Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 26 of 163
Found at i:7072962 original size:12 final size:12
Alignment explanation
Indices: 7072945--7072980 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
7072935 TTGTTTATAG
7072945 TTATAATTGTAA
1 TTATAATTGTAA
*
7072957 TTATAACTGTAA
1 TTATAATTGTAA
*
7072969 TTATATTTGTAA
1 TTATAATTGTAA
7072981 CTTTAAAAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (12 bp):
TTATAATTGTAA
Found at i:7076929 original size:17 final size:17
Alignment explanation
Indices: 7076907--7076997 Score: 69
Period size: 17 Copynumber: 5.4 Consensus size: 17
7076897 GCAAGGTAAG
7076907 GAGCTCGCACTATTGGT
1 GAGCTCGCACTATTGGT
* * *
7076924 GAGCTCGTAGTCTTGGT
1 GAGCTCGCACTATTGGT
* *
7076941 GAGTTCGCAC-ATTTAGT
1 GAGCTCGCACTA-TTGGT
* * * *
7076958 GAGCTCGTAGTCTTGAT
1 GAGCTCGCACTATTGGT
7076975 GAGCTCGCAC-ATTTGGT
1 GAGCTCGCACTA-TTGGT
7076992 GAGCTC
1 GAGCTC
7076998 ACAAATTTGT
Statistics
Matches: 53, Mismatches: 18, Indels: 6
0.69 0.23 0.08
Matches are distributed among these distances:
17 53 1.00
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (17 bp):
GAGCTCGCACTATTGGT
Found at i:7076960 original size:34 final size:34
Alignment explanation
Indices: 7076907--7076997 Score: 130
Period size: 34 Copynumber: 2.7 Consensus size: 34
7076897 GCAAGGTAAG
* *
7076907 GAGCTCGCAC-TATTGGTGAGCTCGTAGTCTTGGT
1 GAGCTCGCACAT-TTAGTGAGCTCGTAGTCTTGAT
*
7076941 GAGTTCGCACATTTAGTGAGCTCGTAGTCTTGAT
1 GAGCTCGCACATTTAGTGAGCTCGTAGTCTTGAT
*
7076975 GAGCTCGCACATTTGGTGAGCTC
1 GAGCTCGCACATTTAGTGAGCTC
7076998 ACAAATTTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
34 50 0.98
35 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.32
Consensus pattern (34 bp):
GAGCTCGCACATTTAGTGAGCTCGTAGTCTTGAT
Found at i:7082919 original size:16 final size:16
Alignment explanation
Indices: 7082898--7082929 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7082888 TCTTCTCAGA
7082898 CTATCGGGACAATTGT
1 CTATCGGGACAATTGT
7082914 CTATCGGGACAATTGT
1 CTATCGGGACAATTGT
7082930 TATTTTGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (16 bp):
CTATCGGGACAATTGT
Found at i:7084814 original size:2 final size:2
Alignment explanation
Indices: 7084807--7084831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7084797 ACGTTTTTCT
7084807 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7084832 TTAAATGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7102992 original size:2 final size:2
Alignment explanation
Indices: 7102985--7103012 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7102975 TGAAAATTTA
7102985 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7103013 GGACTCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7103774 original size:12 final size:12
Alignment explanation
Indices: 7103757--7103781 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7103747 AAATTTAAAA
7103757 AAATTTCAATCG
1 AAATTTCAATCG
7103769 AAATTTCAATCG
1 AAATTTCAATCG
7103781 A
1 A
7103782 TCTAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATTTCAATCG
Found at i:7108625 original size:15 final size:15
Alignment explanation
Indices: 7108607--7108658 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
7108597 TAATACTCTC
*
7108607 TTTTTTCGTTTTTGT
1 TTTTTTTGTTTTTGT
7108622 TTTTTTTG-TTTTGT
1 TTTTTTTGTTTTTGT
7108636 TTTGTTTTGTTTTT-T
1 TTT-TTTTGTTTTTGT
7108651 TTCTTTTT
1 TT-TTTTT
7108659 TTCATTTTCT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 9 0.27
15 19 0.58
16 5 0.15
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.85
Consensus pattern (15 bp):
TTTTTTTGTTTTTGT
Found at i:7108627 original size:9 final size:9
Alignment explanation
Indices: 7108607--7108660 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 9
7108597 TAATACTCTC
*
7108607 TTTTTTCGT
1 TTTTTTTGT
*
7108616 TTTTGTTTTT
1 TTTT-TTTGT
7108626 TTTGTTTTGT
1 TTT-TTTTGT
7108636 TTTGTTTTGT
1 TTT-TTTTGT
*
7108646 TTTTTTTCT
1 TTTTTTTGT
7108655 TTTTTT
1 TTTTTT
7108661 CATTTTCTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
9 15 0.38
10 23 0.59
11 1 0.03
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:7108633 original size:5 final size:5
Alignment explanation
Indices: 7108616--7108657 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
7108606 CTTTTTTCGT
*
7108616 TTTTG TTTT- TTTTG TTTTG TTTTG TTTTG TTTT- TTTTC TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
7108658 TTTCATTTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
4 8 0.23
5 27 0.77
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:7108638 original size:10 final size:10
Alignment explanation
Indices: 7108616--7108657 Score: 61
Period size: 9 Copynumber: 4.4 Consensus size: 10
7108606 CTTTTTTCGT
7108616 TTTTGTTTT-
1 TTTTGTTTTG
7108625 TTTTGTTTTG
1 TTTTGTTTTG
7108635 TTTTGTTTTG
1 TTTTGTTTTG
*
7108645 TTTT-TTTTC
1 TTTTGTTTTG
7108654 TTTT
1 TTTT
7108658 TTTCATTTTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 17 0.55
10 14 0.45
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (10 bp):
TTTTGTTTTG
Found at i:7114524 original size:21 final size:21
Alignment explanation
Indices: 7114500--7114544 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
7114490 TCCTTTCCAT
7114500 TATCTTTATATTTAATAAATA
1 TATCTTTATATTTAATAAATA
*
7114521 TATCTTTGTATTTAATAAATA
1 TATCTTTATATTTAATAAATA
7114542 TAT
1 TAT
7114545 TAGAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (21 bp):
TATCTTTATATTTAATAAATA
Found at i:7115269 original size:33 final size:35
Alignment explanation
Indices: 7115207--7115284 Score: 92
Period size: 33 Copynumber: 2.3 Consensus size: 35
7115197 GTGTGAAGAT
7115207 TATATATTTAAAATAATATTCAATAAATAATGAAG
1 TATATATTTAAAATAATATTCAATAAATAATGAAG
* *
7115242 TATATAATTTAAAATTA-ATT-AAT-AATAATGCA-
1 TATAT-ATTTAAAATAATATTCAATAAATAATGAAG
7115274 TATAATATTTA
1 TAT-ATATTTA
7115285 TAGTATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
32 8 0.21
33 10 0.26
34 3 0.08
35 8 0.21
36 10 0.26
ACGTcount: A:0.53, C:0.03, G:0.04, T:0.41
Consensus pattern (35 bp):
TATATATTTAAAATAATATTCAATAAATAATGAAG
Found at i:7117422 original size:21 final size:20
Alignment explanation
Indices: 7117375--7117429 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 20
7117365 TTTGTGTTTT
*
7117375 TTTTAATAGTTTTA-TATTA
1 TTTTAATATTTTTATTATTA
* *
7117394 TATTAATATTTTTATTTTTAA
1 TTTTAATATTTTTATTATT-A
7117415 TTTTAATATTTTTAT
1 TTTTAATATTTTTAT
7117430 CTTGAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 12 0.40
20 3 0.10
21 15 0.50
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTAATATTTTTATTATTA
Found at i:7125009 original size:29 final size:29
Alignment explanation
Indices: 7124976--7125033 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
7124966 TTTAAGGGGG
7124976 TTAGAG-GATTACTAGTTGAGCCATAAAAA
1 TTAGAGAGATTAC-AGTTGAGCCATAAAAA
* * *
7125005 TTAGAGAGATTTCAGTTTAGCCTTAAAAA
1 TTAGAGAGATTACAGTTGAGCCATAAAAA
7125034 CTAAGGGGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (29 bp):
TTAGAGAGATTACAGTTGAGCCATAAAAA
Found at i:7130030 original size:11 final size:11
Alignment explanation
Indices: 7130014--7130046 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
7130004 AGTATTGAGG
7130014 GAAAAATAATT
1 GAAAAATAATT
*
7130025 GAAAAATAATG
1 GAAAAATAATT
7130036 GAAAAATAATT
1 GAAAAATAATT
7130047 TTGTGAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (11 bp):
GAAAAATAATT
Found at i:7151275 original size:30 final size:30
Alignment explanation
Indices: 7151241--7151326 Score: 84
Period size: 33 Copynumber: 2.7 Consensus size: 30
7151231 TAATATATGA
7151241 AATATTAATTTTAAATATTTATAAGTAAT-T
1 AATATTAATTTTAAATATTTATAAG-AATAT
* *
7151271 AATATTAATTATTTAAAAATTTAATTAGAATAT
1 AATATTAA-T-TTTAAATATTT-ATAAGAATAT
*
7151304 ATAAATTATATTTTAAATATTTA
1 A-ATATTA-ATTTTAAATATTTA
7151327 AATATAATCA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
30 8 0.17
31 1 0.02
32 14 0.30
33 16 0.35
34 6 0.13
35 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (30 bp):
AATATTAATTTTAAATATTTATAAGAATAT
Found at i:7151326 original size:33 final size:35
Alignment explanation
Indices: 7151280--7151359 Score: 94
Period size: 33 Copynumber: 2.3 Consensus size: 35
7151270 TAATATTAAT
* *
7151280 TATTTAAAAATTTAATTAGAAT-ATATAAAT-TATA
1 TATTTAAATATTTAAATAGAATCATA-AAATATATA
* *
7151314 T-TTTAAATATTTAAATATAATCATAAAATATTTA
1 TATTTAAATATTTAAATAGAATCATAAAATATATA
7151348 TATTTAAATATT
1 TATTTAAATATT
7151360 AGCACAGTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 21 0.54
34 8 0.21
35 10 0.26
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (35 bp):
TATTTAAATATTTAAATAGAATCATAAAATATATA
Found at i:7154164 original size:27 final size:26
Alignment explanation
Indices: 7154110--7154164 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
7154100 TTAGTACGTT
* *
7154110 GAATTAATTGGAGAATTTGGATCGTG
1 GAATTAATTAGAGAATTTGGATAGTG
*
7154136 GAATTAATTAGAGAATTTTGGATATTG
1 GAATTAATTAGAGAA-TTTGGATAGTG
7154163 GA
1 GA
7154165 GTATCTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (26 bp):
GAATTAATTAGAGAATTTGGATAGTG
Found at i:7156515 original size:23 final size:23
Alignment explanation
Indices: 7156461--7156506 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
7156451 ACTTTAACTC
*
7156461 AAACAAATAAACAGAGTTTAATT
1 AAACAATTAAACAGAGTTTAATT
7156484 AAACAATTAAACAGAGTTTAATT
1 AAACAATTAAACAGAGTTTAATT
7156507 GAAAGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (23 bp):
AAACAATTAAACAGAGTTTAATT
Found at i:7158139 original size:8 final size:8
Alignment explanation
Indices: 7158126--7158150 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7158116 AAATAGTGGA
7158126 AGAAATTG
1 AGAAATTG
7158134 AGAAATTG
1 AGAAATTG
7158142 AGAAATTG
1 AGAAATTG
7158150 A
1 A
7158151 ACACACAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AGAAATTG
Found at i:7158501 original size:24 final size:24
Alignment explanation
Indices: 7158457--7158507 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
7158447 AATTTGCCTC
*
7158457 AAACAAATAAACAGAATTTAATTG
1 AAACAAATAAACAGAATTTAACTG
*
7158481 AAACAATTAAACAGAGA-TTAACTG
1 AAACAAATAAACAGA-ATTTAACTG
7158505 AAA
1 AAA
7158508 GATTATTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAATTTAACTG
Found at i:7160206 original size:27 final size:26
Alignment explanation
Indices: 7160152--7160206 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
7160142 TTAGTACGTT
* *
7160152 GAATTAATTGGAGAATTTGGATCGTG
1 GAATTAATTAGAGAATTTGGATAGTG
*
