Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 116 of 163
Found at i:32456669 original size:38 final size:38
Alignment explanation
Indices: 32456579--32456657 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 38
32456569 TATTACACAC
* *
32456579 ATATAACATACAATAAATAATTAAAATATATGTTTCAA
1 ATATAACATATAATAAATAATTAAAATATAGGTTTCAA
* *
32456617 ATATAACATATAATAAATAATTAAAATGTAAGGTTTGAA
1 ATATAACATATAATAAATAATTAAAATAT-AGGTTTCAA
32456656 AT
1 AT
32456658 TAATTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 27 0.75
39 9 0.25
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.34
Consensus pattern (38 bp):
ATATAACATATAATAAATAATTAAAATATAGGTTTCAA
Found at i:32459284 original size:236 final size:236
Alignment explanation
Indices: 32458868--32459340 Score: 763
Period size: 236 Copynumber: 2.0 Consensus size: 236
32458858 TAAAGGTTGT
* *
32458868 TTTTTTGTGTTTTTTTATACTTTTCCAATGTTTTGGCTGCTATTTGGTTTTTTTGCTTCGTAGAA
1 TTTTTTGTGTTTTTTTATACTTTTCCAATGCTTTGACTGCTATTTGGTTTTTTTGCTTCGTAGAA
* *
32458933 CTTAGATTATGTTTAGAATAATAGCAAGAAAGTTTTTCTTATAGAAAGGAACTTTTGTATGTATT
66 CTTACATTATGTTTAGAATAATAGCAAGAAACTTTTTCTTATAGAAAGGAACTTTTGTATGTATT
32458998 TCTTATTATCTTGATCAGTTTATTCCAATTTGGTAAAAGCAAAATGAAACTTGACTGTTAAATTT
131 TCTTATTATCTTGATCAGTTTATTCCAATTTGGTAAAAGCAAAATGAAACTTGACTGTTAAATTT
* *
32459063 CAATCAAATAATTATATTTACTAGCTTCACCA-AAAAACAA
196 CAATCAAATAATTATATTTACAAGCATCACCACAAAAACAA
*
32459103 TTTTTTGTGTGTTTTTTATACTTTTCCAATGCTTTGACTGCTATTTGG-TTTTTTGCTTTGTAGA
1 TTTTTTGTGT-TTTTTTATACTTTTCCAATGCTTTGACTGCTATTTGGTTTTTTTGCTTCGTAGA
* * ** *
32459167 ACTTCTCTTTATGTTTAGAATAATAGCATTACACTTTTTCTTATAGAAAGGAA-TGTTTGTATGT
65 ACTT-ACATTATGTTTAGAATAATAGCAAGAAACTTTTTCTTATAGAAAGGAACT-TTTGTATGT
* *
32459231 ATTTCTTATTATCTTGATCGGTTTATTCCAATTTGGTAAAAGCAAATTGAAACTTGACTGTTAAA
128 ATTTCTTATTATCTTGATCAGTTTATTCCAATTTGGTAAAAGCAAAATGAAACTTGACTGTTAAA
*
32459296 TTTCAATCAAATAATTATATTTACAAGCATCACTACAAAAACAA
193 TTTCAATCAAATAATTATATTTACAAGCATCACCACAAAAACAA
32459340 T
1 T
32459341 GCAGGGATTA
Statistics
Matches: 219, Mismatches: 15, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
235 30 0.14
236 180 0.82
237 9 0.04
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (236 bp):
TTTTTTGTGTTTTTTTATACTTTTCCAATGCTTTGACTGCTATTTGGTTTTTTTGCTTCGTAGAA
CTTACATTATGTTTAGAATAATAGCAAGAAACTTTTTCTTATAGAAAGGAACTTTTGTATGTATT
TCTTATTATCTTGATCAGTTTATTCCAATTTGGTAAAAGCAAAATGAAACTTGACTGTTAAATTT
CAATCAAATAATTATATTTACAAGCATCACCACAAAAACAA
Found at i:32464345 original size:275 final size:272
Alignment explanation
Indices: 32463857--32464374 Score: 840
Period size: 275 Copynumber: 1.9 Consensus size: 272
32463847 AATGAGCTAC
*
32463857 TTACAGAATCACGTCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACCTTGCCAAG
1 TTACAGAATCACGTCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
* * * *
32463922 CATGATGCGGGTGAGTTCCATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCCTT
66 CATGATGCAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
** *
32463987 CTACAACGGTGAAGATGGTGAGTTATCAAAGCTTGAAGAAAACTCTTCATGGTTCTCCGGATACG
131 CTACAACGGTGAAGATGACGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGATACG
32464052 ATCGTTGCAATATTTAGATCACATCTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
196 ATCGTTGCAATATTTAGATCACATCTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
32464117 CTCACGTTTAAT
261 CTCACGTTTAAT
* *
32464129 TTACAGAATCATGTCTACCTAAAGAAGCAATACAACATACTTTTGATAATGTTGACATTGCCAAG
1 TTACAGAATCACGTCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
32464194 CATGATGCAGGTAAGTTCAATGATGCCAATGATACTGATCAGCAATGGCGACAAGTATTTGAACC
66 CATGATGCAGGTAAGTTCAATGATGCCAAT--T-CTGATCAGCAATGGCGACAAGTATTTGAACC
* * **
32464259 ATTTTATAGTGGTGAAGA-GCACGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGA
128 ATTCTACAACGGTGAAGATG-ACGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGA
* * *
32464323 TATGATCGTTGCAATATTTAGATCACGTTTAACTGCAGAATCATGTATGTAT
192 TACGATCGTTGCAATATTTAGATCACATCTAACTGCAGAATCATGTATGTAT
32464375 ACTAACAGTT
Statistics
Matches: 225, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
272 89 0.40
274 2 0.01
275 134 0.60
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30
Consensus pattern (272 bp):
TTACAGAATCACGTCTACCTAAAGAAGCAACACAACATACTTTTGATAATGTTGACATTGCCAAG
CATGATGCAGGTAAGTTCAATGATGCCAATTCTGATCAGCAATGGCGACAAGTATTTGAACCATT
CTACAACGGTGAAGATGACGAGTTATCAAAGCTTGAAGAAAACTCGTCATGGTTCTCCGGATACG
ATCGTTGCAATATTTAGATCACATCTAACTGCAGAATCATGTATGTATTATTAGTAACAGTTTCT
CTCACGTTTAAT
Found at i:32466152 original size:23 final size:23
Alignment explanation
Indices: 32466123--32466192 Score: 140
Period size: 23 Copynumber: 3.0 Consensus size: 23
32466113 TTAATGTCAA
32466123 ATAAAATATAATAGTAAATGAAT
1 ATAAAATATAATAGTAAATGAAT
32466146 ATAAAATATAATAGTAAATGAAT
1 ATAAAATATAATAGTAAATGAAT
32466169 ATAAAATATAATAGTAAATGAAT
1 ATAAAATATAATAGTAAATGAAT
32466192 A
1 A
32466193 AAATAAATGA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (23 bp):
ATAAAATATAATAGTAAATGAAT
Found at i:32466187 original size:12 final size:12
Alignment explanation
Indices: 32466126--32466187 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
32466116 ATGTCAAATA
32466126 AAATATAATAGT
1 AAATATAATAGT
*
32466138 AAAT-GAATA-T
1 AAATATAATAGT
32466148 AAAATATAATAGT
1 -AAATATAATAGT
*
32466161 AAAT-GAATA-T
1 AAATATAATAGT
32466171 AAAATATAATAGT
1 -AAATATAATAGT
32466184 AAAT
1 AAAT
32466188 GAATAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
10 2 0.05
11 16 0.40
12 20 0.50
13 2 0.05
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AAATATAATAGT
Found at i:32466567 original size:29 final size:27
Alignment explanation
Indices: 32466534--32466590 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 27
32466524 TTAAGTTTTT
32466534 AAAGAATATATTTCATTATATTAAAAAAA
1 AAAGAATATATTTCATTA-A-TAAAAAAA
32466563 AAAGAATATATTTCATTAATAAAAAAA
1 AAAGAATATATTTCATTAATAAAAAAA
32466590 A
1 A
32466591 TTATTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 9 0.32
28 1 0.04
29 18 0.64
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.32
Consensus pattern (27 bp):
AAAGAATATATTTCATTAATAAAAAAA
Found at i:32466850 original size:19 final size:21
Alignment explanation
Indices: 32466813--32466852 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32466803 AAGCAGGATT
32466813 CAATAATTTAAATTTTATCAA
1 CAATAATTTAAATTTTATCAA
32466834 CAATAATTT-AA-TTTATCAA
1 CAATAATTTAAATTTTATCAA
32466853 TTTAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (21 bp):
CAATAATTTAAATTTTATCAA
Found at i:32472696 original size:42 final size:42
Alignment explanation
Indices: 32472650--32472745 Score: 156
Period size: 42 Copynumber: 2.3 Consensus size: 42
32472640 AATTAAAAAT
*
32472650 AATATGGATGGGCCTAAAATGAGCTTGAGTTAGTCTTTTGCA
1 AATATGGATGGGACTAAAATGAGCTTGAGTTAGTCTTTTGCA
* *
32472692 AATATGGATGGGATTAAAATGGGCTTGAGTTAGTCTTTTGCA
1 AATATGGATGGGACTAAAATGAGCTTGAGTTAGTCTTTTGCA
*
32472734 AATATGGGTGGG
1 AATATGGATGGG
32472746 TTTGAGCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.28, C:0.08, G:0.30, T:0.33
Consensus pattern (42 bp):
AATATGGATGGGACTAAAATGAGCTTGAGTTAGTCTTTTGCA
Found at i:32474071 original size:25 final size:26
Alignment explanation
Indices: 32474014--32474075 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
32474004 ATAGAGTTTA
* * *
32474014 GCTCTTACGAGCCCAGACAGAATTTC
1 GCTCTTACGAGACCAAACAGAATATC
* *
32474040 ACACTTAC-AGACCAAACAGAATATC
1 GCTCTTACGAGACCAAACAGAATATC
32474065 GCTCTTACGAG
1 GCTCTTACGAG
32474076 CTAGAATTCA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (26 bp):
GCTCTTACGAGACCAAACAGAATATC
Found at i:32476880 original size:20 final size:20
Alignment explanation
Indices: 32476857--32476905 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
32476847 TTAGTTGTTC
32476857 CGGTAGAAGTATACTTGTAT
1 CGGTAGAAGTATACTTGTAT
* * *
32476877 CGGTAGAACTGTAGTTGTAT
1 CGGTAGAAGTATACTTGTAT
*
32476897 CAGTAGAAG
1 CGGTAGAAG
32476906 AGAAGTTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.29, T:0.31
Consensus pattern (20 bp):
CGGTAGAAGTATACTTGTAT
Found at i:32479172 original size:23 final size:22
Alignment explanation
Indices: 32479142--32479338 Score: 143
Period size: 23 Copynumber: 8.5 Consensus size: 22
32479132 ACACTAGCGC
32479142 GCTCTCTGTTTAGCAC-GTCTCGT
1 GCTCTCTGTTTAGCACTGT-T-GT
32479165 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-T-TTAGCACTGT-TGT
* *
32479190 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTGT-TGT
* *
32479213 GCTCTCTGATTAGCACTTTGTGT
1 GCTCTCTGTTTAGCACTGT-TGT
* *
32479236 GCTCTCTGATTAGTACT-TTGT
1 GCTCTCTGTTTAGCACTGTTGT
32479257 GTACTCTCTGTTTAGCACTGTGTGT
1 G--CTCTCTGTTTAGCACTGT-TGT
*
32479282 GCTCTCTGTTGCCCAGCACT-TATGT
1 GCTCTCTGTT---TAGCACTGT-TGT
*
32479307 GCTCTCTG-TTAGTACT-TTGGT
1 GCTCTCTGTTTAGCACTGTT-GT
*
32479328 ACTCTCTGTTT
1 GCTCTCTGTTT
32479339 GTTCCGCATA
Statistics
Matches: 151, Mismatches: 11, Indels: 25
0.81 0.06 0.13
Matches are distributed among these distances:
20 1 0.01
21 19 0.13
22 3 0.02
23 83 0.55
24 3 0.02
25 33 0.22
26 9 0.06
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (22 bp):
GCTCTCTGTTTAGCACTGTTGT
Found at i:32479179 original size:25 final size:24
Alignment explanation
Indices: 32479142--32479290 Score: 148
Period size: 23 Copynumber: 6.4 Consensus size: 24
32479132 ACACTAGCGC
32479142 GCTCTCTGT-TTAGCAC-GTCTCGT
1 GCTCTCTGTATTAGCACTGTCT-GT
*
32479165 GCTCTCTGTTATTAGCACTGTGTGT
1 GCTCTCTG-TATTAGCACTGTCTGT
* *
32479190 GCTCTCTG-ATTAGCACTTTGTGT
1 GCTCTCTGTATTAGCACTGTCTGT
* *
32479213 GCTCTCTG-ATTAGCACTTTGTGT
1 GCTCTCTGTATTAGCACTGTCTGT
* * *
32479236 GCTCTCTG-ATTAGTACTTTGTGT
1 GCTCTCTGTATTAGCACTGTCTGT
* *
32479259 ACTCTCTGT-TTAGCACTGTGTGT
1 GCTCTCTGTATTAGCACTGTCTGT
32479282 GCTCTCTGT
1 GCTCTCTGT
32479291 TGCCCAGCAC
Statistics
Matches: 115, Mismatches: 7, Indels: 8
0.88 0.05 0.06
Matches are distributed among these distances:
23 94 0.82
24 1 0.01
25 17 0.15
26 3 0.03
ACGTcount: A:0.11, C:0.23, G:0.22, T:0.44
Consensus pattern (24 bp):
GCTCTCTGTATTAGCACTGTCTGT
Found at i:32479242 original size:46 final size:46
Alignment explanation
Indices: 32479163--32479289 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
32479153 AGCACGTCTC
32479163 GTGCTCTCTGTTATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGT
1 GTGCTCTCTG--ATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGT
* *
32479211 GTGCTCTCTGATTAGCACTTTGTGTGCTCTCTGATTAGTACTTTGT
1 GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGT
* *
32479257 GTACTCTCTGTTTAGCACTGTGTGTGCTCTCTG
1 GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTG
32479290 TTGCCCAGCA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
46 64 0.86
48 10 0.14
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (46 bp):
GTGCTCTCTGATTAGCACTGTGTGTGCTCTCTGATTAGCACTTTGT
Found at i:32479281 original size:69 final size:68
Alignment explanation
Indices: 32479142--32479338 Score: 220
Period size: 69 Copynumber: 2.8 Consensus size: 68
32479132 ACACTAGCGC
* * * * * * *
32479142 GCTCTCTGTTTAGCACGTCTCGTGCTCTCTGTTATTAGCACTGTGTGTGCTCTCTGATTAGCACT
1 GCTCTCTGTTCAGCACTTAT-GTGCTCTCTG--ATTAGTACTTTGTGTACTCTCTGTTTAGCACT
*
32479207 TTGTGT
63 GTGTGT
*
32479213 GCTCTCTGATT-AGCACTTTGTGTGCTCTCTGATTAGTACTTTGTGTACTCTCTGTTTAGCACTG
1 GCTCTCTG-TTCAGCAC-TTATGTGCTCTCTGATTAGTACTTTGTGTACTCTCTGTTTAGCACTG
32479277 TGTGT
64 TGTGT
32479282 GCTCTCTGTTGCCCAGCACTTATGTGCTCTCTG-TTAGTACTTTG-GTACTCTCTGTTT
1 GCTCTCTGTT---CAGCACTTATGTGCTCTCTGATTAGTACTTTGTGTACTCTCTGTTT
32479339 GTTCCGCATA
Statistics
Matches: 112, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
68 2 0.02
69 54 0.48
70 11 0.10
71 36 0.32
72 9 0.08
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (68 bp):
GCTCTCTGTTCAGCACTTATGTGCTCTCTGATTAGTACTTTGTGTACTCTCTGTTTAGCACTGTG
TGT
Found at i:32480771 original size:27 final size:26
Alignment explanation
Indices: 32480741--32480885 Score: 89
Period size: 27 Copynumber: 5.4 Consensus size: 26
32480731 AGTCTACAAA
32480741 GACTATCTAATGTAGGAAGTCCGTAAG
1 GACTATCTAATGT-GGAAGTCCGTAAG
* * *
32480768 GACTATTTAACGTGGGAAGTCTGTAAG
1 GACTATCTAATGT-GGAAGTCCGTAAG
*** *
32480795 GA-TCATCTAATGTGGAAGTTTATGAG
1 GACT-ATCTAATGTGGAAGTCCGTAAG
* * *
32480821 TATTATCTAAAGTGTGCGAATTCCGTCAA-
1 GACTATCT-AA-TGTG-GAAGTCCGT-AAG
* *
32480850 GACTATCTTAA-GGGGAAGTCCATAAG
1 GACTATC-TAATGTGGAAGTCCGTAAG
32480876 GACTATCTAA
