTTTTAAA
1 TAATT-A--AA-TAATTAAATATTTGGGTTGTTTTTAA
*
32287987 TAATTAAATAATTAAGTATTTGGGTTGTTTTTAA
1 TAATTAAATAATTAAATATTTGGGTTGTTTTTAA
32288021 TAATTAAA
1 TAATTAAA
32288029 ATTTTAATTA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
34 36 0.52
35 3 0.04
37 3 0.04
38 27 0.39
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.48
Consensus pattern (34 bp):
TAATTAAATAATTAAATATTTGGGTTGTTTTTAA
Found at i:32287966 original size:38 final size:38
Alignment explanation
Indices: 32287914--32288027 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 38
32287904 TTAAATATTT
*
32287914 TTAATTAAACAATTAAATATTTGGGTTGTTTTTAATAA
1 TTAATTAAATAATTAAATATTTGGGTTGTTTTTAATAA
* * *
32287952 TTAATTAATTAATTAATTAATTGGGTTG-TTTT-A-AA
1 TTAATTAAATAATTAAATATTTGGGTTGTTTTTAATAA
*
32287987 -TAATTAAATAATTAAGTATTTGGGTTGTTTTTAATAA
1 TTAATTAAATAATTAAATATTTGGGTTGTTTTTAATAA
32288024 TTAA
1 TTAA
32288028 AATTTTAATT
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
34 24 0.37
35 6 0.09
36 2 0.03
37 6 0.09
38 27 0.42
ACGTcount: A:0.39, C:0.01, G:0.11, T:0.49
Consensus pattern (38 bp):
TTAATTAAATAATTAAATATTTGGGTTGTTTTTAATAA
Found at i:32287997 original size:46 final size:45
Alignment explanation
Indices: 32287951--32288178 Score: 143
Period size: 46 Copynumber: 5.4 Consensus size: 45
32287941 GTTTTTAATA
32287951 ATTAATTAATTAATTAATTAATTGGGTTG-TTTT-A-AA-T--A-
1 ATTAATTAATTAATTAATTAATTGGGTTGTTTTTAATAATTAAAT
* *
32287989 ATT-A--AA-TAATTAAGTATTTGGGTTGTTTTTAATAATTAAAAT
1 ATTAATTAATTAATTAATTAATTGGGTTGTTTTTAATAATT-AAAT
* * * * ** ** * *
32288031 TTTAATTAAATAATCAAATAATT-AATAT-AATTAAATATTTAAAT
1 ATTAATTAATTAATTAATTAATTGGGT-TGTTTTTAATAATTAAAT
*
32288075 ATT--TTGAATT-A--AA-TATTTGGGTTGTTTTTAATAATTAAAT
1 ATTAATT-AATTAATTAATTAATTGGGTTGTTTTTAATAATTAAAT
*
32288115 AATTAATTAATTAATTAATTAATTGGGTTATTTTTAATAATTAAAT
1 -ATTAATTAATTAATTAATTAATTGGGTTGTTTTTAATAATTAAAT
*
32288161 ATTTAATTAAATAATTAA
1 A-TTAATTAATTAATTAA
32288179 ATATTTTTAA
Statistics
Matches: 142, Mismatches: 24, Indels: 40
0.69 0.12 0.19
Matches are distributed among these distances:
34 17 0.12
35 6 0.04
36 1 0.01
37 3 0.02
38 4 0.03
39 5 0.04
40 15 0.11
41 4 0.03
42 9 0.06
43 7 0.05
44 6 0.04
45 14 0.10
46 51 0.36
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (45 bp):
ATTAATTAATTAATTAATTAATTGGGTTGTTTTTAATAATTAAAT
Found at i:32288037 original size:38 final size:37
Alignment explanation
Indices: 32287924--32288042 Score: 147
Period size: 38 Copynumber: 3.2 Consensus size: 37
32287914 TTAATTAAAC
32287924 AATTAAATATTTGGGTTGTTTTTAATAATT-AATTAATT
1 AATTAAATATTTGGGTTGTTTTTAATAATTAAATT--TT
* * *
32287962 AATTAATTAATTGGGTTGTTTTAAATAATTAAA---T
1 AATTAAATATTTGGGTTGTTTTTAATAATTAAATTTT
*
32287996 AATTAAGTATTTGGGTTGTTTTTAATAATTAAAATTTT
1 AATTAAATATTTGGGTTGTTTTTAATAATT-AAATTTT
32288034 AATTAAATA
1 AATTAAATA
32288043 ATCAAATAAT
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
34 28 0.41
35 3 0.04
38 36 0.52
39 2 0.03
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (37 bp):
AATTAAATATTTGGGTTGTTTTTAATAATTAAATTTT
Found at i:32288066 original size:17 final size:16
Alignment explanation
Indices: 32288033--32288075 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
32288023 ATTAAAATTT
32288033 TAATTAAATAATCAAA
1 TAATTAAATAATCAAA
*
32288049 TAATTAATATAATTAAA
1 TAATTAA-ATAATCAAA
*
32288066 TATTTAAATA
1 TAATTAAATA
32288076 TTTTGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TAATTAAATAATCAAA
Found at i:32288078 original size:8 final size:8
Alignment explanation
Indices: 32288033--32288075 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
32288023 ATTAAAATTT
32288033 TAATTAAA
1 TAATTAAA
*
32288041 TAATCAAA
1 TAATTAAA
32288049 TAATTAATA
1 TAATTAA-A
32288058 TAATTAAA
1 TAATTAAA
*
32288066 TATTTAAA
1 TAATTAAA
32288074 TA
1 TA
32288076 TTTTGAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
8 23 0.74
9 8 0.26
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (8 bp):
TAATTAAA
Found at i:32288123 original size:4 final size:4
Alignment explanation
Indices: 32288102--32288138 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
32288092 TGGGTTGTTT
*
32288102 TTAA -TAA TTAA ATAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TTAA TT
32288139 GGGTTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
TTAA
Found at i:32288150 original size:131 final size:131
Alignment explanation
Indices: 32287987--32288264 Score: 350
Period size: 131 Copynumber: 2.1 Consensus size: 131
32287977 TTGTTTTAAA
* *
32287987 TAATTAAATAATTAAGTATTTGGGTTGTTTTTAATAATTAAA-ATTTTAATTAAATAATCAAATA
1 TAATTAAATAATTAAGTAATTGGGTTATTTTTAATAATTAAATA-TTTAATTAAATAATCAAAT-
* * *
32288051 ATTAATATAATTAAATATTT-AAATA-TTTT-GAATTAAATATTTGGGTTGTTTTTAATAATTAA
64 ATT--TATAATTAAATATTTGAAATATTTTTACAATTAAATAATTGGGTTATTTTTAATAATTAA
32288113 ATAAT
127 ATAAT
* * *
32288118 TAATTAATTAATTAATTAATTGGGTTATTTTTAATAATTAAATATTTAATTAAATAATTAAATAT
1 TAATTAAATAATTAAGTAATTGGGTTATTTTTAATAATTAAATATTTAATTAAATAATCAAATAT
* * *
32288183 TTTTAATTAAATATTTGAATTATTTTTAACAATTAATTAATTGGGTTATTTTTAATAATTAAAT-
66 TTATAATTAAATATTTGAAATATTTTT-ACAATTAAATAATTGGGTTATTTTTAATAATTAAATA
*
32288247 AC
130 AT
*
32288249 TATTTATAATAATTAA
1 TAATTA-AATAATTAA
32288265 AATATAATTT
Statistics
Matches: 127, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
128 14 0.11
129 4 0.03
130 7 0.06
131 62 0.49
132 40 0.31
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (131 bp):
TAATTAAATAATTAAGTAATTGGGTTATTTTTAATAATTAAATATTTAATTAAATAATCAAATAT
TTATAATTAAATATTTGAAATATTTTTACAATTAAATAATTGGGTTATTTTTAATAATTAAATAA
T
Found at i:32288190 original size:22 final size:22
Alignment explanation
Indices: 32288150--32288211 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
32288140 GGTTATTTTT
32288150 AATAATTAAATA--TTTAATTA
1 AATAATTAAATATTTTTAATTA
32288170 AATAATTAAATATTTTTAATTA
1 AATAATTAAATATTTTTAATTA
* *
32288192 AATATTTGAATTATTTTTAA
1 AATAATT-AAATATTTTTAA
32288212 CAATTAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 12 0.32
22 14 0.38
23 11 0.30
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AATAATTAAATATTTTTAATTA
Found at i:32288191 original size:14 final size:14
Alignment explanation
Indices: 32288172--32288198 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32288162 TTTAATTAAA
32288172 TAATTAAATATTTT
1 TAATTAAATATTTT
32288186 TAATTAAATATTT
1 TAATTAAATATTT
32288199 GAATTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TAATTAAATATTTT
Found at i:32288216 original size:26 final size:26
Alignment explanation
Indices: 32288165--32288247 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 26
32288155 TTAAATATTT
*
32288165 AATTAAATAATT-AAATATTTTT---
1 AATTAAATAATTGAATTATTTTTAAC
*
32288187 AATTAAATATTTGAATTATTTTTAAC
1 AATTAAATAATTGAATTATTTTTAAC
* ** *
32288213 AATTAATTAATTGGGTTATTTTTAAT
1 AATTAAATAATTGAATTATTTTTAAC
32288239 AATTAAATA
1 AATTAAATA
32288248 CTATTTATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
22 11 0.22
23 9 0.18
26 29 0.59
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (26 bp):
AATTAAATAATTGAATTATTTTTAAC
Found at i:32288253 original size:106 final size:104
Alignment explanation
Indices: 32288047--32288273 Score: 239
Period size: 106 Copynumber: 2.2 Consensus size: 104
32288037 TAAATAATCA
* ** * *
32288047 AATAATT-AATA-TAATTAAATATTTAAATATTTTGAATTAAATATTTGGGTTGTTTTTAATAAT
1 AATAATTAAATATTAATTAAATAATTAAATATTTTGAATTAAATATTTGAATTATTTTTAACAAT
* ** *
32288110 TAAATAATTAATTAATTAATTAATTAATTGGGTTATTTTT
66 TAAATAATTAATTAATTAATTAATTAAAT-GACTATTTAT
*
32288150 AATAATTAAATATTTAATTAAATAATTAAATATTTTTAATTAAATATTTGAATTATTTTTAACAA
1 AATAATTAAATA-TTAATTAAATAATTAAATATTTTGAATTAAATATTTGAATTATTTTTAACAA
* ** *
32288215 TTAATTAATTGGGTTATTTTTAA-TAATTAAAT-ACTATTTAT
65 TTAAATAATT-AATTA--ATTAATTAATTAAATGACTATTTAT
32288256 AATAATTAAA-ATATAATT
1 AATAATTAAATAT-TAATT
32288274 TTATTTTTAT