7160178 GAATTAATTAGAGAATTTTGGATATTG
1 GAATTAATTAGAGAA-TTTGGATAGTG
7160205 GA
1 GA
7160207 GTATCTGTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (26 bp):
GAATTAATTAGAGAATTTGGATAGTG
Found at i:7163201 original size:24 final size:24
Alignment explanation
Indices: 7163173--7163236 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
7163163 TTAGACTAAT
*
7163173 AAGAGTTTGACTT-AAACAAATAAA
1 AAGAGTTT-AATTGAAACAAATAAA
*
7163197 AAGAGTTTAATTGAAACAATTAAA
1 AAGAGTTTAATTGAAACAAATAAA
* *
7163221 CAGAGTTTAACTGAAA
1 AAGAGTTTAATTGAAA
7163237 GATTATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 3 0.09
24 32 0.91
ACGTcount: A:0.52, C:0.08, G:0.14, T:0.27
Consensus pattern (24 bp):
AAGAGTTTAATTGAAACAAATAAA
Found at i:7169150 original size:20 final size:21
Alignment explanation
Indices: 7169124--7169168 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 21
7169114 GGTTTAAATG
7169124 ATTTTTTT-TAAATTT-TTA-A
1 ATTTTTTTCT-AATTTATTATA
7169143 ATTTTTTTCTAATTTATTATA
1 ATTTTTTTCTAATTTATTATA
7169164 ATTTT
1 ATTTT
7169169 ATATTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 13 0.57
20 4 0.17
21 6 0.26
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTTTCTAATTTATTATA
Found at i:7169301 original size:19 final size:20
Alignment explanation
Indices: 7169279--7169326 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7169269 GATTTGTTTA
7169279 TAATTTTATAAATTT-ATAT
1 TAATTTTATAAATTTAATAT
*
7169298 TAATTTTA-ATATTTAATAT
1 TAATTTTATAAATTTAATAT
*
7169317 T-TTTTTATAA
1 TAATTTTATAA
7169327 TCTTTTATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 10 0.42
19 14 0.58
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TAATTTTATAAATTTAATAT
Found at i:7174899 original size:13 final size:13
Alignment explanation
Indices: 7174881--7174914 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
7174871 CTCACCACAC
7174881 CATTTGACCTCCT
1 CATTTGACCTCCT
7174894 CATTTGACCTCCT
1 CATTTGACCTCCT
7174907 CATTTGAC
1 CATTTGAC
7174915 AAATAAACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.18, C:0.35, G:0.09, T:0.38
Consensus pattern (13 bp):
CATTTGACCTCCT
Found at i:7175542 original size:71 final size:71
Alignment explanation
Indices: 7175426--7175569 Score: 225
Period size: 71 Copynumber: 2.0 Consensus size: 71
7175416 TGAGTAGGTT
7175426 AAGAATGAAGGGTTATTGAAAAGACGAAAACCGAGTCATGTCAGTCACTAGAGTTCAATCCAATG
1 AAGAATGAAGGGTTATTGAAAAGACGAAAACCGAGTCATGTCAGTCACTAGAGTTCAATCCAATG
*
7175491 GTGAAG
66 GTAAAG
* * * ** *
7175497 AAGAATGAAGGGTTATTGAAATGACGAAAATCGAGTCATTTCAGTCTTTAGTGTTCAATCCAATG
1 AAGAATGAAGGGTTATTGAAAAGACGAAAACCGAGTCATGTCAGTCACTAGAGTTCAATCCAATG
7175562 GTAAAG
66 GTAAAG
7175568 AA
1 AA
7175570 TCGACGTATC
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 66 1.00
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (71 bp):
AAGAATGAAGGGTTATTGAAAAGACGAAAACCGAGTCATGTCAGTCACTAGAGTTCAATCCAATG
GTAAAG
Found at i:7178739 original size:20 final size:21
Alignment explanation
Indices: 7178696--7178749 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
7178686 AGTTTTTAGT
*
7178696 ATTTATATTTTTTGTTAATTTA
1 ATTT-TATTTTTTGTTAATCTA
7178718 ATCTTTATTTTTT-TTAA-CTA
1 AT-TTTATTTTTTGTTAATCTA
*
7178738 ATTTTAATTTTT
1 ATTTTATTTTTT
7178750 AACTTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 9 0.31
20 4 0.14
21 4 0.14
22 10 0.34
23 2 0.07
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.69
Consensus pattern (21 bp):
ATTTTATTTTTTGTTAATCTA
Found at i:7179985 original size:22 final size:22
Alignment explanation
Indices: 7179957--7180000 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7179947 ACATTAGAGT
*
7179957 ATTCATCTATAATTTCATCATG
1 ATTCATCTATAATTTCAACATG
*
7179979 ATTCATCTCTAATTTCAACATG
1 ATTCATCTATAATTTCAACATG
7180001 GTATCAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (22 bp):
ATTCATCTATAATTTCAACATG
Found at i:7181367 original size:48 final size:49
Alignment explanation
Indices: 7181281--7181373 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 49
7181271 AAGATTTTTC
*
7181281 ATTATTTAATCTATTATTAATTAATATTATAATATAATA-ATATAAATT
1 ATTATTTAATCTAGTATTAATTAATATTATAATATAATATATATAAATT
* * *
7181329 ATTATTTAAT-TAGTATTATTTTATTATTATTAA-CTAATATATATA
1 ATTATTTAATCTAGTATTA-ATTAATATTA-TAATATAATATATATA
7181374 TATATATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
47 7 0.18
48 23 0.61
49 8 0.21
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (49 bp):
ATTATTTAATCTAGTATTAATTAATATTATAATATAATATATATAAATT
Found at i:7183570 original size:68 final size:68
Alignment explanation
Indices: 7183456--7183593 Score: 224
Period size: 68 Copynumber: 2.0 Consensus size: 68
7183446 CTTTGCAAGT
**
7183456 TAGGCATGCGAGACATCTATGCATCAACTAGAGGGGAAGTGTTGAGAATCTTTGATAACATTAAA
1 TAGGCATGCGAGACATCTATGCATCAACTAGAGGGGAAGTACTGAGAATCTTTGATAACATTAAA
7183521 TAG
66 TAG
* *
7183524 TAGGCATGCGAGACATCTATGCATCAACTTGAGAGGG-AGTACTGAGAATCTTTGATAGCATTAA
1 TAGGCATGCGAGACATCTATGCATCAACTAGAG-GGGAAGTACTGAGAATCTTTGATAACATTAA
7183588 ATAG
65 ATAG
7183592 TA
1 TA
7183594 TCTTTAGAGA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
68 62 0.95
69 3 0.05
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.27
Consensus pattern (68 bp):
TAGGCATGCGAGACATCTATGCATCAACTAGAGGGGAAGTACTGAGAATCTTTGATAACATTAAA
TAG
Found at i:7183762 original size:22 final size:22
Alignment explanation
Indices: 7183737--7183778 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7183727 AATACATTAG
7183737 ATTATTCATCTATAATTTCATC
1 ATTATTCATCTATAATTTCATC
*
7183759 ATTATTCATCTCTAATTTCA
1 ATTATTCATCTATAATTTCA
7183779 ATAGTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTATTCATCTATAATTTCATC
Found at i:7187040 original size:17 final size:19
Alignment explanation
Indices: 7187001--7187041 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
7186991 AAAATTGTTC
*
7187001 ATTTAAACTCTTTAAAATT
1 ATTTAAAATCTTTAAAATT
7187020 -TTTAAAAT-TTT-AAATT
1 ATTTAAAATCTTTAAAATT
7187036 ATTTAA
1 ATTTAA
7187042 GGTAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 5 0.25
17 8 0.40
18 7 0.35
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTAAAATCTTTAAAATT
Found at i:7192292 original size:51 final size:50
Alignment explanation
Indices: 7192203--7192299 Score: 124
Period size: 51 Copynumber: 1.9 Consensus size: 50
7192193 CAAAAAATTA
* **
7192203 ATAATGCTGAGAATAACTATAAAATAAAACCAAATATTATAATAAACTATT
1 ATAATGCTGAGAATAAC-AGAAAATAAAAAAAAATATTATAATAAACTATT
*
7192254 ATAATGCTGAGAATAAC-GAAATTGAAAAAAAAACTATTATAATAAA
1 ATAATGCTGAGAATAACAGAAAAT-AAAAAAAAA-TATTATAATAAA
7192300 GTTTAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
49 4 0.10
50 7 0.17
51 29 0.73
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (50 bp):
ATAATGCTGAGAATAACAGAAAATAAAAAAAAATATTATAATAAACTATT
Found at i:7192332 original size:31 final size:31
Alignment explanation
Indices: 7192294--7192352 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
7192284 AAACTATTAT
*
7192294 AATAAAGTTTAAAATATTTTTTAATTTTAAA
1 AATAAAGTTTAAAAGATTTTTTAATTTTAAA
*
7192325 AATAAAGTTTAAGAGATTTTTTAATTTT
1 AATAAAGTTTAAAAGATTTTTTAATTTT
7192353 TAATTTTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (31 bp):
AATAAAGTTTAAAAGATTTTTTAATTTTAAA
Found at i:7193540 original size:28 final size:28
Alignment explanation
Indices: 7193509--7193568 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
7193499 AAAATGTGAT
7193509 TTTTGGAT-ACCCGGGGGTAAAATGGTAA
1 TTTTGG-TCACCCGGGGGTAAAATGGTAA
** *
7193537 TTTTGGTCACTTGGGGGTAGAATGGTAA
1 TTTTGGTCACCCGGGGGTAAAATGGTAA
7193565 TTTT
1 TTTT
7193569 AGGAAAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 1 0.04
28 27 0.96
ACGTcount: A:0.23, C:0.08, G:0.32, T:0.37
Consensus pattern (28 bp):
TTTTGGTCACCCGGGGGTAAAATGGTAA
Found at i:7193619 original size:58 final size:56
Alignment explanation
Indices: 7193550--7193772 Score: 198
Period size: 59 Copynumber: 3.8 Consensus size: 56
7193540 TGGTCACTTG
* * * *
7193550 GGGGTAGAATGGTAATTTTAGGAAAATTAGGGTCAAAAATGGAATTTTTAGACA-TTC
1 GGGGTAAAATGGTAATTTTTGGAAAATT-GGGTCAAAAATGGAA-TTTTAGAAAGTTT
* * *
7193607 GGCGGTAAAATGGTACTTTTTGGAAGAATCGGGGTCAAAAATGAAATTTTAGAAAGTTT
1 GG-GGTAAAATGGTAATTTTTGGAA-AAT-TGGGTCAAAAATGGAATTTTAGAAAGTTT
* * * *
7193666 GGGGGTAAAAAT-ATAATTTTTGAAAAAATTGAGGTCAAAACTGGAATTTTGGAAAGTTT
1 -GGGGT-AAAATGGTAATTTTTG-GAAAATTG-GGTCAAAAATGGAATTTTAGAAAGTTT
*** * *
7193725 GGGGTAAAATGGTAATTTTCCAAAAATCGAGGTCATAAATGGAATTTT
1 GGGGTAAAATGGTAATTTTTGGAAAATTG-GGTCAAAAATGGAATTTT
7193773 GGTAAAATAT
Statistics
Matches: 137, Mismatches: 20, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
57 31 0.23
58 40 0.29
59 57 0.42
60 9 0.07
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (56 bp):
GGGGTAAAATGGTAATTTTTGGAAAATTGGGTCAAAAATGGAATTTTAGAAAGTTT
Found at i:7193669 original size:29 final size:28
Alignment explanation
Indices: 7193637--7193733 Score: 79
Period size: 29 Copynumber: 3.3 Consensus size: 28
7193627 TGGAAGAATC
7193637 GGGGTCAAAAATGAAATTTTAGAAAGTTT
1 GGGGT-AAAAATGAAATTTTAGAAAGTTT
* **
7193666 GGGGGTAAAAAT-ATAATTTTTGAAAAAATT
1 -GGGGTAAAAATGA-AATTTTAG-AAAGTTT
* * * *
7193696 GAGGTCAAAACTGGAATTTTGGAAAGTTT
1 GGGGT-AAAAATGAAATTTTAGAAAGTTT
7193725 GGGGTAAAA
1 GGGGTAAAA
7193734 TGGTAATTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
28 5 0.09
29 26 0.49
30 22 0.42
ACGTcount: A:0.41, C:0.03, G:0.26, T:0.30
Consensus pattern (28 bp):
GGGGTAAAAATGAAATTTTAGAAAGTTT
Found at i:7193673 original size:59 final size:58
Alignment explanation
Indices: 7193547--7193743 Score: 202
Period size: 59 Copynumber: 3.4 Consensus size: 58
7193537 TTTTGGTCAC
* * * * *
7193547 TTGGGGGTAGAATGGTAATTTTAGGAAAATTAGGGTCAAAAATGGAATTTTTAGACA-T
1 TTGGGGGTAAAATGGTAATTTTTGGAAAATTGGGGTCAAAAAT-GAAATTTTAGAAAGT
* * * *
7193605 TCGGCGGTAAAATGGTACTTTTTGGAAGAATCGGGGTCAAAAATGAAATTTTAGAAAGT
1 TTGGGGGTAAAATGGTAATTTTTGGAA-AATTGGGGTCAAAAATGAAATTTTAGAAAGT
* * * * * *
7193664 TTGGGGGTAAAAAT-ATAATTTTTGAAAAAATTGAGGTCAAAACTGGAATTTTGGAAAGT
1 TTGGGGGT-AAAATGGTAATTTTTG-GAAAATTGGGGTCAAAAATGAAATTTTAGAAAGT
7193723 TT-GGGGTAAAATGGTAATTTT
1 TTGGGGGTAAAATGGTAATTTT
7193744 CCAAAAATCG
Statistics
Matches: 114, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
57 5 0.04
58 45 0.39
59 57 0.50
60 7 0.06
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (58 bp):
TTGGGGGTAAAATGGTAATTTTTGGAAAATTGGGGTCAAAAATGAAATTTTAGAAAGT
Found at i:7194885 original size:3 final size:3
Alignment explanation
Indices: 7194872--7194930 Score: 64
Period size: 3 Copynumber: 19.0 Consensus size: 3
