Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 124 of 163
Found at i:34295110 original size:25 final size:24
Alignment explanation
Indices: 34295082--34295130 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
34295072 CGTGTTCGTT
34295082 TTGTATCTTGTTAATG-CTTATTTAA
1 TTGTAT-TT-TTAATGTCTTATTTAA
*
34295107 TTGTATTTTTATTGTCTTATTTAA
1 TTGTATTTTTAATGTCTTATTTAA
34295131 CCTTACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 5 0.23
24 11 0.50
25 6 0.27
ACGTcount: A:0.22, C:0.06, G:0.10, T:0.61
Consensus pattern (24 bp):
TTGTATTTTTAATGTCTTATTTAA
Found at i:34296396 original size:28 final size:31
Alignment explanation
Indices: 34296344--34296401 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
34296334 TAAATTTGTT
34296344 AAAAATATATAATAAAAAACATTAG-CTTTA
1 AAAAATATATAATAAAAAACATTAGTCTTTA
* *
34296374 AAAAATATATAA-AAATAA-TTTAGTCTTT
1 AAAAATATATAATAAAAAACATTAGTCTTT
34296402 GGTTTTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 9 0.36
30 12 0.48
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.34
Consensus pattern (31 bp):
AAAAATATATAATAAAAAACATTAGTCTTTA
Found at i:34296675 original size:13 final size:13
Alignment explanation
Indices: 34296657--34296682 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34296647 TTAAAAATAA
34296657 AAATATCAAAATT
1 AAATATCAAAATT
34296670 AAATATCAAAATT
1 AAATATCAAAATT
34296683 TTAAAGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATATCAAAATT
Found at i:34305040 original size:105 final size:104
Alignment explanation
Indices: 34304830--34305042 Score: 300
Period size: 105 Copynumber: 2.0 Consensus size: 104
34304820 GATAATTTTC
* * * * **
34304830 CTCACCCTTGTACCTTGAAAATCATTGATACTTTCACCACTAAATTCACCATGTGAATTCAGTAA
1 CTCACCCTTGCACCTTGAAAATCATTGATACTCTCACAACTAAATTCACCATGTGAACTCAACAA
* *
34304895 GTAAAACTACAACACAAAAGATTTTACTATCAATATGCA
66 GTAAAACCACAACACAAAAGATTTTACTATAAATATGCA
* * *
34304934 CTCACCCTTGCACCTTGAAGATCATTGATACTCTCATAACTAAATTCACTCCTGTGAACTCAACA
1 CTCACCCTTGCACCTTGAAAATCATTGATACTCTCACAACTAAATTCAC-CATGTGAACTCAACA
* *
34304999 AGTAAAACCATAACCCAAAAGATTTTACTATAAATATGCA
65 AGTAAAACCACAACACAAAAGATTTTACTATAAATATGCA
34305039 CTCA
1 CTCA
34305043 TTGAAAGGTT
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
104 44 0.46
105 51 0.54
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (104 bp):
CTCACCCTTGCACCTTGAAAATCATTGATACTCTCACAACTAAATTCACCATGTGAACTCAACAA
GTAAAACCACAACACAAAAGATTTTACTATAAATATGCA
Found at i:34305055 original size:30 final size:31
Alignment explanation
Indices: 34305015--34305104 Score: 121
Period size: 30 Copynumber: 2.9 Consensus size: 31
34305005 ACCATAACCC
* * *
34305015 AAAAGATTTTACTATAAATATGCACTCATTG
1 AAAAGGTTTTACTATCAATATGCACTCATAG
34305046 -AAAGGTTTTACTATCAATATGCAC-CAATAG
1 AAAAGGTTTTACTATCAATATGCACTC-ATAG
*
34305076 AAAATGTTTTACTATCAATATGCACTCAT
1 AAAAGGTTTTACTATCAATATGCACTCAT
34305105 CGTAACACCT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
29 1 0.02
30 25 0.48
31 25 0.48
32 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (31 bp):
AAAAGGTTTTACTATCAATATGCACTCATAG
Found at i:34305728 original size:26 final size:27
Alignment explanation
Indices: 34305680--34305730 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
34305670 TATTAATTTT
34305680 AAGTATAACCTTTTTTATATATTCAAA
1 AAGTATAACCTTTTTTATATATTCAAA
34305707 AAGTATAACCTTTTTTAT-TATTCA
1 AAGTATAACCTTTTTTATATATTCA
34305731 TTGTTATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 6 0.25
27 18 0.75
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (27 bp):
AAGTATAACCTTTTTTATATATTCAAA
Found at i:34306055 original size:17 final size:18
Alignment explanation
Indices: 34306028--34306065 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
34306018 AATGCTTTTT
34306028 AAAAGTGA-TTTTGAGCAA
1 AAAAGTGATTTTTGAG-AA
34306046 AAAAGT-ATTTTTGAGAA
1 AAAAGTGATTTTTGAGAA
34306063 AAA
1 AAA
34306066 GCTAAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (18 bp):
AAAAGTGATTTTTGAGAA
Found at i:34307828 original size:16 final size:17
Alignment explanation
Indices: 34307798--34307831 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
34307788 TTATTTTTTT
*
34307798 ATATAAATAATTTAAAA
1 ATATAAATAAATTAAAA
34307815 ATAT-AATAAATTAAAA
1 ATATAAATAAATTAAAA
34307831 A
1 A
34307832 AAAGTATACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAATAAATTAAAA
Found at i:34309781 original size:20 final size:20
Alignment explanation
Indices: 34309758--34309797 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
34309748 GGATCATAAC
34309758 CAAGTAGAAGATATCAATTT
1 CAAGTAGAAGATATCAATTT
34309778 CAAGTAGAAGATATCAATTT
1 CAAGTAGAAGATATCAATTT
34309798 AGTGTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (20 bp):
CAAGTAGAAGATATCAATTT
Found at i:34312471 original size:37 final size:37
Alignment explanation
Indices: 34312421--34312495 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
34312411 AGGCCTATAT
*
34312421 TACTCGAACTCGGGTGGGAATGTTAAGTATGAGTATG
1 TACTCGAACTCGGGTGGGAATGTTAAGTACGAGTATG
* *
34312458 TACTCGGACTCGGGTGTGAATGTTAAGTACGAGTATG
1 TACTCGAACTCGGGTGGGAATGTTAAGTACGAGTATG
34312495 T
1 T
34312496 TTCTAGTAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.31
Consensus pattern (37 bp):
TACTCGAACTCGGGTGGGAATGTTAAGTACGAGTATG
Found at i:34314858 original size:20 final size:22
Alignment explanation
Indices: 34314822--34314875 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
34314812 AAATTCATCC
34314822 ATATTTTA--AAATATAA-T-T
1 ATATTTTATTAAATATAATTAT
34314840 AT-TTTTATTAAATATTAATTAT
1 ATATTTTATTAAATA-TAATTAT
34314862 ATATTTTATTAAAT
1 ATATTTTATTAAAT
34314876 TTGTAAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.17
18 2 0.07
19 5 0.17
20 3 0.10
21 1 0.03
22 3 0.10
23 11 0.37
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATATTTTATTAAATATAATTAT
Found at i:34323941 original size:25 final size:26
Alignment explanation
Indices: 34323904--34323953 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
34323894 TATGTATTTT
*
34323904 TTATGTTTAAATATTT-TTAAAAAAA
1 TTATATTTAAATATTTATTAAAAAAA
* *
34323929 TTATATTTCAATATTTATTTAAAAA
1 TTATATTTAAATATTTATTAAAAAA
34323954 GCTTGAAACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (26 bp):
TTATATTTAAATATTTATTAAAAAAA
Found at i:34330874 original size:2 final size:2
Alignment explanation
Indices: 34330867--34330900 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
34330857 CAATACGTAT
34330867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
34330901 ACAAATGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:34333371 original size:39 final size:39
Alignment explanation
Indices: 34333227--34333777 Score: 442
Period size: 39 Copynumber: 14.0 Consensus size: 39
34333217 AGATTAGATA
* * *
34333227 ATGGCTTCAATCTGCCCTAGGATCGGGGTAAGAGATTGG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* * * *
34333266 ATAGTGGTTACAATCTGCCCTATAATCGGGATAAGAGATTGAATG
1 --A-TGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTG---G
* * *
34333311 ATGGCTACAATTTTCCTCATGATCGGGGTAAGAGATTGG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* *
34333350 ATGGCTGCAATCTACCCCATGATCGGGGTAAGAGATTGG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
** *** * *
34333389 ATGAATGTGATTTGCCCCATGATCGGGGTAAGAGATCGG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* *
34333428 ATGGTTACAATCTGCCCCATGATCGAGGTAAGAGATT-G
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* *** *
34333466 ATTGACTTTGATCTGCCCCATGATCGGGGTAAGAGATTAG
1 A-TGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* * *
34333506 ATGGTTACAATCTGCCCCATGATCGGGGTGAGAGCTT-G
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
** *** ** * **
34333544 ACTAACTGTGATCTTTCCCTTGATCGGGGTAAGAGATCAG
1 A-TGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* * *
34333584 ATGGTTATAATCTGCCCCATGATCGGGGTAAGAGATTGA
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
** ** * *
34333623 ATAACTATGATCTGCCCTATGATCGGGGCAAGAGATT-G
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* **** ** **
34333661 ACTGACCGTGATCTGCCCCATGATTAGGGTAAGAGATCAG
1 A-TGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
* * **
34333701 ATGGTTACAATCTGCCCCATGCTCGGGGTAAGAGATCAG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
*
34333740 ATGGTTACAATCTGCCCCATGATCGGGGTAAGAGATTG
1 ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTG
34333778 ACTGACTGTG
Statistics
Matches: 406, Mismatches: 94, Indels: 22
0.78 0.18 0.04
Matches are distributed among these distances:
38 5 0.01
39 330 0.81
40 6 0.01
41 1 0.00
42 62 0.15
43 1 0.00
45 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGGCTACAATCTGCCCCATGATCGGGGTAAGAGATTGG
Found at i:34345651 original size:18 final size:20
Alignment explanation
Indices: 34345614--34345653 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 20
34345604 TGACATGAAT
34345614 ATACATAATTATAAATACATA
1 ATACATAATTAT-AATACATA
34345635 ATACAT-ATTAT-ATACATA
1 ATACATAATTATAATACATA
34345653 A
1 A
34345654 AGTAAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (20 bp):
ATACATAATTATAATACATA
Found at i:34350077 original size:21 final size:21
Alignment explanation
Indices: 34350053--34350092 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34350043 TGGCGTTGGT
34350053 GGTGGC-AAGCATGGTGGTTTC
1 GGTGGCAAAG-ATGGTGGTTTC
*
34350074 GGTGTCAAAGATGGTGGTT
1 GGTGGCAAAGATGGTGGTT
34350093 GGCAAAGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.17, C:0.10, G:0.42, T:0.30
Consensus pattern (21 bp):
GGTGGCAAAGATGGTGGTTTC
Found at i:34353858 original size:24 final size:23
Alignment explanation
Indices: 34353791--34353858 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
34353781 ATATAAAAAT
*
34353791 AATTATA-TTAAGAATATTATTA
1 AATTATATTTAATAATATTATTA
* * *
34353813 AATTATATGTTATTATTTTTATTA
1 AATTATAT-TTAATAATATTATTA
34353837 AATTATATTTAATAATAATTAT
1 AATTATATTTAATAAT-ATTAT
34353859 ATTAAAATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
22 7 0.19
23 6 0.17
24 23 0.64
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (23 bp):
AATTATATTTAATAATATTATTA
Found at i:34353892 original size:61 final size:62
Alignment explanation
Indices: 34353788--34353916 Score: 188
Period size: 61 Copynumber: 2.1 Consensus size: 62
34353778 TTAATATAAA
* * * *
34353788 AATAATTATATTAAGAATATTATTAAATTATATGTTATTATTTTTATTAAATTATATTTAAT
1 AATAATTATATTAAGAATATGATTAAATTATATATTATCATTTTTATTAAATTATATTCAAT
* *
34353850 AATAATTATATTAA-AATATGATTAAATTATTTATTATCATTTTTATTAAATTGTATTCAAT
1 AATAATTATATTAAGAATATGATTAAATTATATATTATCATTTTTATTAAATTATATTCAAT
*
34353911 GATAAT
1 AATAAT
34353917 CCTATTATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
61 46 0.77
62 14 0.23
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (62 bp):
AATAATTATATTAAGAATATGATTAAATTATATATTATCATTTTTATTAAATTATATTCAAT
Found at i:34360298 original size:33 final size:33
Alignment explanation
Indices: 34360261--34360327 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
34360251 GTTTTTAGAA
*
34360261 TTTGAATTAA-TTAAATTAAGTTATTTGATTTTT
1 TTTGAATTAATTTAAA-TAAGTAATTTGATTTTT
34360294 TTTGAATTAATTTAAATAAGTAATTTGATTTTT
1 TTTGAATTAATTTAAATAAGTAATTTGATTTTT
34360327 T
1 T
34360328 GAATTCGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (33 bp):
TTTGAATTAATTTAAATAAGTAATTTGATTTTT
Found at i:34361553 original size:16 final size:16
Alignment explanation
Indices: 34361519--34361550 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
34361509 TATTTAAATT
34361519 ATTTTTTAAAATATAA
1 ATTTTTTAAAATATAA
34361535 ATTTTTT-AAATATAA
1 ATTTTTTAAAATATAA
34361550 A
1 A
34361551 ATTAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTTTTAAAATATAA
Found at i:34362618 original size:12 final size:12
Alignment explanation
Indices: 34362576--34362644 Score: 59
Period size: 12 Copynumber: 5.5 Consensus size: 12
34362566 TAGAAATTAA
*
34362576 AATTATTTAA-T
1 AATTTTTTAATT
*
34362587 AATTTTATTATTT
1 AATTTT-TTAATT
*
34362600 CAATTTTTTAAAT
1 -AATTTTTTAATT
*
34362613 AATTTTATTATTT
1 AATTTT-TTAATT
34362626 CAATTTTTTAATT
1 -AATTTTTTAATT
34362639 AATTTT
1 AATTTT
34362645 ATATTAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
11 5 0.11
12 15 0.33
13 14 0.30
14 12 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTTTTTAATT
Found at i:34362618 original size:26 final size:26
Alignment explanation
Indices: 34362576--34362646 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
