Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 27 of 163
Found at i:7295026 original size:28 final size:27
Alignment explanation
Indices: 7294948--7295069 Score: 79
Period size: 27 Copynumber: 4.3 Consensus size: 27
7294938 AAAATTTCAT
* **
7294948 TTTTAACCTCGATTTCATCAAAATTACCA
1 TTTT-ACCCCGATTTCCCCAAAA-TACCA
* *
7294977 TTTTACCCTCGAACTT-CTCAAAATACCA
1 TTTTACCC-CG-ATTTCCCCAAAATACCA
*
7295005 -TTTACCCCTGAATTTCCCC-AAATTCCA
1 TTTTACCCC-G-ATTTCCCCAAAATACCA
* *
7295032 TTTTTAACCCCGATTTCCCGAAATTACCA
1 -TTTT-ACCCCGATTTCCCCAAAATACCA
7295061 TTTTACCCC
1 TTTTACCCC
7295070 CGAACTTACC
Statistics
Matches: 76, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
26 1 0.01
27 24 0.32
28 21 0.28
29 22 0.29
30 8 0.11
ACGTcount: A:0.29, C:0.32, G:0.04, T:0.35
Consensus pattern (27 bp):
TTTTACCCCGATTTCCCCAAAATACCA
Found at i:7295027 original size:27 final size:26
Alignment explanation
Indices: 7294972--7295069 Score: 81
Period size: 27 Copynumber: 3.5 Consensus size: 26
7294962 TCATCAAAAT
* * *
7294972 TACCATTTTACCCTCGAACTTCTCAAAA
1 TACCATTTTACCC-CG-ATTTCCCCAAA
7295000 TACCA-TTTACCCCTGAATTTCCCCAAA
1 TACCATTTTACCCC-G-ATTTCCCCAAA
* *
7295027 TTCCATTTTTAACCCCGATTTCCCGAAA
1 TACCA-TTTT-ACCCCGATTTCCCCAAA
7295055 TTACCATTTTACCCC
1 -TACCATTTTACCCC
7295070 CGAACTTACC
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 26 0.44
28 19 0.32
29 8 0.14
30 5 0.08
ACGTcount: A:0.28, C:0.35, G:0.04, T:0.34
Consensus pattern (26 bp):
TACCATTTTACCCCGATTTCCCCAAA
Found at i:7295094 original size:20 final size:20
Alignment explanation
Indices: 7295048--7295096 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7295038 ACCCCGATTT
*
7295048 CCCGAAATTACCATTTTACC
1 CCCGAACTTACCATTTTACC
7295068 CCCGAACTTACCATTTTACC
1 CCCGAACTTACCATTTTACC
7295088 CCCGAACTT
1 CCCGAACTT
7295097 TTCAAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.27, C:0.39, G:0.06, T:0.29
Consensus pattern (20 bp):
CCCGAACTTACCATTTTACC
Found at i:7295221 original size:59 final size:58
Alignment explanation
Indices: 7295075--7295264 Score: 240
Period size: 59 Copynumber: 3.2 Consensus size: 58
7295065 ACCCCCGAAC
* *
7295075 TTACCATTTTACCCCCGAACTTT-TCAAAATTCTATTTTTAACCCCGAGTTAACCAAAA
1 TTACCATTTTACCCCCGAACTTTCT-AAAATTCCATTTTTAACCCCGATTTAACCAAAA
* * *
7295133 TTACTATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTTACCAAAAA
1 TTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTAACC-AAAA
* * ***
7295192 TTACCGTTTTACCCTCGAACTTTCTAAAA-TCCTATTTTTAACCCCGATTTCATTGAAAA
1 TTACCATTTTACCCCCGAACTTTCTAAAATTCC-ATTTTTAACCCCGATTT-AACCAAAA
7295251 TTACCATTTTACCC
1 TTACCATTTTACCC
7295265 TAAATTTTCC
Statistics
Matches: 114, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
58 51 0.45
59 63 0.55
ACGTcount: A:0.31, C:0.28, G:0.05, T:0.37
Consensus pattern (58 bp):
TTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTAACCAAAA
Found at i:7297241 original size:13 final size:13
Alignment explanation
Indices: 7297223--7297247 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7297213 ATAATAATTA
7297223 TAATTTAATTAAT
1 TAATTTAATTAAT
7297236 TAATTTAATTAA
1 TAATTTAATTAA
7297248 CTTTTACCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TAATTTAATTAAT
Found at i:7299900 original size:95 final size:96
Alignment explanation
Indices: 7299785--7299980 Score: 349
Period size: 95 Copynumber: 2.1 Consensus size: 96
7299775 ATAAATTTTT
*
7299785 CTAATCACTTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTAAAAAAAT-AAATGT
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTAAAAAAATCAAATGT
7299849 ATTTTTAAATTTAAATTATTATTTAATTACA
66 ATTTTTAAATTTAAATTATTATTTAATTACA
* *
7299880 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATTT
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTAAAAAAATCAAATGT
*
7299945 ATTTTTAAATTTGAATTATTATTTAATTACA
66 ATTTTTAAATTTAAATTATTATTTAATTACA
7299976 CTAAT
1 CTAAT
7299981 TTATCATGAT
Statistics
Matches: 96, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
95 56 0.58
96 40 0.42
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (96 bp):
CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTAAAAAAATCAAATGT
ATTTTTAAATTTAAATTATTATTTAATTACA
Found at i:7305588 original size:19 final size:19
Alignment explanation
Indices: 7305564--7305609 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7305554 TCTGTTAGGT
7305564 AGTTAGTATCT-GTTAAAAC
1 AGTTAGTAT-TAGTTAAAAC
*
7305583 AGTTAGTATTAGTTAAGAC
1 AGTTAGTATTAGTTAAAAC
*
7305602 AATTAGTA
1 AGTTAGTA
7305610 AGTTTTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (19 bp):
AGTTAGTATTAGTTAAAAC
Found at i:7307935 original size:72 final size:72
Alignment explanation
Indices: 7307851--7308008 Score: 280
Period size: 72 Copynumber: 2.2 Consensus size: 72
7307841 CAGAAATGCC
* *
7307851 ATTTCTGGTTCAATACCTCGAGAGATAGGAATGCTTAAATCTCTCCACTTATTGAGTTTGGCTGC
1 ATTTCTGGTTCAATACCTCGAGAGATAGGAATGCTTAAATCTCTCAACTTATTGAGTTTGGCTAC
7307916 TAACTCA
66 TAACTCA
7307923 ATTTCTGGTTCAATACCTCGAGAGATAGGAATGCTTAAATCTCTCAACTTATTGAGTTTGGCTAC
1 ATTTCTGGTTCAATACCTCGAGAGATAGGAATGCTTAAATCTCTCAACTTATTGAGTTTGGCTAC
7307988 TAACTCA
66 TAACTCA
* *
7307995 ATCTCTGGTCCAAT
1 ATTTCTGGTTCAAT
7308009 CCCTACTTCC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 82 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (72 bp):
ATTTCTGGTTCAATACCTCGAGAGATAGGAATGCTTAAATCTCTCAACTTATTGAGTTTGGCTAC
TAACTCA
Found at i:7315382 original size:96 final size:96
Alignment explanation
Indices: 7315276--7315472 Score: 351
Period size: 96 Copynumber: 2.1 Consensus size: 96
7315266 ATCATGATAA
7315276 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTGA-TTTTTTAACTTTATGAATAA
1 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTT-ATTTTTTTAACTTTATGAATAA
*
7315340 TAATATACTAATTTTAGTTTTTATTGAAATTG
65 TAATATACTAATTTTAGTTTTTATTGAAAGTG
* *
7315372 ATTAGTGTAATTAAATAATAATTTAAATTTAAAAATACATTTATTTTTTTAACTTTATGAATAAT
1 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTATTTTTTTAACTTTATGAATAAT
7315437 AATATACTAATTTTAGTTTTTATTGAAAGTG
66 AATATACTAATTTTAGTTTTTATTGAAAGTG
7315468 ATTAG
1 ATTAG
7315473 AAAAATTTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 1 0.01
96 96 0.99
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (96 bp):
ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTATTTTTTTAACTTTATGAATAAT
AATATACTAATTTTAGTTTTTATTGAAAGTG
Found at i:7318519 original size:24 final size:24
Alignment explanation
Indices: 7318492--7318540 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7318482 GGTAATAAGG
7318492 TATGTATATATGCTTTATATCTAC
1 TATGTATATATGCTTTATATCTAC
*
7318516 TATGTATATATGTTTTATATCTAC
1 TATGTATATATGCTTTATATCTAC
7318540 T
1 T
7318541 CTTTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.53
Consensus pattern (24 bp):
TATGTATATATGCTTTATATCTAC
Found at i:7323568 original size:96 final size:96
Alignment explanation
Indices: 7323462--7323658 Score: 351
Period size: 96 Copynumber: 2.1 Consensus size: 96
7323452 ATCATGATAA
7323462 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTGA-TTTTTTAACTTTATGAATAA
1 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTT-ATTTTTTTAACTTTATGAATAA
*
7323526 TAATATACTAATTTTAGTTTTTATTGAAATTG
65 TAATATACTAATTTTAGTTTTTATTGAAAGTG
* *
7323558 ATTAGTGTAATTAAATAATAATTTAAATTTAAAAATACATTTATTTTTTTAACTTTATGAATAAT
1 ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTATTTTTTTAACTTTATGAATAAT
7323623 AATATACTAATTTTAGTTTTTATTGAAAGTG
66 AATATACTAATTTTAGTTTTTATTGAAAGTG
7323654 ATTAG
1 ATTAG
7323659 AAAAATTTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 1 0.01
96 96 0.99
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (96 bp):
ATTAGTGTAATTAAATAATAATTCAAATTTAAAAATAAATTTATTTTTTTAACTTTATGAATAAT
AATATACTAATTTTAGTTTTTATTGAAAGTG
Found at i:7328321 original size:29 final size:29
Alignment explanation
Indices: 7328230--7328545 Score: 142
Period size: 29 Copynumber: 11.2 Consensus size: 29
7328220 TTTAATGAAA
*
7328230 TCGGGGTTAAAAATAGG-ATTTTAGAAAGT
1 TCGGGGTTAAAAAT-GGAATTTTGGAAAGT
* *
7328259 TCGAGGG-T-AAAACGGTAATTTTTGGTAAA-A
1 TCG-GGGTTAAAAATGG-AA-TTTTGG-AAAGT
*
7328289 TCGGGATTAAAAATGGAATTTTGGAAAGT
1 TCGGGGTTAAAAATGGAATTTTGGAAAGT
* * * *
7328318 TCGGGGGT-AAAATAGTAATTTTGGTTAA-C
1 TCGGGGTTAAAAAT-GGAATTTTGG-AAAGT
* *
7328347 TCGGGGTTAAAAATAGAATTTTGAAAAGT
1 TCGGGGTTAAAAATGGAATTTTGGAAAGT
*
7328376 TCGGGGGT-AAAATGG-----T---AAGT
1 TCGGGGTTAAAAATGGAATTTTGGAAAGT
* ** *
7328396 TCGGGGGTAAAATGGTAATTTTGGGGAAA--
1 TCGGGGTTAAAAATGGAATTTT--GGAAAGT
*
7328425 TCGGGGTTAAAAATGGAATTTGGGGAAA-T
1 TCGGGGTTAAAAATGGAATTT-TGGAAAGT
*
7328454 TCAGGGG-T-AAAATGGTATTTT-GAGAAGT
1 TC-GGGGTTAAAAATGGAATTTTGGA-AAGT
7328482 TCGAGGG-T-AAAATGGTAATTTTGATGAAA--
1 TCG-GGGTTAAAAATGG-AATTTTG--GAAAGT
* *
7328511 TCGAGGTTAAAAATGAAATTTTGGAAAGT
1 TCGGGGTTAAAAATGGAATTTTGGAAAGT
7328540 TCGGGG
1 TCGGGG
7328546 ACCCATAAGC
Statistics
Matches: 217, Mismatches: 33, Indels: 74
0.67 0.10 0.23
Matches are distributed among these distances:
20 12 0.06
21 4 0.02
23 1 0.00
26 3 0.01
27 9 0.04
28 52 0.24
29 90 0.41
30 31 0.14
31 13 0.06
32 2 0.01
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.30
Consensus pattern (29 bp):
TCGGGGTTAAAAATGGAATTTTGGAAAGT
Found at i:7328368 original size:58 final size:59
Alignment explanation
Indices: 7328204--7328393 Score: 256
Period size: 59 Copynumber: 3.2 Consensus size: 59
7328194 GGAAAATTTA
** * * * *
7328204 GGGTAAAATGGTAATTTTTAATGAAATCGGGGTTAAAAATAGGATTTTAGAAAGTTCGA
1 GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGG
* * *
7328263 GGGTAAAACGGTAATTTTTGGTAAAATCGGGATTAAAAATGGAATTTTGGAAAGTTCGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGG
* * * *
7328322 GGGTAAAATAGTAA-TTTTGGTTAACTCGGGGTTAAAAATAGAATTTTGAAAAGTTCGG
1 GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGG
7328380 GGGTAAAATGGTAA
1 GGGTAAAATGGTAA
7328394 GTTCGGGGGT
Statistics
Matches: 114, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
58 52 0.46
59 62 0.54
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.31
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGGTAAAATCGGGGTTAAAAATAGAATTTTGGAAAGTTCGG
Found at i:7328421 original size:20 final size:20
Alignment explanation
Indices: 7328372--7328413 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7328362 GAATTTTGAA
7328372 AAGTTCGGGGGTAAAATGGT
1 AAGTTCGGGGGTAAAATGGT
7328392 AAGTTCGGGGGTAAAATGGT
1 AAGTTCGGGGGTAAAATGGT
7328412 AA
1 AA
7328414 TTTTGGGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.38, T:0.24
Consensus pattern (20 bp):
AAGTTCGGGGGTAAAATGGT
Found at i:7328430 original size:28 final size:28
Alignment explanation
Indices: 7328399--7328522 Score: 112
Period size: 28 Copynumber: 4.3 Consensus size: 28
7328389 GGTAAGTTCG
7328399 GGGGTAAAATGGTAATTTTGGGGAAATC
1 GGGGTAAAATGGTAATTTTGGGGAAATC
7328427 GGGGTTAAAAATGG-AA-TTTGGGGAAATTC
1 GGGG-T-AAAATGGTAATTTTGGGGAAA-TC
* *
7328456 AGGGGTAAAATGGT-ATTTT-GAGAAGTTC
1 -GGGGTAAAATGGTAATTTTGGGGAA-ATC
**
7328484 GAGGGTAAAATGGTAATTTTGATGAAATC
1 G-GGGTAAAATGGTAATTTTGGGGAAATC
*
7328513 GAGGTTAAAA
1 G-GGGTAAAA
7328523 ATGAAATTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
27 1 0.01
28 40 0.50
29 25 0.31
30 14 0.17
ACGTcount: A:0.35, C:0.03, G:0.32, T:0.29
Consensus pattern (28 bp):
GGGGTAAAATGGTAATTTTGGGGAAATC
Found at i:7328444 original size:78 final size:80
Alignment explanation
Indices: 7328314--7328545 Score: 272
Period size: 78 Copynumber: 2.9 Consensus size: 80
7328304 GAATTTTGGA
* * * * *
7328314 AAGTTCGGGGGTAAAATAGTAATTTTGGTTAACTCGGGGTTAAAAATAGAATTTTGAAAAGTTCG
1 AAGTTCGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCG
7328379 GGGGTAAAATGG-T-
66 GGGGTAAAATGGTTG
* *
7328392 AAGTTCGGGGGTAAAATGGTAATTTTGGGGAAATCGGGGTTAAAAATGGAATTTGGGGAAA-TTC
1 AAGTTCGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTT-TGGAAAGTTC
*
7328456 AGGGGTAAAATGGTATTTTGAG
65 GGGGGTAAAATGG----TT--G
* * * *
7328478 AAGTTCGAGGGTAAAATGGTAATTTTGATGAAATCGAGGTTAAAAATGAAATTTTGGAAAGTTCG
1 AAGTTCGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCG
7328543 GGG
66 GGG
7328546 ACCCATAAGC
Statistics
Matches: 129, Mismatches: 15, Indels: 12
0.83 0.10 0.08
Matches are distributed among these distances:
78 64 0.50
79 4 0.03
83 1 0.01
85 5 0.04
86 55 0.43
ACGTcount: A:0.34, C:0.04, G:0.31, T:0.30
Consensus pattern (80 bp):
AAGTTCGGGGGTAAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCG
GGGGTAAAATGGTTG
Found at i:7330505 original size:17 final size:17
Alignment explanation
Indices: 7330485--7330560 Score: 73
Period size: 17 Copynumber: 4.5 Consensus size: 17
7330475 AATTTAATTT
7330485 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* * **
7330502 TAAATTCAAATTTTATG
1 TAAATTTAAATTTAAAA
* *
7330519 CAAATTTAAATTCAAAA
1 TAAATTTAAATTTAAAA
*
7330536 TAAATCT-AATTTAAAA
1 TAAATTTAAATTTAAAA
7330552 CTAAATTTA
1 -TAAATTTA
7330561 TGTCTTATTT
Statistics
Matches: 43, Mismatches: 14, Indels: 3
0.72 0.23 0.05
Matches are distributed among these distances:
16 8 0.19
17 35 0.81
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:7330558 original size:34 final size:35
Alignment explanation
Indices: 7330485--7330560 Score: 93
Period size: 34 Copynumber: 2.2 Consensus size: 35
7330475 AATTTAATTT
* * **
7330485 TAAATTTAAATTTAAAATAAATTCAAATTTTATGC
1 TAAATTTAAATTCAAAATAAATTCAAATTTAAAAC
*
7330520 -AAATTTAAATTCAAAATAAA-TCTAATTTAAAAC
1 TAAATTTAAATTCAAAATAAATTCAAATTTAAAAC
7330553 TAAATTTA
1 TAAATTTA
7330561 TGTCTTATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
33 9 0.26
34 26 0.74
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (35 bp):
TAAATTTAAATTCAAAATAAATTCAAATTTAAAAC
Found at i:7333576 original size:19 final size:19
Alignment explanation
Indices: 7333552--7333597 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7333542 TCTGTTAGGT
*
7333552 AGTTAGTATTTGTTAAAAC
1 AGTTAGTATTAGTTAAAAC
*
7333571 AGTTAGTATTAGTTAAGAC
1 AGTTAGTATTAGTTAAAAC
7333590 AGTTAGTA
1 AGTTAGTA
7333598 AGTTTTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (19 bp):
AGTTAGTATTAGTTAAAAC
Found at i:7339127 original size:19 final size:19
Alignment explanation
