Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 135 of 163
Found at i:36672253 original size:6 final size:6
Alignment explanation
Indices: 36672228--36672271 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
36672218 ACAATTCATA
* * *
36672228 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCAACTT T
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TC-ACTT T
36672272 GATCACAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
6 28 0.85
7 5 0.15
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.48
Consensus pattern (6 bp):
TCACTT
Found at i:36682047 original size:556 final size:556
Alignment explanation
Indices: 36680995--36682107 Score: 2181
Period size: 556 Copynumber: 2.0 Consensus size: 556
36680985 TTTATAAAAT
36680995 AAAAAGTTCTTAAATACAGACTATTTTTAACATATCATCTTATAATATGCCATAATCCCACTGTA
1 AAAAAGTTCTTAAATACAGACTATTTTTAACATATCATCTTATAATATGCCATAATCCCACTGTA
* *
36681060 TGTAATATTGTAATAGCTCGGTTTCAATGATGTCGGGAGCAGTAGTTTGAGACCATACATTTCGA
66 TGTAATATTGTAATAGCTCGGTTTCAATGATGTCGGGAGCAGTAGTTTAAGACCACACATTTCGA
36681125 CAAATGTGTCAGTAAATATTATTATTTTAATATTTACGAGTGATGAGTAAGGTCATATTAATTTA
131 CAAATGTGTCAGTAAATATTATTATTTTAATATTTACGAGTGATGAGTAAGGTCATATTAATTTA
36681190 AATTATGAAATTTGGATGATAGATTTATTAAATTAGAAAAGAGGATTAAATTGTAAAAGGTACAA
196 AATTATGAAATTTGGATGATAGATTTATTAAATTAGAAAAGAGGATTAAATTGTAAAAGGTACAA
36681255 AGTTAAATTCTATTAGTGGAATATATCAATTAGTCAAGGGAGAAGAGTTAAAGGAACCTAAATGG
261 AGTTAAATTCTATTAGTGGAATATATCAATTAGTCAAGGGAGAAGAGTTAAAGGAACCTAAATGG
36681320 TAATTATACCCTATTTAGAATTTGAGTGCATGGGTTAGGTGACCAAATTTAGATATTTTCTTGTG
326 TAATTATACCCTATTTAGAATTTGAGTGCATGGGTTAGGTGACCAAATTTAGATATTTTCTTGTG
36681385 AAAATTAGTATTAAAATAAAAGTAATAGTAATAAAATAAAAAAAGAAGAGAAATAAAGAAATTTC
391 AAAATTAGTATTAAAATAAAAGTAATAGTAATAAAATAAAAAAAGAAGAGAAATAAAGAAATTTC
36681450 TTCATTTTCTTTCTTCTTCAATGTGAAGGCTCTCTTTTGAAACCCTAGGGTTTGGCCAAGCTATT
456 TTCATTTTCTTTCTTCTTCAATGTGAAGGCTCTCTTTTGAAACCCTAGGGTTTGGCCAAGCTATT
*
36681515 TTCTTTGATTGAACTAGATCTTGAGGTCCATTTTTA
521 TTCTTTGATTGAACTAGATCTTAAGGTCCATTTTTA
36681551 AAAAAGTTCTTAAATACAGACTATTTTTAACATATCATCTTATAATATGCCATAATCCCACTGTA
1 AAAAAGTTCTTAAATACAGACTATTTTTAACATATCATCTTATAATATGCCATAATCCCACTGTA
36681616 TGTAATATTGTAATAGCTCGGTTTCAATGATGTCGGGAGCAGTAGTTTAAGACCACACATTTCGA
66 TGTAATATTGTAATAGCTCGGTTTCAATGATGTCGGGAGCAGTAGTTTAAGACCACACATTTCGA
*
36681681 CAAATGTGTCAGTAAATATTATTATTTTAATATTTACGAGTGATGAGTAAGGTCATATTAATTTG
131 CAAATGTGTCAGTAAATATTATTATTTTAATATTTACGAGTGATGAGTAAGGTCATATTAATTTA
36681746 AATTATGAAATTTGGATGATAGATTTATTAAATTAGAAAAGAGGATTAAATTGTAAAAGGTACAA
196 AATTATGAAATTTGGATGATAGATTTATTAAATTAGAAAAGAGGATTAAATTGTAAAAGGTACAA
36681811 AGTTAAATTCTATTAGTGGAATATATCAATTAGTCAAGGGAGAAGAGTTAAAGGAACCTAAATGG
261 AGTTAAATTCTATTAGTGGAATATATCAATTAGTCAAGGGAGAAGAGTTAAAGGAACCTAAATGG
36681876 TAATTATACCCTATTTAGAATTTGAGTGCATGGGTTAGGTGACCAAATTTAGATATTTTCTTGTG
326 TAATTATACCCTATTTAGAATTTGAGTGCATGGGTTAGGTGACCAAATTTAGATATTTTCTTGTG
36681941 AAAATTAGTATTAAAATAAAAGTAATAGTAATAAAATAAAAAAAGAAGAGAAATAAAGAAATTTC
391 AAAATTAGTATTAAAATAAAAGTAATAGTAATAAAATAAAAAAAGAAGAGAAATAAAGAAATTTC
36682006 TTCATTTTCTTTCTTCTTCAATGTGAAGGCTCTCTTTTGAAACCCTAGGGTTTGGCCAAGCTATT
456 TTCATTTTCTTTCTTCTTCAATGTGAAGGCTCTCTTTTGAAACCCTAGGGTTTGGCCAAGCTATT
*
36682071 TTCTTTGATTGAAGTAGATCTTAAGGTCCATTTTTA
521 TTCTTTGATTGAACTAGATCTTAAGGTCCATTTTTA
36682107 A
1 A
36682108 TGATTTTTAT
Statistics
Matches: 552, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
556 552 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.35
Consensus pattern (556 bp):
AAAAAGTTCTTAAATACAGACTATTTTTAACATATCATCTTATAATATGCCATAATCCCACTGTA
TGTAATATTGTAATAGCTCGGTTTCAATGATGTCGGGAGCAGTAGTTTAAGACCACACATTTCGA
CAAATGTGTCAGTAAATATTATTATTTTAATATTTACGAGTGATGAGTAAGGTCATATTAATTTA
AATTATGAAATTTGGATGATAGATTTATTAAATTAGAAAAGAGGATTAAATTGTAAAAGGTACAA
AGTTAAATTCTATTAGTGGAATATATCAATTAGTCAAGGGAGAAGAGTTAAAGGAACCTAAATGG
TAATTATACCCTATTTAGAATTTGAGTGCATGGGTTAGGTGACCAAATTTAGATATTTTCTTGTG
AAAATTAGTATTAAAATAAAAGTAATAGTAATAAAATAAAAAAAGAAGAGAAATAAAGAAATTTC
TTCATTTTCTTTCTTCTTCAATGTGAAGGCTCTCTTTTGAAACCCTAGGGTTTGGCCAAGCTATT
TTCTTTGATTGAACTAGATCTTAAGGTCCATTTTTA
Found at i:36685685 original size:7 final size:7
Alignment explanation
Indices: 36685675--36685720 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
36685665 ATGATCAATT
36685675 GTCAACG
1 GTCAACG
*
36685682 GTCAATG
1 GTCAACG
36685689 GTCAAC-
1 GTCAACG
*
36685695 GTCAACT
1 GTCAACG
36685702 GTCAACG
1 GTCAACG
*
36685709 GTTAACG
1 GTCAACG
36685716 GTCAA
1 GTCAA
36685721 TGGGTTCGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
6 6 0.18
7 27 0.82
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (7 bp):
GTCAACG
Found at i:36685686 original size:14 final size:14
Alignment explanation
Indices: 36685669--36685710 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
36685659 CCATTAATGA
36685669 TCAATTGTCAACGG
1 TCAATTGTCAACGG
*
36685683 TCAATGGTCAAC-G
1 TCAATTGTCAACGG
*
36685696 TCAACTGTCAACGG
1 TCAATTGTCAACGG
36685710 T
1 T
36685711 TAACGGTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (14 bp):
TCAATTGTCAACGG
Found at i:36685700 original size:20 final size:21
Alignment explanation
Indices: 36685675--36685720 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
36685665 ATGATCAATT
*
36685675 GTCAACGGTCAATGGTCAAC-
1 GTCAACGGTCAACGGTCAACG
* *
36685695 GTCAACTGTCAACGGTTAACG
1 GTCAACGGTCAACGGTCAACG
36685716 GTCAA
1 GTCAA
36685721 TGGGTTCGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (21 bp):
GTCAACGGTCAACGGTCAACG
Found at i:36685706 original size:27 final size:27
Alignment explanation
Indices: 36685669--36685720 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
36685659 CCATTAATGA
* *
36685669 TCAATTGTCAACGGTCAATGGTCAACG
1 TCAACTGTCAACGGTCAACGGTCAACG
*
36685696 TCAACTGTCAACGGTTAACGGTCAA
1 TCAACTGTCAACGGTCAACGGTCAA
36685721 TGGGTTCGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (27 bp):
TCAACTGTCAACGGTCAACGGTCAACG
Found at i:36690470 original size:13 final size:12
Alignment explanation
Indices: 36690450--36690495 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
36690440 AAGTGAACGA
36690450 TCAAAGTCAAAG
1 TCAAAGTCAAAG
*
36690462 TCAACAGTCAAAA
1 TCAA-AGTCAAAG
*
36690475 TCAAAGGTTAAAG
1 TCAAA-GTCAAAG
36690488 TCAAAGTC
1 TCAAAGTC
36690496 GACTGTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 7 0.25
13 21 0.75
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (12 bp):
TCAAAGTCAAAG
Found at i:36690472 original size:7 final size:6
Alignment explanation
Indices: 36690450--36690495 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
36690440 AAGTGAACGA
* *
36690450 TCAAAG TCAAAG TCAACAG TCAAAA TCAAAGG TTAAAG TCAAAG TC
1 TCAAAG TCAAAG TCAA-AG TCAAAG TCAAA-G TCAAAG TCAAAG TC
36690496 GACTGTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 24 0.71
7 10 0.29
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (6 bp):
TCAAAG
Found at i:36690472 original size:19 final size:19
Alignment explanation
Indices: 36690450--36690495 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
36690440 AAGTGAACGA
36690450 TCAAAGTCAAA-GTCAACAG
1 TCAAAGTCAAAGGTCAA-AG
* *
36690469 TCAAAATCAAAGGTTAAAG
1 TCAAAGTCAAAGGTCAAAG
36690488 TCAAAGTC
1 TCAAAGTC
36690496 GACTGTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (19 bp):
TCAAAGTCAAAGGTCAAAG
Found at i:36690541 original size:27 final size:27
Alignment explanation
Indices: 36690511--36690579 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
36690501 TTAATGTCAA
* **
36690511 CGGGTCAATGGGTTGGGTCGGTCAACT
1 CGGGTCAATGGGTCGGGTCAATCAACT
* * *
36690538 CGGGTCTATAGGTCGGGTTAATCAACT
1 CGGGTCAATGGGTCGGGTCAATCAACT
*
36690565 CGGGTCAACGGGTCG
1 CGGGTCAATGGGTCG
36690580 AGTCGTTTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.17, C:0.20, G:0.38, T:0.25
Consensus pattern (27 bp):
CGGGTCAATGGGTCGGGTCAATCAACT
Found at i:36694463 original size:28 final size:29
Alignment explanation
Indices: 36694431--36694536 Score: 90
Period size: 30 Copynumber: 3.7 Consensus size: 29
36694421 GGTTAAAACT
36694431 TAATTTTTGAAAAGTTTAAGGGT-AAATA
1 TAATTTTTGAAAAGTTTAAGGGTCAAATA
* * * *
36694459 TAATTTTTGGAAA-TTTTAGGGTCAATTC
1 TAATTTTTGAAAAGTTTAAGGGTCAAATA
** * *
36694487 TAAATTTTTGAAAAGTTCGAGGTTCAAAACA
1 T-AATTTTTGAAAAGTTTAAGGGTC-AAATA
* *
36694518 TAATTTTTGGATAGTTTAA
1 TAATTTTTGAAAAGTTTAA
36694537 AGGTTAAAAC
Statistics
Matches: 59, Mismatches: 15, Indels: 6
0.74 0.19 0.08
Matches are distributed among these distances:
27 8 0.14
28 16 0.27
29 11 0.19
30 21 0.36
31 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.42
Consensus pattern (29 bp):
TAATTTTTGAAAAGTTTAAGGGTCAAATA
Found at i:36694466 original size:57 final size:58
Alignment explanation
Indices: 36694405--36694553 Score: 147
Period size: 57 Copynumber: 2.6 Consensus size: 58
36694395 TTTTGAAAAG
** * *
36694405 TTTTTGGAAGTTTGGGGGTTAAAACTTAATTTTTGAAAAGTTTAAGGGT-AAATATAA
1 TTTTTGGAAGTTTAAGGGTTAAAACTTAATTTTTGAAAAGTTCAAGGGTAAAACATAA
* * * ** * * *
36694462 TTTTTGGAAATTTTAGGGTCAATTCTAAATTTTTGAAAAGTTCGAGGTTCAAAACATAA
1 TTTTTGGAAGTTTAAGGGTTAAAACTTAATTTTTGAAAAGTTCAAGGGT-AAAACATAA
* *
36694521 TTTTTGGATAGTTTAAAGGTTAAAACGTAATTT
1 TTTTTGGA-AGTTTAAGGGTTAAAACTTAATTT
36694554 ATAAATAAAA
Statistics
Matches: 70, Mismatches: 19, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
57 39 0.56
59 15 0.21
60 16 0.23
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.41
Consensus pattern (58 bp):
TTTTTGGAAGTTTAAGGGTTAAAACTTAATTTTTGAAAAGTTCAAGGGTAAAACATAA
Found at i:36694996 original size:15 final size:14
Alignment explanation
Indices: 36694976--36695026 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 14
36694966 GGTCGATCGA
36694976 CCGTCGTCGCCTCTT
1 CCGTCGTCGCC-CTT
*
36694991 CCGTCGATCGCCGTT
1 CCGTCG-TCGCCCTT
*
36695006 -CGTCGTCG-CCAT
1 CCGTCGTCGCCCTT
36695018 CCGTCGTCG
1 CCGTCGTCG
36695027 TGTCTGACGT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 5 0.16
15 8 0.26
16 5 0.16
ACGTcount: A:0.04, C:0.43, G:0.25, T:0.27
Consensus pattern (14 bp):
CCGTCGTCGCCCTT
Found at i:36696450 original size:123 final size:123
Alignment explanation
Indices: 36696247--36696581 Score: 440
Period size: 123 Copynumber: 2.7 Consensus size: 123
36696237 TCCTCTTTTT
* * * * * *
36696247 TGTATCTCATCAAGAAGATGGGGTTTGAAGTTTCACTCTCATTGAGCTCCACTTTA-TTATTCAG
1 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTTTTCA-
*
36696311 GTCTACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTATTTTGATCCACTTCTC
65 GTCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTATTTTGATCCACTTCTC
* * *
36696370 TGTATCTCATTAGGAAGATGGGGTTTAAAGTTTCACTCACATTGAGCTTTGCTTCATTTTTTCAG
1 TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTTTTCAG
* * * * *
36696435 TCCACTTCTCTGTATCTCATTAGGAAGGTGACCGTTTTATTATTTTGATCCACTTCTC
66 TCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTATTTTGATCCACTTCTC
* * * * *
36696493 TATATCTCATCAGAAAGATGTGAGTTTGAAGTTTTATTCACATTGAGCTTCGCTTCATTGTTTT-
1 TGTATCTCATCAGGAAGATG-GGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATT-TTTTC
*
36696557 GGTCCACTTCTCTGTATCTCATCAG
64 AGTCCACTTCTCTGTATCTCATCAG
36696582 GAATATGGGG
Statistics
Matches: 184, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
123 118 0.64
124 62 0.34
125 4 0.02
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (123 bp):
TGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTCACATTGAGCTTCGCTTCATTTTTTCAG
TCCACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTATTTTGATCCACTTCTC
Found at i:36696615 original size:76 final size:76
Alignment explanation
Indices: 36696477--36696664 Score: 250
Period size: 76 Copynumber: 2.5 Consensus size: 76
36696467 CGTTTTATTA
* * * * * *
36696477 TTTTGATCCACTTCTCTATATCTCATCAGAAAGATGTGAGTTTGAAGTTTTATTCACATTGAGCT
1 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCT
* *
36696542 TCGCTTCATTG
66 CCACTTCATTG
* * **
36696553 TTTTGGTCCACTTCTCTGTATCTCATCAGGAATATGGGGGTTTGAAGTTTCACTCATGTTGAGCT
1 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCT
36696618 CCACTTCATTG
66 CCACTTCATTG
* *
36696629 TTTTGGACCACTTCTCTGTATCTTATCAGGAAGATG
1 TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATG
36696665 ACTGCTTCAA
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 97 1.00
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (76 bp):
TTTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGGGAGTTTGAAGTTTCACTCACATTGAGCT
CCACTTCATTG
Found at i:36696690 original size:124 final size:124
Alignment explanation
Indices: 36696552--36696790 Score: 325
Period size: 124 Copynumber: 1.9 Consensus size: 124
36696542 TCGCTTCATT
* * * * ** * *
36696552 GTTTTGGTCCACTTCTCTGTATCTCATCAGGAATATGGGGGTTTGAAGTTTCACTCATGTTGAGC
1 GTTTTGATCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTTAAAGTTTCACTCACATTAAGA
* *
36696617 TCCACTTCATTGTTTTGGACCACTTCTCTGTATCTTATCAGGAAGATGACTGCTTCAAA
66 TCCACTTCATTATTTTGGACCACTTCTCTGTATCTTATCAAGAAGATGACTGCTTCAAA
* *
36696676 GTTTTGATCCACTTCTCTGTATCTCGTCAAGAAGATGGGGTTTTAAAGTTTCACTCACATTAAGA
1 GTTTTGATCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTTAAAGTTTCACTCACATTAAGA
* * * * *
36696741 TTCGCTTCATTATTTTGGTCCACTTTTCTGTATCTTATTAAGAAGATGAC
66 TCCACTTCATTATTTTGGACCACTTCTCTGTATCTTATCAAGAAGATGAC
36696791 CTTTGGAAGT
Statistics
Matches: 98, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
124 98 1.00
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (124 bp):
GTTTTGATCCACTTCTCTGTATCTCATCAAGAAGATGGGGGTTTAAAGTTTCACTCACATTAAGA
TCCACTTCATTATTTTGGACCACTTCTCTGTATCTTATCAAGAAGATGACTGCTTCAAA
Found at i:36696802 original size:200 final size:199
Alignment explanation
Indices: 36696344--36696807 Score: 549
Period size: 200 Copynumber: 2.3 Consensus size: 199
36696334 GAAAGATGAC
* *
36696344 CGCTTCATTATTTTGATCCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTAAAGTTTCACTCA
1 CGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTCACTCA
*** * * * * *
36696409 CATTGAGCTTTGCTTCATTTTTTCAGTCCACTTCTCTGTATCTCATTAGGAAGGTGACCGTTTTA
66 CATTGAGCTCCACTTCATTTTTTCAGACCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCA
* * * * *
36696474 TTATTTTGATCCACTTCTCTATATCTCATCAGAAAGATGTGAGTTTGAAGTTTTATTCACATTGA
131 TAATTTTGATCCACTTCTCTATATCTCATCAGAAAGATGTGAGTTTAAAGTTTCACTCACATTAA