34362566 TAGAAATTAA
*
34362576 AATTATTT-AATAATTTTATTATTTC
1 AATTTTTTAAATAATTTTATTATTTC
34362601 AATTTTTTAAATAATTTTATTATTTC
1 AATTTTTTAAATAATTTTATTATTTC
*
34362627 AATTTTTTAATTAATTTTAT
1 AATTTTTTAAATAATTTTAT
34362647 ATTAAAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 7 0.16
26 36 0.84
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (26 bp):
AATTTTTTAAATAATTTTATTATTTC
Found at i:34363919 original size:15 final size:15
Alignment explanation
Indices: 34363899--34363928 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34363889 ATTACCCTCT
34363899 TAAAAACTTTAATCA
1 TAAAAACTTTAATCA
34363914 TAAAAACTTTAATCA
1 TAAAAACTTTAATCA
34363929 CATTAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAAACTTTAATCA
Found at i:34364531 original size:31 final size:30
Alignment explanation
Indices: 34364496--34364556 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
34364486 TGAGTTCGTA
*
34364496 AAATT-ATTGACATATATATTTATTTATAAAG
1 AAATTAATTGAAATA-ATATTTATTT-TAAAG
34364527 AAATTAGATTGAAATAATATTTATTTTAAA
1 AAATTA-ATTGAAATAATATTTATTTTAAA
34364557 ATTTAGTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 9 0.33
32 10 0.37
33 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.44
Consensus pattern (30 bp):
AAATTAATTGAAATAATATTTATTTTAAAG
Found at i:34377195 original size:21 final size:21
Alignment explanation
Indices: 34377169--34377211 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
34377159 TTTTTGCTCT
34377169 TAAGTTGGATATGAGCAAAAC
1 TAAGTTGGATATGAGCAAAAC
34377190 TAAGTTGGATATGAGCAAAAC
1 TAAGTTGGATATGAGCAAAAC
34377211 T
1 T
34377212 TATGATCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (21 bp):
TAAGTTGGATATGAGCAAAAC
Found at i:34386607 original size:82 final size:82
Alignment explanation
Indices: 34386465--34386644 Score: 247
Period size: 82 Copynumber: 2.2 Consensus size: 82
34386455 AAACTGAAAA
* * *
34386465 AAATAAGTGAGTCCAACTCTAGTTGAATTAACCAACAAATAATCCGTCAAATCCTGGCACCCAGT
1 AAAT-AGTGAGCCCAGCTCTAGTTGAATTAACCAACAAATAATCCATCAAATCCTGGCACCCAGT
*
34386530 GCCTAGCGGATAAACCGC
65 GCCTAGCGGATAAACAGC
* * * *
34386548 AATTAGTGAGCCCAGCTCTAGTTGGATTAACCAACAAATAA-CCTATCAAGTCTTGGCACCCAGT
1 AAATAGTGAGCCCAGCTCTAGTTGAATTAACCAACAAATAATCC-ATCAAATCCTGGCACCCAGT
34386612 GCCTAGCGGATAAACAGC
65 GCCTAGCGGATAAACAGC
*
34386630 AAAT-GTGTGCCCAGC
1 AAATAGTGAGCCCAGC
34386645 ACTACTCAAT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
81 12 0.14
82 71 0.83
83 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (82 bp):
AAATAGTGAGCCCAGCTCTAGTTGAATTAACCAACAAATAATCCATCAAATCCTGGCACCCAGTG
CCTAGCGGATAAACAGC
Found at i:34387178 original size:2 final size:2
Alignment explanation
Indices: 34387171--34387219 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
34387161 CAACTATTTA
34387171 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
34387213 AC AT AT A
1 AT AT AT A
34387220 CAATTGAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:34388740 original size:21 final size:21
Alignment explanation
Indices: 34388716--34388763 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
34388706 GGATATAAGG
* *
34388716 ATACGAGAAGGAAAATTTGAT
1 ATACGACAACGAAAATTTGAT
* * *
34388737 ATACAACATCTAAAATTTGAT
1 ATACGACAACGAAAATTTGAT
34388758 ATACGA
1 ATACGA
34388764 ACAGAAGTGT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.15, T:0.27
Consensus pattern (21 bp):
ATACGACAACGAAAATTTGAT
Found at i:34388972 original size:23 final size:23
Alignment explanation
Indices: 34388916--34389003 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
34388906 TCATTAACAT
*
34388916 TGTTCATGAACATGTTCAATTATA
1 TGTTCATGAACATGTTCGATTA-A
* *
34388940 TGTTTATGAACATGTTCGTTTAA
1 TGTTCATGAACATGTTCGATTAA
* *
34388963 TGTTCGTGAACATATTCGATTAA
1 TGTTCATGAACATGTTCGATTAA
*
34388986 -GTTAAATGAACATGTTCG
1 TGTT-CATGAACATGTTCG
34389004 TGAACATTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.06
23 31 0.58
24 19 0.36
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (23 bp):
TGTTCATGAACATGTTCGATTAA
Found at i:34388973 original size:47 final size:46
Alignment explanation
Indices: 34388916--34389004 Score: 117
Period size: 47 Copynumber: 1.9 Consensus size: 46
34388906 TCATTAACAT
* *
34388916 TGTTCATGAACATGTTCAATTATATGTT-TATGAACATGTTCGTTTAA
1 TGTTCATGAACATATTCAATTA-A-GTTAAATGAACATGTTCGTTTAA
* *
34388963 TGTTCGTGAACATATTCGATTAAGTTAAATGAACATGTTCGT
1 TGTTCATGAACATATTCAATTAAGTTAAATGAACATGTTCGT
34389005 GAACATTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 3 0.08
46 15 0.41
47 19 0.51
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (46 bp):
TGTTCATGAACATATTCAATTAAGTTAAATGAACATGTTCGTTTAA
Found at i:34397558 original size:25 final size:25
Alignment explanation
Indices: 34397530--34397578 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
34397520 CAGATTAACG
*
34397530 CTCTTACGAGCCAAACAGAATATCA
1 CTCTTACAAGCCAAACAGAATATCA
* *
34397555 CTCTTACAAGCTAGACAGAATATC
1 CTCTTACAAGCCAAACAGAATATC
34397579 TTCATCGTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.27, G:0.12, T:0.22
Consensus pattern (25 bp):
CTCTTACAAGCCAAACAGAATATCA
Found at i:34398893 original size:8 final size:8
Alignment explanation
Indices: 34398880--34398928 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
34398870 AATTAATTAT
34398880 TTTTAAAA
1 TTTTAAAA
34398888 TTTTAAAA
1 TTTTAAAA
**
34398896 TTAAAAAA
1 TTTTAAAA
*
34398904 TTATAAAA
1 TTTTAAAA
*
34398912 ATTTAAAA
1 TTTTAAAA
34398920 TTATTAAAA
1 TT-TTAAAA
34398929 AAAATTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
8 28 0.82
9 6 0.18
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TTTTAAAA
Found at i:34399474 original size:31 final size:31
Alignment explanation
Indices: 34399431--34399489 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
34399421 TCCTTTCCTA
* * *
34399431 TTAACTTTTTTTTTTTTTATTTCATATTGTT
1 TTAACTTTTTTTTGTTTTAATTAATATTGTT
*
34399462 TTAAGTTTTTTTTGTTTTAATTAATATT
1 TTAACTTTTTTTTGTTTTAATTAATATT
34399490 TTTGACATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.71
Consensus pattern (31 bp):
TTAACTTTTTTTTGTTTTAATTAATATTGTT
Found at i:34399875 original size:18 final size:18
Alignment explanation
Indices: 34399827--34399881 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
34399817 AATGTAGATG
*
34399827 AAAATAATAATATTTG-T
1 AAAATAATAATATTTGAA
* **
34399844 AATATTTTATATATTTGAA
1 AAAATAATA-ATATTTGAA
34399863 AAAATAATAATATTTGAA
1 AAAATAATAATATTTGAA
34399881 A
1 A
34399882 TAATTATTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
17 6 0.21
18 17 0.59
19 6 0.21
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
AAAATAATAATATTTGAA
Found at i:34401751 original size:43 final size:42
Alignment explanation
Indices: 34401658--34401757 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 42
34401648 TAGTGGGTGG
*
34401658 TTTT-CACGTAGCTTCCTTCTTTATCATTTCTTGGAAGTAGT
1 TTTTCCACGTAGCTTCCTTCTTTATCATTTCTTGGAAGTAGA
* * *
34401699 TTTTCCCACGTAGCTTCCTTCTTTGTCGTTTCTT-GAATGTGGCA
1 TTTT-CCACGTAGCTTCCTTCTTTATCATTTCTTGGAA-GTAG-A
34401743 TTTTCCACGTAGCTT
1 TTTTCCACGTAGCTT
34401758 TCTCCTTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
41 4 0.08
42 3 0.06
43 40 0.78
44 4 0.08
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.47
Consensus pattern (42 bp):
TTTTCCACGTAGCTTCCTTCTTTATCATTTCTTGGAAGTAGA
Found at i:34409579 original size:21 final size:23
Alignment explanation
Indices: 34409537--34409583 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
34409527 TTTAATATGT
* *
34409537 ATTTTTTATTTCATGTTGTTTTA
1 ATTTTTTAATTCATGCTGTTTTA
34409560 ATTTTTTAATTCAT-CT-TTTTA
1 ATTTTTTAATTCATGCTGTTTTA
34409581 ATT
1 ATT
34409584 AATAACTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 1 0.05
23 13 0.59
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.68
Consensus pattern (23 bp):
ATTTTTTAATTCATGCTGTTTTA
Found at i:34412630 original size:28 final size:28
Alignment explanation
Indices: 34412599--34412664 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
34412589 CGAAAGAGTG
34412599 TTATTCTATATTCTAGC-TCAAGAGAGCC
1 TTATTCTATATTCTAGCTTCAA-AGAGCC
* * * * *
34412627 TTATTATGTATTCTGGCTTGAAAGAGCG
1 TTATTCTATATTCTAGCTTCAAAGAGCC
34412655 TTATTCTATA
1 TTATTCTATA
34412665 ACTGGCTCGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
28 27 0.90
29 3 0.10
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (28 bp):
TTATTCTATATTCTAGCTTCAAAGAGCC
Found at i:34415300 original size:6 final size:6
Alignment explanation
Indices: 34415289--34415316 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
34415279 ATGACAAAAG
34415289 TCTTCA TCTTCA TCTTCA TCTTCA TCTT
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTT
34415317 AAAGCCACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.32, G:0.00, T:0.54
Consensus pattern (6 bp):
TCTTCA
Found at i:34417267 original size:14 final size:15
Alignment explanation
Indices: 34417240--34417268 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
34417230 TATTGAACAT
34417240 AATTAATAATTTTTA
1 AATTAATAATTTTTA
34417255 AATTAAT-ATTTTTA
1 AATTAATAATTTTTA
34417269 TATACATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTAATAATTTTTA
Found at i:34423334 original size:58 final size:58
Alignment explanation
Indices: 34423220--34423334 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
34423210 ATCAACAAAC
* * *
34423220 TAAACCCAAATATTTTTAAACTCAAATATAATTTTATACTTCAAAAACATTTATAAAT
1 TAAACCCAAATATTTTTAAACTCAAATATAATTTTATACCTCAAAAACACTCATAAAT
*
34423278 TAAACCCAAATATTTTTAAACTCAAATATAATTTTATTCCT-AAATAACACTCATAAA
1 TAAACCCAAATATTTTTAAACTCAAATATAATTTTATACCTCAAA-AACACTCATAAA
34423335 CAACTCTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 3 0.06
58 49 0.94
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.37
Consensus pattern (58 bp):
TAAACCCAAATATTTTTAAACTCAAATATAATTTTATACCTCAAAAACACTCATAAAT
Found at i:34425133 original size:21 final size:21
Alignment explanation
Indices: 34425109--34425148 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
34425099 TATTTCACTT
34425109 TTATAAT-ATCTAATCTCATTA
1 TTATAATAAT-TAATCTCATTA
*
34425130 TTATTATAATTAATCTCAT
1 TTATAATAATTAATCTCAT
34425149 CGTTATCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (21 bp):
TTATAATAATTAATCTCATTA
Found at i:34425154 original size:21 final size:21
Alignment explanation
Indices: 34425119--34425161 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
34425109 TTATAATATC
* *
34425119 TAATCTCATTATTATTATAAT
1 TAATCTCATCATTATCATAAT
*
34425140 TAATCTCATCGTTATCATAAT
1 TAATCTCATCATTATCATAAT
34425161 T
1 T
34425162 TCAAACAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (21 bp):
TAATCTCATCATTATCATAAT
Found at i:34425338 original size:3 final size:3
Alignment explanation
Indices: 34425330--34425372 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
34425320 TTCGGTCTTC
34425330 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
34425373 TTATTATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:34427424 original size:59 final size:59
Alignment explanation
Indices: 34427342--34427863 Score: 545
Period size: 59 Copynumber: 8.8 Consensus size: 59
34427332 AAAAATGGAA
* * * * *
34427342 TTTGGTGAAACCGGAGTTAAAAATGGGATTTTGTAAAGTTCGGGGGTAAAATGATAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
* * ** *
34427401 TTTGGTGAAATCGGGGTCAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGAAAATC
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
* * * *
34427460 ATTGTTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTAGTGGGTAAAATGGTAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
* * * *
34427519 TTTGGTGAAACCGGGGTTAAAAATGGGATTTTGGAAAGTTTAGGAGTAAAATGGTGATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
* **
34427578 TTTGGTGAAA-CTGGGTTAAAAATGGAATTTTGGAAAGTTTAAGGGTAAAATGGTAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
* *
34427636 TTTGGTGAAA-CTGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
** * *
34427694 TTT-G-GAAGTTTCAGGGTTAAAAATGGAATTTTGGAATTTTGGAAAGTTTAGGGGTAAAATGGT
1 TTTGGTGAA--ACCGGGGTT--AAA---AA---TGGAATTTTGGAAAGTTTGGGGGTAAAATGGT
34427757 AATT
56 AATT
** * * * *
34427761 TTT-G-GAAGTTTCGGGGATAAAAATGGAATTTTGGGAAGTTTGGGGGTAAAACGATAATT
1 TTTGGTGAA--ACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
** * * *
34427820 TTTGGTGAAACCAAGG-TCAAAATAGAATTTTGGAAAGTTCGGGG
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGG
34427864 ACTAAAGAGC
Statistics