1 GACTATCTAA
32480886 CACGGAGAAA
Statistics
Matches: 90, Mismatches: 20, Indels: 18
0.70 0.16 0.14
Matches are distributed among these distances:
25 5 0.06
26 30 0.33
27 37 0.41
28 4 0.04
29 12 0.13
30 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (26 bp):
GACTATCTAATGTGGAAGTCCGTAAG
Found at i:32494576 original size:40 final size:40
Alignment explanation
Indices: 32494520--32494656 Score: 123
Period size: 40 Copynumber: 3.4 Consensus size: 40
32494510 GTAATATCGT
** *
32494520 AGTATCACTGTTAGTTCAATGATAGTATTGTAGTGTTTAC
1 AGTATCACTGCCAGTTCAATGATAATATTGTAGTGTTTAC
** * * *
32494560 AGTATCACTGCCAGTTCTGTAATAATATTGTAGCGTTTAT
1 AGTATCACTGCCAGTTCAATGATAATATTGTAGTGTTTAC
* * * *
32494600 AGTATCACTGTCGGTTCAATTG-TAATCTTGCAGTGTTTAC
1 AGTATCACTGCCAGTTCAA-TGATAATATTGTAGTGTTTAC
* * *
32494640 AATGTCACTGCAAGTTC
1 AGTATCACTGCCAGTTC
32494657 TGTAAATCCT
Statistics
Matches: 74, Mismatches: 22, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
40 73 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (40 bp):
AGTATCACTGCCAGTTCAATGATAATATTGTAGTGTTTAC
Found at i:32496759 original size:22 final size:23
Alignment explanation
Indices: 32496734--32496776 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
32496724 AATTTTTTTT
32496734 ATAAATTTGTA-TTATTATTTAA
1 ATAAATTTGTAGTTATTATTTAA
* *
32496756 ATAATTTTGTAGTTTTTATTT
1 ATAAATTTGTAGTTATTATTT
32496777 TGTTCACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (23 bp):
ATAAATTTGTAGTTATTATTTAA
Found at i:32496805 original size:17 final size:18
Alignment explanation
Indices: 32496785--32496833 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 18
32496775 TTTGTTCACT
32496785 TTTTATATATTTTTTA-A
1 TTTTATATATTTTTTACA
* *
32496802 TTTTATA-AATTTTAACA
1 TTTTATATATTTTTTACA
*
32496819 TTTTGTAT-TTTTTTA
1 TTTTATATATTTTTTA
32496834 ATAATTGTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATATATTTTTTACA
Found at i:32496858 original size:9 final size:9
Alignment explanation
Indices: 32496784--32496879 Score: 56
Period size: 9 Copynumber: 10.8 Consensus size: 9
32496774 TTTTGTTCAC
32496784 TTTTTATATA
1 TTTTT-TATA
32496794 TTTTTTA-A
1 TTTTTTATA
*
32496802 TTTTATA-A
1 TTTTTTATA
* * *
32496810 ATTTTAACA
1 TTTTTTATA
*
32496819 TTTTGTAT-
1 TTTTTTATA
32496827 TTTTTTAATA
1 TTTTTT-ATA
* * *
32496837 ATTGTAATA
1 TTTTTTATA
32496846 -TTTTTATA
1 TTTTTTATA
32496854 TTTTTTATAA
1 TTTTTTAT-A
32496864 TTTTTTATA
1 TTTTTTATA
*
32496873 ATTTTTA
1 TTTTTTA
32496880 CTCGCATTTA
Statistics
Matches: 66, Mismatches: 15, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
8 23 0.35
9 26 0.39
10 17 0.26
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTTATA
Found at i:32496868 original size:19 final size:20
Alignment explanation
Indices: 32496841--32496879 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
32496831 TTAATAATTG
*
32496841 TAATATTTTTATATTTTTTA
1 TAATATTTTTATAATTTTTA
32496861 TAAT-TTTTTATAATTTTTA
1 TAATATTTTTATAATTTTTA
32496880 CTCGCATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
TAATATTTTTATAATTTTTA
Found at i:32497382 original size:16 final size:16
Alignment explanation
Indices: 32497343--32497396 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
32497333 CAAGAGATAC
*
32497343 TTAAAATTATAAAA-T
1 TTAAATTTATAAAATT
* *
32497358 TTCAATTTA-AATATT
1 TTAAATTTATAAAATT
32497373 TTATAATTTATAAAATT
1 TTA-AATTTATAAAATT
32497390 TTAAATT
1 TTAAATT
32497397 CGTAATAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.10
15 10 0.32
16 10 0.32
17 8 0.26
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
TTAAATTTATAAAATT
Found at i:32499451 original size:25 final size:25
Alignment explanation
Indices: 32499417--32499467 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32499407 TTCTGTCTTC
32499417 TAACACCATATCATTCAAAAGGCAA
1 TAACACCATATCATTCAAAAGGCAA
32499442 TAACACCATATCATTCAAAAGGCAA
1 TAACACCATATCATTCAAAAGGCAA
32499467 T
1 T
32499468 CTTTATCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.24, G:0.08, T:0.22
Consensus pattern (25 bp):
TAACACCATATCATTCAAAAGGCAA
Found at i:32505785 original size:6 final size:6
Alignment explanation
Indices: 32505774--32505812 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
32505764 AGGAATGGCT
*
32505774 GGATGG GGATGG GGATGG GGATGG GGATAG GGATGG GGA
1 GGATGG GGATGG GGATGG GGATGG GGATGG GGATGG GGA
32505813 CAGTTGTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.21, C:0.00, G:0.64, T:0.15
Consensus pattern (6 bp):
GGATGG
Found at i:32507714 original size:18 final size:18
Alignment explanation
Indices: 32507676--32507714 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
32507666 GTGCGGGTTG
* *
32507676 TATTATATTTTTGTATTT
1 TATTATATTTTTATATAT
*
32507694 TATTTTATTTTTATATAT
1 TATTATATTTTTATATAT
32507712 TAT
1 TAT
32507715 ATAATTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (18 bp):
TATTATATTTTTATATAT
Found at i:32508369 original size:17 final size:17
Alignment explanation
Indices: 32508336--32508369 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32508326 TTTATAATAC
* *
32508336 TTTATATTATGTTATTT
1 TTTATATTATATAATTT
32508353 TTTATATTATATAATTT
1 TTTATATTATATAATTT
32508370 AGAACACATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTATATTATATAATTT
Found at i:32509012 original size:12 final size:12
Alignment explanation
Indices: 32508995--32509033 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32508985 AAATATAGAT
32508995 AAATTTAAATAA
1 AAATTTAAATAA
*
32509007 AAATTTAAACAA
1 AAATTTAAATAA
*
32509019 ATATTTTAAATAA
1 A-AATTTAAATAA
32509032 AA
1 AA
32509034 TAAATACACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 13 0.57
13 10 0.43
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (12 bp):
AAATTTAAATAA
Found at i:32514930 original size:15 final size:15
Alignment explanation
Indices: 32514908--32514941 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32514898 GGAAAACGAT
*
32514908 AAATTTTTTTTATTTA
1 AAATTTTTCTT-TTTA
32514924 AAATTTTTCTTTTTA
1 AAATTTTTCTTTTTA
32514939 AAA
1 AAA
32514942 AAATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
AAATTTTTCTTTTTA
Found at i:32515137 original size:2 final size:2
Alignment explanation
Indices: 32515130--32515162 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
32515120 TATTTGTAAT
32515130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
32515163 TAATTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32529377 original size:6 final size:6
Alignment explanation
Indices: 32529361--32529403 Score: 50
Period size: 6 Copynumber: 7.2 Consensus size: 6
32529351 GCTTCGGTGC
* * * *
32529361 TAGAGG AAGAGG TAGAGG AAGAGG AACAGG TAGAGG TAGAGG T
1 TAGAGG TAGAGG TAGAGG TAGAGG TAGAGG TAGAGG TAGAGG T
32529404 GGATATAGGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.40, C:0.02, G:0.47, T:0.12
Consensus pattern (6 bp):
TAGAGG
Found at i:32529385 original size:18 final size:18
Alignment explanation
Indices: 32529362--32529402 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
32529352 CTTCGGTGCT
*
32529362 AGAGGAAGAGGTAGAGGA
1 AGAGGAACAGGTAGAGGA
*
32529380 AGAGGAACAGGTAGAGGT
1 AGAGGAACAGGTAGAGGA
32529398 AGAGG
1 AGAGG
32529403 TGGATATAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.49, T:0.07
Consensus pattern (18 bp):
AGAGGAACAGGTAGAGGA
Found at i:32529403 original size:12 final size:12
Alignment explanation
Indices: 32529361--32529402 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
32529351 GCTTCGGTGC
32529361 TAGAGGAAGAGG
1 TAGAGGAAGAGG
32529373 TAGAGGAAGAGG
1 TAGAGGAAGAGG
* * *
32529385 AACAGGTAGAGG
1 TAGAGGAAGAGG
32529397 TAGAGG
1 TAGAGG
32529403 TGGATATAGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.40, C:0.02, G:0.48, T:0.10
Consensus pattern (12 bp):
TAGAGGAAGAGG
Found at i:32530134 original size:111 final size:111
Alignment explanation
Indices: 32529940--32530163 Score: 448
Period size: 111 Copynumber: 2.0 Consensus size: 111
32529930 TAGGTTGAAA
32529940 TGATAATCATTATTCATCAGCTCCACATTACTATTTTTCAGTGGAAAACAATAGAGATGATCCAT
1 TGATAATCATTATTCATCAGCTCCACATTACTATTTTTCAGTGGAAAACAATAGAGATGATCCAT
32530005 TAGGTGTGATCTAATCTAAATCCTGAGAACCCAAAACCTCTTTTGG
66 TAGGTGTGATCTAATCTAAATCCTGAGAACCCAAAACCTCTTTTGG
32530051 TGATAATCATTATTCATCAGCTCCACATTACTATTTTTCAGTGGAAAACAATAGAGATGATCCAT
1 TGATAATCATTATTCATCAGCTCCACATTACTATTTTTCAGTGGAAAACAATAGAGATGATCCAT
32530116 TAGGTGTGATCTAATCTAAATCCTGAGAACCCAAAACCTCTTTTGG
66 TAGGTGTGATCTAATCTAAATCCTGAGAACCCAAAACCTCTTTTGG
32530162 TG
1 TG
32530164 TTCTTATTGC
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
111 113 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (111 bp):
TGATAATCATTATTCATCAGCTCCACATTACTATTTTTCAGTGGAAAACAATAGAGATGATCCAT
TAGGTGTGATCTAATCTAAATCCTGAGAACCCAAAACCTCTTTTGG
Found at i:32535164 original size:28 final size:29
Alignment explanation
Indices: 32535086--32535166 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 29
32535076 AAAAACTTCA
*
32535086 TTTAAGAGGTTCACCATAAAGACTTACCAT
1 TTTAAGAGGTTCACCATAAAG-GTTACCAT
* * ** * **
32535116 TTTTAGAGTTTTGCCACAAAGGTTTTC-T
1 TTTAAGAGGTTCACCATAAAGGTTACCAT
32535144 TTTAAGAGGTTCACCATAAAGGT
1 TTTAAGAGGTTCACCATAAAGGT
32535167 GTATTGTTCT
Statistics
Matches: 38, Mismatches: 13, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
28 19 0.50
29 3 0.08
30 16 0.42
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (29 bp):
TTTAAGAGGTTCACCATAAAGGTTACCAT
Found at i:32538859 original size:11 final size:11
Alignment explanation
Indices: 32538845--32538887 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
32538835 ATATGCGTTC
*
32538845 AATACACAATA
1 AATACATAATA
32538856 AAT--ATAATA
1 AATACATAATA
32538865 AATACATAATA
1 AATACATAATA
32538876 AATA-ATAATA
1 AATACATAATA
32538886 AA
1 AA
32538888 AAGGGAAGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
9 8 0.28
10 8 0.28
11 13 0.45
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (11 bp):
AATACATAATA
Found at i:32538870 original size:20 final size:21
Alignment explanation
Indices: 32538845--32538887 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
32538835 ATATGCGTTC
32538845 AATACACAATAAAT-ATAATA
1 AATACACAATAAATAATAATA
*
32538865 AATACATAATAAATAATAATA
1 AATACACAATAAATAATAATA
32538886 AA
1 AA
32538888 AAGGGAAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (21 bp):
AATACACAATAAATAATAATA
Found at i:32540210 original size:29 final size:28
Alignment explanation
Indices: 32539940--32540208 Score: 205
Period size: 30 Copynumber: 9.1 Consensus size: 28
32539930 CCCCCAAACC
* * *
32539940 TTTCAAAAATTATATTTTGACTCTCAAAAT
1 TTTCCAAAATTACATTTTGAC-C-CTAAAT
* *
32539970 TTTCCAAAATTACATTTTGACCCCAAACA
1 TTTCCAAAATTACATTTTGACCCTAAA-T
* *
32539999 TTTCCAAAATTATATTTCGACCCTCAAAT
1 TTTCCAAAATTACATTTTGACCCT-AAAT
* *
32540028 TTTCTAAAATTACATTTTAATCCCTAAACT
1 TTTCCAAAATTACATTTTGA-CCCTAAA-T
** * *
32540058 TTTCCAAAAGCACATTTTAACCCTTAAAC
1 TTTCCAAAATTACATTTTGACCC-TAAAT
* * *
32540087 TTTCTCAAAATCACATTTTAACTCCTAAACC
1 TTTC-CAAAATTACATTTTGAC-CCTAAA-T
* * * *
32540118 TTTCCAAAATCATATTTTGATCCTAAACA
1 TTTCCAAAATTACATTTTGACCCTAAA-T
*
32540147 TTTCCTAAAATTACGTTTTGACCCCATAAAT
1 TTTCC-AAAATTACATTTTGA-CCC-TAAAT
* *
32540178 TTTCCAAAATTACATTTTCACCCAAAAT
1 TTTCCAAAATTACATTTTGACCCTAAAT
32540206 TTT
1 TTT
32540209 TCGAAACTTC
Statistics
Matches: 199, Mismatches: 29, Indels: 24
0.79 0.12 0.10
Matches are distributed among these distances:
28 11 0.06
29 63 0.32
30 107 0.54
31 14 0.07
32 4 0.02
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (28 bp):
TTTCCAAAATTACATTTTGACCCTAAAT
Found at i:32542108 original size:12 final size:12
Alignment explanation
Indices: 32542091--32542118 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32542081 ATCCAAAGAG
32542091 AGATGCAAGAAT
1 AGATGCAAGAAT
32542103 AGATGCAAGAAT
1 AGATGCAAGAAT
32542115 AGAT
1 AGAT
32542119 AACAAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.25, T:0.18
Consensus pattern (12 bp):
AGATGCAAGAAT
Found at i:32548280 original size:50 final size:50
Alignment explanation
Indices: 32548222--32548814 Score: 517
Period size: 50 Copynumber: 11.9 Consensus size: 50
32548212 AATATATGAA
*
32548222 GGGAAAGGTTGAGGCCACAACGATGAACTCGGTACCTTAGAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
** * * * *
32548272 GGGAAAGGTTGAGGCCGCAACGGCGAACCCGGTACCAT-GAAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
* * * * *
