Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 29 of 163
Found at i:7782243 original size:33 final size:32
Alignment explanation
Indices: 7782206--7782317 Score: 86
Period size: 33 Copynumber: 3.2 Consensus size: 32
7782196 TTTTTTTTTC
7782206 AAATCAAATTCAATTTTCTCTCTTTTTCCTTCA
1 AAATCAAATTCAATTTTCTC-CTTTTTCCTTCA
*
7782239 AAATCAAATGGC--TTTTCATCCATTTTTCTTTCTTTTTC-
1 AAATCAAAT-TCAATTTTC-TCC-TTTTTC---C---TTCA
*
7782277 AAATCAAAATCAATTTTCTCCCTTTTTCCTTCA
1 AAATCAAATTCAATTTTCT-CCTTTTTCCTTCA
7782310 AAATCAAA
1 AAATCAAA
7782318 GCAACACCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 26
0.68 0.03 0.28
Matches are distributed among these distances:
32 9 0.14
33 25 0.40
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 15 0.24
39 10 0.16
ACGTcount: A:0.29, C:0.23, G:0.02, T:0.46
Consensus pattern (32 bp):
AAATCAAATTCAATTTTCTCCTTTTTCCTTCA
Found at i:7782316 original size:71 final size:72
Alignment explanation
Indices: 7782156--7782317 Score: 272
Period size: 71 Copynumber: 2.2 Consensus size: 72
7782146 TTAAATTCAA
* *
7782156 TTTCCTTCAAAATCAAATGGCTTTTCATCCATTTTTCTTTTTTTTTTTTCAAATCAAATTCAATT
1 TTTCCTTCAAAATCAAATGGCTTTTCATCCATTTTTC--TTTTCTTTTTCAAATCAAAATCAATT
*
7782221 TTCTCTCTT
64 TTCTCCCTT
7782230 TTTCCTTCAAAATCAAATGGCTTTTCATCCATTTTTC-TTTCTTTTTCAAATCAAAATCAATTTT
1 TTTCCTTCAAAATCAAATGGCTTTTCATCCATTTTTCTTTTCTTTTTCAAATCAAAATCAATTTT
7782294 CTCCCTT
66 CTCCCTT
7782301 TTTCCTTCAAAATCAAA
1 TTTCCTTCAAAATCAAA
7782318 GCAACACCAT
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
71 48 0.56
74 37 0.44
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.49
Consensus pattern (72 bp):
TTTCCTTCAAAATCAAATGGCTTTTCATCCATTTTTCTTTTCTTTTTCAAATCAAAATCAATTTT
CTCCCTT
Found at i:7782317 original size:38 final size:38
Alignment explanation
Indices: 7782204--7782317 Score: 87
Period size: 38 Copynumber: 3.1 Consensus size: 38
7782194 TTTTTTTTTT
* *
7782204 TCAAATCAAATTCAATTTTCTCTCTTTTTCCTTCAAAA
1 TCAAATCAAAATCAATTTTCTCCCTTTTTCCTTCAAAA
** * * ****
7782242 TCAAAT----GGC--TTTTCATCCATTTTTCTTTCTTTT
1 TCAAATCAAAATCAATTTTC-TCCCTTTTTCCTTCAAAA
7782275 TCAAATCAAAATCAATTTTCTCCCTTTTTCCTTCAAAA
1 TCAAATCAAAATCAATTTTCTCCCTTTTTCCTTCAAAA
7782313 TCAAA
1 TCAAA
7782318 GCAACACCAT
Statistics
Matches: 52, Mismatches: 17, Indels: 14
0.63 0.20 0.17
Matches are distributed among these distances:
32 5 0.10
33 17 0.33
34 1 0.02
37 1 0.02
38 23 0.44
39 5 0.10
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.46
Consensus pattern (38 bp):
TCAAATCAAAATCAATTTTCTCCCTTTTTCCTTCAAAA
Found at i:7783617 original size:50 final size:49
Alignment explanation
Indices: 7783539--7783676 Score: 177
Period size: 50 Copynumber: 2.8 Consensus size: 49
7783529 TGAAGATTGA
* * *
7783539 TAATCTGTCCCTCTATTACTTTAAGGGTATAAGATTTGCATTTGTAGCTT
1 TAATCTG-CCCTCTGTAACTTTAGGGGTATAAGATTTGCATTTGTAGCTT
* *
7783589 TAATCTGCCACTCTGTAACTTTAGGGGTATAAAATTTGCTTTTGTAGCTT
1 TAATCTGCC-CTCTGTAACTTTAGGGGTATAAGATTTGCATTTGTAGCTT
* * *
7783639 CAATCTGCTGCTCTGTAACTTTAGGGGTAAAAGATTTG
1 TAATCTGC-CCTCTGTAACTTTAGGGGTATAAGATTTG
7783677 ATTATTTTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.03
50 75 0.97
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41
Consensus pattern (49 bp):
TAATCTGCCCTCTGTAACTTTAGGGGTATAAGATTTGCATTTGTAGCTT
Found at i:7783792 original size:80 final size:77
Alignment explanation
Indices: 7783701--7784034 Score: 298
Period size: 80 Copynumber: 4.2 Consensus size: 77
7783691 TTCTATGGTC
* * * * *
7783701 GGGGTAAAAGATTAGATTGTCTTCAATCTGCCCCATGGTTGGAGTAAGAGATTGGATTATCTTCA
1 GGGGTAAAAGATTGGATTG-CTTCAATCTGCCTCATGGTAGG-GTAAAAGATTGAATT-TCTTCA
7783766 ATCTGCCATC-TGATT
63 ATCTGCC-TCATGATT
* * * * *
7783781 AGGGTAAAAGATTGGATTGCTTCAATCTACCTTATAGTCAGGGTAAAAGATTGCATTTCTTCAAT
1 GGGGTAAAAGATTGGATTGCTTCAATCTGCCTCATGGT-AGGGTAAAAGATTGAATTTCTTCAAT
*
7783846 CTGCCCCATGATT
65 CTGCCTCATGATT
* * * * *
7783859 GGGGTAAAAGATCGGATGGGCTTTAATCTTGCCTCATGATCGGGGTAAAAGATTGAATTTCTTCA
1 GGGGTAAAAGATTGGAT-TGCTTCAATC-TGCCTCATGGT-AGGGTAAAAGATTGAATTTCTTCA
*
7783924 ATCTGCCTCATGATC
63 ATCTGCCTCATGATT
* * * *
7783939 GGGGTAAAAGATCGACCGGTT--TTCAATCTTGCCCTC-TAGTTAGGGTAAAAGATTGGATTTCT
1 GGGGTAAAAGATTG---GATTGCTTCAATC-TG-CCTCAT-GGTAGGGTAAAAGATTGAATTTCT
* * *
7784001 TCAATCTACCCCATGATC
60 TCAATCTGCCTCATGATT
7784019 GGGGTAAAAGATTGGA
1 GGGGTAAAAGATTGGA
7784035 GGTTGTTACT
Statistics
Matches: 213, Mismatches: 32, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
77 2 0.01
78 33 0.15
79 36 0.17
80 134 0.63
81 6 0.03
83 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (77 bp):
GGGGTAAAAGATTGGATTGCTTCAATCTGCCTCATGGTAGGGTAAAAGATTGAATTTCTTCAATC
TGCCTCATGATT
Found at i:7783824 original size:39 final size:39
Alignment explanation
Indices: 7783699--7784034 Score: 279
Period size: 39 Copynumber: 8.5 Consensus size: 39
7783689 CGTTCTATGG
* *
7783699 TCGGGGTAAAAGATTAGATTGTCTTCAATCTGCCCCATGG
1 TCGGGGTAAAAGATTGGATT-TCTTCAATCTGCCCCATGA
* * * *
7783739 TTGGAGTAAGAGATTGGATTATCTTCAATCTGCCATC-TGA
1 TCGGGGTAAAAGATTGGATT-TCTTCAATCTGCC-CCATGA
** * * **
7783779 TTAGGGTAAAAGATTGGATTGCTTCAATCTACCTTAT-A
1 TCGGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA
* *
7783817 GTCAGGGTAAAAGATTGCATTTCTTCAATCTGCCCCATGA
1 -TCGGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA
* * ** * *
7783857 TTGGGGTAAAAGATCGGATGGGCTTTAATCTTGCCTCATGA
1 TCGGGGTAAAAGATTGGAT-TTCTTCAATC-TGCCCCATGA
* *
7783898 TCGGGGTAAAAGATTGAATTTCTTCAATCTGCCTCATGA
1 TCGGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA
* *
7783937 TCGGGGTAAAAGA-TCGACCGGTT-TTCAATCTTGCCCTC-T-A
1 TCGGGGTAAAAGATTGGA---TTTCTTCAATC-TGCCC-CATGA
** *
7783977 GTTAGGGTAAAAGATTGGATTTCTTCAATCTACCCCATGA
1 -TCGGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA
7784017 TCGGGGTAAAAGATTGGA
1 TCGGGGTAAAAGATTGGA
7784035 GGTTGTTACT
Statistics
Matches: 236, Mismatches: 44, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
38 5 0.02
39 104 0.44
40 79 0.33
41 44 0.19
42 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (39 bp):
TCGGGGTAAAAGATTGGATTTCTTCAATCTGCCCCATGA
Found at i:7784416 original size:100 final size:100
Alignment explanation
Indices: 7784089--7784415 Score: 532
Period size: 100 Copynumber: 3.3 Consensus size: 100
7784079 TCCTTGTGAC
* * *
7784089 TTCAATCTGCCCCTCTACAGCTTTAGGTGAATGAGATTTGTCATTGCGGCTTCATTCTGCCCCTC
1 TTCAATCTGCACCTCTATAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTCATTCTGCCCCTC
*
7784154 TACAGCTTTAGGTGTATGAGATTTGCCTTTGCGGT
66 TACAGCTTTAGGTGTATGAGATTTGCCTTTGTGGT
7784189 TTCAATCTGCACCTCTATAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTCATTCTGCCCCTC
1 TTCAATCTGCACCTCTATAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTCATTCTGCCCCTC
*
7784254 TACAG-TATTAGGTGTATGAGATTTGCCTTTGTAGT
66 TACAGCT-TTAGGTGTATGAGATTTGCCTTTGTGGT
* * *
7784289 TTCAATTTGTACCTCTATAGCTTTAGG-GATATGAGATTTGCCATTGCGGCTTCATTCTACCCCT
1 TTCAATCTGCACCTCTATAGCTTTAGGTGA-ATGAGATTTGCCATTGCGGCTTCATTCTGCCCCT
* *
7784353 CTACAGCTTTAGGTGTATAAGATTTACCTTTGTGGT
65 CTACAGCTTTAGGTGTATGAGATTTGCCTTTGTGGT
7784389 TTCAATCTGCACCTCTATAGCTTTAGG
1 TTCAATCTGCACCTCTATAGCTTTAGG
7784416 GGTAAAAGAT
Statistics
Matches: 211, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
99 3 0.01
100 207 0.98
101 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (100 bp):
TTCAATCTGCACCTCTATAGCTTTAGGTGAATGAGATTTGCCATTGCGGCTTCATTCTGCCCCTC
TACAGCTTTAGGTGTATGAGATTTGCCTTTGTGGT
Found at i:7784426 original size:50 final size:50
Alignment explanation
Indices: 7784088--7784415 Score: 390
Period size: 50 Copynumber: 6.6 Consensus size: 50
7784078 GTCCTTGTGA
* *
7784088 CTTCAATCTGCCCCTCTACAGCTTTAGGTGAATGAGATTTGTCATTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* *
7784138 CTTCATTCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCTTTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * * *
7784188 TTTCAATCTGCACCTCTATAGCTTTAGGTGAATGAGATTTGCCATTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * **
7784238 CTTCATTCTGCCCCTCTACAG-TATTAGGTGTATGAGATTTGCCTTTGTAG
1 CTTCAATCTGCCCCTCTACAGCT-TTAGGTGTATGAGATTTGCCATTGCGG
* * ** *
7784288 TTTCAATTTGTACCTCTATAGCTTTAGG-GATATGAGATTTGCCATTGCGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTG-TATGAGATTTGCCATTGCGG
* * * * * *
7784338 CTTCATTCTACCCCTCTACAGCTTTAGGTGTATAAGATTTACCTTTGTGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
* * *
7784388 TTTCAATCTGCACCTCTATAGCTTTAGG
1 CTTCAATCTGCCCCTCTACAGCTTTAGG
7784416 GGTAAAAGAT
Statistics
Matches: 231, Mismatches: 43, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
49 2 0.01
50 227 0.98
51 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (50 bp):
CTTCAATCTGCCCCTCTACAGCTTTAGGTGTATGAGATTTGCCATTGCGG
Found at i:7792488 original size:8 final size:8
Alignment explanation
Indices: 7792469--7792499 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
7792459 AATGTATGAA
7792469 AATGCAATG
1 AATGC-ATG
7792478 AATGCATG
1 AATGCATG
7792486 AATGCATG
1 AATGCATG
7792494 AATGCA
1 AATGCA
7792500 AATGCAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.77
9 5 0.23
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.23
Consensus pattern (8 bp):
AATGCATG
Found at i:7796888 original size:16 final size:16
Alignment explanation
Indices: 7796871--7796901 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7796861 ATTTTTTAAT
7796871 TTTA-TTATTTATTTA
1 TTTACTTATTTATTTA
7796886 TTTACTTATTTATTTA
1 TTTACTTATTTATTTA
7796902 ATAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTACTTATTTATTTA
Found at i:7799270 original size:38 final size:38
Alignment explanation
Indices: 7799219--7799291 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
7799209 TAATATATAC
** * *
7799219 TAGATAGTTTTTCAATTTTATTTGTAAAAGGATTAGAG
1 TAGATAGTTTTTCAATTCCATTTGGAAAAGAATTAGAG
7799257 TAGATAGTTTTTCAATTCCATTTGGAAAAGAATTA
1 TAGATAGTTTTTCAATTCCATTTGGAAAAGAATTA
7799292 CTTGTCAGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.36, C:0.05, G:0.16, T:0.42
Consensus pattern (38 bp):
TAGATAGTTTTTCAATTCCATTTGGAAAAGAATTAGAG
Found at i:7802320 original size:59 final size:59
Alignment explanation
Indices: 7802254--7802538 Score: 405
Period size: 59 Copynumber: 4.9 Consensus size: 59
7802244 AGAAAATTTA
*
7802254 GGGTTAAAAATGGGATTTT-GAAAGGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
1 GGGTTAAAAATGGAATTTTGGAAA-GTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * * * *
7802313 AGGTTAAAAATGGGATTTTGGAAAGTTCGGGAGTAAAATGATAATTTTTGGTGAAATCG
1 GGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
7802372 GGGTCAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTGATGAAATCG
1 GGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
7802431 GGGTT-AAAATGAAATTTTGGAAAGTTTGGGGATAAAATGGTAATTTTTGGTGAAATTG
1 GGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
* * *
7802489 GGGTTAAAAATGAAATTTTGGAAAGTTT-AGGGTAAAATGGAAATTTTTGG
1 GGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGG
7802539 AAGTTTAGGG
Statistics
Matches: 203, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
58 72 0.35
59 127 0.63
60 4 0.02
ACGTcount: A:0.34, C:0.02, G:0.31, T:0.34
Consensus pattern (59 bp):
GGGTTAAAAATGGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCG
Found at i:7802321 original size:30 final size:30
Alignment explanation
Indices: 7802282--7802497 Score: 143
Period size: 30 Copynumber: 7.3 Consensus size: 30
7802272 TGAAAGGTTT
*
7802282 GGGGGTAAAATGGTAATTTTTGGTGAAATC
1 GGGGTTAAAATGGTAATTTTTGGTGAAATC
* *
7802312 GAGGTTAAAAATGG-GA-TTTT-G-GAAAGTTC
1 GGGGTT-AAAATGGTAATTTTTGGTGAAA--TC
*
7802341 GGGAG-TAAAATGATAATTTTTGGTGAAATC
1 GGG-GTTAAAATGGTAATTTTTGGTGAAATC
* * *
7802371 GGGGTCAAAAATGG-AA-TTTT-G-GAAGGTTT
1 GGGGT-TAAAATGGTAATTTTTGGTGAA--ATC
* *
7802400 GGGGGTAAAATGGTAATTTTTGATGAAATC
1 GGGGTTAAAATGGTAATTTTTGGTGAAATC
* *
7802430 GGGGTTAAAAT-G-AAATTTT-G-GAAAGTTT
1 GGGGTTAAAATGGTAATTTTTGGTGAAA--TC
* *
7802458 GGGGATAAAATGGTAATTTTTGGTGAAATT