Matches: 403, Mismatches: 47, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
56 3 0.01
57 1 0.00
58 127 0.32
59 206 0.51
60 1 0.00
61 6 0.01
62 2 0.00
64 2 0.00
65 3 0.01
67 52 0.13
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.33
Consensus pattern (59 bp):
TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATT
Found at i:34427518 original size:29 final size:29
Alignment explanation
Indices: 34427479--34427821 Score: 180
Period size: 30 Copynumber: 11.5 Consensus size: 29
34427469 ACCGGGGTTA
34427479 AAAATGG-AATTTTGGAAAG-TTAGTGGGT
1 AAAATGGTAATTTTGGAAAGTTTAG-GGGT
**
34427507 AAAATGGTAATTTTTGGTGAAA---CCGGGGTT
1 AAAATGGTAA-TTTT-G-GAAAGTTTAGGGG-T
* *
34427537 AAAAATGG-GATTTTGGAAAGTTTAGGAGT
1 -AAAATGGTAATTTTGGAAAGTTTAGGGGT
* * *
34427566 AAAATGGTGATTTTTGGTGAAA--CT-GGGTT
1 AAAATGGT-AATTTT-G-GAAAGTTTAGGGGT
*
34427595 AAAAATGG-AATTTTGGAAAGTTTAAGGGT
1 -AAAATGGTAATTTTGGAAAGTTTAGGGGT
* *
34427624 AAAATGGTAATTTTTGGTGAAA--CT-GGGTT
1 AAAATGGTAA-TTTT-G-GAAAGTTTAGGGGT
34427653 AAAAATGG-AATTTTGGAAAGTTTAGGGGT
1 -AAAATGGTAATTTTGGAAAGTTTAGGGGT
*
34427682 AAAATGGTAATTTTTGG-AAGTTTCAGGGTT
1 AAAATGGTAA-TTTTGGAAAGTTT-AGGGGT
34427712 AAAAATGGAATTTTGGAATTTTGGAAAGTTTAGGGGT
1 -AAAATGG-----T--AATTTTGGAAAGTTTAGGGGT
*
34427749 AAAATGGTAATTTTTGG-AAGTTTCGGGGAT
1 AAAATGGTAA-TTTTGGAAAGTTTAGGGG-T
* *
34427779 AAAAATGG-AATTTTGGGAAGTTTGGGGGT
1 -AAAATGGTAATTTTGGAAAGTTTAGGGGT
* *
34427808 AAAACGATAATTTT
1 AAAATGGTAATTTT
34427822 TGGTGAAACC
Statistics
Matches: 247, Mismatches: 26, Indels: 83
0.69 0.07 0.23
Matches are distributed among these distances:
26 8 0.03
27 6 0.02
28 45 0.18
29 60 0.24
30 64 0.26
31 25 0.10
32 12 0.05
36 8 0.03
37 11 0.04
38 8 0.03
ACGTcount: A:0.34, C:0.02, G:0.29, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTGGAAAGTTTAGGGGT
Found at i:34427752 original size:37 final size:38
Alignment explanation
Indices: 34427693--34427767 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
34427683 AAATGGTAAT
*
34427693 TTTTGGAAGTTTCAGGGTTAAAAATGG-AA-TTTTGGAA
1 TTTTGGAAGTTTCAGGGGT-AAAATGGTAATTTTTGGAA
34427730 TTTTGGAAAGTTT-AGGGGTAAAATGGTAATTTTTGGAA
1 TTTTGG-AAGTTTCAGGGGTAAAATGGTAATTTTTGGAA
34427768 GTTTCGGGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 7 0.21
37 13 0.38
38 14 0.41
ACGTcount: A:0.32, C:0.01, G:0.28, T:0.39
Consensus pattern (38 bp):
TTTTGGAAGTTTCAGGGGTAAAATGGTAATTTTTGGAA
Found at i:34427766 original size:67 final size:67
Alignment explanation
Indices: 34427658--34427803 Score: 256
Period size: 67 Copynumber: 2.2 Consensus size: 67
34427648 GGGTTAAAAA
*
34427658 TGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCAGGGTTAAAAATGGAAT
1 TGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCAGGGATAAAAATGGAAT
34427723 TT
66 TT
*
34427725 TGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCGGGGATAAAAATGGAAT
1 TGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCAGGGATAAAAATGGAAT
34427790 TT
66 TT
*
34427792 TGGGAAGTTTGG
1 T-GGAATTTTGG
34427804 GGGTAAAACG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
67 66 0.88
68 9 0.12
ACGTcount: A:0.32, C:0.01, G:0.31, T:0.36
Consensus pattern (67 bp):
TGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGAAGTTTCAGGGATAAAAATGGAAT
TT
Found at i:34428900 original size:3 final size:3
Alignment explanation
Indices: 34428894--34428950 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
34428884 ATTAATAATA
* * * *
34428894 ATT ATT ATT GAAT ATT ATT ACT ATT AATT ATT ATT ATG ATT ATT AGT
1 ATT ATT ATT -ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT
*
34428941 AAT ATT ATT A
1 ATT ATT ATT A
34428951 ATAATATTTA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
3 38 0.88
4 5 0.12
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (3 bp):
ATT
Found at i:34428925 original size:16 final size:16
Alignment explanation
Indices: 34428876--34428929 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
34428866 TCATTAAAAT
*
34428876 TTATTACTATTAATAA
1 TTATTACTATTAATTA
* *
34428892 TAATTATTATTGAA-TA
1 TTATTACTATT-AATTA
34428908 TTATTACTATTAATTA
1 TTATTACTATTAATTA
34428924 TTATTA
1 TTATTA
34428930 TGATTATTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 2 0.06
16 27 0.87
17 2 0.06
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (16 bp):
TTATTACTATTAATTA
Found at i:34429668 original size:16 final size:16
Alignment explanation
Indices: 34429649--34429679 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34429639 GTTTTAAATG
*
34429649 TAAATTTAAATTTAAA
1 TAAATTTAAAATTAAA
34429665 TAAATTTAAAATTAA
1 TAAATTTAAAATTAA
34429680 TTCAAACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATTTAAAATTAAA
Found at i:34429681 original size:11 final size:11
Alignment explanation
Indices: 34429657--34429698 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
34429647 TGTAAATTTA
*
34429657 AATTT-AAATA
1 AATTTAAAATT
34429667 AATTTAAAATT
1 AATTTAAAATT
* *
34429678 AATTCAAACTT
1 AATTTAAAATT
34429689 AATTTAAAAT
1 AATTTAAAAT
34429699 ACAAGTTGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 5 0.19
11 21 0.81
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (11 bp):
AATTTAAAATT
Found at i:34430573 original size:200 final size:198
Alignment explanation
Indices: 34430043--34430623 Score: 851
Period size: 196 Copynumber: 2.9 Consensus size: 198
34430033 TGACCTGGCC
* * * *
34430043 TTCTTCTTTGTGTCTCATCAGGAGGATGACCGCAATCATCTGTTTTAATTCGCTTCTCTGGATCC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGC-ATC-T-TGTTTTAATTCGCTTCTCTGGATCT
* *
34430108 CCTCAGGAAGACGAATTTGGCCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTATTATTGCTT
63 CCTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATTGCTT
** * * * *
34430173 CGACCTGCTTCTCAGTACCTCATCAGGAAGCTGGGTTCGAAGATTCGCTCGCGTTGAGCATTGCG
128 CGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGTGTTAAGCATTGAG
34430238 TTGGTA
193 TTGGTA
* *
34430244 TTCTTCTCTGTATCTCATCAGGAAGTTGA-C-CATCTTGCTTTAATTCGCTTCTCTGGATCTCCT
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCTTGTTTTAATTCGCTTCTCTGGATCTCCT
* *
34430307 CAGGAAGACGAATCTGGTCCACTTCTCTGTGTCTCATCAAGAAGCTAACCTTTTTATTGCTTCGA
66 CAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATTGCTTCGA
* * *
34430372 CCTGTTTCTCAGTGTCTCATCAGGAAACTGGGTTCGAAGATTTGCTCGTGTTAAGCGTTGAGTTG
131 CCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGTGTTAAGCATTGAGTTG
34430437 GTA
196 GTA
* *
34430440 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCCTCGGTTGTTTTAATTCGCTTCTCTAGATCTC
1 TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATC--TTGTTTTAATTCGCTTCTCTGGATCTC
* * * * *
34430505 TTTAGGAAGACAAATTTGGTCCACTTCTCTGTGTCTTATCAGGAAGCTAACCTTTTTATTGGTTC
64 CTCAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATTGCTTC
* *
34430570 GACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATGTGTTCGTGTT
129 GACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGTGTT
34430624 GCTTCAAGGT
Statistics
Matches: 342, Mismatches: 34, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
196 174 0.51
197 2 0.01
198 6 0.02
199 1 0.00
200 134 0.39
201 25 0.07
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (198 bp):
TTCTTCTCTGTATCTCATCAGGAAGATGACCGCATCTTGTTTTAATTCGCTTCTCTGGATCTCCT
CAGGAAGACGAATTTGGTCCACTTCTCTGTGTCTCATCAGGAAGCTAACCTTTTTATTGCTTCGA
CCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGTTCGAAGATTTGCTCGTGTTAAGCATTGAGTTG
GTA
Found at i:34435875 original size:30 final size:30
Alignment explanation
Indices: 34435841--34435941 Score: 88
Period size: 30 Copynumber: 3.4 Consensus size: 30
34435831 TTTGGAAAGT
34435841 TCGAGGGTAAAATGGTAATTTTTAGTGAAA
1 TCGAGGGTAAAATGGTAATTTTTAGTGAAA
*
34435871 TCGA-GGTCAAAAATGG-AA-TTTT-G-AAAA
1 TCGAGGGT--AAAATGGTAATTTTTAGTGAAA
* *
34435898 GTTTGGGGGTAAAATGGTAATTTTTAGTGAAA
1 --TCGAGGGTAAAATGGTAATTTTTAGTGAAA
34435930 TCG-GGGTTAAAA
1 TCGAGGG-TAAAA
34435942 ATGGGATTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 20
0.69 0.06 0.25
Matches are distributed among these distances:
27 3 0.05
28 8 0.14
29 14 0.25
30 20 0.36
31 8 0.14
32 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.32
Consensus pattern (30 bp):
TCGAGGGTAAAATGGTAATTTTTAGTGAAA
Found at i:34435892 original size:59 final size:59
Alignment explanation
Indices: 34435786--34436078 Score: 333
Period size: 59 Copynumber: 5.0 Consensus size: 59
34435776 TTGACTTCTA
* * * *
34435786 AGGGTAAAAATGG-AA-TTTTGGTGAAAATAG-GGTTAAAAATGGGATTTTGGAAAGTTCG
1 AGGGT-AAAATGGTAATTTTTAGTG-AAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTG
* *
34435844 AGGGTAAAATGGTAATTTTTAGTGAAATCGAGGTCAAAAATGGAATTTTGAAAAGTTTG
1 AGGGTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTG
* * * *
34435903 GGGGTAAAATGGTAATTTTTAGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTTA
1 AGGGTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTG
* * * ** *
34435962 AGGGTAAAATGGTGATTTTTTG-GAAGTTTTAGGGTTAAAAATGGAATTTTGGGAAGTTTG
1 AGGGTAAAATGGTAATTTTTAGTGAA-ATCGA-GGTTAAAAATGGAATTTTGGAAAGTTTG
* * * * *
34436022 GGGGTAAAACGATAATTTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTT
1 AGGGTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTT
34436079 CAGGGACTAG
Statistics
Matches: 197, Mismatches: 32, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
57 7 0.04
58 15 0.08
59 128 0.65
60 44 0.22
61 3 0.02
ACGTcount: A:0.35, C:0.02, G:0.29, T:0.33
Consensus pattern (59 bp):
AGGGTAAAATGGTAATTTTTAGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTTG
Found at i:34435951 original size:30 final size:29
Alignment explanation
Indices: 34435790--34435951 Score: 79
Period size: 30 Copynumber: 5.5 Consensus size: 29
34435780 CTTCTAAGGG
* * *
34435790 TAAAAATGGAATTTTGGTGAAAAT-AGGGT
1 TAAAAATGGGATTTTTGTG-AAATCGGGGT
34435819 TAAAAATGGGA-TTTTG-GAAAGTTCGAGGG-
1 TAAAAATGGGATTTTTGTGAAA--TCG-GGGT
* *
34435848 T-AAAATGGTAATTTTTAGTGAAATCGAGGT
1 TAAAAATGG-GATTTTT-GTGAAATCGGGGT
* * * * *
34435878 CAAAAAT-GGAATTTTG-AAAAGTTTGGGGG
1 TAAAAATGGGATTTTTGTGAAA--TCGGGGT
*
34435907 T-AAAATGGTAATTTTTAGTGAAATCGGGGT
1 TAAAAATGG-GATTTTT-GTGAAATCGGGGT
34435937 TAAAAATGGGATTTT
1 TAAAAATGGGATTTT
34435952 GGAAAGTTTA
Statistics
Matches: 97, Mismatches: 19, Indels: 33
0.65 0.13 0.22
Matches are distributed among these distances:
26 3 0.03
27 4 0.04
28 18 0.19
29 24 0.25
30 27 0.28
31 14 0.14
32 7 0.07
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.33
Consensus pattern (29 bp):
TAAAAATGGGATTTTTGTGAAATCGGGGT
Found at i:34436011 original size:31 final size:30
Alignment explanation
Indices: 34435933--34436020 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 30
34435923 AGTGAAATCG
34435933 GGGTTAAAAATGGGA-TTTTGGAAAGTTTAA
1 GGGTTAAAAATGGGATTTTTGG-AAGTTTAA
*
34435963 GGG-T-AAAATGGTGATTTTTTGGAAGTTTTA
1 GGGTTAAAAATGG-GA-TTTTTGGAAGTTTAA
* *
34435993 GGGTTAAAAATGGAATTTTGGGAAGTTT
1 GGGTTAAAAATGGGATTTTTGGAAGTTT
34436021 GGGGGTAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
28 7 0.14
29 3 0.06
30 25 0.50
31 8 0.16
32 7 0.14
ACGTcount: A:0.32, C:0.00, G:0.31, T:0.38
Consensus pattern (30 bp):
GGGTTAAAAATGGGATTTTTGGAAGTTTAA
Found at i:34436047 original size:119 final size:118
Alignment explanation
Indices: 34435801--34436080 Score: 366
Period size: 119 Copynumber: 2.4 Consensus size: 118
34435791 AAAAATGGAA
* *
34435801 TTTTGGTGAAAAT-AGGGTTAAAAATGGGATTTTGGAAAGTTCGAGGGTAAAATGGTAATTTTTA
1 TTTTGGTG-AAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAAGGGTAAAATGGTAATTTTTA
* *
34435865 GTGAAATCGAGGTCAAAAATGGAATTTTGAAAAGTTTGGGGGTAAAATGGTAAT
65 GTGAAATCGAGGTCAAAAATGGAATTTTGAAAAGTTTGGGGGTAAAACGATAAT
* * * *
34435919 TTTTAGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTTAAGGGTAAAATGGTGATTTTTTG
1 TTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAAGGGTAAAATGGTAATTTTTAG
* ** * **
34435984 -GAAGTTTTAGGGTTAAAAATGGAATTTTGGGAAGTTTGGGGGTAAAACGATAAT
66 TGAA-ATCGA-GGTCAAAAATGGAATTTTGAAAAGTTTGGGGGTAAAACGATAAT
* * *
34436038 TTTTGGTGAAATCGAGGTCAAAAATGGAATTTTGGAAAGTTCA
1 TTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCA
34436081 GGGACTAGAG
Statistics
Matches: 140, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
117 7 0.05
118 56 0.40
119 77 0.55
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.34
Consensus pattern (118 bp):
TTTTGGTGAAATCGGGGTTAAAAATGGGATTTTGGAAAGTTCAAGGGTAAAATGGTAATTTTTAG
TGAAATCGAGGTCAAAAATGGAATTTTGAAAAGTTTGGGGGTAAAACGATAAT
Found at i:34437109 original size:3 final size:3
Alignment explanation