Indices: 7339103--7339148 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7339093 TACAAAAACT
*
7339103 TACTAACTGTCTTAACTAA
1 TACTAACTGTCTTAACAAA
*
7339122 TACTAACTGTTTTAACAAA
1 TACTAACTGTCTTAACAAA
7339141 TACTAACT
1 TACTAACT
7339149 ACCTAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (19 bp):
TACTAACTGTCTTAACAAA
Found at i:7342397 original size:21 final size:21
Alignment explanation
Indices: 7342339--7342408 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
7342329 TAAATTTAGT
* *
7342339 TTTAAATTAGATTTATTTTGAA
1 TTTAAATT-TATTTAATTTGAA
***
7342361 TTTAAATTTGCATAATTTGAA
1 TTTAAATTTATTTAATTTGAA
* *
7342382 TTTAATTTTATTTAATTTAAA
1 TTTAAATTTATTTAATTTGAA
7342403 TTTAAA
1 TTTAAA
7342409 ATTAAATTAA
Statistics
Matches: 37, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
21 29 0.78
22 8 0.22
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (21 bp):
TTTAAATTTATTTAATTTGAA
Found at i:7342398 original size:15 final size:16
Alignment explanation
Indices: 7342329--7342406 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 16
7342319 AAATAAGACA
* *
7342329 TAAATTTAGTTTTAAAT
1 TAAATTTA-TTTGAATT
*
7342346 TAGATTTATTTTGAATT
1 TAAATTTA-TTTGAATT
7342363 TAAATTTGCATAATTTGAATT
1 TAAA-TT---T-ATTTGAATT
*
7342384 TAATTTTATTT-AATT
1 TAAATTTATTTGAATT
7342399 TAAATTTA
1 TAAATTTA
7342407 AAATTAAATT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
15 11 0.22
16 4 0.08
17 17 0.35
18 2 0.04
20 2 0.04
21 12 0.24
22 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.06, T:0.55
Consensus pattern (16 bp):
TAAATTTATTTGAATT
Found at i:7344370 original size:29 final size:29
Alignment explanation
Indices: 7344338--7344652 Score: 124
Period size: 29 Copynumber: 11.2 Consensus size: 29
7344328 AAAAGTTCAT
*
7344338 TTTTAACCTCG-ATTTCATCAAAATTACCA
1 TTTTAACCCCGAATTTC-TCAAAATTACCA
*
7344367 TTTT-ACCCTCGAACTTCTCAAAA-TACCA
1 TTTTAACCC-CGAATTTCTCAAAATTACCA
* *
7344395 TTTT-ACCCCTGAATTTCCCCAAATT-CCA
1 TTTTAACCCC-GAATTTCTCAAAATTACCA
* *
7344423 TTTTTAACCCC-AATTTCACCAAATTACCA
1 -TTTTAACCCCGAATTTCTCAAAATTACCA
*
7344452 TTTTACCCCCGAA-----C----TTACCA
1 TTTTAACCCCGAATTTCTCAAAATTACCA
* *
7344472 TTTTACCCCCGAACTTT-TCAAAATT-CTA
1 TTTTAACCCCGAA-TTTCTCAAAATTACCA
* * *
7344500 TTTTTAACCCCG-AGTTCACCAAAATTACTA
1 -TTTTAACCCCGAATTTC-TCAAAATTACCA
*
7344530 TTTTACCCCCGAACTTTC-CAAAATT-CCA
1 TTTTAACCCCGAA-TTTCTCAAAATTACCA
* * *
7344558 TTTTTAATCCCGATTTTAC-CAAAAATTACCG
1 -TTTTAACCCCGAATTT-CTC-AAAATTACCA
**
7344589 TTTT-ACCCTCGAACTTAAT-AAAA-T-CCTA
1 TTTTAACCC-CGAA-TTTCTCAAAATTACC-A
*
7344617 TTTTTAACCCCG-ATTTCACTAAAAATTACCA
1 -TTTTAACCCCGAATTT--CTCAAAATTACCA
7344648 TTTTA
1 TTTTA
7344653 CCCTAAATTT
Statistics
Matches: 223, Mismatches: 25, Indels: 75
0.69 0.08 0.23
Matches are distributed among these distances:
20 19 0.09
24 1 0.00
25 1 0.00
27 7 0.03
28 61 0.27
29 84 0.38
30 39 0.17
31 9 0.04
32 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.04, T:0.36
Consensus pattern (29 bp):
TTTTAACCCCGAATTTCTCAAAATTACCA
Found at i:7344411 original size:58 final size:58
Alignment explanation
Indices: 7344335--7344656 Score: 241
Period size: 58 Copynumber: 5.7 Consensus size: 58
7344325 TCCAAAAGTT
* *
7344335 CATTTTTAACCTCGATTTCATCAAAATTACCATTTTACCCTCGAACTTCTCAAAATAC
1 CATTTTTAACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACTTCTCAAAATAC
* * * *
7344393 CA-TTTT-ACCCCTGAATTTC-CCCAAATT-CCATTTTTAACCC-C-AATTTCACCAAATTAC
1 CATTTTTAACCCC-G-ATTTCACCAAAATTACCA-TTTT-ACCCTCGAACTTC-TCAAAATAC
* * * *
7344450 CA-TTTTACCCCCGA----A-C----TTACCATTTTACCCCCGAACTTTTCAAAATTC
1 CATTTTTAACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACTTCTCAAAATAC
* * * * *
7344498 TATTTTTAACCCCGAGTTCACCAAAATTACTATTTTACCCCCGAACTT-TCCAAAATTC
1 CATTTTTAACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACTTCT-CAAAATAC
* * * *
7344556 CATTTTTAATCCCGATTTTACCAAAAATTACCGTTTTACCCTCGAACTTAAT-AAAAT-C
1 CATTTTTAACCCCGATTTCACC-AAAATTACCATTTTACCCTCGAACTT-CTCAAAATAC
*
7344614 CTATTTTTAACCCCGATTTCACTAAAAATTACCATTTTACCCT
1 C-ATTTTTAACCCCGATTTCAC-CAAAATTACCATTTTACCCT
7344657 AAATTTTCCC
Statistics
Matches: 212, Mismatches: 26, Indels: 51
0.73 0.09 0.18
Matches are distributed among these distances:
47 4 0.02
48 14 0.07
49 18 0.08
52 1 0.00
53 1 0.00
54 1 0.00
56 13 0.06
57 31 0.15
58 64 0.30
59 64 0.30
61 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.04, T:0.36
Consensus pattern (58 bp):
CATTTTTAACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACTTCTCAAAATAC
Found at i:7344461 original size:28 final size:28
Alignment explanation
Indices: 7344349--7344461 Score: 104
Period size: 28 Copynumber: 4.0 Consensus size: 28
7344339 TTTAACCTCG
* *
7344349 ATTTCATCAAAATTACCATTTTACCCTCGA
1 ATTTCA-CCAAATTACCATTTTACCC-CCA
* * * *
7344379 ACTTC-TCAAAATACCATTTTACCCCTGA
1 ATTTCACCAAATTACCATTTTACCCC-CA
* *
7344407 ATTTCCCCAAATT-CCATTTTTAACCCCA
1 ATTTCACCAAATTACCA-TTTTACCCCCA
7344435 ATTTCACCAAATTACCATTTTACCCCC
1 ATTTCACCAAATTACCATTTTACCCCC
7344462 GAACTTACCA
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
27 1 0.01
28 47 0.69
29 16 0.24
30 4 0.06
ACGTcount: A:0.31, C:0.33, G:0.02, T:0.35
Consensus pattern (28 bp):
ATTTCACCAAATTACCATTTTACCCCCA
Found at i:7344471 original size:20 final size:20
Alignment explanation
Indices: 7344446--7344487 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7344436 TTTCACCAAA
7344446 TTACCATTTTACCCCCGAAC
1 TTACCATTTTACCCCCGAAC
7344466 TTACCATTTTACCCCCGAAC
1 TTACCATTTTACCCCCGAAC
7344486 TT
1 TT
7344488 TTCAAAATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.38, G:0.05, T:0.33
Consensus pattern (20 bp):
TTACCATTTTACCCCCGAAC
Found at i:7344503 original size:77 final size:78
Alignment explanation
Indices: 7344390--7344545 Score: 226
Period size: 77 Copynumber: 2.0 Consensus size: 78
7344380 CTTCTCAAAA
* * *
7344390 TACCATTTTACCCCTGAATTTCCCCAAATTCCATTTTTAACCCCAATTTCACC-AAATTACCATT
1 TACCATTTTACCCCCGAATTTCCCAAAATTCCATTTTTAACCCCAAGTTCACCAAAATTACCATT
7344454 TTACCCCCGAACT
66 TTACCCCCGAACT
* * * *
7344467 TACCATTTTACCCCCGAACTTT-TCAAAATTCTATTTTTAACCCCGAGTTCACCAAAATTACTAT
1 TACCATTTTACCCCCGAA-TTTCCCAAAATTCCATTTTTAACCCCAAGTTCACCAAAATTACCAT
7344531 TTTACCCCCGAACT
65 TTTACCCCCGAACT
7344545 T
1 T
7344546 TCCAAAATTC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
77 43 0.61
78 27 0.39
ACGTcount: A:0.29, C:0.33, G:0.04, T:0.35
Consensus pattern (78 bp):
TACCATTTTACCCCCGAATTTCCCAAAATTCCATTTTTAACCCCAAGTTCACCAAAATTACCATT
TTACCCCCGAACT
Found at i:7344612 original size:59 final size:58
Alignment explanation
Indices: 7344466--7344655 Score: 233
Period size: 59 Copynumber: 3.2 Consensus size: 58
7344456 ACCCCCGAAC
* * *
7344466 TTACCATTTTACCCCCGAACTTTTCAAAATTCTATTTTTAACCCCGAGTTCACC-AAAA
1 TTACCATTTTACCCCCGAACTTAT-AAAATTCCATTTTTAACCCCGATTTCACCAAAAA
* * *
7344524 TTACTATTTTACCCCCGAACTT-TCCAAAATTCCATTTTTAATCCCGATTTTACCAAAAA
1 TTACCATTTTACCCCCGAACTTAT--AAAATTCCATTTTTAACCCCGATTTCACCAAAAA
* * *
7344583 TTACCGTTTTACCCTCGAACTTAATAAAA-TCCTATTTTTAACCCCGATTTCACTAAAAA
1 TTACCATTTTACCCCCGAACTT-ATAAAATTCC-ATTTTTAACCCCGATTTCACCAAAAA
7344642 TTACCATTTTACCC
1 TTACCATTTTACCC
7344656 TAAATTTTCC
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
57 1 0.01
58 50 0.43
59 63 0.55
61 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.04, T:0.36
Consensus pattern (58 bp):
TTACCATTTTACCCCCGAACTTATAAAATTCCATTTTTAACCCCGATTTCACCAAAAA
Found at i:7344671 original size:59 final size:56
Alignment explanation
Indices: 7344466--7344683 Score: 181
Period size: 59 Copynumber: 3.8 Consensus size: 56
7344456 ACCCCCGAAC
* * * * *
7344466 TTACCATTTTACCCCCGAACTTTTCAAAATTCTATTTTTAACCCCGAGTTCACCAAAA
1 TTACCATTTTA-CCCTGAA-TTTCCAAAATCCTATTTTTAACCCCGATTTCACAAAAA
* * * *
7344524 TTACTATTTTACCCCCGAACTTTCCAAAATTCC-ATTTTTAATCCCGATTTTACCAAAAA
1 TTACCATTTTA-CCCTGAA-TTTCCAAAA-TCCTATTTTTAACCCCGATTTCA-CAAAAA
* ***
7344583 TTACCGTTTTACCCTCGAACTTAATAAAATCCTATTTTTAACCCCGATTTCACTAAAAA
1 TTACCATTTTACCCT-GAA-TTTCCAAAATCCTATTTTTAACCCCGATTTCAC-AAAAA
* *
7344642 TTACCATTTTACCCTAAATTTTCCCAAAAT--TATTTTTTACCC
1 TTACCATTTTACCCTGAA-TTT-CCAAAATCCTATTTTTAACCC
7344684 TCGAGAGTCA
Statistics
Matches: 132, Mismatches: 22, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
57 11 0.08
58 54 0.41
59 67 0.51
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.38
Consensus pattern (56 bp):
TTACCATTTTACCCTGAATTTCCAAAATCCTATTTTTAACCCCGATTTCACAAAAA
Found at i:7349338 original size:96 final size:96
Alignment explanation
Indices: 7349200--7349396 Score: 351
Period size: 96 Copynumber: 2.1 Consensus size: 96
7349190 ATAAATTTTT
*
7349200 CTAATCACTTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAAAT-AAATG
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTT-AAAAAATCAAATG
7349264 TATTTTTAAATTTAAATTATTATTTAATTACA
65 TATTTTTAAATTTAAATTATTATTTAATTACA
*
7349296 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATTT
1 CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATGT
*
7349361 ATTTTTAAATTTGAATTATTATTTAATTACA
66 ATTTTTAAATTTAAATTATTATTTAATTACA
7349392 CTAAT
1 CTAAT
7349397 TTATCATGAT
Statistics
Matches: 97, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 7 0.07
96 90 0.93
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (96 bp):
CTAATCAATTTCAATAAAAACTAAAATTAGTATATTATTATTCATAAAGTTAAAAAATCAAATGT
ATTTTTAAATTTAAATTATTATTTAATTACA
Found at i:7356765 original size:72 final size:72
Alignment explanation
Indices: 7356665--7356822 Score: 280
Period size: 72 Copynumber: 2.2 Consensus size: 72
7356655 GGAAGTAGGG
* * * *
7356665 ATTGGACCAGAGATTGAGTTAGTAGCCAAACTCAATAAGTTGAGAGATTTAAGCATTCCTATCTC
1 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
7356730 TCGAGGT
66 TCGAGGT
7356737 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
1 ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
7356802 TCGAGGT
66 TCGAGGT
7356809 ATTGAACCAGAAAT
1 ATTGAACCAGAAAT
7356823 GGCATTTCTG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 82 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (72 bp):
ATTGAACCAGAAATTGAGTTAGCAGCCAAACTCAATAAGTGGAGAGATTTAAGCATTCCTATCTC
TCGAGGT
Found at i:7359087 original size:19 final size:19
Alignment explanation
Indices: 7359063--7359108 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
7359053 TACAAAAACT
*
7359063 TACTAATTGTCTTAACTA-A
1 TACTAACTGTCTTAAC-AGA
*
7359082 TACTAACTGTTTTAACAGA
1 TACTAACTGTCTTAACAGA
7359101 TACTAACT
1 TACTAACT
7359109 ACCTAACAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (19 bp):
TACTAACTGTCTTAACAGA
Found at i:7362410 original size:21 final size:21
Alignment explanation
Indices: 7362371--7362410 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7362361 CTCTTGAAGC
*
7362371 ACCTCTTGCTCCCCTAAAATA
1 ACCTCTTGCTCCCCGAAAATA
* *
7362392 ACCTCTTGTTCCTCGAAAA
1 ACCTCTTGCTCCCCGAAAA
7362411 CCACCTCTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.35, G:0.07, T:0.30
Consensus pattern (21 bp):
ACCTCTTGCTCCCCGAAAATA
Found at i:7363398 original size:19 final size:19
Alignment explanation
Indices: 7363374--7363419 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
7363364 TACAAAAACT
*
7363374 TACTAACTGTCTTAACTAA
1 TACTAACTGTCTTAACAAA
*
7363393 TACTAACTGTTTTAACAAA
1 TACTAACTGTCTTAACAAA
7363412 TACTAACT
1 TACTAACT
7363420 ACCTAACAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (19 bp):
TACTAACTGTCTTAACAAA
Found at i:7366663 original size:17 final size:17
Alignment explanation
Indices: 7366623--7366698 Score: 73
Period size: 17 Copynumber: 4.5 Consensus size: 17
7366613 AAATAAGACA
7366623 TAAATTTAGTTTTAAA-T
1 TAAATTTA-TTTTAAATT
* *
7366640 TAGATTTATTTTGAATT
1 TAAATTTATTTTAAATT
*** *
7366657 TAAATTTGCATAAAATT
1 TAAATTTATTTTAAATT
*
7366674 TGAATTTATTTTAAATT
1 TAAATTTATTTTAAATT
7366691 TAAATTTA
1 TAAATTTA
7366699 AAATTAAATT
Statistics
Matches: 44, Mismatches: 14, Indels: 2
0.73 0.23 0.03
Matches are distributed among these distances:
16 6 0.14
17 38 0.86
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (17 bp):
TAAATTTATTTTAAATT
Found at i:7373062 original size:49 final size:49
Alignment explanation
Indices: 7373012--7373267 Score: 171
Period size: 49 Copynumber: 5.2 Consensus size: 49
7373002 TCAAGCGGCA
* *
7373012 ACGGCGAATCCAATACCACGAAGATATGAAGAGAAAGATTTAAGCCGCA
1 ACGGCGAATCCAATACCACGAAGACATGAAGAGAAAGATTTAAGCCGCG
* * * * * ** * * *
7373061 ACAGCGAATTCAGTATCATGAAGACACAAAGGGAAAGATATAAGCTGCG
1 ACGGCGAATCCAATACCACGAAGACATGAAGAGAAAGATTTAAGCCGCG
* * * *
7373110 ATGAC-AGATCCAGTACCACGAAGACATGAA-AGGAAAGATCTGAA-CCGCG
1 ACGGCGA-ATCCAATACCACGAAGACATGAAGA-GAAAGAT-TTAAGCCGCG
* * * * * * *
7373159 ACAG-TAGATCCAATACTC-TGAAGACATGAAGGGAAAGATCTAAACCACG
1 ACGGCGA-ATCCAATAC-CACGAAGACATGAAGAGAAAGATTTAAGCCGCG
* * * *
7373208 ACGGTGGATCCAATACCACGAAGATATGAAGAGAAAGATCTAAGCCGCG
1 ACGGCGAATCCAATACCACGAAGACATGAAGAGAAAGATTTAAGCCGCG
* *
7373257 ATGGCGGATCC
1 ACGGCGAATCC
7373268 TGTACCGCGA
Statistics
Matches: 155, Mismatches: 43, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
48 4 0.03
49 148 0.95
50 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (49 bp):
ACGGCGAATCCAATACCACGAAGACATGAAGAGAAAGATTTAAGCCGCG
Found at i:7373267 original size:98 final size:98
Alignment explanation
Indices: 7373019--7373267 Score: 261
Period size: 98 Copynumber: 2.5 Consensus size: 98
7373009 GCAACGGCGA
* * * * *
7373019 ATCCAATACCACGAAGATATGAAGAGAAAGATTTAAGCCGCAACAGCGAATTCAGTATCATGAAG
1 ATCCAATACCACGAAGATATGAAGAGAAAGATCTAAGCCGCGACAGCGGATCCAATATCATGAAG
* ** *
7373084 ACACAAAGGGAAAGATATAAGCTGCGATGACAG
66 ACACAAAGGGAAAGATATAAACCACGACGACAG
* * **
7373117 ATCCAGTACCACGAAGACATGAA-AGGAAAGATCTGAA-CCGCGACAGTAGATCCAATACTC-TG
1 ATCCAATACCACGAAGATATGAAGA-GAAAGATCT-AAGCCGCGACAGCGGATCCAATA-TCATG
** * ***
7373179 AAGACATGAAGGGAAAGATCTAAACCACGACGGTGG
63 AAGACACAAAGGGAAAGATATAAACCACGACGACAG
**
7373215 ATCCAATACCACGAAGATATGAAGAGAAAGATCTAAGCCGCGATGGCGGATCC
1 ATCCAATACCACGAAGATATGAAGAGAAAGATCTAAGCCGCGACAGCGGATCC
7373268 TGTACCGCGA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
97 3 0.02
98 113 0.93
99 5 0.04
ACGTcount: A:0.41, C:0.20, G:0.24, T:0.15
Consensus pattern (98 bp):
ATCCAATACCACGAAGATATGAAGAGAAAGATCTAAGCCGCGACAGCGGATCCAATATCATGAAG