1 GGGGTTAAAATGGTAATTTTTGGTGAAATC
7802488 GGGGTTAAAA
1 GGGGTTAAAA
7802498 ATGAAATTTT
Statistics
Matches: 142, Mismatches: 22, Indels: 44
0.68 0.11 0.21
Matches are distributed among these distances:
26 4 0.03
27 7 0.05
28 32 0.23
29 24 0.17
30 49 0.35
31 15 0.11
32 11 0.08
ACGTcount: A:0.34, C:0.02, G:0.31, T:0.33
Consensus pattern (30 bp):
GGGGTTAAAATGGTAATTTTTGGTGAAATC
Found at i:7802506 original size:117 final size:118
Alignment explanation
Indices: 7802254--7802537 Score: 412
Period size: 117 Copynumber: 2.4 Consensus size: 118
7802244 AGAAAATTTA
* * *
7802254 GGGTTAAAAATGGGATTTTGAAAGGTTTGGGGGTAAAATGGTAATTTTTGGTGAAATCGAGGTTA
1 GGGTTAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTA
**
7802319 AAAATGGGATTTTGGAAAGTTCGGGAGTAAAATGATAATTTTTGGTGAAATCG
66 AAAATGAAATTTTGGAAAGTTCGGGAGTAAAATGATAATTTTTGGTGAAATCG
* *
7802372 GGGTCAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTGATGAAATCGGGGTT-
1 GGGTTAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTA
* * *
7802436 AAAATGAAATTTTGGAAAGTTTGGG-GATAAAATGGTAATTTTTGGTGAAATTG
66 AAAATGAAATTTTGGAAAGTTCGGGAG-TAAAATGATAATTTTTGGTGAAATCG
* * * *
7802489 GGGTTAAAAATGAAATTTTGGAAAGTTT-AGGGTAAAATGGAAATTTTTG
1 GGGTTAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTG
7802538 GAAGTTTAGG
Statistics
Matches: 150, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
116 20 0.13
117 71 0.47
118 59 0.39
ACGTcount: A:0.34, C:0.02, G:0.30, T:0.34
Consensus pattern (118 bp):
GGGTTAAAAATGGAATTTTGGAAGGTTTGGGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTA
AAAATGAAATTTTGGAAAGTTCGGGAGTAAAATGATAATTTTTGGTGAAATCG
Found at i:7803436 original size:23 final size:25
Alignment explanation
Indices: 7803405--7803451 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
7803395 TTCGATTCCT
*
7803405 TTTTCATTT-TCTTTATTTTAAAAC
1 TTTTCATTTCACTTTATTTTAAAAC
7803429 TTTT-ATTTCACTTTATTTTAAAA
1 TTTTCATTTCACTTTATTTTAAAA
7803452 AAACTTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.62
Consensus pattern (25 bp):
TTTTCATTTCACTTTATTTTAAAAC
Found at i:7804562 original size:17 final size:17
Alignment explanation
Indices: 7804518--7804572 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
7804508 TTAATTAAAC
7804518 TTTTAAATTT-AAAT--
1 TTTTAAATTTAAAATAA
*
7804532 TTTT-AATTCGAAAATAA
1 TTTTAAATT-TAAAATAA
7804549 TTTTAAATTTAAAATAA
1 TTTTAAATTTAAAATAA
*
7804566 ATTTAAA
1 TTTTAAA
7804573 CTCCAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 4 0.12
14 4 0.12
15 4 0.12
17 17 0.52
18 4 0.12
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TTTTAAATTTAAAATAA
Found at i:7804568 original size:18 final size:19
Alignment explanation
Indices: 7804527--7804569 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
7804517 CTTTTAAATT
*
7804527 TAAATTTTTAATTCGAAAA
1 TAAATTTTAAATTCGAAAA
*
7804546 T-AATTTTAAATT-TAAAA
1 TAAATTTTAAATTCGAAAA
7804563 TAAATTT
1 TAAATTT
7804570 AAACTCCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 5 0.24
18 15 0.71
19 1 0.05
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (19 bp):
TAAATTTTAAATTCGAAAA
Found at i:7805794 original size:23 final size:22
Alignment explanation
Indices: 7805747--7805790 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7805737 ATAAAATTAT
* *
7805747 TAAATATTAAAATAATATAATA
1 TAAATATTAAAAAAATATAAAA
7805769 TAAATATTTAAAAAAAT-TAAAA
1 TAAATA-TTAAAAAAATATAAAA
7805791 ATAATATGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
TAAATATTAAAAAAATATAAAA
Found at i:7810040 original size:12 final size:12
Alignment explanation
Indices: 7810023--7810047 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7810013 TTAAAATCAT
7810023 AAAAATTATAAA
1 AAAAATTATAAA
7810035 AAAAATTATAAA
1 AAAAATTATAAA
7810047 A
1 A
7810048 TTTTTAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAAATTATAAA
Found at i:7810045 original size:21 final size:21
Alignment explanation
Indices: 7810015--7810056 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7810005 AAAACTACTT
7810015 AAAATCATAAAAATTATAAAA
1 AAAATCATAAAAATTATAAAA
* * *
7810036 AAAATTATAAAATTTTTAAAA
1 AAAATCATAAAAATTATAAAA
7810057 GCCTAAAGTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAATCATAAAAATTATAAAA
Found at i:7810335 original size:30 final size:31
Alignment explanation
Indices: 7810276--7810358 Score: 105
Period size: 30 Copynumber: 2.6 Consensus size: 31
7810266 GACTATCATG
* *
7810276 GAGGGCTTAATTGATTTATTATTATTATTTTAC
1 GAGGGCTTAATTAATTT-TTA-TATTATTTTAA
7810309 GAGGGCTTAATTAATTTTTA-ATTATTTTAA
1 GAGGGCTTAATTAATTTTTATATTATTTTAA
* *
7810339 GAGAGCTTAATTTATTTTTA
1 GAGGGCTTAATTAATTTTTA
7810359 GGATTATATA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
30 27 0.59
32 3 0.07
33 16 0.35
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (31 bp):
GAGGGCTTAATTAATTTTTATATTATTTTAA
Found at i:7810430 original size:25 final size:24
Alignment explanation
Indices: 7810381--7810430 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
7810371 AATTCCCAAG
*
7810381 AAATTATAAAAATTTTAAAATATA
1 AAATTATAAAAATTATAAAATATA
7810405 AAATTATAGAAAATTATATAAA-ATA
1 AAATTATA-AAAATTATA-AAATATA
7810430 A
1 A
7810431 CTAAAATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 12 0.52
26 3 0.13
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATTATAAAAATTATAAAATATA
Found at i:7810550 original size:37 final size:36
Alignment explanation
Indices: 7810494--7810567 Score: 85
Period size: 37 Copynumber: 2.0 Consensus size: 36
7810484 TTATTAAAAT
**
7810494 ATTATAAAAAATTAAAAATTATGGAAAATATATCAAA
1 ATTATAAAAAATTAAAAATTATAAAAAATATAT-AAA
* * * *
7810531 ATTATTAAACATTATAAATTTTAAAAAATATATAAA
1 ATTATAAAAAATTAAAAATTATAAAAAATATATAAA
7810567 A
1 A
7810568 CCATTAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
36 4 0.13
37 27 0.87
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (36 bp):
ATTATAAAAAATTAAAAATTATAAAAAATATATAAA
Found at i:7810999 original size:19 final size:18
Alignment explanation
Indices: 7810955--7811001 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 18
7810945 TTTTAGAACA
7810955 TTATAAAAAGTATATAAG
1 TTATAAAAAGTATATAAG
*
7810973 TTACTAAAAATTAT-TACATG
1 TTA-TAAAAAGTATATA-A-G
7810993 TTATAAAAA
1 TTATAAAAA
7811002 AATAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.20
19 16 0.64
20 4 0.16
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (18 bp):
TTATAAAAAGTATATAAG
Found at i:7811114 original size:34 final size:32
Alignment explanation
Indices: 7811070--7811152 Score: 98
Period size: 30 Copynumber: 2.6 Consensus size: 32
7811060 TATAATCCTT
* **
7811070 AAAAGTCAATTAAGTCCTCTTAAAATAATTTTAA
1 AAAAATCAATTAAGTCCTCTTAAAA-AATAAT-A
*
7811104 AAAAATCAATTAAG-CC-CTTGAAAAATAATA
1 AAAAATCAATTAAGTCCTCTTAAAAAATAATA
7811134 AAAAATCAATTAAGTCCTC
1 AAAAATCAATTAAGTCCTC
7811153 CACATCAACG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
30 15 0.35
31 6 0.14
32 7 0.16
33 2 0.05
34 13 0.30
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (32 bp):
AAAAATCAATTAAGTCCTCTTAAAAAATAATA
Found at i:7816419 original size:17 final size:18
Alignment explanation
Indices: 7816397--7816430 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7816387 CATTTTTAAA
*
7816397 ATTAAAATTAT-ATTTTT
1 ATTAAAAATATAATTTTT
7816414 ATTAAAAATATAATTTT
1 ATTAAAAATATAATTTT
7816431 CCTTACGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAAAATATAATTTTT
Found at i:7817643 original size:12 final size:12
Alignment explanation
Indices: 7817626--7817650 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7817616 TGTGATTAGT
7817626 ATAAAAATAATA
1 ATAAAAATAATA
7817638 ATAAAAATAATA
1 ATAAAAATAATA
7817650 A
1 A
7817651 AATTAAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAATAATA
Found at i:7823077 original size:16 final size:17
Alignment explanation
Indices: 7823028--7823095 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
7823018 GGATTAAAAT
*
7823028 TTTGATTTTAAA-TTAAG
1 TTTGA-TTTAAATTTAAA
* * *
7823045 TTTGAATTGATTTTAAA
1 TTTGATTTAAATTTAAA
7823062 TTT-ATTTAAATTTAAA
1 TTTGATTTAAATTTAAA
*
7823078 TTTGTTTTAAATTTAAA
1 TTTGATTTAAATTTAAA
7823095 T
1 T
7823096 ACATTTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 16 0.39
17 25 0.61
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (17 bp):
TTTGATTTAAATTTAAA
Found at i:7823079 original size:27 final size:27
Alignment explanation
Indices: 7823055--7823115 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
7823045 TTTGAATTGA
7823055 TTTTAAATTTATTTAAATTTAAATTTG
1 TTTTAAATTTATTTAAATTTAAATTTG
** * * *
7823082 TTTTAAATTTAAATACATTTAAAATAG
1 TTTTAAATTTATTTAAATTTAAATTTG
7823109 TTTTAAA
1 TTTTAAA
7823116 CCTAAAATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (27 bp):
TTTTAAATTTATTTAAATTTAAATTTG
Found at i:7823902 original size:18 final size:18
Alignment explanation
Indices: 7823881--7823915 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7823871 TTAAATAAGA
7823881 TAATAAATAA-TAATATTT
1 TAAT-AATAATTAATATTT
7823899 TAATAATAATTAATATT
1 TAATAATAATTAATATT
7823916 AATATTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATAATAATTAATATTT
Found at i:7825080 original size:28 final size:29
Alignment explanation
Indices: 7825032--7825161 Score: 95
Period size: 28 Copynumber: 4.5 Consensus size: 29
7825022 CTAAACTTCC
* * *
7825032 CAAAAATCATATTTTGACCCCGAAACCTT
1 CAAAAATTACATTTTGACCCCTAAACCTT
* *
7825061 CAAAAATTACATTTT-ACCCCTAAGCTTT
1 CAAAAATTACATTTTGACCCCTAAACCTT
* * ** **
7825089 CTAAAATTCCATTTTGA-CCCTAATTTCAC
1 CAAAAATTACATTTTGACCCCTAA-ACCTT
*
7825118 CAAAAATTACCATTTT-ACCCCTAAACTTT
1 CAAAAATTA-CATTTTGACCCCTAAACCTT
* *
7825147 CCAAAATTCCATTTT
1 CAAAAATTACATTTT
7825162 TAACCCTGAT
Statistics
Matches: 76, Mismatches: 21, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
28 35 0.46
29 29 0.38
30 12 0.16
ACGTcount: A:0.35, C:0.27, G:0.03, T:0.35
Consensus pattern (29 bp):
CAAAAATTACATTTTGACCCCTAAACCTT
Found at i:7825094 original size:29 final size:27
Alignment explanation
Indices: 7825032--7825213 Score: 100
Period size: 29 Copynumber: 6.3 Consensus size: 27
7825022 CTAAACTTCC
* * * *
7825032 CAAAAATCATATTTTGACCCCGAAACCTT
1 CAAAAATTACATTTT-ACCCC-TAACTTT
7825061 CAAAAATTACATTTTACCCCTAAGCTTT
1 CAAAAATTACATTTTACCCCTAA-CTTT
* *
7825089 CTAAAATTCCATTTTGA-CCCTAA-TTT
1 CAAAAATTACATTTT-ACCCCTAACTTT
7825115 CACCAAAAATTACCATTTTACCCCTAAACTTT
1 ---CAAAAATTA-CATTTTACCCCT-AACTTT
* * * *
7825147 CCAAAATTCCATTTTTAACCCTGA-TTT
1 CAAAAATTACA-TTTTACCCCTAACTTT
*
7825174 CACCAAAAATTACCATTTTACCCCCAAACTTT
1 ---CAAAAATTA-CATTTTA-CCCCTAACTTT
*
7825206 CCAAAATT
1 CAAAAATT
7825214 CCTTTTTTGA
Statistics
Matches: 119, Mismatches: 18, Indels: 32
0.70 0.11 0.19
Matches are distributed among these distances:
26 3 0.03
27 5 0.04
28 30 0.25
29 45 0.38
30 22 0.18
31 8 0.07
32 6 0.05
ACGTcount: A:0.36, C:0.28, G:0.03, T:0.34
Consensus pattern (27 bp):
CAAAAATTACATTTTACCCCTAACTTT
Found at i:7825133 original size:30 final size:28
Alignment explanation
Indices: 7825091--7825196 Score: 110
Period size: 29 Copynumber: 3.6 Consensus size: 28
7825081 TAAGCTTTCT
7825091 AAAATTCCATTTTGACCCTAATTTCACCA
1 AAAATTCCATTTT-ACCCTAATTTCACCA
7825120 AAAATTACCATTTTACCCCTAAACTTT--CC-
1 AAAATT-CCATTTTA-CCCT-AA-TTTCACCA
*
7825149 AAAATTCCATTTTTAACCCTGATTTCACCA
1 AAAATTCCA-TTTT-ACCCTAATTTCACCA
7825179 AAAATTACCATTTTACCC
1 AAAATT-CCATTTTACCC
7825197 CCAAACTTTC
Statistics
Matches: 66, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
27 3 0.05
28 4 0.06
29 27 0.41
30 24 0.36
31 5 0.08
32 3 0.05
ACGTcount: A:0.35, C:0.28, G:0.02, T:0.35
Consensus pattern (28 bp):
AAAATTCCATTTTACCCTAATTTCACCA
Found at i:7825196 original size:59 final size:59
Alignment explanation
Indices: 7825061--7825256 Score: 290
Period size: 59 Copynumber: 3.4 Consensus size: 59
7825051 CCGAAACCTT
* * *
7825061 CAAAAATTA-CATTTTACCCCTAAGCTTTCTAAAATTCCA-TTTTGACCCTAATTTCAC