Statistics
Matches: 103, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
103 7 0.07
104 5 0.05
105 6 0.06
106 70 0.68
107 3 0.03
108 8 0.08
109 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (104 bp):
AATAATTAAATATTAATTAAATAATTAAATATTTTGAATTAAATATTTGAATTATTTTTAACAAT
TAAATAATTAATTAATTAATTAATTAAATGACTATTTAT
Found at i:32289374 original size:20 final size:20
Alignment explanation
Indices: 32289349--32289388 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32289339 ATGAGAAAGA
32289349 AACATTATCACATATGTCAT
1 AACATTATCACATATGTCAT
32289369 AACATTATCACATATGTCAT
1 AACATTATCACATATGTCAT
32289389 GGAGAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.35
Consensus pattern (20 bp):
AACATTATCACATATGTCAT
Found at i:32291007 original size:37 final size:38
Alignment explanation
Indices: 32290933--32291007 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
32290923 AAAGATTAGG
* **
32290933 TTTTGCATTTTTCATTTGGGTTTTTTTGTTTTGTTTTT
1 TTTTGCATTTTTCATTTGGGTTTCTTTGGGTTGTTTTT
32290971 TTTTGC-TTTTTCATTTGGGTTTCCTTTGGGTT-TTTTT
1 TTTTGCATTTTTCATTTGGGTTT-CTTTGGGTTGTTTTT
32291008 AAGATATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 21 0.64
38 12 0.36
ACGTcount: A:0.04, C:0.08, G:0.17, T:0.71
Consensus pattern (38 bp):
TTTTGCATTTTTCATTTGGGTTTCTTTGGGTTGTTTTT
Found at i:32291187 original size:12 final size:12
Alignment explanation
Indices: 32291170--32291212 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
32291160 TATGTATACC
32291170 ATAATATGTGAT
1 ATAATATGTGAT
*
32291182 ATAATACT-TCATT
1 ATAATA-TGTGA-T
32291195 ATAATATGTGAT
1 ATAATATGTGAT
32291207 ATAATA
1 ATAATA
32291213 CTTCATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (12 bp):
ATAATATGTGAT
Found at i:32291198 original size:25 final size:25
Alignment explanation
Indices: 32291170--32291219 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
32291160 TATGTATACC
32291170 ATAATATGTGATATAATACTTCATT
1 ATAATATGTGATATAATACTTCATT
32291195 ATAATATGTGATATAATACTTCATT
1 ATAATATGTGATATAATACTTCATT
32291220 TAAATCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (25 bp):
ATAATATGTGATATAATACTTCATT
Found at i:32293204 original size:23 final size:24
Alignment explanation
Indices: 32293174--32293388 Score: 232
Period size: 23 Copynumber: 9.2 Consensus size: 24
32293164 TAGCGCGCTA
32293174 TCTGTTTAGCAC-GTCTCGTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
*
32293197 TCTGTTTAGCACTGT-TTGTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
32293220 TCTGTTTAGCAC-GTCTCGTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
*
32293243 TCTGTTTAGCACTGTGT-GTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
32293266 TCTGTTTAGCAC-GTCTCGTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
*
32293289 TCTGTTATTAGCACTGTGT-GTGCTC
1 TCTG-T-TTAGCACTGTCTCGTGCTC
* * *
32293314 TCTGATTAGCACTTTGT-GTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
* * * * *
32293337 TCTGATTAGTACTTTGT-GTACTC
1 TCTGTTTAGCACTGTCTCGTGCTC
* *
32293360 TTTGTTTAGCACTGTGT-GTGCTC
1 TCTGTTTAGCACTGTCTCGTGCTC
32293383 TCTGTT
1 TCTGTT
32293389 GCCCAGCACT
Statistics
Matches: 170, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
22 5 0.03
23 139 0.82
24 6 0.04
25 17 0.10
26 3 0.02
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (24 bp):
TCTGTTTAGCACTGTCTCGTGCTC
Found at i:32293241 original size:46 final size:46
Alignment explanation
Indices: 32293174--32293388 Score: 290
Period size: 46 Copynumber: 4.6 Consensus size: 46
32293164 TAGCGCGCTA
*
32293174 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTTTGTGCTC
1 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTGTGTGCTC
32293220 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTGTGTGCTC
1 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTGTGTGCTC
32293266 TCTGTTTAGCACGTCTCGTGCTCTCTGTTATTAGCACTGTGTGTGCTC
1 TCTGTTTAGCACGTCTCGTGCTCTCTG-T-TTAGCACTGTGTGTGCTC
* * * * * * *
32293314 TCTGATTAGCAC-TTTGTGTGCTCTCTGATTAGTACTTTGTGTACTC
1 TCTGTTTAGCACGTCT-CGTGCTCTCTGTTTAGCACTGTGTGTGCTC
* *
32293360 TTTGTTTAGCACTGTGT-GTGCTCTCTGTT
1 TCTGTTTAGCAC-GTCTCGTGCTCTCTGTT
32293389 GCCCAGCACT
Statistics
Matches: 152, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
46 108 0.71
47 3 0.02
48 41 0.27
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (46 bp):
TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTGTGTGCTC
Found at i:32293287 original size:69 final size:68
Alignment explanation
Indices: 32293174--32293388 Score: 265
Period size: 69 Copynumber: 3.1 Consensus size: 68
32293164 TAGCGCGCTA
* *
32293174 TCTGTTTAGCAC-GTCTCGTGCTCTCTGTTTAGCACTGTTTGTGCTCTCTGTTTAGCAC-GTCTC
1 TCTGTTTAGCACTGTGT-GTGCTCTCTGTTTAGCAC-GTTTGTGCTCTCTGTTTAGCACTGTGT-
32293237 GTGCTC
63 GTGCTC
*
32293243 TCTGTTTAGCACTGTGTGTGCTCTCTGTTTAGCACGTCTCGTGCTCTCTGTTATTAGCACTGTGT
1 TCTGTTTAGCACTGTGTGTGCTCTCTGTTTAGCACGT-TTGTGCTCTCTG-T-TTAGCACTGTGT
32293308 GTGCTC
63 GTGCTC
* * * * *
32293314 TCTGATTAGCACTTTGTGTGCTCTCTGATTAGTAC-TTTGTGTACTCTTTGTTTAGCACTGTGTG
1 TCTGTTTAGCACTGTGTGTGCTCTCTGTTTAGCACGTTTGTG--CTCTCTGTTTAGCACTGTGTG
32293378 TGCTC
64 TGCTC
32293383 TCTGTT
1 TCTGTT
32293389 GCCCAGCACT
Statistics
Matches: 129, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
68 2 0.02
69 68 0.53
70 6 0.05
71 50 0.39
72 3 0.02
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (68 bp):
TCTGTTTAGCACTGTGTGTGCTCTCTGTTTAGCACGTTTGTGCTCTCTGTTTAGCACTGTGTGTG
CTC
Found at i:32293408 original size:94 final size:92
Alignment explanation
Indices: 32293174--32293388 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 92
32293164 TAGCGCGCTA
* *
32293174 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTTTGTGCTCTCTGTTTAGCACGTCTCGT
1 TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTATGTGCTCTCTGATTAGCACGTCTCGT
* *
32293239 GCTCTCTGTTTAGCACTGTGTGTGCTC
66 GCTCTCTGATTAGCACTGTGTGTACTC
* *
32293266 TCTGTTTAGCACGTCTCGTGCTCTCTGTTATTAGCACTGTGTGTGCTCTCTGATTAGCAC-TTTG
1 TCTGTTTAGCACGTCTCGTGCTCTCTG-T-TTAGCACTGTATGTGCTCTCTGATTAGCACGTCT-
* * *
32293330 TGTGCTCTCTGATTAGTACTTTGTGTACTC
63 CGTGCTCTCTGATTAGCACTGTGTGTACTC
* *
32293360 TTTGTTTAGCACTGTGT-GTGCTCTCTGTT
1 TCTGTTTAGCAC-GTCTCGTGCTCTCTGTT
32293389 GCCCAGCACT
Statistics
Matches: 109, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
92 28 0.26
93 4 0.04
94 74 0.68
95 3 0.03
ACGTcount: A:0.10, C:0.23, G:0.22, T:0.44
Consensus pattern (92 bp):
TCTGTTTAGCACGTCTCGTGCTCTCTGTTTAGCACTGTATGTGCTCTCTGATTAGCACGTCTCGT
GCTCTCTGATTAGCACTGTGTGTACTC
Found at i:32299679 original size:23 final size:23
Alignment explanation
Indices: 32299653--32299802 Score: 176
Period size: 23 Copynumber: 6.4 Consensus size: 23
32299643 ACACTAGCGC
32299653 GCTCTCTGTTTAGCACTGTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
*
32299676 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGTGT-GT
32299699 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTGTGTGT
* *
32299724 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
* ** *
32299747 GCTCTCTGATTATTACTTTGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
* * *
32299770 ACCCTCTGTTTAGCACTATGTGT
1 GCTCTCTGTTTAGCACTGTGTGT
32299793 GCTCTCTGTT
1 GCTCTCTGTT
32299803 GCCCAGCACT
Statistics
Matches: 109, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
22 3 0.03
23 85 0.78
24 1 0.01
25 17 0.16
26 3 0.03
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (23 bp):
GCTCTCTGTTTAGCACTGTGTGT
Found at i:32302341 original size:41 final size:40
Alignment explanation
Indices: 32302254--32302558 Score: 278
Period size: 41 Copynumber: 7.5 Consensus size: 40
32302244 GGCATTTTTA
* * * *
32302254 ACATAAGCGCC-CTAATGCACTGACCTTTACCGACG-TTT
1 ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
* * *
32302292 ACCAATAAGCGCCGCTATTGCTTTGACCTATAGTGGCGCTTCT
1 A-C-ATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTT-T
* * * *