Indices: 34437094--34437168 Score: 78
Period size: 3 Copynumber: 24.0 Consensus size: 3
34437084 TCATTAAAAT
* * *
34437094 TTA TTA CTA TTA TTA TTAA TTA TTA TTGA ATA TTA TTA CTA TTAA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TT-A TTA TTA TTA TTA TT-A TTA
* *
34437142 TTA TTA TTA TTA TTA GTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
34437169 ATAATATTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
3 52 0.87
4 8 0.13
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:34437119 original size:13 final size:12
Alignment explanation
Indices: 34437094--34437168 Score: 78
Period size: 13 Copynumber: 6.0 Consensus size: 12
34437084 TCATTAAAAT
*
34437094 TTATTACTATTA
1 TTATTATTATTA
34437106 TTATTAATTATTA
1 TTATT-ATTATTA
*
34437119 TTGAATATTATTA
1 TT-ATTATTATTA
*
34437132 CTATTAATTATTA
1 TTATT-ATTATTA
34437145 TTATTATTATTA
1 TTATTATTATTA
* *
34437157 GTAATATTATTA
1 TTATTATTATTA
34437169 ATAATATTTA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
12 24 0.45
13 27 0.51
14 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (12 bp):
TTATTATTATTA
Found at i:34437143 original size:16 final size:16
Alignment explanation
Indices: 34437094--34437153 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
34437084 TCATTAAAAT
34437094 TTATTACTATT-ATTA
1 TTATTACTATTAATTA
*
34437109 TTAATTATTATTGAA-TA
1 TT-ATTACTATT-AATTA
34437126 TTATTACTATTAATTA
1 TTATTACTATTAATTA
*
34437142 TTATTATTATTA
1 TTATTACTATTA
34437154 TTAGTAATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
15 4 0.11
16 29 0.76
17 4 0.11
18 1 0.03
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (16 bp):
TTATTACTATTAATTA
Found at i:34437170 original size:9 final size:9
Alignment explanation
Indices: 34437104--34437176 Score: 74
Period size: 9 Copynumber: 7.8 Consensus size: 9
34437094 TTATTACTAT
34437104 TATTATTAA
1 TATTATTAA
34437113 TTATTATTGAA
1 -TATTATT-AA
*
34437124 TATTATTAC
1 TATTATTAA
*
34437133 TATTAATTAT
1 TATT-ATTAA
*
34437143 TATTATTAT
1 TATTATTAA
*
34437152 TATTAGTAA
1 TATTATTAA
34437161 TATTATTAA
1 TATTATTAA
*
34437170 TAATATT
1 TATTATT
34437177 TAAAAGGTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
9 31 0.56
10 22 0.40
11 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (9 bp):
TATTATTAA
Found at i:34437890 original size:17 final size:17
Alignment explanation
Indices: 34437868--34437930 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
34437858 TTTTAAATGT
34437868 ATTTAAATTTAAAACAA
1 ATTTAAATTTAAAACAA
*
34437885 ATTTAAATTT-AAATAA
1 ATTTAAATTTAAAACAA
* **
34437901 ATTTAAAATTAATTCAA
1 ATTTAAATTTAAAACAA
*
34437918 ACTT-AATTTAAAA
1 ATTTAAATTTAAAA
34437931 TCTAAGTTGG
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAAATTTAAAACAA
Found at i:34437914 original size:27 final size:27
Alignment explanation
Indices: 34437871--34437923 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
34437861 TAAATGTATT
* *
34437871 TAAATTTAAAACAAATTTAAATTTAAA
1 TAAATTTAAAACAAATTCAAACTTAAA
**
34437898 TAAATTTAAAATTAATTCAAACTTAA
1 TAAATTTAAAACAAATTCAAACTTAA
34437924 TTTAAAATCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (27 bp):
TAAATTTAAAACAAATTCAAACTTAAA
Found at i:34438280 original size:20 final size:20
Alignment explanation
Indices: 34438257--34438310 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
34438247 AGAAGCATAC
34438257 TTGTATCGGTAGAACTGAAG
1 TTGTATCGGTAGAACTGAAG
** *
34438277 TTGTATCAATAGAAGTGAAG
1 TTGTATCGGTAGAACTGAAG
* *
34438297 TTCTACCGGTAGAA
1 TTGTATCGGTAGAA
34438311 ATCCCAGGGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (20 bp):
TTGTATCGGTAGAACTGAAG
Found at i:34438544 original size:20 final size:20
Alignment explanation
Indices: 34438499--34438551 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
34438489 GTCTTCAAGG
* * *
34438499 TATCGGTAAAACTGAAGTTG
1 TATCGGTAGAAGTGAAGTTC
*
34438519 TGTCGGTAGAAGTGAAGTTC
1 TATCGGTAGAAGTGAAGTTC
34438539 TATCGGTAGAAGT
1 TATCGGTAGAAGT
34438552 CTCAGGCCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (20 bp):
TATCGGTAGAAGTGAAGTTC
Found at i:34444579 original size:218 final size:217
Alignment explanation
Indices: 34444104--34444893 Score: 970
Period size: 219 Copynumber: 3.6 Consensus size: 217
34444094 ACTAACAGGC
* * *
34444104 CGACAATAAA-ATATGTAGAAAAGTTAATGATTGTCGTATCGCTTCAATATTCAATCACAT-AGA
1 CGACAATAAATATAAG--GAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGA-A
* * * * * * * *
34444167 AACGTG--T--GATTCATTAATGGAAAAGTCACAAATCCCCAAAAATCAGAACGCTTATTACCAT
63 AACGTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCAC
* * * *
34444228 GCATGCTCCTAACATACGCTAATTATAAGTATCAGA-TAAC-TTCAAGGTCATCACTCTTGTTCC
128 ACATGTTCCTAACATACGCTAATTATAAGTATCA-ATTAACTTTCAAGGTCGTCACTCATGTTCC
* *
34444291 CAACATTATGACTGTCACTAGCAAAT
192 CAACATTATGGCTGTCACTAACAAAT
* * *
34444317 CGACAATAAATATGAGGAAAAGTTAATGATTGTCGTATCGCTTCAATACTCAATCACATGAAAAT
1 CGACAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGAAAAC
* * * *
34444382 GTGTATCACATTTATTAACGCAAAAGTCGCAAATCCCAAAAACTCAAAACGTTTATTACCACACA
66 GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
* *
34444447 TGTTCCTAACATACGCTAATTATAAGCATCAATTGACTTTCAAGGTCGTCACTCATGTTCCCAAC
131 TGTTCCTAACATACGCTAATTATAAGTATCAATTAACTTTCAAGGTCGTCACTCATGTTCCCAAC
* * * *
34444512 GTTCTGGCTGTTCATTAATAAAT
196 ATTATGGCTG-TCACTAACAAAT
* *
34444535 CGACAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAGTCACATGGAAAC
1 CGACAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGAAAAC
* * * *
34444600 GTGTATCACATTTATTAATGCAAAATTCGCAAAACCCAAAAAATCGAAATGCTTATTACCACGCA
66 GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
* * * * *
34444665 TGTTCTTAACATATGCTAATCATAAGTACCAATTAACCTTTCAAGGTCGTCACTCATGTTTCCAA
131 TGTTCCTAACATACGCTAATTATAAGTATCAATTAA-CTTTCAAGGTCGTCACTCATGTTCCCAA
*
34444730 CATAATGGCTGCTCACTAACAAA-
195 CATTATGGCTG-TCACTAACAAAT
* * * ** *
34444753 CTATTAATATATATGTGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAA
1 CGA-CAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGAAAA
** *
34444818 TATGTATCAC-TTTCATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAATGCTTATTACCACA
65 CGTGTATCACATTT-ATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACA
34444882 CATGTTCCTAAC
129 CATGTTCCTAAC
34444894 GTACTTTAAT
Statistics
Matches: 501, Mismatches: 64, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
212 48 0.10
213 11 0.02
214 4 0.01
215 1 0.00
216 78 0.16
217 32 0.06
218 161 0.32
219 166 0.33
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (217 bp):
CGACAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGAAAAC
GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
TGTTCCTAACATACGCTAATTATAAGTATCAATTAACTTTCAAGGTCGTCACTCATGTTCCCAAC
ATTATGGCTGTCACTAACAAAT
Found at i:34444813 original size:219 final size:217
Alignment explanation
Indices: 34444104--34444939 Score: 990
Period size: 218 Copynumber: 3.9 Consensus size: 217
34444094 ACTAACAGGC
* * *
34444104 CGACAATAAAATATGTA-GAAAAGTTAATGATTGTCGTATCGCTTCAATATTCAATCACATAGAA
1 CGACAAT-AAATATG-AGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAA
* * * * * * * **
34444168 ACGTG--T--GATTCATTAATGGAAAAGTCACAAATCCCCAAAAATCAGAACGCTTATTACCATG
64 ACGTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACA
* * * * *
34444229 CATGCTCCTAACATACGCTAATTATAAGTATCAGA-TAAC-TTCAAGGTCATCACTCTTGTTCCC
129 CATGTTCCTAACATACGCTAATCATAAGTACCA-ATTAACTTTCAAGGTCGTCACTCATGTTCCC
* *
34444292 AACATTATGACTGTCACTAGCAAAT
193 AACATTATGGCTGTCACTAACAAAT
* * *
34444317 CGACAATAAATATGAGGAAAAGTTAATGATTGTCGTATCGCTTCAATACTCAATCACATGAAAAT
1 CGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAAC
* * * *
34444382 GTGTATCACATTTATTAACGCAAAAGTCGCAAATCCCAAAAACTCAAAACGTTTATTACCACACA
66 GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
* * * *
34444447 TGTTCCTAACATACGCTAATTATAAGCATCAATTGACTTTCAAGGTCGTCACTCATGTTCCCAAC
131 TGTTCCTAACATACGCTAATCATAAGTACCAATTAACTTTCAAGGTCGTCACTCATGTTCCCAAC
* * * *
34444512 GTTCTGGCTGTTCATTAATAAAT
196 ATTATGGCTG-TCACTAACAAAT
* *
34444535 CGACAATAAATATAAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAGTCACATGGAAAC
1 CGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAAC
* * * *
34444600 GTGTATCACATTTATTAATGCAAAATTCGCAAAACCCAAAAAATCGAAATGCTTATTACCACGCA
66 GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
* * *
34444665 TGTTCTTAACATATGCTAATCATAAGTACCAATTAACCTTTCAAGGTCGTCACTCATGTTTCCAA
131 TGTTCCTAACATACGCTAATCATAAGTACCAATTAA-CTTTCAAGGTCGTCACTCATGTTCCCAA
*
34444730 CATAATGGCTGCTCACTAACAAA-
195 CATTATGGCTG-TCACTAACAAAT
* * * *
34444753 CTATTAATATATATGTGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAA
1 CGA-CAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAA
** *
34444818 TATGTATCAC-TTTCATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAATGCTTATTACCACA
65 CGTGTATCACATTT-ATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACA
* ** ** * * *
34444882 CATGTTCCTAACGTACTTTAATCAT-AGTACTGATTGACCATTCAAGGTTGTCACTCAT
129 CATGTTCCTAACATACGCTAATCATAAGTACCAATT-AACTTTCAAGGTCGTCACTCAT
34444940 ATCCCTAAAA
Statistics
Matches: 538, Mismatches: 73, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
211 1 0.00
212 55 0.10
213 7 0.01
214 1 0.00
215 1 0.00
216 78 0.14
217 32 0.06
218 187 0.35
219 176 0.33
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.30
Consensus pattern (217 bp):
CGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATGGAAAC
GTGTATCACATTTATTAATGCAAAAGTCGCAAAACCCAAAAAATCAAAACGCTTATTACCACACA
TGTTCCTAACATACGCTAATCATAAGTACCAATTAACTTTCAAGGTCGTCACTCATGTTCCCAAC
ATTATGGCTGTCACTAACAAAT
Found at i:34444928 original size:437 final size:430
Alignment explanation
Indices: 34444104--34444939 Score: 1083
Period size: 437 Copynumber: 1.9 Consensus size: 430
34444094 ACTAACAGGC
* * *
34444104 CGACAATAAAATATGTAGAAAAGTTAATGATTGTCGTATCGCTTCAATATTCAATCACATAGAAA
1 CGACAATAAAATAAG-AGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATAGAAA
* * * * *
34444169 CGTGTGATTCATTAATGGAAAAGTCACAAATCCCCAAAAATCAGAACGCTTATTACCATGCATGC
65 CGTGTCATTCATTAATGCAAAAGTCACAAAACCCAAAAAATCAGAACGCTTATTACCACGCATGC
* * * *
34444234 TCCTAACATACGCTAATTATAAGTATCAGATAACTTCAAGGTCATCACTCTTGTTCCCAACATTA
130 TCCTAACATACGCTAATCATAAGTACCAGATAACTTCAAGGTCATCACTCATGTTCCCAACATAA
* *
34444299 TGACTGTCACTAGCAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCGTATCGCTTCAAT
195 TGACTGTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAAT
* * *
34444364 ACTCAATCACATGAAAATGTGTATCACATTTATTAACGCAAAAGTCGCAAATCCCAAAAACTCAA
260 ACTCAATCACATGAAAATATGTATCACATTTATTAACGCAAAAGTCGCAAAACCCAAAAAATCAA
* * *
34444429 AACGTTTATTACCACACATGTTCCTAACATACGCTAATTATAAGCATCAATTGACTTTCAAGGTC
325 AACGCTTATTACCACACATGTTCCTAACATACGCTAATCATAAGCATCAATTGACATTCAAGGTC
34444494 GTCACTCATGTTCCCAACGTTCTGGCTGTTCATTAATAAAT
390 GTCACTCATGTTCCCAACGTTCTGGCTGTTCATTAATAAAT
* *
34444535 CGACAATAAATATAAG-GAAAAGTTAATGATTGTCATATCGCTTCAATACTCAGTCACATGGAAA
1 CGACAATAAA-ATAAGAGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATAGAAA
* * * *
34444599 CGTGTATCACATTTATTAATGCAAAATTCGCAAAACCCAAAAAATC-GAAATGCTTATTACCACG
65 CGTG--T--CATTCATTAATGCAAAAGTCACAAAACCCAAAAAATCAG-AACGCTTATTACCACG
* * * * *
34444663 CATGTTCTTAACATATGCTAATCATAAGTACCA-ATTAACCTTTCAAGGTCGTCACTCATGTTTC
125 CATGCTCCTAACATACGCTAATCATAAGTACCAGA-TAA-C-TTCAAGGTCATCACTCATGTTCC
* * * * *
34444727 CAACATAATGGCTGCTCACTAACAAA-CTATTAATATATATGTGGAAAAGTTAATGATTGTCATA
187 CAACATAATGACTG-TCACTAACAAATCGA-CAATAAATATGAGGAAAAGTTAATGATTGTCATA
* *
34444791 TCGCTTCAATACTCAATCACATGGAAATATGTATCAC-TTTCATTAATGCAAAAGTCGCAAAACC
250 TCGCTTCAATACTCAATCACATGAAAATATGTATCACATTT-ATTAACGCAAAAGTCGCAAAACC
* * ** * *
34444855 CAAAAAATCAAAATGCTTATTACCACACATGTTCCTAACGTACTTTAATCAT-AGTA-CTGATTG
314 CAAAAAATCAAAACGCTTATTACCACACATGTTCCTAACATACGCTAATCATAAGCATC-AATTG
*
34444918 ACCATTCAAGGTTGTCACTCAT
378 A-CATTCAAGGTCGTCACTCAT
34444940 ATCCCTAAAA
Statistics
Matches: 346, Mismatches: 45, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
430 48 0.14
431 10 0.03
432 5 0.01
433 2 0.01
434 75 0.22
435 2 0.01
436 45 0.13
437 159 0.46
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.30
Consensus pattern (430 bp):
CGACAATAAAATAAGAGAAAAGTTAATGATTGTCATATCGCTTCAATACTCAATCACATAGAAAC
GTGTCATTCATTAATGCAAAAGTCACAAAACCCAAAAAATCAGAACGCTTATTACCACGCATGCT
CCTAACATACGCTAATCATAAGTACCAGATAACTTCAAGGTCATCACTCATGTTCCCAACATAAT
GACTGTCACTAACAAATCGACAATAAATATGAGGAAAAGTTAATGATTGTCATATCGCTTCAATA