1 CAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTGATTTCAC
*
7825118 CAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCTGATTTCAC
1 CAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTGATTTCAC
* * *
7825177 CAAAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCTTTTTTGA-CCTCGATTTTAC
1 CAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCT-GATTTCAC
*
7825236 CAAAAATTACCATTTTGCCCC
1 CAAAAATTACCATTTTACCCC
7825257 ATGGGCGTCC
Statistics
Matches: 127, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
57 9 0.07
58 31 0.24
59 87 0.69
ACGTcount: A:0.33, C:0.29, G:0.03, T:0.36
Consensus pattern (59 bp):
CAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTGACCCTGATTTCAC
Found at i:7825252 original size:30 final size:29
Alignment explanation
Indices: 7825091--7825252 Score: 104
Period size: 30 Copynumber: 5.5 Consensus size: 29
7825081 TAAGCTTTCT
*
7825091 AAAATTCCATTTTGACCCTAATTTCACCA
1 AAAATTCCATTTTGACCCTAATTTTACCA
*
7825120 AAAATTACCATTTT-ACCCCTAAACTTT-CC-
1 AAAATT-CCATTTTGA-CCCT-AATTTTACCA
* * *
7825149 AAAATTCCATTTTTAACCCTGATTTCACCA
1 AAAATTCCA-TTTTGACCCTAATTTTACCA
* *
7825179 AAAATTACCATTTT-ACCCCCAAACTTT-CC-
1 AAAATT-CCATTTTGA--CCCTAATTTTACCA
* *
7825208 AAAATTCCTTTTTTGA-CCTCGATTTTACCA
1 AAAATTCC-ATTTTGACCCT-AATTTTACCA
7825238 AAAATTACCATTTTG
1 AAAATT-CCATTTTG
7825253 CCCCATGGGC
Statistics
Matches: 103, Mismatches: 14, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
27 2 0.02
28 12 0.12
29 36 0.35
30 38 0.37
31 15 0.15
ACGTcount: A:0.33, C:0.27, G:0.03, T:0.36
Consensus pattern (29 bp):
AAAATTCCATTTTGACCCTAATTTTACCA
Found at i:7826588 original size:29 final size:30
Alignment explanation
Indices: 7826525--7826600 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 30
7826515 TAATTTCGAC
*
7826525 CAACTTTAGAAAAATTACAGTCATGCCCTT
1 CAACTTTAGAAAAATTACAGCCATGCCCTT
* * *
7826555 AAACTTTAGAAAATTTGCA-CCGATGCCC-T
1 CAACTTTAGAAAAATTACAGCC-ATGCCCTT
7826584 CAACTTTA-ATAAAATTA
1 CAACTTTAGA-AAAATTA
7826601 TGGTAAACAC
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
28 1 0.03
29 14 0.38
30 22 0.59
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (30 bp):
CAACTTTAGAAAAATTACAGCCATGCCCTT
Found at i:7826809 original size:6 final size:6
Alignment explanation
Indices: 7826800--7826826 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7826790 CTTATCCTTT
7826800 TTTATA TTTATA TTTATA TTTATA TTT
1 TTTATA TTTATA TTTATA TTTATA TTT
7826827 TTTTCCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTATA
Found at i:7831408 original size:29 final size:29
Alignment explanation
Indices: 7831349--7831408 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
7831339 GAACCCTTGC
*
7831349 TAATCTTTAGAGTCCCACTTTCAATTATG
1 TAATCTTTAGAGTCCCACTTTCAACTATG
* *
7831378 TAATCTTTAGAGTCTCACTTTCAACTGTG
1 TAATCTTTAGAGTCCCACTTTCAACTATG
7831407 TA
1 TA
7831409 CTTGTACCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.42
Consensus pattern (29 bp):
TAATCTTTAGAGTCCCACTTTCAACTATG
Found at i:7843748 original size:24 final size:24
Alignment explanation
Indices: 7843720--7843780 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
7843710 AAAAATAATC
*
7843720 TTTCAGTTAAACTCTGTTTATCTG
1 TTTCAGTTAAACTCTATTTATCTG
* *
7843744 TTTCAATTAAACTCTATTTATTTG
1 TTTCAGTTAAACTCTATTTATCTG
* *
7843768 TTTGAGTCAAACT
1 TTTCAGTTAAACT
7843781 TTAATTAGTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.10, T:0.49
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTATCTG
Found at i:7848088 original size:28 final size:30
Alignment explanation
Indices: 7848044--7848100 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
7848034 TAAAACGAGT
*
7848044 AACAAAAAAATAGTTTAGGAATC-ACTTGC
1 AACAAAAAAATAATTTAGGAATCAACTTGC
7848073 AACAAAAAAA-AATTTAGGAATCAACTTG
1 AACAAAAAAATAATTTAGGAATCAACTTG
7848101 AGAAAAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (30 bp):
AACAAAAAAATAATTTAGGAATCAACTTGC
Found at i:7848107 original size:28 final size:27
Alignment explanation
Indices: 7848047--7848100 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
7848037 AACGAGTAAC
* *
7848047 AAAAAAATAGTTTAGGAATCACTTGCA
1 AAAAAAAAAATTTAGGAATCACTTGCA
7848074 ACAAAAAAAAATTTAGGAATCAACTTG
1 A-AAAAAAAAATTTAGGAATC-ACTTG
7848101 AGAAAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 17 0.74
29 5 0.22
ACGTcount: A:0.52, C:0.11, G:0.13, T:0.24
Consensus pattern (27 bp):
AAAAAAAAAATTTAGGAATCACTTGCA
Found at i:7848907 original size:15 final size:14
Alignment explanation
Indices: 7848871--7848918 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
7848861 CACGAAACAA
7848871 TAAATTTTATTTTT
1 TAAATTTTATTTTT
7848885 TAAATTTTATTTTAT
1 TAAATTTTATTTT-T
*
7848900 T-AATTTT-TTTAT
1 TAAATTTTATTTTT
7848912 TAAATTT
1 TAAATTT
7848919 GACTATTCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 2 0.06
13 8 0.26
14 19 0.61
15 2 0.06
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TAAATTTTATTTTT
Found at i:7859919 original size:17 final size:16
Alignment explanation
Indices: 7859892--7859935 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
7859882 TTTTATAAAA
7859892 ATTTAAAAATTTTAATTT
1 ATTT-AAAATTTT-ATTT
7859910 ATTTAAAATTTTATTT
1 ATTTAAAATTTTATTT
7859926 -TTATAAAATT
1 ATT-TAAAATT
7859936 AAATTATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 11 0.44
17 8 0.32
18 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTAAAATTTTATTT
Found at i:7867639 original size:59 final size:59
Alignment explanation
Indices: 7867570--7868053 Score: 579
Period size: 59 Copynumber: 8.2 Consensus size: 59
7867560 TCGCGGGGGC
* * * *
7867570 AAAATGGTAATTTTCGGTGAAATCGAGGTCAAAAAGGGAATTTTGGAAAATTCAAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGAGGGT
* * * *
7867629 AAAATAGTAATTTTTGGTTAAATCGGGGTTAAAAATGGAATTTT-GAAAAGTTTGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAA-TTCGAGGGT
* * * *
7867688 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTGGAAAGTTCGGGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGAGGGT
* * *
7867747 AAATTGGTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTGGAAAGTTC-AGGGGT
1 AAAATGGTAATTTTTGGTGAAATC-GAGGTTAAAAATGGAATTTTGGAAAATTCGA-GGGT
* **
7867806 AAAATGGTAATTTTTGGTGGAATCGAGGTTAAAGATAT-G-ATTTCAGAAAATTCG-GGGTT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAA-A-ATGGAATTTTGGAAAATTCGAGGG-T
* * *
7867865 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATATG-A-TTTCGAAAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAAT-GGAATTTTGGAAAA-TTCGAGGGT
* * * * *
7867924 AAAATGGTAATTTTTAGTGAAACCGAGGTTAAAGATGGAATTTTAGAAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGAGGGT
* *
7867983 AAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
1 AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGAGGGT
*
7868042 AAAATAGTAATT
1 AAAATGGTAATT
7868054 CTTGTACAGT
Statistics
Matches: 366, Mismatches: 44, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
57 2 0.01
58 18 0.05
59 327 0.89
60 17 0.05
61 2 0.01
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (59 bp):
AAAATGGTAATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGAGGGT
Found at i:7867662 original size:30 final size:30
Alignment explanation
Indices: 7867628--7868016 Score: 114
Period size: 30 Copynumber: 13.2 Consensus size: 30
7867618 AATTCAAGGG
*
7867628 TAAAATAGTAATTTTTGGTTAAATCGGGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
* * *
7867658 TAAAA-ATGGAA-TTTT-G-AAAAGTTTGAGGG-
1 TAAAATA-GTAATTTTTGGTGAAA--TCG-GGGT
* * *
7867687 TAAAATGGTAATTTTTAGTGAAATCGAGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
* *
7867717 TAAAGAT-GGAA-TTTT-G-GAAAGTTCGGGGG
1 TAAA-ATAGTAATTTTTGGTGAAA--TCGGGGT
* *
7867746 TAAATTGGTAATTTTTGGTGAAA-CTGGGGT
1 TAAAATAGTAATTTTTGGTGAAATC-GGGGT
*
7867776 TAAAA-ATGGAA-TTTT-G-GAAAGTTCAGGGG-
1 TAAAATA-GTAATTTTTGGTGAAA--TC-GGGGT
* * *
7867805 TAAAATGGTAATTTTTGGTGGAATCGAGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
* ** *
7867835 TAAAGATA-TGA-TTTCAG-AAAATTCGGGGT
1 TAAA-ATAGTAATTTTTGGTGAAA-TCGGGGT
*
7867864 TAAAATGGTAATTTTTGGTGAAATCGGGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
* * *
7867894 TAAAA-A-T-ATGATTTCG-AAAAGTTCGAGGG-
1 TAAAATAGTAAT-TTTTGGTGAAA--TCG-GGGT
* * * *
7867923 TAAAATGGTAATTTTTAGTGAAACCGAGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
* *
7867953 TAAAGAT-GGAA-TTTT--AGAAAGTTCGAGGG-
1 TAAA-ATAGTAATTTTTGGTGAAA--TCG-GGGT
*
7867982 TAAAATGGTAATTTTTGGTGAAATCGGGGT
1 TAAAATAGTAATTTTTGGTGAAATCGGGGT
7868012 TAAAA
1 TAAAA
7868017 ATGGAATTTT
Statistics
Matches: 260, Mismatches: 50, Indels: 98
0.64 0.12 0.24
Matches are distributed among these distances:
27 20 0.08
28 15 0.06
29 91 0.35
30 98 0.38
31 17 0.07
32 19 0.07
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (30 bp):
TAAAATAGTAATTTTTGGTGAAATCGGGGT
Found at i:7867757 original size:118 final size:118
Alignment explanation
Indices: 7867570--7868053 Score: 663
Period size: 118 Copynumber: 4.1 Consensus size: 118
7867560 TCGCGGGGGC
** * * * * * *
7867570 AAAATGGTAATTTTCGGTGAAATCGAGGTCAAAAAGGGAATTTTGGAAAATTCAAGGGTAAAATA
1 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTAGAAAATTCGAGGGTAAAATG
* *
7867635 GTAATTTTTGGTTAAATCGGGGTTAAAAATGGAATTTTGAAAAGTTTGAGGGT
66 GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGAAAAGTTCGAGGGT
* * * *
7867688 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTGGAAAGTTCGGGGGTAAATTG
1 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTAGAAAATTCGAGGGTAAAATG
*
7867753 GTAATTTTTGGTGAAA-CTGGGGTTAAAAATGGAATTTTGGAAAGTTC-AGGGGT
66 GTAATTTTTGGTGAAATC-GGGGTTAAAAATGGAATTTTGAAAAGTTCGA-GGGT
* * * *
7867806 AAAATGGTAATTTTTGGTGGAATCGAGGTTAAAGATATG-ATTTCAGAAAATTCG-GGGTTAAAA
1 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGAT-GGAATTTTAGAAAATTCGAGGG-TAAAA
* *
7867869 TGGTAATTTTTGGTGAAATCGGGGTTAAAAATATG-ATTTCGAAAAGTTCGAGGGT
64 TGGTAATTTTTGGTGAAATCGGGGTTAAAAAT-GGAATTTTGAAAAGTTCGAGGGT
* *
7867924 AAAATGGTAATTTTTAGTGAAACCGAGGTTAAAGATGGAATTTTAGAAAGTTCGAGGGTAAAATG
1 AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTAGAAAATTCGAGGGTAAAATG
*
7867989 GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGGAAAGTTCGAGGGT
66 GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGAAAAGTTCGAGGGT
*
7868042 AAAATAGTAATT
1 AAAATGGTAATT
7868054 CTTGTACAGT
Statistics
Matches: 323, Mismatches: 33, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
117 7 0.02
118 309 0.96
119 7 0.02
ACGTcount: A:0.36, C:0.04, G:0.28, T:0.32
Consensus pattern (118 bp):
AAAATGGTAATTTTTAGTGAAATCGAGGTTAAAGATGGAATTTTAGAAAATTCGAGGGTAAAATG
GTAATTTTTGGTGAAATCGGGGTTAAAAATGGAATTTTGAAAAGTTCGAGGGT
Found at i:7868378 original size:161 final size:161
Alignment explanation
Indices: 7868199--7868547 Score: 567
Period size: 161 Copynumber: 2.2 Consensus size: 161
7868189 GAATTGATTT
* * *
7868199 AAGGACCAAATTAAAACAAATTAAAAATAAAAGGGACTAATTACACAAATAAGCCGAAATAGTGC
1 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
* * * *
7868264 CACGTGGCAGCCTATGGTGCATTTAA-AATGTCAAATGATTAAATTGAAAAGTAAACAAAATTAC
66 CACGTGGCAGCCTATAGTGCATTCAAGAA-GTCAAAGGATCAAATTGAAAAGTAAACAAAATTAC
7868328 TGGGCCAAATTAAAAATAAGTAAAAGTATGAA
130 TGGGCCAAATTAAAAATAAGTAAAAGTATGAA
7868360 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
1 AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
* * *
7868425 CACGTGGTAGCCTCTAGTGCATTCAAGAAGTTAAAGGATCAAATTGAAAAGTAAACAAAATTACT
66 CACGTGGCAGCCTATAGTGCATTCAAGAAGTCAAAGGATCAAATTGAAAAGTAAACAAAATTACT
*
7868490 GGGCCAAATTAAAAATAATTAAAAGTATGAA
131 GGGCCAAATTAAAAATAAGTAAAAGTATGAA
*
7868521 AAGGACTAAATTAAAAC-AATAAAAAAT
1 AAGGACTAAATTAAAACAAATTAAAAAT
7868548 GCGGAAGAAC
Statistics
Matches: 175, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
160 9 0.05
161 164 0.94
162 2 0.01
ACGTcount: A:0.52, C:0.12, G:0.15, T:0.21
Consensus pattern (161 bp):
AAGGACTAAATTAAAACAAATTAAAAATAAAAGAGACTAATTACACAAATAAGCCAAAATAGTGC