32302335 ACATAAGCGTCACTATTGCTCTGACTTTTAGCGACGCTTT
1 ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
* * *
32302375 CACATAAGCGCCGCTATTG--ATGACTTTTAGCGGCACTTCT
1 -ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTT-T
* *
32302415 -CATAAACGCCGCTATTGATCTGACCTTTAGCGGCGCTTT
1 ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
* ** * *
32302454 CTCATAAGTACCGCTATTGCTCTGACCTTTAGCAGCGCTTG
1 -ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
* *
32302495 ATCATAAGGGCCGCTATTGCTCTGACCTTTAGCGACGCTTT
1 A-CATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
* *
32302536 CCTATAAGCGCCACTATTGCTCT
1 AC-ATAAGCGCCGCTATTGCTCT
32302559 TCCTTTTGCG
Statistics
Matches: 216, Mismatches: 38, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
38 17 0.08
39 18 0.08
40 28 0.13
41 148 0.69
42 3 0.01
43 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.31
Consensus pattern (40 bp):
ACATAAGCGCCGCTATTGCTCTGACCTTTAGCGGCGCTTT
Found at i:32302557 original size:82 final size:81
Alignment explanation
Indices: 32302255--32302558 Score: 323
Period size: 82 Copynumber: 3.8 Consensus size: 81
32302245 GCATTTTTAA
* * * * *
32302255 CATAAGCGCC-CTAATGCACTGACCTTTACCGACG-TTTACCAATAAGCGCCGCTATTGCTTTGA
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTT-CCTATAAGCGCCGCTATTGCTCTGA
* *
32302318 CCTATAGTGGCGCTTCT
65 CCTTTAGCGGCGCTTCT
* * * *
32302335 ACATAAGCGTCACTATTGCTCTGACTTTTAGCGACGCTTTCAC-ATAAGCGCCGCTATTG--ATG
1 -CATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTTC-CTATAAGCGCCGCTATTGCTCTG
* *
32302397 ACTTTTAGCGGCACTTCT
64 ACCTTTAGCGGCGCTTCT
* * * **
32302415 CATAAACGCCGCTATTGATCTGACCTTTAGCGGCGCTTT-CTCATAAGTACCGCTATTGCTCTGA
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTTCCT-ATAAGCGCCGCTATTGCTCTGA
* *
32302479 CCTTTAGCAGCGCTTGAT
65 CCTTTAGCGGCGCTT-CT
* *
32302497 CATAAGGGCCGCTATTGCTCTGACCTTTAGCGACGCTTTCCTATAAGCGCCACTATTGCTCT
1 CATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTTCCTATAAGCGCCGCTATTGCTCT
32302559 TCCTTTTGCG
Statistics
Matches: 184, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.01
79 47 0.26
80 16 0.09
81 24 0.13
82 90 0.49
83 6 0.03
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (81 bp):
CATAAGCGCCGCTATTGCTCTGACCTTTAGCGACGCTTTCCTATAAGCGCCGCTATTGCTCTGAC
CTTTAGCGGCGCTTCT
Found at i:32306195 original size:58 final size:56
Alignment explanation
Indices: 32306062--32306202 Score: 167
Period size: 58 Copynumber: 2.4 Consensus size: 56
32306052 ATTTTAATAA
** * *
32306062 TAATAATAATATTATTAAAACGTTATTAAATTATATATTATTTTATTAAATTGTATT
1 TAATAATAAT-TTATTAAAATATAATTAAATTATATATTATTTTATTAAATTATATT
* *
32306119 TAATAATAATTATGTTAAAATATAATTAAATTACT-TATTATTTTTGTTAAATTATATT
1 TAATAATAATT-TATTAAAATATAATTAAATTA-TATATTA-TTTTATTAAATTATATT
*
32306177 TAATAATAATCTTATTAAAATTTAAT
1 TAATAATAAT-TTATTAAAATATAAT
32306203 AACAATAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
56 1 0.01
57 32 0.44
58 38 0.53
59 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (56 bp):
TAATAATAATTTATTAAAATATAATTAAATTATATATTATTTTATTAAATTATATT
Found at i:32306345 original size:44 final size:46
Alignment explanation
Indices: 32306282--32306382 Score: 136
Period size: 44 Copynumber: 2.2 Consensus size: 46
32306272 TATTACAGTA
*
32306282 CCATTCAATTCAACCAAACATAAT-AA-TACT-ATTACAGTTCTACT
1 CCATTCAATTCAACCAAACA-AATGAATTACTGATTACAGCTCTACT
* *
32306326 CCATTCAATTCAACCAAACAATTGAATTACTGATTACAGCTCTATT
1 CCATTCAATTCAACCAAACAAATGAATTACTGATTACAGCTCTACT
32306372 CCATTACAATT
1 CCATT-CAATT
32306383 TTATTCCATT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
43 2 0.04
44 22 0.44
45 4 0.08
46 17 0.34
47 5 0.10
ACGTcount: A:0.39, C:0.25, G:0.04, T:0.33
Consensus pattern (46 bp):
CCATTCAATTCAACCAAACAAATGAATTACTGATTACAGCTCTACT
Found at i:32306379 original size:16 final size:16
Alignment explanation
Indices: 32306358--32306413 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 16
32306348 TGAATTACTG
*
32306358 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
* *
32306374 ATTACAATTTTATTCC
1 ATTACAACTCTATTCC
* * *
32306390 ATTACAATTTTATTTC
1 ATTACAACTCTATTCC
32306406 ATTACAAC
1 ATTACAAC
32306414 AAACCAAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.32, C:0.21, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:32308650 original size:21 final size:23
Alignment explanation
Indices: 32308619--32308684 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 23
32308609 GATACCAAAT
*
32308619 AAAAGGTATCGAT-TTTTTTGAC
1 AAAAGGTATCGATACTTTTTGAC
32308641 AAAA-GTATCGATACTTTTTG--
1 AAAAGGTATCGATACTTTTTGAC
*
32308661 -AAAGGTATCGAAACTTTTTGAC
1 AAAAGGTATCGATACTTTTTGAC
32308683 AA
1 AA
32308685 TGTTTGAAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 3 0.08
20 15 0.41
21 8 0.22
22 10 0.27
23 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (23 bp):
AAAAGGTATCGATACTTTTTGAC
Found at i:32311780 original size:21 final size:22
Alignment explanation
Indices: 32311748--32311833 Score: 108
Period size: 21 Copynumber: 4.0 Consensus size: 22
32311738 GATACCAGAT
*
32311748 AAAAGGTATCGATA-TTTGTGAC
1 AAAA-GTATCGATACTTTTTGAC
*
32311770 AAAAATATCGATACTTTTTG--
1 AAAAGTATCGATACTTTTTGAC
*
32311790 AAAGGTATCGATA-TTTTTGAC
1 AAAAGTATCGATACTTTTTGAC
32311811 AAAAGTATCGATACTTTTTGAC
1 AAAAGTATCGATACTTTTTGAC
32311833 A
1 A
32311834 GTGTTTGAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
19 6 0.11
20 11 0.20
21 20 0.36
22 18 0.33
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (22 bp):
AAAAGTATCGATACTTTTTGAC
Found at i:32311794 original size:41 final size:41
Alignment explanation
Indices: 32311749--32311831 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
32311739 ATACCAGATA
32311749 AAAGGTATCGATATTTGTGACAAAAATATCGATACTTTTTG
1 AAAGGTATCGATATTTGTGACAAAAATATCGATACTTTTTG
* *
32311790 AAAGGTATCGATATTTTTGACAAAAGTATCGATACTTTTTG
1 AAAGGTATCGATATTTGTGACAAAAATATCGATACTTTTTG
32311831 A
1 A
32311832 CAGTGTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (41 bp):
AAAGGTATCGATATTTGTGACAAAAATATCGATACTTTTTG
Found at i:32314405 original size:17 final size:17
Alignment explanation
Indices: 32314385--32314424 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
32314375 TTTCAAAATT
*
32314385 TTAAAATTAAAA-CTAAA
1 TTAAAA-TAAAATATAAA
32314402 TTAAAATAAAATATAAA
1 TTAAAATAAAATATAAA
32314419 TTAAAA
1 TTAAAA
32314425 GTTGAACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
TTAAAATAAAATATAAA
Found at i:32318678 original size:24 final size:24
Alignment explanation
Indices: 32318645--32318695 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
32318635 CGAAATAATC
* *
32318645 TTTCAGTTAAACTTTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
32318669 TTTCAATTAAACTCTGTTTATTTG
1 TTTCAATTAAACTCTGTTTATTTG
32318693 TTT
1 TTT
32318696 GAGTCAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.10, G:0.10, T:0.59
Consensus pattern (24 bp):
TTTCAATTAAACTCTGTTTATTTG
Found at i:32318704 original size:24 final size:24
Alignment explanation
Indices: 32318653--32318707 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
32318643 TCTTTCAGTT
* *
32318653 AAACTTTGTTTATTTGTTTCAATT
1 AAACTCTGTTTATTTGTTTCAATC
* *
32318677 AAACTCTGTTTATTTGTTTGAGTC
1 AAACTCTGTTTATTTGTTTCAATC
32318701 AAACTCT
1 AAACTCT
32318708 TATTAGTCTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (24 bp):
AAACTCTGTTTATTTGTTTCAATC
Found at i:32328183 original size:2 final size:2
Alignment explanation
Indices: 32328176--32328219 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
32328166 ACCTTGTTTG
32328176 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32328218 TA
1 TA
32328220 GTTATGAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32330234 original size:18 final size:18
Alignment explanation
Indices: 32330213--32330279 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
32330203 TGGTTCGTTT
*
