Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 30 of 163
Found at i:7951410 original size:29 final size:30
Alignment explanation
Indices: 7951367--7951625 Score: 145
Period size: 29 Copynumber: 8.8 Consensus size: 30
7951357 AAAGGTCCTT
* *
7951367 AAACTGTCTAGAAATTATATTTTAGCCCT-G
1 AAACT-TCTAAAAATTACATTTTAGCCCTCG
*
7951397 AAACTTCTAAAAATTACAACTTT-GCCCTCG
1 AAACTTCTAAAAATTAC-ATTTTAGCCCTCG
*
7951427 AAACTT-TCAAAATTACATTTTTA-CCCTCG
1 AAACTTCTAAAAATTACA-TTTTAGCCCTCG
* * *
7951456 -AACTTCTAAAAATTCCATTTTTGACCCT-A
1 AAACTTCTAAAAATTACATTTTAG-CCCTCG
*
7951485 AAACTT-TCAAAAATTACCATTTTA-CCCCCG
1 AAACTTCT-AAAAATTA-CATTTTAGCCCTCG
* * * * *
7951515 -GA-TGTCCAAAAACTACATTTTTGACCTCG
1 AAACT-TCTAAAAATTACATTTTAGCCCTCG
*
7951544 AAACTTCAAAAAATTACATTTTTA-CCCTCG
1 AAACTTCTAAAAATTACA-TTTTAGCCCTCG
* * *
7951574 -AA-TGTCCAAAAACTT-CATTTTTGACC-CG
1 AAACT-TCTAAAAA-TTACATTTTAGCCCTCG
7951602 AAACTT-TCAAAAATTACCATTTTA
1 AAACTTCT-AAAAATTA-CATTTTA
7951626 CCCCCGGGTG
Statistics
Matches: 175, Mismatches: 29, Indels: 50
0.69 0.11 0.20
Matches are distributed among these distances:
28 26 0.15
29 80 0.46
30 58 0.33
31 11 0.06
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (30 bp):
AAACTTCTAAAAATTACATTTTAGCCCTCG
Found at i:7951661 original size:59 final size:58
Alignment explanation
Indices: 7951425--7951760 Score: 269
Period size: 59 Copynumber: 5.7 Consensus size: 58
7951415 ACTTTGCCCT
* * *
7951425 CGAAACTTTC-AAAATTA-CATTTTTACCCTCGAACT-TCTAAAAATTCCATTTTTGACC
1 CGAAACTTTCAAAAATTACCA-TTTTACCCCCGGA-TGTCCAAAAATTCCATTTTTGACC
* * *
7951482 CTAAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAACTACATTTTTGACC
1 C-GAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGACC
* *
7951541 TCGAAAC-TTCAAAAAATTA-CATTTTTACCCTCGAATGTCCAAAAACTT-CATTTTTGACC
1 -CGAAACTTTC-AAAAATTACCA-TTTTACCCCCGGATGTCCAAAAA-TTCCATTTTTGACC
* * *
7951600 CGAAACTTTCAAAAATTACCATTTTACCCCCGGGTGCCCAAAAATTCCATTTATGATCC
1 CGAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGA-CC
* * * * * * ** *
7951659 CG--ATTTTCCTAAAAATTATCGTTTTACCTCTGGATGTCTAAAACGT-CATTTTTAACC
1 CGAAACTTT-C-AAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGACC
* * * *
7951716 CCAAATTTTCCCAAAATTACCATTTTTACCCTCGAGA-GTCCAAAA
1 CGAAACTTT-CAAAAATTACCA-TTTTACCCCCG-GATGTCCAAAA
7951761 TTACCTTTTT
Statistics
Matches: 226, Mismatches: 35, Indels: 34
0.77 0.12 0.12
Matches are distributed among these distances:
57 10 0.04
58 71 0.31
59 139 0.62
60 6 0.03
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (58 bp):
CGAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAATTCCATTTTTGACC
Found at i:7951676 original size:117 final size:117
Alignment explanation
Indices: 7951422--7951655 Score: 341
Period size: 117 Copynumber: 2.0 Consensus size: 117
7951412 ACAACTTTGC
*
7951422 CCTCGAAACTTTC--AAAATTACATTTTTACCCTCGAACT-TCTAAAAA-TTCCATTTTTGACCC
1 CCTCGAAAC-TTCAAAAAATTACATTTTTACCCTCGAA-TGTCCAAAAACTT-CATTTTTGACCC
* *
7951483 TAAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAACTACATTTTTGA
63 -AAAACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
*
7951539 CCTCGAAACTTCAAAAAATTACATTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCGAA
1 CCTCGAAACTTCAAAAAATTACATTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCAAA
* * *
7951604 ACTTTCAAAAATTACCATTTTACCCCCGGGTGCCCAAAAATTCCATTTATGA
66 ACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
7951656 TCCCGATTTT
Statistics
Matches: 106, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
116 3 0.03
117 59 0.56
118 42 0.40
119 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (117 bp):
CCTCGAAACTTCAAAAAATTACATTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCAAA
ACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
Found at i:7951684 original size:117 final size:117
Alignment explanation
Indices: 7951422--7951746 Score: 326
Period size: 117 Copynumber: 2.8 Consensus size: 117
7951412 ACAACTTTGC
* *
7951422 CCTCGAAACTTTC--AAAATTACATTTTTACCCTCGAACT-TCTAAAAA-TTCCATTTTTGACCC
1 CCTCGAAAC-TTCAAAAAATTACAGTTTTACCCTCGAA-TGTCCAAAAACTT-CATTTTTGACCC
* *
7951483 TAAAACTTTCAAAAATTACCATTTTACCCCCGGATGTCCAAAAACTACATTTTTGA
63 -AAAACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
* *
7951539 CCTCGAAACTTCAAAAAATTACATTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCGAA
1 CCTCGAAACTTCAAAAAATTACAGTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCAAA
* * *
7951604 ACTTTCAAAAATTACCATTTTACCCCCGGGTGCCCAAAAATTCCATTTATGA
66 ACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
** * * * * *
7951656 TCC-CG-ATTTTCCTAAAAATTATC-GTTTTA-CCTCTGGATGT-CTAAAACGTCATTTTTAACC
1 -CCTCGAAACTT-CAAAAAATTA-CAGTTTTACCCTC-GAATGTCCAAAAACTTCATTTTTGACC
* * *
7951716 CCAAATTTTCCCAAAATTACCATTTTTACCC
62 CAAAACTTT-CAAAAATTACCA-TTTTACCC
7951747 TCGAGAGTCC
Statistics
Matches: 180, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
116 34 0.19
117 91 0.51
118 53 0.29
119 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (117 bp):
CCTCGAAACTTCAAAAAATTACAGTTTTACCCTCGAATGTCCAAAAACTTCATTTTTGACCCAAA
ACTTTCAAAAATTACCATTTTACCCCCGGATGCCCAAAAACTACATTTATGA
Found at i:7954496 original size:18 final size:18
Alignment explanation
Indices: 7954475--7954511 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7954465 AAATTCTCTT
*
7954475 TCATTTCAAAATTCCTAA
1 TCATTTCAAAATCCCTAA
*
7954493 TCATTTCTAAATCCCTAA
1 TCATTTCAAAATCCCTAA
7954511 T
1 T
7954512 TTCATTCTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
TCATTTCAAAATCCCTAA
Found at i:7957748 original size:6 final size:6
Alignment explanation
Indices: 7957723--7957761 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
7957713 ACAATTCATA
* * *
7957723 TCACTT TCAATT CCAATT TCACTT TCACTT TCACTT TCA
1 TCACTT TCACTT TCACTT TCACTT TCACTT TCACTT TCA
7957762 ATTTTGATCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46
Consensus pattern (6 bp):
TCACTT
Found at i:7959886 original size:122 final size:121
Alignment explanation