CACGTGGCAGCCTATAGTGCATTCAAGAAGTCAAAGGATCAAATTGAAAAGTAAACAAAATTACT
GGGCCAAATTAAAAATAAGTAAAAGTATGAA
Found at i:7870030 original size:17 final size:17
Alignment explanation
Indices: 7869990--7870064 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
7869980 GCTTTTTAAT
* *
7869990 TTTAATTTTAAAAT-TA
1 TTTAAATTTAAAATAAA
*
7870006 TTTCAAATTTAAACTAAA
1 TTT-AAATTTAAAATAAA
* *
7870024 TTTAAATTTCAAGTAAA
1 TTTAAATTTAAAATAAA
*
7870041 TTTAATTTTAGAAATAAA
1 TTTAAATTTA-AAATAAA
7870059 TTTAAA
1 TTTAAA
7870065 AATCATTTTA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
16 3 0.06
17 29 0.62
18 15 0.32
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:7870443 original size:13 final size:13
Alignment explanation
Indices: 7870425--7870474 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
7870415 CAACAAATGA
7870425 TTTTAAAATTATT
1 TTTTAAAATTATT
* *
7870438 TTTTAAATATAAAAT
1 TTTTAAA-AT-TATT
*
7870453 TATTAAAATTATT
1 TTTTAAAATTATT
7870466 TTTTAAAAT
1 TTTTAAAAT
7870475 ATAAAATTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
13 17 0.59
14 4 0.14
15 8 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTTAAAATTATT
Found at i:7870467 original size:28 final size:29
Alignment explanation
Indices: 7870427--7870490 Score: 121
Period size: 29 Copynumber: 2.2 Consensus size: 29
7870417 ACAAATGATT
7870427 TTAAAATTATTTTTT-AAATATAAAATTA
1 TTAAAATTATTTTTTAAAATATAAAATTA
7870455 TTAAAATTATTTTTTAAAATATAAAATTA
1 TTAAAATTATTTTTTAAAATATAAAATTA
7870484 TTAAAAT
1 TTAAAAT
7870491 CATCATCCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 15 0.43
29 20 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAAATTATTTTTTAAAATATAAAATTA
Found at i:7870489 original size:16 final size:16
Alignment explanation
Indices: 7870442--7870490 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
7870432 ATTATTTTTT
7870442 AAATATAAAATTATTA
1 AAATATAAAATTATTA
* *
7870458 AAAT-T--ATTTTTTA
1 AAATATAAAATTATTA
7870471 AAATATAAAATTATTA
1 AAATATAAAATTATTA
7870487 AAAT
1 AAAT
7870491 CATCATCCTG
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 10 0.38
14 1 0.04
15 1 0.04
16 14 0.54
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATATAAAATTATTA
Found at i:7870640 original size:43 final size:41
Alignment explanation
Indices: 7870558--7870651 Score: 138
Period size: 43 Copynumber: 2.3 Consensus size: 41
7870548 GGCCCTTCCC
*
7870558 CTTCTTA-TTT-TTTTCGGTGGATTTTTTTTTGTTTCCCTT
1 CTTCTTATTTTCTTTTCGGTGGATTTTTTTTTATTTCCCTT
*
7870597 CTTCTTATTTTCTTTTCGGTGGGTTTTTTTTTCTATTTCCCTT
1 CTTCTTATTTTCTTTTCGGT-GGATTTTTTTT-TATTTCCCTT
7870640 CTTCTTATTTTC
1 CTTCTTATTTTC
7870652 CTTATTCTTA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
39 7 0.14
40 3 0.06
41 8 0.16
42 10 0.20
43 21 0.43
ACGTcount: A:0.05, C:0.18, G:0.11, T:0.66
Consensus pattern (41 bp):
CTTCTTATTTTCTTTTCGGTGGATTTTTTTTTATTTCCCTT
Found at i:7870654 original size:15 final size:14
Alignment explanation
Indices: 7870625--7870673 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
7870615 GTGGGTTTTT
*
7870625 TTTTC-TATTTCCC
1 TTTTCTTATTTACC
*
7870638 TTCTTCTTATTTTCC
1 TT-TTCTTATTTACC
7870653 TTATTCTTATTTACC
1 TT-TTCTTATTTACC
7870668 TTTTCT
1 TTTTCT
7870674 AGATAGACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 2 0.06
14 7 0.23
15 22 0.71
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTTCTTATTTACC
Found at i:7871503 original size:6 final size:6
Alignment explanation
Indices: 7871475--7871533 Score: 51
Period size: 6 Copynumber: 11.0 Consensus size: 6
7871465 ATTTTGATTT
* *
7871475 TTTAAG TTTAAA -TT-AA TTT--A TTTAAA TTT-AT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7871518 -TTAAA -TTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
7871534 ATGATATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
4 6 0.13
5 18 0.40
6 21 0.47
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (6 bp):
TTTAAA
Found at i:7871510 original size:20 final size:20
Alignment explanation
Indices: 7871465--7871515 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
7871455 CGGGCCTTGG
* *
7871465 ATTTTGATTT-TTTAAGTTT
1 ATTTTAATTTATTTAAATTT
**
7871484 AAATTAATTTATTTAAATTT
1 ATTTTAATTTATTTAAATTT
7871504 ATTTTAAATTTA
1 ATTTT-AATTTA
7871516 AATTAAATTA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
19 7 0.29
20 11 0.46
21 6 0.25
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
ATTTTAATTTATTTAAATTT
Found at i:7871533 original size:11 final size:11
Alignment explanation
Indices: 7871476--7871529 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 11
7871466 TTTTGATTTT
*
7871476 TTAAGTTTAAA
1 TTAAATTTAAA
*
7871487 TT-AATTT-AT
1 TTAAATTTAAA
**
7871496 TTAAATTTATT
1 TTAAATTTAAA
7871507 TTAAATTTAAA
1 TTAAATTTAAA
7871518 TTAAA-TTAAA
1 TTAAATTTAAA
7871528 TT
1 TT
7871530 TAAAATGATA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 3 0.08
10 16 0.44
11 17 0.47
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:7872286 original size:27 final size:27
Alignment explanation
Indices: 7872248--7872300 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
7872238 ATAACAATTA
*
7872248 TAATAAATATTAAT-ATTAAATAATAT
1 TAATAAATATTAATAATAAAATAATAT
*
7872274 TAATAAAATATTAGTAATAAAATAATA
1 TAAT-AAATATTAATAATAAAATAATA
7872301 AACAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 9 0.39
28 10 0.43
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
TAATAAATATTAATAATAAAATAATAT
Found at i:7872914 original size:10 final size:10
Alignment explanation
Indices: 7872899--7872928 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
7872889 TAATGAAATG
7872899 AAAAAAATAA
1 AAAAAAATAA
7872909 AAAAAAACTAA
1 AAAAAAA-TAA
7872920 AAAAAAATA
1 AAAAAAATA
7872929 TATAGTAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:7873402 original size:29 final size:28
Alignment explanation
Indices: 7873365--7873455 Score: 80
Period size: 29 Copynumber: 3.2 Consensus size: 28
7873355 AAAAAATACT
7873365 ATTTTACCCCTAAACTTTTTAAAATTCC
1 ATTTTACCCCTAAACTTTTTAAAATTCC
* *
7873393 ATTTTAACCCC--GA-TTTTACCAAAAATTACC
1 ATTTT-ACCCCTAAACTTTT---TAAAATT-CC
* *
7873423 ATTATACCCCTAAACTTTCTAAAATTCC
1 ATTTTACCCCTAAACTTTTTAAAATTCC
7873451 ATTTT
1 ATTTT
7873456 TAACCTCGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 16
0.68 0.10 0.23
Matches are distributed among these distances:
26 4 0.08
27 1 0.02
28 11 0.23
29 22 0.46
30 6 0.12
31 1 0.02
32 3 0.06
ACGTcount: A:0.34, C:0.25, G:0.01, T:0.40
Consensus pattern (28 bp):
ATTTTACCCCTAAACTTTTTAAAATTCC
Found at i:7873431 original size:58 final size:59
Alignment explanation
Indices: 7873353--7873722 Score: 435
Period size: 59 Copynumber: 6.3 Consensus size: 59
7873343 CCCAAACAGT
* * * *
7873353 CCAAAAAATACTATTTTACCCCTAAACTTTTTAAAATTCCA-TTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* * *
7873411 CCAAAAATTACCATTATACCCCTAAACTTTCTAAAATTCCATTTTTAACCTCGGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* ** * * *
7873470 CAAAAAATTACCATTTTACCCCCGAACTCTCTAAAATTCCTTTTTTAA-CCCTAGTTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCCCGA-TTTCA
* * *
7873529 CCAAAAATTACCATTTTA-CCGTCGAACCTTCTAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* * * ** *
7873588 CCAAAAAAATACCATTTTACCCTTAAACTTTCTAAGATTCCATTTTTAACCTTGATTTTA
1 CC-AAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
** * *
7873648 CC-AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTT-AACCCCGATTTCA
7873707 CC-AAAATTACCATTTT
1 CCAAAAATTACCATTTT
7873723 TGCCCTCGGG
Statistics
Matches: 266, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
58 78 0.29
59 134 0.50
60 51 0.19
61 3 0.01
ACGTcount: A:0.34, C:0.27, G:0.03, T:0.36
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
Found at i:7873661 original size:177 final size:176
Alignment explanation
Indices: 7873384--7873722 Score: 511
Period size: 177 Copynumber: 1.9 Consensus size: 176
7873374 CTAAACTTTT
* *
7873384 TAAAATTCCATTTTAACCCCGATTTTACCAAAAATTACCATTATACCCCTAAACTTTCTAAAATT
1 TAAAATTCCATTTTAACCCCGATTTCACCAAAAAATACCATTATACCCCTAAACTTTCTAAAATT
* * *
7873449 CCATTTTTAACCTCGGTTTCACAAAAAATTACCATTTTACCCCCGAACTCTCTAAAATTCCTTTT
66 CCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCATTT
*
7873514 TTAACCCTAG-TTTCACCAAAAATTACCATTTTACCGTCGAACCTTC
131 TTAAACCTAGATTTCACC-AAAATTACCATTTTACCGTCGAACCTTC
* * *
7873560 TAAAATTCCATTTTTAACCCCGATTTCACCAAAAAAATACCATTTTACCCTTAAACTTTCTAAGA
1 TAAAATTCCA-TTTTAACCCCGATTTCACC-AAAAAATACCATTATACCCCTAAACTTTCTAAAA
* * * *
7873625 TTCCATTTTTAACCTTGATTTTAC-CAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCAT
64 TTCCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCAT
*
7873689 TTTTAAACCTCGATTTCACCAAAATTACCATTTT
129 TTTTAAACCTAGATTTCACCAAAATTACCATTTT
7873723 TGCCCTCGGG
Statistics
Matches: 146, Mismatches: 14, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
176 10 0.07
177 78 0.53
178 58 0.40
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (176 bp):
TAAAATTCCATTTTAACCCCGATTTCACCAAAAAATACCATTATACCCCTAAACTTTCTAAAATT
CCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCATTT
TTAAACCTAGATTTCACCAAAATTACCATTTTACCGTCGAACCTTC
Found at i:7873663 original size:30 final size:30
Alignment explanation
Indices: 7873385--7873723 Score: 113
Period size: 29 Copynumber: 11.5 Consensus size: 30
7873375 TAAACTTTTT
*
7873385 AAAATT-CCA-TTTTAACCCCGATTTTACC
1 AAAATTACCATTTTTAACCTCGATTTTACC
* * ** * *
7873413 AAAAATTACCA-TTATACCCCTAAACTTT-CT
1 -AAAATTACCATTTTTA-ACCTCGATTTTACC
* * *
7873443 AAAATT-CCATTTTTAACCTCGGTTTCACAA
1 AAAATTACCATTTTTAACCTCGATTTTAC-C
* * * * *
7873473 AAAATTACCA-TTTTACCCCCGAACTCT-CT
1 AAAATTACCATTTTTAACCTCG-ATTTTACC
* * *
7873502 AAAATT-CCTTTTTTAACC-CTAGTTTCACC
1 AAAATTACCATTTTTAACCTCGA-TTTTACC
** *
7873531 AAAAATTACCA-TTTT-ACCGTCGAACCTT-CT
1 -AAAATTACCATTTTTAACC-TCG-ATTTTACC
* *
7873561 AAAATT-CCATTTTTAACCCCGATTTCACC
1 AAAATTACCATTTTTAACCTCGATTTTACC
* * ** * *
7873590 AAAAAAATACCA-TTTTACCCTTAAACTTT-CT
1 --AAAATTACCATTTTTAACC-TCGATTTTACC
* *
7873621 AAGATT-CCATTTTTAACCTTGATTTTACC
1 AAAATTACCATTTTTAACCTCGATTTTACC
* * *
7873650 AAAATTACCA-TTTTACCCCCGAACTTT-CC
1 AAAATTACCATTTTTAACCTCG-ATTTTACC
*
7873679 AAAATT-CCATTTTTAAACCTCGATTTCACC
1 AAAATTACCATTTTT-AACCTCGATTTTACC
7873709 AAAATTACCATTTTT
1 AAAATTACCATTTTT
7873724 GCCCTCGGGT
Statistics
Matches: 216, Mismatches: 64, Indels: 58
0.64 0.19 0.17
Matches are distributed among these distances:
27 1 0.00
28 28 0.13
29 87 0.40
30 58 0.27
31 35 0.16
32 7 0.03
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (30 bp):
AAAATTACCATTTTTAACCTCGATTTTACC
Found at i:7873750 original size:118 final size:116
Alignment explanation
Indices: 7873384--7873765 Score: 401
Period size: 118 Copynumber: 3.2 Consensus size: 116
7873374 CTAAACTTTT
* **
7873384 TAAAATTCCA-TTTTAACCCCGATTTTACCAAAAATTACCATTATACCCCTAAACTTTCTAAAAT
1 TAAAATTCCATTTTTAACCCCGATTTTACCAAAAATTACCATTTTACCCCCGAACTTTCTAAAAT
* * * *
7873448 TCCATTTTTAACCTCGGTTTCACAAAAAATTACCATTTTACCCCCGAACTCTC
66 TCCATTTTTAACCTCGATTTCAC-CAAAATTACCATTTTACCCTCG-ACTATC
* * * ** *
7873501 TAAAATTCCTTTTTTAA-CCCTAGTTTCACCAAAAATTACCATTTTACCGTCGAACCTTCTAAAA
1 TAAAATTCCATTTTTAACCCCGA-TTTTACCAAAAATTACCATTTTACCCCCGAACTTTCTAAAA
* * ** *
7873565 TTCCATTTTTAACCCCGATTTCACCAAAAAAATACCATTTTACCCTTAAACTTTC
65 TTCCATTTTTAACCTCGATTTCACC--AAAATTACCATTTTACCC-TCGACTATC
* ** *
7873620 TAAGATTCCATTTTTAACCTTGATTTTACC-AAAATTACCATTTTACCCCCGAACTTTCCAAAAT
1 TAAAATTCCATTTTTAACCCCGATTTTACCAAAAATTACCATTTTACCCCCGAACTTTCTAAAAT
* **
7873684 TCCATTTTTAAACCTCGATTTCACCAAAATTACCATTTTTGCCCTCGGGTATC
66 TCCATTTTT-AACCTCGATTTCACCAAAATTACCA-TTTTACCCTCGACTATC
* * * *
7873737 CAAAAGTCTCATTTTTAATCTCGATTTTA
1 TAAAATTC-CATTTTTAACCCCGATTTTA
7873766 TCGTTTCTTC
Statistics
Matches: 216, Mismatches: 40, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
117 31 0.14
118 126 0.58
119 57 0.26
120 2 0.01
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.37
Consensus pattern (116 bp):