32330213 GAGCATACTGACTCTTTA
1 GAGCATACTGACTCATTA
* * *
32330231 GAGCATATTGGCTCATTC
1 GAGCATACTGACTCATTA
* * *
32330249 GAACATACTGGCTCGTTA
1 GAGCATACTGACTCATTA
*
32330267 GAGCATACCGACT
1 GAGCATACTGACT
32330280 AGTAAGAGCA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (18 bp):
GAGCATACTGACTCATTA
Found at i:32330256 original size:36 final size:36
Alignment explanation
Indices: 32330198--32330273 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
32330188 AAAGAAATAA
* * * * *
32330198 CATATTGGTTCGTTTGAGCATACTGACTCTTTAGAG
1 CATATTGGCTCATTCGAACATACTGACTCGTTAGAG
*
32330234 CATATTGGCTCATTCGAACATACTGGCTCGTTAGAG
1 CATATTGGCTCATTCGAACATACTGACTCGTTAGAG
32330270 CATA
1 CATA
32330274 CCGACTAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (36 bp):
CATATTGGCTCATTCGAACATACTGACTCGTTAGAG
Found at i:32340656 original size:17 final size:18
Alignment explanation
Indices: 32340634--32340669 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32340624 TAAATGAGTT
32340634 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
32340651 AATTAGGGTATAAATTGG
1 AATTAGGATATAAATTGG
32340669 A
1 A
32340670 TAGAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:32348628 original size:55 final size:55
Alignment explanation
Indices: 32348563--32348701 Score: 162
Period size: 55 Copynumber: 2.6 Consensus size: 55
32348553 AACTAAAAGG
*
32348563 AATATATAAAAATACATAAATATTTTCAAAAAAATATATAATA-ATAAATTTAAAA
1 AATATATAAAAATA-ATAAATATTTTCAAAAAAATAAATAATATATAAATTTAAAA
* * * * *
32348618 AATATATAAAAATAAAAAAT-TTATTGACAAGAATAAATAATATATAAATTTTAAA
1 AATATATAAAAATAATAAATATT-TTCAAAAAAATAAATAATATATAAATTTAAAA
*
32348673 AATATAT--GAA-AATAAATATTTTCAAAAAA
1 AATATATAAAAATAATAAATATTTTCAAAAAA
32348702 TAATAAACTT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
52 12 0.17
53 6 0.09
54 20 0.29
55 32 0.46
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (55 bp):
AATATATAAAAATAATAAATATTTTCAAAAAAATAAATAATATATAAATTTAAAA
Found at i:32348759 original size:25 final size:26
Alignment explanation
Indices: 32348721--32348776 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
32348711 TAAATTTTAT
*
32348721 AATAATATTATATTAATGTTAAATAA
1 AATAATATTATATTAATATTAAATAA
32348747 ATATAAT-TT-TATTAATATTAAATAA
1 A-ATAATATTATATTAATATTAAATAA
32348772 AATAA
1 AATAA
32348777 AGAGTTTCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 4 0.14
25 16 0.57
26 3 0.11
27 5 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
AATAATATTATATTAATATTAAATAA
Found at i:32349571 original size:18 final size:18
Alignment explanation
Indices: 32349548--32349585 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
32349538 TTTTTATTCG
*
32349548 AATTAACTCGAATAACTC
1 AATTAACTCAAATAACTC
*
32349566 AATTAATTCAAATAACTC
1 AATTAACTCAAATAACTC
32349584 AA
1 AA
32349586 ACTATTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.03, T:0.29
Consensus pattern (18 bp):
AATTAACTCAAATAACTC
Found at i:32349848 original size:25 final size:24
Alignment explanation
Indices: 32349815--32349880 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 24
32349805 GGAGAGATTT
32349815 TTATTTTATTTAATATTAATATAA
1 TTATTTTATTTAATATTAATATAA
*
32349839 TTATATTTATTTAATGTTAATATAA
1 TTAT-TTTATTTAATATTAATATAA
* *
32349864 -AATTTTAATTTATTATT
1 TTATTTT-ATTTAATATT
32349881 TTATTTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 3 0.08
24 14 0.39
25 19 0.53
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTATTTTATTTAATATTAATATAA
Found at i:32354819 original size:12 final size:12
Alignment explanation
Indices: 32354804--32354829 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32354794 ATACACTTAA
32354804 AAATATTAAAAC
1 AAATATTAAAAC
32354816 AAATATTAAAAC
1 AAATATTAAAAC
32354828 AA
1 AA
32354830 CAAACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:32354852 original size:41 final size:41
Alignment explanation
Indices: 32354806--32354885 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
32354796 ACACTTAAAA
*
32354806 ATATTAAAACAAAT-ATTAAAACAACAAACAAATTTAAAACG
1 ATATTAAAACAAATCA-TAAAACAACAAACAAATTGAAAACG
*
32354847 ATATTAAAACAAATCATAAAACAATAAACAAATTGAAAA
1 ATATTAAAACAAATCATAAAACAACAAACAAATTGAAAA
32354886 TACAATAAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 35 0.97
42 1 0.03
ACGTcount: A:0.65, C:0.11, G:0.03, T:0.21
Consensus pattern (41 bp):
ATATTAAAACAAATCATAAAACAACAAACAAATTGAAAACG
Found at i:32355545 original size:22 final size:21
Alignment explanation
Indices: 32355520--32355573 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
32355510 ATTCAATCAT
*
32355520 TATTACAAGTAAAAAAAATTAG
1 TATTA-AAATAAAAAAAATTAG
*
32355542 TATTTAAAATAAAAAAAATTAT
1 TA-TTAAAATAAAAAAAATTAG
32355564 TATTATAAAT
1 TATTA-AAAT
32355574 TTGGGTCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 22 0.79
23 3 0.11
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (21 bp):
TATTAAAATAAAAAAAATTAG
Found at i:32356510 original size:21 final size:22
Alignment explanation
Indices: 32356473--32356526 Score: 58
Period size: 20 Copynumber: 2.5 Consensus size: 22
32356463 AAAACACATA
* *
32356473 AAAAATAACATCCAAACA-A-C
1 AAAAATAATAACCAAACAGAGC
32356493 AAAAATAATAACCAAAACAGTAGC
1 AAAAATAATAACC-AAACAG-AGC
32356517 AAAAATAATA
1 AAAAATAATA
32356527 GCAAAATAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 11 0.39
21 5 0.18
23 1 0.04
24 11 0.39
ACGTcount: A:0.67, C:0.17, G:0.04, T:0.13
Consensus pattern (22 bp):
AAAAATAATAACCAAACAGAGC
Found at i:32356555 original size:21 final size:21
Alignment explanation
Indices: 32356529--32356571 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32356519 AAATAATAGC
** *
32356529 AAAATAACATTAAAAACAACA
1 AAAATAACAACAAAAATAACA
*
32356550 AAAATAGCAACAAAAATAACA
1 AAAATAACAACAAAAATAACA
32356571 A
1 A
32356572 CAAAAATAAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.72, C:0.14, G:0.02, T:0.12
Consensus pattern (21 bp):
AAAATAACAACAAAAATAACA
Found at i:32356560 original size:12 final size:12
Alignment explanation
Indices: 32356543--32356588 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
32356533 TAACATTAAA
32356543 AACAACAAAAAT
1 AACAACAAAAAT
*
32356555 AGCAACAAAAAT
1 AACAACAAAAAT
32356567 AACAACAAAAAT
1 AACAACAAAAAT
*
32356579 AACAGCAAAA
1 AACAACAAAA
32356589 CAACATGAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.72, C:0.17, G:0.04, T:0.07
Consensus pattern (12 bp):
AACAACAAAAAT
Found at i:32356582 original size:21 final size:21
Alignment explanation
Indices: 32356473--32356582 Score: 55
Period size: 24 Copynumber: 5.0 Consensus size: 21
32356463 AAAACACATA
* *
32356473 AAAAATAACATC-CAAACAAC
1 AAAAATAACAACAAAAACAAC
* *
32356493 AAAAATAATAACCAAAACAGTAGC
1 AAAAATAACAACAAAAACA--A-C
* * *
32356517 AAAAATAATAGC-AAAATAAC
1 AAAAATAACAACAAAAACAAC
*
32356537 ATTAAA-AACAACAAAAATAGCAAC
1 A-AAAATAACAAC-AAAA-A-CAAC
*
32356561 AAAAATAACAACAAAAATAAC
1 AAAAATAACAACAAAAACAAC
32356582 A
1 A
32356583 GCAAAACAAC
Statistics
Matches: 69, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
20 16 0.23
21 13 0.19
22 4 0.06
23 14 0.20
24 22 0.32
ACGTcount: A:0.68, C:0.16, G:0.04, T:0.12
Consensus pattern (21 bp):
AAAAATAACAACAAAAACAAC
Found at i:32357355 original size:22 final size:22
Alignment explanation
Indices: 32357329--32357381 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
32357319 ACGAATATAT
*
32357329 AAAAT-TACATAATTAATTTCAA
1 AAAATATA-ATAATAAATTTCAA
*
32357351 AAAATATAATAATAAATTTTAA
1 AAAATATAATAATAAATTTCAA
*
32357373 AATATATAA
1 AAAATATAA
32357382 AAAATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 25 0.93
23 2 0.07
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAATATAATAATAAATTTCAA
Found at i:32357907 original size:20 final size:21
Alignment explanation
Indices: 32357869--32357917 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
32357859 TGTCAATTTT
*
32357869 TATATTTTTAAAATTTATTAA