ACACAAAGGGAAAGATATAAACCACGACGACAG
Found at i:7374162 original size:200 final size:200
Alignment explanation
Indices: 7373715--7374445 Score: 1182
Period size: 200 Copynumber: 3.6 Consensus size: 200
7373705 TCAACAAAAC
* *
7373715 AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCTAGAGAAGTGGACTAAATTCGTCTTCCTT-AG
1 AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTT-CTTGAG
* * *
7373779 GAGATCTAGAGAAGCGAATTAAAACAAGCAAGATGGTCATCTTCCTGATGAGATACAGAGAAAAA
65 GAGATCCAGAGAAGCGAATTAAAACAAGCAAGACGGTCATCTTCCTGATGAGATACAGAGAAGAA
* *
7373844 TGCCAACTCAAAGCTCAAATGTGAGCAAATCTTCAAACCCAGCTTCCTGATGAGACACTGAAAAG
130 TGCCAACTCAAAGCTC-AATGTGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAG
7373909 CAGGTCG
194 CAGGTCG
7373916 AAGCAATGAAAA-GGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAG
1 AAGCAAT-AAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAG
*
7373980 GAGATCCAGAGAAGCGAATTAAAACAAGCAAGATGGTCATCTTCCTGATGAGATACAGAGAAGAA
65 GAGATCCAGAGAAGCGAATTAAAACAAGCAAGACGGTCATCTTCCTGATGAGATACAGAGAAGAA
*
7374045 TGCCAACTCAACGCTCAATGTGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGC
130 TGCCAACTCAAAGCTCAATGTGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGC
7374110 AGGTCG
195 AGGTCG
7374116 AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAGG
1 AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAGG
* * * * *
7374181 AGATCTAGAGAAGCGAATTGAAACAAGCGAGGCGGTCATCTTCCTGATGAGATACAGAGAAGAAC
66 AGATCCAGAGAAGCGAATTAAAACAAGCAAGACGGTCATCTTCCTGATGAGATACAGAGAAGAAT
* * *
7374246 ACCAACTCAAAGCTCAATGCGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGTA
131 GCCAACTCAAAGCTCAATGTGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCA
7374311 GGTCG
196 GGTCG
* * * *
7374316 AAGTAATAAAAAGGTTAGCTTTCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCCTGAGG
1 AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAGG
*
7374381 AGATCCAGAGAAGCGAATTAAAAC-AGACAATTG-CGGTCATCTTCCTGATGAGACACAGAGAAG
66 AGATCCAGAGAAGCGAATTAAAACAAG-CAA--GACGGTCATCTTCCTGATGAGATACAGAGAAG
7374444 AA
128 AA
7374446 GACCAGGTCA
Statistics
Matches: 499, Mismatches: 25, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
199 6 0.01
200 326 0.65
201 162 0.32
202 5 0.01
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (200 bp):
AAGCAATAAAATGGTTAGCTTCCTGAGGAGATCCAGAGAAGTGGACCAAATTCGTCTTCTTGAGG
AGATCCAGAGAAGCGAATTAAAACAAGCAAGACGGTCATCTTCCTGATGAGATACAGAGAAGAAT
GCCAACTCAAAGCTCAATGTGAGCAAATCTTCGAACCCAGCTTCCTGATGAGACACTGAGAAGCA
GGTCG
Found at i:7374835 original size:17 final size:17
Alignment explanation
Indices: 7374785--7374860 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 17
7374775 AAATAAGACA
*
7374785 TAAATTTAGTTTTAAA-T
1 TAAATTTA-TTATAAATT
* * *
7374802 TAGATTTATTTTGAATT
1 TAAATTTATTATAAATT
7374819 TAAATTTGCA-TA-AAATT
1 TAAATTT--ATTATAAATT
*
7374836 TGAATTTATTATAAATT
1 TAAATTTATTATAAATT
7374853 TAAATTTA
1 TAAATTTA
7374861 AAATTAAATT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
15 1 0.02
16 8 0.17
17 36 0.77
18 1 0.02
19 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.07, T:0.51
Consensus pattern (17 bp):
TAAATTTATTATAAATT
Found at i:7376826 original size:29 final size:29
Alignment explanation
Indices: 7376782--7377063 Score: 207
Period size: 29 Copynumber: 9.8 Consensus size: 29
7376772 CCCGAACTTT
7376782 CCAAAATT-CCATTTTTAACCCTGATTTCA
1 CCAAAATTACCA-TTTTAACCCTGATTTCA
* *
7376811 CCAAAATTACTATTTT-ACCCTCGAACTTC-
1 CCAAAATTACCATTTTAACCCT-G-ATTTCA
* *
7376840 TCAAAATT-CCATTTTTAACCTTGATTTCA
1 CCAAAATTACCA-TTTTAACCCTGATTTCA
* *
7376869 CCAAAATTACCATTTTACCCCTAAATTTC-
1 CCAAAATTACCATTTTAACCCT-GATTTCA
* * *
7376898 CCCAAATT-CCATTTTTAACCCCGATTTTA
1 CCAAAATTACCA-TTTTAACCCTGATTTCA
*
7376927 CCAAAATTACCATTTT-ACCCTCGAACTTC-
1 CCAAAATTACCATTTTAACCCT-G-ATTTCA
*
7376956 CCAAAATT-CCATTTTTAACCCCGATTTCA
1 CCAAAATTACCA-TTTTAACCCTGATTTCA
* *
7376985 CCAAAATTACCA-TTTCACCCACGAACTTT--
1 CCAAAATTACCATTTTAACCC-TG-A-TTTCA
7377014 CCAAAATT-CCATTTTTAACCTCT-ATTTCA
1 CCAAAATTACCA-TTTTAACC-CTGATTTCA
*
7377043 CCAAAATTACTATTTT-ACCCT
1 CCAAAATTACCATTTTAACCCT
7377064 TAAACTTTCT
Statistics
Matches: 202, Mismatches: 25, Indels: 54
0.72 0.09 0.19
Matches are distributed among these distances:
27 5 0.02
28 43 0.21
29 110 0.54
30 40 0.20
31 4 0.02
ACGTcount: A:0.32, C:0.30, G:0.02, T:0.36
Consensus pattern (29 bp):
CCAAAATTACCATTTTAACCCTGATTTCA
Found at i:7376838 original size:58 final size:58
Alignment explanation
Indices: 7376774--7377181 Score: 484
Period size: 58 Copynumber: 7.0 Consensus size: 58
7376764 TATGGGTCCC
*
7376774 CGAACTTTCCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACTATTTTACCCT
1 CGAACTTTCCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACCATTTTACCCT
*
7376832 CGAAC-TTCTCAAAATTCCATTTTTAACCTTGATTTCACCAAAATTACCATTTTACCC-
1 CGAACTTTC-CAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACCATTTTACCCT
* * * * *
7376889 CTAAATTTCCCCAAATTCCATTTTTAACCCCGATTTTACCAAAATTACCATTTTACCCT
1 CGAACTTT-CCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACCATTTTACCCT
* * * *
7376948 CGAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAAAATTACCATTTCACCCA
1 CGAACTTTCCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACCATTTTACCCT
*
7377006 CGAACTTTCCAAAATTCCATTTTTAACCTCT-ATTTCACCAAAATTACTATTTTACCCT
1 CGAACTTTCCAAAATTCCATTTTTAACC-CTGATTTCACCAAAATTACCATTTTACCCT
** * * * ***
7377064 TAAACTTTCTAAATTTCCATTTTTAA-CCTCGAGTTCACCAAAAATTAATGTTTTACCCT
1 CGAACTTTCCAAAATTCCATTTTTAACCCT-GATTTCACC-AAAATTACCATTTTACCCT
* * ** * *
7377123 CAAACTTTCTAAAA-TCTCATTTTTAACCCCAATTTCACCAAAAATTATCGTTTTACCCT
1 CGAACTTTCCAAAATTC-CATTTTTAACCCTGATTTCACC-AAAATTACCATTTTACCCT
7377182 AAATTTTCTA
Statistics
Matches: 306, Mismatches: 34, Indels: 19
0.85 0.09 0.05
Matches are distributed among these distances:
56 2 0.01
57 7 0.02
58 225 0.74
59 70 0.23
60 2 0.01
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.37
Consensus pattern (58 bp):
CGAACTTTCCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACCATTTTACCCT
Found at i:7377084 original size:174 final size:174
Alignment explanation
Indices: 7376774--7377165 Score: 542
Period size: 174 Copynumber: 2.2 Consensus size: 174
7376764 TATGGGTCCC
* * * *
7376774 CGAACTTTCCAAAATTCCATTTTTAACCCTGATTTCACCAAAATTACTATTTTACCCTCGAACTT
1 CGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAATTACCATTTCACCCACGAACTT
7376839 CTCAAAATTCCATTTTTAACCTTGATTTCACCAAAATTACCATTTTACCCCTAAATTTCCCCAAA
66 CTCAAAATTCCATTTTTAACCTTGATTTCACCAAAATTACCATTTTACCCCTAAATTT-CCCAAA
* * *
7376904 TTCCATTTTTAACCCCGATTTTACC-AAAATTACCATTTTACCCT
130 TTCCATTTTTAACCCCGAGTTCACCAAAAATTAACATTTTACCCT
*
7376948 CGAACTTCCCAAAATTCCATTTTTAACCCCGATTTCACCAAAATTACCATTTCACCCACGAACTT
1 CGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAATTACCATTTCACCCACGAACTT
* * *
7377013 -TCCAAAATTCCATTTTTAACCTCT-ATTTCACCAAAATTACTATTTTACCCTTAAACTTT-CTA
66 CT-CAAAATTCCATTTTTAACCT-TGATTTCACCAAAATTACCATTTTACCCCTAAA-TTTCCCA
* **
7377075 AATTTCCATTTTTAACCTCGAGTTCACCAAAAATTAATGTTTTACCCT
128 AA-TTCCATTTTTAACCCCGAGTTCACCAAAAATTAACATTTTACCCT
* * *
7377123 CAAACTTTCTAAAA-TCTCATTTTTAACCCCAATTTCACCAAAA
1 CGAACTTTCCAAAATTC-CATTTTTAACCCCGATTTCACCAAAA
7377166 ATTATCGTTT
Statistics
Matches: 194, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
173 5 0.03
174 133 0.69
175 56 0.29
ACGTcount: A:0.32, C:0.28, G:0.03, T:0.36
Consensus pattern (174 bp):
CGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAATTACCATTTCACCCACGAACTT
CTCAAAATTCCATTTTTAACCTTGATTTCACCAAAATTACCATTTTACCCCTAAATTTCCCAAAT
TCCATTTTTAACCCCGAGTTCACCAAAAATTAACATTTTACCCT
Found at i:7380237 original size:29 final size:29
Alignment explanation
Indices: 7380199--7380274 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
7380189 GCCCAAGGGT
*
7380199 AAAATGGTAATTTTTGGAAATTTTGAGGTC
1 AAAAT-GTAATTTCTGGAAATTTTGAGGTC
* * *
7380229 AGAATGTAATTTCCT-AAAATTTTGTGGTC
1 AAAATGTAATTT-CTGGAAATTTTGAGGTC
7380258 AAAATGTAATTTCTGGA
1 AAAATGTAATTTCTGGA
7380275 CTGTTTGGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 2 0.05
29 31 0.82
30 5 0.13
ACGTcount: A:0.34, C:0.07, G:0.20, T:0.39
Consensus pattern (29 bp):
AAAATGTAATTTCTGGAAATTTTGAGGTC
Found at i:7380712 original size:20 final size:20
Alignment explanation
Indices: 7380663--7380724 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
7380653 ATTCCTTTCC
7380663 TTAAAAAGAACATCATCATTA
1 TTAAAAA-AACATCATCATTA
*
7380684 TT-TAAAAACATCATCATTA
1 TTAAAAAAACATCATCATTA
7380703 TTAAAAAAACATCATCATTA
1 TTAAAAAAACATCATCATTA
7380723 TT
1 TT
7380725 CATTTATTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 15 0.39
20 21 0.55
21 2 0.05
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.34
Consensus pattern (20 bp):
TTAAAAAAACATCATCATTA
Found at i:7382899 original size:68 final size:68
Alignment explanation
Indices: 7382687--7384263 Score: 2566
Period size: 68 Copynumber: 22.9 Consensus size: 68
7382677 CTTCATCTAA
* *
7382687 CTCTTACTTCAATTTCAGAGA-GACAAAGGCTTGTTATCCAGCTCTACTTCAATTTCAAGAGGAT
1 CTCTTACTTCAATTTCAGAGATG---AAGACGTGTTATCCA-CTCTACTTCAATTTCAAGAGGAT
7382751 GACGTTG
62 GACGTTG
* *
7382758 CTGTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
7382823 GTTG
65 GTTG
7382827 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7382892 TTG
66 TTG
*
7382895 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7382960 TTG
66 TTG
* *
7382963 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTAACCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
7383028 GTTG
65 GTTG
*
7383032 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
7383097 GTTG
65 GTTG
* *
7383101 CTCTTACTTCAATTTCAGAGATGAAAACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGATG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383166 TTG
66 TTG
* *
7383169 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTTAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383234 TTG
66 TTG
*
7383237 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
*
7383302 GTTA
65 GTTG
7383306 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383371 TTG
66 TTG
*
7383374 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383439 TTG
66 TTG
*
7383442 CTCTTACTTCAATTTCAGATATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGTA-GATGA
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAG-AGGATGA
7383506 CGTTG
64 CGTTG
*
7383511 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
7383576 GTTG
65 GTTG
7383580 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383645 TTG
66 TTG
*
7383648 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383713 TTG
66 TTG
* * * * *
7383716 CTCTTACTTTAATTTCAGATATGAAGACATGTTATCCATTCTACTTCAATTTCAAGTGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383781 TTG
66 TTG
* *
7383784 CTCTTACTTCAATTTCAGAGATGAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATGGCG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383849 TTG
66 TTG
7383852 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383917 TTG
66 TTG
7383920 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAA-ACGGATGA
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA-GGATGA
7383984 CGTTG
64 CGTTG
* *
7383989 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACA
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7384054 TTG
66 TTG
** *
7384057 CTCTTACTTCAATTTCAGAGACAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGACAGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGA-TGAC
7384122 GTTG
65 GTTG
* * *
7384126 CTCTTACTTCAATTTCAAAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAAG
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT--G
* *
7384191 AAATGATCTTA
63 --ACG---TTG
* * * * *
7384202 CTCTTACTTCAATTTCAGAGATAAAGACTTGATATCTAACTTTACTTCAATTTCAAGAGGAT
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATC-CACTCTACTTCAATTTCAAGAGGAT
7384264 AAACATTTGA
Statistics
Matches: 1425, Mismatches: 61, Indels: 35
0.94 0.04 0.02
Matches are distributed among these distances:
68 803 0.56
69 514 0.36
70 25 0.02
71 21 0.01
72 1 0.00
73 2 0.00
76 59 0.04
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (68 bp):
CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
TTG
Found at i:7383042 original size:205 final size:204
Alignment explanation
Indices: 7382687--7384263 Score: 2548
Period size: 205 Copynumber: 7.6 Consensus size: 204
7382677 CTTCATCTAA
* * *
7382687 CTCTTACTTCAATTTCAGAGAGACAAAGGCTTGTTATCCAGCTCTACTTCAATTTCAAGAGGATG
1 CTCTTACTTCAATTTC--AGAGATAAAGACGTGTTATCCA-CTCTACTTCAATTTCAAGAGGATG
* * *
7382752 ACGTTGCTGTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
63 ACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAG
7382817 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
127 GATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAA
7382882 GAGGATGACGTTG
192 GAGGATGACGTTG
7382895 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
* * *
7382960 TTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTAACCAACTCTACTTCAATTTCAAGCGGAT
66 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT
*
7383025 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGC
130 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA
7383090 GGATGACGTTG
194 GGATGACGTTG
*
7383101 CTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGAT
1 CTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGAC
*
7383165 GTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTTAATTTCAAGAGGAT
65 GTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
*
7383230 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGC
130 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA
*
7383295 GGATGACGTTA
194 GGATGACGTTG
*
7383306 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
7383371 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
66 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
*
7383436 ACGTTGCTCTTACTTCAATTTCAGATATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGTA
131 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAG-A
7383501 -GATGACGTTG
194 GGATGACGTTG
* *