Indices: 7959738--7960033 Score: 450
Period size: 122 Copynumber: 2.4 Consensus size: 121
7959728 TCAAAATGCC
* *
7959738 AATAATTAATTATTTAATTAGGTATTTATTAAACCCTAAACTCAAATATTTAATTCAAAATATTA
1 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAA-TCAAATATTTAATTCAAAATACTA
** * *
7959803 AATTATTTAATTATA-TTAAATAAATATTTAATTATTAAAAATAGAACAAATATTAA
65 AATTACATAATTATATTTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
** *
7959859 AATAATTAATTATTGGCATTAGTTATTTATTAAACCTTAAATCGAAATATTTAATTCAAAATACT
1 AATAATTAATTATT-TAATTAGTTATTTATTAAACCCTAAATC-AAATATTTAATTCAAAATACT
* *
7959924 AAATTACATAATTATATTTAAATAAATATTAAATTATTAAAAACATAACAAATATTGA
64 AAATTACATAATTATATTTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
7959982 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAACTATTTA
1 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAA-TATTTA
7960034 GTTATTAAAA
Statistics
Matches: 157, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
121 19 0.12
122 87 0.55
123 51 0.32
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.41
Consensus pattern (121 bp):
AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAATATTTAATTCAAAATACTAA
ATTACATAATTATATTTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
Found at i:7960061 original size:26 final size:26
Alignment explanation
Indices: 7960022--7960082 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
7960012 AAACCCTAAA
7960022 TCAAACTATTTAGTTATTAAA-AACAAC
1 TCAAA-TATTTAGTTATTAAATAA-AAC
7960049 TCAAATATTTAGTTATTAAATAAAAC
1 TCAAATATTTAGTTATTAAATAAAAC
*
7960075 CCAAATAT
1 TCAAATAT
7960083 AACAACTTGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 25 0.78
27 7 0.22
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.34
Consensus pattern (26 bp):
TCAAATATTTAGTTATTAAATAAAAC
Found at i:7960068 original size:123 final size:117
Alignment explanation
Indices: 7959738--7960072 Score: 377
Period size: 122 Copynumber: 2.7 Consensus size: 117
7959728 TCAAAATGCC
* * *
7959738 AATAATTAATTATTTAATTAGGTATTTATTAAACCCTAAACTCAAATATTTAATTCAAAA-TATT
1 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAA-TCAAATATTTAATTAAAAACAATT
* *
7959802 AAATTATTTAATTATATTAAATAAATATTTAATTATTAAAAATAGAACAAATATTAA
65 AAA-TATTT-A-T-TATTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
** *
7959859 AATAATTAATTATTGGCATTAGTTATTTATTAAACCTTAAATCGAAATATTTAATTCAAAATACT
1 AATAATTAATTATT-TAATTAGTTATTTATTAAACCCTAAATC-AAATATTTAATT-AAAA-AC-
* * * *
7959924 AAATTACATAATTA-TATTTAAATAAATATTAAATTATTAAAAACATAACAAATATTGA
61 -AATTAAATATTTATTA-TTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
7959982 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAACTATTTAGTTATTAAAAACA
1 AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAA-TATTTA---ATTAAAAACA
*
7960047 ACTCAAATATTTAGTTATTAAATAAA
62 A-TTAAATATTTA-TTATTAAATAAA
7960073 ACCCAAATAT
Statistics
Matches: 181, Mismatches: 18, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
121 21 0.12
122 75 0.41
123 65 0.36
124 7 0.04
125 4 0.02
126 4 0.02
127 5 0.03
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (117 bp):
AATAATTAATTATTTAATTAGTTATTTATTAAACCCTAAATCAAATATTTAATTAAAAACAATTA
AATATTTATTATTAAATAAATATTAAATTATTAAAAACAGAACAAATATTAA
Found at i:7965494 original size:21 final size:21
Alignment explanation
Indices: 7965470--7965516 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7965460 CTACAACTTA
* *
7965470 AAGCGGTGGTAGCAGCGAAAG
1 AAGCGGAGGCAGCAGCGAAAG
*
7965491 AAGCGGAGGCAGCAGCGAGAG
1 AAGCGGAGGCAGCAGCGAAAG
7965512 AAGCG
1 AAGCG
7965517 AAGGAAGTAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.45, T:0.04
Consensus pattern (21 bp):
AAGCGGAGGCAGCAGCGAAAG
Found at i:7965887 original size:43 final size:44
Alignment explanation
Indices: 7965839--7966144 Score: 121
Period size: 43 Copynumber: 7.1 Consensus size: 44
7965829 TTTAGCAGCA
*
7965839 TTTGTGAG-AAAAACGCCACTAAAAAACAT-TATCTATAGCGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAACATGT-CCTATAGCGGCG
* * * * *
7965882 TTTGTGGGCAAAAACGCCGCTAAAGACCATGTCCTTTAGCGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAACATGTCCTATAGCGGCG
* * ** * * * *
7965926 TTTGTG-GCAAAAGCACCGTTAAAGACCATGTTCTTTAGCGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAACATGTCCTATAGCGGCG
* * ** * * * * * *
7965969 TTTTTAAG-GGAAGCGCCACTAAAGACCATGTTCTTTAGCGACG
1 TTTGTGAGCAAAAACGCCACTAAAAAACATGTCCTATAGCGGCG
** * * * * *
7966012 TTTGTG-GCAAAGGCGCCGCTAAAGACCATGTTCTTTAGCGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAACATGTCCTATAGCGGCG
* * * * * * *
7966055 TTTATG-G-TAAAGCACCGCT-AAAAACAATGTTCTATAGTGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAAC-ATGTCCTATAGCGGCG
* * * * *
7966097 TTTATG-G-GAAAACGCCGCT-AAAGACTATGTTCTATAGCGGCG
1 TTTGTGAGCAAAAACGCCACTAAAAAAC-ATGTCCTATAGCGGCG
7966139 TTTGTG
1 TTTGTG
7966145 TTTAGCGGCG
Statistics
Matches: 218, Mismatches: 40, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
41 4 0.02
42 65 0.30
43 113 0.52
44 35 0.16
45 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (44 bp):
TTTGTGAGCAAAAACGCCACTAAAAAACATGTCCTATAGCGGCG
Found at i:7966008 original size:86 final size:87
Alignment explanation
Indices: 7965896--7966141 Score: 311
Period size: 86 Copynumber: 2.9 Consensus size: 87
7965886 TGGGCAAAAA
* * *
7965896 CGCCGCTAAAGACCATGTCCTTTAGCGGCGTTTGTGGCAAAAGCACCGTTAAAGACCATGTTCTT
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGACCATGTTCTT
*
7965961 TAGCGGCGTTTTTAAGG-GAAG
66 TAGCGGCGTTTTTAAGGTAAAG
* * *
7965982 CGCCACTAAAGACCATGTTCTTTAGCGACGTTTGTGGCAAAGGCGCCGCTAAAGACCATGTTCTT
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGACCATGTTCTT
*
7966047 TAGCGGCG--TTTATGGTAAAG
66 TAGCGGCGTTTTTAAGGTAAAG
* * * * * * * * *
7966067 CACCGCTAAAAACAATGTTCTATAGTGGCGTTTATGGGAAAA-CGCCGCTAAAGACTATGTTCTA
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGACCATGTTCTT
7966131 TAGCGGCGTTT
66 TAGCGGCGTTT
7966142 GTGTTTAGCG
Statistics
Matches: 137, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