32548321 GGGAAATGTTGAGGCCACAACGGCT-AACCCGGTATCCTTAAAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAAC-GATGAACTCGGTA-CCTTAGAAGATGTGAT
* * * *
32548372 GGGAAAGGTTGAGGCCGCAACAACGAACTCGGTACCAT-GAAGATAT-AT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
* * **
32548420 GAAAGGAAAGGTTGAGACCGTAACGGCGAACTCGGTACCTTAGAAGATGTGAT
1 G---GGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
*** * * *
32548473 GGGAAAGGTTGAGGCATTAACAATGAACTTGATACCTTAGAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
** * *
32548523 GGGAAAGGTTGAGGCCGCAAC-A-GCAAACTCAATACCTTAAAAGATGTAAT
1 GGGAAAGGTTGAGGCCGCAACGATG--AACTCGGTACCTTAGAAGATGTGAT
* * * * * *
32548573 GGAAAAGGTTGAGGCCGCAACGGTGAAC-CTAGTACCAT-GAAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGATGAACTC-GGTACCTTAGAAGATGTGAT
* *
32548622 GGGAAAGGTTGAGGCCGCAATGACGAAC-CTGGTACCTTAGAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTC-GGTACCTTAGAAGATGTGAT
* *** * * * *
32548672 GGGAAAGGTTGAGGCCACAACGGCAAACCCGGTACCAT-GAAGATATGAA
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
* * * * * *
32548721 GGGAAAGGTTGAGGCTGTAACGGTGCACTCGATACCTTAAAAGATGTGAT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
* * *
32548771 GGGAAAGGTTGAAGCCGTAACGATGAAC-CTGGTACCATA-AAGAT
1 GGGAAAGGTTGAGGCCGCAACGATGAACTC-GGTACCTTAGAAGAT
32548815 ATAAAAGGAA
Statistics
Matches: 439, Mismatches: 86, Indels: 37
0.78 0.15 0.07
Matches are distributed among these distances:
48 4 0.01
49 128 0.29
50 228 0.52
51 68 0.15
52 8 0.02
53 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (50 bp):
GGGAAAGGTTGAGGCCGCAACGATGAACTCGGTACCTTAGAAGATGTGAT
Found at i:32548658 original size:99 final size:100
Alignment explanation
Indices: 32548215--32548958 Score: 736
Period size: 99 Copynumber: 7.5 Consensus size: 100
32548205 TACCCTAAAT
* * *
32548215 ATATGAAGGGAAAGGTTGAGGCCACAACGATGAA-CTCGGTACCTTAGAAGATGTGATGGGAAAG
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAAAG
*
32548279 GTTGAGGCCGCAACGGCGAACCCGGTACCATGAAG
66 GTTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
* * * *
32548314 ATATGAAGGGAAATGTTGAGGCCACAACGGCTAACC-CGGTATCCTTAAAAGATGTGATGGGAAA
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTA-CCTTAAAAGATGTGATGGGAAA
**
32548378 GGTTGAGGCCGCAACAACGAA-CTCGGTACCATGAAG
65 GGTTGAGGCCGCAACGGCGAACCT-GGTACCATGAAG
* * * * *
32548414 ATATATGAAAGGAAAGGTTGAGACCGTAACGGCGAA-CTCGGTACCTTAGAAGATGTGATGGGAA
1 --ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAA
*** *** * * *
32548478 AGGTTGAGGCATTAACAATGAACTTGATACCTTAGAAG
64 AGGTTGAGGCCGCAACGGCGAACCTGGTACCAT-GAAG
* * * ** * *
32548516 ATGTGATGGGAAAGGTTGAGGCCGCAAC-A-GCAAACTCAATACCTTAAAAGATGTAATGGAAAA
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACG-AACCTCGGTACCTTAAAAGATGTGATGGGAAA
* *
32548579 GGTTGAGGCCGCAACGGTGAACCTAGTACCATGAAG
65 GGTTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
* *
32548615 ATATGAAGGGAAAGGTTGAGGCCGCAATGACGAACCT-GGTACCTTAGAAGATGTGATGGGAAAG
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAAAG
* * *
32548679 GTTGAGGCCACAACGGCAAACCCGGTACCATGAAG
66 GTTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
* * ** * *
32548714 ATATGAAGGGAAAGGTTGAGGCTGTAACGGTGCA-CTCGATACCTTAAAAGATGTGATGGGAAAG
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAAAG
* * ** *
32548778 GTTGAAGCCGTAACGATGAACCTGGTACCATAAAG
66 GTTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
* * * ** * ** ** *
32548813 ATATAAAAGGAAAGGTTAAGGTTGCAACGACAAACC-CAATATTTTAAAAGATGTGATAGG-AAG
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAAAG
* * * * *
32548876 GATTGAGACCGCAATGGCGAATCTGGCATCATGAAG
66 G-TTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
* * *
32548912 ATATGAAGGGAAATGTTGAGGCCGAAACGACGAACC-CAGTACCTTAA
1 ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAA
32548959 GAAAACATGA
Statistics
Matches: 524, Mismatches: 106, Indels: 30
0.79 0.16 0.05
Matches are distributed among these distances:
98 7 0.01
99 304 0.58
100 129 0.25
101 46 0.09
102 38 0.07
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (100 bp):
ATATGAAGGGAAAGGTTGAGGCCGCAACGACGAACCTCGGTACCTTAAAAGATGTGATGGGAAAG
GTTGAGGCCGCAACGGCGAACCTGGTACCATGAAG
Found at i:32549031 original size:40 final size:40
Alignment explanation
Indices: 32548987--32549179 Score: 175
Period size: 40 Copynumber: 4.9 Consensus size: 40
32548977 ATTAGAGCAT
*
32548987 CCAATCTTTTACCCTAGTCAGAGGGTAGATTGAAGACACA
1 CCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACA
* *
32549027 CCAATCTCTTACCCT-GATCATG-GGGCAGATTGAAGA-A-T
1 CCAATCTTTTACCCTAG-TCA-GAGGGCAGATTGAAGACACA
*
32549065 CCAATCTTTTACCCTAGTTAGAGGGCAGATTGAAGACACA
1 CCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACA
* * * * * *
32549105 CCAATCTCTTA-GCTCGATCATGCGAGCAGATTGAAG-CA-T
1 CCAATCTTTTACCCTAG-TCA-GAGGGCAGATTGAAGACACA
* * * *
32549144 CCAATATCTTACCCTAATCAGAGGGCATATTGAAGA
1 CCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGA
32549180 TATCTTTCAA
Statistics
Matches: 123, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
37 1 0.01
38 42 0.34
39 20 0.16
40 46 0.37
41 14 0.11
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (40 bp):
CCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACA
Found at i:32549078 original size:38 final size:38
Alignment explanation
Indices: 32548984--32549179 Score: 182
Period size: 38 Copynumber: 5.0 Consensus size: 38
32548974 AAGATTAGAG
* *
32548984 CATCCAATCTTTTACCCTAGTCAGAGGGTAGATTGAAGA
1 CATCCAATCTCTTACCCTA-TCAGAGGGCAGATTGAAGA
*
32549023 CACACCAATCTCTTACCCTGATCATG-GGGCAGATTGAAGA
1 CA-TCCAATCTCTTACCCT-ATCA-GAGGGCAGATTGAAGA
* *
32549063 -ATCCAATCTTTTACCCTAGTTAGAGGGCAGATTGAAGA
1 CATCCAATCTCTTACCCTA-TCAGAGGGCAGATTGAAGA
* * * * *
32549101 CACACCAATCTCTTAGCTCGATCATGCGAGCAGATTGAAG-
1 CA-TCCAATCTCTTA-CCCTATCA-GAGGGCAGATTGAAGA
* *
32549141 CATCCAATATCTTACCCTAATCAGAGGGCATATTGAAGA
1 CATCCAATCTCTTACCCT-ATCAGAGGGCAGATTGAAGA
32549180 TATCTTTCAA
Statistics
Matches: 126, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
37 2 0.02
38 44 0.35
39 18 0.14
40 44 0.35
41 18 0.14
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (38 bp):
CATCCAATCTCTTACCCTATCAGAGGGCAGATTGAAGA
Found at i:32549168 original size:79 final size:78
Alignment explanation
Indices: 32548982--32549179 Score: 290
Period size: 78 Copynumber: 2.5 Consensus size: 78
32548972 GAAAGATTAG
*
32548982 AGCATCCAATCTTTTACCCTAGTCAGAGGGTAGATTGAAGACACACCAATCTCTTACCCTGATCA
1 AGCATCCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCTGATCA
*
32549047 TGGGGCAGATTGA
66 TGGAGCAGATTGA
* * *
32549060 AGAATCCAATCTTTTACCCTAGTTAGAGGGCAGATTGAAGACACACCAATCTCTTA-GCTCGATC
1 AGCATCCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCT-GATC
32549124 ATGCGAGCAGATTGA
65 ATG-GAGCAGATTGA
* * * *
32549139 AGCATCCAATATCTTACCCTAATCAGAGGGCATATTGAAGA
1 AGCATCCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGA
32549180 TATCTTTCAA
Statistics
Matches: 107, Mismatches: 11, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
77 2 0.02
78 60 0.56
79 45 0.42
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (78 bp):
AGCATCCAATCTTTTACCCTAGTCAGAGGGCAGATTGAAGACACACCAATCTCTTACCCTGATCA
TGGAGCAGATTGA
Found at i:32550150 original size:13 final size:13
Alignment explanation
Indices: 32550132--32550179 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
32550122 ATATATATAT
32550132 TTATATTTGTTAA
1 TTATATTTGTTAA
* *
32550145 TTATATTATATATAT
1 TTATATT-TGT-TAA
32550160 TTATATTTGTTAA
1 TTATATTTGTTAA
32550173 TTATATT
1 TTATATT
32550180 CCAATAGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 16 0.55
14 4 0.14
15 9 0.31
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (13 bp):
TTATATTTGTTAA
Found at i:32550154 original size:28 final size:28
Alignment explanation
Indices: 32550117--32550179 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
32550107 TATTCATATA
32550117 TATATATATATATATTTATATTTGTTAAT
1 TATAT-TATATATATTTATATTTGTTAAT
32550146 TATATTATATATATTTATATTTGTTAAT
1 TATATTATATATATTTATATTTGTTAAT
32550174 TATATT
1 TATATT
32550180 CCAATAGTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 29 0.85
29 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (28 bp):
TATATTATATATATTTATATTTGTTAAT
Found at i:32551242 original size:30 final size:29
Alignment explanation
Indices: 32551201--32551431 Score: 169
Period size: 30 Copynumber: 7.8 Consensus size: 29
32551191 ATTTTACTTA
* *
32551201 AAAATTTCATTTTTACCACTAAAGC-TTTCC
1 AAAATTACATTTTAACC-CTAAA-CTTTTCC
* *
32551231 AAAATTGCATTTTAACCCCCAAACTTTTCC
1 AAAATTACATTTTAA-CCCTAAACTTTTCC
*
32551261 AAAATTACATTTTGACCCTTAAACTTTTCC
1 AAAATTACATTTTAACCC-TAAACTTTTCC
** *
32551291 AAAAGCACATTTTAACCCTCAAACTTTCCC
1 AAAATTACATTTTAACCCT-AAACTTTTCC
* * * *
32551321 AACATCACATTTTGACTCC-AAACCTTTCC
1 AAAATTACATTTTAAC-CCTAAACTTTTCC
* * * * *
32551350 AAAATCATATTTTAACCCCAAACATTTCTT
1 AAAATTACATTTTAACCCTAAACTTTTC-C
* * * **
32551380 AGAATTACGTTTTAACCCCTAAAATTTTTT
1 AAAATTACATTTTAA-CCCTAAACTTTTCC
*
32551410 AAAATTACATTTTAACCTTAAA
1 AAAATTACATTTTAACCCTAAA
32551432 TTCTTTGAAA
Statistics
Matches: 162, Mismatches: 31, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
28 2 0.01
29 40 0.25
30 107 0.66
31 13 0.08
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (29 bp):
AAAATTACATTTTAACCCTAAACTTTTCC
Found at i:32551294 original size:60 final size:59
Alignment explanation
Indices: 32551201--32551426 Score: 197
Period size: 60 Copynumber: 3.8 Consensus size: 59
32551191 ATTTTACTTA
* * **
32551201 AAAATTTCATTTTTACCACTAAAGC-TTTCCAAAATTGCATTTTAACCCCCAAACTTTTCC
1 AAAATTACATTTTGACC-CTAAA-CTTTTCCAAAATCACATTTTAACCCCCAAACTTTTCC
* * *
32551261 AAAATTACATTTTGACCCTTAAACTTTTCCAAAAGCACATTTTAACCCTCAAACTTTCCC
1 AAAATTACATTTTGACCC-TAAACTTTTCCAAAATCACATTTTAACCCCCAAACTTTTCC
* * * * * *
32551321 AACATCACATTTTGACTCC-AAACCTTTCCAAAATCATATTTTAA-CCCCAAACATTTCTT
1 AAAATTACATTTTGAC-CCTAAACTTTTCCAAAATCACATTTTAACCCCCAAACTTTTC-C
* * * * ** *
32551380 AGAATTACGTTTTAACCCCTAAAATTTTTTAAAATTACATTTTAACC
1 AAAATTACATTTTGA-CCCTAAACTTTTCCAAAATCACATTTTAACC
32551427 TTAAATTCTT
Statistics
Matches: 132, Mismatches: 27, Indels: 13
0.77 0.16 0.08
Matches are distributed among these distances:
58 10 0.08
59 36 0.27
60 83 0.63
61 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.36
Consensus pattern (59 bp):
AAAATTACATTTTGACCCTAAACTTTTCCAAAATCACATTTTAACCCCCAAACTTTTCC
Found at i:32559673 original size:21 final size:22
Alignment explanation
Indices: 32559632--32559673 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
32559622 TAAATATTAG
*
32559632 ATTAAACTTAATATTAAATTTT
1 ATTAAACTTAATATGAAATTTT
32559654 ATTAAA-TTAATA-GAATATTT
1 ATTAAACTTAATATGAA-ATTT
32559674 ATCTACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
ATTAAACTTAATATGAAATTTT
Found at i:32560060 original size:24 final size:23
Alignment explanation
Indices: 32560032--32560099 Score: 68
Period size: 24 Copynumber: 3.0 Consensus size: 23
32560022 AGAACCAACT
32560032 AAACAAGAAGCAAAAAGAAAGAA
1 AAACAAGAAGCAAAAAGAAAGAA
* **
32560055 GAAACAAGGAGGGAAAAGAAAG-A
1 -AAACAAGAAGCAAAAAGAAAGAA
*
32560078 ATACAA-AAGACAAAAAGAAAGA
1 AAACAAGAAG-CAAAAAGAAAGA
32560100 TTTAAAAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
21 2 0.06
22 14 0.40
23 1 0.03
24 18 0.51
ACGTcount: A:0.69, C:0.07, G:0.22, T:0.01
Consensus pattern (23 bp):
AAACAAGAAGCAAAAAGAAAGAA
Found at i:32564345 original size:88 final size:86
Alignment explanation
Indices: 32564236--32564418 Score: 267
Period size: 88 Copynumber: 2.1 Consensus size: 86
32564226 AGTCATATGT
*
32564236 TCTTCCATTTACAAATAATCTTATGCTCTAACCGAGACATAAGTTCTTCCATTTACAGAAAAATA
1 TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAG-TCTTCCATTTACA-AAAAATA
*
32564301 TTACGCTCTAGCCGAGACATAAA
64 TTACGCTCTAACCGAGACATAAA
* * * * *
32564324 TCTTCCATTTATAAACAATCTTATGCTCTAACCGAGGCATAAGTCTTCCATTTATAAACAATCTT
1 TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAAAAATATT
* *
32564389 ATGCTCTAACCGAGACATAAG
66 ACGCTCTAACCGAGACATAAA
32564410 TCTTCCATT
1 TCTTCCATT
32564419 AAGAATTCAC
Statistics
Matches: 86, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 34 0.40
87 12 0.14
88 40 0.47
ACGTcount: A:0.34, C:0.23, G:0.10, T:0.33
Consensus pattern (86 bp):
TCTTCCATTTACAAACAATCTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAAAAATATT
ACGCTCTAACCGAGACATAAA
Found at i:32564359 original size:43 final size:43