7383511 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGAC
*
7383576 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
65 GTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
*
7383641 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
130 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
7383706 GATGACGTTG
195 GATGACGTTG
* * * * * *
7383716 CTCTTACTTTAATTTCAGATATGAAGACATGTTATCCATTCTACTTCAATTTCAAGTGGATGACG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
* *
7383781 TTGCTCTTACTTCAATTTCAGAGATGAAGATGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
66 TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
*
7383846 GCGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGG
131 ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGG
7383911 ATGACGTTG
196 ATGACGTTG
*
7383920 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAA-ACGGATGA
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA-GGATGA
7383984 CGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGA
64 CGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGA
* **
7384049 TGACATTGCTCTTACTTCAATTTCAGAGACAAAGACGTGTTATCCACTCTACTTCAATTTCAAGA
129 TGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGA
*
7384114 GGACAGACGTTG
194 GGA-TGACGTTG
* *
7384126 CTCTTACTTCAATTTCAAAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAAG
1 CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGAT--G
* * * * * *
7384191 AAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCTAACTTTACTTCAATTTC
63 --ACG---TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATC-CACTCTACTTCAATTTC
7384256 AAGAGGAT
122 AAGAGGAT
7384264 AAACATTTGA
Statistics
Matches: 1300, Mismatches: 51, Indels: 30
0.94 0.04 0.02
Matches are distributed among these distances:
204 199 0.15
205 676 0.52
206 343 0.26
207 4 0.00
208 17 0.01
210 2 0.00
213 36 0.03
214 23 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (204 bp):
CTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATGACG
TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGATG
ACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGG
ATGACGTTG
Found at i:7383222 original size:274 final size:273
Alignment explanation
Indices: 7382687--7384263 Score: 2590
Period size: 274 Copynumber: 5.7 Consensus size: 273
7382677 CTTCATCTAA
* * *
7382687 CTCTTACTTCAATTTCAGAGA-GACAAAGGCTTGTTATCCAGCTCTACTTCAATTTCAAGAGGAT
1 CTCTTACTTCAATTTCAGAGATG---AAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
* *
7382751 GACGTTGCTGTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGC
63 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA
*
7382816 GGATGACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCA
127 GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCA
7382881 AGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATT
192 AGAGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATT
7382946 TCAAGAGGATGACGTTG
257 TCAAGAGGATGACGTTG
* *
7382963 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTAACCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATGAC
*
7383028 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGA
66 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGA
7383093 TGACGTTGCTCTTACTTCAATTTCAGAGATGAAA-ACGTGTTATCCACTCTACTTCAATTTCAAG
130 TGACGTTGCTCTTACTTCAATTTCAGAGAT-AAAGACGTGTTATCCACTCTACTTCAATTTCAAG
* *
7383157 AGGATGATGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTTAATTTC
194 AGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTC
7383222 AAGAGGATGACGTTG
259 AAGAGGATGACGTTG
*
7383237 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATGAC
*
7383302 GTTACTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
66 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
7383367 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
131 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
* *
7383432 GATGACGTTGCTCTTACTTCAATTTCAGATATGAAGACGTGTTATCCAACTCTACTTCAATTTCA
196 GATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCA
7383497 AGTA-GATGACGTTG
260 AG-AGGATGACGTTG
*
7383511 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGATGAC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATGAC
7383576 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
66 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
7383641 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
131 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
* * * * *
7383706 GATGACGTTGCTCTTACTTTAATTTCAGATATGAAGACATGTTATCCATTCTACTTCAATTTCAA
196 GATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAA
*
7383771 GTGGATGACGTTG
261 GAGGATGACGTTG
* *
7383784 CTCTTACTTCAATTTCAGAGATGAAGATGTGTTATCC-ACTCTACTTCAATTTCAAGAGGATGGC
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATGAC
7383848 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
66 GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
*
7383913 GACGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAA-A
131 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGA
7383977 CGGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTC
195 -GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTC
*
7384042 AAGAGGATGACATTG
259 AAGAGGATGACGTTG
** *
7384057 CTCTTACTTCAATTTCAGAGACAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGGACAGA
1 CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGA-TGA
* * *
7384121 CGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
65 CGTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAGG
* * * * * *
7384186 ATAAGAAATGATCTTACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCTAACTTTACTTCA
129 AT--G--ACG---TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATC-CACTCTACTTCA
7384251 ATTTCAAGAGGAT
186 ATTTCAAGAGGAT
7384264 AAACATTTGA
Statistics
Matches: 1235, Mismatches: 47, Indels: 32
0.94 0.04 0.02
Matches are distributed among these distances:
272 137 0.11
273 339 0.27
274 650 0.53
275 27 0.02
276 21 0.02
277 2 0.00
279 2 0.00
282 56 0.05
283 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (273 bp):
CTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATGAC
GTTGCTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCCACTCTACTTCAATTTCAAGAGGAT
GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAAGAG
GATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTACTTCAATTTCAA
GAGGATGACGTTG
Found at i:7384172 original size:38 final size:36
Alignment explanation
Indices: 7382686--7384266 Score: 377
Period size: 31 Copynumber: 45.7 Consensus size: 36
7382676 GCTTCATCTA
* *
7382686 ACTCTTACTTCAATTTCAGAGAGACAAAGGCTTGTTATCC
1 ACTC-TACTTCAATTTCA-A-AGATAAAGACTTG-TATCC
** * *
7382726 AGCTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 A-CTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
** * * *
7382759 TGT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*** * *
7382795 AACTCTACTTCAATTTC-AAGCGGATGAC--GT-TGC
1 -ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7382828 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7382864 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7382896 TCT-TACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7382932 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * * *
7382964 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTAACC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*** * *
7383000 AACTCTACTTCAATTTC-AAGCGGATGAC--GT-TGC
1 -ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7383033 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*** * *
7383069 AACTCTACTTCAATTTC-AAGCGGATGAC--GT-TGC
1 -ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7383102 TCT-TACTTCAATTTCAGAGATGAAA-ACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGAT-AAAGACTTG-TATCC
** * *
7383138 ACTCTACTTCAATTTC-AAGAGGATGA--TGT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7383170 TCT-TACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
* ** * *
7383206 ACTCTACTTTAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7383238 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*** *
7383274 AACTCTACTTCAATTTC-AAGCGGATGAC--GT-T--
1 -ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7383305 ACTCTTACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTC-TACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7383343 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7383375 TCT-TACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7383411 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * * *
7383443 TCT-TACTTCAATTTCAGATATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
* *
7383479 AACTCTACTTCAATTTC-AAG-TAGATGAC--GT-TGC
1 -ACTCTACTTCAATTTCAAAGATA-AAGACTTGTATCC
* * * *
7383512 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*** * *
7383548 AACTCTACTTCAATTTC-AAGCGGATGAC--GT-TGC
1 -ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7383581 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7383617 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * *
7383649 TCT-TACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7383685 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * * * *
7383717 TCT-TACTTTAATTTCAGATATGAAGACATGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
* * * *
7383753 ATTCTACTTCAATTTC-AAG-TGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGAT-AAAGACTTGTATCC
* * *
7383785 TCT-TACTTCAATTTCAGAGATGAAGA-TGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACT-TG-TATCC
** * * *
7383821 ACTCTACTTCAATTTC-AAGAGGATGGC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7383853 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** * *
7383889 ACTCTACTTCAATTTC-AAGAGGATGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
* * * *
7383921 TCT-TACTTCAATTTCAGAGATGAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
*
7383957 AACTCTACTTCAATTTCAAACGGAT---GAC--GT-TGC
1 -ACTCTACTTCAATTTCAAA--GATAAAGACTTGTATCC
* * *
7383990 TCT-TACTTCAATTTCAGAGATAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** *
7384026 ACTCTACTTCAATTTC-AAGAGGATGACATTG----C
1 ACTCTACTTCAATTTCAAAGATAAAGAC-TTGTATCC
* * * *
7384058 TCT-TACTTCAATTTCAGAGACAAAGACGTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
* * *
7384094 ACTCTACTTCAATTTC-AAGAGGACAGAC--GT-TGC
1 ACTCTACTTCAATTTCAAAGA-TAAAGACTTGTATCC
*
7384127 TCT-TACTTCAATTTCAAAGATAAAGACTTGTTATCC
1 ACTCTACTTCAATTTCAAAGATAAAGACTTG-TATCC
** *
7384163 AACTCTACTTCAATTTCAAGAGGAT-AAGAAATG-ATCTT
1 -ACTCTACTTCAATTTCAA-A-GATAAAGACTTGTATC-C
* *
7384201 ACTCTTACTTCAATTTCAGAGATAAAGACTTGATATCTA
1 ACTC-TACTTCAATTTCAAAGATAAAGACTTG-TATC-C
*
7384240 ACTTTACTTCAATTTCAAGAGGATAAA
1 ACTCTACTTCAATTTCAA-A-GATAAA
7384267 CATTTGACAT
Statistics
Matches: 1133, Mismatches: 247, Indels: 322
0.67 0.15 0.19
Matches are distributed among these distances:
29 3 0.00
30 4 0.00
31 242 0.21
32 210 0.19
33 36 0.03
34 42 0.04
35 31 0.03
36 152 0.13
37 239 0.21
38 131 0.12
39 15 0.01
40 25 0.02
41 3 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (36 bp):
ACTCTACTTCAATTTCAAAGATAAAGACTTGTATCC
Found at i:7384654 original size:51 final size:51
Alignment explanation
Indices: 7384501--7384655 Score: 161
Period size: 51 Copynumber: 3.1 Consensus size: 51
7384491 TGCGAGCTTC
* * * * *
7384501 GATCTTTCCCGTC-GTGTCTTCGTGGTACTAGATCTGCCATTGC-GATCTTA
1 GATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCATTGCAG-TCTTA
* * * *
7384551 GATCTTTCCCTTCTGAATCTTTGTGGTACTGGATCCACCATTGCGGTATTA
1 GATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCATTGCAGTCTTA
* * ** *
7384602 GATATTTCCCTTCTGTATCTTTGTGGCACTGGATCTGTCGTTGCAGTCTTA
1 GATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCATTGCAGTCTTA
7384653 GAT
1 GAT
7384656 TTTTTCGGTC
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
50 12 0.14
51 73 0.85
52 1 0.01
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.40
Consensus pattern (51 bp):
GATCTTTCCCTTCTGTATCTTTGTGGTACTGGATCTACCATTGCAGTCTTA
Found at i:7384755 original size:100 final size:99
Alignment explanation
Indices: 7384606--7384821 Score: 265
Period size: 100 Copynumber: 2.2 Consensus size: 99
7384596 GTATTAGATA
* * * * * * * *
7384606 TTTCCCTTCTGTATCTTTGTGGCACTGGATCTGTCGTTGCAGTCTTAGATTTTTTCGGTCCATGC
1 TTTCCCTTTTGT-T-TTTATGGTACTGGATCTGCCATTGCAGTCTTAGATCTTTCCCGTCCATGC
*
7384671 TTTTGAGGTACACGGTCC-G-CAGTTACGACTTAGACC
64 TTTTGAGATACACGG-CCTGTC-GTTACGACTTAGACC
* * *
7384707 TTTCCTTTTCTGTTTTTATGGTACTGGATCTGCCATTGCGGTCTTAGATCTTTCCCTTCCATGCT
1 TTTCCCTTT-TGTTTTTATGGTACTGGATCTGCCATTGCAGTCTTAGATCTTTCCCGTCCATGCT
7384772 TTTGAGATACACGGCCTGTCGTTACGACTTAGACC
65 TTTGAGATACACGGCCTGTCGTTACGACTTAGACC
7384807 TTTCCCTTTTGTTTT
1 TTTCCCTTTTGTTTT
7384822 GTGGTGCTGA
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
99 8 0.08
100 79 0.80
101 9 0.09
102 3 0.03
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (99 bp):
TTTCCCTTTTGTTTTTATGGTACTGGATCTGCCATTGCAGTCTTAGATCTTTCCCGTCCATGCTT
TTGAGATACACGGCCTGTCGTTACGACTTAGACC
Found at i:7386940 original size:7 final size:7
Alignment explanation
Indices: 7386930--7387025 Score: 79
Period size: 7 Copynumber: 12.7 Consensus size: 7
7386920 TGACTTTTTC
7386930 TTTTTGT
1 TTTTTGT
*
7386937 TTTTTCT
1 TTTTTGT
*
7386944 TTGTCT-T
1 TT-TTTGT
7386951 TTTTTGT
1 TTTTTGT
7386958 TTGTTTGTT
1 TT-TTTG-T
7386967 TGTTGTTGT
1 T-TT-TTGT
7386976 TTTTTGCTT
1 TTTTTG--T
7386985 TTTTTGT
1 TTTTTGT
7386992 TTTTT-T
1 TTTTTGT
7386998 TTGCTTTGT
1 TT--TTTGT
7387007 TTTTTGT
1 TTTTTGT
7387014 TTTTTGT
1 TTTTTGT
7387021 TTTTT
1 TTTTT
7387026 TTATGATAGC
Statistics
Matches: 75, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
6 5 0.07
7 40 0.53
8 11 0.15
9 15 0.20
10 4 0.05
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.81
Consensus pattern (7 bp):
TTTTTGT
Found at i:7386945 original size:19 final size:18
Alignment explanation
Indices: 7386923--7387027 Score: 79
Period size: 19 Copynumber: 5.5 Consensus size: 18
7386913 TTCATCTTGA
7386923 CTTTTTCTTTTTGTTTTTT
1 CTTTTT-TTTTTGTTTTTT
7386942 CTTTGTCTTTTTTTGTTTGTTT
1 C-TT-T-TTTTTTTGTTT-TTT
* * *
7386964 -GTTTGTTGTTGTTTTTT
1 CTTTTTTTTTTGTTTTTT
7386981 GCTTTTTTTGTTT-TTTTTT