84 34 0.25
85 35 0.26
86 68 0.50
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (87 bp):
CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGACCATGTTCTT
TAGCGGCGTTTTTAAGGTAAAG
Found at i:7966086 original size:42 final size:41
Alignment explanation
Indices: 7965896--7966141 Score: 267
Period size: 43 Copynumber: 5.8 Consensus size: 41
7965886 TGGGCAAAAA
* *
7965896 CGCCGCTAAAGACCATGTCCTTTAGCGGCGTTTGTGGCAAAAG
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTATGG--AAAG
* * * *
7965939 CACCGTTAAAGACCATGTTCTTTAGCGGCGTTTTTAAGGGAAG
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCG--TTTATGGAAAG
* * *
7965982 CGCCACTAAAGACCATGTTCTTTAGCGACGTTTGTGGCAAAGG
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTATGG-AAA-G
7966025 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTATGGTAAAG
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTATGG-AAAG
* * * * * *
7966067 CACCGCTAAAAACAATGTTCTATAGTGGCGTTTATGGGAAAA
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTAT-GGAAAG
* *
7966109 CGCCGCTAAAGACTATGTTCTATAGCGGCGTTT
1 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTT
7966142 GTGTTTAGCG
Statistics
Matches: 171, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
41 5 0.03
42 65 0.38
43 96 0.56
45 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (41 bp):
CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTATGGAAAG
Found at i:7966152 original size:16 final size:16
Alignment explanation
Indices: 7966131--7966161 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7966121 CTATGTTCTA
*
7966131 TAGCGGCGTTTGTGTT
1 TAGCGGCGCTTGTGTT
7966147 TAGCGGCGCTTGTGT
1 TAGCGGCGCTTGTGT
7966162 GGAAAGCGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.16, G:0.39, T:0.39
Consensus pattern (16 bp):
TAGCGGCGCTTGTGTT
Found at i:7967402 original size:18 final size:19
Alignment explanation
Indices: 7967364--7967403 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
7967354 TTATATTTTA
*
7967364 AAAAAATATTAATTATTAT
1 AAAAAATATTAATTATGAT
*
7967383 AAAAATTATTAA-TATGAT
1 AAAAAATATTAATTATGAT
7967401 AAA
1 AAA
7967404 TAAAAGTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAAAATATTAATTATGAT
Found at i:7970019 original size:2 final size:2
Alignment explanation
Indices: 7970014--7970039 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7970004 TATACTCTCA
7970014 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7970040 TTCTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7972159 original size:19 final size:19
Alignment explanation
Indices: 7972095--7972161 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
7972085 AAAATTACGT
*
7972095 ATTTAAAATATAAATTTATA
1 ATTTAAAAT-TAAATATATA
* *
7972115 TTTTAAAAAT-AATATAATA
1 ATTTAAAATTAAATAT-ATA
7972134 A-TT--AATTAAATATATA
1 ATTTAAAATTAAATATATA
7972150 ATTTAAAATTAA
1 ATTTAAAATTAA
7972162 TTAATATAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 11
0.70 0.09 0.21
Matches are distributed among these distances:
16 7 0.19
17 7 0.19
18 6 0.16
19 10 0.27
20 7 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
ATTTAAAATTAAATATATA
Found at i:7985669 original size:17 final size:17
Alignment explanation
Indices: 7985647--7985682 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
7985637 TAAAATGTAA
*
7985647 TTTTATTATATATTAAT
1 TTTTATTATATATAAAT
7985664 TTTTATTATATATAAAT
1 TTTTATTATATATAAAT
7985681 TT
1 TT
7985683 CTTAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTATTATATATAAAT
Found at i:7988846 original size:15 final size:17
Alignment explanation
Indices: 7988826--7988868 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
7988816 TTTAATCTTT
7988826 TAAAAATTATAA-A-AA
1 TAAAAATTATAATATAA
7988841 TAAAAATTATTAATATAA
1 TAAAAATTA-TAATATAA
7988859 T-AAAATTATA
1 TAAAAATTATA
7988869 TTTTTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.36
16 5 0.20
17 8 0.32
18 3 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TAAAAATTATAATATAA
Found at i:7989385 original size:18 final size:19
Alignment explanation
Indices: 7989358--7989393 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7989348 TAGCTCACCC
7989358 CATCTCTTCC-TTTCCCTT
1 CATCTCTTCCATTTCCCTT
*
7989376 CATCTTTTCCATTTCCCT
1 CATCTCTTCCATTTCCCT
7989394 CCTTGTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (19 bp):
CATCTCTTCCATTTCCCTT
Found at i:8006316 original size:21 final size:21
Alignment explanation
Indices: 8006283--8006328 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
8006273 ATTTATAACA
*
8006283 TTTTTATTGTTTTTAACTATTT
1 TTTTTACTGTTTTTAA-TATTT
8006305 TTTTTACT-TTTTTAATATTT
1 TTTTTACTGTTTTTAATATTT
8006325 TTTT
1 TTTT
8006329 GAAAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
21 7 0.30
22 7 0.30
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTACTGTTTTTAATATTT
Found at i:8023276 original size:21 final size:21
Alignment explanation
Indices: 8023252--8023320 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
8023242 AGGGGGGAAA
*
8023252 AATCTATTTAAAACAACAAAC
1 AATCAATTTAAAACAACAAAC
* * *
8023273 AATCGATTCAAAGA-AGA-AAAT
1 AATCAATTTAAA-ACA-ACAAAC
*
8023294 AATCAATTTAAAACAACCAAC
1 AATCAATTTAAAACAACAAAC
8023315 AATCAA
1 AATCAA
8023321 AGAAGCAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
20 2 0.05
21 33 0.89
22 2 0.05
ACGTcount: A:0.58, C:0.17, G:0.04, T:0.20
Consensus pattern (21 bp):
AATCAATTTAAAACAACAAAC
Found at i:8023522 original size:55 final size:55
Alignment explanation
Indices: 8023396--8023719 Score: 398
Period size: 55 Copynumber: 5.8 Consensus size: 55
8023386 GTATTACGTA
* * * *
8023396 ACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAAGTAGTATTCCACCATA
1 ACAATCGATTTAAACATATAAACAATCGATTC-AAAAGAAGCAGTATTCCAACATG
* * *
8023452 ATAATTGATTTAAACATATAAATAATCGATTCAAAAGAAGCAGTATTCCAACATG
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
* * * * *
8023507 ACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGAAGAAGCAATATTTCACCATA
1 ACAATCGATTTAAACATATAAACAATCGATTC-----AA-AAGAAGCAGTATTCCAACATG
*
8023568 ACAATCGATTTAAACATATTAAA-AATCGATTCAAAAGAAGCAGTATTCCAACACG
1 ACAATCGATTTAAACATA-TAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
* * *
8023623 ACAATCGATTTAAACATATAAACAATCGATTCGAAAGAAACAGTGTTCCAACATG
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
* * *
8023678 ACAATCGATTTAAACATAAAAATAATCGATCCAAAAGAAGCA
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCA
8023720 ATATCTTTGA
Statistics
Matches: 232, Mismatches: 28, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
54 4 0.02
55 148 0.64
56 31 0.13
60 2 0.01
61 43 0.19
62 4 0.02
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.24
Consensus pattern (55 bp):
ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAGCAGTATTCCAACATG
Found at i:8023604 original size:116 final size:112
Alignment explanation
Indices: 8023396--8023719 Score: 458
Period size: 116 Copynumber: 2.9 Consensus size: 112
8023386 GTATTACGTA
* * *
8023396 ACAATCGATTTAAACATATAAACAATCGATTCAAAA-AAAAGTAGTATTCCACCATAATAATTGA
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAAAGAAGTATTCCACCATAACAATCGA
*
8023460 TTTAAACATATAAATAATCGATTCAAAAGAAGCAGTATTCCAACATG
66 TTTAAACATATAAATAATCGATTCAAAAGAAGCAGTATTCCAACACG
* *
8023507 ACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGAAGAAGCAATATTTCACCATAACAA
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAA-AAGAAG---TATTCCACCATAACAA
8023572 TCGATTTAAACATATTAAA-AATCGATTCAAAAGAAGCAGTATTCCAACACG
62 TCGATTTAAACATA-TAAATAATCGATTCAAAAGAAGCAGTATTCCAACACG
* * * * *
8023623 ACAATCGATTTAAACATATAAACAATCGATTCGAAAG-AAA-CAGTGTTCCAACATGACAATCGA
1 ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAAAGAAGTATTCCACCATAACAATCGA
* *
8023686 TTTAAACATAAAAATAATCGATCCAAAAGAAGCA
66 TTTAAACATATAAATAATCGATTCAAAAGAAGCA
8023720 ATATCTTTGA
Statistics
Matches: 191, Mismatches: 15, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
109 3 0.02
110 44 0.23
111 35 0.18
112 2 0.01
113 7 0.04
114 2 0.01
115 1 0.01
116 93 0.49
117 4 0.02
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.24
Consensus pattern (112 bp):
ACAATCGATTTAAACATATAAACAATCGATTCAAAAGAAAAGAAGTATTCCACCATAACAATCGA
TTTAAACATATAAATAATCGATTCAAAAGAAGCAGTATTCCAACACG
Found at i:8023680 original size:171 final size:172
Alignment explanation
Indices: 8023394--8023717 Score: 490
Period size: 171 Copynumber: 1.9 Consensus size: 172
8023384 TTGTATTACG
* * * * *
8023394 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAAGTAGTATTCCACCATAATAATTG
1 TAACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAAGCAGTATTCCAACACAACAATCG
* * *
8023459 ATTTAAACATATAAATAATCGATTCAAAAGAAGCAGTATTCCAACATGACAATTGATTTAAACAT
66 ATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTCCAACATGACAATCGATTTAAACAT
* *
8023524 ATAAACAATCGATTCAAAAGAAGAAGAAGCAATATTTCACCA
131 AAAAACAATCGATCCAAAAGAAGAAGAAGCAATATTTCACCA
* *
8023566 TAACAATCGATTTAAACATATTAAA-AATCGATTC-AAAAGAAGCAGTATTCCAACACGACAATC
1 TAACAATCGATTTAAACATA-TAAACAATCGATTCAAAAAAAAGCAGTATTCCAACACAACAATC
* *
8023629 GATTTAAACATATAAACAATCGATTCGAAAGAAACAGTGTTCCAACATGACAATCGATTTAAACA
65 GATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTCCAACATGACAATCGATTTAAACA
*
8023694 TAAAAATAATCGATCCAAAAGAAG
130 TAAAAACAATCGATCCAAAAGAAG
8023718 CAATATCTTT
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
171 103 0.76
172 29 0.21
173 4 0.03
ACGTcount: A:0.49, C:0.16, G:0.10, T:0.25
Consensus pattern (172 bp):
TAACAATCGATTTAAACATATAAACAATCGATTCAAAAAAAAGCAGTATTCCAACACAACAATCG
ATTTAAACATATAAACAATCGATTCAAAAGAAACAGTATTCCAACATGACAATCGATTTAAACAT
AAAAACAATCGATCCAAAAGAAGAAGAAGCAATATTTCACCA
Found at i:8025621 original size:20 final size:19
Alignment explanation
Indices: 8025596--8025648 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
8025586 TTCAAATTTA
*
8025596 TTTTTAAATTTAAATTTATC
1 TTTTTAAATTTAAATTT-GC
8025616 TTTTTAAATTTAAATTTGC
1 TTTTTAAATTTAAATTTGC
8025635 --TTTAAATTTAAATT
1 TTTTTAAATTTAAATT
8025649 CAATCAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 14 0.44
19 1 0.03
20 17 0.53
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTTAAATTTAAATTTGC
Found at i:8027629 original size:29 final size:28
Alignment explanation
Indices: 8027530--8027646 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 28
8027520 GGAGGTCCCT
* *
8027530 AAACTGTCCAAAAATTATATTTTGACCCTC
1 AAACT-TCCAAAAATTACATTTTAACCC-C
* * * **
8027560 GAACTTCTCTAAAATTACATTTAAACCTTA
1 AAACTTC-CAAAAATTACATTTTAACC-CC
* *
8027590 AAAATTTCAAAAATTACATTTTTAACCCC
1 AAACTTCCAAAAATTACA-TTTTAACCCC
8027619 AAACTTCCAAAAATTACATTTTGAACCC
1 AAACTTCCAAAAATTACATTTT-AACCC
8027647 TAAAATTACC
Statistics
Matches: 67, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
28 4 0.06
29 33 0.49
30 30 0.45
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.33
Consensus pattern (28 bp):
AAACTTCCAAAAATTACATTTTAACCCC
Found at i:8027651 original size:59 final size:59
Alignment explanation
Indices: 8027538--8027651 Score: 142
Period size: 59 Copynumber: 1.9 Consensus size: 59
8027528 CTAAACTGTC
* * * * *
8027538 CAAAAATTATATTTTGACCCTCGAACTTCTCTAAAATTACATTTAAACCTTAAAAATTT
1 CAAAAATTACATTTTAACCCTCAAACTTCTCAAAAATTACATTTAAACCCTAAAAATTT
*
8027597 CAAAAATTACATTTTTAACCC-CAAACTTC-CAAAAATTACATTTTGAACCCTAAAA
1 CAAAAATTACA-TTTTAACCCTCAAACTTCTCAAAAATTACA-TTTAAACCCTAAAA
8027652 TTACCATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 10 0.21
59 29 0.62
60 8 0.17
ACGTcount: A:0.43, C:0.21, G:0.03, T:0.33
Consensus pattern (59 bp):
CAAAAATTACATTTTAACCCTCAAACTTCTCAAAAATTACATTTAAACCCTAAAAATTT
Found at i:8027710 original size:58 final size:59
Alignment explanation
Indices: 8027648--8027782 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 59
8027638 TTTGAACCCT
* *
8027648 AAAATTACCATTTTACCCCCAAATGTCCAAAAATCCCATTTTT-ATCCCGA-TTTTTCTA
1 AAAATTACCATTTTACCCCCAAATGTCCAAAAATCCCATTTTTAACCCCAATTTTTTC-A
* * * * * ** *
8027706 AAAATTACCGTTTTACCCTCGATTGTCTAAAAATGTCATTTTTAACCCCAATTTTTTCC