Alignment explanation
Indices: 32564211--32564418 Score: 281
Period size: 43 Copynumber: 4.8 Consensus size: 43
32564201 TTGAATTAAC
* * * *
32564211 CTTATGCTCTATCCGAGTCATATGTTCTTCCATTTACAAATAAT
1 CTTATGCTCTAACCGAGACATAAG-TCTTCCATTTACAAACAAT
*
32564255 CTTATGCTCTAACCGAGACATAAGTTCTTCCATTTACAGAAAAAT
1 CTTATGCTCTAACCGAGACATAAG-TCTTCCATTTACA-AACAAT
* * * * *
32564300 ATTACGCTCTAGCCGAGACATAAATCTTCCATTTATAAACAAT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
* *
32564343 CTTATGCTCTAACCGAGGCATAAGTCTTCCATTTATAAACAAT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
32564386 CTTATGCTCTAACCGAGACATAAGTCTTCCATT
1 CTTATGCTCTAACCGAGACATAAGTCTTCCATT
32564419 AAGAATTCAC
Statistics
Matches: 147, Mismatches: 16, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
43 75 0.51
44 47 0.32
45 25 0.17
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (43 bp):
CTTATGCTCTAACCGAGACATAAGTCTTCCATTTACAAACAAT
Found at i:32573828 original size:18 final size:18
Alignment explanation
Indices: 32573805--32573839 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32573795 TAAAAATGTA
32573805 TTTAATATATATTAAAAT
1 TTTAATATATATTAAAAT
*
32573823 TTTAATATTTATTAAAA
1 TTTAATATATATTAAAA
32573840 ATAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTAATATATATTAAAAT
Found at i:32573832 original size:25 final size:24
Alignment explanation
Indices: 32573803--32573850 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
32573793 TATAAAAATG
* *
32573803 TATTTAATATATATTAAAATTTTAA
1 TATTTAATA-AAAATAAAATTTTAA
*
32573828 TATTTATTAAAAATAAAATTTTA
1 TATTTAATAAAAATAAAATTTTA
32573851 TATCATTCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TATTTAATAAAAATAAAATTTTAA
Found at i:32582819 original size:15 final size:16
Alignment explanation
Indices: 32582799--32582829 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32582789 GTATTTGAAT
32582799 TAATAAATGA-ATAAG
1 TAATAAATGACATAAG
32582814 TAATAAATGACATAAG
1 TAATAAATGACATAAG
32582830 GATAATAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.13, T:0.26
Consensus pattern (16 bp):
TAATAAATGACATAAG
Found at i:32590767 original size:26 final size:28
Alignment explanation
Indices: 32590727--32590778 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
32590717 AGCCTACAGT
*
32590727 GTTCACACATATAGGTTTCGCACATAGG
1 GTTCACACATATAGGGTTCGCACATAGG
*
32590755 GTTCAC-C-TATAGGGTTCGTACATA
1 GTTCACACATATAGGGTTCGCACATA
32590779 CAGGGTTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.68
27 1 0.05
28 6 0.27
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (28 bp):
GTTCACACATATAGGGTTCGCACATAGG
Found at i:32590778 original size:41 final size:42
Alignment explanation
Indices: 32590702--32590801 Score: 116
Period size: 41 Copynumber: 2.4 Consensus size: 42
32590692 GCATTCAAGG
* * *
32590702 TTCGCACATATGGTT-AGCCTACAGTGTTCACACATATA-GGT
1 TTCGCACATAGGGTTCA-CCTACAGGGTTCACACATACAGGGT
* **
32590743 TTCGCACATAGGGTTCACCTATAGGGTTCGTACATACAGGGT
1 TTCGCACATAGGGTTCACCTACAGGGTTCACACATACAGGGT
32590785 TT-GCACATAGGGTTCAC
1 TTCGCACATAGGGTTCAC
32590802 ACATGTAGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
41 45 0.88
42 6 0.12
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (42 bp):
TTCGCACATAGGGTTCACCTACAGGGTTCACACATACAGGGT
Found at i:32590804 original size:13 final size:13
Alignment explanation
Indices: 32590727--32590815 Score: 54
Period size: 13 Copynumber: 6.4 Consensus size: 13
32590717 AGCCTACAGT
32590727 GTTCACACATATAGG
1 GTTCACAC--ATAGG
* *
32590742 TTTCGCACATAGG
1 GTTCACACATAGG
32590755 GTTCAC-CTATAGG
1 GTTCACAC-ATAGG
* *
32590768 GTTCGTACATACAGG
1 GTTC--ACACATAGG
**
32590783 GTTTGCACATAGG
1 GTTCACACATAGG
32590796 GTTCACACATGTAGG
1 GTTCACACA--TAGG
32590811 GTTCA
1 GTTCA
32590816 TATGTATAAA
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
12 1 0.02
13 31 0.55
15 24 0.43
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (13 bp):
GTTCACACATAGG
Found at i:32591596 original size:17 final size:17
Alignment explanation
Indices: 32591571--32591613 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
32591561 TAAATAGGAT
32591571 TTAAGGATTCATTTAGAA
1 TTAAGGATTCATTT-GAA
*
32591589 TT-AGGATTGATTTGAA
1 TTAAGGATTCATTTGAA
32591605 TTAAGGATT
1 TTAAGGATT
32591614 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 5 0.22
17 16 0.70
18 2 0.09
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (17 bp):
TTAAGGATTCATTTGAA
Found at i:32593470 original size:17 final size:17
Alignment explanation
Indices: 32593445--32593508 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
32593435 CAGGCCCAAT
*
32593445 AAATTTAAATTTATTTT
1 AAATTTAAATTTATTTG
** *
32593462 AGGTTTAAATTCATTTG
1 AAATTTAAATTTATTTG
32593479 AAATTTAAATTTATTAT-
1 AAATTTAAATTTATT-TG
*
32593496 AAATTTAAGTTTA
1 AAATTTAAATTTA
32593509 AATTTATTTA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
17 37 0.97
18 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (17 bp):
AAATTTAAATTTATTTG
Found at i:32593498 original size:11 final size:10
Alignment explanation
Indices: 32593481--32593522 Score: 57
Period size: 10 Copynumber: 3.9 Consensus size: 10
32593471 TTCATTTGAA
32593481 ATTTAAATTT
1 ATTTAAATTT
32593491 ATTATAAATTT
1 ATT-TAAATTT
32593502 AAGTTTAAATTT
1 -A-TTTAAATTT
32593514 ATTTAAATT
1 ATTTAAATT
32593523 AAAAAGTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 11 0.38
11 8 0.28
12 8 0.28
13 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:32593534 original size:24 final size:23
Alignment explanation
Indices: 32593484--32593534 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
32593474 ATTTGAAATT
* *
32593484 TAAATTTATTATAAATTTAAGTT
1 TAAATTTATTATAAATTAAAGTC
32593507 TAAATTTATT-TAAATTAAAAAGTC
1 TAAATTTATTATAAATT--AAAGTC
32593531 TAAA
1 TAAA
32593535 ATTACAAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 6 0.25
23 10 0.42
24 8 0.33
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (23 bp):
TAAATTTATTATAAATTAAAGTC
Found at i:32595532 original size:29 final size:30
Alignment explanation
Indices: 32595385--32595756 Score: 188
Period size: 30 Copynumber: 12.7 Consensus size: 30
32595375 CAGAACTGTC
* * *
32595385 CAAAAACTATATTTTGACCCCCAAACTTTT
1 CAAAAATTACATTTTGACCCTCAAACTTTT
* * * *
32595415 TAAAAATTACATTTCGACTCC-AAAACTTTA
1 CAAAAATTACATTTTGAC-CCTCAAACTTTT
32595445 CAAAAATTACATTTTTGA-CCTCAAACTTTT
1 CAAAAATTACA-TTTTGACCCTCAAACTTTT
32595475 CAAAAATTATCATTTT-ACCCTCAAA--TTT
1 CAAAAATTA-CATTTTGACCCTCAAACTTTT
* *
32595503 CCAAAATTACATTTTAACCCT-AAACTTTT
1 CAAAAATTACATTTTGACCCTCAAACTTTT
* * ** *
32595532 CCAAAATTACCATTGT-ACCCTTGAAC-TTC
1 CAAAAATTA-CATTTTGACCCTCAAACTTTT
**
32595561 CAAAAATTTTATTTTTGACCC-CAAA-TTTT
1 CAAAAATTACA-TTTTGACCCTCAAACTTTT
* * *
32595590 CCAAAAATCACCATTTTGTCCC-CAAAC-TTC
1 -CAAAAATTA-CATTTTGACCCTCAAACTTTT
* * *
32595620 CAAGAAA-TCCATTTTTGACCC-CGAACTTTC
1 CAA-AAATTACA-TTTTGACCCTCAAACTTTT
* * * *
32595650 CCAAAATTACCATTTT--CTCTTAGA-TTTT
1 CAAAAATTA-CATTTTGACCCTCAAACTTTT
* * * *
32595678 CAAAAATTTCATTTTTAACCTCAAACTTTC
1 CAAAAATTACATTTTGACCCTCAAACTTTT
* * * *
32595708 CAAAAATCACCATTTT-ACCCTCGAA-TATC
1 CAAAAATTA-CATTTTGACCCTCAAACTTTT
* *
32595737 CAAATATTTCATTTTGACCC
1 CAAAAATTACATTTTGACCC
32595757 CGAGCGTCCA
Statistics
Matches: 263, Mismatches: 52, Indels: 55
0.71 0.14 0.15
Matches are distributed among these distances:
27 15 0.06
28 37 0.14
29 72 0.27
30 121 0.46
31 18 0.07
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.36
Consensus pattern (30 bp):
CAAAAATTACATTTTGACCCTCAAACTTTT
Found at i:32595537 original size:58 final size:59
Alignment explanation
Indices: 32595447--32595756 Score: 246
Period size: 59 Copynumber: 5.3 Consensus size: 59
32595437 AAACTTTACA
* *
32595447 AAAATTACATTTTTGA-CCTCAAACTTTT-CAAAAATTATCATTTTACCCTCAAATTTCC
1 AAAATTTCATTTTTGACCCT-AAACTTTTCCAAAAATTACCATTTTACCCTCAAATTTCC
* * * ** *
32595505 AAAATTACA-TTTTAACCCTAAACTTTTCC-AAAATTACCATTGTACCCTTGAACTTCC
1 AAAATTTCATTTTTGACCCTAAACTTTTCCAAAAATTACCATTTTACCCTCAAATTTCC
* * * * *
32595562 AAAAATTTTATTTTTGACCCCAAA-TTTTCCAAAAATCACCATTTTGTCCC-CAAACTTCC
1 -AAAATTTCATTTTTGACCCTAAACTTTTCCAAAAATTACCATTTT-ACCCTCAAATTTCC
* * ** * * * * *
32595621 AAGAAATCCATTTTTGACCCCGAAC-TTTCCCAAAATTACCATTTT-CTCTTAGATTTTCA
1 AA-AATTTCATTTTTGACCCTAAACTTTTCCAAAAATTACCATTTTACCCTCA-AATTTCC
* * * *
32595680 AAAATTTCATTTTT-AACCTCAAAC-TTTCCAAAAATCACCATTTTACCCTCGAATATCC
1 AAAATTTCATTTTTGACCCT-AAACTTTTCCAAAAATTACCATTTTACCCTCAAATTTCC
32595738 AAATATTTCA-TTTTGACCC
1 AAA-ATTTCATTTTTGACCC
32595757 CGAGCGTCCA
Statistics
Matches: 198, Mismatches: 40, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
57 41 0.21
58 71 0.36
59 83 0.42
60 3 0.02
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.37
Consensus pattern (59 bp):
AAAATTTCATTTTTGACCCTAAACTTTTCCAAAAATTACCATTTTACCCTCAAATTTCC
Found at i:32595634 original size:59 final size:58
Alignment explanation
Indices: 32595396--32595723 Score: 202
Period size: 59 Copynumber: 5.6 Consensus size: 58
32595386 AAAAACTATA
** * * * * *
32595396 TTTTGACCCCCAAACTTTTTAAAAATTA-CATTTCGACTCCAAAACTTTACAAAAATTACAT
1 TTTTGA-CCCCAAACTTTCCAAAAATCACCATTT--TCTCCCAAAC-TTCCAAAAATTCCAT
* * * * * *
32595457 TTTTGACCTCAAACTTTTCAAAAATTATCATTTTAC-CCTCAAATTTCC-AAAATTACA-
1 TTTTGACCCCAAACTTTCCAAAAATCACCATTTT-CTCC-CAAACTTCCAAAAATTCCAT
* * * * ** **
32595514 TTTTAACCCTAAACTTTTCC-AAAATTACCATTGTAC-CCTTGAACTTCCAAAAATTTTAT
1 TTTTGACCCCAAAC-TTTCCAAAAATCACCATT-TTCTCC-CAAACTTCCAAAAATTCCAT
* *
32595573 TTTTGACCCCAAATTTTCCAAAAATCACCATTTTGTCCCCAAACTTCCAAGAAA-TCCAT
1 TTTTGACCCCAAACTTTCCAAAAATCACCATTTTCT-CCCAAACTTCCAA-AAATTCCAT
* * * ** * * * *
32595632 TTTTGACCCCGAACTTTCCCAAAATTACCATTTTCTCTTAGATTTTCAAAAATTTCAT
1 TTTTGACCCCAAACTTTCCAAAAATCACCATTTTCTCCCAAACTTCCAAAAATTCCAT
* *
32595690 TTTTAACCTCAAACTTTCCAAAAATCACCATTTT
1 TTTTGACCCCAAACTTTCCAAAAATCACCATTTT
32595724 ACCCTCGAAT
Statistics
Matches: 212, Mismatches: 43, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
57 35 0.17
58 68 0.32
59 70 0.33
60 28 0.13
61 11 0.05
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (58 bp):
TTTTGACCCCAAACTTTCCAAAAATCACCATTTTCTCCCAAACTTCCAAAAATTCCAT
Found at i:32595751 original size:28 final size:28
Alignment explanation
Indices: 32595678--32595838 Score: 101
Period size: 29 Copynumber: 5.6 Consensus size: 28
32595668 CTTAGATTTT
* * * *
32595678 CAAAAATTTCATTTTTAACCTCAAACTTTC
1 CAAAAATTACA-TTTTACCCTCGAA-TATC
*
32595708 CAAAAATCACCATTTTACCCTCGAATATC
1 CAAAAATTA-CATTTTACCCTCGAATATC
* * ***
32595737 CAAATATTTCATTTTGACCC-CGAGCGTC
1 CAAAAATTACATTTT-ACCCTCGAATATC
* * *
32595765 CAAAAATTACTATATTGCCCTCGAAGTGTC
1 CAAAAATTAC-ATTTTACCCTCGAA-TATC
**
32595795 C-AAAATTACCATTTTACCCTCGGGTATC
1 CAAAAATTA-CATTTTACCCTCGAATATC
*
32595823 CAAAAATTGCATTTTA
1 CAAAAATTACATTTTA
32595839 TCCCGTTTGC
Statistics
Matches: 101, Mismatches: 23, Indels: 16
0.72 0.16 0.11
Matches are distributed among these distances:
28 33 0.33
29 43 0.43
30 23 0.23
31 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.33
Consensus pattern (28 bp):
CAAAAATTACATTTTACCCTCGAATATC
Found at i:32595828 original size:29 final size:29
Alignment explanation
Indices: 32595706--32595838 Score: 112
Period size: 29 Copynumber: 4.7 Consensus size: 29
32595696 CCTCAAACTT
* *
32595706 TCCAAAAATCACCATTTTACCCTCGAATA
1 TCCAAAAATTACCATTTTACCCTCGAGTA
* * **
32595735 TCCAAATATT-TCATTTTGACCC-CGAGCG
1 TCCAAAAATTACCATTTT-ACCCTCGAGTA
* * * *
32595763 TCCAAAAATTACTATATTGCCCTCGAAGTG
1 TCCAAAAATTACCATTTTACCCTCG-AGTA
*
32595793 TCC-AAAATTACCATTTTACCCTCGGGTA
1 TCCAAAAATTACCATTTTACCCTCGAGTA
*
32595821 TCCAAAAATT-GCATTTTA
1 TCCAAAAATTACCATTTTA
32595839 TCCCGTTTGC
Statistics
Matches: 81, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
28 33 0.41
29 42 0.52
30 6 0.07
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (29 bp):
TCCAAAAATTACCATTTTACCCTCGAGTA
Found at i:32600342 original size:65 final size:60
Alignment explanation
Indices: 32600263--32600399 Score: 175
Period size: 62 Copynumber: 2.2 Consensus size: 60
32600253 GAGGAGATAA
* *
32600263 AAAAAAGAAGAAGAATAAAAGAAAACAAAGAAGAGGTCAAGATAAAAACCCGCAAAGGGCATCTT
1 AAAAAA-AA-AAGAAGAAAAG-AAA-AAAGAA-AAGTCAAGATAAAAACCCGCAAAGGGCATC--
32600328 TT
59 TT
* *
32600330 AAAAAAAAAAGAAGAAAAGAAAAAGGAAAAGTCAAGATGAAAACCCGCAAAGGGCATCTT
1 AAAAAAAAAAGAAGAAAAGAAAAAAGAAAAGTCAAGATAAAAACCCGCAAAGGGCATCTT
32600390 AAAAAAAAAA
1 AAAAAAAAAA
32600400 CCTCCTTCAC