1 -CTTTTTTT-TTTGTTTTTT
*
7387000 GCTTTGTTTTTTGTTTTTT
1 -CTTTTTTTTTTGTTTTTT
*
7387019 GTTTTTTTT
1 CTTTTTTTT
7387028 ATGATAGCAC
Statistics
Matches: 69, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
17 3 0.04
18 19 0.28
19 27 0.39
20 5 0.07
21 10 0.14
22 5 0.07
ACGTcount: A:0.00, C:0.06, G:0.13, T:0.81
Consensus pattern (18 bp):
CTTTTTTTTTTGTTTTTT
Found at i:7386968 original size:22 final size:20
Alignment explanation
Indices: 7386930--7387018 Score: 83
Period size: 22 Copynumber: 4.2 Consensus size: 20
7386920 TGACTTTTTC
7386930 TTTTTGTTT-TTTCTTTGTCTT
1 TTTTTGTTTGTTT-TTTGT-TT
7386951 TTTTTGTTTGTTTGTTTGTTGT
1 TTTTTGTTTGTTT-TTTGTT-T
*
7386973 TGTTT-TTTGCTTTTTTTGTTTT
1 TTTTTGTTTG--TTTTTTG-TTT
7386995 TTTTTGCTTTGTTTTTTGTTT
1 TTTTTG-TTTGTTTTTTGTTT
7387016 TTT
1 TTT
7387019 GTTTTTTTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
21 20 0.34
22 29 0.50
23 5 0.09
24 4 0.07
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.81
Consensus pattern (20 bp):
TTTTTGTTTGTTTTTTGTTT
Found at i:7386998 original size:44 final size:46
Alignment explanation
Indices: 7386938--7387025 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 46
7386928 TCTTTTTGTT
7386938 TTTTCTTTGTCTTTTTTTG-TTTGTTTGTTTG-TTGTTGTTTTTTGC
1 TTTTCTTTGTCTTTTTTTGCTTTGTTT-TTTGTTTGTTGTTTTTTGC
* *
7386983 TTTT-TTTGTTTTTTTTTGCTTTGTTTTTTGTTTTTTGTTTTTT
1 TTTTCTTTGTCTTTTTTTGCTTTGTTTTTTGTTTGTTGTTTTTT
7387026 TTATGATAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
44 17 0.44
45 22 0.56
ACGTcount: A:0.00, C:0.05, G:0.15, T:0.81
Consensus pattern (46 bp):
TTTTCTTTGTCTTTTTTTGCTTTGTTTTTTGTTTGTTGTTTTTTGC
Found at i:7391205 original size:30 final size:31
Alignment explanation
Indices: 7391169--7391270 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 31
7391159 ACCTGGGGGC
7391169 AAAATGGTAATTTTGGTGA-AGTCGGGGTTA
1 AAAATGGTAATTTTGGTGACAGTCGGGGTTA
* * *
7391199 AAAATGG-AATTTT--TAAGAGTTCGGGGGT-
1 AAAATGGTAATTTTGGTGACAG-TCGGGGTTA
* **
7391227 AAAACGGTAATTTTTGGTGACA-TTAGGGTTA
1 AAAATGGTAA-TTTTGGTGACAGTCGGGGTTA
7391258 AAAATGGT-ATTTT
1 AAAATGGTAATTTT
7391271 AGAAAGCCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
27 2 0.04
28 8 0.14
29 19 0.34
30 17 0.30
31 7 0.12
32 3 0.05
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.35
Consensus pattern (31 bp):
AAAATGGTAATTTTGGTGACAGTCGGGGTTA
Found at i:7391261 original size:59 final size:59
Alignment explanation
Indices: 7391163--7391302 Score: 160
Period size: 59 Copynumber: 2.4 Consensus size: 59
7391153 TTGAATACCT
* * * **
7391163 GGGGGCAAAATGGTAA-TTTTGGTGAAGTCGGGGTTAAAAATGGAATTTTTA-AGAGTTC
1 GGGGGTAAAATGGTAATTTTTGGTGAAGTCAGGGTTAAAAATGGAA-TTTTAGAAAGCCC
* * *
7391221 GGGGGTAAAACGGTAATTTTTGGTGACA-TTAGGGTTAAAAATGGTATTTTAGAAAGCCC
1 GGGGGTAAAATGGTAATTTTTGGTGA-AGTCAGGGTTAAAAATGGAATTTTAGAAAGCCC
*
7391280 AGGGGTAAAATGGTAATTTTTGG
1 GGGGGTAAAATGGTAATTTTTGG
7391303 AAATTTTGGG
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
58 19 0.28
59 49 0.71
60 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.31, T:0.31
Consensus pattern (59 bp):
GGGGGTAAAATGGTAATTTTTGGTGAAGTCAGGGTTAAAAATGGAATTTTAGAAAGCCC
Found at i:7397835 original size:31 final size:27
Alignment explanation
Indices: 7397763--7397821 Score: 109
Period size: 27 Copynumber: 2.2 Consensus size: 27
7397753 CGAACGTGGA
*
7397763 TTGACGTTGACTAACAATGATCGAATG
1 TTGACGTTGACTAACAATGATCGAAAG
7397790 TTGACGTTGACTAACAATGATCGAAAG
1 TTGACGTTGACTAACAATGATCGAAAG
7397817 TTGAC
1 TTGAC
7397822 CGATGTTGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (27 bp):
TTGACGTTGACTAACAATGATCGAAAG
Found at i:7404929 original size:14 final size:16
Alignment explanation
Indices: 7404900--7404932 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
7404890 ATATTTATAC
7404900 CAATCGAACTAAAATT
1 CAATCGAACTAAAATT
7404916 CAATC-AAC-AAAATT
1 CAATCGAACTAAAATT
7404930 CAA
1 CAA
7404933 ACAAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 3 0.18
16 5 0.29
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (16 bp):
CAATCGAACTAAAATT
Found at i:7405785 original size:24 final size:24
Alignment explanation
Indices: 7405733--7405787 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
7405723 TTGTGTCTTG
*
7405733 TATTCTTTTTCCAGTTAAATTTTAC
1 TATT-TTTTTCCAGTTAAATTTGAC
*
7405758 TATTTTTTT-CAGTTAAATTCTGAT
1 TATTTTTTTCCAGTTAAATT-TGAC
7405782 TATTTT
1 TATTTT
7405788 AGGAAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 10 0.37
24 13 0.48
25 4 0.15
ACGTcount: A:0.24, C:0.11, G:0.05, T:0.60
Consensus pattern (24 bp):
TATTTTTTTCCAGTTAAATTTGAC
Found at i:7405787 original size:23 final size:23
Alignment explanation
Indices: 7405738--7405787 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
7405728 TCTTGTATTC
*
7405738 TTTTTCCAGTTAAATTTTACTAT
1 TTTTTCCAGTTAAATTTGACTAT
* *
7405761 TTTTTTCAGTTAAATTCTGATTAT
1 TTTTTCCAGTTAAATT-TGACTAT
7405785 TTT
1 TTT
7405788 AGGAAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.24, C:0.10, G:0.06, T:0.60
Consensus pattern (23 bp):
TTTTTCCAGTTAAATTTGACTAT
Found at i:7407310 original size:18 final size:17
Alignment explanation
Indices: 7407291--7407335 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
7407281 TAAACTTATA
*
7407291 AAAATTATAAAAATATT
1 AAAATTATAAAAACATT
*
7407308 AAAATTGATATAAACATTT
1 AAAATT-ATAAAAACA-TT
7407327 AAAATTATA
1 AAAATTATA
7407336 TTAAAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.25
18 10 0.42
19 8 0.33
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
AAAATTATAAAAACATT
Found at i:7409121 original size:10 final size:9
Alignment explanation
Indices: 7409060--7409133 Score: 64
Period size: 9 Copynumber: 8.2 Consensus size: 9
7409050 TATCGAGAAA
7409060 TTTTATAAT
1 TTTTATAAT
*
7409069 TTATTAGAAAT
1 TT-TTA-TAAT
*
7409080 TTTAATAAT
1 TTTTATAAT
*
7409089 TTGT-T-AT
1 TTTTATAAT
7409096 TTTTATAAT
1 TTTTATAAT
*
7409105 ATTTATAAGT
1 TTTTATAA-T
7409115 TTTTATAAT
1 TTTTATAAT
7409124 TTTTA-AAT
1 TTTTATAAT
7409132 TT
1 TT
7409134 GTGTCAGTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
7 5 0.10
8 7 0.13
9 22 0.42
10 13 0.25
11 5 0.10
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:7409470 original size:12 final size:12
Alignment explanation
Indices: 7409453--7409486 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7409443 TTATTGAAAA
7409453 AATAAAAATAAT
1 AATAAAAATAAT
*
7409465 AATAAAGATAAT
1 AATAAAAATAAT
*
7409477 AATAATAATA
1 AATAAAAATA
7409487 CTCTCACCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (12 bp):
AATAAAAATAAT
Found at i:7410216 original size:187 final size:189
Alignment explanation
Indices: 7409836--7410219 Score: 569
Period size: 187 Copynumber: 2.0 Consensus size: 189
7409826 ATAAAGAATC
* ***
7409836 ATGTGCCGGCTATAGTGTTCTACAACTTGTCTATTAAAATGGCATTGAATCTTTGTACATTCATC
1 ATGTGCCGGCTATAGTGTTCTACAACTTGTCTATAAAAATGGCATTGAATCTTCAAACATTCATC
* *
7409901 CTATTCCTACCCATAAGATATTCTATATTTACATAGCCCAGTGAGTGGGAAAAAGAAAAACAAGA
66 CTA---CT---CATAAGATATTCTATATTTACATAGCCCAGTGAGCGAGAAAAAGAAAAACAAGA
*
7409966 GAGGGGTGATGGGGTTTGGTGGTATGTTTAAGGAGCTTGCTGTGTTTGCACTTATGGTAACACTT
125 GAGGGGTGATGGGGTTTAGTGGTATGTTTAAGGAGCTTGCTGTGTTTGCACTTATGGTAACACTT
*
7410031 ATGTGCCGGCTATAGTGTTCTACAACTTGTCTATAAAAATGGCGTTGAATCTTCAAACATTCATC
1 ATGTGCCGGCTATAGTGTTCTACAACTTGTCTATAAAAATGGCATTGAATCTTCAAACATTCATC
*
7410096 CTA-T-A-AA-ATATTCTATATTTACATAGCCCAGTGAGCGAGAAAAGAGAAAAAACGAGAGAGG
66 CTACTCATAAGATATTCTATATTTACATAGCCCAGTGAGCGAGAAAA-AG-AAAAACAAGAGAGG
* *
7410157 GGTGTTGGGGTTTAGTGGTATGTTTAAGGAGCTTGCTGTGTTTGCAGTTATGGTAACACTT
129 GGTGATGGGGTTTAGTGGTATGTTTAAGGAGCTTGCTGTGTTTGCACTTATGGTAACACTT
7410218 AT
1 AT
7410220 AGCAACTTCA
Statistics
Matches: 176, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
185 34 0.19
186 4 0.02
187 74 0.42
191 1 0.01
195 63 0.36
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (189 bp):
ATGTGCCGGCTATAGTGTTCTACAACTTGTCTATAAAAATGGCATTGAATCTTCAAACATTCATC
CTACTCATAAGATATTCTATATTTACATAGCCCAGTGAGCGAGAAAAAGAAAAACAAGAGAGGGG
TGATGGGGTTTAGTGGTATGTTTAAGGAGCTTGCTGTGTTTGCACTTATGGTAACACTT
Found at i:7412298 original size:22 final size:22
Alignment explanation
Indices: 7412242--7412302 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
7412232 GAAGCGAGAT
7412242 AATAATATGCAAA-AATG--TAA
1 AATAA-ATGCAAATAATGATTAA
7412262 AATACAAGTGC--ATAATGATTAA
1 AATA-AA-TGCAAATAATGATTAA
7412284 AATAAATGCAAATAATGAT
1 AATAAATGCAAATAATGAT
7412303 GAGGAGGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
19 1 0.03
20 12 0.35
21 6 0.18
22 15 0.44
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26
Consensus pattern (22 bp):
AATAAATGCAAATAATGATTAA
Found at i:7412526 original size:59 final size:59
Alignment explanation
Indices: 7412412--7412816 Score: 564
Period size: 59 Copynumber: 6.9 Consensus size: 59
7412402 AGAAAATTTA
* * * *
7412412 AGGTTAAAAATGGGATCTTAGAAAGATTT-GGGAGTAAAATGGTAATTTTTTGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAG-TTTAGGG-GTAAAATGGTAATTTTTGGTGAAATCG
* * *
7412472 AGGTTAAAGATGGAATTTTGGAAAGTTTAGGGGTAAAACGGTATTTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * ** *
7412531 GGGTTAAAAATGGAATTTTGGGAAGTTCGGGGGTAAAATGGTAATTTTCGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * **
7412590 GGGTTAAAAATGGAATTTTGAAAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
* *
7412649 AGGTCAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGATGAAATC-
1 AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
7412707 AGGGTCAAAAATGGAATTTTGGAAAGTTCAGGGGTAAAACGGTAATTTTTGGTGAAATCG
1 A-GGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
*
7412767 AGGTT-AAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
1 AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGG
7412817 AAGTTTTGGG
Statistics
Matches: 311, Mismatches: 31, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
58 43 0.14
59 243 0.78
60 25 0.08
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (59 bp):
AGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:7412539 original size:30 final size:29
Alignment explanation
Indices: 7412446--7412784 Score: 145
Period size: 29 Copynumber: 11.5 Consensus size: 29
7412436 GATTTGGGAG
* *
7412446 TAAAATGGTAATTTTTTGTGAAATCGAGGT
1 TAAAATGGT-ATTTTTGGTGAAATCGGGGT
* *
7412476 TAAAGATGG-AATTTT-G-GAAAGTTTAGGGG-
1 TAAA-ATGGTATTTTTGGTGAAA---TCGGGGT
*
7412505 TAAAACGGTATTTTTTGGTGAAATCGGGGT
1 TAAAATGGTA-TTTTTGGTGAAATCGGGGT
* * *
7412535 TAAAAATGG-AATTTTGG-GAAGTTCGGGGG
1 T-AAAATGGTATTTTTGGTGAA-ATCGGGGT
*
7412564 TAAAATGGTAATTTTCGGTGAAATCGGGGT
1 TAAAATGGT-ATTTTTGGTGAAATCGGGGT
* * *
7412594 TAAAAATGG-AATTTT-G-AAAAGTTCGGGGG
1 T-AAAATGGTATTTTTGGTGAAA--TCGGGGT
*
7412623 TAAAATGGTAATTTTTGGTGAAATCGAGGT
1 TAAAATGGT-ATTTTTGGTGAAATCGGGGT
* * *
7412653 CAAAAATGG-AATTTT-G-GAAAGTTTAGGGG-
1 -TAAAATGGTATTTTTGGTGAAA---TCGGGGT
* *
7412682 TAAAATGGTAATTTTTGATGAAATCAGGGT
1 TAAAATGGT-ATTTTTGGTGAAATCGGGGT
* *
7412712 CAAAAATGG-AATTTT-G-GAAAGTTCAGGGG-
1 -TAAAATGGTATTTTTGGTGAAA--TC-GGGGT
* *
7412741 TAAAACGGTAATTTTTGGTGAAATCGAGGT
1 TAAAATGGT-ATTTTTGGTGAAATCGGGGT
*
7412771 TAAAATGGAATTTT
1 TAAAATGGTATTTT
7412785 GGAAAGTTTG
Statistics
Matches: 229, Mismatches: 41, Indels: 79
0.66 0.12 0.23
Matches are distributed among these distances:
27 15 0.07
28 36 0.16
29 63 0.28
30 63 0.28
31 37 0.16
32 15 0.07
ACGTcount: A:0.34, C:0.04, G:0.29, T:0.33
Consensus pattern (29 bp):
TAAAATGGTATTTTTGGTGAAATCGGGGT
Found at i:7412843 original size:29 final size:29
Alignment explanation
Indices: 7412772--7412875 Score: 140
Period size: 29 Copynumber: 3.6 Consensus size: 29
7412762 AATCGAGGTT
* *
7412772 AAAATGGAA-TTTTGGAAAGTTTGGGGGT-
1 AAAATGTAATTTTTGG-AAGTTTTGGGGTC
7412800 AAAATGGTAATTTTTGGAAGTTTTGGGGTC
1 AAAAT-GTAATTTTTGGAAGTTTTGGGGTC
* *
7412830 AAAATGTAATTTTTTGAAGTTTTAGGGTC
1 AAAATGTAATTTTTGGAAGTTTTGGGGTC
7412859 AAAATGTAATTTTTGGA
1 AAAATGTAATTTTTGGA
7412876 CTGTTTAAGG
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
28 5 0.07
29 52 0.76
30 11 0.16
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (29 bp):
AAAATGTAATTTTTGGAAGTTTTGGGGTC
Found at i:7414764 original size:17 final size:17
Alignment explanation
Indices: 7414729--7414785 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
7414719 ATTTAATTTT
* *
7414729 AAATTTAAATTTTATAC
1 AAATTTAAATTTAAAAC
7414746 AAATTTAAATTTAAAAC
1 AAATTTAAATTTAAAAC
*
7414763 AAATCT-AATTTAAAAC
1 AAATTTAAATTTAAAAC
7414779 TAAATTT
1 -AAATTT
7414786 GATTTGTTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
16 10 0.29
17 25 0.71
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATTTAAATTTAAAAC
Found at i:7419638 original size:6 final size:6
Alignment explanation
Indices: 7419628--7419694 Score: 86
Period size: 6 Copynumber: 11.7 Consensus size: 6
7419618 TTGAATTTGT
* **
7419628 TTTAAA ATTAAA -TTAAA TTTAAA TTTAAA TTT-AA TTTAAA TTTGGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7419674 TTT-AA TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTA
7419695 TTATAAATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
5 14 0.26
6 40 0.74
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:7419648 original size:17 final size:17
Alignment explanation
Indices: 7419628--7419703 Score: 100
Period size: 17 Copynumber: 4.5 Consensus size: 17
7419618 TTGAATTTGT
* *
7419628 TTTAAAATTAAATTAAA
1 TTTAAATTTAAATTTAA
7419645 TTTAAATTTAAATTTAA
1 TTTAAATTTAAATTTAA
**
7419662 TTTAAATTTGGATTTAA
1 TTTAAATTTAAATTTAA
7419679 TTTAAATTTAAATTT-A
1 TTTAAATTTAAATTTAA
7419695 TTATAAATT
1 TT-TAAATT
7419704 CAAAGTCCAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
16 3 0.06
17 49 0.94
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTAAATTTAAATTTAA
Found at i:7419655 original size:23 final size:23
Alignment explanation
Indices: 7419632--7419694 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 23
7419622 ATTTGTTTTA
7419632 AAATTAAA-TTAAATTTAAATTT
1 AAATTAAATTTAAATTTAAATTT
* **
7419654 AAATTTAATTTAAATTTGGATTT
1 AAATTAAATTTAAATTTAAATTT
*
7419677 AATTTAAATTTAAATTTA
1 AAATTAAATTTAAATTTA
7419695 TTATAAATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
22 7 0.21
23 27 0.79