1 AAAATTACCATTTTACCCCCAAATGTCCAAAAATCCCATTTTTAACCCCAATTTTTTCA
8027765 AAAATTACCATTTTACCC
1 AAAATTACCATTTTACCC
8027783 TAAAAAGCCC
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
58 36 0.56
59 22 0.34
60 6 0.09
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (59 bp):
AAAATTACCATTTTACCCCCAAATGTCCAAAAATCCCATTTTTAACCCCAATTTTTTCA
Found at i:8027899 original size:146 final size:147
Alignment explanation
Indices: 8027648--8027981 Score: 363
Period size: 146 Copynumber: 2.3 Consensus size: 147
8027638 TTTGAACCCT
* * * * * * * *
8027648 AAAATTACCATTTTACCCCCAAATGTCCAAAAA-TCCCA-TTTTTATCCCGATTTTTCTAAAAAT
1 AAAATTACCATTTTGCCCCTAGATATCCAAAAAGTCTCATTTTTTATCCCAATTCTTCCAAAAAT
*** * *
8027711 TACCGTTTTACCCTCGATTGTCTAAAAATGTCATTTTTAACCCC-AATTTTTTCCAAAATTACCA
66 TACCGTTTTACCCTCGAACATCTAAAAATGTCATTTCTAACCCCAAATTTTCT-CAAAATTACCA
*
8027775 TTTTACCCTAAAAAGCCC
130 TTTTACCCCAAAAAGCCC
*
8027793 AAAATTACCATTTTGCCCCTAGACATCCAAAAAGTCTCATTTTTTATCCCAATTCTTCCAAAAAT
1 AAAATTACCATTTTGCCCCTAGATATCCAAAAAGTCTCATTTTTTATCCCAATTCTTCCAAAAAT
* * **
8027858 TA-CGTTTTTACCCTCGAACAT-TTAAAATGTCATTTCTAACCCCAAATTTTCTCAAAGTTACTG
66 TACCG-TTTTACCCTCGAACATCTAAAAATGTCATTTCTAACCCCAAATTTTCTCAAAATTACCA
* ** * * *
8027921 TTTTTCCCCCGAGAGTCT
130 TTTTACCCCAAAAAGCCC
* * *
8027939 AAAATTACCATTTTGCCCCTGGGTATCCAAAAAGTATCATTTT
1 AAAATTACCATTTTGCCCCTAGATATCCAAAAAGTCTCATTTT
8027982 CAACCCCGAT
Statistics
Matches: 156, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
145 28 0.18
146 84 0.54
147 44 0.28
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (147 bp):
AAAATTACCATTTTGCCCCTAGATATCCAAAAAGTCTCATTTTTTATCCCAATTCTTCCAAAAAT
TACCGTTTTACCCTCGAACATCTAAAAATGTCATTTCTAACCCCAAATTTTCTCAAAATTACCAT
TTTACCCCAAAAAGCCC
Found at i:8030264 original size:17 final size:19
Alignment explanation
Indices: 8030242--8030277 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
8030232 TGGATATATC
8030242 AAGAAAAA-TGT-ATGAAA
1 AAGAAAAACTGTGATGAAA
8030259 AAGAAAAACTGTGATGAAA
1 AAGAAAAACTGTGATGAAA
8030278 GCCTAAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17
Consensus pattern (19 bp):
AAGAAAAACTGTGATGAAA
Found at i:8033241 original size:17 final size:17
Alignment explanation
Indices: 8033211--8033244 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8033201 TTATCACAAT
* *
8033211 AATTTGTTTTTATAAAA
1 AATTTCTTTATATAAAA
8033228 AATTTCTTTATATAAAA
1 AATTTCTTTATATAAAA
8033245 TATTAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
AATTTCTTTATATAAAA
Found at i:8038074 original size:131 final size:131
Alignment explanation
Indices: 8037851--8038143 Score: 480
Period size: 131 Copynumber: 2.2 Consensus size: 131
8037841 ATTTGCCACA
*
8037851 ATCAACTTTAACGAAAAAGCTTAATTGATTTCTTTATTGAACCATTTCAAGTAGTGGCGTGAATT
1 ATCAACTTTAACGAAAAAGCTTAATTGATTTCTTTATTGAACCATTTCAAGTAGTGGCGCGAATT
8037916 TGGGACATCAATATCAACTACAATTGACATATCATATACTATTACCTTGTGTAATCATTCGTCAC
66 TGGGACATCAATATCAACTACAATTGACATATCATATACTATTACCTTGTGTAATCATTCGTCAC
8037981 C
131 C
8037982 ATCAACTTTAACGAAAGAA-CTTAATTGATTTCTTTATTGAACCATTTCAAGTAGTGGCGCGAAT
1 ATCAACTTTAACGAAA-AAGCTTAATTGATTTCTTTATTGAACCATTTCAAGTAGTGGCGCGAAT
* ** * * * *
8038046 TTGTGACATTGATATCAACTGCAGTTGACATATCATATACTATTGCCTTGTGTAATCATTTGTCA
65 TTGGGACATCAATATCAACTACAATTGACATATCATATACTATTACCTTGTGTAATCATTCGTCA
*
8038111 CG
130 CC
*
8038113 ATCAACTTTAATGAAAAAGCTTAATTGATTT
1 ATCAACTTTAACGAAAAAGCTTAATTGATTT
8038144 TCAGGCATTT
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
130 2 0.01
131 146 0.97
132 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (131 bp):
ATCAACTTTAACGAAAAAGCTTAATTGATTTCTTTATTGAACCATTTCAAGTAGTGGCGCGAATT
TGGGACATCAATATCAACTACAATTGACATATCATATACTATTACCTTGTGTAATCATTCGTCAC
C
Found at i:8039979 original size:15 final size:15
Alignment explanation
Indices: 8039951--8039991 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
8039941 TGATAAATTT
*
8039951 AAAAATTAAATGTTG
1 AAAAATTAAGTGTTG
*
8039966 AAAAAATAAGTGTTG
1 AAAAATTAAGTGTTG
8039981 AAAAATTAAGT
1 AAAAATTAAGT
8039992 AGTAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (15 bp):
AAAAATTAAGTGTTG
Found at i:8040206 original size:19 final size:21
Alignment explanation
Indices: 8040172--8040210 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
8040162 AAAATTTTGT
8040172 ATAAGATAATATAACATTAAA
1 ATAAGATAATATAACATTAAA
8040193 ATAA-ATAA-ATAACATTAA
1 ATAAGATAATATAACATTAA
8040211 TTAATTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.28
Consensus pattern (21 bp):
ATAAGATAATATAACATTAAA
Found at i:8045030 original size:16 final size:16
Alignment explanation
Indices: 8045009--8045043 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
8044999 TTTCGTTTTC
*
8045009 GTTAACGAATGTAGGT
1 GTTAACGAATGTAGAT
8045025 GTTAACGAATGTAGAT
1 GTTAACGAATGTAGAT
8045041 GTT
1 GTT
8045044 GTGTTTAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (16 bp):
GTTAACGAATGTAGAT
Found at i:8053718 original size:16 final size:14
Alignment explanation
Indices: 8053689--8053732 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
8053679 ACTTAAATTC
*
8053689 AACATTTAATTTTT
1 AACACTTAATTTTT
*
8053703 CAATACTTATATTTTT
1 -AACACTTA-ATTTTT
8053719 AACACTTAATTTTT
1 AACACTTAATTTTT
8053733 TAATTTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 6 0.24
15 13 0.52
16 6 0.24
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (14 bp):
AACACTTAATTTTT
Found at i:8055315 original size:15 final size:16
Alignment explanation
Indices: 8055292--8055324 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
8055282 ATTTTTTTTG
*
8055292 AAATTAAAAT-TTAAA
1 AAATGAAAATATTAAA
8055307 AAATGAAAATATTAAA
1 AAATGAAAATATTAAA
8055323 AA
1 AA
8055325 TAATAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (16 bp):
AAATGAAAATATTAAA
Found at i:8055368 original size:19 final size:19
Alignment explanation
Indices: 8055344--8055401 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
8055334 ATCATTTTAA
*
8055344 TTTTTTTTTATCTTTTCCT