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
60 12 0.18
62 28 0.42
63 5 0.08
64 3 0.05
65 10 0.15
66 2 0.03
67 6 0.09
ACGTcount: A:0.61, C:0.11, G:0.18, T:0.09
Consensus pattern (60 bp):
AAAAAAAAAAGAAGAAAAGAAAAAAGAAAAGTCAAGATAAAAACCCGCAAAGGGCATCTT
Found at i:32602633 original size:148 final size:148
Alignment explanation
Indices: 32602364--32602969 Score: 590
Period size: 148 Copynumber: 4.1 Consensus size: 148
32602354 AAGGATATGG
* * * *
32602364 AGGGAAAGATTTAAGTTGCAACAGCGAACCTTGTACCTCAAAAGATGAGTGGGAAAGATTTAAGC
1 AGGGAAAGATTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAGATGAATAGGAAAGATTTAAGC
* * * * *
32602429 TGTAACGGCAAATCTAATACCACGAAAACATGAAGGGAAAAGTTTAAGTCGTAACGGCGAACCTT
66 TGCAACGGCGAATCTAGTACCACGAAGACATGAAGGGAAAAGTTTAAGTCGCAACGGCGAACCTT
*
32602494 GTACCTTAGAAA-CATGA
131 GTACCTCAGAAAGCATGA
* *
32602511 AGGGAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTCAGAAGATGAGATAGGAAAGATTTAAG
1 AGGGAAAGATTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAGATGA-ATAGGAAAGATTTAAG
* * * * *
32602576 ATGCAATGGCGAATCTAGTACCATGAAGATATGAAGGGAAACGTTTAAGTCGCAACGGCGAACCT
65 CTGCAACGGCGAATCTAGTACCACGAAGACATGAAGGGAAAAGTTTAAGTCGCAACGGCGAACCT
32602641 TGTACCTCA-AAAGCATGA
130 TGTACCTCAGAAAGCATGA
* * * * *
32602659 AGGGAAAGATTTAAGTCGCAACGGCGGATCC-AGTACCAC-GAAGAT-AATGGAGGGAAAGGTTT
1 AGGGAAAGATTTAAGTCGCAACAGC-GAACCTTGTACCTCAGAAGATGAAT--A-GGAAAGATTT
* * * * * * * *
32602721 AAGTTGCAACAGCGAACCTTGCACCTCAGAAG-CATGAAGGGAAATA-TTTAAGCCGTAACGGCG
62 AAGCTGCAACGGCGAATCTAGTACCAC-GAAGACATGAAGGGAAA-AGTTTAAGTCGCAACGGCG
** * ** *
32602784 AATCC-AATACCAC-GAAGATAATGG
125 AA-CCTTGTACCTCAGAA-AGCATGA
* * *
32602808 AGGGAAA-AGTTTAAGTCGCAA-TGACGAACCTTGTACCTCGGAAGCATGAA-GGGAAAGATTTA
1 AGGGAAAGA-TTTAAGTCGCAACAG-CGAACCTTGTACCTCAGAAG-ATGAATAGGAAAGATTTA
* ** ** *
32602870 AGCTGCAACGGCGAATCCAGTACCACGAAGATTTGAAGGGAAAAGTTTAAGTCGCAACGATGAAT
63 AGCTGCAACGGCGAATCTAGTACCACGAAGACATGAAGGGAAAAGTTTAAGTCGCAACGGCGAAC
**
32602935 CTTGTACCTCA-AAAATATGA
128 CTTGTACCTCAGAAAGCATGA
32602955 AGGGAAAGATTTAAG
1 AGGGAAAGATTTAAG
32602970 CTGCAACGGT
Statistics
Matches: 369, Mismatches: 68, Indels: 44
0.77 0.14 0.09
Matches are distributed among these distances:
145 2 0.01
146 1 0.00
147 77 0.21
148 241 0.65
149 40 0.11
150 4 0.01
151 2 0.01
152 2 0.01
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (148 bp):
AGGGAAAGATTTAAGTCGCAACAGCGAACCTTGTACCTCAGAAGATGAATAGGAAAGATTTAAGC
TGCAACGGCGAATCTAGTACCACGAAGACATGAAGGGAAAAGTTTAAGTCGCAACGGCGAACCTT
GTACCTCAGAAAGCATGA
Found at i:32602962 original size:98 final size:98
Alignment explanation
Indices: 32602507--32603112 Score: 729
Period size: 99 Copynumber: 6.2 Consensus size: 98
32602497 CCTTAGAAAC
* * *
32602507 ATGAAGGGAAAGGTTTAAGCCGCAAC-AGCGAACCTTGTACCTCAGAAG-ATGAGATAGGAAAGA
1 ATGAAGGGAAAGGTTTAAGTCGCAACGA-CGAACCTTGTACCTCAAAAGCATGA-A-GGGAAAGA
* * * *
32602570 TTTAAGATGCAATGGCGAATCTAGTACCATGAAGAT
63 TTTAAGCTGCAACGGCGAATCCAGTACCACGAAGAT
* *
32602606 ATGAAGGGAAACGTTTAAGTCGCAACGGCGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTT
1 ATGAAGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTT
*
32602671 AAG-TCGCAACGGCGGATCCAGTACCACGAAGAT
66 AAGCT-GCAACGGCGAATCCAGTACCACGAAGAT
* * * * *
32602704 AATGGAGGGAAAGGTTTAAGTTGCAAC-AGCGAACCTTGCACCTCAGAAGCATGAAGGGAAATAT
1 -ATGAAGGGAAAGGTTTAAGTCGCAACGA-CGAACCTTGTACCTCAAAAGCATGAAGGGAAAGAT
* * *
32602768 TTAAGCCGTAACGGCGAATCCAATACCACGAAGAT
64 TTAAGCTGCAACGGCGAATCCAGTACCACGAAGAT
* * * **
32602803 AATGGAGGGAAAAGTTTAAGTCGCAATGACGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATT
1 -ATGAAGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATT
32602868 TAAGCTGCAACGGCGAATCCAGTACCACGAAGAT
65 TAAGCTGCAACGGCGAATCCAGTACCACGAAGAT
* * * * **
32602902 TTGAAGGGAAAAGTTTAAGTCGCAACGATGAATCTTGTACCTCAAAAATATGAAGGGAAAGATTT
1 ATGAAGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTT
* *
32602967 AAGCTGCAACGGTGAATCTAGTACCAC-AAGGAT
66 AAGCTGCAACGGCGAATCCAGTACCACGAA-GAT
* * * ** *
32603000 ATAAAGGGAAAGGTTTAAGTCGCAACGGCGAACCATGTACCTCGGAAGCATGAAAGGAAAGATTT
1 ATGAAGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTT
* * *
32603065 AAGCCGCCATGGCGAATCCAGTACCACGAAGAT
66 AAGCTGCAACGGCGAATCCAGTACCACGAAGAT
32603098 AT-AGAGGGAAAGGTT
1 ATGA-AGGGAAAGGTT
32603113 ACAACCGCAA
Statistics
Matches: 440, Mismatches: 57, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
97 4 0.01
98 212 0.48
99 219 0.50
100 5 0.01
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.19
Consensus pattern (98 bp):
ATGAAGGGAAAGGTTTAAGTCGCAACGACGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTT
AAGCTGCAACGGCGAATCCAGTACCACGAAGAT
Found at i:32603108 original size:49 final size:49
Alignment explanation
Indices: 32602349--32603109 Score: 469
Period size: 49 Copynumber: 15.5 Consensus size: 49
32602339 AGTTTTCATC
* * * *
32602349 ACCAC-AAGGATATGGAGGGAAAGATTTAAGTTGCAACAGCGAA-CCTTGT
1 ACCACGAA-GATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCC-AGT
* * * * * * * *
32602398 ACCTC-AAAAGATGAGTGGGAAAGATTTAAG-CTGTAACGGCAAATCTAAT
1 ACCACGAAGATATGA-AGGGAAAGATTTAAGTC-GCAACGGCGAATCCAGT
* * * *
32602447 ACCACGAAAACATGAAGGGAAA-AGTTTAAGTCGTAACGGCGAA-CCTTGT
1 ACCACGAAGATATGAAGGGAAAGA-TTTAAGTCGCAACGGCGAATCC-AGT
* * * * *
32602496 ACCTTA-GAA-ACATGAAGGGAAAGGTTTAAGCCGCAACAGCGAA-CCTTGT
1 ACC--ACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCC-AGT
* * *
32602545 ACCTCAGAAGATGA-GATA-GGAAAGATTTAAGAT-GCAATGGCGAATCTAGT
1 ACCAC-GAAGAT-ATGA-AGGGAAAGATTTAAG-TCGCAACGGCGAATCCAGT
* *
32602595 ACCATGAAGATATGAAGGGAAACG-TTTAAGTCGCAACGGCGAA-CCTTGT
1 ACCACGAAGATATGAAGGGAAA-GATTTAAGTCGCAACGGCGAATCC-AGT
* * * *
32602644 ACCTC-AAAAGCATGAAGGGAAAGATTTAAGTCGCAACGGCGGATCCAGT
1 ACCACGAAGA-TATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCAGT
* * * * * *
32602693 ACCACGAAGATAATGGAGGGAAAGGTTTAAGTTGCAACAGCGAA-CCTTGC
1 ACCACGAAGAT-ATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCC-AGT
* * * * * *
32602743 ACCTCAGAAG-CATGAAGGGAAATATTTAAGCCGTAACGGCGAATCCAAT
1 ACCAC-GAAGATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCAGT
* * * *
32602792 ACCACGAAGATAATGGAGGGAAA-AGTTTAAGTCGCAATGACGAA-CCTTGT
1 ACCACGAAGAT-ATGAAGGGAAAGA-TTTAAGTCGCAACGGCGAATCC-AGT
* *
32602842 ACCTCGGAAG-CATGAAGGGAAAGATTTAAG-CTGCAACGGCGAATCCAGT
1 ACCAC-GAAGATATGAAGGGAAAGATTTAAGTC-GCAACGGCGAATCCAGT
* ** **
32602891 ACCACGAAGATTTGAAGGGAAA-AGTTTAAGTCGCAACGATGAATCTTGT
1 ACCACGAAGATATGAAGGGAAAGA-TTTAAGTCGCAACGGCGAATCCAGT
* * * * *
32602940 ACCTCAAAAATATGAAGGGAAAGATTTAAG-CTGCAACGGTGAATCTAGT
1 ACCACGAAGATATGAAGGGAAAGATTTAAGTC-GCAACGGCGAATCCAGT
* *
32602989 ACCAC-AAGGATATAAAGGGAAAGGTTTAAGTCGCAACGGCGAA-CCATGT
1 ACCACGAA-GATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCA-GT
* * * * * *
32603038 ACCTCGGAAG-CATGAAAGGAAAGATTTAAGCCGCCATGGCGAATCCAGT
1 ACCAC-GAAGATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCAGT
32603087 ACCACGAAGATAT-AGAGGGAAAG
1 ACCACGAAGATATGA-AGGGAAAG
32603110 GTTACAACCG
Statistics
Matches: 552, Mismatches: 109, Indels: 102
0.72 0.14 0.13
Matches are distributed among these distances:
48 34 0.06
49 382 0.69
50 122 0.22
51 14 0.03
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (49 bp):
ACCACGAAGATATGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCAGT
Found at i:32603122 original size:98 final size:97
Alignment explanation
Indices: 32602511--32603150 Score: 694
Period size: 98 Copynumber: 6.5 Consensus size: 97
32602501 AGAAACATGA
* * *
32602511 AGGGAAAGGTTTAAGCCGCAACAGCGAACCTTGTACCTCAGAAG-ATGAGATAGGAAAGATTTAA
1 AGGGAAAGG-TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGA-A-GGGAAAGATTTAA
** * * *
32602575 GATGCAATGGCGAATCTAGTACCATGAAGATAT-G
63 GCCGCAACGGCGAATCCAGTACCACGAAGATATAG
* *
32602609 AAGGGAAACGTTTAAGTCGCAACGGCGAACCTTGTACCTCAAAAGCATGAAGGGAAAGATTTAAG
1 -AGGGAAA-GGTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAG
* * *
32602674 TCGCAACGGCGGATCCAGTACCACGAAGATAATGG
64 CCGCAACGGCGAATCCAGTACCACGAAGAT-ATAG
* * * *
32602709 AGGGAAAGGTTTAAGTTGCAACAGCGAACCTTGCACCTCAGAAGCATGAAGGGAAATATTTAAGC
1 AGGGAAAGG-TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGC
* * *
32602774 CGTAACGGCGAATCCAATACCACGAAGATAATGG
65 CGCAACGGCGAATCCAGTACCACGAAGAT-ATAG
* * * *
32602808 AGGGAAAAGTTTAAGTCGCAATGACGAACCTTGTACCTCGGAAGCATGAAGGGAAAGATTTAAGC
1 AGGG-AAAGGTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGC
* *
32602873 TGCAACGGCGAATCCAGTACCACGAAGAT-TTG
65 CGCAACGGCGAATCCAGTACCACGAAGATATAG
* ** * * **
32602905 AAGGGAAAAGTTTAAGTCGCAACGATGAATCTTGTACCTCAAAAATATGAAGGGAAAGATTTAAG
1 -AGGG-AAAGGTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAG
* * * *
32602970 CTGCAACGGTGAATCTAGTACCAC-AAGGATATAA
64 CCGCAACGGCGAATCCAGTACCACGAA-GATATAG
* * *
32603004 AGGGAAAGGTTTAAGTCGCAACGGCGAACCATGTACCTCGGAAGCATGAAAGGAAAGATTTAAGC
1 AGGGAAAGG-TTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGC
* *
32603069 CGCCATGGCGAATCCAGTACCACGAAGATATAG
65 CGCAACGGCGAATCCAGTACCACGAAGATATAG
** * * * *
32603102 AGGGAAAGGTTACAACCGCAATGGTGAACCTTGTACCTTAGAAACATGA
1 AGGGAAAGGTTA-AGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGA
32603151 CGAAAAAGAT
Statistics
Matches: 461, Mismatches: 68, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
97 11 0.02
98 231 0.50
99 209 0.45
100 10 0.02
ACGTcount: A:0.37, C:0.18, G:0.26, T:0.19
Consensus pattern (97 bp):
AGGGAAAGGTTAAGTCGCAACGGCGAACCTTGTACCTCAGAAGCATGAAGGGAAAGATTTAAGCC
GCAACGGCGAATCCAGTACCACGAAGATATAG
Found at i:32603509 original size:78 final size:77
Alignment explanation
Indices: 32603379--32603563 Score: 239
Period size: 78 Copynumber: 2.4 Consensus size: 77
32603369 TTACATAAAC
*
32603379 CAATCTCTTACCTCGAGCCTTGGGCAGATTGCAGCCGTTCGATCTCTCACCCCGAGCCTAGGGCA
1 CAATCTCTTACCTCGAGCCTTGGGCAGATTGCAGCCATTCGATCTCTCACCCCGAGCCTAGGGCA
* *
32603444 GATTATCATTAG
66 GATCATCATCAG
* * * * *
32603456 TCAATCTCTTACCCCGAGCC-TGGGATAGATTGCAGCCATTCGATCTCTTACCCCGAGTCTGGGG
1 -CAATCTCTTACCTCGAGCCTTGGG-CAGATTGCAGCCATTCGATCTCTCACCCCGAGCCTAGGG
*
32603520 GAGATCATCATCAG
64 CAGATCATCATCAG
32603534 CAAATCTCTTACCTCGAG-CTTGAGGCAGAT
1 C-AATCTCTTACCTCGAGCCTTG-GGCAGAT
32603564 CATCATCAGC
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
77 6 0.07
78 84 0.91
79 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (77 bp):
CAATCTCTTACCTCGAGCCTTGGGCAGATTGCAGCCATTCGATCTCTCACCCCGAGCCTAGGGCA
GATCATCATCAG
Found at i:32603518 original size:39 final size:38
Alignment explanation
Indices: 32603381--32603518 Score: 143
Period size: 39 Copynumber: 3.6 Consensus size: 38
32603371 ACATAAACCA
* *
32603381 ATCTCTTACCTCGAGCCTTGGGCAGATTGCAGCCGTTCG
1 ATCTCTTACCCCGAGCC-TGGGCAGATTGCAGCCATTCG
* * ** * *
32603420 ATCTCTCACCCCGAGCCTAGGGCAGATTATCA-TTAGTCA
1 ATCTCTTACCCCGAGCCT-GGGCAGATT-GCAGCCATTCG
*
32603459 ATCTCTTACCCCGAGCCTGGGATAGATTGCAGCCATTCG
1 ATCTCTTACCCCGAGCCTGGG-CAGATTGCAGCCATTCG
*
32603498 ATCTCTTACCCCGAGTCTGGG
1 ATCTCTTACCCCGAGCCTGGG
32603519 GGAGATCATC
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
38 6 0.08
39 71 0.90
40 2 0.03
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (38 bp):
ATCTCTTACCCCGAGCCTGGGCAGATTGCAGCCATTCG
Found at i:32603541 original size:39 final size:39
Alignment explanation
Indices: 32603498--32603586 Score: 126
Period size: 39 Copynumber: 2.3 Consensus size: 39
32603488 CAGCCATTCG
* *
32603498 ATCTCTTACCCCGAG-TCTGGGGGAGATCATCATCAGCAA
1 ATCTCTTACCCCGAGCT-TGAGGCAGATCATCATCAGCAA
* *
32603537 ATCTCTTACCTCGAGCTTGAGGCAGATCATCATCAGCCA
1 ATCTCTTACCCCGAGCTTGAGGCAGATCATCATCAGCAA
32603576 ATCTCTTACCC
1 ATCTCTTACCC
32603587 GATCATGGGG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
39 43 0.98
40 1 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (39 bp):
ATCTCTTACCCCGAGCTTGAGGCAGATCATCATCAGCAA
Found at i:32604186 original size:17 final size:17
Alignment explanation
Indices: 32604161--32604215 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
32604151 GGGCCCAACA
*
32604161 AAATTTAAATTTATTTT
1 AAATTTAAATTTATTTG
** *
32604178 AGGTTTAAATTCATTTG
1 AAATTTAAATTTATTTG
32604195 AAATTTAAATTTATTT-
1 AAATTTAAATTTATTTG
32604211 AAATT
1 AAATT
32604216 AAAAAGTCCA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 5 0.16
17 26 0.84
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (17 bp):
AAATTTAAATTTATTTG
Found at i:32604859 original size:3 final size:3
Alignment explanation
Indices: 32604845--32604910 Score: 53