7194862 TTAGATTTCT
** * *
7194872 TTA TTA TTTA TTA TTA AAA TTA TTA TTA TTA TTG TTA TTA ATA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7194918 TTTA TTA TTA TTA
1 -TTA TTA TTA TTA
7194931 GTGCCCTATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
3 40 0.87
4 6 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7195645 original size:6 final size:6
Alignment explanation
Indices: 7195622--7195750 Score: 119
Period size: 6 Copynumber: 22.2 Consensus size: 6
7195612 GCTTTTATTC
*
7195622 ATTTAA ATTTACA A--TAA ATTTAA ATTTAA ATTTAA ATTTAA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
** **
7195669 A-TTAA ATTTAA ATTTAA AAATAA ATTTAA ATTTAA AAAT-A ATTTAAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTT-AA
* *
7195716 ATTTAA A-ATAA ATTT-A ATCTTAA A-ATAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA AT-TTAA ATTTAA ATTTAA A
7195751 ACGGGTTTAG
Statistics
Matches: 100, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
4 2 0.02
5 21 0.21
6 68 0.68
7 9 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (6 bp):
ATTTAA
Found at i:7195659 original size:18 final size:17
Alignment explanation
Indices: 7195622--7195750 Score: 163
Period size: 18 Copynumber: 7.4 Consensus size: 17
7195612 GCTTTTATTC
*
7195622 ATTTAAATTTACAATAA
1 ATTTAAATTTAAAATAA
*
7195639 ATTTAAATTTAAATTTAA
1 ATTTAAATTTAAA-ATAA
* *
7195657 ATTTAAACTTAAATTAA
1 ATTTAAATTTAAAATAA
7195674 ATTTAAATTTAAAAATAA
1 ATTTAAATTT-AAAATAA
7195692 ATTTAAATTTAAAA-ATA
1 ATTTAAATTTAAAATA-A
7195709 ATTTAAAATTTAAAATAA
1 ATTT-AAATTTAAAATAA
7195727 ATTT-AATCTTAAAATAA
1 ATTTAAAT-TTAAAATAA
7195744 ATTTAAA
1 ATTTAAA
7195751 ACGGGTTTAG
Statistics
Matches: 100, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.04
17 47 0.47
18 48 0.48
19 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:7195675 original size:35 final size:33
Alignment explanation
Indices: 7195622--7195750 Score: 150
Period size: 35 Copynumber: 3.7 Consensus size: 33
7195612 GCTTTTATTC
* *
7195622 ATTTAAATTTACAATAAATTTAAATTTAAATTTAA
1 ATTTAAACTTA-AATAAATTTAAATTTAAA-ATAA
7195657 ATTTAAACTTAAATTAAATTTAAATTTAAAAATAA
1 ATTTAAACTTAAA-TAAATTTAAATTT-AAAATAA
* *
7195692 ATTTAAATTTAAAAATAATTTAAAATTTAAAATAA
1 ATTTAAACTTAAATA-AATTT-AAATTTAAAATAA
*
7195727 ATTTAATCTTAAAATAAATTTAAA
1 ATTTAAACTT-AAATAAATTTAAA
7195751 ACGGGTTTAG
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
34 6 0.07
35 63 0.77
36 13 0.16
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (33 bp):
ATTTAAACTTAAATAAATTTAAATTTAAAATAA
Found at i:7196205 original size:17 final size:17
Alignment explanation
Indices: 7196178--7196229 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
7196168 TTAAATTTGC
**
7196178 ATAAAATTTAAATTTATT
1 ATAAAA-TTAAATTTAAA
*
7196196 ATAAAATTAAAATTAAA
1 ATAAAATTAAATTTAAA
*
7196213 ATTAAATTAAA-TTAAA
1 ATAAAATTAAATTTAAA
7196229 A
1 A
7196230 GTCCAAAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 6 0.20
17 18 0.60
18 6 0.20
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAAAATTAAATTTAAA
Found at i:7196212 original size:12 final size:12
Alignment explanation
Indices: 7196197--7196229 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7196187 AAATTTATTA
7196197 TAAAATTAAAAT
1 TAAAATTAAAAT
7196209 TAAAATT-AAAT
1 TAAAATTAAAAT
7196220 T-AAATTAAAA
1 TAAAATTAAAA
7196230 GTCCAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 5 0.25
11 8 0.40
12 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAATTAAAAT
Found at i:7196603 original size:26 final size:26
Alignment explanation
Indices: 7196574--7196666 Score: 107
Period size: 26 Copynumber: 3.4 Consensus size: 26
7196564 TGTAAAGGGT
7196574 TACAAACCCTGTTCTTGAAATCAATA
1 TACAAACCCTGTTCTTGAAATCAATA
**
7196600 TACAAACCCT-TTCCGAGAAATCAATTCAA
1 TACAAACCCTGTT-CTTGAAATCAA-T--A
7196629 GTTACAAACCCTGTTCTTGAAATCAATA
1 --TACAAACCCTGTTCTTGAAATCAATA
7196657 TACAAACCCT
1 TACAAACCCT
7196667 TTCCGAGAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
25 2 0.04
26 29 0.52
27 1 0.02
28 1 0.02
29 1 0.02
30 1 0.02
31 19 0.34
32 2 0.04
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.28
Consensus pattern (26 bp):
TACAAACCCTGTTCTTGAAATCAATA
Found at i:7196638 original size:31 final size:30
Alignment explanation
Indices: 7196594--7196694 Score: 122
Period size: 31 Copynumber: 3.4 Consensus size: 30
7196584 GTTCTTGAAA
7196594 TCAATATACAAACCCTTTCCGAGAAATCAAT
1 TCAAT-TACAAACCCTTTCCGAGAAATCAAT
**
7196625 TCAAGTTACAAACCCTGTT-CTTGAAATCAA-
1 TCAA-TTACAAACCCT-TTCCGAGAAATCAAT
7196655 T--A-TACAAACCCTTTCCGAGAAATCAAT
1 TCAATTACAAACCCTTTCCGAGAAATCAAT
7196682 TCAATTACAAACC
1 TCAATTACAAACC
7196695 TCTGGAAGTA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
25 2 0.03
26 19 0.32
27 1 0.02
28 1 0.02
29 1 0.02
30 9 0.15
31 23 0.39
32 3 0.05
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.27
Consensus pattern (30 bp):
TCAATTACAAACCCTTTCCGAGAAATCAAT
Found at i:7196660 original size:57 final size:57
Alignment explanation
Indices: 7196572--7196694 Score: 239
Period size: 57 Copynumber: 2.2 Consensus size: 57
7196562 ATTGTAAAGG
7196572 GTTACAAACCCTGTTCTTGAAATCAATATACAAACCCTTTCCGAGAAATCAATTCAA
1 GTTACAAACCCTGTTCTTGAAATCAATATACAAACCCTTTCCGAGAAATCAATTCAA
7196629 GTTACAAACCCTGTTCTTGAAATCAATATACAAACCCTTTCCGAGAAATCAATTCAA
1 GTTACAAACCCTGTTCTTGAAATCAATATACAAACCCTTTCCGAGAAATCAATTCAA
7196686 -TTACAAACC
1 GTTACAAACC
7196695 TCTGGAAGTA
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
56 9 0.14
57 57 0.86
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (57 bp):
GTTACAAACCCTGTTCTTGAAATCAATATACAAACCCTTTCCGAGAAATCAATTCAA
Found at i:7196676 original size:26 final size:26
Alignment explanation
Indices: 7196590--7196681 Score: 105
Period size: 26 Copynumber: 3.3 Consensus size: 26
7196580 CCCTGTTCTT
7196590 GAAATCAATATACAAACCCTTTCCGA
1 GAAATCAATATACAAACCCTTTCCGA
**
7196616 GAAATCAATTCAAGTTACAAACCCTGTT-CTT
1 GAAATCAA-T--A--TACAAACCCT-TTCCGA
7196647 GAAATCAATATACAAACCCTTTCCGA
1 GAAATCAATATACAAACCCTTTCCGA
7196673 GAAATCAAT
1 GAAATCAAT
7196682 TCAATTACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
25 2 0.04
26 28 0.51
27 1 0.02
28 1 0.02
29 1 0.02
30 1 0.02
31 19 0.35
32 2 0.04
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (26 bp):
GAAATCAATATACAAACCCTTTCCGA
Found at i:7196983 original size:19 final size:19
Alignment explanation
Indices: 7196961--7196999 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7196951 GCTAATAAAT
*
7196961 ATTATTAGCAATAATAATG
1 ATTATAAGCAATAATAATG
**
7196980 ATTATAATTAATAATAATG
1 ATTATAAGCAATAATAATG
7196999 A
1 A
7197000 CCTTTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
ATTATAAGCAATAATAATG
Found at i:7197054 original size:3 final size:3
Alignment explanation
Indices: 7197048--7197074 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7197038 AGTGTGGTTT
7197048 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
7197075 ACATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7198277 original size:30 final size:28
Alignment explanation
Indices: 7198239--7198712 Score: 131
Period size: 29 Copynumber: 16.2 Consensus size: 28
7198229 ACTTATAGGT
7198239 CCCTAAACTATTCAAAAATTACATTTTAA
1 CCCTAAACT-TTCAAAAATTACATTTTAA
7198268 CCCTAAAACTTT-AGAAAATTACATTTTAA
1 CCCT-AAACTTTCA-AAAATTACATTTTAA
*
7198297 CCTTGAAAC-TTCTAAAAATTACCATTTT-A
1 CCCT-AAACTTTC-AAAAATTA-CATTTTAA
* * *
7198326 CCCTCGAAC-TTCCAAAATTCCATTTTTAA
1 CCCT-AAACTTTCAAAAATTACA-TTTTAA
** *
7198355 -CCTTGA-TTTCACCAAAATTACCATTTTAT
1 CCCTAAACTTTCA--AAAATTA-CATTTTAA
** * *
7198384 CCCCGAACTTTCCAAAATCCTA-TTTTTAA
1 CCCTAAACTTTCAAAAAT--TACATTTTAA
** * * *
7198413 CCC-CGATTTTACCAAAAATTGCCATTTTAC
1 CCCTAAACTTT--CAAAAATT-ACATTTTAA
* * *
7198443 CCCCAAACTTTCCAAAATTCCATTTTAA
1 CCCTAAACTTTCAAAAATTACATTTTAA
*
7198471 CTCC--GA-TTTCACCAAAAATTACCATTTT-A
1 C-CCTAAACTTT---CAAAAATTA-CATTTTAA
* * **
7198500 CCCTCGAACTTTCCAAAATCCCATTTTTAA
1 CCCT-AAACTTTCAAAAATTACA-TTTTAA
** *
7198530 CCC-CGA-TTTCACCAAAAATTACCATTTTTAC
1 CCCTAAACTTT---CAAAAATTA-CA-TTTTAA
* **
7198561 CCCTAAACTTTCTAAAATCCCATTTTAA
1 CCCTAAACTTTCAAAAATTACATTTTAA
** *
7198589 CCC-CGA-TTTCACCAAAAATTACCATTTTAC
1 CCCTAAACTTT---CAAAAATTA-CATTTTAA
*
7198619 CCCTAAACTTTCTAAAATCT-CATTTTTAA
1 CCCTAAACTTTCAAAAAT-TACA-TTTTAA
* *
7198648 CCCT-AATTTCATCAAAAATTACCATTTTAC
1 CCCTAAACTT--TCAAAAATTA-CATTTTAA
*
7198678 CCCTAAACTTTCCAAAATCT-CATTTTTAA
1 CCCTAAACTTTCAAAAAT-TACA-TTTTAA
7198707 CCCTAA
1 CCCTAA
7198713 TTTCACCAAA
Statistics
Matches: 328, Mismatches: 65, Indels: 104
0.66 0.13 0.21
Matches are distributed among these distances:
26 6 0.02
27 11 0.03
28 51 0.16
29 140 0.43
30 81 0.25
31 29 0.09
32 7 0.02
33 3 0.01
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (28 bp):
CCCTAAACTTTCAAAAATTACATTTTAA
Found at i:7198336 original size:58 final size:56
Alignment explanation
Indices: 7198249--7198827 Score: 253
Period size: 59 Copynumber: 10.0 Consensus size: 56
7198239 CCCTAAACTA
** *
7198249 TTCAAAAATTA-CATTTTAACCCTAAAACTTTAGAAAATTACA-TTTTAACCTTGAAAC
1 TTCAAAAATTACCATTTT-ACCCTCGAACTTTACAAAATTACATTTTTAACCTTG--AC
* * *
7198306 TTCTAAAAATTACCATTTTACCCTCGAAC-TTCCAAAATTCCATTTTTAACCTTGAT
1 TTC-AAAAATTACCATTTTACCCTCGAACTTTACAAAATTACATTTTTAACCTTGAC
* * ** *
7198362 TTCACCAAAATTACCATTTTATCCC-CGAACTTTCCAAAA-TCCTATTTTTAACCCCGATT
1 TTCA--AAAATTACCATTTTA-CCCTCGAACTTTACAAAATTAC-ATTTTTAACCTTGA-C
* * * * * * *
7198421 TTACCAAAAATTGCCATTTTACCCCCAAACTTTCCAAAATTCCA-TTTTAA-CTCCGAT
1 TT--CAAAAATTACCATTTTACCCTCGAACTTTACAAAATTACATTTTTAACCT-TGAC
* ** ** *
7198478 TTCACCAAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGAT
1 TT---CAAAAATTACCATTTTACCCTCGAACTTTACAAAATTACATTTTTAACCTTGAC
* ** ** *
7198537 TTCACCAAAAATTACCATTTTTACCC-CTAAACTTT-CTAAAATCCCA-TTTTAACCCCGAT
1 TT---CAAAAATTACCA-TTTTACCCTC-GAACTTTAC-AAAATTACATTTTTAACCTTGAC
* **
7198596 TTCACCAAAAATTACCATTTTACCC-CTAAACTTT-CTAAAATCT-CATTTTTAACCCTAATTTC
1 TT---CAAAAATTACCATTTTACCCTC-GAACTTTAC-AAAAT-TACATTTTTAA-CCT--TGAC
* * * * * *
7198658 ATCAAAAATTACCATTTTACCC-CTAAACTTTCCAAAATCT-CATTTTTAACCCTAAT
1 TTCAAAAATTACCATTTTACCCTC-GAACTTTACAAAAT-TACATTTTTAACCTTGAC
* * *
7198714 TTCACCAAAAATTACCATTTTACCCTCGAATTCTTT--AAAATT-CCTTTTTAAACCCTGAT
1 TT---CAAAAATTACCATTTTACCCTCGAA--CTTTACAAAATTACATTTTT-AACCTTGAC
* * *
7198773 TTACCAAAATTACCATTTTACCCTCGAACCTT-CGAAAATTCCA-TTTTAACCTTGA
1 TT-CAAAAATTACCATTTTACCCTCGAACTTTAC-AAAATTACATTTTTAACCTTGA
7198828 ATTTTCTCGA
Statistics
Matches: 449, Mismatches: 37, Indels: 73
0.80 0.07 0.13