CTCAATCACATGAAAATATGTATCACATTTATTAACGCAAAAGTCGCAAAACCCAAAAAATCAAA
ACGCTTATTACCACACATGTTCCTAACATACGCTAATCATAAGCATCAATTGACATTCAAGGTCG
TCACTCATGTTCCCAACGTTCTGGCTGTTCATTAATAAAT
Found at i:34450206 original size:19 final size:19
Alignment explanation
Indices: 34450145--34450244 Score: 92
Period size: 19 Copynumber: 5.2 Consensus size: 19
34450135 CAATACAGCA
* * *
34450145 TATTGCTCTCATGAGCCAG
1 TATTGCTCTTACGAGCTAG
* ** *
34450164 TATTTGCTCTCACGAGAAAA
1 TA-TTGCTCTTACGAGCTAG
*
34450184 TATTACTCTTACGAGCTAG
1 TATTGCTCTTACGAGCTAG
* *
34450203 TATTGCCCTTACGAGCCAG
1 TATTGCTCTTACGAGCTAG
*
34450222 TATTGCTCTTATGAGCTAG
1 TATTGCTCTTACGAGCTAG
34450241 TATT
1 TATT
34450245 TGCTAATTCC
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
19 50 0.77
20 15 0.23
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (19 bp):
TATTGCTCTTACGAGCTAG
Found at i:34461750 original size:40 final size:40
Alignment explanation
Indices: 34461684--34461873 Score: 129
Period size: 41 Copynumber: 4.7 Consensus size: 40
34461674 CGAAAATGTT
* ** * *
34461684 GCAAAAAGT-AAAGCAATAGCAACGTTTTTTCATAAACTCC
1 GCAAAAGGTAAAAGCAATAGCGGCGTTTTATCA-AAACACC
34461724 GCAAAAGG-AAAAGCAATAGCGGCG-TTTATGACAAAACACC
1 GCAAAAGGTAAAAGCAATAGCGGCGTTTTAT--CAAAACACC
* * * * *
34461764 GCAAAAGGTAAGAGCACTAGTGGCG-TTTATGAGAAAACGCC
1 GCAAAAGGTAAAAGCAATAGCGGCGTTTTAT--CAAAACACC
* * * *
34461805 GCAAAAGGTAAGAGCACTAGCGGCG-TTTATGAGAAAACGCC
1 GCAAAAGGTAAAAGCAATAGCGGCGTTTTAT--CAAAACACC
* * *
34461846 GTAAAAGGTAAGAGCATTAGCGGCGTTT
1 GCAAAAGGTAAAAGCAATAGCGGCGTTT
34461874 ATGAGAAAAC
Statistics
Matches: 132, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 4 0.03
40 34 0.26
41 92 0.70
42 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (40 bp):
GCAAAAGGTAAAAGCAATAGCGGCGTTTTATCAAAACACC
Found at i:34461794 original size:41 final size:41
Alignment explanation
Indices: 34461717--34461910 Score: 282
Period size: 41 Copynumber: 4.8 Consensus size: 41
34461707 GTTTTTTCAT
* * * *
34461717 AAACTCCGCAAAAGG-AAAAGCAATAGCGGCGTTTATGACA
1 AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
* *
34461757 AAACACCGCAAAAGGTAAGAGCACTAGTGGCGTTTATGAGA
1 AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
34461798 AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
1 AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
* *
34461839 AAACGCCGTAAAAGGTAAGAGCATTAGCGGCGTTTATGAGA
1 AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
** *
34461880 AAACGTTGCAAAAGGTAAGAGCATTAGCGGC
1 AAACGCCGCAAAAGGTAAGAGCACTAGCGGC
34461911 ATTTTCCTAT
Statistics
Matches: 141, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
40 14 0.10
41 127 0.90
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.16
Consensus pattern (41 bp):
AAACGCCGCAAAAGGTAAGAGCACTAGCGGCGTTTATGAGA
Found at i:34464373 original size:28 final size:27
Alignment explanation
Indices: 34464336--34464399 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
34464326 TATAATATAG
*
34464336 ATAG-AACACAACGAATATGTAGCACAA
1 ATAGAAACACAAC-AACATGTAGCACAA
34464363 ATAGAAACAC-ACAACATGTAGCACAA
1 ATAGAAACACAACAACATGTAGCACAA
* *
34464389 ACAGAGACACA
1 ATAGAAACACA
34464400 CCTCAAATGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 21 0.66
27 6 0.19
28 5 0.16
ACGTcount: A:0.53, C:0.22, G:0.14, T:0.11
Consensus pattern (27 bp):
ATAGAAACACAACAACATGTAGCACAA
Found at i:34464711 original size:21 final size:22
Alignment explanation
Indices: 34464681--34464734 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
34464671 AAATTCAATG
*
34464681 GTCAAGGTCAAT-GGTCAACAA
1 GTCAAAGTCAATAGGTCAACAA
* *
34464702 GTCAAAGTCAATAGGTTAACAG
1 GTCAAAGTCAATAGGTCAACAA
*
34464724 GTTAAAGTCAA
1 GTCAAAGTCAA
34464735 CGAATCGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (22 bp):
GTCAAAGTCAATAGGTCAACAA
Found at i:34464759 original size:22 final size:22
Alignment explanation
Indices: 34464731--34464788 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
34464721 CAGGTTAAAG
34464731 TCAACGAATCGGGTCGGGTCGA
1 TCAACGAATCGGGTCGGGTCGA
* * * *
34464753 TCAACGAGTCGGATCGGGTTGG
1 TCAACGAATCGGGTCGGGTCGA
*
34464775 TCAACGGA-CGGGTC
1 TCAACGAATCGGGTC
34464789 AAACCGAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.21, C:0.22, G:0.38, T:0.19
Consensus pattern (22 bp):
TCAACGAATCGGGTCGGGTCGA
Found at i:34465598 original size:31 final size:30
Alignment explanation
Indices: 34465531--34465605 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
34465521 ACTAAGATCA
*
34465531 AAATTTAGTCCTTAAAATTTTTCAAAATTTC
1 AAATTTAGTCCTTAAAA-TTTTCAAAAATTC
*
34465562 TAATTTAGTCCTTAAAA-TTTCATAACAATTC
1 AAATTTAGTCCTTAAAATTTTCA-AA-AATTC
*
34465593 AAATTTAATCCTT
1 AAATTTAGTCCTT
34465606 TTACCAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 5 0.13
30 2 0.05
31 31 0.82
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.44
Consensus pattern (30 bp):
AAATTTAGTCCTTAAAATTTTCAAAAATTC
Found at i:34467471 original size:16 final size:16
Alignment explanation
Indices: 34467450--34467482 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
34467440 AATACAAGTG
34467450 ACACTTCTACCCATAC
1 ACACTTCTACCCATAC
34467466 ACACTTCTACCCATAC
1 ACACTTCTACCCATAC
34467482 A
1 A
34467483 AGTGTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.24
Consensus pattern (16 bp):
ACACTTCTACCCATAC
Found at i:34473126 original size:16 final size:18
Alignment explanation
Indices: 34473095--34473132 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
34473085 TTTCCTTCTT
34473095 TTATATTTATTAATATTA
1 TTATATTTATTAATATTA
34473113 TTATA-TTA-TAATATTA
1 TTATATTTATTAATATTA
34473129 TTAT
1 TTAT
34473133 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
17 3 0.15
18 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATATTTATTAATATTA
Found at i:34477067 original size:27 final size:27
Alignment explanation
Indices: 34477043--34477104 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
34477033 TTTAATTTGG
*
34477043 AGTTAAATTGATTTTAAATTTATTTAA
1 AGTTAAATTGATCTTAAATTTATTTAA
* *
34477070 ATTTAAATTTATCTTAAATTTAAATTTAA
1 AGTTAAATTGATCTTAAATTT--ATTTAA
34477099 A-TTAAA
1 AGTTAAA
34477105 ATTAAAATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 18 0.60
28 5 0.17
29 7 0.23
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (27 bp):
AGTTAAATTGATCTTAAATTTATTTAA
Found at i:34477073 original size:6 final size:6
Alignment explanation
Indices: 34477055--34477112 Score: 61
Period size: 6 Copynumber: 10.2 Consensus size: 6
34477045 TTAAATTGAT
34477055 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAAA
* *
34477100 TTAAAA TTAAAA T
1 TTTAAA TTTAAA T
34477113 ACTAAACATT
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
4 6 0.13
5 2 0.04
6 36 0.78
7 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (6 bp):
TTTAAA
Found at i:34477074 original size:16 final size:17
Alignment explanation
Indices: 34477055--34477097 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
34477045 TTAAATTGAT
34477055 TTTAAATTTAT-TTAAA
1 TTTAAATTTATCTTAAA
34477071 TTTAAATTTATCTTAAA
1 TTTAAATTTATCTTAAA
34477088 TTTAAATTTA
1 TTTAAATTTA
34477098 AATTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATCTTAAA
Found at i:34477079 original size:23 final size:24
Alignment explanation
Indices: 34477053--34477110 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
34477043 AGTTAAATTG
*
34477053 ATTTTAAATT-TATTTAAATTTAA
1 ATTTTAAATTAAATTTAAATTTAA
**
34477076 A-TTTATCTTAAATTTAAATTTAA
1 ATTTTAAATTAAATTTAAATTTAA
*
34477099 A-TTAAAATTAAA
1 ATTTTAAATTAAA
34477111 ATACTAAACA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
22 6 0.21
23 22 0.79
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTTTAAATTAAATTTAAATTTAA
Found at i:34477103 original size:11 final size:11
Alignment explanation
Indices: 34477045--34477110 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
34477035 TAATTTGGAG
* *
34477045 TTAAATTGATT
1 TTAAATTAAAT
*
34477056 TTAAATT-TAT
1 TTAAATTAAAT
34477066 TTAAATTTAAAT
1 TTAAA-TTAAAT
**
34477078 TTATCTTAAAT
1 TTAAATTAAAT
34477089 TTAAATTTAAAT
1 TTAAA-TTAAAT
*
34477101 TAAAATTAAA
1 TTAAATTAAA
34477111 ATACTAAACA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
10 6 0.14
11 23 0.52
12 15 0.34
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:34477103 original size:17 final size:17
Alignment explanation
Indices: 34477045--34477110 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
34477035 TAATTTGGAG
* *
34477045 TTAAATTGATTTTAAAT
1 TTAAATTAAATTTAAAT
*
34477062 TT-ATTTAAATTTAAAT
1 TTAAATTAAATTTAAAT
**
34477078 TTATCTTAAATTTAAAT
1 TTAAATTAAATTTAAAT
*
34477095 TTAAATTAAAATTAAA
1 TTAAATTAAATTTAAA
34477111 ATACTAAACA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
16 13 0.32
17 27 0.68
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
TTAAATTAAATTTAAAT
Found at i:34478188 original size:16 final size:16
Alignment explanation
Indices: 34478164--34478194 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34478154 GACTTGAGTT
*
34478164 TTTTTCCAGATCTGGA
1 TTTTACCAGATCTGGA
34478180 TTTTACCAGATCTGG
1 TTTTACCAGATCTGG
34478195 GTTCGAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (16 bp):
TTTTACCAGATCTGGA
Found at i:34479002 original size:29 final size:29
Alignment explanation
Indices: 34478928--34479186 Score: 150
Period size: 29 Copynumber: 8.9 Consensus size: 29
34478918 GTTTATAGGT
* *
34478928 CCCCGAAACTTCCAAAATTACCATTTTAT
1 CCCCGAAACTACCAAAATTACCATTTTAA
***
34478957 CCCC-AAACCTTTTAAAATT-CCATTTTAA
1 CCCCGAAA-CTACCAAAATTACCATTTTAA
34478985 CCCCGAAACTACCAAAAATTACCATTTT-A
1 CCCCGAAACTACC-AAAATTACCATTTTAA
34479014 CCCTCG-AACTTA-CAAAATT-CCATTTTTAA
1 CCC-CGAAAC-TACCAAAATTACCA-TTTTAA
***
34479043 CCCCGATTTTACCAAAAATTACCATTTT-A
1 CCCCGAAACTACC-AAAATTACCATTTTAA
* *
34479072 CCCTC-AAACTTTCCAAAATT-TCATTTTAA
1 CCC-CGAAAC-TACCAAAATTACCATTTTAA
** *
34479101 CCCCG-ATTTCATCAAAAATTACCATTTT-A
1 CCCCGAAACT-A-CCAAAATTACCATTTTAA
*
34479130 CCCCTG-AACTTTCCAAAATT-CCATTTTTAA
1 CCCC-GAAAC-TACCAAAATTACCA-TTTTAA
**
34479160 CCCC-AATTTCACCAAAATTACCATTTT
1 CCCCGAAACT-ACCAAAATTACCATTTT
34479187 GCCCCCGGGT
Statistics
Matches: 178, Mismatches: 26, Indels: 52
0.70 0.10 0.20
Matches are distributed among these distances:
27 4 0.02
28 43 0.24
29 86 0.48
30 41 0.23
31 4 0.02
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.34
Consensus pattern (29 bp):
CCCCGAAACTACCAAAATTACCATTTTAA
Found at i:34479041 original size:58 final size:57
Alignment explanation
Indices: 34478941--34479191 Score: 296
Period size: 58 Copynumber: 4.3 Consensus size: 57
34478931 CGAAACTTCC
* **
34478941 AAAATTACCATTTTATCCCCAAACCTTT-TAAAATTCCATTTTAACCCCGAAACTACCA
1 AAAATTACCATTTTA-CCCCAAA-CTTTCCAAAATTCCATTTTAACCCCGAATTTACCA
* * *
34478999 AAAATTACCATTTTACCCTCGAAC-TTACAAAATTCCATTTTTAACCCCGATTTTACCA
1 AAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCA-TTTTAACCCCGAATTTACCA
* *
34479057 AAAATTACCATTTTACCCTCAAACTTTCCAAAATTTCATTTTAACCCCG-ATTTCATCA
1 AAAATTACCATTTTACCC-CAAACTTTCCAAAATTCCATTTTAACCCCGAATTT-ACCA
*
34479115 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCC-AATTTCACC-
1 AAAATTACCATTTTACCCC-AAACTTTCCAAAATTCCA-TTTTAACCCCGAATTT-ACCA
*
34479173 AAAATTACCATTTTGCCCC
1 AAAATTACCATTTTACCCC
34479192 CGGGTATCCA
Statistics
Matches: 171, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
56 2 0.01
57 17 0.10
58 124 0.73
59 28 0.16
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.34
Consensus pattern (57 bp):
AAAATTACCATTTTACCCCAAACTTTCCAAAATTCCATTTTAACCCCGAATTTACCA
Found at i:34479177 original size:116 final size:115
Alignment explanation
Indices: 34478939--34479186 Score: 342
Period size: 116 Copynumber: 2.1 Consensus size: 115
34478929 CCCGAAACTT
*
34478939 CCAAAATTACCATTTTATCCCCAAACCTTTTAAAATTCCATTTTAACCCCGAAACTACCAAAAAT
1 CCAAAATTACCATTTTATCCCCAAACCTTTCAAAATTCCATTTTAACCCCGAAACTACCAAAAAT
* *
34479004 TACCATTTTACCCTCGAACTTACAAAATTCCATTTTTAACCCCGATTTTA
66 TACCATTTTACCCTCGAACTTACAAAATTCCATTTTTAACCCCAATTTCA
* ** *
34479054 CCAAAAATTACCATTTTA-CCCTCAAA-CTTTCCAAAATTTCATTTTAACCCCG-ATTTCATCAA
1 CC-AAAATTACCATTTTATCCC-CAAACCTTT-CAAAATTCCATTTTAACCCCGAAACT-ACCAA
*
34479116 AAATTACCATTTTACCC-CTGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
62 AAATTACCATTTTACCCTC-GAAC-TTACAAAATTCCATTTTTAACCCCAATTTCA
34479171 CCAAAATTACCATTTT
1 CCAAAATTACCATTTT
34479187 GCCCCCGGGT
Statistics
Matches: 119, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
115 12 0.10
116 77 0.65
117 30 0.25