*
36696539 GCTT
196 GATT
* * *
36696543 CGCTTCATTGTTTTGGTCCACTTCTCTGTATCTCATCAGGAATATGGGGGTTTGAAGTTTCACTC
1 CGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATTAGGAAGAT-GGGGTTTGAAGTTTCACTC
** * * *
36696608 ATGTTGAGCTCCACTTCATTGTTTT-GGACCACTTCTCTGTATCTTATCAGGAAGATGACTGCTT
65 ACATTGAGCTCCACTTCATT-TTTTCAGACCACTTCTCTGTATCTCATCAGGAAGATGACCGCTT
* * *
36696672 CA-AAGTTTTGATCCACTTCTCTGTATCTCGTCA-AGAAGATG-GGGTTTTAAAGTTTCACTCAC
129 CATAA-TTTTGATCCACTTCTCTATATCTCATCAGA-AAGATGTGAG-TTTAAAGTTTCACTCAC
36696734 ATTAAGATT
191 ATTAAGATT
* * * ***
36696743 CGCTTCATTATTTTGGTCCACTTTTCTGTATCTTATTAAGAAGATGACCTTTGGAAGTTTCACTC
1 CGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGGGGTTT-GAAGTTTCACTC
36696808 TTCCCCATGC
Statistics
Matches: 223, Mismatches: 36, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
199 49 0.22
200 170 0.76
201 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.17, T:0.41
Consensus pattern (199 bp):
CGCTTCATTATTTTGGTCCACTTCTCTGTATCTCATTAGGAAGATGGGGTTTGAAGTTTCACTCA
CATTGAGCTCCACTTCATTTTTTCAGACCACTTCTCTGTATCTCATCAGGAAGATGACCGCTTCA
TAATTTTGATCCACTTCTCTATATCTCATCAGAAAGATGTGAGTTTAAAGTTTCACTCACATTAA
GATT
Found at i:36699974 original size:29 final size:28
Alignment explanation
Indices: 36699941--36700220 Score: 85
Period size: 29 Copynumber: 9.5 Consensus size: 28
36699931 AAATCGAGGT
*
36699941 TAAAAATGGAATTTTAGAAAGTTTTGGGG
1 TAAAAATGGAATTTT-GAAAGTTTAGGGG
** * * *
36699970 T-AAAATGGTAATTTTTTATGATATCGGGG
1 TAAAAATGG-AATTTTGAAAG-TTTAGGGG
36699999 TTAAAAATGGAATTTTGGAAAGTTTAGGGG
1 -TAAAAATGGAATTTT-GAAAGTTTAGGGG
* ** *
36700029 T-AATATGGTAATTTTTCGTGAAA-TCGA-GGT
1 TAAAAATGG-AA--TTT--TGAAAGTTTAGGGG
* *
36700059 TAAAAATGGAGTTTTGGAAAGTTCAGGGG
1 TAAAAATGGAATTTT-GAAAGTTTAGGGG
* *
36700088 T-AAAATGGTAATTTTTGATGAA--ATCGGGG
1 TAAAAATGG-AA-TTTTGA--AAGTTTAGGGG
* * *
36700117 TTGAAAATGGAGTTTTAGAAAGTTTAAGGG
1 -TAAAAATGGAATTTT-GAAAGTTTAGGGG
* * *
36700147 T-AAAATGGTAATTTTTGATGAA-ATCAGGGT
1 TAAAAATGG-AA-TTTTGA--AAGTTTAGGGG
* *
36700177 TAAAAATGGAGTTTTGGAAAGTTTAGGAG
1 TAAAAATGGAATTTT-GAAAGTTTAGGGG
36700206 T-AAAATGGTAATTTT
1 TAAAAATGG-AATTTT
36700221 TGGACCATCT
Statistics
Matches: 182, Mismatches: 38, Indels: 62
0.65 0.13 0.22
Matches are distributed among these distances:
26 1 0.01
27 4 0.02
28 45 0.25
29 48 0.26
30 41 0.23
31 38 0.21
32 4 0.02
33 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.35
Consensus pattern (28 bp):
TAAAAATGGAATTTTGAAAGTTTAGGGG
Found at i:36700013 original size:30 final size:31
Alignment explanation
Indices: 36699911--36700014 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 31
36699901 GTTTGGGGGT
* * *
36699911 AAAATGGTATTTTTTTGATGAAATCGAGGTTA
1 AAAATGGTAATTTTTT-ATGATATCGGGGTTA
** * * *
36699943 AAAATGG-AATTTTAGA-AAGTTTTGGGG-T-
1 AAAATGGTAATTTTTTATGA-TATCGGGGTTA
36699971 AAAATGGTAATTTTTTATGATATCGGGGTTA
1 AAAATGGTAATTTTTTATGATATCGGGGTTA
36700002 AAAATGG-AATTTT
1 AAAATGGTAATTTT
36700015 GGAAAGTTTA
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
28 7 0.13
29 15 0.28
30 13 0.24
31 12 0.22
32 7 0.13
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.39
Consensus pattern (31 bp):
AAAATGGTAATTTTTTATGATATCGGGGTTA
Found at i:36700014 original size:59 final size:59
Alignment explanation
Indices: 36699846--36700222 Score: 522
Period size: 59 Copynumber: 6.4 Consensus size: 59
36699836 TAGACGTGCG
* * * * * *
36699846 AGGGGCAAAATGGTAATTTTTGGTGAAATCAGGATTAAATATGGATTTTTGGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
* * * * *
36699905 GGGGGTAAAATGGTATTTTTTTGATGAAATCGAGGTTAAAAATGGAATTTTAGAAAGTTT
1 AGGGGTAAAATGGTA-ATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
* * * *
36699965 TGGGGTAAAATGGTAATTTTTTATGATATCGGGGTTAAAAATGGAATTTTGGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
* * *
36700024 AGGGGTAATATGGTAATTTTTCG-TGAAATCGAGGTTAAAAATGGAGTTTTGGAAAGTTC
1 AGGGGTAAAATGGTAATTTTT-GATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
* *
36700083 AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTGAAAATGGAGTTTTAGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
* *
36700142 AAGGGTAAAATGGTAATTTTTGATGAAATCAGGGTTAAAAATGGAGTTTTGGAAAGTTT
1 AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
*
36700201 AGGAGTAAAATGGTAATTTTTG
1 AGGGGTAAAATGGTAATTTTTG
36700223 GACCATCTAG
Statistics
Matches: 281, Mismatches: 34, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
58 1 0.00
59 230 0.82
60 50 0.18
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (59 bp):
AGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTTAAAAATGGAGTTTTGGAAAGTTT
Found at i:36700689 original size:162 final size:162
Alignment explanation
Indices: 36700294--36700781 Score: 709
Period size: 162 Copynumber: 3.0 Consensus size: 162
36700284 AGCATCCAGA
** * * **
36700294 AGTCAAAGGACTAATTTGTAAATCTTGAAAA-ATTCTT-GGGCCAATTTTGTAATTAAATAAAAG
1 AGTCAAAGGACTAATTTAAAAATC-TCAAAAGATT-TTAGGGTCAATTTTGTAATTAAGCAAAAG
*
36700357 TTGATTTAAGGATTAAATTAAAACAAATTAAAAAAGGCAGGGACTAAATACATAAATAAGCCAAA
64 TTGATTTGAGGATTAAATTAAAACAAATTAAAAAAGGCAGGGACTAAATACATAAATAAGCCAAA
36700422 AAGTGACACGTGGCAGCCTCTGGTG-AGTCAAAC
129 AAGTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
* *
36700455 AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTCAGGGTTAATTTTGTAATTAAGCAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTTAGGGTCAATTTTGTAATTAAGCAAAAGTT
* * * * *
36700520 AATTTGAGGATTAAATTAAAACAAATTAAAAATGGTAGGGACTAGATACATAAATAAGCTAAAAA
66 GATTTGAGGATTAAATTAAAACAAATTAAAAAAGGCAGGGACTAAATACATAAATAAGCCAAAAA
*
36700585 GTGACACGTGGCAGCCTTTGGTGCAGTCAAAC
131 GTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
*
36700617 GGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTTAGGGTCAATTTTGTAATTAAGCAAAAGTT
1 AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTTAGGGTCAATTTTGTAATTAAGCAAAAGTT
**
36700682 GATTTGAGGATTAAATTAAAACAAATTAAACACAA--CAGGGACTAAATGTA-AAATAAGCCGAA
66 GATTTGAGGATTAAATTAAAACAAATTAAA-A-AAGGCAGGGACTAAATACATAAATAAGCC-AA
* *
36700744 AAAATGACACGTGGCAGCCTCTGGTGCAGTCACAC
128 AAAGTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
36700779 AGT
1 AGT
36700782 TGGGGGATTA
Statistics
Matches: 292, Mismatches: 29, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
160 6 0.02
161 138 0.47
162 146 0.50
163 1 0.00
164 1 0.00
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.26
Consensus pattern (162 bp):
AGTCAAAGGACTAATTTAAAAATCTCAAAAGATTTTAGGGTCAATTTTGTAATTAAGCAAAAGTT
GATTTGAGGATTAAATTAAAACAAATTAAAAAAGGCAGGGACTAAATACATAAATAAGCCAAAAA
GTGACACGTGGCAGCCTCTGGTGCAGTCAAAC
Found at i:36701061 original size:21 final size:21
Alignment explanation
Indices: 36701020--36701063 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36701010 TCATCCCTCC
* *
36701020 CCTCTCTCATTTTCTCTCTGT
1 CCTCTCTCATCTTCTCCCTGT
36701041 CCTCTCTCATCCTTC-CCCTGT
1 CCTCTCTCAT-CTTCTCCCTGT
36701062 CC
1 CC
36701064 GGCCACATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.05, C:0.48, G:0.05, T:0.43
Consensus pattern (21 bp):
CCTCTCTCATCTTCTCCCTGT
Found at i:36701515 original size:13 final size:13
Alignment explanation
Indices: 36701493--36701540 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
36701483 ATTAATAATG
*
36701493 ATATTAATTATAA
1 ATATTTATTATAA
*
36701506 ATATTTATTATTA
1 ATATTTATTATAA
*
36701519 TTATTTATTATAA
1 ATATTTATTATAA
*
36701532 TTA-TTATTA
1 ATATTTATTA
36701541 ATATTATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
12 6 0.19
13 25 0.81
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:36701518 original size:3 final size:3
Alignment explanation
Indices: 36701510--36701549 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
36701500 TTATAAATAT
* *
36701510 TTA TTA TTA TTA TTTA TTA TAA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
36701550 ATAATATTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:36701548 original size:9 final size:9
Alignment explanation
Indices: 36701499--36701557 Score: 52
Period size: 9 Copynumber: 6.7 Consensus size: 9
36701489 AATGATATTA
*
36701499 ATTATAAAT
1 ATTATTAAT
*
36701508 ATTTATTATT
1 A-TTATTAAT
36701518 ATTATT--T
1 ATTATTAAT
36701525 ATTA-TAATT
1 ATTATTAA-T
36701534 ATTATTAAT
1 ATTATTAAT
36701543 ATTATTAAT
1 ATTATTAAT
*
36701552 AATATT
1 ATTATT
36701558 CAAAGAGTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
6 1 0.02
7 5 0.12
9 26 0.62
10 10 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTATTAAT
Found at i:36702333 original size:6 final size:6
Alignment explanation
Indices: 36702324--36702423 Score: 86
Period size: 6 Copynumber: 17.0 Consensus size: 6
36702314 TTAATATTAT
*
36702324 TTTAAA TTT-AA -TTAAA TTTAAA TTTAAA -ATAAA TTTAAA TTAGTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT--TAAA
** *
36702371 TTTAAA TTTAAGA --TAAA TTTAAA AATAAA TTTAAA ATT-AA TTTAAA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
36702417 CTTTAAA
1 -TTTAAA
36702424 AAATCAAAAG
Statistics
Matches: 76, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
4 3 0.04
5 15 0.20
6 45 0.59
7 7 0.09
8 6 0.08
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (6 bp):
TTTAAA
Found at i:36702333 original size:17 final size:17
Alignment explanation
Indices: 36702308--36702393 Score: 90
Period size: 17 Copynumber: 5.3 Consensus size: 17
36702298 ACTTTATTTA
* * *
36702308 TTAAGTTTAATATTATT
1 TTAAATTTAATATAAAT
36702325 TTAAATTTAAT-TAAAT
1 TTAAATTTAATATAAAT
*
36702341 TTAAATTTAAAATAAAT
1 TTAAATTTAATATAAAT
*
36702358 TTAAA-TT-A-GTAAAT
1 TTAAATTTAATATAAAT
*
36702372 TTAAATTTAAGATAAAT
1 TTAAATTTAATATAAAT
36702389 TTAAA
1 TTAAA
36702394 AATAAATTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
14 10 0.17
15 3 0.05
16 16 0.27
17 30 0.51
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TTAAATTTAATATAAAT
Found at i:36702347 original size:11 final size:11
Alignment explanation
Indices: 36702325--36702416 Score: 66
Period size: 11 Copynumber: 8.0 Consensus size: 11
36702315 TAATATTATT
36702325 TTAAATTT-AA
1 TTAAATTTAAA
36702335 TTAAATTTAAA
1 TTAAATTTAAA
*
36702346 TTTAAA-ATAAA
1 -TTAAATTTAAA
36702357 TTTAAATTAGTAAA
1 -TTAAATT--TAAA
36702371 TTTAAATTTAAGA
1 -TTAAATTTAA-A
36702384 -TAAATTTAAAA
1 TTAAATTT-AAA
*
36702395 ATAAATTTAAAA
1 TTAAATTT-AAA
36702407 TT-AATTTAAA
1 TTAAATTTAAA
36702417 CTTTAAAAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 16
0.79 0.03 0.18
Matches are distributed among these distances:
10 11 0.15
11 25 0.35
12 22 0.31
13 1 0.01
14 12 0.17
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:36702374 original size:31 final size:29
Alignment explanation
Indices: 36702336--36702425 Score: 108
Period size: 31 Copynumber: 3.0 Consensus size: 29
36702326 TAAATTTAAT
*
36702336 TAAATTTAAATTTAAAATAAATTTAAATTAG
1 TAAATTTAAATTTAAAATAAATTTAAA--AA
*
36702367 TAAATTTAAATTTAAGATAAATTTAAAAA
1 TAAATTTAAATTTAAAATAAATTTAAAAA
* **
36702396 TAAATTTAAAATTAATTTAAACTTTAAAAA
1 TAAATTTAAATTTAAAATAAA-TTTAAAAA
36702426 ATCAAAAGCC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
29 19 0.36
30 8 0.15
31 26 0.49
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (29 bp):
TAAATTTAAATTTAAAATAAATTTAAAAA
Found at i:36712725 original size:89 final size:90
Alignment explanation
Indices: 36712630--36712821 Score: 246
Period size: 89 Copynumber: 2.1 Consensus size: 90
36712620 AAAAATGAAA
* * * *
36712630 TTTTGGAAAGTTTAGGGGCCATATTCA-AATTTTTGGAAAATTTG-GGGATCAAGTCCAAATTTT
1 TTTTGGAAAGTTTAGGGGCAAAAAT-ATAATTTTTGGAAAATTTGAGGG-TCAAATCCAAATTTT
* * *
36712693 TAGAAAGTT-TAGGGTTAAAACTTAAT
64 TAGAAAGTTCGAGGGTCAAAACATAAT
* *
36712719 TTTTGGAAAGTTTAGGGGTAAAAATATAATTTTTGGAAATTTTGAGGGTCAAATCCAAATTTTTA
1 TTTTGGAAAGTTTAGGGGCAAAAATATAATTTTTGGAAAATTTGAGGGTCAAATCCAAATTTTTA
*
36712784 GAAAGTTCGAGGGTCAAACCATAAT
66 GAAAGTTCGAGGGTCAAAACATAAT
*
36712809 TTTTGGATAGTTT
1 TTTTGGAAAGTTT
36712822 GAAGGTTAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
88 1 0.01
89 60 0.67
90 28 0.31
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (90 bp):
TTTTGGAAAGTTTAGGGGCAAAAATATAATTTTTGGAAAATTTGAGGGTCAAATCCAAATTTTTA
GAAAGTTCGAGGGTCAAAACATAAT
Found at i:36712796 original size:30 final size:29
Alignment explanation
Indices: 36712630--36712820 Score: 120
Period size: 30 Copynumber: 6.4 Consensus size: 29
36712620 AAAAATGAAA
* * * *
36712630 TTTTGGAAAGTTTAGGGGCCATATTCAAAT
1 TTTTGGAAAGTTGA-GGGTCAAATCCAAAT
* *
36712660 TTTTGGAAAATTTG-GGGATCAAGTCCAAAT
1 TTTTGG-AAAGTTGAGGG-TCAAATCCAAAT
* * * * **
36712690 TTTTAGAAAGTTTAGGGTTAAAACTTAAT
1 TTTTGGAAAGTTGAGGGTCAAATCCAAAT
* *
36712719 TTTTGGAAAGTTTAGGGGTAAAAAT--ATAAT
1 TTTTGGAAAGTTGA-GGGT-CAAATCCA-AAT
*
36712749 TTTTGGAAATTTTGAGGGTCAAATCCAAAT
1 TTTTGGAAA-GTTGAGGGTCAAATCCAAAT
*
36712779 TTTTAGAAAGTTCGAGGGTCAAA-CCATAAT
1 TTTTGGAAAGTT-GAGGGTCAAATCCA-AAT
*
36712809 TTTTGGATAGTT
1 TTTTGGAAAGTT
36712821 TGAAGGTTAA
Statistics
Matches: 125, Mismatches: 25, Indels: 22
0.73 0.15 0.13
Matches are distributed among these distances:
29 37 0.30
30 76 0.61
31 12 0.10
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.37
Consensus pattern (29 bp):
TTTTGGAAAGTTGAGGGTCAAATCCAAAT
Found at i:36712837 original size:30 final size:30
Alignment explanation
Indices: 36712657--36712840 Score: 153
Period size: 30 Copynumber: 6.2 Consensus size: 30
36712647 GCCATATTCA
* **
36712657 AATTTTTGGAAAATTTG-GGGATCAAGTCCA-
1 AATTTTTGGAAAGTTTGAGGG-TCAA-AACAT
* * *
36712687 AATTTTTAGAAAGTTT-AGGGTTAAAACTT
1 AATTTTTGGAAAGTTTGAGGGTCAAAACAT
* *
36712716 AATTTTTGGAAAGTTT-AGGGGTAAAAATAT
1 AATTTTTGGAAAGTTTGA-GGGTCAAAACAT
* *
36712746 AATTTTTGGAAATTTTGAGGGTCAAATCCA-
1 AATTTTTGGAAAGTTTGAGGGTCAAA-ACAT
* * *
36712776 AATTTTTAGAAAGTTCGAGGGTCAAACCAT
1 AATTTTTGGAAAGTTTGAGGGTCAAAACAT
* * *
36712806 AATTTTTGGATAGTTTGAAGGTTAAAACAT
1 AATTTTTGGAAAGTTTGAGGGTCAAAACAT
36712836 AATTT
1 AATTT
36712841 ATAAATAAAA
Statistics
Matches: 125, Mismatches: 23, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.18
30 100 0.80
31 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (30 bp):
AATTTTTGGAAAGTTTGAGGGTCAAAACAT
Found at i:36717035 original size:12 final size:12
Alignment explanation
Indices: 36717016--36717046 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