Matches are distributed among these distances:
55 4 0.01
56 13 0.03
57 74 0.16
58 136 0.30
59 184 0.41
60 31 0.07
61 6 0.01
62 1 0.00
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (56 bp):
TTCAAAAATTACCATTTTACCCTCGAACTTTACAAAATTACATTTTTAACCTTGAC
Found at i:7198459 original size:59 final size:59
Alignment explanation
Indices: 7198310--7198795 Score: 566
Period size: 59 Copynumber: 8.3 Consensus size: 59
7198300 TGAAACTTCT
* * **
7198310 AAAAATTACCATTTTACCCTCGAAC-TTCCAAAATTCC-ATTTTTAACCTTGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAA-TCCTATTTTTAACCCCGATTTCACC
* * *
7198368 -AAAATTACCATTTTATCCCCGAACTTTCCAAAATCCTATTTTTAACCCCGATTTTACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATCCTATTTTTAACCCCGATTTCACC
* *
7198426 AAAAATTGCCATTTTACCCCCAAACTTTCCAAAATTCC-A-TTTTAACTCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAA-TCCTATTTTTAACCCCGATTTCACC
* * *
7198484 AAAAATTACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATCCTATTTTTAACCCCGATTTCACC
* * *
7198543 AAAAATTACCATTTTTACCCCTAAACTTTCTAAAATCCCA-TTTTAACCCCGATTTCACC
1 AAAAATTACCA-TTTTACCCCCAAACTTTCCAAAATCCTATTTTTAACCCCGATTTCACC
* * ** *
7198602 AAAAATTACCATTTTACCCCTAAACTTTCTAAAAT-CTCATTTTTAACCCTAATTTCATC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATCCT-ATTTTTAACCCCGATTTCACC
* **
7198661 AAAAATTACCATTTTACCCCTAAACTTTCCAAAAT-CTCATTTTTAACCCTAATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATCCT-ATTTTTAACCCCGATTTCACC
* * * *
7198720 AAAAATTACCATTTTACCCTCGAATTCTTT--AAAATTCCT-TTTTAAACCCTGATTT-ACC
1 AAAAATTACCATTTTACCC-CCAA-ACTTTCCAAAA-TCCTATTTTTAACCCCGATTTCACC
7198778 -AAAATTACCATTTTACCC
1 AAAAATTACCATTTTACCC
7198796 TCGAACCTTC
Statistics
Matches: 387, Mismatches: 28, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
57 47 0.12
58 103 0.27
59 200 0.52
60 31 0.08
61 6 0.02
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.36
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATCCTATTTTTAACCCCGATTTCACC
Found at i:7198616 original size:118 final size:116
Alignment explanation
Indices: 7198310--7198823 Score: 634
Period size: 118 Copynumber: 4.4 Consensus size: 116
7198300 TGAAACTTCT
* **
7198310 AAAAATTACCATTTTA-CCCTCGAAC-TTCCAAAATTCCATTTTTAACCTTGATTTCACC-AAAA
1 AAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCA-TTTTAACCCCGATTTCACCAAAAA
* *
7198372 TTACCATTTTATCCCCGAACTTTCCAAAATCCTATTTTTAACCCCGATTTTACC
64 TTACCATTTTA-CCCCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
* * *
7198426 AAAAATTGCCATTTTACCCCCAAACTTTCCAAAATTCCATTTTAACTCCGATTTCACCAAAAATT
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTAACCCCGATTTCACCAAAAATT
7198491 ACCATTTTACCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
66 ACCATTTTACCC-CGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
* *
7198543 AAAAATTACCATTTTTACCCCTAAACTTTCTAAAATCCCATTTTAACCCCGATTTCACCAAAAAT
1 AAAAATTACCA-TTTTACCCCTAAACTTTCCAAAATTCCATTTTAACCCCGATTTCACCAAAAAT
* * * ** *
7198608 TACCATTTTACCCCTAAACTTTCTAAAATCTCATTTTTAACCCTAATTTCATC
65 TACCATTTTACCCC-GAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
**
7198661 AAAAATTACCATTTTACCCCTAAACTTTCCAAAA-TCTCATTTTTAACCCTAATTTCACCAAAAA
1 AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTC-CA-TTTTAACCCCGATTTCACCAAAAA
* *
7198725 TTACCATTTTACCCTCGAATTCTTT--AAAATTCC-TTTTTAAACCCTGATTT-ACC
64 TTACCATTTTACCC-CGAA--CTTTCCAAAATCCCATTTTT-AACCCCGATTTCACC
* * *
7198778 -AAAATTACCATTTTA-CCCTCGAACCTTCGAAAATTCCATTTTAACC
1 AAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTAACC
7198824 TTGAATTTTC
Statistics
Matches: 353, Mismatches: 31, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
115 12 0.03
116 65 0.18
117 112 0.32
118 159 0.45
119 1 0.00
120 4 0.01
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.35
Consensus pattern (116 bp):
AAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTAACCCCGATTTCACCAAAAATT
ACCATTTTACCCCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACC
Found at i:7198753 original size:29 final size:28
Alignment explanation
Indices: 7198721--7198848 Score: 84
Period size: 29 Copynumber: 4.5 Consensus size: 28
7198711 AATTTCACCA
*
7198721 AAAATTACCATTTTACCCTCGAATTCTTT
1 AAAATT-CCATTTTACCCTCGAATTCTTC
* *
7198750 AAAATTCCTTTTTAAACCCT-G-ATT-TACC
1 AAAATTCCATTTT--ACCCTCGAATTCT-TC
*
7198778 AAAATTACCATTTTACCCTCGAA-CCTTC
1 AAAATT-CCATTTTACCCTCGAATTCTTC
* * *
7198806 GAAAATTCCATTTTAACCTTGAATTTTCTC
1 -AAAATTCCATTTTACCCTCGAATTCT-TC
* *
7198836 GAAATTACATTTT
1 AAAATTCCATTTT
7198849 GCCCCCGAGA
Statistics
Matches: 77, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
27 6 0.08
28 31 0.40
29 33 0.43
30 7 0.09
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (28 bp):
AAAATTCCATTTTACCCTCGAATTCTTC
Found at i:7200273 original size:49 final size:49
Alignment explanation
Indices: 7200209--7200722 Score: 241
Period size: 49 Copynumber: 10.5 Consensus size: 49
7200199 GCCATTGTGA
*
7200209 CTTAAA-CTTTTCCCTTCGTATCTTCGCGGTACTGGATTTGCCGTTGCGG
1 CTTAAATC-TTTCCCTTCGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
* * * * * * *
7200258 CCTAAATCTTTCCCTTCATGTC-TCTGAGGGACTAGG-TTCGCCATTGCGA
1 CTTAAATCTTTCCCTTCGTATCTTC-GCGGTACT-GGATTCGCCGTTGCGG
* * * *
7200307 CTTAAACCTTTCCCTTTTGTATCTTTGCGGTATTGGATTCGCCGTTGCGG
1 CTTAAATCTTTCCC-TTCGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
* * * * * * **
7200357 CTTAAATCTTTCCCTTCATGTC-ACTGAGGTAATAGG-TTCGTCGTTGCAA
1 CTTAAATCTTTCCCTTCGTATCTTC-GCGGTACT-GGATTCGCCGTTGCGG
* * * * * *
7200406 CTTAAACCTTTCCCTTTTGTATCTTTGCGGTACTGGATCCGCCATTGTGG
1 CTTAAATCTTTCCC-TTCGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
* * * * * * *
7200456 CTTAGATCTTTCCCTTCATGTC-TCTGAGGTACTAGG-TTCGTCGTTGTGA
1 CTTAAATCTTTCCCTTCGTATCTTC-GCGGTACT-GGATTCGCCGTTGCGG
* * * *
7200505 CTTAAACCTTTCCCTTGCG--TCTTCGTGGTACTGGATTTGCCGTTGCGA
1 CTTAAATCTTTCCCTT-CGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
* * * * * * *
7200553 CTTAAATCCTTT-TCTTCATGTC-TCTGAGGTACTAGG-TTCGCCATTGTGA
1 CTTAAAT-CTTTCCCTTCGTATCTTC-GCGGTACT-GGATTCGCCGTTGCGG
* * * * * * *
7200602 CTTAAACCTTTCCCTT-GTGTTTTCGTGGTACTGGATCCGTCATTGCGG
1 CTTAAATCTTTCCCTTCGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
* * * * * * * *
7200650 CTT-AATCTTTCCCTTCATGTCTCCGAGGTACTAGG-TTTGCCATTACGA
1 CTTAAATCTTTCCCTTCGTATCTTCGCGGTACT-GGATTCGCCGTTGCGG
* *
7200698 CTTAAACCTTTCCCTT-GTTTCTTCG
1 CTTAAATCTTTCCCTTCGTATCTTCG
7200723 ATGTACTGAG
Statistics
Matches: 346, Mismatches: 92, Indels: 55
0.70 0.19 0.11
Matches are distributed among these distances:
47 16 0.05
48 88 0.25
49 167 0.48
50 74 0.21
51 1 0.00
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.39
Consensus pattern (49 bp):
CTTAAATCTTTCCCTTCGTATCTTCGCGGTACTGGATTCGCCGTTGCGG
Found at i:7200368 original size:99 final size:99
Alignment explanation
Indices: 7200160--7200713 Score: 660
Period size: 99 Copynumber: 5.7 Consensus size: 99
7200150 CACCATTGTA
* * * * *
7200160 GCTTAAAT-TTTCCTTTCATG-CTTTTGAGGTA-TGAGGTTTGCCATTGTGACTTAAACTTTTCC
1 GCTTAAATCTTTCCCTTCATGTC-TCTGAGGTACT-AGGTTCGCCATTGCGACTTAAACCTTTCC
* *
7200222 C-TTCGTATCTTCGCGGTACTGGATTTGCCGTTGCG
64 CTTTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
* *
7200257 GCCTAAATCTTTCCCTTCATGTCTCTGAGGGACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
* *
7200322 TTTGTATCTTTGCGGTATTGGATTCGCCGTTGCG
66 TTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
* * * * *
7200356 GCTTAAATCTTTCCCTTCATGTCACTGAGGTAATAGGTTCGTCGTTGCAACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
* * * *
7200421 TTTGTATCTTTGCGGTACTGGATCCGCCATTGTG
66 TTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
* * * *
7200455 GCTTAGATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGTCGTTGTGACTTAAACCTTTCCC-
1 GCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
** * *
7200519 -TTGCGTCTTCGTGGTACTGGATTTGCCGTTGCG
66 TTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
* * *
7200552 ACTTAAATCCTTT-TCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGTGACTTAAACCTTTCCC
1 GCTTAAAT-CTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCC
* * * * *
7200616 TTGTGT-T-TTCGTGGTACTGGATCCGTCATTGCG
65 TTTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
* * *
7200649 GCTT-AATCTTTCCCTTCATGTCTCCGAGGTACTAGGTTTGCCATTACGACTTAAACCTTTCCCT
1 GCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
7200713 T
66 T
7200714 GTTTCTTCGA
Statistics
Matches: 397, Mismatches: 52, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
95 4 0.01
96 51 0.13
97 111 0.28
98 50 0.13
99 181 0.46
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (99 bp):
GCTTAAATCTTTCCCTTCATGTCTCTGAGGTACTAGGTTCGCCATTGCGACTTAAACCTTTCCCT
TTTGTATCTTCGCGGTACTGGATTCGCCGTTGCG
Found at i:7205449 original size:10 final size:10
Alignment explanation
Indices: 7205434--7205459 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7205424 TTCTTTTTAT
7205434 TATTATTAAA
1 TATTATTAAA
7205444 TATTATTAAA
1 TATTATTAAA
7205454 TATTAT
1 TATTAT
7205460 AGTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TATTATTAAA
Found at i:7205509 original size:28 final size:27
Alignment explanation
Indices: 7205454--7205514 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
7205444 TATTATTAAA
*
7205454 TATTATAGTTATTATTATAATTAATAT
1 TATTATAGTTATTATTATAATCAATAT
* *
7205481 TAATTATGGTTATTATTAATAA-CAGTAT
1 T-ATTATAGTTATTATT-ATAATCAATAT
7205509 TATTAT
1 TATTAT
7205515 TAAGCATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 6 0.21
28 19 0.66
29 4 0.14
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (27 bp):
TATTATAGTTATTATTATAATCAATAT
Found at i:7206202 original size:6 final size:6
Alignment explanation
Indices: 7206185--7206263 Score: 58
Period size: 6 Copynumber: 13.7 Consensus size: 6
7206175 TTTGAACATT
* * *
7206185 AATTTA ATTTTA AATTTA AACTTC AATTTA TAA--TA AATTTA AATTT-
1 AATTTA AATTTA AATTTA AATTTA AATTTA -AATTTA AATTTA AATTTA
* * * *
7206231 TATGTA AATTTA ATTTTA AA-ATA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATT
7206264 CTGTTGGGCT
Statistics
Matches: 54, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
4 2 0.04
5 9 0.17
6 41 0.76
7 2 0.04
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (6 bp):
AATTTA
Found at i:7206229 original size:17 final size:17
Alignment explanation
Indices: 7206209--7206263 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
7206199 TTTAAACTTC
7206209 AATTTATAATAAATTTA
1 AATTTATAATAAATTTA
*
7206226 AATTT-TATGTAAATTTA
1 AATTTATA-ATAAATTTA
* *
7206243 ATTTTAAAATAAATTTA
1 AATTTATAATAAATTTA