Period size: 3 Copynumber: 21.7 Consensus size: 3
32604835 TTAATAAATG
* * * *
32604845 AAT AAT AGT AAT AAT AGT AAT AAT AAT AAT AAT AAAT AGGT -TT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AAT AAT
* *
32604891 AAT AAT AAT GAT ATT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
32604911 ATATTAAATA
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
2 1 0.02
3 44 0.90
4 4 0.08
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:32604859 original size:9 final size:9
Alignment explanation
Indices: 32604845--32604878 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
32604835 TTAATAAATG
32604845 AATAATAGT
1 AATAATAGT
32604854 AATAATAGT
1 AATAATAGT
*
32604863 AATAATAAT
1 AATAATAGT
32604872 AATAATA
1 AATAATA
32604879 AATAGGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (9 bp):
AATAATAGT
Found at i:32606247 original size:59 final size:59
Alignment explanation
Indices: 32606117--32606348 Score: 195
Period size: 59 Copynumber: 3.9 Consensus size: 59
32606107 TTTCCCGGAT
* * * * * * ** **
32606117 TTCCAAAAATTACATTTTTGATCCTGAACTTTTTCAAAATTTAATATTTTACCCTTGAA-C
1 TTCC-AAAATTCCATTTTTGACCCTAAAC-TTTCCAAAAATCACCATTTTACCCTCAAATC
* * *
32606177 TT-CAAATATTCCATTTTTGACCCCAAATTTTCCAAAAATCACCATTTTGTCCC-CAAA-C
1 TTCCAAA-ATTCCATTTTTGACCCTAAACTTTCCAAAAATCACCATTTT-ACCCTCAAATC
*
32606235 TTCCAAGAATTCCATTTTTGACCCTAAACTTTCCAAAAAAT-ACCATTTTACCCTCAAATT
1 TTCCAA-AATTCCATTTTTGACCCTAAACTTTCC-AAAAATCACCATTTTACCCTCAAATC
** * * * *
32606295 TTTGAAAATTTCATTTTTGACCTTGAACTTTCCAAAAATCACCATTTTATCCTC
1 TTCCAAAATTCCATTTTTGACCCTAAACTTTCCAAAAATCACCATTTTACCCTC
32606349 GGATGTCCAA
Statistics
Matches: 141, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
58 32 0.23
59 96 0.68
60 13 0.09
ACGTcount: A:0.33, C:0.24, G:0.04, T:0.39
Consensus pattern (59 bp):
TTCCAAAATTCCATTTTTGACCCTAAACTTTCCAAAAATCACCATTTTACCCTCAAATC
Found at i:32606253 original size:29 final size:29
Alignment explanation
Indices: 32606174--32606283 Score: 107
Period size: 29 Copynumber: 3.7 Consensus size: 29
32606164 TTTACCCTTG
*
32606174 AACTT-CAAATATTCCATTTTTGACCCCA
1 AACTTCCAAAAATTCCATTTTTGACCCCA
* * *
32606202 AATTTTCCAAAAATCACCA-TTTTGTCCCCA
1 AA-CTTCCAAAAAT-TCCATTTTTGACCCCA
* *
32606232 AACTTCCAAGAATTCCATTTTTGACCCTA
1 AACTTCCAAAAATTCCATTTTTGACCCCA
*
32606261 AACTTTCCAAAAAATACCATTTT
1 AAC-TTCC-AAAAATTCCATTTT
32606284 ACCCTCAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
28 5 0.08
29 23 0.35
30 22 0.34
31 15 0.23
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.35
Consensus pattern (29 bp):
AACTTCCAAAAATTCCATTTTTGACCCCA
Found at i:32606287 original size:29 final size:29
Alignment explanation
Indices: 32606191--32606342 Score: 112
Period size: 30 Copynumber: 5.1 Consensus size: 29
32606181 AATATTCCAT
*
32606191 TTTTGACCCCAAATTTTCCAAAAATCACCA
1 TTTTGACCCCAAACTTTCCAAAAAT-ACCA
* * *
32606221 TTTTGTCCCCAAAC-TTCCAAGAATTCCA
1 TTTTGACCCCAAACTTTCCAAAAATACCA
*
32606249 TTTTTGACCCTAAACTTTCCAAAAAATACCA
1 -TTTTGACCCCAAACTTTCC-AAAAATACCA
*** **
32606280 TTTT-ACCCTCAAA-TTTTTGAAAATTTCA
1 TTTTGACCC-CAAACTTTCCAAAAATACCA
***
32606308 TTTTTGACCTTGAACTTTCCAAAAATCACCA
1 -TTTTGACCCCAAACTTTCCAAAAAT-ACCA
32606339 TTTT
1 TTTT
32606343 ATCCTCGGAT
Statistics
Matches: 92, Mismatches: 22, Indels: 16
0.71 0.17 0.12
Matches are distributed among these distances:
28 10 0.11
29 34 0.37
30 38 0.41
31 10 0.11
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.37
Consensus pattern (29 bp):
TTTTGACCCCAAACTTTCCAAAAATACCA
Found at i:32606362 original size:59 final size:58
Alignment explanation
Indices: 32606100--32606373 Score: 194
Period size: 59 Copynumber: 4.7 Consensus size: 58
32606090 TTCCATTTCT
* * * * * * * *
32606100 ACCATTTTTTCC-CGGATTTCCAAAAATTACATTTTTGATCCTGAACTTTTTCAAAATTT
1 ACCATTTTATCCTC-GAATTCCAAAAATTCCATTTTTGACCCTAAAC-TTTCCAAAAATC
** * * * * *
32606159 AATATTTTACCCTTGAACTT-CAAATATTCCATTTTTGACCCCAAATTTTCCAAAAATC
1 ACCATTTTATCCTCGAA-TTCCAAAAATTCCATTTTTGACCCTAAACTTTCCAAAAATC
* * * *
32606217 ACCATTTTGTCCCCAAACTTCCAAGAATTCCATTTTTGACCCTAAACTTTCCAAAAAAT-
1 ACCATTTTATCCTCGAA-TTCCAAAAATTCCATTTTTGACCCTAAACTTTCC-AAAAATC
* * *** * * *
32606276 ACCATTTTACCCTCAAATTTTTGAAAATTTCATTTTTGACCTTGAACTTTCCAAAAATC
1 ACCATTTTATCCTCGAA-TTCCAAAAATTCCATTTTTGACCCTAAACTTTCCAAAAATC
* **
32606335 ACCATTTTATCCTCGGATGTCCAAAAATTTAATTTTTGA
1 ACCATTTTATCCTCGAAT-TCCAAAAATTCCATTTTTGA
32606374 GCCCGAGCCT
Statistics
Matches: 165, Mismatches: 44, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
58 29 0.18
59 128 0.78
60 8 0.05
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (58 bp):
ACCATTTTATCCTCGAATTCCAAAAATTCCATTTTTGACCCTAAACTTTCCAAAAATC
Found at i:32609668 original size:48 final size:48
Alignment explanation
Indices: 32609597--32609694 Score: 117
Period size: 48 Copynumber: 2.0 Consensus size: 48
32609587 CATGATTAGT
* * * * *
32609597 AGCAAGACCAATATGTGGATGACATCCACG-GCTATGTGGAGGACGTGG
1 AGCAAAACCAATATATGGATGACAACCACGATC-ATGTGGAGGACATGG
* *
32609645 AGCAAAACCACTATATGGATGACAACGACGATCATGTGGAGGACATGG
1 AGCAAAACCAATATATGGATGACAACCACGATCATGTGGAGGACATGG
32609693 AG
1 AG
32609695 TTGGTTTTCC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
48 41 0.98
49 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.17
Consensus pattern (48 bp):
AGCAAAACCAATATATGGATGACAACCACGATCATGTGGAGGACATGG
Found at i:32615010 original size:20 final size:20
Alignment explanation
Indices: 32614978--32615027 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
32614968 TTCCAAAAAG
32614978 TTGCTGACT-CTGC-CAACTGC
1 TTGCTGA-TGCTGCTCAA-TGC
*
32614998 TTGCTGATGCTGCTCGATGC
1 TTGCTGATGCTGCTCAATGC
32615018 TTGCTGATGC
1 TTGCTGATGC
32615028 AGTTGGCTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 24 0.89
21 2 0.07
ACGTcount: A:0.12, C:0.28, G:0.26, T:0.34
Consensus pattern (20 bp):
TTGCTGATGCTGCTCAATGC
Found at i:32615016 original size:10 final size:10
Alignment explanation
Indices: 32614995--32615027 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
32614985 CTCTGCCAAC
32614995 TGCTTGCTGA
1 TGCTTGCTGA
32615005 TGC-TGCTCGA
1 TGCTTGCT-GA
32615015 TGCTTGCTGA
1 TGCTTGCTGA
32615025 TGC
1 TGC
32615028 AGTTGGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 4 0.19
10 13 0.62
11 4 0.19
ACGTcount: A:0.09, C:0.24, G:0.30, T:0.36
Consensus pattern (10 bp):
TGCTTGCTGA
Found at i:32619513 original size:10 final size:10
Alignment explanation
Indices: 32619500--32619533 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32619490 GATGCTACTC
32619500 GATGCTGCCT
1 GATGCTGCCT
*
32619510 GATGCTGCTT
1 GATGCTGCCT
*
32619520 GATGCTTCCT
1 GATGCTGCCT
32619530 GATG
1 GATG
32619534 TAGTTGGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.12, C:0.24, G:0.29, T:0.35
Consensus pattern (10 bp):
GATGCTGCCT
Found at i:32619513 original size:20 final size:20
Alignment explanation
Indices: 32619490--32619533 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
32619480 ACTGCTTGCA
32619490 GATGCTACTCGATGCTGCCT
1 GATGCTACTCGATGCTGCCT
* * *
32619510 GATGCTGCTTGATGCTTCCT
1 GATGCTACTCGATGCTGCCT
32619530 GATG
1 GATG
32619534 TAGTTGGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.14, C:0.25, G:0.27, T:0.34
Consensus pattern (20 bp):
GATGCTACTCGATGCTGCCT
Found at i:32622892 original size:18 final size:17
Alignment explanation
Indices: 32622871--32622912 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
32622861 AATTTTGTTA
*
32622871 GGTTTAGGGTTTTATTAG
1 GGTTTAGGGTTTT-TAAG
*
32622889 GG-TTAAGGTTTTTAAG
1 GGTTTAGGGTTTTTAAG
32622905 GGTTTAGG
1 GGTTTAGG
32622913 ATTAAGGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 5 0.25
17 13 0.65
18 2 0.10
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (17 bp):
GGTTTAGGGTTTTTAAG
Found at i:32633471 original size:31 final size:29
Alignment explanation
Indices: 32633436--32633546 Score: 96
Period size: 31 Copynumber: 3.7 Consensus size: 29
32633426 ATCTCAAAAT
*
32633436 TATACATGAACTTTAATTTAATGTGCAATTG
1 TATACATGAACTTTAATTT--GGTGCAATTG
*
32633467 TATACATGAGCTTTAATTTGGTGCAATTG
1 TATACATGAACTTTAATTTGGTGCAATTG
* * * * * *
32633496 TATACGTAAAACTCTAATTGTGGTTCAAATA
1 TATACAT-GAACTTTAATT-TGGTGCAATTG
*
32633527 TATACTTGAAACTTTAATTT
1 TATACATG-AACTTTAATTT
32633547 TGATTTAATC
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
29 15 0.23
30 9 0.14
31 41 0.63
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (29 bp):
TATACATGAACTTTAATTTGGTGCAATTG
Found at i:32633744 original size:29 final size:30
Alignment explanation
Indices: 32633689--32633768 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 30
32633679 TAATTGGATC
* *
32633689 AAATCAAAATTTGATGTCTAAAATT-ACATA
1 AAATCAAAA-TTCATGTATAAAATTAACATA
* *
32633719 AAATCAAAATTCATGTATACAATTACACATT
1 AAATCAAAATTCATGTATAAAATTA-ACATA
* *
32633750 AAATCATAGTTCATGTATA
1 AAATCAAAATTCATGTATA
32633769 GTTTTGGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
29 12 0.29
30 9 0.21
31 21 0.50
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATCAAAATTCATGTATAAAATTAACATA
Found at i:32635225 original size:16 final size:16
Alignment explanation
Indices: 32635195--32635225 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32635185 AGGTATAGTA
*
32635195 AAATATTAATAAAAAT
1 AAATATTAAAAAAAAT
32635211 AAATATTAAAAAAAA
1 AAATATTAAAAAAAA
32635226 CAATTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAATATTAAAAAAAAT
Found at i:32636481 original size:23 final size:22
Alignment explanation
Indices: 32636443--32636486 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
32636433 TAATGCAAAT
32636443 TTATTTCAACGATTACAAACCA
1 TTATTTCAACGATTACAAACCA
32636465 TTATTTCCAAC-AGTTACAAACC
1 TTATTT-CAACGA-TTACAAACC
32636487 GCTTTTTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32
Consensus pattern (22 bp):
TTATTTCAACGATTACAAACCA
Found at i:32640509 original size:29 final size:29
Alignment explanation
Indices: 32640477--32640559 Score: 103
Period size: 29 Copynumber: 2.8 Consensus size: 29
32640467 AAAACATAAT
* *
32640477 TTTTAGAAAGTTCGGGGGCCAAATTTGAA
1 TTTTGGAAAGTTCAGGGGCCAAATTTGAA
* *
32640506 TTTTGGAAAGTTTAGGGGTCAAATTTGAA
1 TTTTGGAAAGTTCAGGGGCCAAATTTGAA
* *
32640535 TTGTTGGAAAGTTCATGGGTCAAAT
1 TT-TTGGAAAGTTCAGGGGCCAAAT
32640560 ACAAAATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
29 27 0.57
30 20 0.43
ACGTcount: A:0.30, C:0.07, G:0.28, T:0.35
Consensus pattern (29 bp):
TTTTGGAAAGTTCAGGGGCCAAATTTGAA
Found at i:32640572 original size:30 final size:29
Alignment explanation
Indices: 32640504--32640667 Score: 159
Period size: 30 Copynumber: 5.5 Consensus size: 29
32640494 GCCAAATTTG
* ***
32640504 AATTTTGGAAAGTTTAGGGGTCAAATTTG
1 AATTTTGGAAAGTTTAAGGGTCAAATCAA
* *
32640533 AATTGTTGGAAAGTTCATGGGTCAAATACAA
1 AATT-TTGGAAAGTTTAAGGGTCAAAT-CAA
* *
32640564 AATTTTGGAAAATTTAAGGGTCAAAACATA
1 AATTTTGGAAAGTTTAAGGGTCAAATCA-A
* *
32640594 ATTTTTAGAAAGTTTAA-GGTCAAATCCAA
1 AATTTTGGAAAGTTTAAGGGTCAAAT-CAA
* *
32640623 ATTTTTTGAAAGTTTAAGGGTCAAATCTAA
1 AATTTTGGAAAGTTTAAGGGTCAAATC-AA
*
32640653 ATTTTTGGAAAGTTT
1 AATTTTGGAAAGTTT
32640668 GGGTTAAAAA
Statistics
Matches: 114, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
29 31 0.27
30 79 0.69
31 4 0.04
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (29 bp):
AATTTTGGAAAGTTTAAGGGTCAAATCAA
Found at i:32640614 original size:29 final size:29
Alignment explanation
Indices: 32640552--32640716 Score: 124
Period size: 30 Copynumber: 5.7 Consensus size: 29
32640542 AAAGTTCATG
* * *
32640552 GGTCAAATACA-AAATTTTGGAAAATTTAA
1 GGTCAAA-ACATAATTTTTAGAAAGTTTAA
32640581 GGGTCAAAACATAATTTTTAGAAAGTTTAA
1 -GGTCAAAACATAATTTTTAGAAAGTTTAA
* *
32640611 GGTCAAATCCA-AATTTTTTGAAAGTTTAA
1 GGTCAAA-ACATAATTTTTAGAAAGTTTAA
* * *
32640640 GGGTCAAATC-TAAATTTTTGGAAAGTTT-G
1 -GGTCAAAACAT-AATTTTTAGAAAGTTTAA
* * * **
32640669 GGTTAAAA-ATAATATTTAAAAAGTTTGTG
1 GGTCAAAACATAATTTTTAGAAAGTTT-AA
32640698 GGTCAAAACATAATTTTTA
1 GGTCAAAACATAATTTTTA
32640717 AATAAAATAG
Statistics
Matches: 111, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
27 13 0.12
28 7 0.06
29 36 0.32
30 55 0.50
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (29 bp):
GGTCAAAACATAATTTTTAGAAAGTTTAA
Found at i:32640645 original size:59 final size:59
Alignment explanation
Indices: 32640504--32640667 Score: 168
Period size: 59 Copynumber: 2.8 Consensus size: 59
32640494 GCCAAATTTG
* * ** * * * * *
32640504 AATTTTGGAAAGTTTAGGGGTCAAATTTGAATTGTTGGAAAGTTCATGGGTCAAATACAA