36717006 AATGTATACA
36717016 AAAAATAGAAAT
1 AAAAATAGAAAT
*
36717028 AGAAATAGAAAT
1 AAAAATAGAAAT
36717040 AAAAATA
1 AAAAATA
36717047 TATAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.16
Consensus pattern (12 bp):
AAAAATAGAAAT
Found at i:36717534 original size:31 final size:29
Alignment explanation
Indices: 36717486--36717563 Score: 79
Period size: 27 Copynumber: 2.7 Consensus size: 29
36717476 ATTATAAAAT
* *
36717486 TATACATAAACTATGATTTAATGTGCAATTG
1 TATACATAAATTTTGATTT--TGTGCAATTG
* *
36717517 TATACATAAATTTTGA--TTGTGTAATTT
1 TATACATAAATTTTGATTTTGTGCAATTG
36717544 TATACATGAAATTTTGATTT
1 TATACAT-AAATTTTGATTT
36717564 GATCCAATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
27 15 0.38
28 9 0.22
29 1 0.03
30 1 0.03
31 14 0.35
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.46
Consensus pattern (29 bp):
TATACATAAATTTTGATTTTGTGCAATTG
Found at i:36717537 original size:27 final size:28
Alignment explanation
Indices: 36717507--36717562 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
36717497 TATGATTTAA
36717507 TGTGCAATTGTATACAT-AAATTTTGAT
1 TGTGCAATTGTATACATGAAATTTTGAT
* *
36717534 TGTGTAATTTTATACATGAAATTTTGAT
1 TGTGCAATTGTATACATGAAATTTTGAT
36717562 T
1 T
36717563 TGATCCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.48
Consensus pattern (28 bp):
TGTGCAATTGTATACATGAAATTTTGAT
Found at i:36727416 original size:73 final size:73
Alignment explanation
Indices: 36727264--36727447 Score: 192
Period size: 73 Copynumber: 2.5 Consensus size: 73
36727254 CATATAAACA
* *
36727264 AGAAACAGTGAGTTACACGGTCTGGGCACACGGGCATGTGCCAGACCGTTTGAGCATTCTGACTG
1 AGAAACAGTGAGTTACACGGTCTGGGCACACGGGCGTGTGCCAGACCGTGTGAGCATTCTGACTG
* **
36727329 GTGAGCTC
66 GGGAAATC
* * * * **
36727337 AGAAACAGTGAGTTACACGGTCTGGGCACACGAGCGTGTGCTAGATCGTGTG-GCCGTTCTGTTT
1 AGAAACAGTGAGTTACACGGTCTGGGCACACGGGCGTGTGCCAGACCGTGTGAG-CATTCTG-AC
36727401 TGGGGAAATC
64 TGGGGAAATC
* * * * *
36727411 A-AAACAATGAATTACATGGGCTGGACACACGGGCGTG
1 AGAAACAGTGAGTTACACGGTCTGGGCACACGGGCGTG
36727448 GGTACTACCG
Statistics
Matches: 92, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
72 1 0.01
73 83 0.90
74 8 0.09
ACGTcount: A:0.25, C:0.21, G:0.32, T:0.22
Consensus pattern (73 bp):
AGAAACAGTGAGTTACACGGTCTGGGCACACGGGCGTGTGCCAGACCGTGTGAGCATTCTGACTG
GGGAAATC
Found at i:36727654 original size:39 final size:39
Alignment explanation
Indices: 36727600--36727689 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
36727590 ATTGAACTGT
*
36727600 GATACTATACTGAACTAGCAA-TTACACTGTAAACACTAC
1 GATACTATACTGAACTAG-AAGTGACACTGTAAACACTAC
* *
36727639 GATACTATATTGAACTAGAAGTGACATTGTAAACACTAC
1 GATACTATACTGAACTAGAAGTGACACTGTAAACACTAC
36727678 GATACTATACTG
1 GATACTATACTG
36727690 TAAACACTGC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
38 2 0.04
39 44 0.96
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (39 bp):
GATACTATACTGAACTAGAAGTGACACTGTAAACACTAC
Found at i:36727691 original size:22 final size:22
Alignment explanation
Indices: 36727666--36727711 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
36727656 GAAGTGACAT
36727666 TGTAAACACTACGATACTATAC
1 TGTAAACACTACGATACTATAC
*
36727688 TGTAAACACTGCGATACTATAC
1 TGTAAACACTACGATACTATAC
36727710 TG
1 TG
36727712 AACTGGCAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (22 bp):
TGTAAACACTACGATACTATAC
Found at i:36727697 original size:61 final size:61
Alignment explanation
Indices: 36727625--36727750 Score: 180
Period size: 61 Copynumber: 2.1 Consensus size: 61
36727615 TAGCAATTAC
* * *
36727625 ACTGTAAACACTACGATACTATATTGAACTAGAAGTGACATTGTAAACACTACGATACTAT
1 ACTGTAAACACTACGATACTATACTGAACTAGAAGTGACACTGTAAACACTACAATACTAT
* * * * *
36727686 ACTGTAAACACTGCGATACTATACTGAACTGGCAGTGACACTGTAAACACTGCAATATTAT
1 ACTGTAAACACTACGATACTATACTGAACTAGAAGTGACACTGTAAACACTACAATACTAT
36727747 ACTG
1 ACTG
36727751 AACTGGCGAT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (61 bp):
ACTGTAAACACTACGATACTATACTGAACTAGAAGTGACACTGTAAACACTACAATACTAT
Found at i:36727748 original size:39 final size:39
Alignment explanation
Indices: 36727686--36727819 Score: 207
Period size: 39 Copynumber: 3.4 Consensus size: 39
36727676 ACGATACTAT
36727686 ACTGTAAACACTGCGATACTATACTGAACTGGCAGTGAC
1 ACTGTAAACACTGCGATACTATACTGAACTGGCAGTGAC
* *
36727725 ACTGTAAACACTGCAATATTATACTGAACTGGC-GATGAC
1 ACTGTAAACACTGCGATACTATACTGAACTGGCAG-TGAC
* *
36727764 ACTGTAAACACTGCGATACTATATTGAATTGGCAGTGAC
1 ACTGTAAACACTGCGATACTATACTGAACTGGCAGTGAC
*
36727803 ATTGTAAACACTGCGAT
1 ACTGTAAACACTGCGAT
36727820 GCTTGCCTGA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 84 0.98
40 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (39 bp):
ACTGTAAACACTGCGATACTATACTGAACTGGCAGTGAC
Found at i:36727773 original size:100 final size:100
Alignment explanation
Indices: 36727595--36727786 Score: 260
Period size: 100 Copynumber: 1.9 Consensus size: 100
36727585 GGAACATTGA
* * * *
36727595 ACTGTGATACTATACTGAACTAGCAATTACACTGTAAACACTACGATACTATATTGAACTAGAAG
1 ACTGCGATACTATACTGAACTAGCAATGACACTGTAAACACTACAATACTATACTGAACTAGAAG
*
36727660 TGACATTGTAAACACTACGATACTATACTGTAAAC
66 TGACACTGTAAACACTACGATACTATACTGTAAAC
* * * * **
36727695 ACTGCGATACTATACTGAACTGGCAGTGACACTGTAAACACTGCAATATTATACTGAACT-GGCG
1 ACTGCGATACTATACTGAACTAGCAATGACACTGTAAACACTACAATACTATACTGAACTAGAAG
*
36727759 ATGACACTGTAAACACTGCGATACTATA
66 -TGACACTGTAAACACTACGATACTATA
36727787 TTGAATTGGC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 2 0.03
100 77 0.97
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (100 bp):
ACTGCGATACTATACTGAACTAGCAATGACACTGTAAACACTACAATACTATACTGAACTAGAAG
TGACACTGTAAACACTACGATACTATACTGTAAAC
Found at i:36728610 original size:29 final size:30
Alignment explanation
Indices: 36728573--36728653 Score: 74
Period size: 29 Copynumber: 2.7 Consensus size: 30
36728563 GAATTTGATC
*
36728573 AAATCAAAATTTTATGTATAAAATGGCACA-
1 AAAT-AAAAATTTATGTATAAAATGGCACAT
** * *
36728603 AAATAAAAATCCATGTATAAAATTGCATATT
1 AAATAAAAATTTATGTATAAAATGGCACA-T
* *
36728634 AAATCAAAGTTTATGTATAA
1 AAATAAAAATTTATGTATAA
36728654 TTTTGAGATT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 20 0.50
30 4 0.10
31 16 0.40
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (30 bp):
AAATAAAAATTTATGTATAAAATGGCACAT
Found at i:36740892 original size:21 final size:21
Alignment explanation
Indices: 36740856--36740931 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
36740846 ATCAGTCCGC
* * *
36740856 ATAACATGATTGACAATACAT
1 ATAACATAATTAACAATTCAT
* *
36740877 ATAACATAGTTAACAATTCAC
1 ATAACATAATTAACAATTCAT
* **
36740898 ATGACATAATTAACTGTTCAT
1 ATAACATAATTAACAATTCAT
36740919 ATAACATAATTAA
1 ATAACATAATTAA
36740932 AAGTTCGCAT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (21 bp):
ATAACATAATTAACAATTCAT
Found at i:36740937 original size:21 final size:21
Alignment explanation
Indices: 36740877--36740946 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
36740867 GACAATACAT
*
36740877 ATAACATAGTTAACAA-TTCAC
1 ATAACATAATTAA-AAGTTCAC
* ** *
36740898 ATGACATAATTAACTGTTCAT
1 ATAACATAATTAAAAGTTCAC
*
36740919 ATAACATAATTAAAAGTTCGC
1 ATAACATAATTAAAAGTTCAC
36740940 ATAACAT
1 ATAACAT
36740947 TACACAAGCA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.46, C:0.16, G:0.07, T:0.31
Consensus pattern (21 bp):
ATAACATAATTAAAAGTTCAC
Found at i:36741820 original size:18 final size:18
Alignment explanation
Indices: 36741725--36741931 Score: 128
Period size: 18 Copynumber: 11.5 Consensus size: 18
36741715 TATAAATAAC
* *
36741725 ACAGTTCACTAAATTAAT
1 ACAGTTCGCCAAATTAAT
* * *
36741743 ACAATTCACCAAATTAAC
1 ACAGTTCGCCAAATTAAT
* * * *
36741761 ACAATTTGTCAAATTAAA
1 ACAGTTCGCCAAATTAAT
*
36741779 ACAGTTCGCCAAATTATT
1 ACAGTTCGCCAAATTAAT
* *
36741797 AGAGTTCGCCAAGTTAAT
1 ACAGTTCGCCAAATTAAT
** * *
36741815 ACAGTTCATCAAGTTATT
1 ACAGTTCGCCAAATTAAT
* *
36741833 ACAATTTGCCAAATTAACT
1 ACAGTTCGCCAAATTAA-T
* *
36741852 -CAATTTGCCAAATTAAT
1 ACAGTTCGCCAAATTAAT
** * * *
36741869 GTAGTTCTCCAATTTAGT
1 ACAGTTCGCCAAATTAAT
* *
36741887 ACAGTTCGCCAAGTTAAC
1 ACAGTTCGCCAAATTAAT
* * *
36741905 ATAGTTCTCCATATTAAT
1 ACAGTTCGCCAAATTAAT
36741923 ACAGTTCGC
1 ACAGTTCGC
36741932 ATGATTATAG
Statistics
Matches: 143, Mismatches: 44, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
17 1 0.01
18 141 0.99
19 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (18 bp):
ACAGTTCGCCAAATTAAT
Found at i:36741838 original size:72 final size:72
Alignment explanation
Indices: 36741738--36741905 Score: 185
Period size: 72 Copynumber: 2.3 Consensus size: 72
36741728 GTTCACTAAA
* * * * *
36741738 TTAATACAATTCACCAAATTAACACAATTTGTCAAATTAAAACAGTTCGCCAAATTATTAG-AGT
1 TTAATACAGTTCACCAAGTTAACACAATTTGCCAAATTAAAACAATTCGCCAAATTAAT-GTAGT
36741802 TCGCCAAG
65 TCGCCAAG
* ** ** *
36741810 TTAATACAGTTCATCAAGTTATTACAATTTGCCAAATTAACTCAATTTGCCAAATTAATGTAGTT
1 TTAATACAGTTCACCAAGTTAACACAATTTGCCAAATTAAAACAATTCGCCAAATTAATGTAGTT
* *
36741875 CTCCAAT
66 CGCCAAG
* *
36741882 TTAGTACAGTTCGCCAAGTTAACA
1 TTAATACAGTTCACCAAGTTAACA
36741906 TAGTTCTCCA
Statistics
Matches: 77, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
71 1 0.01
72 76 0.99
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (72 bp):
TTAATACAGTTCACCAAGTTAACACAATTTGCCAAATTAAAACAATTCGCCAAATTAATGTAGTT
CGCCAAG
Found at i:36741911 original size:90 final size:90
Alignment explanation
Indices: 36741721--36741911 Score: 231
Period size: 90 Copynumber: 2.1 Consensus size: 90
36741711 TTCGTATAAA
* * *
36741721 TAACACAGTTCA-CTAAATTAATACAATTCACCAAATTAACACAATTTGTCAAATTAAAACAGTT
1 TAACACAGTTCATC-AAGTTATTACAATTCACCAAATTAACACAATTTGCCAAATTAAAACAGTT
* *
36741785 CGCCAAATTATTAGAGTTCGCCAAGT
65 CGCCAAATTAGTACAGTTCGCCAAGT
* ** * ***
36741811 TAATACAGTTCATCAAGTTATTACAATTTGCCAAATTAACTCAATTTGCCAAATTAATGTAGTTC
1 TAACACAGTTCATCAAGTTATTACAATTCACCAAATTAACACAATTTGCCAAATTAAAACAGTTC
* *
36741876 TCCAATTTAGTACAGTTCGCCAAGT
66 GCCAAATTAGTACAGTTCGCCAAGT
*
36741901 TAACATAGTTC
1 TAACACAGTTC
36741912 TCCATATTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 83 0.99
91 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.32
Consensus pattern (90 bp):
TAACACAGTTCATCAAGTTATTACAATTCACCAAATTAACACAATTTGCCAAATTAAAACAGTTC
GCCAAATTAGTACAGTTCGCCAAGT
Found at i:36747458 original size:18 final size:19
Alignment explanation
Indices: 36747423--36747461 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
36747413 ATGAAATTTA
36747423 AATACAATTTAAATTTAAT
1 AATACAATTTAAATTTAAT
36747442 AATA-AATTGTAAA-TTAAT
1 AATACAATT-TAAATTTAAT
36747460 AA
1 AA
36747462 AAAGAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (19 bp):
AATACAATTTAAATTTAAT
Found at i:36749810 original size:58 final size:59
Alignment explanation
Indices: 36749732--36749986 Score: 246
Period size: 59 Copynumber: 4.3 Consensus size: 59
36749722 TATTGATAAA
* * * *
36749732 TGATGAAATCGGGGTGAAAAACGGGA-CTT-ATGGATACTCGAGGGCAAAATGGTAA-TTT
1 TGATGAAATCGGGGTTAAAAACGGAATCTTAAAGGAT--TCGAGGGCAAAATGATAATTTT
* * * * *
36749790 TGGTGAAATCGGGGTTAAAAATGGAATTTTAAAGGATTCGGGGGTAAAATGATAATTTT
1 TGATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATTCGAGGGCAAAATGATAATTTT
** * * *
36749849 TGATGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTT
1 TGATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATTCGAGGGCAAAATGATAATTTT
* ** * * * *
36749908 CGATGAAATTAGGGTTAAAAACGGAATTTTAAAAGATTCGAGGGTAAAATGGTAATTTT
1 TGATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATTCGAGGGCAAAATGATAATTTT
* * **
36749967 CGGTGAAATTAGGGTTAAAA
1 TGATGAAATCGGGGTTAAAA
36749987 TGTAATTTTG
Statistics
Matches: 174, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
58 37 0.21
59 132 0.76
60 5 0.03
ACGTcount: A:0.38, C:0.05, G:0.27, T:0.29
Consensus pattern (59 bp):
TGATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATTCGAGGGCAAAATGATAATTTT
Found at i:36749819 original size:29 final size:29
Alignment explanation
Indices: 36749777--36749937 Score: 98
Period size: 29 Copynumber: 5.4 Consensus size: 29
36749767 ACTCGAGGGC
*
36749777 AAAATGGTAATTTTGGTGAAATCGGGGTTA
1 AAAATGG-AATTTTGATGAAATCGGGGTTA
* * * * *
36749807 AAAATGGAATTTTAAAGGATTCGGGGGT-
1 AAAATGGAATTTTGATGAAATCGGGGTTA
*
36749835 AAAATGATAATTTTTGATGAAATCGGGGTTA
1 AAAATG-GAA-TTTTGATGAAATCGGGGTTA
* *
36749866 AAAATAGAATTTT-A-AAAGATTCGAGGG-T-
1 AAAATGGAATTTTGATGAA-A-TCG-GGGTTA
* **
36749894 AAAATGATAATTTTCGATGAAATTAGGGTTA
1 AAAATG-GAATTTT-GATGAAATCGGGGTTA
*
36749925 AAAACGGAATTTT
1 AAAATGGAATTTT
36749938 AAAAGATTCG
Statistics
Matches: 97, Mismatches: 22, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
27 2 0.02
28 13 0.13
29 34 0.35
30 34 0.35
31 12 0.12
32 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (29 bp):
AAAATGGAATTTTGATGAAATCGGGGTTA
Found at i:36749864 original size:59 final size:59
Alignment explanation
Indices: 36749769--36750025 Score: 306
Period size: 59 Copynumber: 4.4 Consensus size: 59
36749759 TTATGGATAC
* * * * *
36749769 TCGAGGGCAAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTAAAGGAT
1 TCGAGGGTAAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAAGAT
* * * *
36749827 TCGGGGGTAAAATGATAATTTTTGATGAAATCGGGGTTAAAAATAGAATTTTAAAAGAT
1 TCGAGGGTAAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAAGAT
* *
36749886 TCGAGGGTAAAATGATAATTTTCGATGAAATTAGGGTTAAAAACGGAATTTTAAAAGAT
1 TCGAGGGTAAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAAGAT
* * * * *
36749945 TCGAGGGTAAAATGGTAATTTTCGGTGAAATTAGGGTT-AAAATGTAATTTTGGAAAAGTT
1 TCGAGGGTAAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTT--AAAAGAT
*
36750005 TTG-GGGTTAAAATG-TAATTTT
1 TCGAGGG-TAAAATGATAATTTT
36750026 GGTAAAGTTT
Statistics
Matches: 177, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
58 30 0.17
59 132 0.75
60 15 0.08
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (59 bp):
TCGAGGGTAAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAAGAT
Found at i:36749952 original size:30 final size:29
Alignment explanation
Indices: 36749805--36749966 Score: 95
Period size: 29 Copynumber: 5.5 Consensus size: 29
36749795 AAATCGGGGT
* *
36749805 TAAAAATGGAATTTTAAAGGATTCGGGGG
1 TAAAAATGGAATTTTAAAAGATTCGAGGG
* ** * *
36749834 T-AAAATGATAATTTTTGATGAAATCG-GGG