7206260 AATT
1 AATT
7206264 CTGTTGGGCT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 2 0.06
17 28 0.90
18 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
AATTTATAATAAATTTA
Found at i:7213440 original size:97 final size:97
Alignment explanation
Indices: 7213266--7213448 Score: 235
Period size: 97 Copynumber: 1.9 Consensus size: 97
7213256 AGGATGTTCT
* * * * *
7213266 ATTATCTCGATTTGAAGAAAAGTCGCACCTAGTAAGTTAAGGTACAAATTTTCAAAATCAGAGAT
1 ATTATCTCGATTTGAAGAAAAATCGCACATAGAAAGTTAAGGCACAAATTTTCAAAATCAGAAAT
* *
7213331 GAAGAAACATTGCCTCGATTTAAGGGTATTCG
66 AAAGAAACATTGCCTCAATTTAAGGGTATTCG
* * *
7213363 ATTATTTCGATTTGAAGAAAAATCGCGCATAGAAAGTTAAGGCGCAAATTTTCAAAATTC-GAAA
1 ATTATCTCGATTTGAAGAAAAATCGCACATAGAAAGTTAAGGCACAAATTTTCAAAA-TCAGAAA
*
7213427 TAAA-AGAATATTGCCTCAATTT
65 TAAAGA-AACATTGCCTCAATTT
7213449 TAAAATTTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
96 1 0.01
97 70 0.96
98 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (97 bp):
ATTATCTCGATTTGAAGAAAAATCGCACATAGAAAGTTAAGGCACAAATTTTCAAAATCAGAAAT
AAAGAAACATTGCCTCAATTTAAGGGTATTCG
Found at i:7213689 original size:28 final size:28
Alignment explanation
Indices: 7213658--7213719 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7213648 AAAATGTGAT
7213658 TTTTGGAT-ACTCGAGAGCAAAATGGTAA
1 TTTTGG-TCACTCGAGAGCAAAATGGTAA
* *
7213686 TTTTGGTCACTCGGGGGCAAAATGGTAA
1 TTTTGGTCACTCGAGAGCAAAATGGTAA
7213714 TTTTGG
1 TTTTGG
7213720 GGAAATTGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.32
Consensus pattern (28 bp):
TTTTGGTCACTCGAGAGCAAAATGGTAA
Found at i:7213893 original size:116 final size:118
Alignment explanation
Indices: 7213763--7213988 Score: 316
Period size: 116 Copynumber: 1.9 Consensus size: 118
7213753 ATCCGGTGGT
* * *
7213763 AAAATGGTACTTTTTGGAAGAATCAAGGTCATAAATGGAATTTTTG-AAAGTTCAAGGGTAAAAT
1 AAAATGGTAATTTTTGAAAAAATCAAGGTCATAAATGGAA-TTTTGAAAAGTTCAAGGGT-AAAT
* * *
7213827 GGTAATTTTTGGAAAA-TCGAGGT-TAAAATGGAATTTTAGAAAGTTTGGGGGTA
64 CGTAATTTTTGAAAAACTCGAGGTCAAAAATGGAATTTTAGAAAGTTTGGGGGTA
* * *
7213880 AAAATGG-AATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTGAAAAGTTTAGGGGTAAATCG
1 AAAATGGTAATTTTTGAAAAAATCAAGGTCATAAATGGAATTTTGAAAAGTTCAAGGGTAAATCG
*
7213944 TAATTTTTGAAAAACTCGGGGTCAAAAATGGAATTTTAGAAAGTT
66 TAATTTTTGAAAAACTCGAGGTCAAAAATGGAATTTTAGAAAGTT
7213989 CAAGGGTAAA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
115 23 0.24
116 45 0.47
117 28 0.29
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (118 bp):
AAAATGGTAATTTTTGAAAAAATCAAGGTCATAAATGGAATTTTGAAAAGTTCAAGGGTAAATCG
TAATTTTTGAAAAACTCGAGGTCAAAAATGGAATTTTAGAAAGTTTGGGGGTA
Found at i:7213951 original size:58 final size:59
Alignment explanation
Indices: 7213760--7213999 Score: 283
Period size: 58 Copynumber: 4.1 Consensus size: 59
7213750 GACATCCGGT
* * * * *
7213760 GGTAAAATGGTACTTTTTGGAAGAATCAAGGTCATAAATGGAATTTTTGAAAGTTCAAG
1 GGTAAAATGGTAATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTAGAAAGTTCAAG
* * ***
7213819 GGTAAAATGGTAATTTTTG-GAAAATCGAGGTTA-AAATGGAATTTTAGAAAGTTTGGG
1 GGTAAAATGGTAATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTAGAAAGTTCAAG
* *
7213876 GGTAAAAATGG-AATTTTTGAAAAAATCGAGGTCATAAATGGAATTTT-GAAAAGTTTAGG
1 GGT-AAAATGGTAATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTAG-AAAGTTCAAG
* * * *
7213935 GGT-AAATCGTAATTTTTGAAAAACTCGGGGTCAAAAATGGAATTTTAGAAAGTTCAAG
1 GGTAAAATGGTAATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTAGAAAGTTCAAG
7213993 GGTAAAA
1 GGTAAAA
7214000 ATATAACTTT
Statistics
Matches: 156, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
57 36 0.23
58 74 0.47
59 46 0.29
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.31
Consensus pattern (59 bp):
GGTAAAATGGTAATTTTTGAAAAAATCGAGGTCATAAATGGAATTTTAGAAAGTTCAAG
Found at i:7213999 original size:29 final size:29
Alignment explanation
Indices: 7213795--7214001 Score: 124
Period size: 29 Copynumber: 7.1 Consensus size: 29
7213785 TCAAGGTCAT
7213795 AAATGGAATTTTTGAAAGTTCAAGGGT-A
1 AAATGGAATTTTTGAAAGTTCAAGGGTAA
* * *
7213823 AAATGGTAATTTTTGGAAA-ATCGA-GGTTA
1 AAATGG-AATTTTT-GAAAGTTCAAGGGTAA
* ***
7213852 AAATGGAATTTTAGAAAGTTTGGGGGTAA
1 AAATGGAATTTTTGAAAGTTCAAGGGTAA
** * *
7213881 AAATGGAATTTTTGAAAAAATCGA-GGTCAT
1 AAATGGAATTTTTG-AAAGTTCAAGGGT-AA
* *
7213911 AAATGGAA-TTTTGAAAAGTTTAGGGGT--
1 AAATGGAATTTTTG-AAAGTTCAAGGGTAA
* ** *
7213938 AAATCGTAATTTTTGAAAAACTC-GGGGTCAA
1 AAAT-GGAATTTTTG-AAAGTTCAAGGGT-AA
*
7213969 AAATGGAATTTTAGAAAGTTCAAGGGTAA
1 AAATGGAATTTTTGAAAGTTCAAGGGTAA
7213998 AAAT
1 AAAT
7214002 ATAACTTTTG
Statistics
Matches: 138, Mismatches: 27, Indels: 27
0.72 0.14 0.14
Matches are distributed among these distances:
27 8 0.06
28 25 0.18
29 68 0.49
30 33 0.24
31 4 0.03
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (29 bp):
AAATGGAATTTTTGAAAGTTCAAGGGTAA
Found at i:7215034 original size:3 final size:3
Alignment explanation
Indices: 7215026--7215103 Score: 84
Period size: 3 Copynumber: 25.0 Consensus size: 3
7215016 TTTTCAGATT
** * *
7215026 TTA TTA TTA TTTA TTA TTA AAA TTA TTA TTA TTA TTG TTG TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
7215072 ATA TTA TTTA TTA TTA TTAA TTA TTA TTA TTA
1 TTA TTA -TTA TTA TTA TT-A TTA TTA TTA TTA
7215104 GTTCCCTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
3 55 0.86
4 9 0.14
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:7215044 original size:13 final size:13
Alignment explanation
Indices: 7215026--7215103 Score: 77
Period size: 13 Copynumber: 5.7 Consensus size: 13
7215016 TTTTCAGATT
7215026 TTATTATTATTTA
1 TTATTATTATTTA
7215039 TTATTAAAATTA-TTA
1 TTATT---ATTATTTA
*
7215054 TTATTATTGTTGTTA
1 TTATTATT-AT-TTA
*
7215069 TTAATATTATTTA
1 TTATTATTATTTA
*
7215082 TTATTATTAATTA
1 TTATTATTATTTA
7215095 TTATTATTA
1 TTATTATTA
7215104 GTTCCCTATT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
12 3 0.06
13 28 0.52
14 1 0.02
15 18 0.33
16 4 0.07
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (13 bp):
TTATTATTATTTA
Found at i:7215862 original size:7 final size:6
Alignment explanation
Indices: 7215797--7215908 Score: 72
Period size: 6 Copynumber: 19.2 Consensus size: 6
7215787 GCTTTTATTC
* ** * *
7215797 ATTTAA ATTTACA A--TAA CTTTAA ATTTAA AAATAA ATTTGA ACTTAA
1 ATTTAA ATTTA-A ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
** * **
7215844 A-TTAA ATTTAA ATTTTAA A-ACAA ATTTTA ATTTAA AAATAA ATTTAA
1 ATTTAA ATTTAA A-TTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
*
7215891 ATTTAA A-ATAA ATTTAA A
1 ATTTAA ATTTAA ATTTAA A
7215909 ATCGATTTAG
Statistics
Matches: 78, Mismatches: 21, Indels: 14
0.69 0.19 0.12
Matches are distributed among these distances:
4 1 0.01
5 14 0.18
6 55 0.71
7 8 0.10
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (6 bp):
ATTTAA
Found at i:7215869 original size:35 final size:36
Alignment explanation
Indices: 7215809--7215905 Score: 126
Period size: 35 Copynumber: 2.8 Consensus size: 36
7215799 TTAAATTTAC
* *
7215809 AATAACTTTAAATTTAAAAATAAATTTGAACTT-AA
1 AATAAATTTAAATTTTAAAATAAATTTGAACTTAAA
* * * *
7215844 ATTAAATTTAAATTTTAAAACAAATTTTAATTTAAA
1 AATAAATTTAAATTTTAAAATAAATTTGAACTTAAA
7215880 AATAAATTTAAA-TTTAAAATAAATTT
1 AATAAATTTAAATTTTAAAATAAATTT
7215906 AAAATCGATT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
35 40 0.75
36 13 0.25
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (36 bp):
AATAAATTTAAATTTTAAAATAAATTTGAACTTAAA
Found at i:7215910 original size:18 final size:17
Alignment explanation
Indices: 7215797--7215908 Score: 134
Period size: 18 Copynumber: 6.4 Consensus size: 17
7215787 GCTTTTATTC
*
7215797 ATTTAAATTTACAATAA
1 ATTTAAATTTAAAATAA
*
7215814 CTTTAAATTTAAAAATAA
1 ATTTAAATTT-AAAATAA
* * *
7215832 ATTTGAACTTAAATTAA
1 ATTTAAATTTAAAATAA
*
7215849 ATTTAAATTTTAAAACAA
1 ATTTAAA-TTTAAAATAA
*
7215867 ATTTTAATTTAAAAATAA
1 ATTTAAATTT-AAAATAA
7215885 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
7215902 ATTTAAA
1 ATTTAAA
7215909 ATCGATTTAG
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
17 38 0.48
18 41 0.52
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:7216344 original size:22 final size:21
Alignment explanation
Indices: 7216297--7216343 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7216287 AGTAGTTTAC
*
7216297 TATTTTAT--TTAATATTTATA
1 TATTTTATAATTAA-ATTTAAA
7216317 TATTTTATAATTAAATTTAAA
1 TATTTTATAATTAAATTTAAA
7216338 TATTTT
1 TATTTT
7216344 TTTTATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 12 0.50
22 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTATAATTAAATTTAAA
Found at i:7218467 original size:2 final size:2
Alignment explanation
Indices: 7218462--7218493 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7218452 CTTTTGAGTC
7218462 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7218494 TATTTCTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7228392 original size:58 final size:58
Alignment explanation
Indices: 7228287--7228451 Score: 199
Period size: 58 Copynumber: 2.8 Consensus size: 58
7228277 TCTAATACTA
* * * * *
7228287 TATATTATAATTTTTACTAATTTATATTTTAATAATAAATATATTAAAAACATTATTAAAT
1 TATA-TATTATTTTTATTAAATTATA-TTTAATAATAATTATATT-AAAACATAATTAAAT
* * *
7228348 TATATATTA-TTTTATTTAATTATATTTAATAATAATTATGTTAAAATATAATTAAAT
1 TATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAACATAATTAAAT
*
7228405 TATTTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAA
1 TATATATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAA
7228452 TTTCATAACA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
57 21 0.23
58 49 0.54
59 13 0.14
60 4 0.04
61 4 0.04
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (58 bp):
TATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAACATAATTAAAT
Found at i:7228587 original size:44 final size:46
Alignment explanation
Indices: 7228538--7228631 Score: 133
Period size: 44 Copynumber: 2.1 Consensus size: 46
7228528 ATTACAACAT
7228538 CATTCCATTCAACCAAAC-AC-AAGAATACT-ATTATAGCTC-TATTC
1 CATTCCATTCAACCAAACAACTAA-AATACTGATTATAG-TCATATTC
*
7228582 CATTCCATTCAACCAAACAACTAAATTACTGATTATAGTCATATTC
1 CATTCCATTCAACCAAACAACTAAAATACTGATTATAGTCATATTC
7228628 CATT
1 CATT
7228632 ACAGCTCTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
44 18 0.40
45 9 0.20
46 18 0.40
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (46 bp):
CATTCCATTCAACCAAACAACTAAAATACTGATTATAGTCATATTC
Found at i:7229082 original size:27 final size:27
Alignment explanation
Indices: 7229051--7229110 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