ACGTcount: A:0.35, C:0.29, G:0.02, T:0.34
Consensus pattern (115 bp):
CCAAAATTACCATTTTATCCCCAAACCTTTCAAAATTCCATTTTAACCCCGAAACTACCAAAAAT
TACCATTTTACCCTCGAACTTACAAAATTCCATTTTTAACCCCAATTTCA
Found at i:34479212 original size:58 final size:57
Alignment explanation
Indices: 34478939--34479228 Score: 259
Period size: 58 Copynumber: 5.0 Consensus size: 57
34478929 CCCGAAACTT
* * **
34478939 CCAAAATTACCATTTTATCCCCAAACCTTT-TAAAATTCCA-TTTTAACCCCGAAACT-A
1 CCAAAATTACCATTTTA-CCCCAGA-CTTTCCAAAATTCCATTTTTAACCCC-AATTTCA
* * *
34478996 CCAAAAATTACCATTTTACCCTC-GAAC-TTACAAAATTCCATTTTTAACCCCGATTTTA
1 CC-AAAATTACCATTTTACCC-CAG-ACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * *
34479054 CCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTTCA-TTTTAACCCCGATTTCA
1 CC-AAAATTACCATTTTACCC-CAGACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* *
34479112 TCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
1 -CCAAAATTACCATTTTACCCCAG-ACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
* * ** * * **
34479171 CCAAAATTACCATTTTGCCCCCGGGTATCCAAAAGTCCCATTTTCCACCCCAATTTCA
1 CCAAAATTACCATTTTACCCCAGACTTTCCAAAA-TTCCATTTTTAACCCCAATTTCA
34479229 TCGTTTCTAA
Statistics
Matches: 198, Mismatches: 23, Indels: 23
0.81 0.09 0.09
Matches are distributed among these distances:
56 2 0.01
57 26 0.13
58 142 0.72
59 28 0.14
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.33
Consensus pattern (57 bp):
CCAAAATTACCATTTTACCCCAGACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
Found at i:34491448 original size:76 final size:75
Alignment explanation
Indices: 34491205--34491864 Score: 817
Period size: 76 Copynumber: 8.8 Consensus size: 75
34491195 ATAAGAGCAC
* * * * * *
34491205 AGCAAGATTTTTTTCTGTCCGCTTGAAATTGGAGTAAAGTTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTGAA
34491270 ATTG-AGTAAG
65 ATTGAAGTAAG
* * *
34491280 AGCAACATCGTTTCCTATCCTCTTGAAATTGAAGAAGTAGAGTGGATAACAAGT-TATTATCTCT
1 AGCAAGATCTTTTCCTATCCTCTTGAAATT---GAAGTAAAGTGGATAACAAGTCT-TTATCTCT
*
34491344 GAAATTGAAGGAAG
62 GAAATTGAAGTAAG
* * * *
34491358 AGCAACATCGTTTCCTATCCTCTTGAAATTGAAGTAGAGTAAGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGT-GGATAACAAGTCTTTATCTCTGAA
34491423 ATTGAAGTAAG
65 ATTGAAGTAAG
* * * *
34491434 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGACAACAAGTCGTCATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTG-A
34491499 AATTGAAGTAAG
64 AATTGAAGTAAG
* * * * *
34491511 AGCCAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTTTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTGAA
34491576 ATTGAAGTAAG
65 ATTGAAGTAAG
*
34491587 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTGAA
34491652 ATTGAAGTAAG
65 ATTGAAGTAAG
*
34491663 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAG--------TCT---
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTGAA
*
34491717 -TTGAAGTAAA
65 ATTGAAGTAAG
** *
34491727 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATTACGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCTGAA
*
34491792 ATTGATGTAAG
65 ATTGAAGTAAG
* *
34491803 AGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGATAGCAAGTCTTTATCTCT
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGATAACAAGTCTTTATCTCT
34491865 CTAAAGAGCA
Statistics
Matches: 522, Mismatches: 42, Indels: 41
0.86 0.07 0.07
Matches are distributed among these distances:
64 58 0.11
68 3 0.01
72 3 0.01
75 34 0.07
76 285 0.55
77 97 0.19
78 42 0.08
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (75 bp):
AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTGGATAACAAGTCTTTATCTCTGAAA
TTGAAGTAAG
Found at i:34491502 original size:153 final size:152
Alignment explanation
Indices: 34491205--34491864 Score: 855
Period size: 153 Copynumber: 4.4 Consensus size: 152
34491195 ATAAGAGCAC
* * * * * *
34491205 AGCAAGATTTTTTTCTGTCCGCTTGAAATTGGAGTAAAGTTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAA
* * *
34491270 ATTG-AGTAAGAGCAACATCGTTTCCTATCCTCTTGAAATTGAAG-AAGTAGAGTGGATAACAAG
66 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAA--AG-CTGGATAACAAG
*
34491333 T-TATTATCTCTGAAATTGAAGGAAG
128 TCT-TTATCTCTGAAATTGAAGTAAG
* * * **
34491358 AGCAACATCGTTTCCTATCCTCTTGAAATTGAAGTAGAGTAAGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAA
* * * *
34491423 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGACAACAAGTCG
66 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGTCT
*
34491488 TCATCTCTGAAAATTGAAGTAAG
131 TTATCTCTG-AAATTGAAGTAAG
* * * * *
34491511 AGCCAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAGTTGGATAACACGTCTTTATCTTTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAA
*
34491576 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCT
66 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGTCT
34491641 TTATCTCTGAAATTGAAGTAAG
131 TTATCTCTGAAATTGAAGTAAG
* *
34491663 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAG--------TCT---
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAA
* ** *
34491717 -TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATTACGTCT
66 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGTCT
*
34491781 TTATCTCTGAAATTGATGTAAG
131 TTATCTCTGAAATTGAAGTAAG
* *
34491803 AGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGATAGCAAGTCTTTATCTCT
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCT
34491865 CTAAAGAGCA
Statistics
Matches: 448, Mismatches: 47, Indels: 29
0.85 0.09 0.06
Matches are distributed among these distances:
140 130 0.29
144 2 0.00
148 3 0.01
152 77 0.17
153 197 0.44
154 38 0.08
155 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (152 bp):
AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCTTTATCTCTGAA
ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGTCT
TTATCTCTGAAATTGAAGTAAG
Found at i:34491606 original size:229 final size:225
Alignment explanation
Indices: 34491205--34491864 Score: 851
Period size: 229 Copynumber: 2.9 Consensus size: 225
34491195 ATAAGAGCAC
* * * * * * *
34491205 AGCAAGATTTTTTTCTGTCCGCTTGAAATTGGAGTAAAGTTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTC-GTATCTCTGAA
* * *
34491270 ATTG-AGTAAGAGCAACATCGTTTCCTATCCTCTTGAAATTGAAGAAGTAGAGTGGATAACAAGT
65 ATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATT---GAAGTAGAGTGGATAACACGT
* * * *
34491334 -TATTATCTCTGAAATTGAAGGAAGAGCAACATCGTTTCCTATCCTCTTGAAATTGAAGTAGAGT
127 CT-TTATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGT
*
34491398 AAGATAACAAGTCTTTATCTCTGAAATTGAAGTAAG
191 -GGATAACAAGTCTTTATCTCTGAAATTGAAGTAAG
* *
34491434 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGACAACAAGTCGTCATCTCTGAA
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCGT-ATCTCTG-A
* *
34491499 AATTGAAGTAAGAGCCAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAGTTGGATAACACGTC
64 AATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTC
*
34491564 TTTATCTTTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTG
128 TTTATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TG
*
34491629 GATATCAAGTCTTTATCTCTGAAATTGAAGTAAG
192 GATAACAAGTCTTTATCTCTGAAATTGAAGTAAG
* *
34491663 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAA---G----TCT----
1 AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCGTATCTCTGAAA
* * **
34491717 TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATTACGTCTT
66 TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTT
* *
34491782 TATCTCTGAAATTGATGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGA
130 TATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAG-TGGA
*
34491847 TAGCAAGTCTTTATCTCT
194 TAACAAGTCTTTATCTCT
34491865 CTAAAGAGCA
Statistics
Matches: 388, Mismatches: 37, Indels: 25
0.86 0.08 0.06
Matches are distributed among these distances:
216 136 0.35
221 3 0.01
226 1 0.00
228 10 0.03
229 198 0.51
230 8 0.02
231 32 0.08
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (225 bp):
AGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTTGGATAACAAGTCGTATCTCTGAAA
TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAGAGTGGATAACACGTCTTT
ATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGTGGATA
ACAAGTCTTTATCTCTGAAATTGAAGTAAG
Found at i:34491754 original size:64 final size:64
Alignment explanation
Indices: 34491653--34491858 Score: 250
Period size: 64 Copynumber: 3.0 Consensus size: 64
34491643 ATCTCTGAAA
34491653 TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCT
1 TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCT
* * *
34491717 TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATTACGTCTT
1 TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTC--
34491782 TAT
64 --T
* * *
34491785 CTCTGAAATTGATGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGATAG
1 -T-TG--A---A-GTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAT
34491850 CAAGTCT
58 CAAGTCT
34491857 TT
1 TT
34491859 ATCTCTCTAA
Statistics
Matches: 121, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
64 60 0.50
68 1 0.01
69 1 0.01
70 3 0.02
71 1 0.01
72 2 0.02
75 1 0.01
76 52 0.43
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (64 bp):
TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCT
Found at i:34491829 original size:140 final size:140
Alignment explanation
Indices: 34491577--34491858 Score: 501
Period size: 140 Copynumber: 2.0 Consensus size: 140
34491567 ATCTTTGAAA
*
34491577 TTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTT
1 TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTT
*
34491642 TATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGA
66 TATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGCTGGA
*
34491707 TATCAAGTCT
131 TAGCAAGTCT
* *
34491717 TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATTACGTCTT
1 TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTT
* *
34491782 TATCTCTGAAATTGATGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGTTGGA
66 TATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGCTGGA
34491847 TAGCAAGTCT
131 TAGCAAGTCT
34491857 TT
1 TT
34491859 ATCTCTCTAA
Statistics
Matches: 135, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
140 135 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (140 bp):
TTGAAGTAAAAGCAAGATCTTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATATCAAGTCTT
TATCTCTGAAATTGAAGTAAGAGCAAGATCTTTTCCCATCCTCTTGAAATTGAAGTAAAGCTGGA
TAGCAAGTCT
Found at i:34492178 original size:6 final size:6
Alignment explanation
Indices: 34492160--34492279 Score: 108
Period size: 6 Copynumber: 20.2 Consensus size: 6
34492150 TTAAATTGAT
34492160 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTAATTA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAA--A
* *
34492207 TTTAAA TTT-AC TTTAAA TTTAAA TTTAATTA TTTAAA TTT-AC TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA--A TTTAAA TTTAAA TTTAAA
* * *
34492255 TTTAAA TTAAAA TTAAAA TTAAAA T
1 TTTAAA TTTAAA TTTAAA TTTAAA T
34492280 ACTAAACATT
Statistics
Matches: 98, Mismatches: 5, Indels: 22
0.78 0.04 0.18
Matches are distributed among these distances:
4 6 0.06
5 10 0.10
6 68 0.69
7 2 0.02
8 12 0.12
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTAAA
Found at i:34492213 original size:31 final size:31
Alignment explanation
Indices: 34492150--34492262 Score: 164
Period size: 31 Copynumber: 3.8 Consensus size: 31
34492140 TAATTTGGAG
* *
34492150 TTAAATTGATTTTAAATTT--ATTTAA--AT
1 TTAAATTTACTTTAAATTTAAATTTAATTAT
34492177 TTAAATTTA-TCTTAAATTTAAATTTAATTAT
1 TTAAATTTACT-TTAAATTTAAATTTAATTAT
34492208 TTAAATTTACTTTAAATTTAAATTTAATTAT
1 TTAAATTTACTTTAAATTTAAATTTAATTAT
34492239 TTAAATTTACTTTAAATTTAAATT
1 TTAAATTTACTTTAAATTTAAATT
34492263 AAAATTAAAA
Statistics
Matches: 79, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
26 1 0.01
27 16 0.20
29 6 0.08
31 55 0.70
32 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.55
Consensus pattern (31 bp):
TTAAATTTACTTTAAATTTAAATTTAATTAT
Found at i:34492264 original size:11 final size:11
Alignment explanation
Indices: 34492150--34492277 Score: 78
Period size: 11 Copynumber: 10.9 Consensus size: 11
34492140 TAATTTGGAG
* *
34492150 TTAAATTGATT
1 TTAAATTAAAT
*
34492161 TTAAATT-TAT
1 TTAAATTAAAT
34492171 TTAAATTTAAAT
1 TTAAA-TTAAAT
**
34492183 TTATCTTAAAT
1 TTAAATTAAAT
34492194 TTAAATTTAATTAT
1 TTAAA-TTAA--AT
* *
34492208 TTAAATTTACT
1 TTAAATTAAAT
34492219 TTAAATTTAAAT
1 TTAAA-TTAAAT
34492231 TTAATTATTTAAAT
1 TTAA--A-TTAAAT
**
34492245 TTACTTTAAAT
1 TTAAATTAAAT