TAAAATTCCATTTTTAACCCCGATTTTACCAAAAATTACCATTTTACCCCCGAACTTTCTAAAAT
TCCATTTTTAACCTCGATTTCACCAAAATTACCATTTTACCCTCGACTATC
Found at i:7873752 original size:178 final size:176
Alignment explanation
Indices: 7873385--7873763 Score: 469
Period size: 178 Copynumber: 2.1 Consensus size: 176
7873375 TAAACTTTTT
* * *
7873385 AAAATTCCA-TTTTAACCCCGATTTTACCAAAAATTACCATTATACCCCTAAACTTTCTAAAATT
1 AAAAGTCCATTTTTAACCCCGATTTCACCAAAAAATACCATTATACCCCTAAACTTTCTAAAATT
* * *
7873449 CCATTTTTAACCTCGGTTTCACAAAAAATTACCATTTTACCCCCGAACTCTCTAAAATTCCTTTT
66 CCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCATTT
* * *
7873514 TTAACCCTAGTTTCACCAAAAATTACCATTTTACCGTCGAACCTTCT
131 TTAAACCTAGTTTCACCAAAAATTACCATTTTACCCTCG-ACCTTCC
* * * *
7873561 AAAATTCCATTTTTAACCCCGATTTCACCAAAAAAATACCATTTTACCCTTAAACTTTCTAAGAT
1 AAAAGTCCATTTTTAACCCCGATTTCACC-AAAAAATACCATTATACCCCTAAACTTTCTAAAAT
* * * *
7873626 TCCATTTTTAACCTTGATTTTAC-CAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATT
65 TCCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCATT
* * **
7873690 TTTAAACCTCGATTTCACC-AAAATTACCATTTTTGCCCTCG-GGTATCC
130 TTTAAACCTAG-TTTCACCAAAAATTACCA-TTTTACCCTCGACCT-TCC
* *
7873738 AAAAGTCTCATTTTTAATCTCGATTT
1 AAAAGTC-CATTTTTAACCCCGATTT
7873764 TATCGTTTCT
Statistics
Matches: 175, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
176 10 0.06
177 82 0.47
178 83 0.47
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (176 bp):
AAAAGTCCATTTTTAACCCCGATTTCACCAAAAAATACCATTATACCCCTAAACTTTCTAAAATT
CCATTTTTAACCTCGATTTCACAAAAAATTACCATTTTACCCCCGAACTCTCCAAAATTCCATTT
TTAAACCTAGTTTCACCAAAAATTACCATTTTACCCTCGACCTTCC
Found at i:7873760 original size:59 final size:58
Alignment explanation
Indices: 7873385--7873763 Score: 298
Period size: 59 Copynumber: 6.4 Consensus size: 58
7873375 TAAACTTTTT
* * * * ** * *
7873385 AAAATTCCA-TTTTAACCCCGATTTTACCAAAAATTACCATTATACCCCTAAACTTTCT
1 AAAAGTCCATTTTTAACCTCGATTTCACC-AAAATTACCATTTTACCCCCGAACTATCC
* * * * *
7873443 AAAATTCCATTTTTAACCTCGGTTTCACAAAAAATTACCATTTTACCCCCGAACTCTCT
1 AAAAGTCCATTTTTAACCTCGATTTCAC-CAAAATTACCATTTTACCCCCGAACTATCC
* * * ** *
7873502 AAAATTCCTTTTTTAACC-CTAGTTTCACCAAAAATTACCATTTTACCGTCGAACCT-TCT
1 AAAAGTCCATTTTTAACCTCGA-TTTCACC-AAAATTACCATTTTACCCCCGAA-CTATCC
* * * *** * *
7873561 AAAATTCCATTTTTAACCCCGATTTCACCAAAAAAATACCATTTTACCCTTAAACTTTCT
1 AAAAGTCCATTTTTAACCTCGATTTCACC--AAAATTACCATTTTACCCCCGAACTATCC
* * * * *
7873621 AAGATTCCATTTTTAACCTTGATTTTACCAAAATTACCATTTTACCCCCGAACTTTCC
1 AAAAGTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTTACCCCCGAACTATCC
* * * **
7873679 AAAATTCCATTTTTAAACCTCGATTTCACCAAAATTACCATTTTTGCCCTCG-GGTATCC
1 AAAAGTCCATTTTT-AACCTCGATTTCACCAAAATTACCA-TTTTACCCCCGAACTATCC
*
7873738 AAAAGTCTCATTTTTAATCTCGATTT
1 AAAAGTC-CATTTTTAACCTCGATTT
7873764 TATCGTTTCT
Statistics
Matches: 271, Mismatches: 39, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
58 47 0.17
59 156 0.58
60 68 0.25
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (58 bp):
AAAAGTCCATTTTTAACCTCGATTTCACCAAAATTACCATTTTACCCCCGAACTATCC
Found at i:7885098 original size:117 final size:117
Alignment explanation
Indices: 7884885--7885259 Score: 558
Period size: 117 Copynumber: 3.2 Consensus size: 117
7884875 CCCAAACAAT
* *
7884885 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCACCAAAA
1 CCAAAAATTACCATTTTACCCCCGAACCTTCTAAAATTCCATTTTTAACCCCGATTTTACCAAAA
*
7884950 ATTACCATTTTACCCCCGAACTTTCTGAAATTCCATTTTTAACCCCTGTTTCA
66 ATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCC-GTTTCA
* * *
7885003 CCAAAAATTACCATTATACCCCCAAACCTTCTAAAATTCCA-TTTTAACCCCAATTTTACCAAAA
1 CCAAAAATTACCATTTTACCCCCGAACCTTCTAAAATTCCATTTTTAACCCCGATTTTACCAAAA
* *
7885067 ATTACCATTTTACCCCCGAACTCTCTAAAATTCCATTTTTAACCTCAGTTTCA
66 ATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACC-CCGTTTCA
* * * *
7885120 CCAAAAATTACCATTTTACCCTCGAACCTTTTAAAATTCCATTTTTAACCTCGATTTTAAC-AAA
1 CCAAAAATTACCATTTTACCCCCGAACCTTCTAAAATTCCATTTTTAACCCCGATTTTACCAAAA
* * *
7885184 ATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTCA
66 ATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCG-TTTCA
*
7885237 CC-AAAATTACCATTTTGCCCCCG
1 CCAAAAATTACCATTTTACCCCCG
7885260 GGTATCCAAA
Statistics
Matches: 232, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
116 21 0.09
117 156 0.67
118 55 0.24
ACGTcount: A:0.33, C:0.30, G:0.03, T:0.34
Consensus pattern (117 bp):
CCAAAAATTACCATTTTACCCCCGAACCTTCTAAAATTCCATTTTTAACCCCGATTTTACCAAAA
ATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGTTTCA
Found at i:7885278 original size:58 final size:59
Alignment explanation
Indices: 7884885--7885294 Score: 537
Period size: 59 Copynumber: 7.0 Consensus size: 59
7884875 CCCAAACAAT
7884885 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
*
7884944 CCAAAAATTACCATTTTACCCCCGAACTTTCTGAAATTCCATTTTTAACCCCTG-TTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCC-GATTTCA
* * * * *
7885003 CCAAAAATTACCATTATACCCCCAAACCTTCTAAAATTCCA-TTTTAACCCCAATTTTA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* *
7885061 CCAAAAATTACCATTTTACCCCCGAACTCTCTAAAATTCCATTTTTAACCTC-AGTTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGA-TTTCA
* * *
7885120 CCAAAAATTACCATTTTACCCTCGAACCTTT-TAAAATTCCATTTTTAACCTCGATTTTA
1 CCAAAAATTACCATTTTACCCCCGAA-CTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* * * *
7885179 AC-AAAATTACCATTTTACCCCCAAACTTTCCAAAATTCCATTTTAAACCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
* ** * * * *
7885237 CC-AAAATTACCATTTTGCCCCCG-GGTATCCAAAAGTCCCATTTTTAATCCCGATTTCA
1 CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAA-TTCCATTTTTAACCCCGATTTCA
7885295 TCGTTTCTTC
Statistics
Matches: 311, Mismatches: 32, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
57 12 0.04
58 137 0.44
59 157 0.50
60 5 0.02
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTTAACCCCGATTTCA
Found at i:7891460 original size:76 final size:76
Alignment explanation
Indices: 7891334--7891487 Score: 308
Period size: 76 Copynumber: 2.0 Consensus size: 76
7891324 CGGCACAAAC
7891334 CATTCGGACTGCCACGTATAAACATAAATAACATCTCCATTTTCCAACCCCAAATCATCGATTGT
1 CATTCGGACTGCCACGTATAAACATAAATAACATCTCCATTTTCCAACCCCAAATCATCGATTGT
7891399 TTCCCTCATAT
66 TTCCCTCATAT
7891410 CATTCGGACTGCCACGTATAAACATAAATAACATCTCCATTTTCCAACCCCAAATCATCGATTGT
1 CATTCGGACTGCCACGTATAAACATAAATAACATCTCCATTTTCCAACCCCAAATCATCGATTGT
7891475 TTCCCTCATAT
66 TTCCCTCATAT
7891486 CA
1 CA
7891488 ATGCTGCAAC
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.32, C:0.31, G:0.08, T:0.30
Consensus pattern (76 bp):
CATTCGGACTGCCACGTATAAACATAAATAACATCTCCATTTTCCAACCCCAAATCATCGATTGT
TTCCCTCATAT
Found at i:7892013 original size:274 final size:275
Alignment explanation
Indices: 7891522--7892308 Score: 1196
Period size: 275 Copynumber: 2.9 Consensus size: 275
7891512 CTGAACTTGG
* * *
7891522 CATGCTCGTATAACTCATTGATGTGGTCAGCATAAACATGCAACAGGTTTTTCATCGGTGTGTTT
1 CATGCTCGTATAACTCATTGATTTGGTCAGCATAATCATGCAACAGGTTTTTCATCGATGTGTTT
* *
7891587 TACCCAATCAAATAGTACAGCGGGCTATCCTTTGTAAAAAGCCTTCTCCACTTTCAGAACAACTG
66 CACCCAATCAAATAGTACAGCAGGCTATCCTTTGT-AAAAGCCTTCTCCACTTTCAGAACAACTG
* *
7891652 GTATTTCCCCATTGACAACCAGA-GTCAAAGTAATAAGAGTTGATTAAGTTCCGGCTGTAGGTTT
130 GTATTTCCCCATCGACAACCAGATG-CAAAGTAATAAGAGTTGATTGAGTTCCGGCTGTAGGTTT
* * * *
7891716 AAAGTTTCCCCTTCTCGATACATCAATGGTATTTCCATCTTTCATATTCAATGTGGCAACAACTG
194 AAAGTTTCTCCTTCTCAATACATCAATGGTATCTCCATCTTTCATATTCAATGTGACAACAACTG
*
7891781 -TCGCAACCGAACATGA
259 TTCGCAACCAAACATGA
7891797 CATGCTCGTATAACTCATTGATTTGGTCAGCATAATCATGCAACAGGTTTTTCATCGATGTGTTT
1 CATGCTCGTATAACTCATTGATTTGGTCAGCATAATCATGCAACAGGTTTTTCATCGATGTGTTT
* * * *
7891862 CGCCCAATCAAATAGTACAGCAGGCTATCCTTTGTAAAAGCCTTCTCCACTTTTAGGATAACTGG
66 CACCCAATCAAATAGTACAGCAGGCTATCCTTTGTAAAAGCCTTCTCCACTTTCAGAACAACTGG
*
7891927 TATTTCCCCATCGACAACCAGATGCAAAGTAATAAGAGTTGATTGAGTTCCGGATGTAGGTTTAA
131 TATTTCCCCATCGACAACCAGATGCAAAGTAATAAGAGTTGATTGAGTTCCGGCTGTAGGTTTAA
7891992 AGTTTCTCCTTCTCAATACATCAATGGTATCTCCATCTTTCATATTCAATGTGACAACAACTGTT
196 AGTTTCTCCTTCTCAATACATCAATGGTATCTCCATCTTTCATATTCAATGTGACAACAACTGTT
*
7892057 TGCAACCAAACATGA
261 CGCAACCAAACATGA
*
7892072 CATGCTCGTATAACTCATTGATTCGGTCAGCATAATCATGCAACAGGTTTTTCATC-AGTGTGTT
1 CATGCTCGTATAACTCATTGATTTGGTCAGCATAATCATGCAACAGGTTTTTCATCGA-TGTGTT
* *
7892136 TCACCCAGTCAAATAGTACAGCTGGCTATCCTTTGTAAAAGCCTTCTCCACTTTCAGAACAACTG
65 TCACCCAATCAAATAGTACAGCAGGCTATCCTTTGTAAAAGCCTTCTCCACTTTCAGAACAACTG
* * ** * *
7892201 GTGTTTCCCCATCG---ACC-GTTGGCAAAGTAATAAGAGTCT-ATTGAGTAGCAGCTGTAGGTC
130 GTATTTCCCCATCGACAACCAGAT-GCAAAGTAATAAGAGT-TGATTGAGTTCCGGCTGTAGGTT
* * *
7892261 TAAAGTTTCTCCTTCCCAATACATC-GTGGTGTCTCCATCTTTCATATT
193 TAAAGTTTCTCCTTCTCAATACATCAATGGTATCTCCATCTTTCATATT
7892309 GAGACCTTTA
Statistics
Matches: 472, Mismatches: 35, Indels: 14
0.91 0.07 0.03
Matches are distributed among these distances:
271 23 0.05
272 59 0.12
273 1 0.00
274 147 0.31
275 242 0.51
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (275 bp):
CATGCTCGTATAACTCATTGATTTGGTCAGCATAATCATGCAACAGGTTTTTCATCGATGTGTTT
CACCCAATCAAATAGTACAGCAGGCTATCCTTTGTAAAAGCCTTCTCCACTTTCAGAACAACTGG
TATTTCCCCATCGACAACCAGATGCAAAGTAATAAGAGTTGATTGAGTTCCGGCTGTAGGTTTAA
AGTTTCTCCTTCTCAATACATCAATGGTATCTCCATCTTTCATATTCAATGTGACAACAACTGTT
CGCAACCAAACATGA
Found at i:7897067 original size:96 final size:95
Alignment explanation
Indices: 7896804--7897318 Score: 757
Period size: 96 Copynumber: 5.5 Consensus size: 95
7896794 AACGGAATGG
*
7896804 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAACAGA
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
*
7896869 AAAGAAAAGAAAATTTTGAAATGCTAAGACA
66 AAAGAAAAGAAAATTTTGAAAT-TTAAGACA
* * * *
7896900 TATTAGGCAGTACTTGAATTGG--T----AGCACTTGTAAGTAACATAAATTAGGCATGAAAAGA
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
*
7896959 AAAGAAAAGAAAATTTTGAGATTATAAGACA
66 AAAGAAAAGAAAATTTTGAAATT-TAAGACA
7896990 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
7897055 AAAGAAAAGAAAATTTTGAAATGTTAAGACA
66 AAAGAAAAGAAAATTTTGAAAT-TTAAGACA
* *
7897086 TGTGAGGCAGTACCTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
*
7897151 AAGGAAAAGAAAATTTTGAAATGTTAAGACA
66 AAAGAAAAGAAAATTTTGAAAT-TTAAGACA
* * **
7897182 TGTTAGGCAGTACGTGAATTGG--T----AGCACTTGTAAGTAACATAAATTAGACAAGAAAAGA
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
7897241 AAAGAAAAGAAAATTTTGAAATTCTAAGACA
66 AAAGAAAAGAAAATTTTGAAATT-TAAGACA
* *
7897272 TGTTAGGCAGTACTTGAATTGGTATGAAAAGTACTTGTAAGTAACAT
1 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACAT
7897319 GAAAAGAAAA
Statistics
Matches: 381, Mismatches: 23, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
89 1 0.00
90 163 0.43
92 2 0.01
94 2 0.01
96 212 0.56
97 1 0.00
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.27
Consensus pattern (95 bp):
TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
AAAGAAAAGAAAATTTTGAAATTTAAGACA
Found at i:7897211 original size:186 final size:188
Alignment explanation
Indices: 7896804--7897318 Score: 726
Period size: 186 Copynumber: 2.7 Consensus size: 188
7896794 AACGGAATGG
* *
7896804 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAACAGA
1 TGTTAGGCAGTACGTGAATTGG-AT---AAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
* *
7896869 AAAGAAAAGAAAATTTTGAAATGCTAAGACATATTAGGCAGTACTTGAATTGG--T----AGCAC
62 AAAGAAAAGAAAATTTTGAAATGTTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCAC
* *
7896928 TTGTAAGTAACATAAATTAGGCATGAAAAGAAAAGAAAAGAAAATTTTGAGATTATAAGACA
127 TTGTAAGTAACATAAATTAGACATGAAAAGAAAAGAAAAGAAAATTTTGAAATTATAAGACA
*
7896990 TGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
1 TGTTAGGCAGTACGTGAATTGG-AT---AAGCACTTCTAAGTAACATAAATTAGACATTAAAAGA
* *
7897055 AAAGAAAAGAAAATTTTGAAATGTTAAGACATGTGAGGCAGTACCTGAATTGGTATGAAAAGCAC
62 AAAGAAAAGAAAATTTTGAAATGTTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCAC
* * *