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (23 bp):
AAATTAAATTTAAATTTAAATTT
Found at i:7419670 original size:11 final size:12
Alignment explanation
Indices: 7419628--7419694 Score: 86
Period size: 11 Copynumber: 5.8 Consensus size: 12
7419618 TTGAATTTGT
*
7419628 TTTAAAATTAAA
1 TTTAAATTTAAA
7419640 -TTAAATTTAAA
1 TTTAAATTTAAA
7419651 TTTAAATTT-AA
1 TTTAAATTTAAA
**
7419662 TTTAAATTTGGA
1 TTTAAATTTAAA
7419674 TTT-AATTTAAA
1 TTTAAATTTAAA
7419685 TTTAAATTTA
1 TTTAAATTTA
7419695 TTATAAATTC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
11 30 0.62
12 18 0.38
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (12 bp):
TTTAAATTTAAA
Found at i:7420793 original size:20 final size:19
Alignment explanation
Indices: 7420760--7420806 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
7420750 TTTTGAAAAT
*
7420760 AAAGAACAAAAAATGAAGGATA
1 AAAGAACAAAATA-GAA-GA-A
7420782 AAAGAACAAAATAGAAGAA
1 AAAGAACAAAATAGAAGAA
7420801 AAAGAA
1 AAAGAA
7420807 TGAGGAAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 7 0.29
20 2 0.08
21 3 0.12
22 12 0.50
ACGTcount: A:0.72, C:0.04, G:0.17, T:0.06
Consensus pattern (19 bp):
AAAGAACAAAATAGAAGAA
Found at i:7421528 original size:30 final size:30
Alignment explanation
Indices: 7421492--7421786 Score: 454
Period size: 30 Copynumber: 9.9 Consensus size: 30
7421482 AAATTGTCTA
*
7421492 AAAATTACATTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
* *
7421522 AAAATTATATTTT-AGCCCTAAAACTTTTCC
1 AAAATTACATTTTGA-CCCCAAAACTTTTCC
*
7421552 AAAATTATATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
**
7421582 AAAATTATGTTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
7421612 AAAATTACATTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
7421642 AAAATTACATTTTGA-CCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
7421671 AAAATTACATTTTTG-CCCCAAAACTTTTCC
1 AAAATTACA-TTTTGACCCCAAAACTTTTCC
** *
7421701 AAAATTATGTTTTGACCCTAAAAC-TTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
7421730 AAAATTACATTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
7421760 AAAATTACATTTTGACCCCAAAACTTT
1 AAAATTACATTTTGACCCCAAAACTTT
7421787 CCTAAATCCC
Statistics
Matches: 246, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
29 54 0.22
30 191 0.78
31 1 0.00
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:7421752 original size:19 final size:19
Alignment explanation
Indices: 7421728--7421782 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 19
7421718 CTAAAACTTT
7421728 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
7421747 CC-AAA--AC-TTTT----
1 CCAAAATTACATTTTGACC
7421758 CCAAAATTACATTTTGACC
1 CCAAAATTACATTTTGACC
7421777 CCAAAA
1 CCAAAA
7421783 CTTTCCTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 2 0.07
12 3 0.11
14 2 0.07
15 8 0.29
16 2 0.07
18 3 0.11
19 8 0.29
ACGTcount: A:0.40, C:0.27, G:0.04, T:0.29
Consensus pattern (19 bp):
CCAAAATTACATTTTGACC
Found at i:7421860 original size:58 final size:58
Alignment explanation
Indices: 7421790--7421908 Score: 186
Period size: 58 Copynumber: 2.1 Consensus size: 58
7421780 AAACTTTCCT
* *
7421790 AAATCCCATTTTAACCCTAATTTCACC-AAAATGTACCATTTTACCCTCGAATCTTTTA
1 AAATCCCATTTTAACCCCAATTTCACCAAAAAT-TACCATTTTACCCCCGAATCTTTTA
* *
7421848 AAATTCCATTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
1 AAATCCCATTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
7421906 AAA
1 AAA
7421909 AAAAATTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
58 51 0.91
59 5 0.09
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.34
Consensus pattern (58 bp):
AAATCCCATTTTAACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAATCTTTTA
Found at i:7421864 original size:29 final size:28
Alignment explanation
Indices: 7421817--7421908 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 28
7421807 TAATTTCACC
7421817 AAAATGTACCATTTTACCCTCGAATCTTTT
1 AAAAT-TACCATTTTACCC-CGAATCTTTT
* ****
7421847 AAAATT-CCATTTTAACCCCGATTTCACCA
1 AAAATTACCATTTT-ACCCCGA-ATCTTTT
7421876 AAAATTACCATTTTACCCCCGAATCTTTT
1 AAAATTACCATTTTA-CCCCGAATCTTTT
7421905 AAAA
1 AAAA
7421909 AAAAATTCCA
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
28 10 0.21
29 20 0.42
30 18 0.38
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCGAATCTTTT
Found at i:7421896 original size:30 final size:29
Alignment explanation
Indices: 7421795--7421952 Score: 92
Period size: 30 Copynumber: 5.2 Consensus size: 29
7421785 TTCCTAAATC
**
7421795 CCATTTTAACCCTAATTTCACCAAAATGTA
1 CCATTTTAACCCCGATTTCACCAAAAT-TA
**
7421825 CCATTTT-ACCCTCGAATCTT--TTAAAATT-
1 CCATTTTAACCC-CG-AT-TTCACCAAAATTA
7421853 CCATTTTAACCCCGATTTCACCAAAAATTA
1 CCATTTTAACCCCGATTTCACC-AAAATTA
* * **
7421883 CCATTTTACCCCCGAATCTTTTAAAAAAAAATT-
1 CCATTTTAACCCCG-A---TTT-CACCAAAATTA
*
7421916 CCATTTTTAACCCCGATTGCACCAAAATTA
1 CCA-TTTTAACCCCGATTTCACCAAAATTA
*
7421946 TCATTTT
1 CCATTTT
7421953 GCCCCCAGGT
Statistics
Matches: 97, Mismatches: 16, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
26 2 0.02
27 2 0.02
28 9 0.09
29 26 0.27
30 29 0.30
31 3 0.03
32 2 0.02
33 4 0.04
34 19 0.20
35 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (29 bp):
CCATTTTAACCCCGATTTCACCAAAATTA
Found at i:7424799 original size:60 final size:60
Alignment explanation
Indices: 7424706--7424822 Score: 234
Period size: 60 Copynumber: 1.9 Consensus size: 60
7424696 GACTTGTGTT
7424706 CCATCTTATTACAATTGAAGCATTTCCCTTGGAATTTGGGCTTCTTGGAAACACCTCCTC
1 CCATCTTATTACAATTGAAGCATTTCCCTTGGAATTTGGGCTTCTTGGAAACACCTCCTC
7424766 CCATCTTATTACAATTGAAGCATTTCCCTTGGAATTTGGGCTTCTTGGAAACACCTC
1 CCATCTTATTACAATTGAAGCATTTCCCTTGGAATTTGGGCTTCTTGGAAACACCTC
7424823 TTTTTGGTCC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.24, C:0.26, G:0.15, T:0.35
Consensus pattern (60 bp):
CCATCTTATTACAATTGAAGCATTTCCCTTGGAATTTGGGCTTCTTGGAAACACCTCCTC
Found at i:7425857 original size:50 final size:50
Alignment explanation
Indices: 7425778--7425877 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
7425768 AGACTAATAG
* * *
7425778 AAAACATAATAATGAACAGTGCACTAGGTAGGTTACTTTGAAAGAGAGGT
1 AAAACACAATAATGAACAATGCACCAGGTAGGTTACTTTGAAAGAGAGGT
*
7425828 AAAACACAATAATGAACAATGCACCAGGTAGGTTACTTTTAAAGAGAGGT
1 AAAACACAATAATGAACAATGCACCAGGTAGGTTACTTTGAAAGAGAGGT
7425878 GATGCACTAG
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (50 bp):
AAAACACAATAATGAACAATGCACCAGGTAGGTTACTTTGAAAGAGAGGT
Found at i:7430326 original size:20 final size:21
Alignment explanation
Indices: 7430297--7430335 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
7430287 TATTATGATT
7430297 TTTTTAAATTTTTTTTATGTA
1 TTTTTAAATTTTTTTTATGTA
7430318 TTTTT-AATTTTTTTTATG
1 TTTTTAAATTTTTTTTATG
7430336 AAACACACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTTAAATTTTTTTTATGTA
Found at i:7434842 original size:24 final size:24
Alignment explanation
Indices: 7434815--7434873 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
7434805 AATTTGACTC
*
7434815 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
7434839 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAATTG
7434863 AAACAAATAAA
1 AAACAAATAAA
7434874 TAAAATTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAATTG
Found at i:7434882 original size:24 final size:24
Alignment explanation
Indices: 7434815--7434889 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
7434805 AATTTGACTC
* * *
7434815 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAAAATTTAATTG
* *
7434839 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAAAATTTAATTG
* *
7434863 AAACAAATAAATAAAATTTAACTG
1 AAACAAATAAACAAAATTTAATTG
7434887 AAA
1 AAA
7434890 GATTATTTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.24
Consensus pattern (24 bp):
AAACAAATAAACAAAATTTAATTG
Found at i:7436881 original size:41 final size:41
Alignment explanation
Indices: 7436802--7436881 Score: 160
Period size: 41 Copynumber: 2.0 Consensus size: 41
7436792 AATAATAAAA
7436802 TAATCTAGACTAATAAGAATTTGACTCAAACAACTAAACTC
1 TAATCTAGACTAATAAGAATTTGACTCAAACAACTAAACTC
7436843 TAATCTAGACTAATAAGAATTTGACTCAAACAACTAAAC
1 TAATCTAGACTAATAAGAATTTGACTCAAACAACTAAAC
7436882 AGAGTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.47, C:0.19, G:0.07, T:0.26
Consensus pattern (41 bp):
TAATCTAGACTAATAAGAATTTGACTCAAACAACTAAACTC
Found at i:7436897 original size:24 final size:24
Alignment explanation
Indices: 7436870--7436920 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
7436860 AATTTGACTC
* *
7436870 AAACAACTAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAACTG
7436894 AAACAAATAAACAGAGTTTAACTG
1 AAACAAATAAACAGAGTTTAACTG
7436918 AAA
1 AAA
7436921 GATTATTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAACTG
Found at i:7447734 original size:21 final size:21
Alignment explanation
Indices: 7447696--7447742 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
7447686 CGTGGATCTT
7447696 TTTTTTAAAAAATATTATG-A
1 TTTTTTAAAAAATATTATGTA
* *
7447716 TTTTTTAAATAATTTTTATGTA
1 TTTTTTAAA-AAATATTATGTA
7447738 TTTTT
1 TTTTT
7447743 AATTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 8 0.35
22 6 0.26
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TTTTTTAAAAAATATTATGTA
Found at i:7449167 original size:6 final size:6
Alignment explanation
Indices: 7449118--7449174 Score: 62
Period size: 6 Copynumber: 9.5 Consensus size: 6
7449108 ATTCAATGCG
* * * *
7449118 TCTTCC TCTTCC TCTTTC TCTT-C ATCTTGC TCTTGC TCTTGC TCTAGC
1 TCTTGC TCTTGC TCTTGC TCTTGC -TCTTGC TCTTGC TCTTGC TCTTGC
7449166 TCTTGC TCT
1 TCTTGC TCT
7449175 GGGGCAGGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
5 1 0.02
6 44 0.96
7 1 0.02
ACGTcount: A:0.04, C:0.37, G:0.09, T:0.51
Consensus pattern (6 bp):
TCTTGC
Found at i:7450149 original size:16 final size:16
Alignment explanation
Indices: 7450125--7450164 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7450115 CAAAATAAAA
*
7450125 TAAAATAAATTTAATT
1 TAAAATAAATTAAATT
*
7450141 TAAATTAAATTAAATT
1 TAAAATAAATTAAATT
*
7450157 AAAAATAA
1 TAAAATAA
7450165 CAAAACTTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAATAAATTAAATT
Found at i:7450511 original size:11 final size:11
Alignment explanation
Indices: 7450495--7450522 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7450485 AAAATTACCT
7450495 TTCTTTCCTTC
1 TTCTTTCCTTC
7450506 TTCTTTCCTTC
1 TTCTTTCCTTC
7450517 TTCTTT
1 TTCTTT
7450523 TTTCTCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (11 bp):
TTCTTTCCTTC
Found at i:7453171 original size:674 final size:669
Alignment explanation
Indices: 7451957--7453281 Score: 1901
Period size: 674 Copynumber: 2.0 Consensus size: 669
7451947 GAATACTTAT
* *
7451957 AATACTTGAGAATAAGATGAATCTGTTTATGTTTTGTTACGGTAATTTACTTTGATAAAAGTTTG
1 AATACTTAAGAATAAGATGAATCTGTTTATGTTTTGTTACGGAAATTTACTTTGATAAAAGTTTG
** *
7452022 GTTAAGATAAATTGCAATGTGAATGCTTTATTTTAAGGAATCAATCACTCAATGATTTGATTACA
66 GTT---ATAAA-TG-AATGTGAATGCTTTATTACAAGGAATCAATCACTCAAGGATTTGATTACA
*
7452087 TGAATTCATTCTCACTAAAGTTTTATGAATCCATTTTGTGACAGACTTACTTATTTAATCTAAAA
126 TGAACTCATTCTCACTAAAGTTTTATGAATCCATTTTGTGACAGACTTACTTATTTAATCTAAAA
7452152 TTTTCCCTAATTTTCCTGCTTATCATATTCACTTGAAAAAAAAAAAAAAGAAGGTTAATGATTGG
191 TTTTCCCTAATTTTCCTGCTTATCATATTCACTTG----AAAAAAAAAAGAAGGTTAATGATTGG
7452217 AGATTGAAAAGAAATTTATAATCATTTGGCTTTCTATATTTTTGGTTTTAAGGCGTAGGATATTG
252 AGATTGAAAAGAAATTTATAATCATTTGGCTTTCTATATTTTTGGTTTTAAGGCGTAGGA-ATTG
* *
7452282 TTTATCTTAATTTTAGTAATGCTGGTTTTTGAATTTTTTTTTAAAAAAATTGAGAATTTATTTTG
316 TTTATCTTAATTTTAGTAATGCTGGTTTTT--ATTATTTTTTAAAAAAATTGAGAATTTATTTTA
*
7452347 AAATTATAACAGAAATATAAAATTATTTAGATTTGATTTTTGAAATATATTATTTGCTTTTTAAT
379 AAATTATAACAGAAATATAAAATTATTTAGATTTGATTTTTGAAATATATTATTCGCTTTTTAAT
* * * * *
7452412 TTTATACTTATTTTTTTTATTTCAATCTGGTACTTAAAAAATTGTTCTAATAAAAAAAACATCAC
444 TTTAGACTCAATTTTTTTATTTCAATCTAGTACTTAAAAAATTGTTCTAATAAAAAAAACACCAC
7452477 GTGACGTTTTAATCTTTTGTAAAACATATAAAAAAACATCATGTGACATTTTTCATTGACTAACA
509 GTGACG-TTT-ATCTTTTGTAAAACATATAAAAAAACATCATGTGACATTTTTCATTGACTAACA
* * *
7452542 CAACCATGAAATTTTTTTTAACGCCAGTCCAAAAATTCGACAAAAAATCATATCAGAATAATATT
572 CAACCATGAAA-TATTTTTAACGCCAGTCCAAAAATTCAACAAAAAATCATATCAAAATAATATT
7452607 TTTCATTGACGTTTTAATCTTTTTTAACACTTGC
636 TTTCATTGACGTTTTAATCTTTTTTAACACTTGC
*
7452641 AATACTTAAGAATACGATGAATCTGTTTATGTTTTGTTACGGAAATTTACTTTGATAAAAGTTTG
1 AATACTTAAGAATAAGATGAATCTGTTTATGTTTTGTTACGGAAATTTACTTTGATAAAAGTTTG
* * * * *
7452706 G-T-T-CA-G-ATGTGAATGCTTTATTGCACAAGGAATCAATCACTTAGGGATTTGGTTAGATGA
66 GTTATAAATGAATGTGAATGCTTTATT--ACAAGGAATCAATCACTCAAGGATTTGATTACATGA
7452766 ACTCATTCTCACT-AAGTTTTATGAATCCATTTTGTGACAGACTTACTTTACTTTTTGAATCTAA
129 ACTCATTCTCACTAAAGTTTTATGAATCCATTTTGTGACAGACTTAC-TTA---TTT-AATCTAA
* * *
7452830 AATTTTCCCTAATTTTTCTGCTTCTCATATTCACTTG-AAAAAAAAA-AAGTTTAATGATTGGAG
189 AATTTTCCCTAATTTTCCTGCTTATCATATTCACTTGAAAAAAAAAAGAAGGTTAATGATTGGAG
7452893 ATTGAAAAGAAATTTATAATCATTTGGCTTTCTATATTTTTGGTTTTAAGGCGTAGG-ATTGTTT
254 ATTGAAAAGAAATTTATAATCATTTGGCTTTCTATATTTTTGGTTTTAAGGCGTAGGAATTGTTT
7452957 ATCTTAATTTTAGTAATGCTGGTTTTT-TTATTTTTT-AAAAAATTGAGAATTTATTTTAAAATT
319 ATCTTAATTTTAGTAATGCTGGTTTTTATTATTTTTTAAAAAAATTGAGAATTTATTTTAAAATT
*
7453020 ATAATAGAAATATAAAATTATTTTAAAACTTAATTCATGATTTGATTTTTG-AA-ATA-TATTCG
384 ATAACAGAAATAT-AAA--A--TT---A--T--TT-A-GATTTGATTTTTGAAATATATTATTCG
*
7453082 CTTTTTAATTTTAGACTCAATTTTTTTATTTCAATTTAGTACTTAAAAAATTGTTCTAATAAAAA
435 CTTTTTAATTTTAGACTCAATTTTTTTATTTCAATCTAGTACTTAAAAAATTGTTCTAATAAAAA
** *
7453147 AATTACCACGTGAC-TTT-T-TTTTGTAAAACATATAAAAAAACATCATGTGACATTTTTTATTG
500 AAACACCACGTGACGTTTATCTTTTGTAAAACATATAAAAAAACATCATGTGACATTTTTCATTG
* * *
7453209 ACTAACACAACTATGAAATATTTTTAACGCCAGTCCAGAAATTCAACAAAAAATCATATTAAAAT
565 ACTAACACAACCATGAAATATTTTTAACGCCAGTCCAAAAATTCAACAAAAAATCATATCAAAAT
7453274 AATATTTT
630 AATATTTT
7453282 AATTATTAAA
Statistics
Matches: 586, Mismatches: 34, Indels: 53
0.87 0.05 0.08
Matches are distributed among these distances:
668 38 0.06
669 11 0.02
671 1 0.00
672 34 0.06
673 52 0.09
674 149 0.25
675 43 0.07
676 46 0.08
677 3 0.01
678 2 0.00
679 80 0.14
680 47 0.08
681 3 0.01
682 13 0.02
683 1 0.00
684 63 0.11
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.42