34492256 TTAAATTAAAAT
1 TTAAATT-AAAT
*
34492268 TAAAATTAAA
1 TTAAATTAAA
34492278 ATACTAAACA
Statistics
Matches: 92, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
10 6 0.07
11 38 0.41
12 27 0.29
13 3 0.03
14 18 0.20
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (11 bp):
TTAAATTAAAT
Found at i:34493352 original size:16 final size:16
Alignment explanation
Indices: 34493328--34493358 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34493318 GACTTGAGTT
*
34493328 TTTTTCCAGATCTGGA
1 TTTTACCAGATCTGGA
34493344 TTTTACCAGATCTGG
1 TTTTACCAGATCTGG
34493359 GTTCGAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (16 bp):
TTTTACCAGATCTGGA
Found at i:34494033 original size:163 final size:163
Alignment explanation
Indices: 34493850--34494165 Score: 524
Period size: 163 Copynumber: 1.9 Consensus size: 163
34493840 TTCAATTTAA
*
34493850 TCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCATTTTTTGACTTATTTATTCATTTA
1 TCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGACTTATTTATTCATTTA
* * *
34493915 GTCCCCGACATTTTTAATTTGTTTTAATTTAATCCCTAAATCAACTTTTATTTAATTACAAAATT
66 GTCCCCGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTCTTATTTAATCACAAAATT
34493980 GGCCCAACAATTTTTCAAGGTTTTATAAATTAG
131 GGCCCAACAATTTTTCAAGGTTTTATAAATTAG
* *
34494013 TCCTTTGACTGTTTGACTGCACCAGGGGCTGCCACGTGTCACTTTTTGGCTTATTTATTCATTTA
1 TCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGACTTATTTATTCATTTA
* * * *
34494078 GTCCCTGACTTTTTTAATTTGTTTTAATTTAATCCCCAAATCGACTCTTATTTAATCATAAAATT
66 GTCCCCGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTCTTATTTAATCACAAAATT
* *
34494143 GGCCTAAGAATTTTTCAAGGTTT
131 GGCCCAACAATTTTTCAAGGTTT
34494166 ACAATTTAAT
Statistics
Matches: 141, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
163 141 1.00
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.43
Consensus pattern (163 bp):
TCCTTTGACTGTTTGACTGCACCAGAGGCTGCCACGTGTCACTTTTTGACTTATTTATTCATTTA
GTCCCCGACATTTTTAATTTGTTTTAATTTAATCCCCAAATCAACTCTTATTTAATCACAAAATT
GGCCCAACAATTTTTCAAGGTTTTATAAATTAG
Found at i:34494317 original size:29 final size:28
Alignment explanation
Indices: 34494285--34494423 Score: 79
Period size: 28 Copynumber: 4.8 Consensus size: 28
34494275 CCAAACCTTT
*
34494285 TAAAATTCCATTTTTAACCCTGAAACTAA
1 TAAAATTCCATTTTTAACCCCG-AACTAA
* **
34494314 TAAAAATTACCA-TTTTACCCCCGAACTTC
1 T-AAAATT-CCATTTTTAACCCCGAACTAA
* * **
34494343 CAAAATTCCATTTTTAACTCCGATTTCACCA
1 TAAAATTCCATTTTTAACCCCGAACT-A--A
**
34494374 -AAAATTACCA-TTTT-ACCCTCGAACTTC
1 TAAAATT-CCATTTTTAACCC-CGAACTAA
*
34494401 CAAAATTCCATTTTTAACCCCGA
1 TAAAATTCCATTTTTAACCCCGA
34494424 TTTCACCAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 23
0.68 0.13 0.19
Matches are distributed among these distances:
27 6 0.07
28 30 0.36
29 12 0.14
30 29 0.35
31 6 0.07
ACGTcount: A:0.35, C:0.28, G:0.04, T:0.33
Consensus pattern (28 bp):
TAAAATTCCATTTTTAACCCCGAACTAA
Found at i:34494358 original size:58 final size:58
Alignment explanation
Indices: 34494257--34494567 Score: 387
Period size: 58 Copynumber: 5.4 Consensus size: 58
34494247 CGAAATTTCC
* * ** * ** *
34494257 AAAATTACCATTTTATCCCCAAACCTTTTAAAATTCCATTTTTAACCCTGA-AACTAATA
1 AAAATTACCATTTTACCCCCGAA-CTTCCAAAATTCCATTTTTAACCCCGATTTC-AACA
* *
34494316 AAAATTACCATTTTACCCCCGAACTTCCAAAATTCCATTTTTAACTCCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAATTCCATTTTTAACCCCGATTTCAACA
* *
34494374 AAAATTACCATTTTACCCTCGAACTTCCAAAATTCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAACTTCCAAAATTCCATTTTTAACCCCGATTTCAACA
* * * *
34494432 AAAATTACCATTTTACCCTCAAACTTTCCAAAATTCTATTTTTAACCCCGATTTCATCA
1 AAAATTACCATTTTACCCCCGAAC-TTCCAAAATTCCATTTTTAACCCCGATTTCAACA
* *
34494491 AAAATTACCA-TTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCCTGATTTC-ACC
1 AAAATTACCATTTTACCCCCGAAC-TTCCAAAATTCCATTTTTAACCCCGATTTCAACA
*
34494547 AAAATTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
34494568 GGTATCCAAA
Statistics
Matches: 227, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
56 11 0.05
57 24 0.11
58 128 0.56
59 64 0.28
ACGTcount: A:0.34, C:0.29, G:0.03, T:0.34
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCGAACTTCCAAAATTCCATTTTTAACCCCGATTTCAACA
Found at i:34497511 original size:25 final size:24
Alignment explanation
Indices: 34497482--34497533 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
34497472 TGCTAATATC
* *
34497482 ATATA-ATTCATTACATAAATATTAA
1 ATATACATTAATTA-ATAAA-AGTAA
34497507 ATATACATTAATTAATAAAAGTAA
1 ATATACATTAATTAATAAAAGTAA
34497531 ATA
1 ATA
34497534 AATAACAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 10 0.42
26 7 0.29
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (24 bp):
ATATACATTAATTAATAAAAGTAA
Found at i:34497765 original size:27 final size:27
Alignment explanation
Indices: 34497727--34497799 Score: 137
Period size: 27 Copynumber: 2.7 Consensus size: 27
34497717 TCAGAGTAGT
34497727 CCACGACCCTCAGGGAATTAGGACTGC
1 CCACGACCCTCAGGGAATTAGGACTGC
34497754 CCACGACCCTCAGGGAATTAGGACTGC
1 CCACGACCCTCAGGGAATTAGGACTGC
*
34497781 CCACGACCCTCTGGGAATT
1 CCACGACCCTCAGGGAATT
34497800 GGGGCTAACA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.25, C:0.34, G:0.25, T:0.16
Consensus pattern (27 bp):
CCACGACCCTCAGGGAATTAGGACTGC
Found at i:34509084 original size:17 final size:17
Alignment explanation
Indices: 34509061--34509117 Score: 89
Period size: 17 Copynumber: 3.4 Consensus size: 17
34509051 ACTAAACCTT
34509061 TTTAAATTTATTTTAAGA
1 TTTAAATTTATTTTAA-A
34509079 -TTAAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
*
34509095 TTTAAATTTGTTTTAAA
1 TTTAAATTTATTTTAAA
34509112 TTTAAA
1 TTTAAA
34509118 ATTAATAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
16 1 0.03
17 36 0.97
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:34509767 original size:15 final size:15
Alignment explanation
Indices: 34509747--34509778 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
34509737 AAATATATTA
34509747 AATAATTTTAATAAT
1 AATAATTTTAATAAT
34509762 AATAATTTTAATAAT
1 AATAATTTTAATAAT
34509777 AA
1 AA
34509779 AAATAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATAATTTTAATAAT
Found at i:34510864 original size:30 final size:29
Alignment explanation
Indices: 34510830--34511160 Score: 261
Period size: 30 Copynumber: 11.3 Consensus size: 29
34510820 CGAAAATCAT
34510830 ATTTTGACCCTCAAACTTTCCAAAAATTAC
1 ATTTTGACCCTCAAAC-TTCCAAAAATTAC
* *
34510860 ATTTTAACACTCAAACTTTCCAAAAATTAC
1 ATTTTGACCCTCAAAC-TTCCAAAAATTAC
34510890 ATTTTGACCC-CAAACATTCCAAAAATTAC
1 ATTTTGACCCTCAAAC-TTCCAAAAATTAC
*
34510919 ATTTTGACCAC-AAAACTTCTCAAAAATTAC
1 ATTTTGACC-CTCAAACTTC-CAAAAATTAC
34510949 ATTTTGATCCCT-AAACTTCTCAAAAATTAC
1 ATTTTGA-CCCTCAAACTTC-CAAAAATTAC
* * *
34510979 ATTTTAACCCTCGAACTTCTCAAAAATTCC
1 ATTTTGACCCTCAAACTTC-CAAAAATTAC
* *
34511009 ATTTTTG-CCCTCAAACTTTCAAAAATTCC
1 A-TTTTGACCCTCAAACTTCCAAAAATTAC
* * * *
34511038 ATTTT-TCCCTCAAACTTCTAAAAATCAT
1 ATTTTGACCCTCAAACTTCCAAAAATTAC
* * * * *
34511066 ATTTTTAACC-CGAA-TTCC-CAAATGAC
1 ATTTTGACCCTCAAACTTCCAAAAATTAC
* * *
34511092 ATTTTTACCCTTAAAACTTTCC-AAAATTGC
1 ATTTTGACCC-TCAAAC-TTCCAAAAATTAC
* * *
34511122 ATTTTAACCCT-AAACTCTCTAAAACTT-C
1 ATTTTGACCCTCAAACT-TCCAAAAATTAC
34511150 ATTTTTGACCC
1 A-TTTTGACCC
34511161 CGATTTTTTT
Statistics
Matches: 252, Mismatches: 34, Indels: 31
0.79 0.11 0.10
Matches are distributed among these distances:
26 14 0.06
27 4 0.02
28 39 0.15
29 61 0.24
30 128 0.51
31 6 0.02
ACGTcount: A:0.36, C:0.26, G:0.03, T:0.35
Consensus pattern (29 bp):
ATTTTGACCCTCAAACTTCCAAAAATTAC
Found at i:34510996 original size:60 final size:59
Alignment explanation
Indices: 34510830--34511062 Score: 282
Period size: 59 Copynumber: 3.9 Consensus size: 59
34510820 CGAAAATCAT
*
34510830 ATTTTGACCCTCAAACTTTCCAAAAATTACATTTTAACACTCAAACTT-TCCAAAAATTAC
1 ATTTTGACCCTCAAACTTT-CAAAAATTACATTTTAACCCTCAAACTTCT-CAAAAATTAC
* * *
34510890 ATTTTGACCC-CAAACATTCCAAAAATTACATTTTGACCAC-AAAACTTCTCAAAAATTAC
1 ATTTTGACCCTCAAAC-TTTCAAAAATTACATTTTAACC-CTCAAACTTCTCAAAAATTAC
* *
34510949 ATTTTGATCCCT-AAACTTCTCAAAAATTACATTTTAACCCTCGAACTTCTCAAAAATTCC
1 ATTTTGA-CCCTCAAACTT-TCAAAAATTACATTTTAACCCTCAAACTTCTCAAAAATTAC
* *
34511009 ATTTTTG-CCCTCAAACTTTCAAAAATTCCATTTT-TCCCTCAAACTTCT-AAAAAT
1 A-TTTTGACCCTCAAACTTTCAAAAATTACATTTTAACCCTCAAACTTCTCAAAAAT
34511063 CATATTTTTA
Statistics
Matches: 152, Mismatches: 12, Indels: 21
0.82 0.06 0.11
Matches are distributed among these distances:
57 6 0.04
58 12 0.08
59 67 0.44
60 62 0.41
61 5 0.03
ACGTcount: A:0.38, C:0.26, G:0.03, T:0.34
Consensus pattern (59 bp):
ATTTTGACCCTCAAACTTTCAAAAATTACATTTTAACCCTCAAACTTCTCAAAAATTAC
Found at i:34511535 original size:97 final size:97
Alignment explanation
Indices: 34511399--34511692 Score: 437
Period size: 97 Copynumber: 3.0 Consensus size: 97
34511389 TCCAAAATAT
* * * *
34511399 TTAAAATCGAGGCAATATTCCTTTATTTCGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGT
1 TTAAAA-CGAGGCAATGTTTCTTTATTTTGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGC
*
34511464 GATTTTTCTTCAAATCAGGATAATTGAATACCC
65 GATTTTTCTTCAAATCAGGATAATCGAATACCC
* * *
34511497 TTAAAACGAGGAAATGTTTCTTTATTTTGGGTTATGAAAATTTGTGCCTTAACTTACTAGACGCG
1 TTAAAACGAGGCAATGTTTCTTTATTTTGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCG
* *
34511562 ATTTTTCTTCAAACCGGGATAATCGAATACCC
66 ATTTTTCTTCAAATCAGGATAATCGAATACCC
*
34511594 TTAAAACGAGGCAATGTTTCTTTATCTCT-GGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGC
1 TTAAAACGAGGCAATGTTTCTTTAT-TTTGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGC
* **
34511658 GACTTTTCTTCAAATTTGGATAATCGAATACCC
65 GATTTTTCTTCAAATCAGGATAATCGAATACCC
34511691 TT
1 TT
34511693 TTCCAAGGTT
Statistics
Matches: 177, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
97 169 0.95
98 8 0.05
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (97 bp):
TTAAAACGAGGCAATGTTTCTTTATTTTGGGTTTTGAAAATTTGTGCCTTAACTTACTAGGCGCG
ATTTTTCTTCAAATCAGGATAATCGAATACCC
Found at i:34516590 original size:19 final size:18
Alignment explanation
Indices: 34516568--34516618 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
34516558 ATAATCTTTG
*
34516568 TACTTTTTAATGTTTTTAA
1 TACTTTTT-ATATTTTTAA
34516587 TACTTTTTATATTTTTAA
1 TACTTTTTATATTTTTAA
*
34516605 -ATTTTTTTATATTT
1 TA-CTTTTTATATTT
34516619 AAAAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 1 0.03
18 20 0.69
19 8 0.28
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (18 bp):
TACTTTTTATATTTTTAA
Found at i:34518710 original size:108 final size:108
Alignment explanation
Indices: 34518573--34518778 Score: 331
Period size: 108 Copynumber: 1.9 Consensus size: 108
34518563 AATAAAGAAT
* * * * * *
34518573 ATTTATTGATTTCAAATATGATACTCGATTATTTAGGTTCAAAGAAAAAATTATACCCAGTACGT
1 ATTTATTAATTTCAAATAGGATACTCGATTATTTAAGTTCAAAAAAAAAATCATACCCAATACGT
34518638 TTGAGCACAATTTCTCGAATTCCCTAAATAAAAAAAATCAAAC
66 TTGAGCACAATTTCTCGAATTCCCTAAATAAAAAAAATCAAAC
* * *
34518681 ATTTATTAATTTTACATAGGATACTCGATTATTTAAGTTTAAAAAAAAAATCATACCCAATACGT
1 ATTTATTAATTTCAAATAGGATACTCGATTATTTAAGTTCAAAAAAAAAATCATACCCAATACGT
34518746 TTGAGCACAATTTCTCGAATTCCCTAAATAAAA
66 TTGAGCACAATTTCTCGAATTCCCTAAATAAAA
34518779 TAACATTGCC
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 89 1.00
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (108 bp):
ATTTATTAATTTCAAATAGGATACTCGATTATTTAAGTTCAAAAAAAAAATCATACCCAATACGT
TTGAGCACAATTTCTCGAATTCCCTAAATAAAAAAAATCAAAC
Found at i:34520527 original size:5 final size:5
Alignment explanation
Indices: 34520521--34520579 Score: 50
Period size: 5 Copynumber: 12.0 Consensus size: 5
34520511 GCTCTATTTA
* * * *
34520521 TTTTA TTTTA TTT-G TTTTG TTTTG TTTTG -TTTG GTTTG ATTTTA TTTTG
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG
*
34520570 TTTTT TTTTG
1 TTTTG TTTTG
34520580 GGCCCAGACA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
4 7 0.16
5 35 0.78
6 3 0.07
ACGTcount: A:0.07, C:0.00, G:0.15, T:0.78
Consensus pattern (5 bp):
TTTTG
Found at i:34521135 original size:42 final size:42
Alignment explanation
Indices: 34520999--34521219 Score: 161
Period size: 46 Copynumber: 5.1 Consensus size: 42
34520989 GTTTCTGTGA
*
34520999 GATGGTAG-CTTCAATCTGCCCCTCTTGATTTAGGGGTAAAAGATTG
1 GATGGT-GTCTTCAATCTG-CCCTC-T-AGTTA-GGGTAAAAGATTG
* * * *
34521045 GATAGTAG-CTTCAATCTACCCCTCTTGACTTAAGCGTAAAAGATTG
1 GATGGT-GTCTTCAATCT-GCCCTC-T-AGTT-AGGGTAAAAGATTG
* *
34521091 GATGGTGTCTTTAATATGCCCTCTAGTTAGGGTAAAAGATTG