1 TAAAAATG-GAATTTTAAAAG-ATTCGAGGG
*
36749863 TTAAAAATAGAATTTTAAAAGATTCGAGGG
1 -TAAAAATGGAATTTTAAAAGATTCGAGGG
* *
36749893 T-AAAATGATAATTTTCGATGAA-ATT--AGGG
1 TAAAAATG-GAATTTT--A-AAAGATTCGAGGG
*
36749922 TTAAAAACGGAATTTTAAAAGATTCGAGGG
1 -TAAAAATGGAATTTTAAAAGATTCGAGGG
36749952 T-AAAATGGTAATTTT
1 TAAAAATGG-AATTTT
36749967 CGGTGAAATT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
27 2 0.02
28 21 0.21
29 34 0.34
30 27 0.27
31 14 0.14
32 2 0.02
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (29 bp):
TAAAAATGGAATTTTAAAAGATTCGAGGG
Found at i:36749980 original size:29 final size:29
Alignment explanation
Indices: 36749889--36749995 Score: 82
Period size: 29 Copynumber: 3.7 Consensus size: 29
36749879 AAAAGATTCG
*
36749889 AGGG-TAAAATGATAATTTTCGATGAAATT
1 AGGGTTAAAATGGTAATTTTCG-TGAAATT
* **
36749918 AGGGTTAAAAACGG-AATTTT--AAAAGATT
1 AGGGTT-AAAATGGTAATTTTCGTGAA-ATT
36749946 CGAGGG-TAAAATGGTAATTTTCGGTGAAATT
1 --AGGGTTAAAATGGTAATTTTC-GTGAAATT
36749977 AGGGTTAAAAT-GTAATTTT
1 AGGGTTAAAATGGTAATTTT
36749996 GGAAAAGTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
27 2 0.03
28 9 0.15
29 23 0.38
30 17 0.28
31 8 0.13
32 2 0.03
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.34
Consensus pattern (29 bp):
AGGGTTAAAATGGTAATTTTCGTGAAATT
Found at i:36750012 original size:30 final size:30
Alignment explanation
Indices: 36749978--36750225 Score: 329
Period size: 30 Copynumber: 8.2 Consensus size: 30
36749968 GGTGAAATTA
*
36749978 GGGTTAAAATGTAATTTTGGAAAAGTTTTG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
* *
36750008 GGGTTAAAATGTAATTTTGGTAAAG-TTTG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
36750037 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
* *
36750067 GGATCAAAATGTAATTTT-GATAAAGTTTCG
1 GGGTCAAAATGTAATTTTGGA-AAAGTTTTG
* *
36750097 GGGTCAAAAATATAATTTTGGAAAAGTTTTA
1 GGGTC-AAAATGTAATTTTGGAAAAGTTTTG
*
36750128 GGGTCAAAATGTAATTTTGGAAAAGTTTTA
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
* * * *
36750158 GAGTCAAAATGTAATTTTGGTAATGTTTCG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTG
* *
36750188 GGGTCAAAAATATAATTTTGGTAAAGTTTTG
1 GGGTC-AAAATGTAATTTTGGAAAAGTTTTG
36750219 GGGTCAA
1 GGGTCAA
36750226 TATAATTTCT
Statistics
Matches: 194, Mismatches: 19, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
29 29 0.15
30 112 0.58
31 51 0.26
32 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
GGGTCAAAATGTAATTTTGGAAAAGTTTTG
Found at i:36750135 original size:61 final size:60
Alignment explanation
Indices: 36749978--36750225 Score: 329
Period size: 61 Copynumber: 4.1 Consensus size: 60
36749968 GGTGAAATTA
* * *
36749978 GGGTTAAAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTTGGTAAAG-TTTG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGATAAAGTTTTG
* *
36750037 GGGTCAAAATGTAATTTTGGAAAAGTTTTGGGATCAAAATGTAATTTTGATAAAGTTTCG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGATAAAGTTTTG
* * *
36750097 GGGTCAAAAATATAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTTGGA-AAAGTTTTA
1 GGGTC-AAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTT-GATAAAGTTTTG
* * * * * *
36750158 GAGTCAAAATGTAATTTTGGTAATGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTG
1 GGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTC-AAAATGTAATTTTGATAAAGTTTTG
36750219 GGGTCAA
1 GGGTCAA
36750226 TATAATTTCT
Statistics
Matches: 164, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
59 51 0.31
60 34 0.21
61 77 0.47
62 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (60 bp):
GGGTCAAAATGTAATTTTGGAAAAGTTTTGGGGTCAAAATGTAATTTTGATAAAGTTTTG
Found at i:36750153 original size:91 final size:91
Alignment explanation
Indices: 36749983--36750225 Score: 368
Period size: 91 Copynumber: 2.7 Consensus size: 91
36749973 AATTAGGGTT
* * *
36749983 AAAATGTAATTTTGGA-AAAGTTTTGGGGT-TAAAATGTAATTTTGGTAAAG-TTTGGGGTCAAA
1 AAAATGTAATTTT-GATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTGGGGTCAAA
*
36750045 ATGTAATTTTGGAAAAGTTTT-GGGATC
65 ATGTAATTTTGGAAAAGTTTTAGAG-TC
* *
36750072 AAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGAAAAGTTTTAGGGTCAAAA
1 AAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTGGGGTCAAAA
36750137 TGTAATTTTGGAAAAGTTTTAGAGTC
66 TGTAATTTTGGAAAAGTTTTAGAGTC
* *
36750163 AAAATGTAATTTTGGTAATGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTGGGGTCAA
1 AAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTGGGGTCAA
36750226 TATAATTTCT
Statistics
Matches: 140, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
88 2 0.01
89 25 0.18
90 18 0.13
91 93 0.66
92 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.37
Consensus pattern (91 bp):
AAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTGGGGTCAAAA
TGTAATTTTGGAAAAGTTTTAGAGTC
Found at i:36750636 original size:161 final size:160
Alignment explanation
Indices: 36750331--36750641 Score: 441
Period size: 161 Copynumber: 1.9 Consensus size: 160
36750321 ATTTGAAAAT
**
36750331 CTTGAAAAAATTTTGGACCAATTTTGTAATTAAATAAAAGTTGATTTAAGGATTAAATTAAAACA
1 CTTGAAAAAATTTTGGACCAATTTCATAATTAAATAAAAGTTGATTTAAGGATTAAATTAAAACA
* * *
36750396 AATTAAAAAAAAGGACTAAATGCAGAAATAATCAAAAAAGATGACACGTGGCAACCTCTAGTGCA
66 AATAAAAAAAAAGGACTAAATGCAGAAATAATCAAAAAAGATGACACGTGGCAACCTATAGTACA
36750461 GTCAAACAGTCAAAGGACTAGTTTATAAAC
131 GTCAAACAGTCAAAGGACTAGTTTATAAAC
* *
36750491 CTTG-AAAAATTATTGGGCCAATTTCATAATTAAA-ATAAAGTTGATTT-GGGATTAAATTAAAA
1 CTTGAAAAAATT-TTGGACCAATTTCATAATTAAATA-AAAGTTGATTTAAGGATTAAATTAAAA
* * * *
36750553 CAAATAAAAAATAAAAAGGACTAAATGCATAAATAATCCAAAAAG-TGACACGTGGCAGCCTATG
64 CAAAT--AAAA-AAAAAGGACTAAATGCAGAAATAATCAAAAAAGATGACACGTGGCAACCTATA
*
36750617 GTATAGTCAAACAGTCAAAGGACTA
126 GTACAGTCAAACAGTCAAAGGACTA
36750642 AATTGAAAAG
Statistics
Matches: 134, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
159 27 0.20
160 34 0.25
161 42 0.31
162 31 0.23
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.25
Consensus pattern (160 bp):
CTTGAAAAAATTTTGGACCAATTTCATAATTAAATAAAAGTTGATTTAAGGATTAAATTAAAACA
AATAAAAAAAAAGGACTAAATGCAGAAATAATCAAAAAAGATGACACGTGGCAACCTATAGTACA
GTCAAACAGTCAAAGGACTAGTTTATAAAC
Found at i:36751134 original size:11 final size:10
Alignment explanation
Indices: 36751107--36751158 Score: 50
Period size: 11 Copynumber: 4.8 Consensus size: 10
36751097 GTAAGCCGTC
36751107 CTTCTTTCTTCT
1 CTTCTTT-TT-T
36751119 CTTCTTTTCTT
1 CTTCTTTT-TT
36751130 CTTCTTTTTT
1 CTTCTTTTTT
*
36751140 CCTTCCTTTTT
1 -CTTCTTTTTT
*
36751151 ATTCTTTT
1 CTTCTTTT
36751159 GATTTCTGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
10 8 0.23
11 19 0.54
12 8 0.23
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (10 bp):
CTTCTTTTTT
Found at i:36752029 original size:16 final size:17
Alignment explanation
Indices: 36752010--36752057 Score: 75
Period size: 15 Copynumber: 3.0 Consensus size: 17
36752000 CAGGGCATTG
36752010 TGGAGCTGGTGGTGG-A
1 TGGAGCTGGTGGTGGCA
36752026 TGGAGCTGGTGGTGGCA
1 TGGAGCTGGTGGTGGCA
36752043 --GAGCTGGTGGTGGCA
1 TGGAGCTGGTGGTGGCA
36752058 GCAGCATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.48
16 15 0.48
17 1 0.03
ACGTcount: A:0.12, C:0.10, G:0.54, T:0.23
Consensus pattern (17 bp):
TGGAGCTGGTGGTGGCA
Found at i:36752137 original size:14 final size:14
Alignment explanation
Indices: 36752118--36752178 Score: 90
Period size: 14 Copynumber: 4.5 Consensus size: 14
36752108 TTGGGCCTAT
36752118 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
*
36752132 TTGGGCC-CT-TAA
1 TTGGGCCATTGTAA
*
36752144 TTGGGCCTTTGTAA
1 TTGGGCCATTGTAA
36752158 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
36752172 TTGGGCC
1 TTGGGCC
36752179 CTAGGCCATG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 10 0.24
13 2 0.05
14 30 0.71
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (14 bp):
TTGGGCCATTGTAA
Found at i:36752155 original size:26 final size:28
Alignment explanation
Indices: 36752118--36752178 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
36752108 TTGGGCCTAT
36752118 TTGGGCCATTGTAATTGGGCC-CT-TAA
1 TTGGGCCATTGTAATTGGGCCACTGTAA
* *
36752144 TTGGGCCTTTGTAATTGGGCCATTGTAA
1 TTGGGCCATTGTAATTGGGCCACTGTAA
36752172 TTGGGCC
1 TTGGGCC
36752179 CTAGGCCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 20 0.65
27 1 0.03
28 10 0.32
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (28 bp):
TTGGGCCATTGTAATTGGGCCACTGTAA
Found at i:36752225 original size:17 final size:16
Alignment explanation
Indices: 36752205--36752273 Score: 77
Period size: 17 Copynumber: 4.1 Consensus size: 16
36752195 GACTTTCTTT
36752205 TTAAATTTATAA-TAACA
1 TTAAATTTA-AATTAA-A
36752222 TTAAATTTAAATTAAA
1 TTAAATTTAAATTAAA
36752238 TTCAAATTTAAATTTAAA
1 TT-AAATTTAAA-TTAAA
* *
36752256 TTGAATTTAAAATAAA
1 TTAAATTTAAATTAAA
36752272 TT
1 TT
36752274 TAAGATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
16 11 0.23
17 29 0.62
18 7 0.15
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:36752231 original size:6 final size:6
Alignment explanation
Indices: 36752222--36752276 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
36752212 TATAATAACA
* *
36752222 TTAAAT TTAAA- TTAAAT TCAAAT TTAAAT TTAAA- TTGAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
36752267 ATAAAT TTAA
1 TTAAAT TTAA
36752277 GATTAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 13 0.32
6 27 0.68
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (6 bp):
TTAAAT
Found at i:36752237 original size:11 final size:11
Alignment explanation
Indices: 36752221--36752283 Score: 81
Period size: 11 Copynumber: 5.5 Consensus size: 11
36752211 TTATAATAAC
36752221 ATTAAATTTAA
1 ATTAAATTTAA
*
36752232 ATTAAATTCAA
1 ATTAAATTTAA
36752243 ATTTAAATTTAA
1 A-TTAAATTTAA
*
36752255 ATTGAATTTAA
1 ATTAAATTTAA
*
36752266 AATAAATTTAA
1 ATTAAATTTAA
36752277 GATTAAA
1 -ATTAAA
36752284 ATAAATTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
11 29 0.66
12 15 0.34
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:36752713 original size:68 final size:68
Alignment explanation
Indices: 36752629--36753236 Score: 873
Period size: 68 Copynumber: 8.9 Consensus size: 68
36752619 GGAAATGATC
* * *
36752629 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTATTTCAATTTCGAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
36752694 ACG
66 ACG
* * ** ** *
36752697 TTGCTTTTACTCCAATTTCAGAGATAAAGATTTAATATCCAACTCTACTTCAATTTCAAGAGGAC
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT
*
36752762 GATG
65 GACG
* *
36752766 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTTCAAGAGGA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAA-TTTCAAGAGGA
36752831 TGACG
64 TGACG
* *
36752836 TTGCTTTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
**
36752901 AAA
66 ACG
*
36752904 TTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
*
36752968 GACA
65 GACG
36752972 TTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAG-GGAA
1 TTGCTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGG-A
36753035 TGACG
64 TGACG
* * *
36753040 TTGCTCTTACTTCAATTTCAGAGATAAGGACTTGATATCCAACTCTACTTCAATTTTCAAGAGGA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAA-TTTCAAGAGGA
36753105 TGACG
64 TGACG
*
36753110 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
**
36753175 AAA
66 ACG
*
36753178 TTGCTCTTACTTCAATTTCAGAGATGGAA-ACGTGTTATCCACTCTACTTCAATTTCAAG
1 TTGCTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAG
36753237 GGAACGATGT
Statistics
Matches: 494, Mismatches: 37, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
67 4 0.01
68 276 0.56
69 113 0.23
70 99 0.20
71 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (68 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
ACG
Found at i:36752752 original size:38 final size:36
Alignment explanation
Indices: 36752704--36752821 Score: 102
Period size: 38 Copynumber: 3.3 Consensus size: 36
36752694 ACGTTGCTTT
*
36752704 TACTCCAATTTCAGAGATAAAGATTTAATATCCAACTC
1 TACTTCAATTTCAGAGATAAAGA-TT-ATATCCAACTC
** * * * *
36752742 TACTTCAATTTCA-AGAGGACGA-TGT-TGC-TCT-
1 TACTTCAATTTCAGAGATAAAGATTATATCCAACTC
36752773 TACTTCAATTTCAGAGATAAAGACTTGATATCCAACTC
1 TACTTCAATTTCAGAGATAAAGA-TT-ATATCCAACTC
36752811 TACTTCAATTT
1 TACTTCAATTT
36752822 TCAAGAGGAT
Statistics
Matches: 60, Mismatches: 13, Indels: 14
0.69 0.15 0.16
Matches are distributed among these distances:
31 13 0.22
32 8 0.13
33 2 0.03
34 2 0.03
35 2 0.03
36 2 0.03
37 8 0.13
38 23 0.38
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (36 bp):
TACTTCAATTTCAGAGATAAAGATTATATCCAACTC
Found at i:36753100 original size:206 final size:203
Alignment explanation
Indices: 36752629--36753240 Score: 897
Period size: 206 Copynumber: 3.0 Consensus size: 203
36752619 GGAAATGATC
* * *
36752629 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTATTTCAATTTCGAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGAT-AAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
* * ** **
36752694 ACGTTGCTTTTACTCCAATTTCAGAGAT-AAAGATTTAATATCCAACTCTACTTCAATTTCAAGA
65 ACGTTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCC-ACTCTACTTCAATTTCAAGA
* ** * *
36752758 GGACGATGTTGCTCTTACTTCAATTTCAGAGAT-AAAGACTTGATATCCAACTCTACTTCAATTT
128 GGATGAAATTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCC-ACTCTACTTCAA-TT
36752822 TCAAGAGG-ATGACG
190 TCAAG-GGAATGACG
*
36752836 TTGCTTTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
1 TTGCTCTTACTTCAATTTCAGAGAT-AAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
** *
36752901 AAATTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGGGG
65 ACGTTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGAGG
*
36752966 ATGACATTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAG
130 ATGAAATTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAG
36753031 GGAATGACG
195 GGAATGACG
* *
36753040 TTGCTCTTACTTCAATTTCAGAGATAAGGACTTGATATCCAACTCTACTTCAATTTTCAAGAGGA
1 TTGCTCTTACTTCAATTTCAGAGATAA-GACGTGTTATCC-ACTCTACTTCAA-TTTCAAGAGGA
*
36753105 TGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGA
63 TGACGTTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGA
*
36753170 GGATGAAATTGCTCTTACTTCAATTTCAGAGATGGAAACGTGTTATCCACTCTACTTCAATTTCA
128 GGATGAAATTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCA
36753235 AGGGAA
193 AGGGAA
36753241 CGATGTTGAG
Statistics
Matches: 371, Mismatches: 28, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
203 4 0.01
204 47 0.13
205 24 0.06
206 199 0.54
207 94 0.25
208 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (203 bp):
TTGCTCTTACTTCAATTTCAGAGATAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGA
CGTTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGAGGA
TGAAATTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGG
GAATGACG
Found at i:36753122 original size:274 final size:275
Alignment explanation
Indices: 36752629--36753238 Score: 1039
Period size: 274 Copynumber: 2.2 Consensus size: 275
36752619 GGAAATGATC
* *
36752629 TTGCTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTATTTCAATTTCGAGGGGAT
1 TTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAGGGGAT
* * **
36752693 GACGTTGCTTTTACTCCAATTTCAGAGATAAAGATTTAATATCCAACTCTACTTCAATTTCAAGA
65 GACATTGCTCTTACTCCAATTTCAGAGATAAAGACGTAATATCCAACTCTACTTCAATTTCAAGA
*
36752758 GGACGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTT
130 GGACGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTT
*
36752823 CAAGAGGATGACGTTGCTTTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAA
195 CAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAA
36752888 TTTCAAGAGGATGAAA
260 TTTCAAGAGGATGAAA
36752904 TTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
1 TTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
* **
36752969 ACATTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCC-ACTCTACTTCAATTTCAAG-
66 ACATTGCTCTTACTCCAATTTCAGAGAT-AAAGACGTAATATCCAACTCTACTTCAATTTCAAGA
* *
36753031 GGAATGACGTTGCTCTTACTTCAATTTCAGAGATAAGGACTTGATATCCAACTCTACTTCAATTT
130 GG-ACGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTT
36753096 TCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCA
194 TCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCA
36753161 ATTTCAAGAGGATGAAA
259 ATTTCAAGAGGATGAAA
*
36753178 TTGCTCTTACTTCAATTTCAGAGATGGAAACGTGTTATCCACTCTACTTCAATTTCAAGGG
1 TTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGGG
36753239 AACGATGTTG
Statistics
Matches: 318, Mismatches: 14, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
273 2 0.01
274 219 0.69
275 91 0.29
276 6 0.02
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (275 bp):
TTGCTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGGGGATG
ACATTGCTCTTACTCCAATTTCAGAGATAAAGACGTAATATCCAACTCTACTTCAATTTCAAGAG
GACGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAACTCTACTTCAATTTTC
AAGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAAT
TTCAAGAGGATGAAA
Found at i:36765202 original size:29 final size:29
Alignment explanation
Indices: 36765170--36765337 Score: 85
Period size: 29 Copynumber: 5.7 Consensus size: 29
36765160 TATGGATACC
* *
36765170 CGGGGGCAAAATGGTAATTTTGGTGAAAT
1 CGGGGGAAAAATGGTAATTTTGATGAAAT
* * * * *
36765199 CGGGGTTAAAAATGG-AATTTTAAAGGATT
1 CGGGG-GAAAAATGGTAATTTTGATGAAAT
* *
36765228 CGGGGGTAAAATGATAATTTTCGATGAAAT
1 CGGGGGAAAAATGGTAATTTT-GATGAAAT
* * *
36765258 CGGGGTTAAAAATAG-AATTTT-A-AAAGATT
1 CGGGG-GAAAAATGGTAATTTTGATGAA-A-T
* * *
36765287 CGAGGGTAAAATGATAATTTTCGATGAAAT
1 CGGGGGAAAAATGGTAATTTT-GATGAAAT
**
36765317 CAGGGTTAAAAATGG-AATTTT
1 C-GGGGGAAAAATGGTAATTTT
36765338 AAAATATTCG
Statistics
Matches: 98, Mismatches: 30, Indels: 21
0.66 0.20 0.14
Matches are distributed among these distances:
27 2 0.02
28 13 0.13
29 36 0.37
30 30 0.31
31 15 0.15
32 2 0.02
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.30
Consensus pattern (29 bp):
CGGGGGAAAAATGGTAATTTTGATGAAAT
Found at i:36765210 original size:58 final size:59
Alignment explanation
Indices: 36765133--36765494 Score: 237
Period size: 59 Copynumber: 6.3 Consensus size: 59
36765123 ATTGATAAAT
* * * * *
36765133 GATGAAACCGGGGTGAAAAACGGGA-CTT-ATGGATACCCGGGGGCAAAATGGTAATTTT-
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGAT--CCGGGGGCAAAATGATAATTTTC
* * * * *
36765191 GGTGAAATCGGGGTTAAAAATGGAATTTTAAAGGATTCGGGGGTAAAATGATAATTTTC
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
** * * * * *
36765250 GATGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTC
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
* * * ** * * *
36765309 GATGAAATCAGGGTTAAAAATGGAATTTTAAAATATTCGAGGGTAAAATG---------
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
** * * * * *
36765359 G-TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTC
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
* * * * * * * *
36765417 GATGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGGTAATTTTC
1 GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
* *
36765476 GGTGAAATTGGGGTTAAAA
1 GATGAAATCGGGGTTAAAA
36765495 TGTAATTTTG
Statistics
Matches: 265, Mismatches: 26, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
49 45 0.17
50 1 0.00
58 40 0.15
59 174 0.66
60 5 0.02
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.28
Consensus pattern (59 bp):
GATGAAATCGGGGTTAAAAACGGAATCTTAAAGGATCCGGGGGCAAAATGATAATTTTC
Found at i:36765213 original size:30 final size:29
Alignment explanation
Indices: 36765177--36765337 Score: 116
Period size: 30 Copynumber: 5.4 Consensus size: 29
36765167 ACCCGGGGGC
*
36765177 AAAATGGTAATTTTGGTGAAATCGGGGTTA
1 AAAATGG-AATTTTGATGAAATCGGGGTTA
* * * * *
36765207 AAAATGGAATTTTAAAGGATTCGGGGGT-
1 AAAATGGAATTTTGATGAAATCGGGGTTA
*
36765235 AAAATGATAATTTTCGATGAAATCGGGGTTA
1 AAAATG-GAATTTT-GATGAAATCGGGGTTA
* *
36765266 AAAATAGAATTTT-A-AAAGATTCGAGGG-T-
1 AAAATGGAATTTTGATGAA-A-TCG-GGGTTA
* *
36765294 AAAATGATAATTTTCGATGAAATCAGGGTTA
1 AAAATG-GAATTTT-GATGAAATCGGGGTTA
36765325 AAAATGGAATTTT
1 AAAATGGAATTTT
36765338 AAAATATTCG
Statistics
Matches: 99, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
27 2 0.02
28 13 0.13
29 34 0.34
30 35 0.35
31 13 0.13
32 2 0.02
ACGTcount: A:0.40, C:0.04, G:0.24, T:0.32
Consensus pattern (29 bp):
AAAATGGAATTTTGATGAAATCGGGGTTA
Found at i:36765270 original size:59 final size:59
Alignment explanation
Indices: 36765177--36765533 Score: 454
Period size: 59 Copynumber: 6.2 Consensus size: 59
36765167 ACCCGGGGGC
* * * *
36765177 AAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTAAAGGATTCGGGGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
*
36765235 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
* *
36765294 AAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAATATTCGAGGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
*
36765353 AAAATG---------G-TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
*
36765402 AAAATGATAATTTTCGATGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
* * * * * *
36765461 AAAATGGTAATTTTCGGTGAAATTGGGGTT-AAAATGTAATTTTGGAAAAGTTTTG-GGGT
1 AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTT--AAAAGATTCGAGGGT
36765520 CAAAATG-TAATTTT
1 -AAAATGATAATTTT
36765534 GGTAAAGTTT
Statistics
Matches: 265, Mismatches: 20, Indels: 27
0.85 0.06 0.09
Matches are distributed among these distances:
49 45 0.17
50 1 0.00
58 26 0.10
59 179 0.68
60 14 0.05
ACGTcount: A:0.39, C:0.04, G:0.24, T:0.32
Consensus pattern (59 bp):
AAAATGATAATTTTCGATGAAATCGGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGT
Found at i:36765352 original size:30 final size:29
Alignment explanation
Indices: 36765201--36765474 Score: 119
Period size: 29 Copynumber: 9.7 Consensus size: 29
36765191 GGTGAAATCG
*
36765201 GGGTTAAAAATGGAATTTTAAAGGATTCG-
1 GGGTTAAAAATGGAATTTTAAA-AATTCGA
* * *
36765230 GGGGT-AAAATGATAATTTTCGATGAAA-TCG-
1 GGGTTAAAAATG-GAATTTT--A-AAAATTCGA
*
36765260 GGGTTAAAAATAGAATTTTAAAAGATTCGA
1 GGGTTAAAAATGGAATTTTAAAA-ATTCGA
* *
36765290 GGG-T-AAAATGATAATTTTCGATGAAA-TC-A
1 GGGTTAAAAATG-GAATTTT--A-AAAATTCGA
36765319 GGGTTAAAAATGGAATTTTAAAATATTCGA
1 GGGTTAAAAATGGAATTTTAAAA-ATTCGA
*
36765349 GGG-T-AAAATGG-----T-GAAA-TCG-
1 GGGTTAAAAATGGAATTTTAAAAATTCGA
*
36765368 GGGTTAAAAATAGAATTTTAAAAGATTCGA
1 GGGTTAAAAATGGAATTTTAAAA-ATTCGA
* *
36765398 GGG-T-AAAATGATAATTTTCGATGAAA-TC-A
1 GGGTTAAAAATG-GAATTTT--A-AAAATTCGA
36765427 GGGTTAAAAATGGAATTTTAAAAGATTCGA
1 GGGTTAAAAATGGAATTTTAAAA-ATTCGA
36765457 GGG-T-AAAATGGTAATTTT
1 GGGTTAAAAATGG-AATTTT
36765475 CGGTGAAATT
Statistics
Matches: 186, Mismatches: 21, Indels: 76
0.66 0.07 0.27
Matches are distributed among these distances:
19 3 0.02
20 4 0.02
21 7 0.04
22 2 0.01
23 1 0.01
26 1 0.01
27 8 0.04
28 37 0.20
29 50 0.27
30 45 0.24
31 23 0.12
32 5 0.03
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (29 bp):
GGGTTAAAAATGGAATTTTAAAAATTCGA
Found at i:36765365 original size:49 final size:49
Alignment explanation
Indices: 36765311--36765468 Score: 199
Period size: 49 Copynumber: 3.0 Consensus size: 49
36765301 TAATTTTCGA
*
36765311 TGAAATCAGGGTTAAAAATGGAATTTTAAAATATTCGAGGGTAAAATGG
1 TGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
* *
36765360 TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCG
1 TGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATG---------G
36765418 ATGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
1 -TGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
36765468 T
1 T
36765469 AATTTTCGGT
Statistics
Matches: 94, Mismatches: 5, Indels: 20
0.79 0.04 0.17
Matches are distributed among these distances:
49 46 0.49
50 1 0.01
58 1 0.01
59 46 0.49
ACGTcount: A:0.42, C:0.04, G:0.24, T:0.29
Consensus pattern (49 bp):
TGAAATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
Found at i:36765414 original size:29 final size:28
Alignment explanation
Indices: 36765381--36765684 Score: 106
Period size: 30 Copynumber: 10.2 Consensus size: 28
36765371 TTAAAAATAG
36765381 AATTTTAAAAGATTCGAGGGTAAAATGAT
1 AATTTTAAAAGATTCGAGGGTAAAATG-T
** * * *
36765410 AATTTTCGATGAAATC-AGGGTTAAAAATGG
1 AATTTTAAAAG-ATTCGAGGG-T-AAAATGT
36765440 AATTTTAAAAGATTCGAGGGTAAAATGGT
1 AATTTTAAAAGATTCGAGGGTAAAAT-GT
**
36765469 AATTTTCGGTGAA-ATT-G-GGGTTAAAATGT
1 AATTTT---AAAAGATTCGAGGG-TAAAATGT
* *
36765498 AATTTTGGAAAAGTTTTG-GGGTCAAAATGT
1 AATTTT--AAAAGATTCGAGGGT-AAAATGT
* *
36765528 AATTTTGGTAAAGTTTCG-GGGTCAAAATGT
1 AATTTT--AAAAGATTCGAGGGT-AAAATGT
* * *
36765558 AATTTTGGAAAAGTTTTG-GGATCAAAATGT
1 AATTTT--AAAAGATTCGAGGGT-AAAATGT
* *
36765588 AATTTTGATAAAGTTTCG-GGGTCAAAAATAT
1 AATTTT-A-AAAGATTCGAGGGT--AAAATGT
**
36765619 AATTTTGAAAA-AGTTTTAGGGTCAAAATGT
1 AATTTT-AAAAGA-TTCGAGGGT-AAAATGT
**
36765649 AATTTTGGAAAAG-TTTTAGGGTCAAAATGT
1 AATTTT--AAAAGATTCGAGGGT-AAAATGT
36765679 AATTTT
1 AATTTT
36765685 GGTAAAGTTT
Statistics
Matches: 228, Mismatches: 29, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
28 9 0.04
29 39 0.17
30 146 0.64
31 32 0.14
32 2 0.01
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.36
Consensus pattern (28 bp):
AATTTTAAAAGATTCGAGGGTAAAATGT
Found at i:36765418 original size:167 final size:166
Alignment explanation
Indices: 36765190--36765503 Score: 529
Period size: 167 Copynumber: 1.9 Consensus size: 166
36765180 ATGGTAATTT
* * *
36765190 TGGTGAAATCGGGGTTAAAAATGGAATTTTAAAGGATTCGGGGGTAAAATGATAATTTTCGATGA
1 TGGTGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGA
*
36765255 AATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAATCAG
66 AATCAGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAATCAG
36765320 GGTTAAAAATGGAATTTTAAAATATTCGAGGGTAAAA
131 GGTT-AAAATGGAATTTTAAAATATTCGAGGGTAAAA
36765357 TGGTGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGA
1 TGGTGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGA
* * * **
36765422 AATCAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGGTAATTTTCGGTGAAATTGG
66 AATCAGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAATCAG
*
36765487 GGTTAAAATGTAATTTT
131 GGTTAAAATGGAATTTT
36765504 GGAAAAGTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
166 12 0.09
167 125 0.91
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.31
Consensus pattern (166 bp):
TGGTGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGA
AATCAGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAATCAG
GGTTAAAATGGAATTTTAAAATATTCGAGGGTAAAA
Found at i:36765441 original size:108 final size:108
Alignment explanation
Indices: 36765252--36765468 Score: 425
Period size: 108 Copynumber: 2.0 Consensus size: 108
36765242 TAATTTTCGA
36765252 TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAAT
1 TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAAT
*
36765317 CAGGGTTAAAAATGGAATTTTAAAATATTCGAGGGTAAAATGG
66 CAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
36765360 TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAAT
1 TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAAT
36765425 CAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
66 CAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
36765468 T
1 T
36765469 AATTTTCGGT
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.42, C:0.05, G:0.24, T:0.29
Consensus pattern (108 bp):
TGAAATCGGGGTTAAAAATAGAATTTTAAAAGATTCGAGGGTAAAATGATAATTTTCGATGAAAT
CAGGGTTAAAAATGGAATTTTAAAAGATTCGAGGGTAAAATGG
Found at i:36765517 original size:30 final size:30
Alignment explanation
Indices: 36765483--36765745 Score: 357
Period size: 30 Copynumber: 8.7 Consensus size: 30
36765473 TTCGGTGAAA
*
36765483 TTGGGGTTAAAATGTAATTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGAAAAGTT
*
36765513 TTGGGGTCAAAATGTAATTTTGGTAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGAAAAGTT
*
36765543 TCGGGGTCAAAATGTAATTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGAAAAGTT
*
36765573 TTGGGATCAAAATGTAATTTT-GATAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGA-AAAGTT
* * *
36765603 TCGGGGTCAAAAATATAATTTTGAAAAAGTT
1 TTGGGGTC-AAAATGTAATTTTGGAAAAGTT
*
36765634 TTAGGGTCAAAATGTAATTTTGGAAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGAAAAGTT
* *
36765664 TTAGGGTCAAAATGTAATTTTGGTAAAGTT
1 TTGGGGTCAAAATGTAATTTTGGAAAAGTT
* * *
36765694 TCGGGGTCAAAAATATAATTTTGGTAAAGTT
1 TTGGGGTC-AAAATGTAATTTTGGAAAAGTT
* *
36765725 TTAGGGTCAAAATATAATTTT
1 TTGGGGTCAAAATGTAATTTT
36765746 TGGACAATTT
Statistics
Matches: 209, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
29 2 0.01
30 155 0.74
31 51 0.24
32 1 0.00