1 TTTTTTTTTATCTTTCCCT
**
8055363 TTTTTTACTATCTTTCCCT
1 TTTTTTTTTATCTTTCCCT
* *
8055382 TTTTCTTTTAT-TTTCTCT
1 TTTTTTTTTATCTTTCCCT
8055400 TT
1 TT
8055402 GCATTTTCCT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 8 0.25
19 24 0.75
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTTTTTTATCTTTCCCT
Found at i:8055876 original size:18 final size:19
Alignment explanation
Indices: 8055853--8055888 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8055843 AATTTTTTAA
*
8055853 AAAAATT-CAAAGAAGTAT
1 AAAAATTCCAAAAAAGTAT
8055871 AAAAATTCCAAAAAAGTA
1 AAAAATTCCAAAAAAGTA
8055889 AAAGAATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.19
Consensus pattern (19 bp):
AAAAATTCCAAAAAAGTAT
Found at i:8055903 original size:19 final size:18
Alignment explanation
Indices: 8055881--8055942 Score: 61
Period size: 20 Copynumber: 3.3 Consensus size: 18
8055871 AAAAATTCCA
8055881 AAAAAGTAAAAGAATGATT
1 AAAAAGTAAAA-AATGATT
* *
8055900 AAAAAGTTAAAAATTATT
1 AAAAAGTAAAAAATGATT
* *
8055918 AAAAAGCATAAAAATTAATT
1 AAAAAG--TAAAAAATGATT
8055938 AAAAA
1 AAAAA
8055943 TATAAATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
18 12 0.33
19 10 0.28
20 14 0.39
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (18 bp):
AAAAAGTAAAAAATGATT
Found at i:8055947 original size:19 final size:19
Alignment explanation
Indices: 8055865--8055948 Score: 84
Period size: 19 Copynumber: 4.5 Consensus size: 19
8055855 AAATTCAAAG
***
8055865 AAGTATAAAAATTCCAAAA
1 AAGTATAAAAATTATTAAA
*
8055884 AAGTA-AAAGAATGATTAAA
1 AAGTATAAA-AATTATTAAA
8055903 AAGT-TAAAAATTATTAAA
1 AAGTATAAAAATTATTAAA
*
8055921 AAGCATAAAAATTAATTAAA
1 AAGTATAAAAATT-ATTAAA
8055941 AA-TATAAA
1 AAGTATAAA
8055949 TATATTTAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
18 15 0.28
19 31 0.57
20 8 0.15
ACGTcount: A:0.64, C:0.04, G:0.07, T:0.25
Consensus pattern (19 bp):
AAGTATAAAAATTATTAAA
Found at i:8056928 original size:1 final size:1
Alignment explanation
Indices: 8056922--8056950 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
8056912 TGAAAATTGG
8056922 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8056951 GGTCTACCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8057585 original size:29 final size:30
Alignment explanation
Indices: 8057530--8057587 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
8057520 TACGTTTAAA
*
8057530 TATTTTTTTAAAAAATTATGTTTAAATATC
1 TATTTTTTTAAAAAATTATGTTAAAATATC
*
8057560 TATTTTTCTTTAAAAA-TAT-TTAAAATAT
1 TATTTTT-TTAAAAAATTATGTTAAAATAT
8057588 TTAAAATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 8 0.32
30 10 0.40
31 7 0.28
ACGTcount: A:0.41, C:0.03, G:0.02, T:0.53
Consensus pattern (30 bp):
TATTTTTTTAAAAAATTATGTTAAAATATC
Found at i:8062141 original size:24 final size:24
Alignment explanation
Indices: 8062114--8062159 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
8062104 TTTGATATAT
**
8062114 TAAATATGACTATTTTTTAATAAA
1 TAAATATGACTAGCTTTTAATAAA
8062138 TAAATATGACTAGCTTTTAATA
1 TAAATATGACTAGCTTTTAATA
8062160 TTGTAGTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (24 bp):
TAAATATGACTAGCTTTTAATAAA
Found at i:8063421 original size:17 final size:18
Alignment explanation
Indices: 8063382--8063422 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
8063372 GAAATATTTA
8063382 TTTTAATGGTATTAATGT
1 TTTTAATGGTATTAATGT
*
8063400 ATTTAAT-GTATTATAT-T
1 TTTTAATGGTATTA-ATGT
8063417 TTTTAA
1 TTTTAA
8063423 ATTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (18 bp):
TTTTAATGGTATTAATGT
Found at i:8064338 original size:78 final size:77
Alignment explanation
Indices: 8064210--8064366 Score: 253
Period size: 78 Copynumber: 2.0 Consensus size: 77
8064200 TGCAATGCCG
*
8064210 AAACTGCCGACATTTTTTTACCTGATGGTGCTGGAGGGACGGATGCTGTGAACGACAATTTCTGT
1 AAACTGCCGACATTTTTTTACCTGATGGTGCTGGAGAGACGGATGCTGTGAACGACAATTTCTGT
*
8064275 CATGATGATGGT
66 CATGATGACGGT
* *
8064287 AAACTGCCGACATTTTTTTTAACC-GCTGGTGCTGGAGAGACGGATGCTGTGAACTACAATTTCT
1 AAACTGCCGACA-TTTTTTT-ACCTGATGGTGCTGGAGAGACGGATGCTGTGAACGACAATTTCT
8064351 GTCATGATGACGGT
64 GTCATGATGACGGT
8064365 AA
1 AA
8064367 TTACATAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
77 12 0.16
78 59 0.80
79 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (77 bp):
AAACTGCCGACATTTTTTTACCTGATGGTGCTGGAGAGACGGATGCTGTGAACGACAATTTCTGT
CATGATGACGGT
Found at i:8071566 original size:27 final size:27
Alignment explanation
Indices: 8071531--8071588 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
8071521 AACATTTATT
*
8071531 TAATATAATTAAAATGATAATTTTTTTG
1 TAATATAATTAAAAT-ATAATCTTTTTG
* *
8071559 TAAT-TAATTAAACTTTAATCTTTTTG
1 TAATATAATTAAAATATAATCTTTTTG
8071585 TAAT
1 TAAT
8071589 GGCTTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 14 0.52
27 9 0.33
28 4 0.15
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (27 bp):
TAATATAATTAAAATATAATCTTTTTG
Found at i:8077036 original size:35 final size:35
Alignment explanation
Indices: 8076990--8077060 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
8076980 CAATCCTGAG
8076990 ATCTTTATAATGTGTTTCAAGATGATATCCATTCT
1 ATCTTTATAATGTGTTTCAAGATGATATCCATTCT
8077025 ATCTTTATAATGTGTTTCAAGATGATATCCATTCT
1 ATCTTTATAATGTGTTTCAAGATGATATCCATTCT
8077060 A
1 A
8077061 ACCATGGCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.45
Consensus pattern (35 bp):
ATCTTTATAATGTGTTTCAAGATGATATCCATTCT
Found at i:8077342 original size:157 final size:157
Alignment explanation
Indices: 8077039--8077842 Score: 605
Period size: 157 Copynumber: 5.0 Consensus size: 157
8077029 TTATAATGTG
* * * * * *
8077039 TTTCAAGATGATATCCATTCTAACCATGGCCAACATAAAATTTACTTTATATCACCGAGTGACCT
1 TTTCAAGATCATATCCATTCTAACCATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
* * * * * *
8077104 TAAAACTTCC-ACTACTTTATAAGCAATCACAAAATTGGATATCGTCTGGTTACCAAAATAACTG
66 TAAAAC-TCCTTCTTCTTTATAAGTAATCACAAAA-TGGATATCATCTGGTTACAAAAATGACTG
* * *
8077168 GCATTTGACGATAACCAAAGT-AGACTCGT