7897120 TTCTAAGTAACATAAATTAGACATTAAAAGAAAGGAAAAGAAAATTTTGAAATGT-TAAGACA
127 TTGTAAGTAACATAAATTAGACATGAAAAGAAAAGAAAAGAAAATTTTGAAAT-TATAAGACA
* **
7897182 TGTTAGGCAGTACGTGAATTGG-T-AGCACTTGTAAGTAACATAAATTAGACAAGAAAAGAAAAG
1 TGTTAGGCAGTACGTGAATTGGATAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAG
*
7897245 AAAAGAAAATTTTGAAAT-TCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGTACTTG
66 AAAAGAAAATTTTGAAATGT-TAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTG
7897309 TAAGTAACAT
130 TAAGTAACAT
7897319 GAAAAGAAAA
Statistics
Matches: 303, Mismatches: 18, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
185 1 0.00
186 218 0.72
188 1 0.00
190 1 0.00
192 81 0.27
193 1 0.00
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.27
Consensus pattern (188 bp):
TGTTAGGCAGTACGTGAATTGGATAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAG
AAAAGAAAATTTTGAAATGTTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCACTTGT
AAGTAACATAAATTAGACATGAAAAGAAAAGAAAAGAAAATTTTGAAATTATAAGACA
Found at i:7897315 original size:282 final size:282
Alignment explanation
Indices: 7896808--7897318 Score: 914
Period size: 282 Copynumber: 1.8 Consensus size: 282
7896798 GAATGGTGTT
* *
7896808 AGGCAGTACTTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAACAGAAAAG
1 AGGCAGTACCTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAG
*
7896873 AAAAGAAAATTTTGAAATGCTAAGACATATTAGGCAGTACTTGAATTGGTAGCACTTGTAAGTAA
66 AAAAGAAAATTTTGAAATGCTAAGACATATTAGGCAGTACGTGAATTGGTAGCACTTGTAAGTAA
* * *
7896938 CATAAATTAGGCATGAAAAGAAAAGAAAAGAAAATTTTGAGATTATAAGACATGTTAGGCAGTAC
131 CATAAATTAGACAAGAAAAGAAAAGAAAAGAAAATTTTGAAATTATAAGACATGTTAGGCAGTAC
7897003 TTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAA
196 TTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAA
7897068 TTTTGAAATGTTAAGACATGTG
261 TTTTGAAATGTTAAGACATGTG
*
7897090 AGGCAGTACCTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAGG
1 AGGCAGTACCTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAG
* *
7897155 AAAAGAAAATTTTGAAATGTTAAGACATGTTAGGCAGTACGTGAATTGGTAGCACTTGTAAGTAA
66 AAAAGAAAATTTTGAAATGCTAAGACATATTAGGCAGTACGTGAATTGGTAGCACTTGTAAGTAA
*
7897220 CATAAATTAGACAAGAAAAGAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTAC
131 CATAAATTAGACAAGAAAAGAAAAGAAAAGAAAATTTTGAAATTATAAGACATGTTAGGCAGTAC
* *
7897285 TTGAATTGGTATGAAAAGTACTTGTAAGTAACAT
196 TTGAATTGGTATGAAAAGCACTTCTAAGTAACAT
7897319 GAAAAGAAAA
Statistics
Matches: 217, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
282 217 1.00
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.26
Consensus pattern (282 bp):
AGGCAGTACCTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAG
AAAAGAAAATTTTGAAATGCTAAGACATATTAGGCAGTACGTGAATTGGTAGCACTTGTAAGTAA
CATAAATTAGACAAGAAAAGAAAAGAAAAGAAAATTTTGAAATTATAAGACATGTTAGGCAGTAC
TTGAATTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAA
TTTTGAAATGTTAAGACATGTG
Found at i:7898104 original size:106 final size:106
Alignment explanation
Indices: 7897986--7898513 Score: 836
Period size: 106 Copynumber: 5.0 Consensus size: 106
7897976 AATTAGACAT
*
7897986 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAATC
1 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
* * *
7898051 ACTTGTAAGTAACA-AAAGTTAGACATTAACAGAAATGAAAA
66 ACTTCTAAGTAACATAAA-TTAGACATTAAAAGAAAAGAAAA
* * * *
7898092 GAAAAGAAAAGAAAATTTTTAAATGCTAAGACATGTTAGGAAGTACTTGAATTGG--TG----CC
1 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
* * *
7898151 ACTTTTAAGTAACATAAATTAGACATGATAAGAAAAGAAAA
66 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
*
7898192 AAAAACGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAG
1 GAAAA-GAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAG
7898257 CACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
65 CACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
*
7898299 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGATTTGGTATGAAAAGC
1 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
7898364 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
66 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
*
7898405 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACGTGAATTGGTATGAAAAGC
1 GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
* * *
7898470 ACTTCTAAGTAACATAAATTAGACATGAAAAGAAGAGAAGA
66 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
7898511 GAA
1 GAA
7898514 GCTTTTCAAA
Statistics
Matches: 390, Mismatches: 24, Indels: 16
0.91 0.06 0.04
Matches are distributed among these distances:
100 37 0.09
101 50 0.13
103 2 0.01
104 2 0.01
106 256 0.66
107 43 0.11
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.25
Consensus pattern (106 bp):
GAAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAA
Found at i:7898295 original size:5 final size:5
Alignment explanation
Indices: 7898285--7898313 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7898275 ATTAGACATT
7898285 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
7898314 TTTTGAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7898346 original size:207 final size:208
Alignment explanation
Indices: 7897987--7898513 Score: 826
Period size: 207 Copynumber: 2.5 Consensus size: 208
7897977 ATTAGACATG
*
7897987 AAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAATCA
1 AAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCA
* * * *
7898052 CTTGTAAGTAACA-AAAGTTAGACATTAACAGAAATGAAAAGAAAAGAAAAGAAAATTTTTAAAT
66 CTTCTAAGTAACATAAA-TTAGACATTAAAAGAAAAGAAAAGAAAAGAAAAGAAAATTTTGAAAT
*
7898116 GCTAAGACATGTTAGGAAGTACTTGAATTGG-TG-CCACTTTTAAGTAACATAAATTAGACATGA
130 GCTAAGACATGTTAGGAAGTACTTGAATTGGATGACCACTTCTAAGTAACATAAATTAGACATGA
*
7898179 TAAGAAAAGAAAAA
195 AAAGAAAAGAAAAA
7898193 AAAACGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
1 AAAA-GAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGC
7898258 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAAGAAAAGAAAATTTTGAAAT
65 ACTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAAGAAAAGAAAATTTTGAAAT
* * * *
7898323 TCTAAGACATGTTAGGCAGTACTTGATTTGGTATGAAAAGCACTTCTAAGTAACATAAATTAGAC
130 GCTAAGACATGTTAGGAAGTACTTGAATTGG-ATG---ACCACTTCTAAGTAACATAAATTAGAC
* *
7898388 ATTAAAAGAAAAGAAAAG
191 ATGAAAAGAAAAGAAAAA
*
7898406 AAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACGTGAATTGGTATGAAAAGCA
1 AAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCA
* * *
7898471 CTTCTAAGTAACATAAATTAGACATGAAAAGAAGAGAAGAGAA
66 CTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAA
7898514 GCTTTTCAAA
Statistics
Matches: 296, Mismatches: 17, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
206 4 0.01
207 144 0.49
208 3 0.01
209 2 0.01
212 100 0.34
213 43 0.15
ACGTcount: A:0.49, C:0.09, G:0.18, T:0.25
Consensus pattern (208 bp):
AAAAGAAAAGAAAATTTTGAAATTCTAAGACATGTTAGGCAGTACTTGAATTGGTATGAAAAGCA
CTTCTAAGTAACATAAATTAGACATTAAAAGAAAAGAAAAGAAAAGAAAAGAAAATTTTGAAATG
CTAAGACATGTTAGGAAGTACTTGAATTGGATGACCACTTCTAAGTAACATAAATTAGACATGAA
AAGAAAAGAAAAA
Found at i:7898401 original size:5 final size:5
Alignment explanation
Indices: 7898391--7898419 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7898381 ATTAGACATT
7898391 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
7898420 TTTTGAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:7901549 original size:68 final size:69
Alignment explanation
Indices: 7901421--7901550 Score: 217
Period size: 68 Copynumber: 1.9 Consensus size: 69
7901411 GAAGAAAAGC
* * *
7901421 TATATCAATTTTTCAATTATATTAATTAATAATTATAATTGTAATTGTTATTATCCCAACTTATT
1 TATATCAATTTTTCAATTATATTAATTAATAATTATAATTGTAATTATAATTATCACAACTTATT
7901486 TTTT
66 TTTT
*
7901490 TATATCAATTTTT-AATTATATTAATTAATAATTATAATTGTAATTATAATTATTACAACTT
1 TATATCAATTTTTCAATTATATTAATTAATAATTATAATTGTAATTATAATTATCACAACTT
7901551 TTATCTGCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
68 44 0.77
69 13 0.23
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (69 bp):
TATATCAATTTTTCAATTATATTAATTAATAATTATAATTGTAATTATAATTATCACAACTTATT
TTTT
Found at i:7902095 original size:7 final size:7
Alignment explanation
Indices: 7902083--7902142 Score: 120
Period size: 7 Copynumber: 8.6 Consensus size: 7
7902073 AAATGATGTC
7902083 TCCATCT
1 TCCATCT
7902090 TCCATCT
1 TCCATCT
7902097 TCCATCT
1 TCCATCT
7902104 TCCATCT
1 TCCATCT
7902111 TCCATCT
1 TCCATCT
7902118 TCCATCT
1 TCCATCT
7902125 TCCATCT
1 TCCATCT
7902132 TCCATCT
1 TCCATCT
7902139 TCCA
1 TCCA
7902143 ATCATCCGCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.15, C:0.43, G:0.00, T:0.42
Consensus pattern (7 bp):
TCCATCT
Found at i:7903224 original size:17 final size:17
Alignment explanation
Indices: 7903202--7903235 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7903192 GAAAAAATTT
*
7903202 ATTTAAATGTTATTTAA
1 ATTTAAATATTATTTAA
7903219 ATTTAAATATTATTTAA
1 ATTTAAATATTATTTAA
7903236 TTATTGTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTAAATATTATTTAA
Found at i:7903385 original size:27 final size:27
Alignment explanation
Indices: 7903355--7903436 Score: 82
Period size: 27 Copynumber: 3.1 Consensus size: 27
7903345 GAAAGATATA
7903355 ATATAATTTTTATTTGAAATATAAAAT
1 ATATAATTTTTATTTGAAATATAAAAT
* * *
7903382 ATATAATCATTTATTTG---T-TTAACT
1 ATATAAT-TTTTATTTGAAATATAAAAT
* *
7903406 AAATTATTTTTATTTGAAATATAAAAT
1 ATATAATTTTTATTTGAAATATAAAAT
7903433 ATAT
1 ATAT
7903437 TTTTTTAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
23 8 0.20
24 9 0.22
25 1 0.02
26 1 0.02
27 14 0.34
28 8 0.20
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (27 bp):
ATATAATTTTTATTTGAAATATAAAAT
Found at i:7904023 original size:30 final size:31
Alignment explanation
Indices: 7903962--7904024 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
7903952 CAATTGAATC
* *
7903962 TTTCAATTTTAAATTTTCAATTAATAATAAA
1 TTTCAATTTAAAATTTTCAATAAATAATAAA
7903993 TTTCAATTTAAAATTTT-AA-AAATAATTAAA
1 TTTCAATTTAAAATTTTCAATAAATAA-TAAA
7904023 TT
1 TT
7904025 AGTGTGTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.17
30 8 0.28
31 16 0.55
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (31 bp):
TTTCAATTTAAAATTTTCAATAAATAATAAA
Found at i:7904351 original size:40 final size:40
Alignment explanation
Indices: 7904296--7904375 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
7904286 ATGTAAGAGT
7904296 AAATTCAATACTTAAAATTTTAATTTATCAAAGTAATCAA
1 AAATTCAATACTTAAAATTTTAATTTATCAAAGTAATCAA
7904336 AAATTCAATACTTAAAATTTTAATTTATCAAAGTAATCAA
1 AAATTCAATACTTAAAATTTTAATTTATCAAAGTAATCAA
7904376 TATATAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.38
Consensus pattern (40 bp):
AAATTCAATACTTAAAATTTTAATTTATCAAAGTAATCAA
Found at i:7904462 original size:21 final size:21
Alignment explanation
Indices: 7904438--7904483 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
7904428 AAAATTGTAT
7904438 TAATTACTTCTGACAGATTGA
1 TAATTACTTCTGACAGATTGA
7904459 TAATTACTTCTGACAGATTGA
1 TAATTACTTCTGACAGATTGA
7904480 TAAT
1 TAAT
7904484 CTCAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (21 bp):
TAATTACTTCTGACAGATTGA
Found at i:7906076 original size:6 final size:6
Alignment explanation
Indices: 7906065--7906095 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7906055 TTTCAGCCGG
*
7906065 CTGAGC CTGAGC CTGAGC CTGAGC TTGAGC C
1 CTGAGC CTGAGC CTGAGC CTGAGC CTGAGC C
7906096 GCAACACTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (6 bp):
CTGAGC
Found at i:7906114 original size:30 final size:30
Alignment explanation
Indices: 7906080--7906145 Score: 114
Period size: 30 Copynumber: 2.2 Consensus size: 30
7906070 CCTGAGCCTG
7906080 AGCCTGAGCTTGAGCCGCAACACTATTCGA
1 AGCCTGAGCTTGAGCCGCAACACTATTCGA
* *
7906110 AGCCTGAGCTTGAGCCGCAGCACTATTCGG
1 AGCCTGAGCTTGAGCCGCAACACTATTCGA
7906140 AGCCTG
1 AGCCTG
7906146 CGCTCGAGTC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (30 bp):
AGCCTGAGCTTGAGCCGCAACACTATTCGA
Found at i:7906568 original size:6 final size:6