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (30 bp):
TTGGGGTCAAAATGTAATTTTGGAAAAGTT
Found at i:36765652 original size:91 final size:91
Alignment explanation
Indices: 36765486--36765745 Score: 400
Period size: 91 Copynumber: 2.9 Consensus size: 91
36765476 GGTGAAATTG
* * * **
36765486 GGGTTAAAATGTAATTTTGGA-AAAGTTTTGGGGTC-AAAATGTAATTTTGGTAAAGTTTCGGGG
1 GGGTCAAAATGTAATTTT-GATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTAGGG
36765549 TCAAAATGTAATTTTGGAAAAGTTTT-
65 TCAAAATGTAATTTTGGAAAAGTTTTA
**
36765575 GGGATCAAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGAAAAAGTTTTAGGG
1 GGG-TCAAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTAGGG
36765640 TCAAAATGTAATTTTGGAAAAGTTTTA
65 TCAAAATGTAATTTTGGAAAAGTTTTA
*
36765667 GGGTCAAAATGTAATTTTGGTAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTAGGGT
1 GGGTCAAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTAGGGT
*
36765732 CAAAATATAATTTT
66 CAAAATGTAATTTT
36765746 TGGACAATTT
Statistics
Matches: 156, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
89 5 0.03
90 27 0.17
91 121 0.78
92 3 0.02
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (91 bp):
GGGTCAAAATGTAATTTTGATAAAGTTTCGGGGTCAAAAATATAATTTTGGTAAAGTTTTAGGGT
CAAAATGTAATTTTGGAAAAGTTTTA
Found at i:36766015 original size:162 final size:162
Alignment explanation
Indices: 36765842--36766155 Score: 436
Period size: 162 Copynumber: 1.9 Consensus size: 162
36765832 ATTTGAAAAT
* * *
36765842 CTTGAAAAAATT-TTGGATCAATTTTGTAATT-AAATAAAAGTTGATTTAAGGATTAAATTAAAA
1 CTTGAAAAAATTATTGGACCAATTTCGTAATTAAAAT-AAAGTTGATTT-AGGACTAAATTAAAA
* * *
36765905 TAAATTAAAAATAAAAAGGACTAAATGCAGAAATAATCAAAAAAGATGACACGTGGCAACCTCTA
64 CAAATAAAAAATAAAAAGGACTAAATGCAGAAATAATCAAAAAAG-TGACACGTGGCAACCTATA
* *
36765970 GTGCAGTCAAACAGTCAAAGGACTAGTTTATAAAC
128 GTACAGTCAAACAGTCAAAAGACTAGTTTATAAAC
* *
36766005 CTTG-AAAAATTATTGGGCCAATTTCGTAATTAAAATAAAGTTGATTTGGGACTAAATTAAAACA
1 CTTGAAAAAATTATTGGACCAATTTCGTAATTAAAATAAAGTTGATTTAGGACTAAATTAAAACA
* * * *
36766069 AATAAAAAATAAAAAGGACTAAATGCATAAATAATCCAAAAAGTGACACGTGGCAGCCTATGGTA
66 AATAAAAAATAAAAAGGACTAAATGCAGAAATAATCAAAAAAGTGACACGTGGCAACCTATAGTA
**
36766134 TTGTCAAACAGTCAAAAGACTA
131 CAGTCAAACAGTCAAAAGACTA
36766156 AATTGAAAAG
Statistics
Matches: 133, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
161 37 0.28
162 61 0.46
163 31 0.23
164 4 0.03
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.26
Consensus pattern (162 bp):
CTTGAAAAAATTATTGGACCAATTTCGTAATTAAAATAAAGTTGATTTAGGACTAAATTAAAACA
AATAAAAAATAAAAAGGACTAAATGCAGAAATAATCAAAAAAGTGACACGTGGCAACCTATAGTA
CAGTCAAACAGTCAAAAGACTAGTTTATAAAC
Found at i:36766643 original size:13 final size:13
Alignment explanation
Indices: 36766622--36766655 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
36766612 GTAAGCCGTC
36766622 CTTTTTTCTTC-T
1 CTTTTTTCTTCTT
36766634 CTTCTTTTCTTCTT
1 CTT-TTTTCTTCTT
36766648 CTTTTTTC
1 CTTTTTTC
36766656 CTTCCTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 3 0.15
13 13 0.65
14 4 0.20
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTTTCTTCTT
Found at i:36767546 original size:16 final size:17
Alignment explanation
Indices: 36767527--36767574 Score: 75
Period size: 15 Copynumber: 3.0 Consensus size: 17
36767517 CAGGGCATTG
36767527 TGGAGCTGGTGGTGG-A
1 TGGAGCTGGTGGTGGCA
36767543 TGGAGCTGGTGGTGGCA
1 TGGAGCTGGTGGTGGCA
36767560 --GAGCTGGTGGTGGCA
1 TGGAGCTGGTGGTGGCA
36767575 GCAGCATAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.48
16 15 0.48
17 1 0.03
ACGTcount: A:0.12, C:0.10, G:0.54, T:0.23
Consensus pattern (17 bp):
TGGAGCTGGTGGTGGCA
Found at i:36767654 original size:14 final size:14
Alignment explanation
Indices: 36767635--36767695 Score: 90
Period size: 14 Copynumber: 4.5 Consensus size: 14
36767625 TTGGGCCTAT
36767635 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
*
36767649 TTGGGCC-CT-TAA
1 TTGGGCCATTGTAA
*
36767661 TTGGGCCTTTGTAA
1 TTGGGCCATTGTAA
36767675 TTGGGCCATTGTAA
1 TTGGGCCATTGTAA
36767689 TTGGGCC
1 TTGGGCC
36767696 CTGGGCCATG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 10 0.24
13 2 0.05
14 30 0.71
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (14 bp):
TTGGGCCATTGTAA
Found at i:36767672 original size:26 final size:28
Alignment explanation
Indices: 36767635--36767695 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
36767625 TTGGGCCTAT
36767635 TTGGGCCATTGTAATTGGGCC-CT-TAA
1 TTGGGCCATTGTAATTGGGCCACTGTAA
* *
36767661 TTGGGCCTTTGTAATTGGGCCATTGTAA
1 TTGGGCCATTGTAATTGGGCCACTGTAA
36767689 TTGGGCC
1 TTGGGCC
36767696 CTGGGCCATG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 20 0.65
27 1 0.03
28 10 0.32
ACGTcount: A:0.16, C:0.18, G:0.30, T:0.36
Consensus pattern (28 bp):
TTGGGCCATTGTAATTGGGCCACTGTAA
Found at i:36767742 original size:17 final size:16
Alignment explanation
Indices: 36767722--36767790 Score: 77
Period size: 17 Copynumber: 4.1 Consensus size: 16
36767712 GACTTTCTTT
36767722 TTAAATTTATAA-TAACA
1 TTAAATTTA-AATTAA-A
36767739 TTAAATTTAAATTAAA
1 TTAAATTTAAATTAAA
36767755 TTCAAATTTAAATTTAAA
1 TT-AAATTTAAA-TTAAA
* *
36767773 TTGAATTTAAAATAAA
1 TTAAATTTAAATTAAA
36767789 TT
1 TT
36767791 TAAGATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
16 11 0.23
17 29 0.62
18 7 0.15
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (16 bp):
TTAAATTTAAATTAAA
Found at i:36767748 original size:6 final size:6
Alignment explanation
Indices: 36767739--36767793 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
36767729 TATAATAACA
* *
36767739 TTAAAT TTAAA- TTAAAT TCAAAT TTAAAT TTAAA- TTGAAT TTAAA-
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
*
36767784 ATAAAT TTAA
1 TTAAAT TTAA
36767794 GATTAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 13 0.32
6 27 0.68
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (6 bp):
TTAAAT
Found at i:36767754 original size:11 final size:11
Alignment explanation
Indices: 36767738--36767800 Score: 81
Period size: 11 Copynumber: 5.5 Consensus size: 11
36767728 TTATAATAAC
36767738 ATTAAATTTAA
1 ATTAAATTTAA
*
36767749 ATTAAATTCAA
1 ATTAAATTTAA
36767760 ATTTAAATTTAA
1 A-TTAAATTTAA
*
36767772 ATTGAATTTAA
1 ATTAAATTTAA
*
36767783 AATAAATTTAA
1 ATTAAATTTAA
36767794 GATTAAA
1 -ATTAAA
36767801 ATAAATTTGA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
11 29 0.66
12 15 0.34
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.41
Consensus pattern (11 bp):
ATTAAATTTAA
Found at i:36768671 original size:10 final size:10
Alignment explanation
Indices: 36768658--36768716 Score: 55
Period size: 10 Copynumber: 5.4 Consensus size: 10
36768648 TTTTTATTTT
36768658 TATTAAATTA
1 TATTAAATTA
*
36768668 TATTAAAATA
1 TATTAAATTA
36768678 TGATTAAATTA
1 T-ATTAAATTA
*
36768689 TTTATTATCATTTA
1 --TATTA--AATTA
36768703 TATTAAATTA
1 TATTAAATTA
36768713 TATT
1 TATT
36768717 TAATAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
10 18 0.45
11 8 0.20
12 9 0.22
13 1 0.03
14 4 0.10
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (10 bp):
TATTAAATTA
Found at i:36768707 original size:45 final size:46
Alignment explanation
Indices: 36768617--36768716 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 46
36768607 ATATAAAAAT
* * * * *
36768617 AATTATATTAAGAATGTTATCAAATTATATATTTTTATTTTTATTA
1 AATTATATTAAGAATATGATCAAATTATATATTATCATTTATATTA
* *
36768663 AATTATATTAA-AATATGATTAAATTATTTATTATCATTTATATTA
1 AATTATATTAAGAATATGATCAAATTATATATTATCATTTATATTA
36768708 AATTATATT
1 AATTATATT
36768717 TAATAATAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 36 0.77
46 11 0.23
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (46 bp):
AATTATATTAAGAATATGATCAAATTATATATTATCATTTATATTA
Found at i:36769860 original size:17 final size:18
Alignment explanation
Indices: 36769828--36769861 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36769818 AAACAGCAAC
*
36769828 TATAACTGTGGTAAGTTT
1 TATAACTGTAGTAAGTTT
36769846 TATAACT-TAGTAAGTT
1 TATAACTGTAGTAAGTT
36769862 CAATAGTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (18 bp):
TATAACTGTAGTAAGTTT
Found at i:36773568 original size:53 final size:53
Alignment explanation
Indices: 36773434--36773682 Score: 338
Period size: 53 Copynumber: 4.7 Consensus size: 53
36773424 TTCGCATTTG
* *
36773434 ATAACCCATGATGACACAGAGTCATCGGACCTTTAATCCATGAT-GGATTCGT
1 ATAACTCATGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * * * * * * * *
36773486 GTATCTCACGATGTCACAAAGTTATCGGACCCTTAATCCGTAATAGGATTCAT
1 ATAACTCATGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
*
36773539 ATAACTCATGATGACACATAGTCATCGGACCTTTAATCCATGATAGGATTCAT
1 ATAACTCATGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* * *
36773592 ATAACTCACGATGACATAGAATCATCGGACCTTTAATCCATGATAGGATTCAT
1 ATAACTCATGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
* *
36773645 ATAACTCATGATGACACAGAGTCATCAGACTTTTAATC
1 ATAACTCATGATGACACAGAGTCATCGGACCTTTAATC
36773683 TTTGGCACAA
Statistics
Matches: 167, Mismatches: 29, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
52 34 0.20
53 133 0.80
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (53 bp):
ATAACTCATGATGACACAGAGTCATCGGACCTTTAATCCATGATAGGATTCAT
Found at i:36774078 original size:18 final size:16
Alignment explanation
Indices: 36774055--36774093 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
36774045 GAACCCATTC
*
36774055 TTAAATTTACTTTTAAGT
1 TTAAATTTA--TTTAAAT
36774073 TTAAATTTATTTAAAT
1 TTAAATTTATTTAAAT
36774089 TTAAA
1 TTAAA
36774094 ATAAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
18 9 0.45
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (16 bp):
TTAAATTTATTTAAAT
Found at i:36775761 original size:29 final size:30
Alignment explanation
Indices: 36775717--36776232 Score: 511
Period size: 30 Copynumber: 17.5 Consensus size: 30
36775707 CTAAATTATC
*
36775717 CAAAAATCACATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * *
36775747 CAAAAATTTCATTTTTACCATATAAACTTC-
1 CAAAAATTACATTTTTACCCT-CAAACTTCT
* * *
36775777 CAAAAATTACATTTTTACACTCGAACATC-
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * *
36775806 CAAAAAATCACATTTTAACCCCCAAACTTCT
1 C-AAAAATTACATTTTTACCCTCAAACTTCT
36775837 CAAAAATTACATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
36775867 -AAAAATTACATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * * *
36775896 TAAAAATTACGTTTTTGCCCTCGAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* *
36775926 -AAAAATCACA-TTTTACCC-CAAACTTAT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* *
36775953 CAAAAATTACATTTTTACCCCCGAACTTC-
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * *
36775982 CAAAAATCACTTTTTTACCCTCAAACTTTT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* *
36776012 TAAAAATTACATTTTTGA-CCTCGAACTTC-
1 CAAAAATTACATTTTT-ACCCTCAAACTTCT
* *
36776041 CAAAAATTATATTTTTA-CCTTAAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* *** * * *
36776070 TAAAAATTATGGTTTTGCCCCCGAACTTC-
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * *
36776099 CAAAAATCACATTTTTACCCTTAATCTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* *
36776129 CAAAAATTACATTTTTGCCCTCAAA-TTTT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
*
36776158 C-AAAATTATATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCAAACTTCT
* * * *
36776187 AAAAAATGACATTTTTACCCCTAAAACTTTT
1 CAAAAATTACATTTTTA-CCCTCAAACTTCT
*
36776218 C-AAAATTATATTTTT
1 CAAAAATTACATTTTT
36776233 GCCTGAACTC
Statistics
Matches: 394, Mismatches: 77, Indels: 30
0.79 0.15 0.06
Matches are distributed among these distances:
27 7 0.02
28 47 0.12
29 128 0.32
30 192 0.49
31 20 0.05
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.37
Consensus pattern (30 bp):
CAAAAATTACATTTTTACCCTCAAACTTCT
Found at i:36775878 original size:59 final size:59
Alignment explanation
Indices: 36775717--36776206 Score: 515
Period size: 59 Copynumber: 8.3 Consensus size: 59
36775707 CTAAATTATC
* * * * *
36775717 CAAAAATCACATTTTTACCCTCAAACTTCTCAAAAATTTCATTTTTACCATATAAACTTC-
1 CAAAAATTACATTTTTACCCTCGAACTTCT-AAAAATTACATTTTTACCCT-CAAACTTCT
* * * * * *
36775777 CAAAAATTACATTTTTACACTCGAACATCCAAAAAATCACATTTTAACCCCCAAACTTCT
1 CAAAAATTACATTTTTACCCTCGAAC-TTCTAAAAATTACATTTTTACCCTCAAACTTCT
*
36775837 CAAAAATTACATTTTTACCCTCAAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* * * * *
36775896 TAAAAATTACGTTTTTGCCCTCGAACTTCTAAAAATCACA-TTTTACCC-CAAACTTAT
1 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* * * * *
36775953 CAAAAATTACATTTTTACCCCCGAACTTCCAAAAATCACTTTTTTACCCTCAAACTTTT
1 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* * * *
36776012 TAAAAATTACATTTTTGA-CCTCGAACTTCCAAAAATTATATTTTTA-CCTTAAACTTCT
1 CAAAAATTACATTTTT-ACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* *** * * * * * *
36776070 TAAAAATTATGGTTTTGCCCCCGAACTTCCAAAAATCACATTTTTACCCTTAATCTTCT
1 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* * * * *
36776129 CAAAAATTACATTTTTGCCCTC-AAATTTTCAAAATTATATTTTTACCCTCAAACTTCT
1 CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
* *
36776187 AAAAAATGACATTTTTACCC
1 CAAAAATTACATTTTTACCC
36776207 CTAAAACTTT
Statistics
Matches: 361, Mismatches: 62, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
57 42 0.12
58 109 0.30
59 145 0.40
60 63 0.17
61 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (59 bp):
CAAAAATTACATTTTTACCCTCGAACTTCTAAAAATTACATTTTTACCCTCAAACTTCT
Found at i:36776397 original size:14 final size:14
Alignment explanation
Indices: 36776360--36776401 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
36776350 TGATTCATAA
36776360 TTCGTAT-TTTATTT
1 TTCGTATATTTA-TT
* *
36776374 TTCTTTTATTTATT
1 TTCGTATATTTATT
36776388 TTCGTATATTTATT
1 TTCGTATATTTATT
36776402 CATTCGTACT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (14 bp):
TTCGTATATTTATT
Found at i:36781790 original size:39 final size:39
Alignment explanation
Indices: 36781736--36781810 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
36781726 AAGGAGTTAG
36781736 AATTTTTTGAGGAAAAAGAAGTGGAAAAAGTATGTGTCA
1 AATTTTTTGAGGAAAAAGAAGTGGAAAAAGTATGTGTCA
*
36781775 AATTTTTTGAGGAAAAAGAAGTGGAAGAAGTATGTG
1 AATTTTTTGAGGAAAAAGAAGTGGAAAAAGTATGTG
36781811 CCTCCGAAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.43, C:0.01, G:0.28, T:0.28