1 GATGGTGTCTTCAATCTGCCCTCTAGTTAGGGTAAAAGATTG
* * ** *
34521133 GAT-G-G-CTTCAATCT-ACCTCATGGTCGGGGTAAGAGATTG
1 GATGGTGTCTTCAATCTGCCCTC-TAGTTAGGGTAAAAGATTG
34521172 GATGGTGTCTTCAATCTGCCC-C-ATGATTAGGGTAAAAGATTG
1 GATGGTGTCTTCAATCTGCCCTCTA-G-TTAGGGTAAAAGATTG
34521214 GATGGT
1 GATGGT
34521220 CGGGGTAAGA
Statistics
Matches: 143, Mismatches: 22, Indels: 24
0.76 0.12 0.13
Matches are distributed among these distances:
38 4 0.03
39 25 0.17
40 2 0.01
41 3 0.02
42 45 0.31
43 5 0.03
44 1 0.01
45 6 0.04
46 51 0.36
47 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (42 bp):
GATGGTGTCTTCAATCTGCCCTCTAGTTAGGGTAAAAGATTG
Found at i:34521174 original size:39 final size:40
Alignment explanation
Indices: 34521119--34521220 Score: 125
Period size: 42 Copynumber: 2.5 Consensus size: 40
34521109 CCCTCTAGTT
* *
34521119 AGGGTAAAAGATTGGATGG-CTTCAATCTACCTCATGGTC
1 AGGGTAAAAGATTGGATGGTCTTCAATCTACCCCATGATC
* * * *
34521158 GGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCCATGATT
1 AGGGTAAAAGATTGGAT-G-GTCTTCAATCTACCCCATGATC
34521200 AGGGTAAAAGATTGGATGGTC
1 AGGGTAAAAGATTGGATGGTC
34521221 GGGGTAAGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
39 15 0.29
40 4 0.08
41 2 0.04
42 31 0.60
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (40 bp):
AGGGTAAAAGATTGGATGGTCTTCAATCTACCCCATGATC
Found at i:34521269 original size:39 final size:39
Alignment explanation
Indices: 34521215--34521440 Score: 238
Period size: 39 Copynumber: 5.6 Consensus size: 39
34521205 AAAAGATTGG
* *
34521215 ATGGTCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCC
1 ATGGTCGAGGTAAGAGATTGGATGGCTTCAATCTGCCCC
*
34521254 ATGGTCGAGGTAAGAGATTGGATGATGTCTTCAATCTGCACC
1 ATGGTCGAGGTAAGAGATTGGATG--G-CTTCAATCTGCCCC
* *
34521296 ATGATCGAGGTAAGAGATTGGATGGCTTCAATTTGCCCC
1 ATGGTCGAGGTAAGAGATTGGATGGCTTCAATCTGCCCC
* * * *
34521335 ATGGT-TAGGTTAAGAGATTGAAATGATGTCTTTAATTTGCCCC
1 ATGGTCGAGG-TAAGAGATTG----GATGGCTTCAATCTGCCCC
** * *
34521378 ATAATCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCC
1 ATGGTCGAGGTAAGAGATTGGATGGCTTCAATCTGCCCC
* *
34521417 ATGGTCAAGGTAAGAGATTAGATG
1 ATGGTCGAGGTAAGAGATTGGATG
34521441 ATGATGTAAC
Statistics
Matches: 155, Mismatches: 23, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
38 3 0.02
39 83 0.54
40 1 0.01
41 1 0.01
42 35 0.23
43 30 0.19
44 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (39 bp):
ATGGTCGAGGTAAGAGATTGGATGGCTTCAATCTGCCCC
Found at i:34521272 original size:60 final size:63
Alignment explanation
Indices: 34521152--34521277 Score: 179
Period size: 60 Copynumber: 2.0 Consensus size: 63
34521142 AATCTACCTC
*
34521152 ATGGTCGGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCCATGATTAGGGTAAAAGATTGG
1 ATGGTCGGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCCATGATGAGGGTAAAAGATTGG
* * *
34521215 ATGGTCGGGGTAAGAGATTGGAT-G-G-CTTCAGTCTGCCCCATGGTCGA-GGTAAGAGATTGG
1 ATGGTCGGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCCATGAT-GAGGGTAAAAGATTGG
34521275 ATG
1 ATG
34521278 ATGTCTTCAA
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
60 32 0.55
61 2 0.03
62 1 0.02
63 23 0.40
ACGTcount: A:0.24, C:0.13, G:0.36, T:0.27
Consensus pattern (63 bp):
ATGGTCGGGGTAAGAGATTGGATGGTGTCTTCAATCTGCCCCATGATGAGGGTAAAAGATTGG
Found at i:34521298 original size:102 final size:102
Alignment explanation
Indices: 34521120--34521320 Score: 305
Period size: 102 Copynumber: 2.0 Consensus size: 102
34521110 CCTCTAGTTA
* * *
34521120 GGGTAAAAGATTGGATGGCTTCAATCTACCTCATGGTCGGGGTAAGAGATTGGATGGTGTCTTCA
1 GGGTAAAAGATTGGATGGCTTCAATCTACCCCATGGTCGAGGTAAGAGATTGGATGATGTCTTCA
*
34521185 ATCTGCCCCATGATTAG-GGTAAAAGATTGGATGGTCG
66 ATCTGCACCATGA-TAGAGGTAAAAGATTGGATGGTCG
* * *
34521222 GGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCGAGGTAAGAGATTGGATGATGTCTTCA
1 GGGTAAAAGATTGGATGGCTTCAATCTACCCCATGGTCGAGGTAAGAGATTGGATGATGTCTTCA
* *
34521287 ATCTGCACCATGATCGAGGTAAGAGATTGGATGG
66 ATCTGCACCATGATAGAGGTAAAAGATTGGATGG
34521321 CTTCAATTTG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 2 0.02
102 87 0.98
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.27
Consensus pattern (102 bp):
GGGTAAAAGATTGGATGGCTTCAATCTACCCCATGGTCGAGGTAAGAGATTGGATGATGTCTTCA
ATCTGCACCATGATAGAGGTAAAAGATTGGATGGTCG
Found at i:34521406 original size:82 final size:82
Alignment explanation
Indices: 34521219--34521443 Score: 330
Period size: 82 Copynumber: 2.8 Consensus size: 82
34521209 GATTGGATGG
*
34521219 TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCGAGGTAAGAGATTG-GATGATGTC
1 TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCAAGGTAAGAGATTGAGATGATGTC
*
34521283 TTCAATCTGCACCATGA
66 TTCAATCTGCACCATAA
* * * * *
34521300 TCGAGGTAAGAGATTGGATGGCTTCAATTTGCCCCATGGT-TAGGTTAAGAGATTGAAATGATGT
1 TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCAAGG-TAAGAGATTGAGATGATGT
* * *
34521364 CTTTAATTTGCCCCATAA
65 CTTCAATCTGCACCATAA
34521382 TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCAAGGTAAGAGATT-AGATGATG
1 TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCAAGGTAAGAGATTGAGATGATG
34521444 ATGTAACTTC
Statistics
Matches: 127, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 3 0.02
81 54 0.43
82 67 0.53
83 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (82 bp):
TCGGGGTAAGAGATTGGATGGCTTCAGTCTGCCCCATGGTCAAGGTAAGAGATTGAGATGATGTC
TTCAATCTGCACCATAA
Found at i:34521780 original size:49 final size:49
Alignment explanation
Indices: 34521708--34522373 Score: 430
Period size: 49 Copynumber: 13.6 Consensus size: 49
34521698 TTTACAGCTT
* * *
34521708 TAAGATTTGCCTTTGCGGCTTCAATCTACTTCTCTT--CATCT-TCAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCT--TTCCCTTCACATCTCT-AGGGTA
34521757 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* * * * * * *
34521806 TAAGGTTCGCCGTTGTGACTTCAATCTTTTCCTCCACATCTTTAGGGCA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* * * * *
34521855 TGAGATTCGTCGTTGCAGCCTT-AATCTTTCCTTTCACATCTCTAGGGCA
1 TAAGATTCGCCGTTGC-GGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* *** * *
34521904 TGAGATTCATTGTTGCGACTTCAATCTTTCCCTTCACATCTTTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* ** * * * * *
34521953 TAAGGTTCGTTGTTGCGACTTTAACCTTTCCCTCCACGTCTCTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* *** * * * *
34522002 TAAAATTTTTCGTTACGGCTTCAATCTTTCCCTCCGCATCTTTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* * * * * * *
34522051 CAAGATTCGTCATTGCGACTTCAATCTTTCCC-TCTATATGTCTAAGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTC-ACATCTCTAGGGTA
** * * ** * *
34522100 TAAGATTCATCATTACAACTTCAATCTTTCCCTTCACAT-TTTTGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* ** ** * * * * *
34522148 TAAGGTTCTTCGTTGCGATTTCAA-CATTTTCCTCCACGTCTTTAGGGTT
1 TAAGATTCGCCGTTGCGGCTTCAATC-TTTCCCTTCACATCTCTAGGGTA
* * ** * * *
34522197 TAAGGTTTGCTATTGTGGCTTCAACCTTTCCCTTCACTTCTCTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* * * * * * * *
34522246 TAAGGTTAGCCATTGCAGCTTCGACCTTTCCCTCCACGTCTCTAGGGTA
1 TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
* * ** * *
34522295 TAAGATTCGTCATTATGAGCTTCAATCTTTCCC-TCTATATCTCTAAGGTA
1 TAAGATTCGCCGTTGCG-GCTTCAATCTTTCCCTTC-ACATCTCTAGGGTA
** *
34522345 TAAGATTCGTTGTTACGGCTTCAATCTTT
1 TAAGATTCGCCGTTGCGGCTTCAATCTTT
34522374 TTCATCACGT
Statistics
Matches: 493, Mismatches: 112, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
47 7 0.01
48 39 0.08
49 401 0.81
50 46 0.09
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (49 bp):
TAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTA
Found at i:34521870 original size:98 final size:98
Alignment explanation
Indices: 34521744--34522373 Score: 514
Period size: 98 Copynumber: 6.4 Consensus size: 98
34521734 TACTTCTCTT
* * * *
34521744 CATCTTCAGGGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCTTCACATCTCTAGGGTATAA
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATCTTTCCCTCCACATCTCTAGGGTATAA
* * * ** *
34521809 GGTTCGCCGTTGTGACTTCAATCTTTTCCTCCA
66 GATTCGTCATTACGACTTCAATCTTTCCCTCCA
* * * * * * *
34521842 CATCTTTAGGGCATGAGATTCGTCGTTGCAGCCTT-AATCTTTCCTTTCACATCTCTAGGGCATG
1 CATCTTTAGGGTATAAGATTCGTCGTTGC-GACTTCAATCTTTCCCTCCACATCTCTAGGGTATA
* ** * *
34521906 AGATTCATTGTTGCGACTTCAATCTTTCCCTTCA
65 AGATTCGTCATTACGACTTCAATCTTTCCCTCCA
* * * * *
34521940 CATCTTTAGGGTATAAGGTTCGTTGTTGCGACTTTAACCTTTCCCTCCACGTCTCTAGGGTATAA
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATCTTTCCCTCCACATCTCTAGGGTATAA
* ** * * *
34522005 AATTTTTCGTTACGGCTTCAATCTTTCCCTCCG
66 GATTCGTCATTACGACTTCAATCTTTCCCTCCA
* * * * * *
34522038 CATCTTTAGGGTACAAGATTCGTCATTGCGACTTCAATCTTTCCCTCTATATGTCTAAGGTATAA
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATCTTTCCCTCCACATCTCTAGGGTATAA
* * *
34522103 GATTCATCATTACAACTTCAATCTTTCCCTTCA
66 GATTCGTCATTACGACTTCAATCTTTCCCTCCA
* * * * * * * *
34522136 CAT-TTTTGGGTATAAGGTTCTTCGTTGCGATTTCAA-CATTTTCCTCCACGTCTTTAGGGTTTA
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATC-TTTCCCTCCACATCTCTAGGGTATA
* * ** * * *
34522199 AGGTTTG-CTATTGTGGCTTCAACCTTTCCCTTCA
65 AGATTCGTC-ATTACGACTTCAATCTTTCCCTCCA
* * * * * * * * *
34522233 CTTCTCTAGGGTATAAGGTTAGCCATTGC-AGCTTCGACCTTTCCCTCCACGTCTCTAGGGTATA
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGA-CTTCAATCTTTCCCTCCACATCTCTAGGGTATA
* *
34522297 AGATTCGTCATTATGAGCTTCAATCTTTCCCTCTA
65 AGATTCGTCATTACGA-CTTCAATCTTTCCCTCCA
* * * * * *
34522332 TATCTCTAAGGTATAAGATTCGTTGTTACGGCTTCAATCTTT
1 CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATCTTT
34522374 TTCATCACGT
Statistics
Matches: 416, Mismatches: 106, Indels: 19
0.77 0.20 0.04
Matches are distributed among these distances:
96 2 0.00
97 75 0.18
98 289 0.69
99 50 0.12
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (98 bp):
CATCTTTAGGGTATAAGATTCGTCGTTGCGACTTCAATCTTTCCCTCCACATCTCTAGGGTATAA
GATTCGTCATTACGACTTCAATCTTTCCCTCCA
Found at i:34522245 original size:195 final size:197
Alignment explanation
Indices: 34521824--34522358 Score: 476
Period size: 195 Copynumber: 2.7 Consensus size: 197
34521814 GCCGTTGTGA
* * * * ** * * * * *
34521824 CTTCAATCTTTTCCTCCACATCTTTAGGGCATGAGATTCGTCGTTGCAGCCTT-AATCTTTCCTT
1 CTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTAGCCATTGCAG-CTTCAACCTTTCCCT
* * * * ** * *
34521888 TCACATCTCTAGGGCATGAGATTCATTGTT-GCGACTTCAATCTTTCCCTTCACATCTTTAGGGT
65 CCACATCTCTAAGGTATAAGATTCATCATTATCAACTTCAATCTTTCCCTTCACATCTTTAGGGT
* * *
34521952 ATAAGGTTCGTTGTTGCGACTTTAACCTTTCCCTCCACGTCTCTAGGGTATAAAATTTTTCGTTA
130 ATAAGGTTCGTTGTTGCGACTTTAACATTTCCCTCCACGTCTCTAGGGTATAAAATTTCTCATTA
34522017 CGG
195 CGG
* * * * * *
34522020 CTTCAATCTTTCCCTCCGCATCTTTAGGGTACAAGATTCGTCATTGC-GACTTCAATCTTTCCCT
1 CTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTAGCCATTGCAG-CTTCAACCTTTCCCT
* * * *
34522084 CTATATGTCTAAGGTATAAGATTCATCATTA-CAACTTCAATCTTTCCCTTCACAT-TTTTGGGT
65 CCACATCTCTAAGGTATAAGATTCATCATTATCAACTTCAATCTTTCCCTTCACATCTTTAGGGT
* * * **
34522147 ATAAGGTTC-TTCGTTGCGA-TTTCAACATTTTCCTCCACGTCTTTAGGGTTTAAGGTTTGCT-A
130 ATAAGGTTCGTT-GTTGCGACTTT-AACATTTCCCTCCACGTCTCTAGGGTATAAAATTT-CTCA
**
34522209 TTGTGG
192 TTACGG
* * * * *
34522215 CTTCAACCTTTCCCTTCACTTCTCTAGGGTATAAGGTTAGCCATTGCAGCTTCGACCTTTCCCTC
1 CTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTAGCCATTGCAGCTTCAACCTTTCCCTC
* * * * * * * *
34522280 CACGTCTCTAGGGTATAAGATTCGTCATTATGAGCTTCAATCTTTCCC-TCTATATCTCTAAGGT
66 CACATCTCTAAGGTATAAGATTCATCATTATCAACTTCAATCTTTCCCTTC-ACATCTTTAGGGT
*
34522344 ATAAGATTCGTTGTT
130 ATAAGGTTCGTTGTT
34522359 ACGGCTTCAA
Statistics
Matches: 276, Mismatches: 53, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
194 5 0.02
195 138 0.50
196 115 0.42
197 16 0.06
198 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (197 bp):
CTTCAACCTTTCCCTCCACATCTCTAGGGTACAAGATTAGCCATTGCAGCTTCAACCTTTCCCTC
CACATCTCTAAGGTATAAGATTCATCATTATCAACTTCAATCTTTCCCTTCACATCTTTAGGGTA
TAAGGTTCGTTGTTGCGACTTTAACATTTCCCTCCACGTCTCTAGGGTATAAAATTTCTCATTAC
GG
Found at i:34523360 original size:6 final size:6
Alignment explanation
Indices: 34523349--34523408 Score: 77
Period size: 6 Copynumber: 9.8 Consensus size: 6
34523339 CGACCACTCA
* *
34523349 TTTTTC TTTTTC TTTTTT TTCTTTC TTCTTTC TCTTT- TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TT-TTTC TT-TTTC TTTTTC TTTTTC TTTTTC
34523398 TTTTTC TTTTT
1 TTTTTC TTTTT
34523409 ATGGGTGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
5 4 0.08
6 33 0.69
7 11 0.23
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Done.