7229041 GGAGGTTAAA
*
7229051 TTATGATTATATGTATTTTTTTAATAT
1 TTATGATTATAGGTATTTTTTTAATAT
* *
7229078 TTATGATTTTAGGTTTTTTTTTAATAT
1 TTATGATTATAGGTATTTTTTTAATAT
7229105 TTATGA
1 TTATGA
7229111 GAATTAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (27 bp):
TTATGATTATAGGTATTTTTTTAATAT
Found at i:7231422 original size:20 final size:21
Alignment explanation
Indices: 7231379--7231432 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
7231369 AGTTTTTAGT
*
7231379 ATTTATATTTTTTGTTAATTTA
1 ATTT-TATTTTTTGTTAATCTA
7231401 ATCTTTATTTTTT-TTAA-CTA
1 AT-TTTATTTTTTGTTAATCTA
*
7231421 ATTTTAATTTTT
1 ATTTTATTTTTT
7231433 AACTTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 9 0.31
20 4 0.14
21 4 0.14
22 10 0.34
23 2 0.07
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.69
Consensus pattern (21 bp):
ATTTTATTTTTTGTTAATCTA
Found at i:7231828 original size:22 final size:22
Alignment explanation
Indices: 7231800--7231843 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7231790 ACATTAGAGT
* *
7231800 ATTCATCTGTAATTTCATCATG
1 ATTCATCTCTAATTTCAACATG
7231822 ATTCATCTCTAATTTCAACATG
1 ATTCATCTCTAATTTCAACATG
7231844 GTATCAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (22 bp):
ATTCATCTCTAATTTCAACATG
Found at i:7232217 original size:14 final size:14
Alignment explanation
Indices: 7232198--7232224 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7232188 AGATCTATTT
7232198 GATGTTTTTTTGTG
1 GATGTTTTTTTGTG
7232212 GATGTTTTTTTGT
1 GATGTTTTTTTGT
7232225 TCTAATTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.00, G:0.26, T:0.67
Consensus pattern (14 bp):
GATGTTTTTTTGTG
Found at i:7233264 original size:22 final size:22
Alignment explanation
Indices: 7233239--7233280 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7233229 AATGCATTAA
7233239 ATTATTCATCTATAATTTCATC
1 ATTATTCATCTATAATTTCATC
*
7233261 ATTATTCATCTCTAATTTCA
1 ATTATTCATCTATAATTTCA
7233281 ATAGTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTATTCATCTATAATTTCATC
Found at i:7234988 original size:68 final size:68
Alignment explanation
Indices: 7234870--7235007 Score: 231
Period size: 68 Copynumber: 2.0 Consensus size: 68
7234860 CTTTGCAAGT
*
7234870 TAGGCATGCGAGACATCTATGCATCAACTTGAGGGGAAGTGTTGACAATCTTTGATAACATTAAA
1 TAGGCATGCGAGACATCTATGCATCAACTTGAGGGGAAGTGCTGACAATCTTTGATAACATTAAA
7234935 TAG
66 TAG
* * * *
7234938 TAGGCATGCGAGACATCTATGTATCAACTTGAGGGGGAGTGCTGAGAATCTTTGATAGCATTAAA
1 TAGGCATGCGAGACATCTATGCATCAACTTGAGGGGAAGTGCTGACAATCTTTGATAACATTAAA
7235003 TAG
66 TAG
7235006 TA
1 TA
7235008 TCTTTAGAGA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (68 bp):
TAGGCATGCGAGACATCTATGCATCAACTTGAGGGGAAGTGCTGACAATCTTTGATAACATTAAA
TAG
Found at i:7235175 original size:22 final size:22
Alignment explanation
Indices: 7235150--7235191 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7235140 AATACATTAG
7235150 ATTATTCATCTATAATTTCATC
1 ATTATTCATCTATAATTTCATC
*
7235172 ATTATTCATCTCTAATTTCA
1 ATTATTCATCTATAATTTCA
7235192 ATAGTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTATTCATCTATAATTTCATC
Found at i:7238378 original size:17 final size:19
Alignment explanation
Indices: 7238339--7238379 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
7238329 AAAATTGTTC
*
7238339 ATTTAAACTCTTTAAAATT
1 ATTTAAAATCTTTAAAATT
7238358 -TTTAAAAT-TTT-AAATT
1 ATTTAAAATCTTTAAAATT
7238374 ATTTAA
1 ATTTAA
7238380 GGTGAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 5 0.25
17 8 0.40
18 7 0.35
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTAAAATCTTTAAAATT
Found at i:7248886 original size:16 final size:16
Alignment explanation
Indices: 7248865--7248898 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7248855 TGCTTTAGGC
7248865 TCGAGAGCAATAGGGA
1 TCGAGAGCAATAGGGA
7248881 TCGAGAGCAATAGGGA
1 TCGAGAGCAATAGGGA
7248897 TC
1 TC
7248899 CTTTGTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (16 bp):
TCGAGAGCAATAGGGA
Found at i:7252605 original size:24 final size:24
Alignment explanation
Indices: 7252558--7252616 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
7252548 TAAAGTAAGT
*
7252558 TATA-TATTATTTTTCTAATATTA
1 TATATTATAATTTTTCTAATATTA
7252581 TATATTATAATTTTTACTAAT-TTA
1 TATATTATAATTTTT-CTAATATTA
*
7252605 TATTTTAATAAT
1 TATATT-ATAAT
7252617 AATTATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 4 0.13
24 17 0.55
25 10 0.32
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (24 bp):
TATATTATAATTTTTCTAATATTA
Found at i:7252662 original size:20 final size:19
Alignment explanation
Indices: 7252633--7252727 Score: 61
Period size: 20 Copynumber: 4.9 Consensus size: 19
7252623 ATTAAAAACG
7252633 TTATTAAATTATATATTATT
1 TTATTAAATTATAT-TTATT
*
7252653 TTATTTAATTATATTTA--
1 TTATTAAATTATATTTATT
* * * *
7252670 TTAAT-AATTATGTTAAAATA
1 TTATTAAATTATATT--TATT
* *
7252690 TAATTAAATTATTTATTATTT
1 TTATTAAATTATAT-TTA-TT
7252711 TTATTAAATTATATTTA
1 TTATTAAATTATATTTA
7252728 ATAATAATCT
Statistics
Matches: 57, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
16 8 0.14
17 4 0.07
18 1 0.02
19 3 0.05
20 20 0.35
21 20 0.35
22 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (19 bp):
TTATTAAATTATATTTATT
Found at i:7252686 original size:58 final size:58
Alignment explanation
Indices: 7252581--7252746 Score: 194
Period size: 58 Copynumber: 2.8 Consensus size: 58
7252571 TCTAATATTA
* * * *
7252581 TATATTATAATTTTTACTAATTTATATTTTAATAATAATTATATTAAAA-ACGTTATTAAAT
1 TATA-TATTATTTTTATTAAATTATA-TTTAATAATAATTATATTAAAATA--TAATTAAAT
* * *
7252642 TATATATTA-TTTTATTTAATTATATTTATTAATAATTATGTTAAAATATAATTAAAT
1 TATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
*
7252699 TATTTATTATTTTTATTAAATTATATTTAATAATAATCT-TATTAAAAT
1 TATATATTATTTTTATTAAATTATATTTAATAATAAT-TATATTAAAAT
7252747 TTCATAACAA
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
57 16 0.18
58 53 0.58
59 14 0.15
60 4 0.04
61 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (58 bp):
TATATATTATTTTTATTAAATTATATTTAATAATAATTATATTAAAATATAATTAAAT
Found at i:7252959 original size:16 final size:16
Alignment explanation
Indices: 7252890--7252951 Score: 99
Period size: 16 Copynumber: 3.9 Consensus size: 16
7252880 TGAATTACTG
7252890 ATTACAG-TCATATTCC
1 ATTACAGCTC-TATTCC
*
7252906 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
7252922 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
7252938 ATTACAGCTCTATT
1 ATTACAGCTCTATT
7252952 TTATTACAAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
16 41 0.95
17 2 0.05
ACGTcount: A:0.27, C:0.26, G:0.06, T:0.40
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:7253441 original size:28 final size:26
Alignment explanation
Indices: 7253406--7253465 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 26
7253396 GGAGGTTAAA
*
7253406 TTATGATTATATGTAGTTTTTTTAATAT
1 TTATGATTATAGGT--TTTTTTTAATAT
*
7253434 TTATGATTTTAGGTTTTTTTTAATAT
1 TTATGATTATAGGTTTTTTTTAATAT
7253460 TTATGA
1 TTATGA
7253466 GAATTAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 18 0.60
28 12 0.40
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (26 bp):
TTATGATTATAGGTTTTTTTTAATAT
Found at i:7254570 original size:68 final size:68
Alignment explanation
Indices: 7254461--7254598 Score: 222
Period size: 68 Copynumber: 2.0 Consensus size: 68
7254451 CTTTGCAAGT
* *
7254461 TAGGCATGCAAGACATCTATGCATCAATTTGAGGGGAAGTGTTGAGAAACTTTGATAACATTAAA
1 TAGGCATGCAAGACATATATGCATCAACTTGAGGGGAAGTGTTGAGAAACTTTGATAACATTAAA
7254526 TAG
66 TAG
* * * *
7254529 TAGGCATGCGAGACATATATGCATCAACTTGAGGGGGAGTGTTGAGAATCTTTGATAGCATTAAA
1 TAGGCATGCAAGACATATATGCATCAACTTGAGGGGAAGTGTTGAGAAACTTTGATAACATTAAA
7254594 TAG
66 TAG
7254597 TA
1 TA
7254599 TCTTTAGAGA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (68 bp):
TAGGCATGCAAGACATATATGCATCAACTTGAGGGGAAGTGTTGAGAAACTTTGATAACATTAAA
TAG
Found at i:7254769 original size:22 final size:22
Alignment explanation
Indices: 7254744--7254785 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7254734 AATACATTAG
7254744 ATTATTCATCTATAATTTCATC
1 ATTATTCATCTATAATTTCATC
*
7254766 ATTATTCATCTCTAATTTCA
1 ATTATTCATCTATAATTTCA
7254786 ATAGTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTATTCATCTATAATTTCATC
Found at i:7257663 original size:18 final size:19
Alignment explanation
Indices: 7257632--7257667 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7257622 TACCTAACCT
7257632 TCAAGCTTGGATGAATAGC
1 TCAAGCTTGGATGAATAGC
*
7257651 TCAA-CTTGTATGAATAG
1 TCAAGCTTGGATGAATAG
7257668 ATCTTTATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (19 bp):
TCAAGCTTGGATGAATAGC
Found at i:7263893 original size:97 final size:96
Alignment explanation
Indices: 7263778--7263975 Score: 342
Period size: 97 Copynumber: 2.1 Consensus size: 96
7263768 ATAAATTTTT
*
7263778 CTAATCACTTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAAATCAAATG
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTT-AAAAAATCAAATG
*
7263843 TATTTTTAAATTCAAATTATTATTTAATTACA
65 TAATTTTAAATTCAAATTATTATTTAATTACA
*
7263875 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATTT
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATGT
**
7263940 AATTTTAAATTTGAATTATTATTTAATTACA
66 AATTTTAAATTCAAATTATTATTTAATTACA
7263971 CTAAT
1 CTAAT
7263976 TTATCATGAT
Statistics
Matches: 96, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
96 46 0.48
97 50 0.52
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (96 bp):
CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATGT
AATTTTAAATTCAAATTATTATTTAATTACA
Found at i:7268275 original size:40 final size:41
Alignment explanation
Indices: 7268223--7268316 Score: 111
Period size: 40 Copynumber: 2.3 Consensus size: 41
7268213 AAAGCACTGT
* * *
7268223 AAAAGG-AGAAGCATTAGCGGCACTTTTCCTA-ATGCGCCGC
1 AAAAGGTA-AAGCATTAGCGGCACTTTACCAACAAGCGCCGC
**
7268263 AAAAGGTAAAGCATTAGCGGTGCTTTACCAACAAGCGCCGC
1 AAAAGGTAAAGCATTAGCGGCACTTTACCAACAAGCGCCGC
*
7268304 TAAAGGTAAAGCA
1 AAAAGGTAAAGCA
7268317 AGCGCCGCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 25 0.54
41 21 0.46
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (41 bp):
AAAAGGTAAAGCATTAGCGGCACTTTACCAACAAGCGCCGC
Found at i:7268407 original size:41 final size:41
Alignment explanation
Indices: 7268362--7268539 Score: 166
Period size: 41 Copynumber: 4.3 Consensus size: 41
7268352 AAGTCAGGTT
** *
7268362 ATTAGCGACGCTTAGACACAAGCGCCGCTAATGATCGGGTC
1 ATTAGCGACGCTTACCCACAAGCGCCGCTAAAGATCGGGTC
*
7268403 ATTAGCGGCGCTT-CACCACAAGCGCCGCTAAA-AGT-GGAGTC