Alignment explanation
Indices: 7906557--7906597 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
7906547 TAGAATTAAA
*
7906557 TATGTT TATGTT TATGTT TATGTT CT-TATT TATGTT TATGT
1 TATGTT TATGTT TATGTT TATGTT -TATGTT TATGTT TATGT
7906598 ATGCAAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 1 0.03
6 29 0.94
7 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.15, T:0.66
Consensus pattern (6 bp):
TATGTT
Found at i:7906726 original size:26 final size:26
Alignment explanation
Indices: 7906671--7906746 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
7906661 GCTAAACCTC
**
7906671 ATTAAATAAATTCAAACATAAAAATT
1 ATTAAATAAATTCAAACATAAAAAGA
** *
7906697 ATTAAATAAATTCAAATTTAAATAGA
1 ATTAAATAAATTCAAACATAAAAAGA
* *
7906723 ATTAATTCCAAATTCAATCATAAA
1 ATTAAAT--AAATTCAAACATAAA
7906747 CTTAATTAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
26 27 0.69
28 12 0.31
ACGTcount: A:0.57, C:0.09, G:0.01, T:0.33
Consensus pattern (26 bp):
ATTAAATAAATTCAAACATAAAAAGA
Found at i:7909727 original size:14 final size:15
Alignment explanation
Indices: 7909698--7909731 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
7909688 CTTGTCAAAT
7909698 TTTAATTTTATTTAA
1 TTTAATTTTATTTAA
7909713 TTTAATTTT-TTTAA
1 TTTAATTTTATTTAA
7909727 TTTAA
1 TTTAA
7909732 AAATATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTAATTTTATTTAA
Found at i:7911073 original size:27 final size:27
Alignment explanation
Indices: 7910987--7911056 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
7910977 AAAATACGAG
7910987 TTGGTGCCACCTGACAGGAAGGCACCA
1 TTGGTGCCACCTGACAGGAAGGCACCA
7911014 TTGGTGCCACCTGACAGGAAGGCACCA
1 TTGGTGCCACCTGACAGGAAGGCACCA
*
7911041 TTGGTGCCGCCTGACA
1 TTGGTGCCACCTGACA
7911057 AGTAGACACC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (27 bp):
TTGGTGCCACCTGACAGGAAGGCACCA
Found at i:7911078 original size:27 final size:27
Alignment explanation
Indices: 7910987--7911080 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 27
7910977 AAAATACGAG
* * *
7910987 TTGGTGCCACCTGACAGGAAGGCACCA
1 TTGGTGCCGCCTGACAAGAAGACACCA
* * *
7911014 TTGGTGCCACCTGACAGGAAGGCACCA
1 TTGGTGCCGCCTGACAAGAAGACACCA
*
7911041 TTGGTGCCGCCTGACAAGTAGACACCA
1 TTGGTGCCGCCTGACAAGAAGACACCA
* *
7911068 CTGGTGTCGCCTG
1 TTGGTGCCGCCTG
7911081 TTAGGTAGGC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.22, C:0.30, G:0.30, T:0.18
Consensus pattern (27 bp):
TTGGTGCCGCCTGACAAGAAGACACCA
Found at i:7918772 original size:48 final size:48
Alignment explanation
Indices: 7918698--7918791 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
7918688 CCCAATCAAG
**
7918698 ATTTATTAAATTTGTTTATTAAGTATAGGAAAAGGTGTTCTAGGCAGA
1 ATTTATTAAATTTGTTTATTAAGTATAAAAAAAGGTGTTCTAGGCAGA
** *
7918746 ATTTATTTGATTTGTTTATTAGGTATAAAAAAAGGTGTTCTAGGCA
1 ATTTATTAAATTTGTTTATTAAGTATAAAAAAAGGTGTTCTAGGCA
7918792 TCGTCCATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.41
Consensus pattern (48 bp):
ATTTATTAAATTTGTTTATTAAGTATAAAAAAAGGTGTTCTAGGCAGA
Found at i:7921847 original size:3 final size:3
Alignment explanation
Indices: 7921839--7921870 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7921829 TGAGGCAATT
*
7921839 GAA GAA GAA GAA GAA GAA GAA GAA GGA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
7921871 GTGAGAGTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7922018 original size:22 final size:22
Alignment explanation
Indices: 7921993--7922036 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7921983 ACATTTGATT
7921993 AATAATATT-AATAATATAAATA
1 AATAATATTCAA-AATATAAATA
*
7922015 AATAATTTTCAAAATATAAATA
1 AATAATATTCAAAATATAAATA
7922037 TCATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AATAATATTCAAAATATAAATA
Found at i:7923040 original size:60 final size:60
Alignment explanation
Indices: 7922929--7923046 Score: 173
Period size: 60 Copynumber: 2.0 Consensus size: 60
7922919 TTTACAAAGA
* * ***
7922929 GAATAATTTACGTAAGGATGATCCTAAAAATCAAGGTTTTTAAGTGTCAATAAAATTTAG
1 GAATAATTTACATAAAGATGATCCTAAAAATCAAGGTTTTTAAGCAACAATAAAATTTAG
* *
7922989 GAATAATTTACATAAAGATGATCCTAAAAATTAAGGTTTTTAGGCAACAATAAAATTT
1 GAATAATTTACATAAAGATGATCCTAAAAATCAAGGTTTTTAAGCAACAATAAAATTT
7923047 TATCACATCA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (60 bp):
GAATAATTTACATAAAGATGATCCTAAAAATCAAGGTTTTTAAGCAACAATAAAATTTAG
Found at i:7923265 original size:21 final size:21
Alignment explanation
Indices: 7923241--7923289 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
7923231 CACCAAATCA
* * *
7923241 TAAACTTAAAATTTTGAACCC
1 TAAACCTAAAATATAGAACCC
7923262 TAAACCTAAAATATAGAACCC
1 TAAACCTAAAATATAGAACCC
*
7923283 AAAACCT
1 TAAACCT
7923290 CAACTCTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.24
Consensus pattern (21 bp):
TAAACCTAAAATATAGAACCC
Found at i:7923391 original size:20 final size:20
Alignment explanation
Indices: 7923366--7923410 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7923356 CCCAAATCCT
7923366 TAAACCTTAAAC-TCAAACCC
1 TAAACC-TAAACATCAAACCC
**
7923386 TAAACCTAAACATTGAACCC
1 TAAACCTAAACATCAAACCC
7923406 TAAAC
1 TAAAC
7923411 TCAAAATCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (20 bp):
TAAACCTAAACATCAAACCC
Found at i:7924065 original size:33 final size:32
Alignment explanation
Indices: 7924003--7924072 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
7923993 AGGTTTAGAC
*
7924003 TAAAAAAATATAAAAATTATATATCAATAATAT
1 TAAAAAAATATAAAAATTATATATAAATAAT-T
*
7924036 TAAAAAAATTATTAAAATGTA-AT-TAAATAATT
1 TAAAAAAA-TATAAAAAT-TATATATAAATAATT
7924068 TAAAA
1 TAAAA
7924073 TAGATAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
32 6 0.18
33 15 0.45
34 10 0.30
35 2 0.06
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (32 bp):
TAAAAAAATATAAAAATTATATATAAATAATT
Found at i:7930578 original size:29 final size:29
Alignment explanation
Indices: 7930546--7930603 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
7930536 CTATCTGTAA
7930546 TGATAGAAATCATTACTACATTCTAATAT
1 TGATAGAAATCATTACTACATTCTAATAT
7930575 TGATAGAAATCATTACTACATTCTAATAT
1 TGATAGAAATCATTACTACATTCTAATAT
7930604 CCTTCCTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (29 bp):
TGATAGAAATCATTACTACATTCTAATAT
Found at i:7932175 original size:24 final size:24
Alignment explanation
Indices: 7932148--7932205 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
7932138 CATGTCCTCT
*
7932148 GCGAACCTTGTTCGTCATAATGTG
1 GCGAACCTAGTTCGTCATAATGTG
*
7932172 GCGAACCTAGTTCGTCATAATGTT
1 GCGAACCTAGTTCGTCATAATGTG
7932196 GCGAACCTAG
1 GCGAACCTAG
7932206 CTCGCCACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
GCGAACCTAGTTCGTCATAATGTG
Found at i:7933065 original size:32 final size:33
Alignment explanation
Indices: 7933007--7933070 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
7932997 AATCTGGAAC
* *
7933007 AAAAATCAATTGAGATTTCGATTTGAAGAAATA
1 AAAAATCAATTGAGATTTCGAATTGAACAAATA
*
7933040 AAAAATCAATT-A-ATTCTCTAATTGAACAAAT
1 AAAAATCAATTGAGATT-TCGAATTGAACAAAT
7933071 TAGATTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 3 0.11
32 13 0.48
33 11 0.41
ACGTcount: A:0.50, C:0.09, G:0.09, T:0.31
Consensus pattern (33 bp):
AAAAATCAATTGAGATTTCGAATTGAACAAATA
Found at i:7935782 original size:39 final size:40
Alignment explanation
Indices: 7935684--7935792 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
7935674 TTTAGAAAGA
* * * *
7935684 AAACACCGTAAAAGGTAAAACAATAGCGGTGTTTTTCTAC
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCTAC
* *
7935724 AAACGCCGCGAAAA-ATAAAGCAATAGCGGCGTTTTTC-AT
1 AAACGCCGC-AAAAGGTAAAGCAATAGCGGCGTTTTTCTAC
*
7935763 AAACGCCGCAAAAGGTAAAGCAATAACGGC
1 AAACGCCGCAAAAGGTAAAGCAATAGCGGC
7935793 ATTTATAGAA
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
38 4 0.07
39 24 0.41
40 27 0.46
41 4 0.07
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.18
Consensus pattern (40 bp):
AAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTTTCTAC
Found at i:7936003 original size:82 final size:82
Alignment explanation
Indices: 7935742--7936020 Score: 273
Period size: 82 Copynumber: 3.4 Consensus size: 82
7935732 CGAAAAATAA
* *** * * *
7935742 AGCAATAGCGGCGTTTTTCATAAA-CGCCGC-AAAAGGT-AAAGCAATAACGGCATTTATA-GAA
1 AGCATTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAA-GTCAGAGCATTAGCGGCATTTATATG--
*
7935803 AAAACGCCGCTAAAGGTCAG
63 AAAGCGCCGCTAAAGGTCAG
* * * * * *
7935823 AGCATTAGCAGCATTTTCGAGG-AAGCGCCGCTAAAGGTCAGATCATTAGCGGCTATTT-TGTGA
1 AGCATTAGCGGCGTTTTTG-GGAAAGCGCCGCTAAAAGTCAGAGCATTAGCGGC-ATTTATATGA
* * *
7935886 AGGCACCGCTAAAGGTCAA
64 AAGCGCCGCTAAAGGTCAG
* *
7935905 AGCATTAGCGACGTTTTTGGGAAAGCGCCACTAAAAGTCAGAGCATTAGCGGCATTTATATGAAA
1 AGCATTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAGTCAGAGCATTAGCGGCATTTATATGAAA
7935970 GCGCCGCTAAAGGTCAG
66 GCGCCGCTAAAGGTCAG
* **
7935987 AGCATTAGCGGTGTTTTTGAAAAAGCGCCGCTAA
1 AGCATTAGCGGCGTTTTTGGGAAAGCGCCGCTAA
7936021 TTTATTTACA
Statistics
Matches: 157, Mismatches: 33, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
81 22 0.14
82 116 0.74
83 14 0.09
84 5 0.03
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (82 bp):
AGCATTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAGTCAGAGCATTAGCGGCATTTATATGAAA
GCGCCGCTAAAGGTCAG
Found at i:7936012 original size:41 final size:40
Alignment explanation
Indices: 7935742--7936020 Score: 233
Period size: 41 Copynumber: 6.8 Consensus size: 40
7935732 CGAAAAATAA
* * * * *
7935742 AGCAATAGCGGCGTTTTTCATAAA-CGCCGCAAAAGGT-AA
1 AGCATTAGCGGCATTTTTGA-AAAGCGCCGCTAAAGGTCAG
* * * *
7935781 AGCAATAACGGCATTTATAGAAAAAACGCCGCTAAAGGTCAG
1 AGCATTAGCGGCATTT-TTG-AAAAGCGCCGCTAAAGGTCAG
* * *
7935823 AGCATTAGCAGCATTTTCGAGGAAGCGCCGCTAAAGGTCAG
1 AGCATTAGCGGCATTTTTGA-AAAGCGCCGCTAAAGGTCAG
* * * *
7935864 ATCATTAGCGGCTATTTTGTG-AAGGCACCGCTAAAGGTCAA
1 AGCATTAGCGGC-ATTTT-TGAAAAGCGCCGCTAAAGGTCAG
* * * * *
7935905 AGCATTAGCGACGTTTTTGGGAAAGCGCCACTAAAAGTCAG
1 AGCATTAGCGGCATTTTT-GAAAAGCGCCGCTAAAGGTCAG
7935946 AGCATTAGCGGCATTTATATG-AAAGCGCCGCTAAAGGTCAG
1 AGCATTAGCGGCATTT-T-TGAAAAGCGCCGCTAAAGGTCAG
**
7935987 AGCATTAGCGGTGTTTTTGAAAAAGCGCCGCTAA
1 AGCATTAGCGGCATTTTTG-AAAAGCGCCGCTAA
7936021 TTTATTTACA
Statistics
Matches: 194, Mismatches: 33, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
39 17 0.09
40 11 0.06
41 143 0.74
42 21 0.11
43 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (40 bp):
AGCATTAGCGGCATTTTTGAAAAGCGCCGCTAAAGGTCAG
Found at i:7936280 original size:35 final size:36
Alignment explanation
Indices: 7936241--7936316 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 36
7936231 AGTTTGGATC
*
7936241 AAATTTTGA-GTTTAAA-TTAAGTTTAAATTGGTTTT
1 AAATTTT-ATGTTTAAATTTAAATTTAAATTGGTTTT
* * *
7936276 AAA-TTTATTTTTAAATTTAAATTTAGATTTGTTTT
1 AAATTTTATGTTTAAATTTAAATTTAAATTGGTTTT
7936311 AAATTT
1 AAATTT
7936317 AAATTTAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
33 1 0.03
34 9 0.26
35 22 0.65
36 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (36 bp):
AAATTTTATGTTTAAATTTAAATTTAAATTGGTTTT
Found at i:7936282 original size:6 final size:6
Alignment explanation
Indices: 7936273--7936324 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
7936263 TTAAATTGGT
** * **
7936273 TTTAAA TTTATT TTTAAA TTTAAA TTTAGA TTT-GT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7936320 TTTAA
1 TTTAA
7936325 CTAAATTTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (6 bp):
TTTAAA
Found at i:7936286 original size:11 final size:11
Alignment explanation
Indices: 7936251--7936317 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
7936241 AAATTTTGAG
* *
7936251 TTTAAATTAAG
1 TTTAAATTTAT
**
7936262 TTTAAATTGGT
1 TTTAAATTTAT
7936273 TTTAAATTTATT
1 TTTAAATTTA-T
*
7936285 TTTAAATTTAAA
1 TTTAAATTT-AT
* *
7936297 TTTAGATTTGT
1 TTTAAATTTAT
7936308 TTTAAATTTA
1 TTTAAATTTA
7936318 AATTTAACTA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
11 24 0.56
12 18 0.42
13 1 0.02