1 TATATTTTTAAAATCTATTAA
* *
32357890 TATATTTTTGAAA-CTATTTA
1 TATATTTTTAAAATCTATTAA
*
32357910 TGTATTTT
1 TATATTTT
32357918 ATATATTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (21 bp):
TATATTTTTAAAATCTATTAA
Found at i:32358122 original size:27 final size:27
Alignment explanation
Indices: 32358091--32358153 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
32358081 ATAAAAAATG
32358091 TTTAAAATTTTTAGATTGATGATTAAA
1 TTTAAAATTTTTAGATTGATGATTAAA
32358118 TTTAAAATTTTTAGATTGATGATTAAA
1 TTTAAAATTTTTAGATTGATGATTAAA
32358145 TTTAAAATT
1 TTTAAAATT
32358154 ATACTGATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (27 bp):
TTTAAAATTTTTAGATTGATGATTAAA
Found at i:32363835 original size:41 final size:41
Alignment explanation
Indices: 32363729--32364035 Score: 203
Period size: 41 Copynumber: 7.5 Consensus size: 41
32363719 AAATACTATA
* * * *
32363729 AAAGGT-AAAGCAATAGCGACGTTTATAGGAAAAACGCCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTAT-GGAAAAGCGCCGCT
* * ** * * *
32363770 AAAAGTCAGAGCATTAACAACGTTTATGGGAAAGCGTCGTT
1 AAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCGCT
* ** **
32363811 AAAGGTCAGAGCATTAGCGGCGTTTTTCCTATAAA-CGCCATT
1 AAAGGTCAGAGCATTAGCGGCGTTTAT-GGA-AAAGCGCCGCT
** * ** * * * * * *
32363853 ATTGCT-TTACCTTTTGTGGCGTTTATGGGAAAGCACCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCGCT
*
32363893 AAAGGTCAGAGCATTAGCGGCGTTTAT-GAAGAAGCGCCTCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATGGAA-AAGCGCCGCT
** * *
32363934 AAAGGTTTGAGCATTAGCGGCTTTTATGGAAAAGTGCCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCGCT
* *
32363975 AAAGGTCAGAACATTAGCGGTGTTTATTGG-AAAGCGCCGCT
1 AAAGGTCAGAGCATTAGCGGCGTTTA-TGGAAAAGCGCCGCT
* *
32364016 AAAGGTTA-AGCAATAGCGGC
1 AAAGGTCAGAGCATTAGCGGC
32364036 ATTTTCGCAT
Statistics
Matches: 196, Mismatches: 62, Indels: 17
0.71 0.23 0.06
Matches are distributed among these distances:
39 3 0.02
40 18 0.09
41 142 0.72
42 30 0.15
43 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (41 bp):
AAAGGTCAGAGCATTAGCGGCGTTTATGGAAAAGCGCCGCT
Found at i:32367060 original size:43 final size:43
Alignment explanation
Indices: 32366996--32367081 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
32366986 TCTATTAATA
32366996 TTAGCGGCGTTTGTGGAAAAAGCGCCACTATAA-ACCATGTTCT
1 TTAGCGGCGTTTGTGGAAAAAGCGCCACTA-AAGACCATGTTCT
* * *
32367039 TTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGACCATGTTCT
1 TTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGACCATGTTCT
32367082 ATAGTGGTGT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGACCATGTTCT
Found at i:32368545 original size:244 final size:244
Alignment explanation
Indices: 32368066--32368559 Score: 792
Period size: 244 Copynumber: 2.0 Consensus size: 244
32368056 AGGGAACAGT
* * * *
32368066 TTGGACTTTGTAAGATGGCAAATAATATGATAAGTTTTAATTTGGGTTGAGAAGCAAAGAATAAA
1 TTGGACTTTCTAAGATGACAAATAATATGATAAGTTTTAAGTTGGGTGGAGAAGCAAAGAATAAA
* * * *
32368131 AAAACATGGTGGGGGAAGATGTGATTTGATTCTTTTTATTTTTCATTAGTATTGTTTATTCATAA
66 AAAACATGGTGAGGAAAGATGTGATTTGATTCTTTTTATTTCTCACTAGTATTGTTTATTCATAA
* * * *
32368196 AAATTTGTTTGATTTGATTTTTTTTTTTGTTTCTCACTAATATTTTAATCTAACATATTAGAAGG
131 AAATTTATTTGATTTGA--TTTCTTTTTGTTTCTCACTAATATTTTAATCTAACATATTAAAAAG
32368261 CAATTCAAATATCTCTTTCTTTTCAAATTCTCAATTTCAACGTAATTAAGC
194 CAATTCAAATATCTCTTTCTTTTCAAATTCTCAATTTCAACGTAATTAAGC
* *
32368312 TTGGACTTTCTAAGATGACAAATAATATGATAAGTTTTAAGTTGGGTGGGGGAGCAAAGAATAAA
1 TTGGACTTTCTAAGATGACAAATAATATGATAAGTTTTAAGTTGGGTGGAGAAGCAAAGAAT-AA
*
32368377 AAAAACATGGTGAGGAAAGATGTGATTTGATTCTTTTTGTTTCTCACTAGTATTGTTTATTCATA
65 AAAAACATGGTGAGGAAAGATGTGATTTGATTCTTTTTATTTCTCACTAGTATTGTTTATTCATA
*
32368442 AAAATTTATTTGATTTGA-TTCTTTTTGTTTCTCACTAATATTTTAATTTAACATATTAAAAAGC
130 AAAATTTATTTGATTTGATTTCTTTTTGTTTCTCACTAATATTTTAATCTAACATATTAAAAAGC
* *
32368506 AATTCAAATATCTCTTTCTTTTCAAATTCTCATTTTCAACGTAATTAAGT
195 AATTCAAATATCTCTTTCTTTTCAAATTCTCAATTTCAACGTAATTAAGC
32368556 TTGG
1 TTGG
32368560 TTTAGTAGAA
Statistics
Matches: 229, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
244 94 0.41
246 56 0.24
247 79 0.34
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (244 bp):
TTGGACTTTCTAAGATGACAAATAATATGATAAGTTTTAAGTTGGGTGGAGAAGCAAAGAATAAA
AAAACATGGTGAGGAAAGATGTGATTTGATTCTTTTTATTTCTCACTAGTATTGTTTATTCATAA
AAATTTATTTGATTTGATTTCTTTTTGTTTCTCACTAATATTTTAATCTAACATATTAAAAAGCA
ATTCAAATATCTCTTTCTTTTCAAATTCTCAATTTCAACGTAATTAAGC
Found at i:32371792 original size:56 final size:58
Alignment explanation
Indices: 32371650--32371811 Score: 204
Period size: 56 Copynumber: 2.8 Consensus size: 58
32371640 TCTAATATTA
* * *
32371650 TATATTATAATTTTATT-AATTCATATTTTAATAATAATAATATTAAAAATGTTATTAAAT
1 TATA-TATTATTTTATTAAATT-ATA-TTTAATAATAATAATATTAAAAATATAATTAAAT
* *
32371710 TATATATTATTTTATTAAATTATATTTAATAATAATTATGTT-AAAATATAATTAAAT
1 TATATATTATTTTATTAAATTATATTTAATAATAATAATATTAAAAATATAATTAAAT
* **
32371767 TATTTATT-TTTTATTAAATTATATTTAATAATAATCTTATTAAAA
1 TATATATTATTTTATTAAATTATATTTAATAATAATAATATTAAAA
32371812 TTTAATAACA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
56 30 0.33
57 23 0.25
58 16 0.18
59 14 0.15
60 8 0.09
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (58 bp):
TATATATTATTTTATTAAATTATATTTAATAATAATAATATTAAAAATATAATTAAAT
Found at i:32383492 original size:27 final size:27
Alignment explanation
Indices: 32383454--32383525 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
32383444 GAGTAATCTA
*
32383454 ATTCTGGCTCAAAAGAGCGTTATTCTG
1 ATTCTGGCTCAAAAGAGCATTATTCTG
32383481 ATTCTGGCTC-AAAGAGCATTATTCTG
1 ATTCTGGCTCAAAAGAGCATTATTCTG
* *
32383507 ATTTTGGGCTCATAAGAGC
1 ATTCT-GGCTCAAAAGAGC
32383526 TAACCATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 19 0.47
27 15 0.38
28 6 0.15
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (27 bp):
ATTCTGGCTCAAAAGAGCATTATTCTG
Found at i:32383536 original size:24 final size:24
Alignment explanation
Indices: 32383507--32383565 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
32383497 CATTATTCTG
32383507 ATTTTGGGCTCATAAGAGCTAACC
1 ATTTTGGGCTCATAAGAGCTAACC
**
32383531 ATTTTGGGCTCATAAGAGCTTGCC
1 ATTTTGGGCTCATAAGAGCTAACC
*
32383555 ATTCTGGGCTC
1 ATTTTGGGCTC
32383566 GTATGAACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (24 bp):
ATTTTGGGCTCATAAGAGCTAACC
Found at i:32388513 original size:20 final size:20
Alignment explanation
Indices: 32388488--32388554 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
32388478 TTAGGTATTG
*
32388488 TTTGGTAAATCCTTATATAT
1 TTTGGTAAATCCTTATAAAT
32388508 TTTGGTATAA-CCTTATAAAT
1 TTTGGTA-AATCCTTATAAAT
** * * *
32388528 TTTAATAAATCTTTACAGAT
1 TTTGGTAAATCCTTATAAAT
32388548 TTTGGTA
1 TTTGGTA
32388555 TGTCAAAATG
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 2 0.05
20 33 0.89
21 2 0.05
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (20 bp):
TTTGGTAAATCCTTATAAAT
Found at i:32388618 original size:20 final size:20
Alignment explanation
Indices: 32388593--32388698 Score: 106
Period size: 20 Copynumber: 5.2 Consensus size: 20
32388583 GGGACCAAGA
32388593 AAATCTTTAAAAATATTGGT
1 AAATCTTTAAAAATATTGGT
* *
32388613 AAATCTTTAGAAGTATTGGT
1 AAATCTTTAAAAATATTGGT
* *
32388633 AAAT-TATTAAAAAATTTTGAT
1 AAATCT-TT-AAAAATATTGGT
* * *
32388654 AAATCTTTAGATATTTTGGT
1 AAATCTTTAAAAATATTGGT
* *
32388674 AAATCCTTAAAAATATTGAT
1 AAATCTTTAAAAATATTGGT
32388694 AAATC
1 AAATC
32388699 AATAGAAATA
Statistics
Matches: 69, Mismatches: 14, Indels: 6
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.01
20 53 0.77
21 14 0.20
22 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (20 bp):
AAATCTTTAAAAATATTGGT
Found at i:32388657 original size:41 final size:40
Alignment explanation
Indices: 32388593--32388698 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 40
32388583 GGGACCAAGA
* *
32388593 AAATCTTTAAAAATATTGGTAAATCTTTAGA-AGTATTGGT