1 AATTTTGGAAAATTTAAGGGTCAAAACTAAATTTTTAGAAAGTTTA-AGGTCAAATACAA
*
32640564 AATTTTGGAAAATTTAAGGGTCAAAAC-ATAATTTTTAGAAAGTTTAAGGTCAAATCCAA
1 AATTTTGGAAAATTTAAGGGTCAAAACTA-AATTTTTAGAAAGTTTAAGGTCAAATACAA
* * * * *
32640623 ATTTTTTGAAAGTTTAAGGGTCAAATCTAAATTTTTGGAAAGTTT
1 AATTTTGGAAAATTTAAGGGTCAAAACTAAATTTTTAGAAAGTTT
32640668 GGGTTAAAAA
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
59 49 0.56
60 38 0.44
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.36
Consensus pattern (59 bp):
AATTTTGGAAAATTTAAGGGTCAAAACTAAATTTTTAGAAAGTTTAAGGTCAAATACAA
Found at i:32641908 original size:18 final size:19
Alignment explanation
Indices: 32641885--32641922 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
32641875 TTATTTTTTA
*
32641885 TTTTTTTGT-TTTTTGTTT
1 TTTTTTTGTATTTTGGTTT
32641903 TTTTTTTGTATTTTGGTTT
1 TTTTTTTGTATTTTGGTTT
32641922 T
1 T
32641923 GAATGAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84
Consensus pattern (19 bp):
TTTTTTTGTATTTTGGTTT
Found at i:32646130 original size:52 final size:52
Alignment explanation
Indices: 32646047--32646147 Score: 175
Period size: 52 Copynumber: 1.9 Consensus size: 52
32646037 ATTGAAAAAG
* *
32646047 GTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATGAT
1 GTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTATGAT
*
32646099 GTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTATGGATTAT
1 GTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTAT
32646148 TAGGTTCGAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.37
Consensus pattern (52 bp):
GTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTATGAT
Found at i:32646164 original size:52 final size:52
Alignment explanation
Indices: 32646045--32646176 Score: 174
Period size: 52 Copynumber: 2.5 Consensus size: 52
32646035 TAATTGAAAA
* *
32646045 AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTATG
1 AGGTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTATG
* * *
32646097 ATGTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTATGGATTATT
1 AGGTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTATG
* * ** *
32646149 AGGTTCGATTTCTATGTGTCATCATGAG
1 AGGTCCAATGACTATGTGTCATCGTGAG
32646177 TGTAGGATTC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (52 bp):
AGGTCCAATGACTATGTGTCATCGTGAGCATATGAATCCTTTACGGATTATG
Found at i:32649453 original size:30 final size:31
Alignment explanation
Indices: 32649413--32649473 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
32649403 TTTAGAAAAA
32649413 TTTTAAAATTTTATAT-ATTCTTTAAAATAT
1 TTTTAAAATTTTATATAATTCTTTAAAATAT
* * *
32649443 TTTTAGAATTTTTTATAATTTTTTAAAATAT
1 TTTTAAAATTTTATATAATTCTTTAAAATAT
32649474 AAACTTTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (31 bp):
TTTTAAAATTTTATATAATTCTTTAAAATAT
Found at i:32649736 original size:22 final size:22
Alignment explanation
Indices: 32649705--32649769 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
32649695 ATTTGAATTA
*
32649705 TTCGAGTTACTCAAATTACTTG
1 TTCGAGTTACTCGAATTACTTG
*
32649727 TTTGAGTTACTCGAATTACTTG
1 TTCGAGTTACTCGAATTACTTG
32649749 TTCGAGTTACTCGAATTACTT
1 TTCGAGTTACTCGAATTACTT
32649770 ATTCAAGCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (22 bp):
TTCGAGTTACTCGAATTACTTG
Found at i:32663650 original size:23 final size:22
Alignment explanation
Indices: 32663591--32663652 Score: 56
Period size: 23 Copynumber: 2.9 Consensus size: 22
32663581 CAAAATTAGA
*
32663591 AATTATCTTTTATT-TTTTAGG
1 AATTATCTTTTATTATTTTAAG
* * * *
32663612 ATTTA-ATTTAAATATTTTCAAG
1 AATTATCTTTTATTATTTT-AAG
32663634 AATTATCTTTTATTATTTT
1 AATTATCTTTTATTATTTT
32663653 TAGGTTATTT
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
20 5 0.17
21 8 0.28
22 6 0.21
23 10 0.34
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.60
Consensus pattern (22 bp):
AATTATCTTTTATTATTTTAAG
Found at i:32666609 original size:572 final size:572
Alignment explanation
Indices: 32665526--32667237 Score: 3300
Period size: 572 Copynumber: 3.0 Consensus size: 572
32665516 GCCTTCCTAA
*
32665526 TGGTGTATGTAGATGATATTGTGGTGACT-AGAAGTTCAGCAGAAGTCATCACTCAGATCATCAG
1 TGGTGTATGTAGATGATATTGTGGTGACTGA-AAGTTTAGCAGAAGTCATCACTCAGATCATCAG
**
32665590 ACATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGTTTTGAGG
65 ACATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGG
* *
32665655 TTTGCAGGTTTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAA
130 TTTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAA
*
32665720 AGTAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCT
195 AGCAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCT
32665785 TTAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATA
260 TTAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATA
*
32665850 TGTGCATAATAAGGCTAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCA
325 TGTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCA
32665915 TGTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGA
390 TGTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGA
32665980 TTACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGT
455 TTACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGT
32666045 TGAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAATTTTG
520 TGAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAATTTTG
32666098 TGGTGTATGTAGATGATATTGTGGTGACTGAAAGTTTAGCAGAAGTCATCACTCAGATCATCAGA
1 TGGTGTATGTAGATGATATTGTGGTGACTGAAAGTTTAGCAGAAGTCATCACTCAGATCATCAGA
32666163 CATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGGT
66 CATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGGT
32666228 TTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAAA
131 TTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAAA
*
32666293 GCAATGACATGTTGCAGGTATCTTCTACACCACTCTAATGGTTGGTACTCCTAAACTGATTGCTT
196 GCAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCTT
32666358 TAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATAT
261 TAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATAT
32666423 GTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCAT
326 GTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCAT
*
32666488 GTGACCTCATTGGAAAGTAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGAT
391 GTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGAT
32666553 TACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGTT
456 TACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGTT
32666618 GAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAATTTTG
521 GAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAATTTTG
*
32666670 TGGTGTACGTAGATGATATTGTGGTGACTGAAAGTTTAGCAGAAGTCATCACTCAGATCATCAGA
1 TGGTGTATGTAGATGATATTGTGGTGACTGAAAGTTTAGCAGAAGTCATCACTCAGATCATCAGA
*
32666735 CCTCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGGT
66 CATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGGT
32666800 TTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAAA
131 TTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAAA
32666865 GCAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCTT
196 GCAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCTT
32666930 TAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATAT
261 TAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATAT
32666995 GTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCAT
326 GTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCAT
32667060 GTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGAT
391 GTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGAT
32667125 TACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGTT
456 TACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGTT
*
32667190 GAGGATAGAAGATTCACAATAGGTTACTGCATTTATTTAGGGTCAAAT
521 GAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAAT
32667238 CCAGTGGCTT
Statistics
Matches: 1125, Mismatches: 14, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
572 1124 1.00
573 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (572 bp):
TGGTGTATGTAGATGATATTGTGGTGACTGAAAGTTTAGCAGAAGTCATCACTCAGATCATCAGA
CATCTACACAACAAATTTTCCCTTAAAGATATGAGAGAATTACATTTTTTTCTAGGCATTGAGGT
TTGCGGGTCTGCCAAAGGTAGCTTATTTTTATCTCAGAAAAAATATATTTCTGAGTTTCTACAAA
GCAATGACATGTTGCAGGTATCTTCTACACCACTCCAATGGTTGGTACTCCTAAACTGATTGCTT
TAGTTGGGGGCTCCTTTGGTTGATGTTCATAAATATAGAAGTGTGATTGGAAAACTTCAATATAT
GTGCATAATAAGGCCAGAAATTGCTTTATGTGTTAACAAGCTCGGTCAATATATGAATGCCCCAT
GTGACCTCATTGGAAAGCAGTGAAAAGGGTGCTGAGGTACTTAAAAGGAACCTTGAATCATGGAT
TACAATTCAAAGGGGGTCAATTGGAGTTGGTTGCCTATTCTGATGCAGATATGGCATCATCTGTT
GAGGATAGAAGATTCACAACAGGTTACTGCATTTATTTAGGGTCAAATTTTG
Found at i:32683639 original size:20 final size:20
Alignment explanation
Indices: 32683593--32683640 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
32683583 ATAAATTTTA
***
32683593 TATCAAAATTTTTAAAGGGG
1 TATCAAAATTTTTAAACAAG
* *
32683613 TAACAAAATTTTTAATCAAG
1 TATCAAAATTTTTAAACAAG
32683633 TATCAAAA
1 TATCAAAA
32683641 ATCAAAATTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.33
Consensus pattern (20 bp):
TATCAAAATTTTTAAACAAG
Found at i:32685027 original size:3 final size:3
Alignment explanation
Indices: 32685019--32685048 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
32685009 TATTGGTTTC
*
32685019 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32685049 CAATGGATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32687292 original size:46 final size:46
Alignment explanation
Indices: 32687239--32687330 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
32687229 TAAATTTATA
* * *
32687239 TATCAATTTTGGTTCAATGTATAATTTGATACATTAACTTTTATTT
1 TATCAATTTTCGTTCAATATATAATTTGATACATGAACTTTTATTT
*
32687285 TATCAATTTTCGTTCAATATATAATTTGATGCATGAACTTTTATTT
1 TATCAATTTTCGTTCAATATATAATTTGATACATGAACTTTTATTT
32687331 GGTACAATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (46 bp):
TATCAATTTTCGTTCAATATATAATTTGATACATGAACTTTTATTT
Found at i:32690527 original size:10 final size:10
Alignment explanation
Indices: 32690488--32690521 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
32690478 TATTTTGTAT
32690488 GAAAGAAAGG
1 GAAAGAAAGG
32690498 GAAAGAAAGG
1 GAAAGAAAGG
32690508 GAAAGAAAGG
1 GAAAGAAAGG
32690518 GAAA
1 GAAA
32690522 ATAAGGAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
GAAAGAAAGG
Found at i:32697295 original size:43 final size:43
Alignment explanation
Indices: 32697180--32697365 Score: 203
Period size: 43 Copynumber: 4.3 Consensus size: 43
32697170 ATCTGTTAAT
* * * * *
32697180 TTTAGCGGCATTTGTGTGAAAAACACCGTTAAAGAACAT-TATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGT-TC
* * * * *
32697223 TATAGTGGCATTTATGGGTAAAAGCGCCGCTAAAGAACATGGTC
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGAACATGTTC
* *
32697267 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGTTC
* * *
32697310 TTTAGCGACGTTTGTGGGGAAAGCGCCGCTAAAGACCATGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGTTC
*
32697353 TTTAGCGACGTTT
1 TTTAGCGGCGTTT
32697366 TCCCTCATAA
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 91 0.73
44 34 0.27
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGTTC
Found at i:32699264 original size:23 final size:23
Alignment explanation
Indices: 32699238--32699392 Score: 161
Period size: 23 Copynumber: 6.7 Consensus size: 23
32699228 ACACTAGCAC
32699238 GCTCTCTGATTAGCATTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
*
32699261 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* *
32699284 TCTCTCTAATTAGCATTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* *
32699307 GCTCTCTGATTATCACTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* * ** *
32699330 GCTCTTTGTTTAGC-GCGTCTCGT
1 GCTCTCTGATTAGCATTGTGT-GT
*
32699353 GCTCTCTGTTATTAGCACTT-CGTGT
1 GCTCTCTG--ATTAGCA-TTGTGTGT
32699378 GCTCTCTGATTAGCA
1 GCTCTCTGATTAGCA
32699393 CTTTATGTAC
Statistics
Matches: 107, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
22 3 0.03
23 88 0.82
25 15 0.14
26 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.23, T:0.43
Consensus pattern (23 bp):
GCTCTCTGATTAGCATTGTGTGT
Found at i:32699585 original size:23 final size:23
Alignment explanation
Indices: 32699559--32699713 Score: 161
Period size: 23 Copynumber: 6.7 Consensus size: 23
32699549 ACACTAGCAC
32699559 GCTCTCTGATTAGCATTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