Consensus pattern (39 bp):
AATTTTTTGAGGAAAAAGAAGTGGAAAAAGTATGTGTCA
Found at i:36785947 original size:23 final size:23
Alignment explanation
Indices: 36785920--36786061 Score: 144
Period size: 23 Copynumber: 6.1 Consensus size: 23
36785910 TGGGTAACAG
*
36785920 AGGGCACACAAAGTGCTAATCAG
1 AGGGCACACAAAGTGCTAATCAA
36785943 AGGGCACACAAAGTGCTAATAACAA
1 AGGGCACACAAAGTGCTAAT--CAA
* *
36785968 AGGGCACACATAGTGCTGAA-CAG
1 AGGGCACACAAAGTGCT-AATCAA
*
36785991 AGGGCAAACACAA-TGCTAATCAA
1 AGGGCACACA-AAGTGCTAATCAA
* * * *
36786014 AGAGTACGCACAGTGCTAATCAA
1 AGGGCACACAAAGTGCTAATCAA
* *
36786037 AGAGCACACACAGTGCTAATCAA
1 AGGGCACACAAAGTGCTAATCAA
36786060 AG
1 AG
36786062 AGCGCGCTAG
Statistics
Matches: 100, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
22 3 0.03
23 76 0.76
24 1 0.01
25 18 0.18
26 2 0.02
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (23 bp):
AGGGCACACAAAGTGCTAATCAA
Found at i:36785966 original size:48 final size:48
Alignment explanation
Indices: 36785892--36786056 Score: 144
Period size: 48 Copynumber: 3.5 Consensus size: 48
36785882 AAGTACTTAA
* **
36785892 CAGAAGGCACA-AAAGTGCTGGGTAACAGAGGGCACACAAAGTGCTAAT
1 CAGAGGGCACACAAAGTGCT-AATAACAGAGGGCACACAAAGTGCTAAT
* *
36785940 CAGAGGGCACACAAAGTGCTAATAACAAAGGGCACACATAGTGCTGAA-
1 CAGAGGGCACACAAAGTGCTAATAACAGAGGGCACACAAAGTGCT-AAT
* * * *
36785988 CAGAGGGCAAACACAA-TGCTAATCAA-AGA--GTACGCACAGTGCTAAT
1 CAGAGGGCACACA-AAGTGCTAAT-AACAGAGGGCACACAAAGTGCTAAT
* * *
36786034 CAAAGAGCACACACAGTGCTAAT
1 CAGAGGGCACACAAAGTGCTAAT
36786057 CAAAGAGCGC
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 28 0.29
48 52 0.54
49 14 0.14
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.13
Consensus pattern (48 bp):
CAGAGGGCACACAAAGTGCTAATAACAGAGGGCACACAAAGTGCTAAT
Found at i:36786009 original size:71 final size:69
Alignment explanation
Indices: 36785915--36786053 Score: 172
Period size: 71 Copynumber: 2.0 Consensus size: 69
36785905 AGTGCTGGGT
* * * * *
36785915 AACAGAGGGCACACAAAGTGCTAATCAGAGGGCACACAAAGTGCTAATAACAAAGGGCACACATA
1 AACAGAGGGCAAACAAAGTGCTAATCAAAGAGCACACAAAGTGCTAAT--CAAAGAGCACACACA
36785980 GTGCTG
64 GTGCTG
* * *
36785986 AACAGAGGGCAAACACAA-TGCTAATCAAAGAGTACGCACAGTGCTAATCAAAGAGCACACACAG
1 AACAGAGGGCAAACA-AAGTGCTAATCAAAGAGCACACAAAGTGCTAATCAAAGAGCACACACAG
36786050 TGCT
65 TGCT
36786054 AATCAAAGAG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
69 18 0.31
71 39 0.66
72 2 0.03
ACGTcount: A:0.42, C:0.22, G:0.23, T:0.13
Consensus pattern (69 bp):
AACAGAGGGCAAACAAAGTGCTAATCAAAGAGCACACAAAGTGCTAATCAAAGAGCACACACAGT
GCTG
Found at i:36786165 original size:24 final size:26
Alignment explanation
Indices: 36786127--36786182 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 26
36786117 TCTACATGGG
36786127 CATAATCTCTCATAT-TCATCATTTCT
1 CATAATCTCTCATATATCA-CATTTCT
*
36786153 CATAAT-T-TCATATATCACATTT-A
1 CATAATCTCTCATATATCACATTTCT
36786176 CATAATC
1 CATAATC
36786183 ATGTGTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 6 0.22
24 11 0.41
25 4 0.15
26 6 0.22
ACGTcount: A:0.34, C:0.23, G:0.00, T:0.43
Consensus pattern (26 bp):
CATAATCTCTCATATATCACATTTCT
Found at i:36786640 original size:10 final size:11
Alignment explanation
Indices: 36786622--36786651 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
36786612 TCAGTCTCTA
36786622 ATAATTTTTAT
1 ATAATTTTTAT
36786633 AT-ATTTTTAT
1 ATAATTTTTAT
36786643 ATAATTTTT
1 ATAATTTTT
36786652 CAAGGTCAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATAATTTTTAT
Found at i:36790918 original size:39 final size:39
Alignment explanation
Indices: 36790873--36792254 Score: 147
Period size: 39 Copynumber: 35.6 Consensus size: 39
36790863 TTCTGATCCT
* * *
36790873 TTACCCCGAGCATGAGGTAGATCACCATCAGCTAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * *
36790912 TTACCCCAAGCTTGGGGCAGATCATCATCAACAAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * * *
36790951 TTACCCCGA-CTTG-GGCAGACTGTAACCAT--TC-GATCTT
1 TTACCCCGAGCATGAGGCAGA---TCACCATCAACAAATCTC
* * * * * *
36790988 TTACCCTGAGC-TCGGGGCAAATCACTATTAGCAAATCTC
1 TTACCCCGAGCAT-GAGGCAGATCACCATCAACAAATCTC
* * * * * *
36791027 TTACCCCGATCATGGGGCAAATTTTAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA--TCA-CCATCAACAAATCTC
** * * * * * * *
36791066 TTACCCTAAGCTTGGGGCAGATCGCCATTAGCCAATATC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * *
36791105 TTACCCCGAGCCTG-GGCAGATTGTATCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
* * * * *
36791143 TTACCCCAAGCTTGAGGCAGATCACCATTAGCCAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * * * *
36791182 TTACCTCGAGCCTGGGGTAGATTGCAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
* * *
36791221 TTACCCCGAGC-TTAGGGCAGATCAACATCAACTAATCTC
1 TTACCCCGAGCATGA-GGCAGATCACCATCAACAAATCTC
* * * * *
36791260 TT-CCCCGATCATGGGGTAAATTGCAGCCATC--C-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
* * *
36791298 TTACCCCGAGCCT-AGGGCAGATCATCATCAGA-AAAACTC
1 TTACCCCGAGCATGA-GGCAGATCACCATCA-ACAAATCTC
* * * * * *
36791337 TTACCCCGAGCCT-AGACAGATTGTAACCAT--TC-GATCTT
1 TTACCCCGAGCATGAGGCAGA---TCACCATCAACAAATCTC
** * * * *
36791375 TTACCCCGAGCCCGGGGTAAATCACCATCAGCAAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
** * * * * *
36791414 TTACCCCGATTATGGGGTAAATTGCAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
* ** * * * *
36791453 TTACTCTAAGCTTGGGGCAGATCACCATCAGCCAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * ** * *
36791492 TTACCCCGAGCTTGAGGCAGGT-TGCAGTCATTC-GATCTC
1 TTACCCCGAGCATGAGGCAGATCACCA-TCA-ACAAATCTC
* * * * *
36791531 TTACCCCAAGC-TTAGGGCAGATCACCATCAGCCAATCTT
1 TTACCCCGAGCATGA-GGCAGATCACCATCAACAAATCTC
* * * * *
36791570 TTATCCCAAGCCT-AGGGCAGATTACAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGA-GGCAGA-T-CA-CCATCAACAAATCTC
* * * *
36791609 TTACCTCGAGCCT-AGGGCAGATCAACATCAACCAATCTC
1 TTACCCCGAGCATGA-GGCAGATCACCATCAACAAATCTC
* *
36791648 TTACCCCGATCAT-AGGGCAGATTACAGCCATC--C-GATCTC
1 TTACCCCGAGCATGA-GGCAGA-T-CA-CCATCAACAAATCTC
* * * * * * *
36791687 TTGCCCCGAGCTTGGGGTAAATCATCATCAGCAAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * *
36791726 TTACCCCGAGCTTG-GGATAGATCACCATCAAAAAATCTC
1 TTACCCCGAGCATGAGG-CAGATCACCATCAACAAATCTC
* * * *
36791765 TTACCTCGATCATG-GTACAGATTACAGCCATC--C-GATCTC
1 TTACCCCGAGCATGAG-GCAGA-T-CA-CCATCAACAAATCTC
* * * * **
36791804 TTATCCCGAGCCT-AGGGCAAATCATCATCAGTAAATCTC
1 TTACCCCGAGCATGA-GGCAGATCACCATCAACAAATCTC
* * * * * *
36791843 TTACCCCGAGCTTGAGGCATATTTTAACCAT--TC-GATCTT
1 TTACCCCGAGCATGAGGCAGA---TCACCATCAACAAATCTC
** * **
36791882 TTACCCCGAGCCCGGGGCAGATCACCATCAGTAAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * * *
36791921 TTACCCCGATCGTGAGACAGATTGCAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
** * * * *
36791960 TTACCCTAAGC-TTAGGACAAATCACCATCAGCCAATCTC
1 TTACCCCGAGCATGAGG-CAGATCACCATCAACAAATCTC
* * ** * *
36791999 TTACCCCGAGCCTGGGGCAGAT-TGCAGTCATTC-GATCTC
1 TTACCCCGAGCATGAGGCAGATCACCA-TCA-ACAAATCTC
* * * * *
36792038 TTACCTCAAGCTTGGGGCAGATCACCATCAACCAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* * * *
36792077 TTACCCCGAGCCTGAGGTAGATTACAGCCAT--TC-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
* * * * * *
36792116 TTACCTCGAGCCT-AGGACAGATCAACATTAGCCAATCTC
1 TTACCCCGAGCATGAGG-CAGATCACCATCAACAAATCTC
* * * *
36792155 TTACCTCGATCATGGGGCAGATTGCAGCCATC--C-GATCTC
1 TTACCCCGAGCATGAGGCAGA-T-CA-CCATCAACAAATCTC
** * * * *
36792194 TTACCCTAAGCTTGAGGCAGATCATCATCAGCCAATCTC
1 TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
* *
36792233 TTACCCCGATCATGGGGCAGAT
1 TTACCCCGAGCATGAGGCAGAT
36792255 TGTAGTCATT
Statistics
Matches: 975, Mismatches: 252, Indels: 232
0.67 0.17 0.16
Matches are distributed among these distances:
36 58 0.06
37 39 0.04
38 105 0.11
39 665 0.68
40 37 0.04
41 31 0.03
42 40 0.04
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (39 bp):
TTACCCCGAGCATGAGGCAGATCACCATCAACAAATCTC
Found at i:36791072 original size:78 final size:78
Alignment explanation
Indices: 36790907--36791741 Score: 807
Period size: 78 Copynumber: 10.8 Consensus size: 78
36790897 CCATCAGCTA
* * * *
36790907 ATCTCTTACCCCAAGCTTGGGGCAGATCATCATCAACAAATCTCTTACCCCGA-C-TTGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* * *
36790970 CTGTAACCATTCG
66 TTGCAGCCATTCG
* * * * * * * *
36790983 ATCTTTTACCCTGAGCTCGGGGCAAATCACTATTAGCAAATCTCTTACCCCGATCATGGGGCAAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
**
36791048 TTTTAGCCATTCG
66 TTGCAGCCATTCG
** * * * * *
36791061 ATCTCTTACCCTAAGCTTGGGGCAGATCGCCATTAGCCAATATCTTACCCCGAGCCT-GGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
36791125 TTGTATCCATTCG
66 TTGCAGCCATTCG
* * * * * * *
36791138 ATCTCTTACCCCAAGCTTGAGGCAGATCACCATTAGCCAATCTCTTACCTCGAGCCTGGGGTAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
36791203 TTGCAGCCATTCG
66 TTGCAGCCATTCG
* * * * * * *
36791216 ATCTCTTACCCCGAGCTTAGGGCAGATCAACATCAACTAATCTCTT-CCCCGATCATGGGGTAAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
*
36791280 TTGCAGCCATCCG
66 TTGCAGCCATTCG
* * * * * * * *
36791293 ATCTCTTACCCCGAGCCTAGGGCAGATCATCATCAGAAAAACTCTTACCCCGAGCCT-AGACAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
36791357 TTGTAACCATTCG
66 TTGCAGCCATTCG
* ** * * ** * *
36791370 ATCTTTTACCCCGAGCCCGGGGTAAATCACCATCAGCAAATCTCTTACCCCGATTATGGGGTAAA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
36791435 TTGCAGCCATTCG
66 TTGCAGCCATTCG
* ** * * * *
36791448 ATCTCTTACTCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGAGCTTGAGGCAGG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
*
36791513 TTGCAGTCATTCG
66 TTGCAGCCATTCG
* * * * * * * *
36791526 ATCTCTTACCCCAAGCTTAGGGCAGATCACCATCAGCCAATCTTTTATCCCAAGCCTAGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
*
36791591 TTACAGCCATTCG
66 TTGCAGCCATTCG
* * * * * * * *
36791604 ATCTCTTACCTCGAGCCTAGGGCAGATCAACATCAACCAATCTCTTACCCCGATCATAGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* *
36791669 TTACAGCCATCCG
66 TTGCAGCCATTCG
* * * * *
36791682 ATCTCTTGCCCCGAGCTTGGGGTAAATCATCATCAGCAAATCTCTTACCCCGAGCTTGGG
1 ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGG
36791742 ATAGATCACC
Statistics
Matches: 623, Mismatches: 131, Indels: 8
0.82 0.17 0.01
Matches are distributed among these distances:
76 44 0.07
77 195 0.31
78 384 0.62
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (78 bp):
ATCTCTTACCCCGAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
TTGCAGCCATTCG
Found at i:36791186 original size:155 final size:156
Alignment explanation
Indices: 36790907--36791741 Score: 793
Period size: 155 Copynumber: 5.4 Consensus size: 156
36790897 CCATCAGCTA
* * *
36790907 ATCTCTTACCCCAAGCTTGGGGCAGATCATCATCAACAAATCTCTTACCCCGA-C-TTGGGCAGA
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* * * * * * * * * * *
36790970 CTGTAACCATTCGATCTTTTACCCTGAGCTCGGGGCAAATCACTATTAGCAAATCTCTTACCCCG
66 TTGCAGCCATTCGATCTCTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCG
* * **
36791035 ATCATGGGGCAAATTTTAGCCATTCG
131 AGCATGGGGCAGATTGCAGCCATTCG
* * * * * *
36791061 ATCTCTTACCCTAAGCTTGGGGCAGATCGCCATTAGCCAATATCTTACCCCGAGCCT-GGGCAGA
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* * * * *
36791125 TTGTATCCATTCGATCTCTTACCCCAAGCTTGAGGCAGATCACCATTAGCCAATCTCTTACCTCG
66 TTGCAGCCATTCGATCTCTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCG
* *
36791190 AGCCTGGGGTAGATTGCAGCCATTCG
131 AGCATGGGGCAGATTGCAGCCATTCG
* * * * * * * *
36791216 ATCTCTTACCCCGAGCTTAGGGCAGATCAACATCAACTAATCTCTT-CCCCGATCATGGGGTAAA
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* * * ** *
36791280 TTGCAGCCATCCGATCTCTTACCCCGAGCCT-AGGGCAGATCATCATCAGAAAAACTCTTACCCC
66 TTGCAGCCATTCGATCTCTTACCCCGAGCTTGA-GGCAGATCACCATCAGCCAATCTCTTACCCC
* * * * *
36791344 GAGCCT-AGACAGATTGTAACCATTCG
130 GAGCATGGGGCAGATTGCAGCCATTCG
* * ** * * ** * *
36791370 ATCTTTTACCCCGAGCCCGGGGTAAATCACCATCAGCAAATCTCTTACCCCGATTATGGGGTAAA
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* ** *
36791435 TTGCAGCCATTCGATCTCTTACTCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCG
66 TTGCAGCCATTCGATCTCTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCG
* * * *
36791500 AGCTTGAGGCAGGTTGCAGTCATTCG
131 AGCATGGGGCAGATTGCAGCCATTCG
* * * * * * *
36791526 ATCTCTTACCCCAAGCTTAGGGCAGATCACCATCAGCCAATCTTTTATCCCAAGCCTAGGGCAGA
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
* * * * *
36791591 TTACAGCCATTCGATCTCTTACCTCGAGCCT-AGGGCAGATCAACATCAACCAATCTCTTACCCC
66 TTGCAGCCATTCGATCTCTTACCCCGAGCTTGA-GGCAGATCACCATCAGCCAATCTCTTACCCC
* * * *
36791655 GATCATAGGGCAGATTACAGCCATCCG
130 GAGCATGGGGCAGATTGCAGCCATTCG
* * * * * *
36791682 ATCTCTTGCCCCGAGCTTGGGGTAAATCATCATCAGCAAATCTCTTACCCCGAGCTTGGG
1 ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGG
36791742 ATAGATCACC
Statistics
Matches: 548, Mismatches: 125, Indels: 14
0.80 0.18 0.02
Matches are distributed among these distances:
154 107 0.20
155 256 0.47
156 185 0.34
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (156 bp):
ATCTCTTACCCCAAGCTTGGGGCAGATCACCATCAGCAAATCTCTTACCCCGAGCATGGGGCAGA
TTGCAGCCATTCGATCTCTTACCCCGAGCTTGAGGCAGATCACCATCAGCCAATCTCTTACCCCG
AGCATGGGGCAGATTGCAGCCATTCG
Found at i:36791803 original size:78 final size:77
Alignment explanation
Indices: 36791721--36792267 Score: 504
Period size: 78 Copynumber: 7.0 Consensus size: 77
36791711 TCATCAGCAA
* *** * *
36791721 ATCTCTTACCCCGAGCTTGGGATAGATCACCATCAAAAAATCTCTTACCTCGATCATGGTACAGA
1 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATGG-GCAGA
* *
36791786 TTACAGCCATCCG
65 TTGCAGCCATTCG
* * * * ** * * *
36791799 ATCTCTTATCCCGAGCCTAGGG-CAAATCATCATCAGTAAATCTCTTACCCCGAGCTTGAGGCAT
1 ATCTCTTACCCCGAG-CTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATG-GGCAG
** *
36791863 ATTTTAACCATTCG
64 ATTGCAGCCATTCG
* ** * ** * *
36791877 ATCTTTTACCCCGAGCCCGGGGCAGATCACCATCAGTAAATCTCTTACCCCGATCGTGAGACAGA
1 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATG-GGCAGA
36791942 TTGCAGCCATTCG
65 TTGCAGCCATTCG
** * * * *
36791955 ATCTCTTACCCTAAGCTTAGGACAAATCACCATCAGCCAATCTCTTACCCCGAGCCTGGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCAT-GGGCAGA
*
36792020 TTGCAGTCATTCG
65 TTGCAGCCATTCG
* * * * * * *
36792033 ATCTCTTACCTCAAGCTTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGTAGA
1 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATG-GGCAGA
*
36792098 TTACAGCCATTCG
65 TTGCAGCCATTCG
* * * * * *
36792111 ATCTCTTACCTCGAGCCTAGGACAGATCAACATTAGCCAATCTCTTACCTCGATCATGGGGCAGA
1 ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCAT-GGGCAGA
*
36792176 TTGCAGCCATCCG
65 TTGCAGCCATTCG
** *
36792189 ATCTCTTACCCTAAGCTTGAGG-CAGATCATCATCAGCCAATCTCTTACCCCGATCATGGGGCAG
1 ATCTCTTACCCCGAGCTTG-GGACAGATCACCATCAGCCAATCTCTTACCCCGATCAT-GGGCAG
* *
36792253 ATTGTAGTCATTCG
64 ATTGCAGCCATTCG
36792267 A
1 A
36792268 AGAAATAAAG
Statistics
Matches: 386, Mismatches: 76, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
77 5 0.01
78 371 0.96
79 10 0.03
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (77 bp):
ATCTCTTACCCCGAGCTTGGGACAGATCACCATCAGCCAATCTCTTACCCCGATCATGGGCAGAT
TGCAGCCATTCG
Found at i:36791854 original size:117 final size:116
Alignment explanation
Indices: 36791604--36791861 Score: 347
Period size: 117 Copynumber: 2.2 Consensus size: 116
36791594 CAGCCATTCG
* * ** *
36791604 ATCTCTTACCTCGAGCCTAGGGCAGATCAACATCAACCAATCTCTTACCCCGATCATAGGGCAGA
1 ATCTCTTACCCCGAG-CTTGGGCAGATCAACATCAAAAAATCTCTTACCCCGATCATAGGACAGA
* * * *
36791669 TTACAGCCATCCGATCTCTTGCCCCGAGCTTGGGGTAAATCATCATCAGCAA
65 TTACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAAATCATCATCAGCAA
* * *
36791721 ATCTCTTACCCCGAGCTTGGGATAGATCACCATCAAAAAATCTCTTACCTCGATCAT-GGTACAG
1 ATCTCTTACCCCGAGCTTGGG-CAGATCAACATCAAAAAATCTCTTACCCCGATCATAGG-ACAG
* *
36791785 ATTACAGCCATCCGATCTCTTATCCCGAGCCTAGGGCAAATCATCATCAGTAA
64 ATTACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAAATCATCATCAGCAA
36791838 ATCTCTTACCCCGAGCTTGAGGCA
1 ATCTCTTACCCCGAGCTTG-GGCA
36791862 TATTTTAACC
Statistics
Matches: 123, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
116 7 0.06
117 114 0.93
118 2 0.02
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (116 bp):
ATCTCTTACCCCGAGCTTGGGCAGATCAACATCAAAAAATCTCTTACCCCGATCATAGGACAGAT
TACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAAATCATCATCAGCAA
Found at i:36791903 original size:117 final size:114
Alignment explanation
Indices: 36791642--36791903 Score: 274
Period size: 117 Copynumber: 2.2 Consensus size: 114
36791632 AACATCAACC
* ** * * * *
36791642 AATCTCTTACCCCGATCATAGGGCAGATTACAGCCATCCGATCTCTTGCCCCGAGCTTGGGGTAA
1 AATCTCTTACCCCGAGCACGGGGCAGATTACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAA
*
36791707 ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGATAGATCACCATCAAAA
66 ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGATAGATAACCATC---A
* * * ** *
36791759 AATCTCTTACCTCGATCATGGTACAGATTACAGCCATCCGATCTCTTATCCCGAGCCTAGGGCAA
1 AATCTCTTACCCCGAGCACGGGGCAGATTACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAA
* **
36791824 ATCATCATCAGTAAATCTCTTACCCCGAGCTTGAGGCATATTTTAACCATTC-
66 ATCATCATCAGCAAATCTCTTACCCCGAGCTTG-GG-ATA-GATAACCA-TCA
* * *
36791876 GATCTTTTACCCCGAGCCCGGGGCAGAT
1 AATCTCTTACCCCGAGCACGGGGCAGAT
36791904 CACCATCAGT
Statistics
Matches: 120, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
117 108 0.90
118 2 0.02
119 3 0.03
120 5 0.04
121 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (114 bp):
AATCTCTTACCCCGAGCACGGGGCAGATTACAGCCATCCGATCTCTTACCCCGAGCCTAGGGCAA
ATCATCATCAGCAAATCTCTTACCCCGAGCTTGGGATAGATAACCATCA
Found at i:36792267 original size:156 final size:155
Alignment explanation
Indices: 36791721--36792255 Score: 588
Period size: 156 Copynumber: 3.4 Consensus size: 155
36791711 TCATCAGCAA
** ** *** *
36791721 ATCTCTTACCCCGAGCTTGGGATAGATCACCATCAAAAAATCTCTTACCTCGATCATG-GTACAG
1 ATCTCTTACCCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAG-ACAG
* * * **
36791785 ATTACAGCCATCCGATCTCTTATCCCGAGCCTAGGGCAAATCATCATCAGTAAATCTCTTACCCC
65 ATTACAGCCATTCGATCTCTTA-CCCGAGCCTAGGACAAATCAACATCAGCCAATCTCTTACCCC
* * * ** *
36791850 GAGCTTGAGGCATATTTTAACCATTCG
129 GAGCATGGGGCAGATTGCAGCCATTCG
* ** ** ** *
36791877 ATCTTTTACCCCGAGCCCGGGGCAGATCACCATCAGTAAATCTCTTACCCCGATCGTGAGACAGA
1 ATCTCTTACCCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGACAGA
* * * *
36791942 TTGCAGCCATTCGATCTCTTACCCTAAGCTTAGGACAAATCACCATCAGCCAATCTCTTACCCCG
66 TTACAGCCATTCGATCTCTTACCC-GAGCCTAGGACAAATCAACATCAGCCAATCTCTTACCCCG
* *
36792007 AGCCTGGGGCAGATTGCAGTCATTCG
130 AGCATGGGGCAGATTGCAGCCATTCG
* * * **
36792033 ATCTCTTA-CCTCAAGCTTGGGGCAGATCACCATCAACCAATCTCTTACCCCGAGCCTGAGGTAG
1 ATCTCTTACCCT-AAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGACAG
* * *
36792097 ATTACAGCCATTCGATCTCTTACCTCGAGCCTAGGACAGATCAACATTAGCCAATCTCTTACCTC
65 ATTACAGCCATTCGATCTCTTACC-CGAGCCTAGGACAAATCAACATCAGCCAATCTCTTACCCC
* *
36792162 GATCATGGGGCAGATTGCAGCCATCCG
129 GAGCATGGGGCAGATTGCAGCCATTCG
* * * *
36792189 ATCTCTTACCCTAAGCTTGAGGCAGATCATCATCAGCCAATCTCTTACCCCGATCATGGGGCAGA
1 ATCTCTTACCCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGACAGA
36792254 TT
66 TT
36792256 GTAGTCATTC
Statistics
Matches: 320, Mismatches: 54, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
155 5 0.02
156 310 0.97
157 5 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (155 bp):
ATCTCTTACCCTAAGCTTGGGGCAGATCACCATCAGCCAATCTCTTACCCCGATCATGAGACAGA
TTACAGCCATTCGATCTCTTACCCGAGCCTAGGACAAATCAACATCAGCCAATCTCTTACCCCGA
GCATGGGGCAGATTGCAGCCATTCG
Found at i:36792691 original size:17 final size:17
Alignment explanation
Indices: 36792652--36792689 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
36792642 GAACCCATTC
*
36792652 TTAAATTTACTTTAAGT
1 TTAAATTTACTTTAAAT
36792669 TTAAATTTA-TTTAAAT
1 TTAAATTTACTTTAAAT
36792685 TTAAA
1 TTAAA
36792690 ATAAATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAATTTACTTTAAAT
Found at i:36793400 original size:27 final size:26
Alignment explanation
Indices: 36793348--36793395 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 26
36793338 TTTTCAAACG
36793348 TTTTATAATAAATATATAATAAATAA
1 TTTTATAATAAATATATAATAAATAA
36793374 TTTTAT--T-AATA-ATAATAAATAA
1 TTTTATAATAAATATATAATAAATAA
36793396 AATAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 11 0.50
23 4 0.18
24 1 0.05
26 6 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
TTTTATAATAAATATATAATAAATAA
Found at i:36794374 original size:29 final size:29
Alignment explanation
Indices: 36794312--36794662 Score: 326
Period size: 30 Copynumber: 12.0 Consensus size: 29
36794302 CTCAAAAGGT
* *
36794312 CCCTGAACTGTCT-AAAAATCACATTTTTA
1 CCCTAAACT-TCTCAAAAATTACATTTTTA
* *
36794341 CCCCTAGACTTCTCAAAAATTACATTTTTT
1 -CCCTAAACTTCTCAAAAATTACATTTTTA
36794371 CCCTAAACTT-TCAAAAATTACATTTTTA
1 CCCTAAACTTCTCAAAAATTACATTTTTA
* * * *
36794399 CCCCCAAACTTC-CAAAAAAATATATTTTAA
1 -CCCTAAACTTCTC-AAAAATTACATTTTTA
* *
36794429 CCCTTGAACTTCTTAAAAATTACATTTTTA
1 CCC-TAAACTTCTCAAAAATTACATTTTTA
*
36794459 CCCTTAAACTTC-CAAAAATCACATTTTTA
1 CCC-TAAACTTCTCAAAAATTACATTTTTA
36794488 CCCTTAAACTTCTCAAAAATTACATTTTTA
1 CCC-TAAACTTCTCAAAAATTACATTTTTA
* *
36794518 CCCTCGAACTTC-CAAAAATCACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
* *
36794547 CCCTCAATCTTATCAAAAATTACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
* *
36794577 CCC-ACGAA-TT-TCCAAAATTA-TTTTTTA
1 CCCTA--AACTTCTCAAAAATTACATTTTTA
* *
36794604 CCCTCGAACTTCTCAAAAATGACATTTTTA
1 CCCT-AAACTTCTCAAAAATTACATTTTTA
*
36794634 CCCCTAAAACTTTTC-AAAATTACATTTTT
1 -CCCT-AAACTTCTCAAAAATTACATTTTT
36794663 GCCTCGAACT
Statistics
Matches: 267, Mismatches: 37, Indels: 34
0.79 0.11 0.10
Matches are distributed among these distances:
27 11 0.04
28 29 0.11
29 88 0.33
30 128 0.48
31 11 0.04
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (29 bp):
CCCTAAACTTCTCAAAAATTACATTTTTA
Found at i:36794491 original size:59 final size:59
Alignment explanation
Indices: 36794315--36794637 Score: 345
Period size: 59 Copynumber: 5.5 Consensus size: 59
36794305 AAAAGGTCCC
* * * * *
36794315 TGAACTGTCT-AAAAATCACATTTTTACCCCTAGACTTCTCAAAAATTACATTTTTTCCC-
1 TGAACT-TCTCAAAAATTACATTTTTACCCCCAAACTTC-CAAAAATCACATTTTTACCCT
* * *
36794374 TAAACTT-TCAAAAATTACATTTTTACCCCCAAACTTCCAAAAAAAT-ATATTTTAACCCT
1 TGAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCC--AAAAATCACATTTTTACCCT
* **
36794433 TGAACTTCTTAAAAATTACATTTTTACCCTTAAACTTCCAAAAATCACATTTTTACCCT
1 TGAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATCACATTTTTACCCT
* * *
36794492 TAAACTTCTCAAAAATTACATTTTTACCCTCGAACTTCCAAAAATCACATTTTTACCC-
1 TGAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATCACATTTTTACCCT
* * * * * * *
36794550 TCAATCTTATCAAAAATTACATTTTTACCCACGAATTTCC-AAAATTA-TTTTTTACCCT
1 TGAA-CTTCTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATCACATTTTTACCCT
* *
36794608 CGAACTTCTCAAAAATGACATTTTTACCCC
1 TGAACTTCTCAAAAATTACATTTTTACCCC
36794638 TAAAACTTTT
Statistics
Matches: 228, Mismatches: 28, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
57 34 0.15
58 52 0.23
59 114 0.50
60 28 0.12
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.37
Consensus pattern (59 bp):
TGAACTTCTCAAAAATTACATTTTTACCCCCAAACTTCCAAAAATCACATTTTTACCCT
Found at i:36794823 original size:14 final size:15
Alignment explanation
Indices: 36794788--36794829 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
36794778 TGATTCATAA
36794788 TTCGTAT-TTTATTT
1 TTCGTATATTTATTT
*
36794802 TTCTTATATTTATTT
1 TTCGTATATTTATTT
36794817 TT-GTATATTTATT
1 TTCGTATATTTATT
36794830 CATTCGTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 16 0.64
15 9 0.36
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (15 bp):
TTCGTATATTTATTT
Found at i:36802129 original size:22 final size:22
Alignment explanation
Indices: 36802101--36802157 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
36802091 TCCATCTCTC
36802101 ATTTCTAATCCCTAAACCCCAA
1 ATTTCTAATCCCTAAACCCCAA
*
36802123 ATTTCTAATCCCTAAACCCTAA
1 ATTTCTAATCCCTAAACCCCAA
36802145 ATTTCTAATCCCT
1 ATTTCTAATCCCT
36802158 TTCTCCTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (22 bp):
ATTTCTAATCCCTAAACCCCAA
Found at i:36804226 original size:279 final size:279
Alignment explanation
Indices: 36803724--36804282 Score: 1073
Period size: 279 Copynumber: 2.0 Consensus size: 279
36803714 AACAAAATAG
36803724 CTTAGAGGACATACATAGCCTAGTAGTATCAAGAATTGGTAGTTTGTATTTGTTTGCTATTTTTC
1 CTTAGAGGACATACATAGCCTAGTAGTATCAAGAATTGGTAGTTTGTATTTGTTTGCTATTTTTC
36803789 TCTTTCTGTTTTATGAAGTACTTCCATGTCCAATGCTAGAATGGTGACATCCATTTTTGTGTGAA
66 TCTTTCTGTTTTATGAAGTACTTCCATGTCCAATGCTAGAATGGTGACATCCATTTTTGTGTGAA
36803854 GTTTTGCATTGACTTAGCATTATGGCTTATATAGTGTAAATTTCAACAATCTCATTGTTGATCAA
131 GTTTTGCATTGACTTAGCATTATGGCTTATATAGTGTAAATTTCAACAATCTCATTGTTGATCAA
36803919 TTGTTTAAAACTCATCTCCTGCAGCATTGATTGGAAACTAGGAAAGTAAGGGTAGTAGTTAGTTG
196 TTGTTTAAAACTCATCTCCTGCAGCATTGATTGGAAACTAGGAAAGTAAGGGTAGTAGTTAGTTG
36803984 ATTAGGTTTGTGAAAACCA
261 ATTAGGTTTGTGAAAACCA
* *
36804003 CTTAGAGGACGTACATAGCCTAGTAGTATCAAGAATTGGTAGTTTGTATTTGTTTGTTATTTTTC
1 CTTAGAGGACATACATAGCCTAGTAGTATCAAGAATTGGTAGTTTGTATTTGTTTGCTATTTTTC
*
36804068 TCTTTCTGTTTTCTGAAGTACTTCCATGTCCAATGCTAGAATGGTGACATCCATTTTTGTGTGAA
66 TCTTTCTGTTTTATGAAGTACTTCCATGTCCAATGCTAGAATGGTGACATCCATTTTTGTGTGAA
*
36804133 GTTTTGCATTGACTTAGCATTATGGCTTATATAGTGTAAATTTCAACAATCTCATTGTTGATCCA
131 GTTTTGCATTGACTTAGCATTATGGCTTATATAGTGTAAATTTCAACAATCTCATTGTTGATCAA
*
36804198 TTGTTTAAAACTCATCTCCTGTAGCATTGATTGGAAACTAGGAAAGTAAGGGTAGTAGTTAGTTG
196 TTGTTTAAAACTCATCTCCTGCAGCATTGATTGGAAACTAGGAAAGTAAGGGTAGTAGTTAGTTG
36804263 ATTAGGTTTGTGAAAACCA
261 ATTAGGTTTGTGAAAACCA
36804282 C
1 C
36804283 ATAGGACATA
Statistics
Matches: 275, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
279 275 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (279 bp):
CTTAGAGGACATACATAGCCTAGTAGTATCAAGAATTGGTAGTTTGTATTTGTTTGCTATTTTTC
TCTTTCTGTTTTATGAAGTACTTCCATGTCCAATGCTAGAATGGTGACATCCATTTTTGTGTGAA
GTTTTGCATTGACTTAGCATTATGGCTTATATAGTGTAAATTTCAACAATCTCATTGTTGATCAA
TTGTTTAAAACTCATCTCCTGCAGCATTGATTGGAAACTAGGAAAGTAAGGGTAGTAGTTAGTTG
ATTAGGTTTGTGAAAACCA
Found at i:36804632 original size:12 final size:12
Alignment explanation
Indices: 36804615--36804639 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36804605 AAGGGAATAC
36804615 AAATATTTAATT
1 AAATATTTAATT
36804627 AAATATTTAATT
1 AAATATTTAATT
36804639 A
1 A
36804640 TTAAAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
AAATATTTAATT
Found at i:36804663 original size:26 final size:26
Alignment explanation
Indices: 36804627--36804693 Score: 125
Period size: 26 Copynumber: 2.6 Consensus size: 26
36804617 ATATTTAATT
36804627 AAATATTTAATTATTAAAAACAACCC
1 AAATATTTAATTATTAAAAACAACCC
36804653 AAATATTTAATTATTAAAAACAACCC
1 AAATATTTAATTATTAAAAACAACCC
*
36804679 AAATATTTCATTATT
1 AAATATTTAATTATT
36804694 TAAATCTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (26 bp):
AAATATTTAATTATTAAAAACAACCC
Found at i:36810548 original size:15 final size:16
Alignment explanation
Indices: 36810516--36810548 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
36810506 ATCCACCATC
36810516 TTAGACTTTTGATTTT
1 TTAGACTTTTGATTTT
36810532 TTAGACTTTTG-TTTT
1 TTAGACTTTTGATTTT
36810547 TT
1 TT
36810549 CTTATTGCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.15, C:0.06, G:0.12, T:0.67
Consensus pattern (16 bp):
TTAGACTTTTGATTTT
Found at i:36810801 original size:43 final size:43
Alignment explanation
Indices: 36810754--36810842 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 43
36810744 GTTAGCGACA
* * *
36810754 TTTGTG-GTAAAAATGCCGCTAAATACCATGTTTTATAGCGGCG
1 TTTGTGAG-AAAAACGCCGCTAAAGACCATGTTCTATAGCGGCG
* * *
36810797 TTTGTGAGAAAAGCGCCGCTAAAGATCATGTTCTATAGCTGCG
1 TTTGTGAGAAAAACGCCGCTAAAGACCATGTTCTATAGCGGCG
36810840 TTT
1 TTT
36810843 TTACGCATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 38 0.97
44 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TTTGTGAGAAAAACGCCGCTAAAGACCATGTTCTATAGCGGCG
Found at i:36823538 original size:18 final size:18
Alignment explanation
Indices: 36823515--36823552 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
36823505 TAATATAGTT
36823515 TTATTC-AGTTTATTCGAA
1 TTATTCGAG-TTATTCGAA
36823533 TTATTCGAGTTATTCGAA
1 TTATTCGAGTTATTCGAA
36823551 TT
1 TT
36823553 TTAAAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (18 bp):
TTATTCGAGTTATTCGAA
Done.