1 AAATCATTAAAAATATTGATAAATCTTTAGATA-TATTGGT
* * *
32388633 AAATTATTAAAAAATTTTGATAAATCTTTAGATATTTTGGT
1 AAATCATT-AAAAATATTGATAAATCTTTAGATATATTGGT
*
32388674 AAATCCTTAAAAATATTGATAAATC
1 AAATCATTAAAAATATTGATAAATC
32388699 AATAGAAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 22 0.39
41 33 0.59
42 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (40 bp):
AAATCATTAAAAATATTGATAAATCTTTAGATATATTGGT
Found at i:32388812 original size:19 final size:20
Alignment explanation
Indices: 32388792--32388866 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
32388782 TCGTATAATC
*
32388792 TTAGAAATTTTGATAAA-TC
1 TTAGAAATTTTGATAAATTA
* * **
32388811 TTAAAAAATTCAATAAATTA
1 TTAGAAATTTTGATAAATTA
32388831 TTA-AATATTTTGATAAATTA
1 TTAGAA-ATTTTGATAAATTA
*
32388851 TTAGAAATATTGATAA
1 TTAGAAATTTTGATAA
32388867 TTTACTATTT
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
19 15 0.34
20 27 0.61
21 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (20 bp):
TTAGAAATTTTGATAAATTA
Found at i:32390598 original size:88 final size:88
Alignment explanation
Indices: 32390487--32390651 Score: 244
Period size: 88 Copynumber: 1.9 Consensus size: 88
32390477 GCACTGCCTG
* * *
32390487 GTGTGATATTTGTATGTGTTTCATGGAAGCATTGAGAGAACAGGAAGGTTACTTGT-C-CAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAACACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
32390550 GAAAAGAGAAAAGGGTTACTGTCCA
66 G--AAGAGAAAAGGGTTACTGTCCA
* * *
32390575 GTGTGATATTTGGATGTGTTTCATTGAAACACTGAGTGAACAGGAAGGTTAGTTGTCCTCAAAGA
1 GTGTGATATTTGGATGTGTTTCATGGAAACACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
32390640 GAAGAGAAAAGG
66 GAAGAGAAAAGG
32390652 AAGGTTATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 61 0.88
89 1 0.01
90 7 0.10
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (88 bp):
GTGTGATATTTGGATGTGTTTCATGGAAACACTGAGAGAACAGGAAGGTTACTTGTCCTCAAAGA
GAAGAGAAAAGGGTTACTGTCCA
Found at i:32395558 original size:31 final size:31
Alignment explanation
Indices: 32395523--32395585 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
32395513 AGTATGTAGC
32395523 ATCATTCCACAATAGGGGAATTCTTAGCCTG
1 ATCATTCCACAATAGGGGAATTCTTAGCCTG
*
32395554 ATCATTCCACAATAGGGTAATTCTTAGCCTG
1 ATCATTCCACAATAGGGGAATTCTTAGCCTG
32395585 A
1 A
32395586 CTAATGGGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (31 bp):
ATCATTCCACAATAGGGGAATTCTTAGCCTG
Found at i:32399996 original size:35 final size:35
Alignment explanation
Indices: 32399957--32400062 Score: 167
Period size: 35 Copynumber: 3.0 Consensus size: 35
32399947 GATTTAACAC
* * *
32399957 AATGACATGTTTAACATGTGAATCAGAAACAGAAT
1 AATGACATGTTTAACATGCGAATCATAATCAGAAT
*
32399992 AATGACATGTTTAACATACGAATCATAATCAGAAT
1 AATGACATGTTTAACATGCGAATCATAATCAGAAT
*
32400027 AATAACATGTTTAACATGCGAATCATAATCAGAAT
1 AATGACATGTTTAACATGCGAATCATAATCAGAAT
32400062 A
1 A
32400063 GTACATGCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.27
Consensus pattern (35 bp):
AATGACATGTTTAACATGCGAATCATAATCAGAAT
Found at i:32400283 original size:35 final size:35
Alignment explanation
Indices: 32400239--32400352 Score: 108
Period size: 35 Copynumber: 3.3 Consensus size: 35
32400229 TTTTAACGAG
*
32400239 CATGCGAATCAGAAAT-AGAATAATGGCATGCTTAA
1 CATGCGAATCA-AAATCAGAATAATAGCATGCTTAA
* * * * *
32400274 CATGTGAATCACAGTCATAATAATAGCATGTTTAA
1 CATGCGAATCAAAATCAGAATAATAGCATGCTTAA
* * *
32400309 CATGCGAATCATAATCAGAATATTA-CATGC-TCA
1 CATGCGAATCAAAATCAGAATAATAGCATGCTTAA
*
32400342 CATGTGAATCA
1 CATGCGAATCA
32400353 GAATATCAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
33 12 0.19
34 6 0.09
35 46 0.72
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (35 bp):
CATGCGAATCAAAATCAGAATAATAGCATGCTTAA
Found at i:32406355 original size:16 final size:17
Alignment explanation
Indices: 32406320--32406355 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32406310 TACATGCATG
*
32406320 ACATAAATTTAATGATT
1 ACATAAATTTAATAATT
32406337 ACATAAATTTAA-AATT
1 ACATAAATTTAATAATT
32406353 ACA
1 ACA
32406356 AAAAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (17 bp):
ACATAAATTTAATAATT
Found at i:32407555 original size:14 final size:15
Alignment explanation
Indices: 32407537--32407570 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
32407527 GCAGTGGCAG
*
32407537 AGACGTGGTGGTGTC
1 AGACGTGGGGGTGTC
32407552 -GACGTGGGGGTGTC
1 AGACGTGGGGGTGTC
32407566 AGACG
1 AGACG
32407571 ACCTTGGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.15, C:0.15, G:0.50, T:0.21
Consensus pattern (15 bp):
AGACGTGGGGGTGTC
Found at i:32415152 original size:24 final size:24
Alignment explanation
Indices: 32415125--32415170 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
32415115 CTTGTACAAG
*
32415125 AAACAGAGAAATCAGTTTACTCGA
1 AAACAGAAAAATCAGTTTACTCGA
*
32415149 AAACAGAAAAATTAGTTTACTC
1 AAACAGAAAAATCAGTTTACTC
32415171 TTTCAGGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.24
Consensus pattern (24 bp):
AAACAGAAAAATCAGTTTACTCGA
Found at i:32417305 original size:43 final size:43
Alignment explanation
Indices: 32417252--32417335 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
32417242 TTATCCGGAT
* *
32417252 AGCTGGTAGATGCGGCGATAATTTTGAATATGCTCATGCAGTG
1 AGCTGGTAGATGCGGCGACAATTTTGAACATGCTCATGCAGTG
* * **
32417295 AGCTGTTAGATGCGGGGACAATTTTGGGCATGCTCATGCAG
1 AGCTGGTAGATGCGGCGACAATTTTGAACATGCTCATGCAG
32417336 CGATATTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (43 bp):
AGCTGGTAGATGCGGCGACAATTTTGAACATGCTCATGCAGTG
Found at i:32418436 original size:17 final size:17
Alignment explanation
Indices: 32418414--32418502 Score: 72
Period size: 17 Copynumber: 5.1 Consensus size: 17
32418404 CACTAACATT
32418414 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
*
32418431 AAAATGCAACGACAATG
1 AAAATGCAATGACAATG
* ** * *
32418448 ATTACTATTAAAATAAC-ATT
1 A--A--AATGCAATGACAATG
32418468 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
*
32418485 AAAATGCAACGACAATG
1 AAAATGCAATGACAATG
32418502 A
1 A
32418503 TTACTATTAA
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
16 7 0.13
17 36 0.67
18 1 0.02
19 1 0.02
20 3 0.06
21 6 0.11
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:32418489 original size:54 final size:54
Alignment explanation
Indices: 32418407--32418517 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
32418397 TCCAATGCAC
32418407 TAACATTAAAATGCAATGACAATGAAAATGCAACGACAATGATTACTATTAAAA
1 TAACATTAAAATGCAATGACAATGAAAATGCAACGACAATGATTACTATTAAAA
32418461 TAACATTAAAATGCAATGACAATGAAAATGCAACGACAATGATTACTATTAAAA
1 TAACATTAAAATGCAATGACAATGAAAATGCAACGACAATGATTACTATTAAAA
32418515 TAA
1 TAA
32418518 AAACTACATG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (54 bp):
TAACATTAAAATGCAATGACAATGAAAATGCAACGACAATGATTACTATTAAAA
Found at i:32419859 original size:38 final size:38
Alignment explanation
Indices: 32419803--32419877 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
32419793 ACATTTCTAA
*
32419803 ACATCGTCATGCAGTGACAATTTTGGGCGCAATTTTGG
1 ACATCGTCATGCAGTGACAATTTTGGACGCAATTTTGG
*
32419841 ACATTGTCATGCAGTGACAATTTTGGACGCAATTTTG
1 ACATCGTCATGCAGTGACAATTTTGGACGCAATTTTG
32419878 AATAGATTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (38 bp):
ACATCGTCATGCAGTGACAATTTTGGACGCAATTTTGG
Found at i:32427324 original size:48 final size:48
Alignment explanation
Indices: 32427258--32427373 Score: 232
Period size: 48 Copynumber: 2.4 Consensus size: 48
32427248 TATATTTATA
32427258 TATTATCCCGTTAGTCCTAAGGTCTGTGAGGATAATATGACCCTATTT
1 TATTATCCCGTTAGTCCTAAGGTCTGTGAGGATAATATGACCCTATTT
32427306 TATTATCCCGTTAGTCCTAAGGTCTGTGAGGATAATATGACCCTATTT
1 TATTATCCCGTTAGTCCTAAGGTCTGTGAGGATAATATGACCCTATTT
32427354 TATTATCCCGTTAGTCCTAA
1 TATTATCCCGTTAGTCCTAA
32427374 TGTTAGATCT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (48 bp):
TATTATCCCGTTAGTCCTAAGGTCTGTGAGGATAATATGACCCTATTT