Consensus pattern (669 bp):
AATACTTAAGAATAAGATGAATCTGTTTATGTTTTGTTACGGAAATTTACTTTGATAAAAGTTTG
GTTATAAATGAATGTGAATGCTTTATTACAAGGAATCAATCACTCAAGGATTTGATTACATGAAC
TCATTCTCACTAAAGTTTTATGAATCCATTTTGTGACAGACTTACTTATTTAATCTAAAATTTTC
CCTAATTTTCCTGCTTATCATATTCACTTGAAAAAAAAAAGAAGGTTAATGATTGGAGATTGAAA
AGAAATTTATAATCATTTGGCTTTCTATATTTTTGGTTTTAAGGCGTAGGAATTGTTTATCTTAA
TTTTAGTAATGCTGGTTTTTATTATTTTTTAAAAAAATTGAGAATTTATTTTAAAATTATAACAG
AAATATAAAATTATTTAGATTTGATTTTTGAAATATATTATTCGCTTTTTAATTTTAGACTCAAT
TTTTTTATTTCAATCTAGTACTTAAAAAATTGTTCTAATAAAAAAAACACCACGTGACGTTTATC
TTTTGTAAAACATATAAAAAAACATCATGTGACATTTTTCATTGACTAACACAACCATGAAATAT
TTTTAACGCCAGTCCAAAAATTCAACAAAAAATCATATCAAAATAATATTTTTCATTGACGTTTT
AATCTTTTTTAACACTTGC
Found at i:7464924 original size:7 final size:7
Alignment explanation
Indices: 7464912--7464938 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7464902 AAAATTTTAA
7464912 AATTTTC
1 AATTTTC
7464919 AATTTTC
1 AATTTTC
7464926 AATTTTC
1 AATTTTC
7464933 AATTTT
1 AATTTT
7464939 ATTAAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (7 bp):
AATTTTC
Found at i:7465099 original size:9 final size:9
Alignment explanation
Indices: 7465079--7465191 Score: 58
Period size: 9 Copynumber: 12.8 Consensus size: 9
7465069 AAAAATAAAA
*
7465079 ATATTTAAT
1 ATATTTTAT
7465088 ATATATTT-T
1 ATAT-TTTAT
7465097 ATATTTTAT
1 ATATTTTAT
*
7465106 ATTTTTTA-
1 ATATTTTAT
*
7465114 ATATTTTTT
1 ATATTTTAT
*
7465123 ATAATTTTTT
1 AT-ATTTTAT
7465133 GA-ATTTT-T
1 -ATATTTTAT
* * *
7465141 AAATTTAAA
1 ATATTTTAT
* *
7465150 ATAATTAAT
1 ATATTTTAT
7465159 ATATATTT-T
1 ATAT-TTTAT
7465168 ATATTTTAT
1 ATATTTTAT
*
7465177 AT-TTTTAA
1 ATATTTTAT
7465185 ATATTTT
1 ATATTTT
7465192 TCATCTAGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
7 1 0.01
8 24 0.29
9 45 0.55
10 11 0.13
11 1 0.01
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (9 bp):
ATATTTTAT
Found at i:7465119 original size:10 final size:9
Alignment explanation
Indices: 7465087--7465132 Score: 51
Period size: 10 Copynumber: 5.1 Consensus size: 9
7465077 AAATATTTAA
*
7465087 TATATATTT
1 TATATTTTT
7465096 TATA--TTT
1 TATATTTTT
7465103 TATATTTTT
1 TATATTTTT
7465112 TAATATTTTT
1 T-ATATTTTT
7465122 TATAATTTTT
1 TAT-ATTTTT
7465132 T
1 T
7465133 GAATTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
7 7 0.21
9 10 0.30
10 16 0.48
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (9 bp):
TATATTTTT
Found at i:7465139 original size:28 final size:26
Alignment explanation
Indices: 7465082--7465146 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 26
7465072 AATAAAAATA
*
7465082 TTTAATATATATTTTATATTTTATATTT
1 TTTAATAT-T-TTTTATATTTTATAATT
*
7465110 TTTAATATTTTTTATAATTTTTTGAATT
1 TTTAATATTTTTTAT-ATTTTAT-AATT
7465138 TTTAA-ATTT
1 TTTAATATTT
7465147 AAAATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 6 0.18
27 11 0.33
28 16 0.48
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (26 bp):
TTTAATATTTTTTATATTTTATAATT
Found at i:7471191 original size:6 final size:6
Alignment explanation
Indices: 7471182--7471249 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
7471172 CAAATTTATT
* * **
7471182 TTTAAA TTTAAA TTT-AT TTTAGA TTTAAA TTTATCTT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA
**
7471231 TTT-GC TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
7471250 CAATCAAATT
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
5 7 0.15
6 35 0.76
8 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (6 bp):
TTTAAA
Found at i:7471207 original size:17 final size:18
Alignment explanation
Indices: 7471173--7471249 Score: 95
Period size: 17 Copynumber: 4.3 Consensus size: 18
7471163 AAATTGATTC
7471173 AAATTTATTTTTAAATTT
1 AAATTTATTTTTAAATTT
*
7471191 AAATTTA-TTTTAGATTT
1 AAATTTATTTTTAAATTT
7471208 AAATTTATCTTTTTAAATTT
1 AAATTTA--TTTTTAAATTT
**
7471228 AAATTT-GCTTTAAATTT
1 AAATTTATTTTTAAATTT
7471245 AAATT
1 AAATT
7471250 CAATCAAATT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
17 30 0.58
18 7 0.13
20 15 0.29
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
AAATTTATTTTTAAATTT
Found at i:7471224 original size:37 final size:35
Alignment explanation
Indices: 7471168--7471249 Score: 110
Period size: 37 Copynumber: 2.3 Consensus size: 35
7471158 GGTTTAAATT
* *
7471168 GATTCAAATTTATTTTTAAATTTAAATTTATTTTA
1 GATTTAAATTTATTTTTAAATTTAAATTTACTTTA
*
7471203 GATTTAAATTTATCTTTTTAAATTTAAATTTGCTTTA
1 GATTTAAATTTA--TTTTTAAATTTAAATTTACTTTA
*
7471240 AATTTAAATT
1 GATTTAAATT
7471250 CAATCAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 11 0.27
37 30 0.73
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (35 bp):
GATTTAAATTTATTTTTAAATTTAAATTTACTTTA
Found at i:7471555 original size:25 final size:25
Alignment explanation
Indices: 7471487--7471555 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
7471477 CACTTGTACT
* *
7471487 CTGCCACCACCAGCTTCAACTTACC
1 CTGCCACCACCAGCTCCAACCTACC
* *
7471512 CTGCCACCACCAACTCCAACCTGCC
1 CTGCCACCACCAGCTCCAACCTACC
7471537 CTGCCACCACC-GCTGCCAA
1 CTGCCACCACCAGCT-CCAA
7471556 GAAGAACCTG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.23, C:0.52, G:0.10, T:0.14
Consensus pattern (25 bp):
CTGCCACCACCAGCTCCAACCTACC
Found at i:7472067 original size:16 final size:16
Alignment explanation
Indices: 7472046--7472078 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7472036 AATGAAATAT
*
7472046 TAATAATATTAATAAA
1 TAATAATAATAATAAA
7472062 TAATAATAATAATAAA
1 TAATAATAATAATAAA
7472078 T
1 T
7472079 TTTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
TAATAATAATAATAAA
Found at i:7473278 original size:90 final size:88
Alignment explanation
Indices: 7473175--7473414 Score: 293
Period size: 90 Copynumber: 2.7 Consensus size: 88
7473165 CCCTAGACTA
* *
7473175 TCTAAAAATTATATTTTAACCCTAAAAATTTCAAAAAATTACATCTTGACCCCTAAACTTTTCCA
1 TCTAAAAATTATATTTTAACCCTAAAAATTTC--AAAATTACATTTTGACCCCAAAACTTTTCCA
*
7473240 AAATTATATTTTAACCCTAAAATTT
64 AAATTATATTTTAACCCTAAAACTT
* * * * *
7473265 TCTAAAAAATATATTTTGACCCTAAAACTTTTTGAAAATTACATTTTGACCCCCAATA-TTTTCC
1 TCTAAAAATTATATTTTAACCCTAAAA--ATTTCAAAATTACATTTTGA-CCCCAAAACTTTTCC
* *
7473329 AAAATTATATTTTGACCTTAAAACTT
63 AAAATTATATTTTAACCCTAAAACTT
* ** *
7473355 TCTAAAAATTACATTTTAACCCCTAAACTTTTCAAAATTATATTTTGACCCCAAAACTTT
1 TCTAAAAATTATATTTTAA-CCCTAAAAATTTCAAAATTACATTTTGACCCCAAAACTTT
7473415 CTAAAAATGA
Statistics
Matches: 128, Mismatches: 17, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
88 7 0.05
89 21 0.16
90 84 0.66
91 13 0.10
92 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.39
Consensus pattern (88 bp):
TCTAAAAATTATATTTTAACCCTAAAAATTTCAAAATTACATTTTGACCCCAAAACTTTTCCAAA
ATTATATTTTAACCCTAAAACTT
Found at i:7473338 original size:60 final size:58
Alignment explanation
Indices: 7473175--7473466 Score: 259
Period size: 60 Copynumber: 4.9 Consensus size: 58
7473165 CCCTAGACTA
* ** * * * *
7473175 TCTAAAAATTATATTTTAACCCTAAAAATTTCAAAAAATTACATCTTGACCCCT-AAACTT
1 TCTAAAAATTACATTTT-ACCCCCAAATTTTC-CAAAATTATATTTTGA-CCCTAAAACTT
* * ** * *
7473235 T-TCCAAAATTATATTTTAACCCTAAAATTTTCTAAAAAATATATTTTGACCCTAAAACTT
1 TCT-AAAAATTACATTTT-ACCCCCAAATTTTC-CAAAATTATATTTTGACCCTAAAACTT
* * *
7473295 TTTGAAAATTACATTTTGACCCCCAATATTTTCCAAAATTATATTTTGACCTTAAAACTT
1 TCTAAAAATTACATTTT-ACCCCCAA-ATTTTCCAAAATTATATTTTGACCCTAAAACTT
* *
7473355 TCTAAAAATTACATTTTAACCCCTAAACTTTT-CAAAATTATATTTTGACCCCAAAACTT
1 TCTAAAAATTACATTTT-ACCCCCAAA-TTTTCCAAAATTATATTTTGACCCTAAAACTT
* *
7473414 TCTAAAAATGACCATTTTACCCCCAAACTTTCCAAAATT-TCATTTTTGACCCT
1 TCTAAAAATTA-CATTTTACCCCCAAATTTTCCAAAATTAT-A-TTTTGACCCT
7473467 GATTTCACCA
Statistics
Matches: 199, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
58 4 0.02
59 57 0.29
60 131 0.66
61 7 0.04
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.38
Consensus pattern (58 bp):
TCTAAAAATTACATTTTACCCCCAAATTTTCCAAAATTATATTTTGACCCTAAAACTT
Found at i:7473436 original size:30 final size:30
Alignment explanation
Indices: 7473175--7473459 Score: 211
Period size: 30 Copynumber: 9.6 Consensus size: 30
7473165 CCCTAGACTA
* * *
7473175 TCTAAAAATTATATTTTAACCCTAAAAATT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
* * * *
7473205 TCAAAAAATTACATCTTGACCCCTAAACTT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
* * * *
7473235 T-TCCAAAATTATATTTTAACCCTAAAATTT
1 TCT-AAAAATTACATTTTAACCCCAAAACTT
* * * *
7473265 TCTAAAAAATATATTTTGACCCTAAAACTT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
* * * * *
7473295 TTTGAAAATTACATTTTGACCCCCAATATTT
1 TCTAAAAATTACATTTT-AACCCCAAAACTT
* * * **
7473326 TC-CAAAATTATATTTTGACCTTAAAACTT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
*
7473355 TCTAAAAATTACATTTTAACCCCTAAACTT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
* * *
7473385 T-TCAAAATTATATTTTGACCCCAAAACTT
1 TCTAAAAATTACATTTTAACCCCAAAACTT
* *
7473414 TCTAAAAATGACCATTTT-ACCCCCAAACTT
1 TCTAAAAATTA-CATTTTAACCCCAAAACTT
* *
7473444 TC-CAAAATTTCATTTT
1 TCTAAAAATTACATTTT
7473460 TGACCCTGAT
Statistics
Matches: 195, Mismatches: 54, Indels: 14
0.74 0.21 0.05
Matches are distributed among these distances:
28 6 0.03
29 39 0.20
30 135 0.69
31 15 0.08
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.38
Consensus pattern (30 bp):
TCTAAAAATTACATTTTAACCCCAAAACTT
Found at i:7473477 original size:29 final size:29
Alignment explanation
Indices: 7473445--7473537 Score: 88
Period size: 29 Copynumber: 3.2 Consensus size: 29
7473435 CCCAAACTTT
*
7473445 CCAAAATTTCATTTTTGACCCT-GATTTCA
1 CCAAAATTCCATTTTTGACCCTCGATTT-A
7473474 CCAAAAATTACCA-TTTT-ACCCTCGAACTTT-
1 CC-AAAATT-CCATTTTTGACCCTCG-A-TTTA
7473504 CCAAAATTCCATTTTTGA-CCTCGATTTTA
1 CCAAAATTCCATTTTTGACCCTCGA-TTTA
7473533 CCAAA
1 CCAAA
7473538 CAAAAAAATT
Statistics
Matches: 54, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
28 7 0.13
29 27 0.50
30 14 0.26
31 3 0.06
32 3 0.06
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (29 bp):
CCAAAATTCCATTTTTGACCCTCGATTTA
Found at i:7473480 original size:59 final size:59
Alignment explanation
Indices: 7473417--7473537 Score: 181
Period size: 59 Copynumber: 2.1 Consensus size: 59
7473407 AAAACTTTCT
*
7473417 AAAAATGACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACC-CTGATTTCACC
1 AAAAATGACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTC-GATTTCACC
* * * *
7473476 AAAAATTACCATTTTACCCTCGAACTTTCCAAAATTCCATTTTTGACCTCGATTTTACC
1 AAAAATGACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACC
7473535 AAA
1 AAA
7473538 CAAAAAAATT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
59 55 0.98
60 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (59 bp):
AAAAATGACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACC
Found at i:7473508 original size:30 final size:29
Alignment explanation
Indices: 7473209--7473523 Score: 134
Period size: 30 Copynumber: 10.6 Consensus size: 29
7473199 AAAATTTCAA
*
7473209 AAAATTA-CATCTTGACCCCTAAACTTTTCC
1 AAAATTACCATTTTGACCCC-AAAC-TTTCC
* * * * *
7473239 AAAATTA-TATTTTAACCCTAAAATTTTCTA
1 AAAATTACCATTTTGACCC-CAAACTTTC-C
* * * **
7473269 AAAAATA-TATTTTGACCCTAAAACTTTTTG
1 AAAATTACCATTTTGACCC-CAAAC-TTTCC
*
7473299 AAAATTA-CATTTTGACCCCCAATATTTTCC
1 AAAATTACCATTTTGA-CCCCAA-ACTTTCC
* ** *
7473329 AAAATTA-TATTTTGACCTTAAAACTTTCTA
1 AAAATTACCATTTTGACC-CCAAACTTTC-C
* *
7473359 AAAATTA-CATTTTAACCCCTAAACTTTTC
1 AAAATTACCATTTTGACCCC-AAACTTTCC
* *
7473388 AAAATTA-TATTTTGACCCCAAAACTTTCTA
1 AAAATTACCATTTTGACCCC-AAACTTTC-C
*
7473418 AAAATGACCATTTT-ACCCCCAAACTTTCC
1 AAAATTACCATTTTGA-CCCCAAACTTTCC
* **
7473447 AAAATT-TCATTTTTGA-CCCTGA-TTTCACC
1 AAAATTACCA-TTTTGACCCCAAACTTT--CC
*
7473476 AAAAATTACCATTTT-ACCCTCGAACTTTCC
1 -AAAATTACCATTTTGACCC-CAAACTTTCC
7473506 AAAATT-CCATTTTTGACC
1 AAAATTACCA-TTTTGACC
7473524 TCGATTTTAC
Statistics
Matches: 220, Mismatches: 43, Indels: 44
0.72 0.14 0.14
Matches are distributed among these distances:
27 3 0.01
28 9 0.04
29 57 0.26
30 128 0.58
31 20 0.09
32 3 0.01
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.37
Consensus pattern (29 bp):
AAAATTACCATTTTGACCCCAAACTTTCC
Found at i:7484971 original size:92 final size:92
Alignment explanation
Indices: 7484810--7485667 Score: 1466
Period size: 92 Copynumber: 9.3 Consensus size: 92
7484800 ATCAAATGTC
**
7484810 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAGCGTCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
* * **
7484875 TTGAAGTTATAATAGAGTTGGATAATA
66 TTGAAGTTATAGTAAAGTTGGATAACG
* * *
7484902 AACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAGTGTCAATTCTTATCCTT
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
*
7484967 TTGAAGTTATAGTAAAGTTGGATAACA
66 TTGAAGTTATAGTAAAGTTGGATAACG
* *
7484994 AACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAATTTCAAATGTCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
7485059 TTGAAGTTATAGTAAAGTTGGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
*
7485086 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCATTTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
7485151 TTGAAGTTATAGTAAAGTTGGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
* *
7485178 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
*
7485243 TTGAAGTTATAGTAAAGTTAGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
* *
7485270 AATATTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCAC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
7485335 TTGAAGTTATAGTAAAGTTGGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
7485362 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
*
7485427 TTGAAGTTATAGTAAAGTTGGATAACA
66 TTGAAGTTATAGTAAAGTTGGATAACG
* * *
7485454 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGACGAAGCTTCAAATATCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
7485519 TTGAAGTTATAGTAAAGTTGGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
* * *
7485546 AACCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGCTTCAAACGTCAATTCTTATCCTC
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
7485611 TTGAAGTTATAGT-AAGTTGGATAACG
66 TTGAAGTTATAGTAAAGTTGGATAACG
* *
7485637 AACCTTTATCTCTCTGAAGTTGTAGTAAGAG
1 AATCTTTATCTCTCTGAAGTTATAGTAAGAG