1 ATTAGCGACGCTTAC-CCACAAGCGCCGCTAAAGA-TCGG-GTC
* * * * **
7268444 ATTAGCCACGCTTTCCCACAAACGCCGCTAAAGGTCTAGTC
1 ATTAGCGACGCTTACCCACAAGCGCCGCTAAAGATCGGGTC
* * *
7268485 ATTAGC-AGCGCTTTCCCACAAGCGCCGCTAAAGTTCTGGTC
1 ATTAGCGA-CGCTTACCCACAAGCGCCGCTAAAGATCGGGTC
*
7268526 ATTAGCGGCGCTTA
1 ATTAGCGACGCTTA
7268540 TATAGAAAGT
Statistics
Matches: 114, Mismatches: 15, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
40 4 0.04
41 109 0.96
42 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (41 bp):
ATTAGCGACGCTTACCCACAAGCGCCGCTAAAGATCGGGTC
Found at i:7268448 original size:82 final size:82
Alignment explanation
Indices: 7268362--7268516 Score: 204
Period size: 82 Copynumber: 1.9 Consensus size: 82
7268352 AAGTCAGGTT
* * * * * *
7268362 ATTAGCGACGCTTAGACACAAGCGCCGCTAATGATCGGGTCATTAGCGGCGC-TTCACCACAAGC
1 ATTAGCCACGCTTACACACAAACGCCGCTAAAGATCGAGTCATTAGCAGCGCTTTC-CCACAAGC
7268426 GCCGCTAAAAGTGGAGTC
65 GCCGCTAAAAGTGGAGTC
* * * *
7268444 ATTAGCCACGCTTTCCCACAAACGCCGCTAAAGGTCTAGTCATTAGCAGCGCTTTCCCACAAGCG
1 ATTAGCCACGCTTACACACAAACGCCGCTAAAGATCGAGTCATTAGCAGCGCTTTCCCACAAGCG
7268509 CCGCTAAA
66 CCGCTAAA
7268517 GTTCTGGTCA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
82 59 0.95
83 3 0.05
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (82 bp):
ATTAGCCACGCTTACACACAAACGCCGCTAAAGATCGAGTCATTAGCAGCGCTTTCCCACAAGCG
CCGCTAAAAGTGGAGTC
Found at i:7268602 original size:42 final size:41
Alignment explanation
Indices: 7268422--7268638 Score: 155
Period size: 41 Copynumber: 5.3 Consensus size: 41
7268412 GCTTCACCAC
* * * *
7268422 AAGCGCCGCTAAAAGTGGAGTCATTAGCCA-CGCTTTCCCACA-
1 AAGCGCCGCTAAAGGT-CAGTCATTAG-CAGCGCTTTTCTA-AT
** *
7268464 AA-CGCCGCTAAAGGTCTAGTCATTAGCAGCGC-TTTCCCAC
1 AAGCGCCGCTAAAGGTC-AGTCATTAGCAGCGCTTTTCTAAT
* * * * *
7268504 AAGCGCCGCTAAAGTTCTGGTCATTAGCGGCGCTTATATAGA-
1 AAGCGCCGCTAAAGGTC-AGTCATTAGCAGCGCTTTTCTA-AT
* * *
7268546 AAGTGCCGGC-AAAGGTCAGGTTATTAGCGGCGCTTTTCTAAT
1 AAGCGCC-GCTAAAGGTCA-GTCATTAGCAGCGCTTTTCTAAT
7268588 AAGCGCCGCTAAAGGT--GTGCATTAGCAGCGCTTTTCT-AT
1 AAGCGCCGCTAAAGGTCAGT-CATTAGCAGCGCTTTTCTAAT
7268627 AAGCGCCGCTAA
1 AAGCGCCGCTAA
7268639 TTTATTTAAA
Statistics
Matches: 144, Mismatches: 20, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
39 17 0.12
40 24 0.17
41 54 0.38
42 46 0.32
43 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (41 bp):
AAGCGCCGCTAAAGGTCAGTCATTAGCAGCGCTTTTCTAAT
Found at i:7269720 original size:43 final size:43
Alignment explanation
Indices: 7269672--7269773 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 43
7269662 CACCCCCAGA
* * *
7269672 CCGCAGAACC-TTTTCTGTTTCCCTCACTCCGTTGCCTCTTCAC
1 CCGCAGAACCGCTTT-TGTTCCCCTCACTCCGTTCCCTCTTCAC
*
7269715 CCGCAGAACTCGCTTTTGTTCCCCTTACTCCGTTCCCTCTTCAC
1 CCGCAGAAC-CGCTTTTGTTCCCCTCACTCCGTTCCCTCTTCAC
*
7269759 CCCCAGAACCCGCTT
1 CCGCAGAA-CCGCTT
7269774 CTCGAGCTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 9 0.18
44 38 0.75
45 4 0.08
ACGTcount: A:0.13, C:0.44, G:0.12, T:0.31
Consensus pattern (43 bp):
CCGCAGAACCGCTTTTGTTCCCCTCACTCCGTTCCCTCTTCAC
Found at i:7269755 original size:44 final size:44
Alignment explanation
Indices: 7269687--7269773 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
7269677 GAACCTTTTC
* * * *
7269687 TGTTTCCCTCACTCCGTTGCCTCTTCACCCGCAGAACTCGCTTT
1 TGTTCCCCTCACTCCGTTCCCTCTTCACCCCCAGAACCCGCTTT
*
7269731 TGTTCCCCTTACTCCGTTCCCTCTTCACCCCCAGAACCCGCTT
1 TGTTCCCCTCACTCCGTTCCCTCTTCACCCCCAGAACCCGCTT
7269774 CTCGAGCTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.11, C:0.45, G:0.11, T:0.32
Consensus pattern (44 bp):
TGTTCCCCTCACTCCGTTCCCTCTTCACCCCCAGAACCCGCTTT
Found at i:7272442 original size:18 final size:18
Alignment explanation
Indices: 7272396--7273462 Score: 202
Period size: 18 Copynumber: 57.3 Consensus size: 18
7272386 TAAAAGATTT
7272396 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* ** *
7272414 AAGTAAATAATTACATTA
1 AATTATTTAATTATATTA
* *
7272432 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7272451 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
*
7272470 ACATTA-TCAATTA-ATTA
1 A-ATTATTTAATTATATTA
* *
7272487 AA-TATTTAAGTTAAAAGATTT
1 AATTATTTAA-TT---ATATTA
7272508 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* ** *
7272526 AAGTAAATAATTACATTA
1 AATTATTTAATTATATTA
* *
7272544 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7272563 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7272582 ACAATA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
*
7272599 AA-TATTTAAGTTAAAATATTT
1 AATTATTTAA-TT---ATATTA
7272620 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* ** *
7272638 AAGTAAATAATTACATTA
1 AATTATTTAATTATATTA
* *
7272656 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7272675 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7272694 ACAATA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
*
7272711 AA-TATTTAATTATAAAGATTT
1 AATTATTTAATTAT----ATTA
*
7272732 AATTATTTAATTATATCA
1 AATTATTTAATTATATTA
* **
7272750 AAGTAAATAATTATATTA
1 AATTATTTAATTATATTA
*
7272768 AATTATTTAATGCTGT-TTA
1 AATTATTTAAT--TATATTA
7272787 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7272806 ACAGTA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
* *
7272823 AA-TATTTAAGTTAAAAGATTT
1 AATTATTTAA-TT---ATATTA
7272844 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* ** *
7272862 AAGTAAATAATTACATTA
1 AATTATTTAATTATATTA
* *
7272880 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7272899 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7272918 ACAATA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
* * *
7272935 AA-TATTTAAGCTAAAAGATTT
1 AATTATTTAA--T--TATATTA
7272956 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* ** *
7272974 AAGTAAATAATTACATTA
1 AATTATTTAATTATATTA
* *
7272992 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7273011 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7273030 ACAATA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
* * * *
7273047 AA-TGTTTAAGCTAAAAGATTT
1 AATTATTTAA--T--TATATTA
7273068 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* **
7273086 AAGTAAATAATTATATTA
1 AATTATTTAATTATATTA
* * *
7273104 AATTATTTAATGATGTTT
1 AATTATTTAATTATATTA
* * *
7273122 AATTATGTATTTAGTTATAA
1 AATTATTTAATTA--TATTA
* *
7273142 ACAGTA-TCAATTA-ATTA
1 A-ATTATTTAATTATATTA
* *
7273159 AA-TATTTAAGTTAAAAGATTT
1 AATTATTTAA-TT---ATATTA
7273180 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* **
7273198 AACTAAATAATTATATTA
1 AATTATTTAATTATATTA
* *
7273216 AATTATTTAATCATGTTTA
1 AATTATTTAATTAT-ATTA
7273235 ATTATGTATTTAATTATA--A
1 A--AT-TATTTAATTATATTA
* **
7273254 ACACTA-TCGATTA-ATTA
1 A-ATTATTTAATTATATTA
* *
7273271 AA-TATTTAAGTTAAAAGATTT
1 AATTATTTAA-TT---ATATTA
*
7273292 AACTATTTAATTATATTA
1 AATTATTTAATTATATTA
* **
7273310 AACTAAATAATTATATTA
1 AATTATTTAATTATATTA
* * *
7273328 AATTATTTAATCATGTTT
1 AATTATTTAATTATATTA
*
7273346 AATTATTTATTTA-ATTA
1 AATTATTTAATTATATTA
** *
7273363 TAAACACTATTGATTA-ATTA
1 -AATTA-T-TTAATTATATTA
* *
7273383 AA-TATTTAAGTTAAAAAATTT
1 AATTATTTAA-TT---ATATTA
7273404 AATTATTTAATTATATTA
1 AATTATTTAATTATATTA
* **
7273422 AAGTAAATAATTATATTA
1 AATTATTTAATTATATTA
*
7273440 AATTATTTAATTATATTT
1 AATTATTTAATTATATTA
7273458 AATTA
1 AATTA
7273463 ACTATTTAAT
Statistics
Matches: 741, Mismatches: 196, Indels: 224
0.64 0.17 0.19
Matches are distributed among these distances:
15 22 0.03
16 68 0.09
17 47 0.06
18 321 0.43
19 45 0.06
20 30 0.04
21 74 0.10
22 134 0.18
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTATTTAATTATATTA
Found at i:7272488 original size:112 final size:112
Alignment explanation
Indices: 7272341--7273477 Score: 1965
Period size: 112 Copynumber: 10.2 Consensus size: 112
7272331 ATTAAATAAG
*
7272341 TATGTATTTAATTATAAACAGTATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
7272406 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
* *
7272453 TATGTATTTAATTATAAACATTATCAATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
7272518 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
*
7272565 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAATATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
7272630 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
7272677 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAA-TTATAAAGATTTAATTATTTA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTA-AAAGATTTAATTATTTA
* *
7272741 ATTATATCAAAGTAAATAATTATATTAAATTATTTAATGC-TGTTTAAT
65 ATTATATTAAAGTAAATAATTACATTAAATTATTTAAT-CATGTTTAAT
*
7272789 TATGTATTTAATTATAAACAGTATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
7272854 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
*
7272901 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGCTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
7272966 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
* *
7273013 TATGTATTTAATTATAAACAATATCGATTAATTAAATGTTTAAGCTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
* *
7273078 TTATATTAAAGTAAATAATTATATTAAATTATTTAATGATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
* * *
7273125 TATGTATTTAGTTATAAACAGTATCAATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
* *
7273190 TTATATTAAACTAAATAATTATATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
* *
7273237 TATGTATTTAATTATAAACACTATCGATTAATTAAATATTTAAGTTAAAAGATTTAACTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
* *
7273302 TTATATTAAACTAAATAATTATATTAAATTATTTAATCATGTTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
* * * *
7273349 TATTTATTTAATTATAAACACTATTGATTAATTAAATATTTAAGTTAAAAAATTTAATTATTTAA
1 TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
* * *
7273414 TTATATTAAAGTAAATAATTATATTAAATTATTTAATTATATTTAAT
66 TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
**
7273461 TAACTATTTAATT-TAAA
1 TATGTATTTAATTATAAA
7273478 ATGTGGTCTA
Statistics
Matches: 985, Mismatches: 36, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
111 8 0.01
112 973 0.99
113 4 0.00
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (112 bp):
TATGTATTTAATTATAAACAATATCGATTAATTAAATATTTAAGTTAAAAGATTTAATTATTTAA
TTATATTAAAGTAAATAATTACATTAAATTATTTAATCATGTTTAAT
Found at i:7273445 original size:10 final size:9
Alignment explanation
Indices: 7273402--7273462 Score: 56
Period size: 8 Copynumber: 6.8 Consensus size: 9
7273392 GTTAAAAAAT
7273402 TTAATTAT-
1 TTAATTATA
7273410 TTAATTATA
1 TTAATTATA
*
7273419 TTAAAGTA-A
1 TT-AATTATA
*
7273428 ATAATTATA