Found at i:32429706 original size:96 final size:98
Alignment explanation
Indices: 32429536--32429746 Score: 234
Period size: 96 Copynumber: 2.2 Consensus size: 98
32429526 CAGTGATTTT
32429536 TTCTATAAGCCT-TCCTCATGCATCTAGGAACAGGATCACTTTACCACATTCCATGAACCTTTCC
1 TTCTATAAGCCTCTCCTCATGCATCTAGGAACAGGATCACTTTACCACATTCCATGAACCTTTCC
32429600 TCATGCGTTTGGAAGCAA-GTCACTCTACCACC
66 TCATGCGTTTGGAAGCAATGTCACTCTACCACC
* * * * * * *
32429632 TTCTGTAAGCCTCTCC-CATGCATCTGGGAGCA-GAGCTATTTTACCACCTTCCGT-AAGCCTTT
1 TTCTATAAGCCTCTCCTCATGCATCTAGGAACAGGATC-ACTTTACCACATTCCATGAA-CCTTT
* * * * * *
32429694 CCTTATGTGTTTGGGAGCAATGTTACTTTACGACC
64 CCTCATGCGTTTGGAAGCAATGTCACTCTACCACC
*
32429729 TTCTATAGGCCTCCTCCT
1 TTCTATAAGCCT-CTCCT
32429747 ATGTGTTTGG
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
95 5 0.05
96 61 0.65
97 24 0.26
98 4 0.04
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (98 bp):
TTCTATAAGCCTCTCCTCATGCATCTAGGAACAGGATCACTTTACCACATTCCATGAACCTTTCC
TCATGCGTTTGGAAGCAATGTCACTCTACCACC
Found at i:32429730 original size:49 final size:47
Alignment explanation
Indices: 32429601--32429758 Score: 136
Period size: 49 Copynumber: 3.3 Consensus size: 47
32429591 AACCTTTCCT
* * *
32429601 CATGCGTTTGGAAGCAAGTCACTCTACCACCTTCTGTAAGCCTCTCC
1 CATGCGTTTGGGAGCAAGTTACTTTACCACCTTCTGTAAGCCTCTCC
* * * * * *
32429648 CATGCATCTGGGAGCAGAGCTATTTTACCACCTTCCGTAAGCCTTTCC
1 CATGCGTTTGGGAGCA-AGTTACTTTACCACCTTCTGTAAGCCTCTCC
* * * * *
32429696 TTATGTGTTTGGGAGCAATGTTACTTTACGACCTTCTATAGGCCTCCTCC
1 -CATGCGTTTGGGAGCAA-GTTACTTTACCACCTTCTGTAAGCCT-CTCC
* *
32429746 TATGTGTTTGGGA
1 CATGCGTTTGGGA
32429759 ACAGGATATT
Statistics
Matches: 87, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
47 13 0.15
48 26 0.30
49 45 0.52
50 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (47 bp):
CATGCGTTTGGGAGCAAGTTACTTTACCACCTTCTGTAAGCCTCTCC
Found at i:32430094 original size:32 final size:33
Alignment explanation
Indices: 32430040--32430104 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
32430030 AAAAGTAATA
***
32430040 TTCAAACATTAAGTGTACTTG-TTACAAACATG
1 TTCAAACATTAAACATACTTGTTTACAAACATG
*
32430072 TTCAAACATTAAACATATTTGTTTACAAACATG
1 TTCAAACATTAAACATACTTGTTTACAAACATG
32430105 ATTGAACATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.35
Consensus pattern (33 bp):
TTCAAACATTAAACATACTTGTTTACAAACATG
Found at i:32430513 original size:218 final size:218
Alignment explanation
Indices: 32430135--32430601 Score: 934
Period size: 218 Copynumber: 2.1 Consensus size: 218
32430125 TATTCATGAA
32430135 GAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCAACAATT
1 GAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCAACAATT
32430200 TCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGAAATTAA
66 TCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGAAATTAA
32430265 GAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGT
131 GAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGT
32430330 TTCATTCAATCCTTTTCCTATTC
196 TTCATTCAATCCTTTTCCTATTC
32430353 GAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCAACAATT
1 GAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCAACAATT
32430418 TCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGAAATTAA
66 TCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGAAATTAA
32430483 GAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGT
131 GAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGT
32430548 TTCATTCAATCCTTTTCCTATTC
196 TTCATTCAATCCTTTTCCTATTC
32430571 GAGAAAGGATTGTATGAAACAGGGATATTAT
1 GAGAAAGGATTGTATGAAACAGGGATATTAT
32430602 TCAAAATTAT
Statistics
Matches: 249, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
218 249 1.00
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (218 bp):
GAGAAAGGATTGTATGAAACAGGGATATTATCCCTTTCCAATAGTTTTATGACACATCAACAATT
TCATCCTAAATTTCAGGATTTTAATTGTAATTTGATTTTTTTCAGGATGAAAATGTTGAAATTAA
GAATGAAAATACTGATGTGGCATAAAACTATTGGAAAAGGGACACAAATGACGTGGTGTCACTGT
TTCATTCAATCCTTTTCCTATTC
Found at i:32432077 original size:20 final size:20
Alignment explanation
Indices: 32432052--32432097 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
32432042 CTCATTTATT
32432052 TATATAAATACATTAAT-AAA
1 TATATAAATACA-TAATAAAA
*
32432072 TATATAAATATATAATAAAA
1 TATATAAATACATAATAAAA
32432092 TATATA
1 TATATA
32432098 TTATATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
TATATAAATACATAATAAAA
Found at i:32433187 original size:125 final size:126
Alignment explanation
Indices: 32432952--32433571 Score: 665
Period size: 125 Copynumber: 4.8 Consensus size: 126
32432942 TTTTGGGCTA
* * * *
32432952 ACACTTTCCTAAGTGTTGGGATAGAGTTGTCGACATACGTTTTGGCCAACTCTTTTGTATAAGGG
1 ACACTTTCCAAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTC-TTTGTATAAGGG
32433017 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAACA-TATGCCG
65 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAACACTATGCCG
* *
32433078 ACACTTTCCAAAGTGTTGGGATAGATTTACCGACATACGCTTTGGTCAACTCTTTGTATAAGGGT
1 ACACTTTCCAAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
* * * * * **
32433143 TGGGATATGCATGCTTAAGGTAACGCTTAAATAATAGTCGGCTTTGTCCAACACTATGTTG
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAACACTATGCCG
* * * *
32433204 ACACTTTTCC-AAGTGTT-GGTTAGAGTTT-CTGACATACGCTTTGGCAAACTCCTTGTATAAGG
1 ACAC-TTTCCAAAGTGTTGGGATAGA-TTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGG
*** * * **
32433266 GTTGGGATATGCATGCCTAATATAACGTTTAAATAAAAGTTGGCTTTGTT-CAACACTATGCCG
64 GTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTT-TTCCAACACTATGCCG
* * * * * *
32433329 ACACTTTTAGACCGACAATTTCCTAAGTGTTGGGATAGATTTGTCGGCATAAGTTTTGACCAATT
1 ACAC-TTT----C--C-A------AAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACT
* **
32433394 TTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAATTTTTTCCAA
52 CTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAA
*
32433459 CACTATGCTG
117 CACTATGCCG
* * * * * * *
32433469 ACACTTTCCTAAGTGTTGAGATATATTTGCCGACATATGCTTTCGCCAACTCTTTGTATAATGAT
1 ACACTTTCCAAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
*
32433534 TGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGT
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
32433572 TGGCAAATTA
Statistics
Matches: 411, Mismatches: 62, Indels: 42
0.80 0.12 0.08
Matches are distributed among these distances:
125 157 0.38
126 146 0.36
127 5 0.01
129 1 0.00
131 1 0.00
133 1 0.00
135 1 0.00
139 15 0.04
140 84 0.20
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (126 bp):
ACACTTTCCAAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAACACTATGCCG
Found at i:32433207 original size:126 final size:126
Alignment explanation
Indices: 32432952--32433571 Score: 681
Period size: 126 Copynumber: 4.8 Consensus size: 126
32432942 TTTTGGGCTA
* * *
32432952 ACACTTTCCTAAGTGTTGGGATAGAGTTGTCGACATACGTTTTGGCCAACTCTTTTGTATAAGGG
1 ACACTTTCCTAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTC-TTTGTATAAGGG
* *
32433017 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTTTCCAACA-TATGCCG
65 TTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTGTCCAACACTATGCTG
* * *
32433078 ACACTTTCCAAAGTGTTGGGATAGATTTACCGACATACGCTTTGGTCAACTCTTTGTATAAGGGT
1 ACACTTTCCTAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
* * * * *
32433143 TGGGATATGCATGCTTAAGGTAACGCTTAAATAATAGTCGGCTTTGTCCAACACTATGTTG
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTGTCCAACACTATGCTG
* * * *
32433204 ACACTTTTCC-AAGTGTT-GGTTAGAGTTT-CTGACATACGCTTTGGCAAACTCCTTGTATAAGG
1 ACAC-TTTCCTAAGTGTTGGGATAGA-TTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGG
*** * * ** *
32433266 GTTGGGATATGCATGCCTAATATAACGTTTAAATAAAAGTTGGCTTTGTTCAACACTATGCCGAC
64 GTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTGTCCAACACTAT---G--
32433331 ACTTTTAG
124 -C---T-G
* * * * * * *
32433339 ACCGACAATTTCCTAAGTGTTGGGATAGATTTGTCGGCATAAGTTTTGACCAATTTTTTGTATAA