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (11 bp):
TTTAAATTTAT
Found at i:7936289 original size:12 final size:12
Alignment explanation
Indices: 7936251--7936324 Score: 55
Period size: 12 Copynumber: 6.4 Consensus size: 12
7936241 AAATTTTGAG
*
7936251 TTTAAA-TTAAG
1 TTTAAATTTAAT
**
7936262 TTTAAA-TTGGT
1 TTTAAATTTAAT
*
7936273 TTTAAATTTATT
1 TTTAAATTTAAT
*
7936285 TTTAAATTTAAA
1 TTTAAATTTAAT
* *
7936297 TTTAGATTT-GT
1 TTTAAATTTAAT
*
7936308 TTTAAATTTAAA
1 TTTAAATTTAAT
7936320 TTTAA
1 TTTAA
7936325 CTAAATTTGA
Statistics
Matches: 48, Mismatches: 13, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
11 22 0.46
12 26 0.54
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (12 bp):
TTTAAATTTAAT
Found at i:7936317 original size:35 final size:34
Alignment explanation
Indices: 7936251--7936317 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
7936241 AAATTTTGAG
*
7936251 TTTAAATTAAGTTTAAATTGGTTTTAAATTTATT
1 TTTAAATTAAATTTAAATTGGTTTTAAATTTATT
* *
7936285 TTTAAATTTAAATTTAGATTTGTTTTAAATTTA
1 TTTAAA-TTAAATTTAAATTGGTTTTAAATTTA
7936318 AATTTAACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 6 0.21
35 23 0.79
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (34 bp):
TTTAAATTAAATTTAAATTGGTTTTAAATTTATT
Found at i:7936324 original size:35 final size:34
Alignment explanation
Indices: 7936251--7936337 Score: 95
Period size: 35 Copynumber: 2.5 Consensus size: 34
7936241 AAATTTTGAG
* **
7936251 TTTAAATTAAGTTTAAATTGGTTTTAAATTTATT
1 TTTAAATTAAATTTAAATTGGTTTTAAATTTAAA
* *
7936285 TTTAAATTTAAATTTAGATTTGTTTTAAATTTAAA
1 TTTAAA-TTAAATTTAAATTGGTTTTAAATTTAAA
*
7936320 TTT-AACTAAATTTGAAAT
1 TTTAAATTAAATTT-AAAT
7936338 AAATGTAAAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
33 7 0.16
34 11 0.25
35 26 0.59
ACGTcount: A:0.39, C:0.01, G:0.07, T:0.53
Consensus pattern (34 bp):
TTTAAATTAAATTTAAATTGGTTTTAAATTTAAA
Found at i:7936823 original size:26 final size:27
Alignment explanation
Indices: 7936794--7936845 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7936784 GTAATGGGTT
7936794 ACGAACCCCTGTT-GAAAAATCAATAG
1 ACGAACCCCTGTTGGAAAAATCAATAG
* *
7936820 ACGAACCCTTTTTGGAAAAATCAATA
1 ACGAACCCCTGTTGGAAAAATCAATA
7936846 CAATCACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.23
Consensus pattern (27 bp):
ACGAACCCCTGTTGGAAAAATCAATAG
Found at i:7938349 original size:29 final size:28
Alignment explanation
Indices: 7938289--7938417 Score: 96
Period size: 29 Copynumber: 4.4 Consensus size: 28
7938279 AACTGTATAG
* * ** *
7938289 AAATTATATTTTGGCCCTGAAACTTCTAA
1 AAATTACATTTTTGCCCCAAAACTTC-CA
*
7938318 AAATTACATCTTTGCCTCCAAAACTTCCA
1 AAATTACATTTTTGCC-CCAAAACTTCCA
* **
7938347 AAATTACATTTTTACCCCCGAACTTCCA
1 AAATTACATTTTTGCCCCAAAACTTCCA
* ** *
7938375 AAATTCCATTTTTGACCCTGAAACTTTCAA
1 AAATTACATTTTTG-CCCCAAAAC-TTCCA
7938405 AAATTACCATTTT
1 AAATTA-CATTTT
7938418 ACACCCGGAT
Statistics
Matches: 79, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
28 22 0.28
29 34 0.43
30 17 0.22
31 6 0.08
ACGTcount: A:0.34, C:0.25, G:0.05, T:0.36
Consensus pattern (28 bp):
AAATTACATTTTTGCCCCAAAACTTCCA
Found at i:7938371 original size:58 final size:58
Alignment explanation
Indices: 7938309--7938561 Score: 193
Period size: 58 Copynumber: 4.3 Consensus size: 58
7938299 TTGGCCCTGA
* * *
7938309 AACTTCTAAAAATTACATCTTTG-CCTCCAAAACTTCCAAAATTACATTTTTACCCCCG
1 AACTTC-AAAAATTCCATTTTTGACCTCTAAAACTTCCAAAATTACATTTTTACCCCCG
* * * *
7938367 AACTTCCAAAATTCCATTTTTGACC-CTGAAACTTTCAAAAATTACCA-TTTTACACCCG
1 AACTTCAAAAATTCCATTTTTGACCTCTAAAAC-TTCCAAAATTA-CATTTTTACCCCCG
* * *
7938425 GA-TGTCCAAAAACTCCATTTTTGACCT-TAAAACTTCCAAAAATTATATTTTTACCCCCG
1 AACT-T-CAAAAATTCCATTTTTGACCTCTAAAACTTCC-AAAATTACATTTTTACCCCCG
* * **
7938484 AA-TGTCCAAAAACTCCATTTTTGA-CTC-GAAACTTTTAAAAATTACCA-TTTTACCCCCG
1 AACT-T-CAAAAATTCCATTTTTGACCTCTAAAAC-TTCCAAAATTA-CATTTTTACCCCCG
*
7938542 -AGTGTCCAAAAATTCCATTT
1 AACT-T-CAAAAATTCCATTT
7938562 GTAATATTGA
Statistics
Matches: 163, Mismatches: 20, Indels: 24
0.79 0.10 0.12
Matches are distributed among these distances:
57 20 0.12
58 75 0.46
59 68 0.42
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.33
Consensus pattern (58 bp):
AACTTCAAAAATTCCATTTTTGACCTCTAAAACTTCCAAAATTACATTTTTACCCCCG
Found at i:7938376 original size:28 final size:28
Alignment explanation
Indices: 7938339--7938494 Score: 95
Period size: 30 Copynumber: 5.4 Consensus size: 28
7938329 TTGCCTCCAA
7938339 AACTTCCAAAATTACATTTTTACCCCCG
1 AACTTCCAAAATTACATTTTTACCCCCG
* *
7938367 AACTTCCAAAATTCCATTTTTGA-CCCTG
1 AACTTCCAAAATTACATTTTT-ACCCCCG
* *
7938395 AAACTTTCAAAAATTACCA-TTTTACACCCG
1 -AAC-TTCCAAAATTA-CATTTTTACCCCCG
* * * ****
7938425 GA-TGTCCAAAAACTCCATTTTTGACCTTAA
1 AACT-TCC-AAAATTACATTTTT-ACCCCCG
*
7938455 AACTTCCAAAAATTATATTTTTACCCCCG
1 AACTTCC-AAAATTACATTTTTACCCCCG
7938484 AA-TGTCCAAAA
1 AACT-TCCAAAA
7938495 ACTCCATTTT
Statistics
Matches: 94, Mismatches: 23, Indels: 22
0.68 0.17 0.16
Matches are distributed among these distances:
27 1 0.01
28 33 0.35
29 23 0.24
30 34 0.36
31 3 0.03
ACGTcount: A:0.35, C:0.27, G:0.06, T:0.32
Consensus pattern (28 bp):
AACTTCCAAAATTACATTTTTACCCCCG
Found at i:7938450 original size:59 final size:58
Alignment explanation
Indices: 7938374--7938561 Score: 236
Period size: 59 Copynumber: 3.2 Consensus size: 58
7938364 CCGAACTTCC
*
7938374 AAAATTCCATTTTTGACCCTGAAACTTTCAAAAATTACCATTTTACACCCGGATGTCCA
1 AAAACTCCATTTTTGACCCTGAAACTTTCAAAAATTACCATTTTAC-CCCGGATGTCCA
* * * * *
7938433 AAAACTCCATTTTTGACCTTAAAACTTCCAAAAATTA-TATTTTTACCCCCGAATGTCCA
1 AAAACTCCATTTTTGACCCTGAAACTTTCAAAAATTACCA-TTTTA-CCCCGGATGTCCA
* * *
7938492 AAAACTCCATTTTTGACTC-GAAACTTTTAAAAATTACCATTTTACCCCCGAGTGTCCA
1 AAAACTCCATTTTTGACCCTGAAACTTTCAAAAATTACCATTTTACCCCGGA-TGTCCA
*
7938550 AAAATTCCATTT
1 AAAACTCCATTT
7938562 GTAATATTGA
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
57 5 0.05
58 37 0.34
59 67 0.61
60 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (58 bp):
AAAACTCCATTTTTGACCCTGAAACTTTCAAAAATTACCATTTTACCCCGGATGTCCA
Found at i:7938484 original size:117 final size:116
Alignment explanation
Indices: 7938337--7938561 Score: 339
Period size: 117 Copynumber: 1.9 Consensus size: 116
7938327 CTTTGCCTCC
*
7938337 AAAACTTCCAAAATTACATTTTTACCCCCGAACT-TCC-AAAATTCCATTTTTGACCCTGAAACT
1 AAAACTTCCAAAATTACATTTTTACCCCCGAA-TGTCCAAAAACTCCATTTTTGACCC-GAAACT
*
7938400 TTCAAAAATTACCATTTTACACCCG-GATGTCCAAAAACTCCATTTTTGACCTT
64 TTCAAAAATTACCATTTTACCCCCGAG-TGTCCAAAAACTCCATTTTTGACCTT
* *
7938453 AAAACTTCCAAAAATTATATTTTTACCCCCGAATGTCCAAAAACTCCATTTTTGACTCGAAACTT
1 AAAACTTCC-AAAATTACATTTTTACCCCCGAATGTCCAAAAACTCCATTTTTGACCCGAAACTT
* *
7938518 TTAAAAATTACCATTTTACCCCCGAGTGTCCAAAAATTCCATTT
65 TCAAAAATTACCATTTTACCCCCGAGTGTCCAAAAACTCCATTT
7938562 GTAATATTGA
Statistics
Matches: 99, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
116 10 0.10
117 71 0.72
118 18 0.18
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (116 bp):
AAAACTTCCAAAATTACATTTTTACCCCCGAATGTCCAAAAACTCCATTTTTGACCCGAAACTTT
CAAAAATTACCATTTTACCCCCGAGTGTCCAAAAACTCCATTTTTGACCTT
Found at i:7938503 original size:29 final size:29
Alignment explanation
Indices: 7938339--7938561 Score: 133
Period size: 29 Copynumber: 7.7 Consensus size: 29
7938329 TTGCCTCCAA
*
7938339 AACTTCC-AAAATTACATTTTTACCCCCG
1 AACTTCCAAAAATTCCATTTTTACCCCCG
*
7938367 AACTTCC-AAAATTCCATTTTTGA-CCCTG
1 AACTTCCAAAAATTCCATTTTT-ACCCCCG
* *
7938395 AAACTTTCAAAAATTACCA-TTTTACACCCG
1 -AACTTCCAAAAATT-CCATTTTTACCCCCG
* * ****
7938425 GA-TGTCCAAAAACTCCATTTTTGACCTTAA
1 AACT-TCCAAAAATTCCATTTTT-ACCCCCG
**
7938455 AACTTCCAAAAATTATATTTTTACCCCCG
1 AACTTCCAAAAATTCCATTTTTACCCCCG
* *
7938484 AA-TGTCCAAAAACTCCATTTTTGA--CTCG
1 AACT-TCCAAAAATTCCATTTTT-ACCCCCG
**
7938512 AAACTTTTAAAAATTACCA-TTTTACCCCCG
1 -AACTTCCAAAAATT-CCATTTTTACCCCCG
*
7938542 -AGTGTCCAAAAATTCCATTT
1 AACT-TCCAAAAATTCCATTT
7938562 GTAATATTGA
Statistics
Matches: 145, Mismatches: 32, Indels: 35
0.68 0.15 0.17
Matches are distributed among these distances:
28 38 0.26
29 64 0.44
30 39 0.27
31 4 0.03
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.33
Consensus pattern (29 bp):
AACTTCCAAAAATTCCATTTTTACCCCCG
Found at i:7938699 original size:29 final size:29
Alignment explanation
Indices: 7938636--7938699 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
7938626 CCAAAATTTC
*
7938636 CCAAAATTACCATTTTTACCCTCGAGAGT
1 CCAAAATTACCATTTTTACCCCCGAGAGT
* * *
7938665 CTAAAATTACCTTTTTTGCCCCCGAGTA-T
1 CCAAAATTACCATTTTTACCCCCGAG-AGT
7938694 CCAAAA
1 CCAAAA
7938700 AGTCTCATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.31, C:0.28, G:0.09, T:0.31
Consensus pattern (29 bp):
CCAAAATTACCATTTTTACCCCCGAGAGT
Found at i:7948660 original size:201 final size:200
Alignment explanation
Indices: 7948315--7948942 Score: 731
Period size: 201 Copynumber: 3.1 Consensus size: 200
7948305 TGACGGCATA
* * * *
7948315 CTGATGAGATACAGAGAAGTATACCAGCTCAGCGCT-CGATGCGAGCAAATCTTCGAACTCTAGC
1 CTGATGAGATACAGAGAAGTATGCCAACTCA-CG-TACGATGCAAGCAAATCTTCGAACCCTAGC
* * *
7948379 TTCCTGATGAGATACTGAGAAGTAGGTCAAATCAATAAAATGGTTAGCTTCCTGATGAGATACTG
64 TTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTG
* *
7948444 AGAAGTGGACCAAATTCGTCTTCCTGATGAGATACTGAGAAGCGAATTGAAACAAGTGAGGCGGT
129 AGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAACAAGTGACGCGGT
*
7948509 CTTCTTC
194 CATCTTC
* *
7948516 CTGATGAGATATAGAGAAGTATGCTAACTCGACGTACGATGCAAGCAAATCTTCGAACCCTAGCT
1 CTGATGAGATACAGAGAAGTATGCCAACTC-ACGTACGATGCAAGCAAATCTTCGAACCCTAGCT
* * *
7948581 TTCTGATGAAATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATATTGA
65 TCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGA
* *
7948646 GAAGTGGACCAAATTCGTCTTCCTAATGAGATACAGAGAAGC-AGATTGAAACAAGTGATGCGGT
130 GAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGA-ATTGAAACAAGTGACGCGGT
7948710 CATCTTC
194 CATCTTC
* * * * ** * * * *
7948717 CTGATTAGATACGGAGAAG-AAGACCAAATCAAACCCACGCTCGATATGAGCAAATCCTCAAACC
1 CTGATGAGATACAGAGAAGTATG-CCAACTC--ACGTACGAT-G-CA--AGCAAATCTTCGAA-C
* * *
7948781 CCCAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAGTGGTTAGCTTCTTGATGAG
58 CCTAGCTTCCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAG
* * * * * * * * * **
7948846 ATACAGAGAAGTGAACCAAATCCGTCTTCCTGTTGAAACACAAAGAAGTGGATCAAAACAAGTGA
123 ATACTGAGAAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAACAAGTGA
* *
7948911 CGCGATCGTCTTC
188 CGCGGTCATCTTC
*
7948924 CTGATGAGATACTGAGAAG
1 CTGATGAGATACAGAGAAG
7948943 AAGGCCAAAT
Statistics
Matches: 364, Mismatches: 52, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
200 4 0.01
201 200 0.55
202 7 0.02
203 1 0.00
204 1 0.00
206 12 0.03
207 139 0.38
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (200 bp):
CTGATGAGATACAGAGAAGTATGCCAACTCACGTACGATGCAAGCAAATCTTCGAACCCTAGCTT
CCTGATGAGATACTGAGAAGCAGGTCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAG
AAGTGGACCAAATTCGTCTTCCTGATGAGATACAGAGAAGCGAATTGAAACAAGTGACGCGGTCA
TCTTC
Found at i:7949332 original size:6 final size:6
Alignment explanation
Indices: 7949311--7949362 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
7949301 TTAGATTGGT
** * **
7949311 TTTAAA TTTATT TTTAAA TTTAAA TTTAGA TTT-GT TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
7949358 TTTAA
1 TTTAA
7949363 CTAAATTTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 4 0.11
6 33 0.89
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (6 bp):
TTTAAA
Found at i:7949860 original size:26 final size:27
Alignment explanation
Indices: 7949831--7949882 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7949821 TTAATGGGTT
7949831 ACGAACCCCTGTT-GAAAAATCAATAG
1 ACGAACCCCTGTTGGAAAAATCAATAG
* *
7949857 ACGAACCCTTTTTGGAAAAATCAATA
1 ACGAACCCCTGTTGGAAAAATCAATA
7949883 CAATCACGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.42, C:0.21, G:0.13, T:0.23
Consensus pattern (27 bp):
ACGAACCCCTGTTGGAAAAATCAATAG
Done.