*
32699582 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* *
32699605 TCTCTCTAATTAGCATTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* *
32699628 GCTCTCTGATTATCACTGTGTGT
1 GCTCTCTGATTAGCATTGTGTGT
* * ** *
32699651 GCTCTTTGTTTAGC-GCGTCTCGT
1 GCTCTCTGATTAGCATTGTGT-GT
*
32699674 GCTCTCTGTTATTAGCACTT-CGTGT
1 GCTCTCTG--ATTAGCA-TTGTGTGT
32699699 GCTCTCTGATTAGCA
1 GCTCTCTGATTAGCA
32699714 CTTTATGTAC
Statistics
Matches: 107, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
22 3 0.03
23 88 0.82
25 15 0.14
26 1 0.01
ACGTcount: A:0.13, C:0.22, G:0.23, T:0.43
Consensus pattern (23 bp):
GCTCTCTGATTAGCATTGTGTGT
Found at i:32699667 original size:321 final size:321
Alignment explanation
Indices: 32699085--32700047 Score: 1926
Period size: 321 Copynumber: 3.0 Consensus size: 321
32699075 CATTGAGAAA
32699085 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
1 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
32699150 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
66 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
32699215 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
131 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
32699280 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
196 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
32699345 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
261 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
32699406 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
1 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
32699471 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
66 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
32699536 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
131 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
32699601 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
196 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
32699666 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
261 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
32699727 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
1 ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
32699792 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
66 GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
32699857 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
131 ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
32699922 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
196 GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
32699987 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
261 CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
32700048 CTGTTTAGCT
Statistics
Matches: 642, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
321 642 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (321 bp):
ATAAAGGTGAGAAATACATGATTATGTATATGTGAAGAGAAATGTAAATGTGATGAATAAATTGT
GAATAATGATGTTAAATGAGATTATGCCCATGTAGATGAATTAGAACCGTTGTGATATTAGTGGC
ATGCCATTAAGGAACACTAGCACGCTCTCTGATTAGCATTGTGTGTGCTCTCTGATTAGCACTGT
GTGTTCTCTCTAATTAGCATTGTGTGTGCTCTCTGATTATCACTGTGTGTGCTCTTTGTTTAGCG
CGTCTCGTGCTCTCTGTTATTAGCACTTCGTGTGCTCTCTGATTAGCACTTTATGTACTTT
Found at i:32700068 original size:71 final size:69
Alignment explanation
Indices: 32699880--32700098 Score: 201
Period size: 71 Copynumber: 3.1 Consensus size: 69
32699870 ACACTAGCAC
* * * * * *
32699880 GCTCTCTGATTAGCA-TTGTGTGTGCTCTCTGATTAGCAC-TGTGTGTTCTCTCTAATTAGCATT
1 GCTCTCTGATTAGCACTT-TGTGTGCTTTCTGTTTAGCACTTGTGTGCTCTCTGTTATTAGCACT
32699943 GTGTGT
65 -TGTGT
* * * * *
32699949 GCTCTCTGATTATCACTGTGTGTGCTCTT-TGTTTAGCGCGTCTCGTGCTCTCTGTTATTAGCAC
1 GCTCTCTGATTAGCACTTTGTGTGCT-TTCTGTTTAGCACTTGT-GTGCTCTCTGTTATTAGCAC
32700013 TTCGTGT
64 TT-GTGT
* * * **
32700020 GCTCTCTGATTAGCACTTTATGTACTTTCTGTTTAGCTCTTTGTGTGCTCTCTGTTACCCAGCAC
1 GCTCTCTGATTAGCACTTTGTGTGCTTTCTGTTTAGCAC-TTGTGTGCTCTCTGTTA-TTAGCAC
*
32700085 TTATGT
64 TTGTGT
32700091 GCTCTCTG
1 GCTCTCTG
32700099 TTTCGTACTT
Statistics
Matches: 122, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
69 30 0.25
70 7 0.06
71 76 0.62
72 9 0.07
ACGTcount: A:0.12, C:0.23, G:0.21, T:0.44
Consensus pattern (69 bp):
GCTCTCTGATTAGCACTTTGTGTGCTTTCTGTTTAGCACTTGTGTGCTCTCTGTTATTAGCACTT
GTGT
Found at i:32700075 original size:23 final size:23
Alignment explanation
Indices: 32699880--32700073 Score: 194
Period size: 23 Copynumber: 8.3 Consensus size: 23
32699870 ACACTAGCAC
*
32699880 GCTCTCTGATTAGCATTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
32699903 GCTCTCTGATTAGCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * *
32699926 TCTCTCTAATTAGCATTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
*
32699949 GCTCTCTGATTATCACTGTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
* * * *
32699972 GCTCTTTGTTTAGCGC-GTCTCGT
1 GCTCTCTGATTAGCACTGTGT-GT
32699995 GCTCTCTGTTATTAGCACT-TCGTGT
1 GCTCTCTG--ATTAGCACTGT-GTGT
* *
32700020 GCTCTCTGATTAGCACTTTATGT
1 GCTCTCTGATTAGCACTGTGTGT
* * * * *
32700043 ACTTTCTGTTTAGCTCTTTGTGT
1 GCTCTCTGATTAGCACTGTGTGT
32700066 GCTCTCTG
1 GCTCTCTG
32700074 TTACCCAGCA
Statistics
Matches: 140, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
22 3 0.02
23 118 0.84
24 1 0.01
25 17 0.12
26 1 0.01
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (23 bp):
GCTCTCTGATTAGCACTGTGTGT
Found at i:32706946 original size:29 final size:30
Alignment explanation
Indices: 32706889--32706946 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
32706879 CTGCACCCAT
* * *
32706889 GCCACACGGGCTGGGCACACGGCTATGTGA
1 GCCACACGGGCTGGCCACACGACCATGTGA
*
32706919 GCCACATGGGCT-GCCACACGACCATGTG
1 GCCACACGGGCTGGCCACACGACCATGTG
32706947 CTAGGCTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.14
Consensus pattern (30 bp):
GCCACACGGGCTGGCCACACGACCATGTGA
Found at i:32708519 original size:11 final size:11
Alignment explanation
Indices: 32708505--32708597 Score: 86
Period size: 11 Copynumber: 8.5 Consensus size: 11
32708495 ACCAAATCAT
*
32708505 TTTAAATTTAT
1 TTTAAATTTAA
32708516 TTTAAATTTTAA
1 TTTAAA-TTTAA
*
32708528 TTT--ATTAAA
1 TTTAAATTTAA
32708537 TTTAAATTTAA
1 TTTAAATTTAA
32708548 TTTAAATTTAGA
1 TTTAAATTTA-A
*
32708560 TTT-AATATAAA
1 TTTAAAT-TTAA
*
32708571 TTTAAAGTT-A
1 TTTAAATTTAA
32708581 TTATAAATTTAA
1 TT-TAAATTTAA
32708593 TTTAA
1 TTTAA
32708598 TGTCCAAATA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
9 7 0.10
10 4 0.06
11 38 0.57
12 18 0.27
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:32708531 original size:17 final size:17
Alignment explanation
Indices: 32708503--32708598 Score: 85
Period size: 17 Copynumber: 5.8 Consensus size: 17
32708493 CAACCAAATC
*
32708503 ATTTTAAATTTATTTTAA
1 ATTTT-AATTTAATTTAA
32708521 ATTTTAATTT-A-TTAA
1 ATTTTAATTTAATTTAA
*
32708536 ATTTAAATTTAATTTAA
1 ATTTTAATTTAATTTAA
*
32708553 A-TTTAGATTTAATATAA
1 ATTTTA-ATTTAATTTAA
* *
32708570 ATTTAAAGTT-ATTATAA
1 ATTTTAATTTAATT-TAA
32708587 A-TTTAATTTAAT
1 ATTTTAATTTAAT
32708599 GTCCAAATAC
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
15 13 0.21
16 12 0.19
17 30 0.48
18 8 0.13
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (17 bp):
ATTTTAATTTAATTTAA
Found at i:32708537 original size:26 final size:26
Alignment explanation
Indices: 32708506--32708575 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
32708496 CCAAATCATT
* *
32708506 TTAAATTT-ATTTTAAATTTTAATTTA
1 TTAAATTTAAATTT-AATTTAAATTTA
32708532 TTAAATTTAAATTTAATTTAAATTTAGA
1 TTAAATTTAAATTTAATTTAAATTT--A
* *
32708560 TTTAATATAAATTTAA
1 TTAAATTTAAATTTAA
32708576 AGTTATTATA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 18 0.49
27 4 0.11
28 15 0.41
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (26 bp):
TTAAATTTAAATTTAATTTAAATTTA
Found at i:32708557 original size:6 final size:6
Alignment explanation
Indices: 32708505--32708597 Score: 69
Period size: 6 Copynumber: 16.8 Consensus size: 6
32708495 ACCAAATCAT
* *
32708505 TTTAAA TTT-AT TTTAAA TTTTAA TTT--A -TTAAA TTTAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
32708548 TTTAAA TTTAGA TTT-AA TATAAA TTTAAA GTT--A TTATAAA TTT-AA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA TTTAAA
32708593 TTTAA
1 TTTAA
32708598 TGTCCAAATA
Statistics
Matches: 68, Mismatches: 9, Indels: 20
0.70 0.09 0.21
Matches are distributed among these distances:
3 2 0.03
4 3 0.04
5 19 0.28
6 41 0.60
7 3 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:32709216 original size:18 final size:19
Alignment explanation
Indices: 32709176--32709221 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
32709166 TGAGTACCTT
*
32709176 TAATATTA-TTATTAATTA
1 TAATATTATTTATTAATAA
*
32709194 GAATATTATTTATT-ATAA
1 TAATATTATTTATTAATAA
*
32709212 TAATAGTATT
1 TAATATTATT
32709222 ACTATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
TAATATTATTTATTAATAA
Found at i:32710334 original size:30 final size:30
Alignment explanation
Indices: 32710300--32710433 Score: 164
Period size: 30 Copynumber: 4.5 Consensus size: 30
32710290 GGACTGTCCA
*
32710300 AAAATTATATTTTGACCCCAAAACTTTTTG
1 AAAATTATATTTTGACCCCAAAACTTTTTC
* * *
32710330 AAAATTACT-TTTTGACTCCAAAACATTTCC
1 AAAATTA-TATTTTGACCCCAAAACTTTTTC
* * *
32710360 AACATTATATTTTGACCCCAAAACTTTCTA
1 AAAATTATATTTTGACCCCAAAACTTTTTC
* *
32710390 AAAATTACATTTTGACCCCCAAAC-TTTTC
1 AAAATTATATTTTGACCCCAAAACTTTTTC
32710419 AAAATTATATTTTGA
1 AAAATTATATTTTGA
32710434 ACTGATTTTT
Statistics
Matches: 86, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
29 18 0.21
30 67 0.78
31 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.38
Consensus pattern (30 bp):
AAAATTATATTTTGACCCCAAAACTTTTTC
Found at i:32710369 original size:60 final size:59
Alignment explanation
Indices: 32710300--32710672 Score: 211
Period size: 59 Copynumber: 6.3 Consensus size: 59
32710290 GGACTGTCCA
* * * *
32710300 AAAATTATATTTTGACCCCAAAACTTTTTGAAAATTACTTTTTGACTCCAAAACATTTCC
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCCAAAAC-TTTCC
* * *
32710360 AACATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCCCAAACTTTTC
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCCAAAACTTTCC
* ** **** * * *
32710419 AAAATTATATTTTGAACTGATTTTTTTTTGAAAATTACCATTTT-ACCCCTAAACTTTCC
1 AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTA-CATTTTGACCCCAAAACTTTCC
* * *
32710478 AAAATT-TCATTTTTGACCCC--GA-TTTCACCAAAAATTACCATTTT-ACCCCCAAAACTTTCT
1 AAAATTAT-A-TTTTGACCCCAAAACTTT--CTAAAAATTA-CATTTTGA-CCCCAAAACTTTCC
* * *
32710538 AAAATT-TCATTTTTAACCCC--GATTTTACT-AAAATTACCATTTT-ACCCTC-AAACTTTCC
1 AAAATTAT-A-TTTTGACCCCAAAACTTT-CTAAAAATTA-CATTTTGACCC-CAAAACTTTCC
* * * **
32710596 AAAATTCTATTTTTGACCCC--GA-TTTCACCAAAAATTACCATTTT-ACCCCTGAACTTTCC
1 AAAATTATA-TTTTGACCCCAAAACTTT--CTAAAAATTA-CATTTTGACCCCAAAACTTTCC
**
32710655 AAAATTCCATTTTGACCC
1 AAAATTATATTTTGACCC
32710673 TGATTTCACC
Statistics
Matches: 265, Mismatches: 36, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
57 6 0.02
58 43 0.16
59 117 0.44
60 96 0.36
61 3 0.01
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (59 bp):
AAAATTATATTTTGACCCCAAAACTTTCTAAAAATTACATTTTGACCCCAAAACTTTCC
Found at i:32710491 original size:29 final size:27
Alignment explanation
Indices: 32710449--32710721 Score: 112
Period size: 29 Copynumber: 9.3 Consensus size: 27
32710439 TTTTTTTTTG
32710449 AAAATTACCA-TTTTACCCCTAAACTTTCC
1 AAAATT-CCATTTTTACCCC--AACTTTCC
* *
32710478 AAAATTTCATTTTTGACCCCGA-TTTCACC
1 AAAATTCCATTTTT-ACCCCAACTTT--CC
*
32710507 AAAAATTACCA-TTTTACCCCCAAAACTTTCT
1 -AAAATT-CCATTTTTA-CCCC--AACTTTCC
* * * *
32710538 AAAATTTCATTTTTAACCCCGATTTTACT
1 AAAATTCCATTTTT-ACCCCAACTTT-CC
32710567 AAAATTACCA-TTTTACCCTCAAACTTTCC
1 AAAATT-CCATTTTTACCC-C-AACTTTCC
* *
32710596 AAAATTCTATTTTTGACCCCGA-TTTCACC
1 AAAATTCCATTTTT-ACCCCAACTTT--CC
32710625 AAAAATTACCA-TTTTACCCCTGAACTTTCC
1 -AAAATT-CCATTTTTACCCC--AACTTTCC
* **
32710655 AAAATTCCATTTTGACCCTGA-TTTCACC
1 AAAATTCCATTTTTACCCCAACTTT--CC
32710683 AAAATTACCA-TTTTACCCCTCGAACTTTCC
1 AAAATT-CCATTTTTA-CCC-C-AACTTTCC
32710713 AAAAATTCC
1 -AAAATTCC
32710722 CGTTTTGACC
Statistics
Matches: 188, Mismatches: 22, Indels: 67
0.68 0.08 0.24
Matches are distributed among these distances:
26 3 0.02
27 7 0.04
28 29 0.15
29 66 0.35
30 59 0.31
31 14 0.07
32 7 0.04
33 3 0.02
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.36
Consensus pattern (27 bp):
AAAATTCCATTTTTACCCCAACTTTCC
Done.