1 A-C-AC--TTTCCTAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAA
** *
32433404 GGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAATTTTTTCCAACACTATGCTG
62 GGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTGTCCAACACTATGCTG
* * * * * *
32433469 ACACTTTCCTAAGTGTTGAGATATATTTGCCGACATATGCTTTCGCCAACTCTTTGTATAATGAT
1 ACACTTTCCTAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
*
32433534 TGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGT
66 TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGT
32433572 TGGCAAATTA
Statistics
Matches: 413, Mismatches: 62, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
125 149 0.36
126 151 0.37
127 5 0.01
128 3 0.01
129 1 0.00
130 2 0.00
131 1 0.00
134 2 0.00
135 2 0.00
136 1 0.00
137 3 0.01
138 5 0.01
139 10 0.02
140 78 0.19
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (126 bp):
ACACTTTCCTAAGTGTTGGGATAGATTTGCCGACATACGCTTTGGCCAACTCTTTGTATAAGGGT
TGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCAGCTTTGTCCAACACTATGCTG
Found at i:32433565 original size:391 final size:391
Alignment explanation
Indices: 32432844--32433567 Score: 1087
Period size: 391 Copynumber: 1.9 Consensus size: 391
32432834 ATACTTGCCA
* *
32432844 ACATACGCTTTGACCAACTCTTTGTATAAGGGTTGGGATATGCATGCCCTAGACAATACTTAAAT
1 ACATACGCTTTGACAAACTCCTTGTATAAGGGTTGGGATATGCATGCCCTAGACAATACTTAAAT
* * * * *
32432909 AAGAGTTGGCTTTATCCAACACTATGCCAACACTTTTGGGCTAACACTTTCCTAAGTGTTGGGAT
66 AAAAGTTGGCTTTATCCAACACTATGCCAACACTTTTAGACCAACAATTTCCTAAGTGTTGGGAT
* *
32432974 AGAGTTGTCGACATACGTTTTGGCCAACTCTTTTGTATAAGGGTTGGGATATGCATGCCTAAGGC
131 AGAGTTGTCGACATAAGTTTTGACCAACTCTTTTGTATAAGGGTTGGGATATGCATGCCTAAGGC
* *
32433039 AACGCTTAAATAAGAGTCAGCTTTTTCCAACATATGCCGACACTTTCCAAAGTGTTGGGATAGAT
196 AACGCTTAAATAAGAGTCAACTTTTTCCAACATATGCCGACACTTTCCAAAGTGTTGAGATAGAT
* * * * * *
32433104 TTACCGACATACGCTTTGGTCAACTCTTTGTATAAGGGTTGGGATATGCATGCTTAAGGTAACGC
261 TTACCGACATACGCTTTCGCCAACTCTTTGTATAAGGATTGGGATATGCATGCCTAAGGCAACAC
32433169 TTAAATAATAGTCGGCTTTGTCCAACACTATGTTGACACTTTTCCAAGTGTTGGTTAGAGTTTCT
326 TTAAATAATAGTCGGCTTTGTCCAACACTATGTTGACACTTTTCCAAGTGTTGGTTAGAGTTTCT
32433234 G
391 G
* *
32433235 ACATACGCTTTGGCAAACTCCTTGTATAAGGGTTGGGATATGCATG-CCTA-A-TATAACGTTTA
1 ACATACGCTTTGACAAACTCCTTGTATAAGGGTTGGGATATGCATGCCCTAGACAAT-AC--TTA
* * * *
32433297 AATAAAAGTTGGCTTTGTTCAACACTATGCCGACACTTTTAGACCGACAATTTCCTAAGTGTTGG
63 AATAAAAGTTGGCTTTATCCAACACTATGCCAACACTTTTAGACCAACAATTTCCTAAGTGTTGG
* * *
32433362 GATAGATTTGTCGGCATAAGTTTTGACCAA-TTTTTTGTATAAGGGTTGGGATATGCATGCCTAA
128 GATAGAGTTGTCGACATAAGTTTTGACCAACTCTTTTGTATAAGGGTTGGGATATGCATGCCTAA
* * *
32433426 GGCAACGCTTAAATAAGAGTCAATTTTTTCCAACACTATGCTGACACTTTCCTAAGTGTTGAGAT
193 GGCAACGCTTAAATAAGAGTCAACTTTTTCCAACA-TATGCCGACACTTTCCAAAGTGTTGAGAT
* * * *
32433491 ATATTTGCCGACATATGCTTTCGCCAACTCTTTGTATAATGATTGGGATATGCATGCCTAAGGCA
257 AGATTTACCGACATACGCTTTCGCCAACTCTTTGTATAAGGATTGGGATATGCATGCCTAAGGCA
32433556 ACACTTAAATAA
322 ACACTTAAATAA
32433568 GAGTTGGCAA
Statistics
Matches: 296, Mismatches: 33, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
388 2 0.01
389 3 0.01
390 70 0.24
391 221 0.75
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (391 bp):
ACATACGCTTTGACAAACTCCTTGTATAAGGGTTGGGATATGCATGCCCTAGACAATACTTAAAT
AAAAGTTGGCTTTATCCAACACTATGCCAACACTTTTAGACCAACAATTTCCTAAGTGTTGGGAT
AGAGTTGTCGACATAAGTTTTGACCAACTCTTTTGTATAAGGGTTGGGATATGCATGCCTAAGGC
AACGCTTAAATAAGAGTCAACTTTTTCCAACATATGCCGACACTTTCCAAAGTGTTGAGATAGAT
TTACCGACATACGCTTTCGCCAACTCTTTGTATAAGGATTGGGATATGCATGCCTAAGGCAACAC
TTAAATAATAGTCGGCTTTGTCCAACACTATGTTGACACTTTTCCAAGTGTTGGTTAGAGTTTCT
G
Found at i:32440309 original size:3 final size:3
Alignment explanation
Indices: 32440301--32440326 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
32440291 TCCATTTTAT
32440301 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
32440327 TTGGAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:32451404 original size:2 final size:2
Alignment explanation
Indices: 32451397--32451439 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
32451387 TGTATCTTTT
32451397 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32451438 TA
1 TA
32451440 CTAATTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:32451716 original size:17 final size:16
Alignment explanation
Indices: 32451667--32451731 Score: 80
Period size: 16 Copynumber: 4.1 Consensus size: 16
32451657 TTAAGTATTT
*
32451667 TAAAAGTATTATTATA
1 TAAAACTATTATTATA
*
32451683 TAAAACTATTACT-TA
1 TAAAACTATTATTATA
*
32451698 -AAAAGTATTATTATA
1 TAAAACTATTATTATA
32451713 TAAAACTATTATATATA
1 TAAAACTATTAT-TATA
32451730 TA
1 TA
32451732 TATACGATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.24
15 4 0.10
16 21 0.51
17 6 0.15
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (16 bp):
TAAAACTATTATTATA
Found at i:32451724 original size:13 final size:13
Alignment explanation
Indices: 32451676--32451727 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
32451666 TTAAAAGTAT
32451676 TATTATATAAAAC
1 TATTATATAAAAC
* *
32451689 TATTACTTAAAAAGTAT
1 TATTA--TATAAA--AC
32451706 TATTATATAAAAC
1 TATTATATAAAAC
32451719 TATTATATA
1 TATTATATA
32451728 TATATATACG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
13 15 0.48
15 10 0.32
17 6 0.19
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (13 bp):
TATTATATAAAAC
Found at i:32452489 original size:16 final size:17
Alignment explanation
Indices: 32452468--32452500 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32452458 ATTTGTTCGG
32452468 ACTC-AATTCAAAACCA
1 ACTCAAATTCAAAACCA
32452484 ACTCAAAATTCAAAACC
1 ACTC-AAATTCAAAACC
32452501 CAATTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
18 11 0.73
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (17 bp):
ACTCAAATTCAAAACCA
Found at i:32453418 original size:18 final size:18
Alignment explanation
Indices: 32453384--32453418 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32453374 AAATTGCCCC
* *
32453384 TTTAATTTATTTCTTTTT
1 TTTAATTTAGTTATTTTT
32453402 TTTAATTTAGTTATTTT
1 TTTAATTTAGTTATTTT
32453419 ACCTTTGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTAATTTAGTTATTTTT
Found at i:32453536 original size:30 final size:30
Alignment explanation
Indices: 32453500--32453659 Score: 171
Period size: 30 Copynumber: 5.3 Consensus size: 30
32453490 TTTAAAAAAA
* **
32453500 ATATTTTGACCCCTAAACTTTTTTAAAATT
1 ATATTTTAACCCCTAAACTTTTCCAAAATT
*
32453530 ATATTTTAA-CCCTCAAAC-TTTCTTAAAATT
1 ATATTTTAACCCCT-AAACTTTTC-CAAAATT
*
32453560 ATATTTTAACCTCTAAACTTTTCCAAAATT
1 ATATTTTAACCCCTAAACTTTTCCAAAATT
* * *
32453590 ACATTTTAACCTCTTAACTTTTCCAAAATT
1 ATATTTTAACCCCTAAACTTTTCCAAAATT
* * * *
32453620 ACATTTTGACCCTTAAACTTTCCCAAAATT
1 ATATTTTAACCCCTAAACTTTTCCAAAATT
*
32453650 ACATTTTAAC
1 ATATTTTAAC
32453660 TTAAAAATTC
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.06
30 100 0.88
31 7 0.06
ACGTcount: A:0.35, C:0.21, G:0.01, T:0.42
Consensus pattern (30 bp):
ATATTTTAACCCCTAAACTTTTCCAAAATT
Found at i:32453565 original size:60 final size:61
Alignment explanation
Indices: 32453500--32453659 Score: 200
Period size: 60 Copynumber: 2.7 Consensus size: 61
32453490 TTTAAAAAAA
** * *
32453500 ATATTTTGACCCCTAAACTTTTTTAAAATTATATTTTAACCCTC-AAAC-TTTCTTAAAATT
1 ATATTTTGACCCCTAAACTTTTCCAAAATTACATTTTAACCCTCTAAACTTTTC-CAAAATT
* * *
32453560 ATATTTTAACCTCTAAACTTTTCCAAAATTACATTTTAA-CCTCTTAACTTTTCCAAAATT
1 ATATTTTGACCCCTAAACTTTTCCAAAATTACATTTTAACCCTCTAAACTTTTCCAAAATT
* * *
32453620 ACATTTTGACCCTTAAACTTTCCCAAAATTACATTTTAAC
1 ATATTTTGACCCCTAAACTTTTCCAAAATTACATTTTAAC
32453660 TTAAAAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
59 4 0.05
60 77 0.91
61 4 0.05
ACGTcount: A:0.35, C:0.21, G:0.01, T:0.42
Consensus pattern (61 bp):
ATATTTTGACCCCTAAACTTTTCCAAAATTACATTTTAACCCTCTAAACTTTTCCAAAATT
Done.