1 TTAATTATA
7273437 TTAAATTAT-
1 TT-AATTATA
7273446 TTAATTATA
1 TTAATTATA
7273455 TTTAATTA
1 -TTAATTA
7273463 ACTATTTAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 18 0.42
9 8 0.19
10 17 0.40
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (9 bp):
TTAATTATA
Found at i:7273521 original size:18 final size:18
Alignment explanation
Indices: 7273490--7273576 Score: 66
Period size: 22 Copynumber: 4.4 Consensus size: 18
7273480 GTGGTCTAAA
7273490 TAATTATATATAATTATT
1 TAATTATATATAATTATT
* *
7273508 TAATTTTATTTAATTATT
1 TAATTATATATAATTATT
* *
7273526 TAATTGAAAAGATTTAATTATT
1 TAATT----ATATATAATTATT
7273548 TAATTATATTAACTTAATTATT
1 TAATTATA-T-A--TAATTATT
7273570 TAATTAT
1 TAATTAT
7273577 TTAATTAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
18 23 0.42
19 1 0.02
22 31 0.56
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (18 bp):
TAATTATATATAATTATT
Found at i:7273524 original size:8 final size:8
Alignment explanation
Indices: 7273490--7273583 Score: 65
Period size: 8 Copynumber: 11.8 Consensus size: 8
7273480 GTGGTCTAAA
7273490 TAATTATAT
1 TAATTAT-T
7273499 ATAATTATT
1 -TAATTATT
7273508 TAATTTTATT
1 TAA--TTATT
7273518 TAATTATT
1 TAATTATT
7273526 TAATTGA--
1 TAATT-ATT
**
7273533 -AAAGATT
1 TAATTATT
7273540 TAATTATT
1 TAATTATT
7273548 TAATTA--
1 TAATTATT
*
7273554 T-ATTAACT
1 TAATT-ATT
7273562 TAATTATT
1 TAATTATT
7273570 TAATTATT
1 TAATTATT
7273578 TAATTA
1 TAATTA
7273584 ATAAAAACAG
Statistics
Matches: 69, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
5 4 0.06
6 4 0.06
8 41 0.59
9 5 0.07
10 15 0.22
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.55
Consensus pattern (8 bp):
TAATTATT
Found at i:7273549 original size:30 final size:30
Alignment explanation
Indices: 7273513--7273583 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
7273503 TTATTTAATT
7273513 TTATTTAATTAT-TTAA-TTGAAAAGATTTAA
1 TTATTTAATTATATTAACTT--AAAGATTTAA
**
7273543 TTATTTAATTATATTAACTTAATTATTTAA
1 TTATTTAATTATATTAACTTAAAGATTTAA
7273573 TTATTTAATTA
1 TTATTTAATTA
7273584 ATAAAAACAG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
30 31 0.84
31 4 0.11
32 2 0.05
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (30 bp):
TTATTTAATTATATTAACTTAAAGATTTAA
Found at i:7273564 original size:22 final size:20
Alignment explanation
Indices: 7273500--7273585 Score: 79
Period size: 22 Copynumber: 4.2 Consensus size: 20
7273490 TAATTATATA
*
7273500 TAATTATTTAA-T-TTTATT
1 TAATTATTTAATTATTTAAT
**
7273518 TAATTATTTAATTGA-AAAGATT
1 TAATTATTTAATT-ATTTA-A-T
7273540 TAATTATTTAATTATATTAACT
1 TAATTATTTAATTAT-TTAA-T
7273562 TAATTATTTAATTATTTAAT
1 TAATTATTTAATTATTTAAT
7273582 TAAT
1 TAAT
7273586 AAAAACAGCC
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
18 11 0.20
19 1 0.02
20 6 0.11
21 5 0.09
22 31 0.56
23 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (20 bp):
TAATTATTTAATTATTTAAT
Found at i:7273642 original size:33 final size:32
Alignment explanation
Indices: 7273605--7273671 Score: 107
Period size: 33 Copynumber: 2.1 Consensus size: 32
7273595 CCAAATATTT
* *
7273605 AAGTAAAATGTTGTCACTAATATATGTATTTTA
1 AAGTAAAATGTTGTCACCAATATATAT-TTTTA
7273638 AAGTAAAATGTTGTCACCAATATATATTTTTA
1 AAGTAAAATGTTGTCACCAATATATATTTTTA
7273670 AA
1 AA
7273672 TTTAAATCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 7 0.22
33 25 0.78
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.40
Consensus pattern (32 bp):
AAGTAAAATGTTGTCACCAATATATATTTTTA
Found at i:7279206 original size:66 final size:66
Alignment explanation
Indices: 7279100--7279257 Score: 271
Period size: 66 Copynumber: 2.4 Consensus size: 66
7279090 GCAAATTGCT
* *
7279100 CAACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAGGCTCAAAAAACATATGATGAACTCCACCT
1 CAACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAAGCTCAAAAAAAATATGATGAACTCCACCT
7279165 A
66 A
*
7279166 CAACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAAGCTCAAAAAAAATATGATGAACTCTACCT
1 CAACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAAGCTCAAAAAAAATATGATGAACTCCACCT
7279231 A
66 A
* *
7279232 CAACTTAAAGTGGAGGCAGCAGCGAG
1 CAACTTAAAGAGGAGGCTGCAGCGAG
7279258 GCAAGCGGAG
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 87 1.00
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (66 bp):
CAACTTAAAGAGGAGGCTGCAGCGAGAGAAGCAGAAGCTCAAAAAAAATATGATGAACTCCACCT
A
Found at i:7279260 original size:11 final size:11
Alignment explanation
Indices: 7279244--7279281 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
7279234 ACTTAAAGTG
7279244 GAGGCAGCAGC
1 GAGGCAGCAGC
7279255 GAGGCA--AGC
1 GAGGCAGCAGC
7279264 GGAGGCAGCAGC
1 -GAGGCAGCAGC
7279276 GAGGCA
1 GAGGCA
7279282 AGCGAAGGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
9 3 0.12
10 6 0.25
11 12 0.50
12 3 0.12
ACGTcount: A:0.29, C:0.24, G:0.47, T:0.00
Consensus pattern (11 bp):
GAGGCAGCAGC
Found at i:7279269 original size:21 final size:21
Alignment explanation
Indices: 7279243--7279295 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7279233 AACTTAAAGT
7279243 GGAGGCAGCAGCGAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
7279264 GGAGGCAGCAGCGAGGCAAGC
1 GGAGGCAGCAGCGAGGCAAGC
* *
7279285 GAAGGAAGCAG
1 GGAGGCAGCAG
7279296 AGGCTACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.32, C:0.21, G:0.47, T:0.00
Consensus pattern (21 bp):
GGAGGCAGCAGCGAGGCAAGC
Found at i:7279523 original size:15 final size:15
Alignment explanation
Indices: 7279500--7279532 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
7279490 ATTTGAAGTT
*
7279500 ATTGTTTAGATTTGA
1 ATTGGTTAGATTTGA
7279515 ATTGGTTAGATTTGA
1 ATTGGTTAGATTTGA
7279530 ATT
1 ATT
7279533 TACAAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
ATTGGTTAGATTTGA
Found at i:7279673 original size:34 final size:36
Alignment explanation
Indices: 7279630--7279705 Score: 129
Period size: 34 Copynumber: 2.2 Consensus size: 36
7279620 CGCTGCTAAA
*
7279630 TTTAGCATAAGCGCCGCTATTTTTAGCGGCGTT-T-
1 TTTAGCATAAACGCCGCTATTTTTAGCGGCGTTATC
7279664 TTTAGCATAAACGCCGCTATTTTTAGCGGCGTTATC
1 TTTAGCATAAACGCCGCTATTTTTAGCGGCGTTATC
7279700 TTTAGC
1 TTTAGC
7279706 GGCATTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 32 0.82
35 1 0.03
36 6 0.15
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (36 bp):
TTTAGCATAAACGCCGCTATTTTTAGCGGCGTTATC
Found at i:7282971 original size:72 final size:72
Alignment explanation
Indices: 7282871--7283028 Score: 280
Period size: 72 Copynumber: 2.2 Consensus size: 72
7282861 GGAAGTAGGG
* * * *
7282871 ATTGGACCAGAGATTGAGTTAGTAGCCAAACTCAATAAGTTGAGAGATTTAAGCATTCCTATCTC
1 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
7282936 TCGAGGT
66 TCGAGGT
7282943 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
1 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
7283008 TCGAGGT
66 TCGAGGT
7283015 ATTGAACCAGAAAT
1 ATTGAACCAGAAAT
7283029 GGCATTTCTG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 82 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (72 bp):
ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
TCGAGGT
Found at i:7285294 original size:19 final size:19
Alignment explanation
Indices: 7285270--7285315 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7285260 TACAAAAACT
*
7285270 TACTAATTGTCTTAACTA-A
1 TACTAACTGTCTTAAC-AGA
*
7285289 TACTAACTGTTTTAACAGA
1 TACTAACTGTCTTAACAGA
7285308 TACTAACT
1 TACTAACT
7285316 ACCTAACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TACTAACTGTCTTAACAGA
Found at i:7288896 original size:21 final size:21
Alignment explanation
Indices: 7288857--7288896 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7288847 CTCTTGAAGC
*
7288857 ACCTCTTGCTCCCCTAAAATA
1 ACCTCTTGCTCCCCGAAAATA
* *
7288878 ACCTCTTGTTCCTCGAAAA
1 ACCTCTTGCTCCCCGAAAA
7288897 CCACCTCTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.35, G:0.07, T:0.30
Consensus pattern (21 bp):
ACCTCTTGCTCCCCGAAAATA
Found at i:7289885 original size:19 final size:19
Alignment explanation
Indices: 7289861--7289906 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7289851 TACAAAAACT
*
7289861 TACTAACTGTCTTAACTAA
1 TACTAACTGTCTTAACAAA
*
7289880 TACTAACTGTTTTAACAAA
1 TACTAACTGTCTTAACAAA
7289899 TACTAACT
1 TACTAACT
7289907 ACCTAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (19 bp):
TACTAACTGTCTTAACAAA
Found at i:7292944 original size:17 final size:17
Alignment explanation
Indices: 7292904--7292979 Score: 73
Period size: 17 Copynumber: 4.5 Consensus size: 17
7292894 AAATAAGACA
7292904 TAAATTTAGTTTTAAA-T
1 TAAATTTA-TTTTAAATT
* *
7292921 TAGATTTATTTTGAATT
1 TAAATTTATTTTAAATT
*** *
7292938 TAAATTTGCATAAAATT
1 TAAATTTATTTTAAATT
*
7292955 TGAATTTATTTTAAATT
1 TAAATTTATTTTAAATT
7292972 TAAATTTA
1 TAAATTTA
7292980 AAATTAAATT
Statistics
Matches: 44, Mismatches: 14, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
16 6 0.14
17 38 0.86
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (17 bp):
TAAATTTATTTTAAATT
Found at i:7294980 original size:29 final size:29
Alignment explanation
Indices: 7294925--7295282 Score: 142
Period size: 29 Copynumber: 12.7 Consensus size: 29
7294915 GCTTATGGGT
*
7294925 CCCCGAACTTT-CCAAAATT-TCATTTTTAA
1 CCCCGAA-TTTCCCAAAATTACCA-TTTTAA
* *
7294954 CCTCG-ATTTCATCAAAATTACCATTTT-A
1 CCCCGAATTTC-CCAAAATTACCATTTTAA
* *
7294982 CCCTCGAACTTCTCAAAA-TACCA-TTT-A
1 CCC-CGAATTTCCCAAAATTACCATTTTAA
*
7295009 CCCCTGAATTTCCCCAAATT-CCATTTTTAA
1 CCCC-GAATTTCCCAAAATTACCA-TTTTAA
* *
7295039 CCCCG-ATTTCCCGAAATTACCATTTTAC
1 CCCCGAATTTCCCAAAATTACCATTTTAA
*
7295067 CCCCGAA-----C----TTACCATTTTAC
1 CCCCGAATTTCCCAAAATTACCATTTTAA
* *
7295087 CCCCGAACTTT-TCAAAATT-CTATTTTTAA
1 CCCCGAA-TTTCCCAAAATTACCA-TTTTAA
* ** * *
7295116 CCCCGAGTTAACCAAAATTACTATTTTAC
1 CCCCGAATTTCCCAAAATTACCATTTTAA
7295145 CCCCGAACTTT-CCAAAATT-CCATTTTTAA
1 CCCCGAA-TTTCCCAAAATTACCA-TTTTAA
* * *
7295174 CCCCGATTTTACCAAAAATTACCGTTTT-A
1 CCCCGAATTT-CCCAAAATTACCATTTTAA
*
7295203 CCCTCGAACTTT-CTAAAA-T-CCTATTTTTAA
1 CCC-CGAA-TTTCCCAAAATTACC-A-TTTTAA
**
7295233 CCCCG-ATTTCATTGAAAATTACCATTTT-A
1 CCCCGAATTTC--CCAAAATTACCATTTTAA
**
7295262 CCCTAAATTTTCCCAAAATTA
1 CCCCGAA-TTTCCCAAAATTA
7295283 ATTTTTTACC
Statistics
Matches: 256, Mismatches: 32, Indels: 82
0.69 0.09 0.22
Matches are distributed among these distances:
20 19 0.07
24 1 0.00
25 1 0.00
26 1 0.00
27 28 0.11
28 43 0.17
29 107 0.42
30 43 0.17
31 11 0.04
32 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.04, T:0.35
Consensus pattern (29 bp):
CCCCGAATTTCCCAAAATTACCATTTTAA
Done.