7485668 TAGGATAAAA
Statistics
Matches: 732, Mismatches: 34, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
91 43 0.06
92 689 0.94
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (92 bp):
AATCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATGAAGTTTCAAATGTCAATTCTTATCCTC
TTGAAGTTATAGTAAAGTTGGATAACG
Found at i:7485680 original size:39 final size:38
Alignment explanation
Indices: 7485603--7485681 Score: 90
Period size: 39 Copynumber: 2.0 Consensus size: 38
7485593 ACGTCAATTC
*
7485603 TTATCCTCTTGAAGTTATAGTAAGTTGGATAACGAACCT
1 TTATCCTCTTGAAGTTATAGTAAGTAGGATAAC-AACCT
*
7485642 TTAT-CTCTCTGAAGTTGTAGTAAGAGTAGGATAA-AACCT
1 TTATCCTCT-TGAAGTTATAGT-A-AGTAGGATAACAACCT
7485681 T
1 T
7485682 GACATCAAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
38 4 0.11
39 21 0.60
40 1 0.03
41 9 0.26
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (38 bp):
TTATCCTCTTGAAGTTATAGTAAGTAGGATAACAACCT
Found at i:7485968 original size:6 final size:6
Alignment explanation
Indices: 7485957--7486023 Score: 50
Period size: 6 Copynumber: 11.3 Consensus size: 6
7485947 TCAAATTTAT
** *
7485957 TTTAAA TTTAAA TTTATCTT TTTAAA TTTAAA TTT--T TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
**
7486005 TTT-GC TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TT
7486024 CAATCAAATT
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
4 3 0.07
5 3 0.07
6 36 0.78
8 4 0.09
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (6 bp):
TTTAAA
Found at i:7485971 original size:17 final size:17
Alignment explanation
Indices: 7485949--7486023 Score: 98
Period size: 17 Copynumber: 4.3 Consensus size: 17
7485939 AAATTGATTC
7485949 AAATTTATTTTAAATTT
1 AAATTTATTTTAAATTT
7485966 AAATTTATCTTTTTAAATTT
1 AAATTTA---TTTTAAATTT
7485986 AAATTT-TTTTAAATTT
1 AAATTTATTTTAAATTT
**
7486002 AAATTTGCTTTAAATTT
1 AAATTTATTTTAAATTT
7486019 AAATT
1 AAATT
7486024 CAATCAAATT
Statistics
Matches: 53, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
16 16 0.30
17 21 0.40
20 16 0.30
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (17 bp):
AAATTTATTTTAAATTT
Found at i:7485982 original size:14 final size:14
Alignment explanation
Indices: 7485963--7486002 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
7485953 TTATTTTAAA
7485963 TTTAAATTTATCTT
1 TTTAAATTTATCTT
*
7485977 TTTAAATTTAAATTTT
1 TTTAAATTT--ATCTT
7485993 TTTAAATTTA
1 TTTAAATTTA
7486003 AATTTGCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 10 0.43
16 13 0.57
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TTTAAATTTATCTT
Found at i:7486315 original size:28 final size:25
Alignment explanation
Indices: 7486256--7486324 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
7486246 CACTTGTACT
* *
7486256 CTGCCACCACCAGCTTCAACTTACC
1 CTGCCACCACCAGCTCCAACCTACC
*
7486281 CTGCCACCACCAGCTCCAACCTGCC
1 CTGCCACCACCAGCTCCAACCTACC
*
7486306 CTGTCACCACC-GCTGCCAA
1 CTGCCACCACCAGCT-CCAA
7486325 GAAGAACCTG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 3 0.08
25 36 0.92
ACGTcount: A:0.22, C:0.51, G:0.12, T:0.16
Consensus pattern (25 bp):
CTGCCACCACCAGCTCCAACCTACC
Found at i:7488017 original size:60 final size:59
Alignment explanation
Indices: 7487945--7488128 Score: 237
Period size: 60 Copynumber: 3.1 Consensus size: 59
7487935 AGACTGTCCA
* * *
7487945 AAAATTATATTTTGACACCAAAACTTTTTAAAAATTGCATTTTAACCCTAAAACTTTTCC
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTTAACCCT-AAACTTTTCC
* * *
7488005 AAAATTATATTTTTACCCCAAAACTTTCTAAAAATTACATTTTGACCCCTAAACTTTT-C
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTT-AACCCTAAACTTTTCC
* * * *
7488064 AAAATTATATTTTAACATCGAAACTTTCTAAAAATTACCATTTTACCCCCAAAC-TTTCC
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTA-CATTTTAACCCTAAACTTTTCC
7488123 AAAATT
1 AAAATT
7488129 TCATTTTTGA
Statistics
Matches: 111, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
58 3 0.03
59 50 0.45
60 53 0.48
61 5 0.05
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.38
Consensus pattern (59 bp):
AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTTAACCCTAAACTTTTCC
Found at i:7488092 original size:59 final size:58
Alignment explanation
Indices: 7487945--7488128 Score: 242
Period size: 59 Copynumber: 3.1 Consensus size: 58
7487935 AGACTGTCCA
* * * *
7487945 AAAATTATATTTTGACACCAAAACTTTTTAAAAATTGCATTTTAACCCTAAAACTTTTCC
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTTACCCCT-AAACTTTT-C
* *
7488005 AAAATTATATTTTTACCCCAAAACTTTCTAAAAATTACATTTTGACCCCTAAACTTTTC
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTT-ACCCCTAAACTTTTC
* * * *
7488064 AAAATTATATTTTAACATCGAAACTTTCTAAAAATTACCATTTTACCCCCAAACTTTCC
1 AAAATTATATTTTAACACCAAAACTTTCTAAAAATTA-CATTTTACCCCTAAACTTTTC
7488123 AAAATT
1 AAAATT
7488129 TCATTTTTGA
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
59 53 0.48
60 53 0.48
61 5 0.05
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.38
Consensus pattern (58 bp):
AAAATTATATTTTAACACCAAAACTTTCTAAAAATTACATTTTACCCCTAAACTTTTC
Found at i:7488118 original size:30 final size:30
Alignment explanation
Indices: 7487944--7488135 Score: 167
Period size: 30 Copynumber: 6.5 Consensus size: 30
7487934 TAGACTGTCC
* * * *
7487944 AAAAATTATATTTTGACACCAAAACTTTTT
1 AAAAATTACATTTTAACCCCAAAACTTTCT
* *
7487974 AAAAATTGCATTTTAACCCTAAAACTTT-T
1 AAAAATTACATTTTAACCCCAAAACTTTCT
* * *
7488003 CCAAAATTATATTTTTACCCCAAAACTTTCT
1 -AAAAATTACATTTTAACCCCAAAACTTTCT
* *
7488034 AAAAATTACATTTTGACCCCTAAACTTT-T
1 AAAAATTACATTTTAACCCCAAAACTTTCT
* * ** *
7488063 CAAAATTATATTTTAACATCGAAACTTTCT
1 AAAAATTACATTTTAACCCCAAAACTTTCT
*
7488093 AAAAATTACCATTTT-ACCCCCAAACTTTC-
1 AAAAATTA-CATTTTAACCCCAAAACTTTCT
* *
7488122 CAAAATTTCATTTT
1 AAAAATTACATTTT
7488136 TGACCTCGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
28 6 0.05
29 30 0.23
30 89 0.68
31 6 0.05
ACGTcount: A:0.39, C:0.20, G:0.02, T:0.39
Consensus pattern (30 bp):
AAAAATTACATTTTAACCCCAAAACTTTCT
Found at i:7488135 original size:59 final size:58
Alignment explanation
Indices: 7488034--7488479 Score: 440
Period size: 59 Copynumber: 7.6 Consensus size: 58
7488024 AAAACTTTCT
* * ** *
7488034 AAAAATTA-CATTTTGACCCCTAAACTTTTCAAAA-TT-ATATTTTAACATCGAAACTTT-CT
1 AAAAATTACCATTTT-ACCCCCAAACTTTCCAAAATTTCAT-TTTTAACCCCG--A-TTTACC
* *
7488093 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGATTT-ACC
* ** * **
7488152 AAAAATTATCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGATTT-ACC
* * * * ** *
7488211 AAAAATTACCATTTTACTCTCGAACTTTCCAAAA-TTC-TATTTTGACCCTTATTTCATC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCAT-TTTTAACCCCGATTT-ACC
* ** *
7488269 AAAAATTACTATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGATTT-ACC
* * * * *
7488328 AAAAATTACCA-TTTA-CCTCAAACTTTCCAAAATTCCATTTTTGATCTCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGATTT-ACC
* * *
7488385 AAAAATTACCATTTTACCCCTAAGCTTTCCAAAATTTCATTTTTGACCCCGATTTTACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGA-TTTACC
7488444 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATT
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATT
7488480 CCCGTTTTGA
Statistics
Matches: 330, Mismatches: 46, Indels: 22
0.83 0.12 0.06
Matches are distributed among these distances:
57 51 0.15
58 56 0.17
59 200 0.61
60 21 0.06
61 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (58 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTAACCCCGATTTACC
Found at i:7488184 original size:30 final size:30
Alignment explanation
Indices: 7488015--7488477 Score: 188
Period size: 29 Copynumber: 15.8 Consensus size: 30
7488005 AAAATTATAT
** *
7488015 TTTTACCCCAAAACTTTCTAAAAATTA-CA
1 TTTTACCCCTGAACTTTCCAAAAATTACCA
* * *
7488044 TTTTGACCCCTAAACTTTTC-AAAATTA-TA
1 TTTT-ACCCCTGAACTTTCCAAAAATTACCA
* * *
7488073 TTTTA-ACATCGAAACTTTCTAAAAATTACCA
1 TTTTACCCCT-G-AACTTTCCAAAAATTACCA
** *
7488104 TTTTACCCCCAAACTTTCC-AAAATT-TCA
1 TTTTACCCCTGAACTTTCCAAAAATTACCA
* *
7488132 TTTTTGACCTC-G-A-TTTCACCAAAAATTATCA
1 -TTTT-ACCCCTGAACTTT--CCAAAAATTACCA
7488163 TTTTACCCCTGAACTTTCC-AAAATT-CCA
1 TTTTACCCCTGAACTTTCCAAAAATTACCA
* *
7488191 TTTTTAACCC--AAATTTCACCAAAAATTACCA
1 -TTTTACCCCTGAACTTT--CCAAAAATTACCA
* *
7488222 TTTTA-CTCTCGAACTTTCC-AAAATT-CTA
1 TTTTACCCCT-GAACTTTCCAAAAATTACCA
* *
7488250 TTTTGA-CCCT-TA-TTTCATCAAAAATTACTA
1 TTTT-ACCCCTGAACTTTC--CAAAAATTACCA
7488280 TTTTACCCCTGAACTTTCC-AAAATT-CCA
1 TTTTACCCCTGAACTTTCCAAAAATTACCA
7488308 TTTTTAACCCC-G-A-TTTCACCAAAAATTACCA
1 -TTTT-ACCCCTGAACTTT--CCAAAAATTACCA
* *
7488339 -TTTACCTC-AAACTTTCC-AAAATT-CCA
1 TTTTACCCCTGAACTTTCCAAAAATTACCA
* *
7488365 TTTTTGATCTC-G-A-TTTCACCAAAAATTACCA
1 -TTTT-ACCCCTGAACTTT--CCAAAAATTACCA
*
7488396 TTTTACCCCT-AAGCTTTCC-AAAATT-TCA
1 TTTTACCCCTGAA-CTTTCCAAAAATTACCA
*
7488424 TTTTTGACCCC-G-ATTTTACCAAAAATTACCA
1 -TTTT-ACCCCTGAACTTT-CCAAAAATTACCA
**
7488455 TTTTACCCCCAAACTTTCCAAAA
1 TTTTACCCCTGAACTTTCCAAAA
7488478 TTCCCGTTTT
Statistics
Matches: 336, Mismatches: 40, Indels: 115
0.68 0.08 0.23
Matches are distributed among these distances:
26 7 0.02
27 23 0.07
28 31 0.09
29 117 0.35
30 116 0.35
31 26 0.08
32 16 0.05
ACGTcount: A:0.34, C:0.26, G:0.03, T:0.37
Consensus pattern (30 bp):
TTTTACCCCTGAACTTTCCAAAAATTACCA
Found at i:7488303 original size:117 final size:118
Alignment explanation
Indices: 7488034--7488521 Score: 577
Period size: 117 Copynumber: 4.2 Consensus size: 118
7488024 AAAACTTTCT
* * * *
7488034 AAAAATTA-CATTTTGACCCCTAAACTTTTCAAAATT--ATATTTTAACATCGAAACTTT--CTA
1 AAAAATTACCATTTT-ACCCCTGAACTTTCCAAAATTCCAT-TTTTAAC--CCAAA-TTTCACCA
*
7488094 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGATTTCACC
61 AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACC
*
7488152 AAAAATTATCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAAT
1 AAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAAT
* * * * * *
7488217 TACCATTTTACTCTCGAACTTTCCAAAATTCTA-TTTTGACC-CTTATTTCATC
66 TACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTC-GATTTCACC
* **
7488269 AAAAATTACTATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAAT
1 AAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAAT
* *
7488334 TACCA-TTTA-CCTCAAACTTTCCAAAATTCCATTTTTGATCTCGATTTCACC
66 TACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACC
* * ** *
7488385 AAAAATTACCATTTTACCCCT-AAGCTTTCCAAAATTTCATTTTTGACCCCGATTTTACCAAAAA
1 AAAAATTACCATTTTACCCCTGAA-CTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAA
** * *
7488449 TTACCATTTTACCCCCAAACTTTCCAAAATTCCCGTTTTGACC-CAATTTCAATC
65 TTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTC-ACC
*
7488503 -AAAATTACCATTTTTCCCC
1 AAAAATTACCATTTTACCCC
7488522 GAGCATCCAA
Statistics
Matches: 326, Mismatches: 32, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
115 21 0.06
116 85 0.26
117 114 0.35
118 91 0.28
119 13 0.04
120 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.37
Consensus pattern (118 bp):
AAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAAT
TACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACC
Found at i:7488379 original size:233 final size:235
Alignment explanation
Indices: 7488093--7488521 Score: 643
Period size: 233 Copynumber: 1.8 Consensus size: 235
7488083 GAAACTTTCT
*
7488093 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGATTTCACCAAAAAT
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACCAAAAAT
*
7488158 TATCATTTTACCCCTGAA-CTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAATTACCA
66 TACCATTTTACCCCT-AAGCTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAATTACCA
* * * * * *
7488222 TTTTACTCTCGAACTTTCCAAAATT-CTATTTTGACCCTTATTTC-ATCAAAAATTACTATTTTA
130 TTTTACCCCCAAACTTTCCAAAATTCCCATTTTGACCC-AATTTCAATC-AAAATTACCATTTTA
7488285 CCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
193 CCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* *
7488328 AAAAATTACCA-TTTA-CCTCAAACTTTCCAAAATTCCATTTTTGATCTCGATTTCACCAAAAAT
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACCAAAAAT
* * ** *
7488391 TACCATTTTACCCCTAAGCTTTCCAAAATTTCATTTTTGACCCCGATTTTACCAAAAATTACCAT
66 TACCATTTTACCCCTAAGCTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAATTACCAT
* *
7488456 TTTACCCCCAAACTTTCCAAAATTCCCGTTTTGACCCAATTTCAATCAAAATTACCATTTTTCCC
131 TTTACCCCCAAACTTTCCAAAATTCCCATTTTGACCCAATTTCAATCAAAATTACCATTTTACCC
7488521 C
196 C
7488522 GAGCATCCAA
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
232 2 0.01
233 144 0.83
234 17 0.10
235 11 0.06
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (235 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCTCGATTTCACCAAAAAT
TACCATTTTACCCCTAAGCTTTCCAAAATTCCATTTTTAACCCAAATTTCACCAAAAATTACCAT
TTTACCCCCAAACTTTCCAAAATTCCCATTTTGACCCAATTTCAATCAAAATTACCATTTTACCC
CTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:7488488 original size:59 final size:59
Alignment explanation
Indices: 7488093--7488521 Score: 535
Period size: 59 Copynumber: 7.3 Consensus size: 59
7488083 GAAACTTTCT
* *
7488093 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
* ** * **
7488152 AAAAATTATCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCAAATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
* * * * ** *
7488211 AAAAATTACCATTTTACTCTCGAACTTTCCAAAATTCTA-TTTTGACCCTTATTTCATC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
* ** *
7488269 AAAAATTACTATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
* * *
7488328 AAAAATTACCA-TTTA-CCTCAAACTTTCCAAAATTCCATTTTTGATCTCGATTTCACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
* * * *
7488385 AAAAATTACCATTTTACCCCTAAGCTTTCCAAAATTTCATTTTTGACCCCGATTTTACC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
** * *
7488444 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCCGTTTTGA-CCCAATTTCAATC
1 AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTC-ACC
*
7488503 -AAAATTACCATTTTTCCCC
1 AAAAATTACCATTTTACCCC
7488522 GAGCATCCAA
Statistics
Matches: 317, Mismatches: 49, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
57 47 0.15
58 82 0.26
59 188 0.59
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.36
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTTGACCCCGATTTCACC
Done.