129 ACATTTGACAATAACCAAAGTAAG-CTCAT
* ** * * *
8077197 TTTCAAGATCATATCCGTAGTAAACATGTCCAACATGAAATCTACATAATATCACCCACTGACCT
1 TTTCAAGATCATATCCATTCTAACCATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
* * *
8077262 TAAAAC-CCTTCTTCTTTATAAGTAACCAC-AAATCCGGGTATCATCTGGTTACTAAAATGACTG
66 TAAAACTCCTTCTTCTTTATAAGTAATCACAAAAT--GGATATCATCTGGTTACAAAAATGACTG
* *
8077325 ACATTTGACAATTACCAAAGTAAGCCCAT
129 ACATTTGACAATAACCAAAGTAAGCTCAT
* *
8077354 TTTCAAGATCATATCCATTCTAACCATGTACAACATGAAATTTACTTCATAAT-ACCCACTGACC
1 TTTCAAGATCATATCCATTCTAACCATGTCCAACATGAAATTTACTTAAT-ATCACCCACTGACC
* * * *
8077418 TTAAAACTTTAGCTTCTTCTTTGTAAGTAATTACAAGAATGGATATCATCCGGTTACAAAAATGA
65 TTAAAAC--T-CCTTCTTCTTTATAAGTAATCACAA-AATGGATATCATCTGGTTACAAAAATGA
* * *
8077483 CCGACATTTAACAATAACCAAATTAAGCTCAT
126 CTGACATTTGACAATAACCAAAGTAAGCTCAT
* * * * *
8077515 TTTCAAGAT-AAATTCCATTCTAAACATGTCAAACATGATTTTTACGTTTTTACTTTATATCACC
1 TTTCAAGATCATA-TCCATTCTAACCATGTCCAACATGA-----A---ATTTACTTAATATCACC
* * * * * ** * *
8077579 CAAT-A-C-TAAAACT--TTCATTTCTTTTTAACTGACCACAAAATCAAATATCACCCT-ATTAC
57 CACTGACCTTAAAACTCCTTC--TTCTTTATAAGTAATCACAAAAT-GGATATCA-TCTGGTTAC
* * * *
8077638 TAAAATGACTGACATTTTAGACAATAACCAGAGCAAACTCAT
118 AAAAATGACTGACA-TTT-GACAATAACCAAAGTAAGCTCAT
* * * * * * *
8077680 TTTCAACATAAAATCCATTCTAGCCATGTCCAACATGAAATTCAGTTTATATCACCCAC--A--T
1 TTTCAAGATCATATCCATTCTAACCATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
** * * * * * * *
8077741 TAAAACTCCCACTTCTTTATAAGTAACCACAAAATGGGATATCATTTGATTACCAAAACGATTAA
66 TAAAACTCCTTCTTCTTTATAAGTAATCACAAAAT-GGATATCATCTGGTTACAAAAATGACTGA
* *
8077806 CATTTGACAATAACCAAAATAACTCTCAT
130 CATTTGACAATAACCAAAGTAA-GCTCAT
8077835 CTTTCAAG
1 -TTTCAAG
8077843 TTTCCTCGGC
Statistics
Matches: 516, Mismatches: 96, Indels: 70
0.76 0.14 0.10
Matches are distributed among these distances:
154 14 0.03
155 10 0.02
156 60 0.12
157 137 0.27
158 64 0.12
160 3 0.01
161 102 0.20
162 4 0.01
163 40 0.08
164 5 0.01
165 48 0.09
166 10 0.02
167 1 0.00
168 3 0.01
169 15 0.03
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (157 bp):
TTTCAAGATCATATCCATTCTAACCATGTCCAACATGAAATTTACTTAATATCACCCACTGACCT
TAAAACTCCTTCTTCTTTATAAGTAATCACAAAATGGATATCATCTGGTTACAAAAATGACTGAC
ATTTGACAATAACCAAAGTAAGCTCAT
Found at i:8083001 original size:22 final size:21
Alignment explanation
Indices: 8082960--8083001 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
8082950 CCACCGATTC
*
8082960 AAAGTAAATAAAGTATTTAAA
1 AAAGTAAATAAAGTAATTAAA
8082981 AAAGTAAAATATAA-TAATTAA
1 AAAGT-AAATA-AAGTAATTAA
8083002 TTTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 11 0.61
23 2 0.11
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (21 bp):
AAAGTAAATAAAGTAATTAAA
Found at i:8084391 original size:225 final size:225
Alignment explanation
Indices: 8083947--8084415 Score: 556
Period size: 225 Copynumber: 2.1 Consensus size: 225
8083937 TAGTATCATG
* * * *
8083947 TTAACTCTTAAACCTTAAAAAATGTCACCAGAAATCACTTATACGTTTCCTTAAGAAAATTGTCA
1 TTAAATCTTAAACCCTAAAAAA-GTCACCAAAAATCACTTATACGTTTCCTTAAGAAAATCGTCA
* * * * ** *
8084012 ATATTTGATAATTTTATTCTAAATCCGAACATTTCAAATTTTCAAAATAACAAGTGATTTCTTAT
65 ACAATTAACAATTTTATTCTAAATCCGAACATTTCAAATTTTCAAAATAACAAACGATTTATTAT
*
8084077 TTGAACAACCATTGTTCATAGATTCATTAATCACCAAGTTAACATTTAACATATGACCTAGTATC
130 TCGAACAACCATTGTTCATAGATTCATTAATCACCAAGTTAACATTTAACATATGACCTAGTATC
8084142 AACCTGTCATTAAATATCGTTATGTTAA-TT
195 AACCTGTCATTAAATATCGTTATGTTAACTT
*
8084172 TCTAAATCTTAAACCCT-AAAAAGATCACCAAAAATCACTTATATGTTTCCTTAAGAAAA-CGCT
1 T-TAAATCTTAAACCCTAAAAAAG-TCACCAAAAATCACTTATACGTTTCCTTAAGAAAATCG-T
* * * * *
8084235 TAACAATTAACAATTTTATTCTAAATCCGAACTTTTTAGATTTTGAAAATAACAAACGATTTATT
63 CAACAATTAACAATTTTATTCTAAATCCGAACATTTCAAATTTTCAAAATAACAAACGATTTATT
* * * * *
8084300 ATTCGAACGAA-CATTGTTCATAGTTTCATTAATTATCATA-TTAACATTTAACTTATGACCTAT
128 ATTCGAAC-AACCATTGTTCATAGATTCATTAATCACCA-AGTTAACATTTAACATATGACCTAG
* * * *
8084363 TATCAATCCAT-T-GTTAAGTTTTGTTATGTTAACTT
191 TATCAA-CC-TGTCATTAAATATCGTTATGTTAACTT
* *
8084398 TTAAAACCTAAACCCTAA
1 TTAAATCTTAAACCCTAA
8084416 GGACACGTTT
Statistics
Matches: 206, Mismatches: 29, Indels: 17
0.82 0.12 0.07
Matches are distributed among these distances:
224 2 0.01
225 180 0.87
226 23 0.11
227 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (225 bp):
TTAAATCTTAAACCCTAAAAAAGTCACCAAAAATCACTTATACGTTTCCTTAAGAAAATCGTCAA
CAATTAACAATTTTATTCTAAATCCGAACATTTCAAATTTTCAAAATAACAAACGATTTATTATT
CGAACAACCATTGTTCATAGATTCATTAATCACCAAGTTAACATTTAACATATGACCTAGTATCA
ACCTGTCATTAAATATCGTTATGTTAACTT
Found at i:8084456 original size:16 final size:16
Alignment explanation
Indices: 8084435--8084486 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
8084425 TGGTTCGTTG
8084435 TAATGGAATAGAACTA
1 TAATGGAATAGAACTA
** *
8084451 TAATGGAATAGAGTTG
1 TAATGGAATAGAACTA
8084467 TAATGGAATA-AAGCTA
1 TAATGGAATAGAA-CTA
8084483 TAAT
1 TAAT
8084487 ACCTTTAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (16 bp):
TAATGGAATAGAACTA
Found at i:8084594 original size:58 final size:58
Alignment explanation
Indices: 8084525--8084690 Score: 198
Period size: 58 Copynumber: 2.9 Consensus size: 58
8084515 GATTATTGTT
8084525 ATTAAATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
1 ATTAAATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* * * *
8084583 ATTATATTTTAACATAATTATTATTAAATATAATTTAAT-AAAATAA-ATATAATTTA
1 ATTAAATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
* *
8084639 A-TAACATTTTTAATATAAA-AATTATTAAAATATGAA-TTAATAAAAATTATAA
1 ATTAA-A-TTTTAATA-AAATTATTATT-AAATAT-AATTTAATAAAAATAATAA
8084691 TATATAATAT
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
55 2 0.02
56 11 0.12
57 20 0.22
58 49 0.54
59 8 0.09
60 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (58 bp):
ATTAAATTTTAATAAAATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTA
Found at i:8084708 original size:25 final size:25
Alignment explanation
Indices: 8084653--8084702 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8084643 CATTTTTAAT
*
8084653 ATAAAAATTATTAAAATATGAATTA
1 ATAAAAATTATTAAAATATAAATTA
*
8084678 ATAAAAATTA-TAATATATAATATTA
1 ATAAAAATTATTAAAATATAA-ATTA
8084703 GAAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
ATAAAAATTATTAAAATATAAATTA
Found at i:8090911 original size:16 final size:16
Alignment explanation
Indices: 8090892--8090944 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
8090882 AAAAAATGTA
8090892 TAAAATTATTAAATAT
1 TAAAATTATTAAATAT
*
8090908 TAAAA-TAATATAATA-
1 TAAAATTATTA-AATAT
*
8090923 TAAATATTATTAAAAAT
1 TAAA-ATTATTAAATAT
8090940 TAAAA
1 TAAAA
8090945 AATAATATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 8 0.27
16 14 0.47
17 8 0.27
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAAATTATTAAATAT
Found at i:8090915 original size:32 final size:32
Alignment explanation
Indices: 8090890--8090949 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8090880 ATAAAAAATG
* *
8090890 TATAAA-ATTATTAAATATTAAAATAATATAA
1 TATAAATATTATTAAAAATTAAAATAATAAAA
8090921 TATAAATATTATTAAAAATTAAAA-AATAA
1 TATAAATATTATTAAAAATTAAAATAATAA
8090950 TATAGGCGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (32 bp):
TATAAATATTATTAAAAATTAAAATAATAAAA
Found at i:8090949 original size:29 final size:28
Alignment explanation
Indices: 8090881--8090953 Score: 85
Period size: 32 Copynumber: 2.5 Consensus size: 28
8090871 TTTCAATAAA
* *
8090881 TAAAAAAT-GTATAAAATTATTAAATAT
1 TAAAAAATAATATAAAATTATTAAAAAT
8090908 TAAAATAATATAATATAAATATTATTAAAAAT
1 T-AAA-AA-ATAATATAAA-ATTATTAAAAAT
8090940 TAAAAAATAATATA
1 TAAAAAATAATATA
8090954 GGCGAGCTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
27 1 0.03
28 3 0.08
29 10 0.26
30 4 0.10
31 9 0.23
32 12 0.31
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (28 bp):
TAAAAAATAATATAAAATTATTAAAAAT
Found at i:8092281 original size:29 final size:30
Alignment explanation
Indices: 8092228--8092286 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
8092218 GAATTGGATT
* *
8092228 AAATTAAAATTTCATGTATAAAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
*
8092258 AAATCAAAA-TTCATATATACAATTGCACA
1 AAATCAAAATTTCATATATAAAATTGCACA
8092287 TTAAACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATCAAAATTTCATATATAAAATTGCACA
Found at i:8101606 original size:29 final size:30
Alignment explanation
Indices: 8101574--8101883 Score: 107
Period size: 29 Copynumber: 10.2 Consensus size: 30
8101564 AAAACGAGAC
*
8101574 TTTTGGAT-ACTCGGGGGT-AAAATGGTAAT
1 TTTTGGATAAATCGGGGGTAAAAATGG-AAT
* *
8101603 TTTTGGTTAAATCGGGGTTAAAAATGGAATT
1 TTTTGGATAAATCGGGGGTAAAAATGGAA-T
** *
8101634 TGGAAACTTTGGCGAAATCGGGGCTAAAAATGGAA-
1 T------TTTGGATAAATCGGGGGTAAAAATGGAAT
* *
8101669 TTTTGGA-AAGTTCGGGGGGT-AAAATGGTGAT
1 TTTTGGATAA-ATC-GGGGGTAAAAATGG-AAT
* * *
8101700 TTTTGG-TGAAACCGGGGTTAAAGATAGG-A-
1 TTTTGGAT-AAATCGGGGGTAAAAAT-GGAAT
* *
8101729 TTTTGGA-AAGTTCGGGGGT-AAAATGATAAT
1 TTTTGGATAA-ATCGGGGGTAAAAATG-GAAT
* * *
8101759 TTTT-AATGAAACCGGGGTTAAAAATGGAA-
1 TTTTGGAT-AAATCGGGGGTAAAAATGGAAT
* **
8101788 TTTTGGA-AAGTTTAGGGGT-AAAATGGTAAT
1 TTTTGGATAA-ATCGGGGGTAAAAATGG-AAT
* *
8101818 TTTTGG-TGAAACCGGGGTTAAAAATGGAA-
1 TTTTGGAT-AAATCGGGGGTAAAAATGGAAT
*
8101847 TTTTGGA-AAGTTCGGGGGT-AAAATGGTAAT
1 TTTTGGATAA-ATCGGGGGTAAAAATGG-AAT
8101877 TTTTGGA
1 TTTTGGA
8101884 CAGTCCAGGG
Statistics
Matches: 207, Mismatches: 38, Indels: 71
0.66 0.12 0.22
Matches are distributed among these distances:
27 1 0.00
28 26 0.13
29 59 0.29
30 54 0.26
31 37 0.18
32 4 0.02
35 1 0.00
37 25 0.12
ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32
Consensus pattern (30 bp):
TTTTGGATAAATCGGGGGTAAAAATGGAAT
Found at i:8101618 original size:30 final size:27
Alignment explanation
Indices: 8101574--8101634 Score: 59
Period size: 30 Copynumber: 2.1 Consensus size: 27
8101564 AAAACGAGAC
*
8101574 TTTTGGATACTCGGGGGTAAAATGGTAAT
1 TTTTGGA-AATCGGGGGTAAAATGG-AAT
*
8101603 TTTTGGTTAAATCGGGGTTAAAAATGGAAT
1 TTTTGG--AAATCGGGGGT-AAAATGGAAT
8101633 TT
1 TT
8101635 GGAAACTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
29 6 0.22
30 13 0.48
31 8 0.30
ACGTcount: A:0.30, C:0.05, G:0.28, T:0.38
Consensus pattern (27 bp):
TTTTGGAAATCGGGGGTAAAATGGAAT
Found at i:8101770 original size:59 final size:59
Alignment explanation
Indices: 8101641--8101882 Score: 369
Period size: 59 Copynumber: 4.1 Consensus size: 59
8101631 ATTTGGAAAC
* * * *
8101641 TTTGGCGAAATCGGGGCTAAAAATGGAATTTTGGAAAGTTCGGGGGGTAAAATGGTGATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTC-GGGGGTAAAATGGTAATT
* *
8101701 TTTGGTGAAACCGGGGTTAAAGATAGG-ATTTTGGAAAGTTCGGGGGTAAAATGATAATT
1 TTTGGTGAAACCGGGGTTAAAAAT-GGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATT
** **
8101760 TTTAATGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTTAGGGGTAAAATGGTAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATT
8101819 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATT
1 TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATT
8101878 TTTGG
1 TTTGG
8101883 ACAGTCCAGG
Statistics
Matches: 164, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
58 2 0.01
59 126 0.77
60 34 0.21
61 2 0.01
ACGTcount: A:0.32, C:0.05, G:0.32, T:0.31
Consensus pattern (59 bp):
TTTGGTGAAACCGGGGTTAAAAATGGAATTTTGGAAAGTTCGGGGGTAAAATGGTAATT
Found at i:8103743 original size:6 final size:6
Alignment explanation
Indices: 8103734--8103805 Score: 64
Period size: 6 Copynumber: 12.8 Consensus size: 6
8103724 GTTTGAACTT
* *
8103734 TTTAAA TTTAAA -TTAAA TTCAAA TTCAAA -TTAAA -TTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
8103779 -ATAAA TTTAAA ATTAAA -ATAAA TTTAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA
8103806 TTTCAAAATG
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
5 22 0.40
6 33 0.60
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:8103751 original size:11 final size:11
Alignment explanation
Indices: 8103735--8103808 Score: 80
Period size: 11 Copynumber: 6.7 Consensus size: 11
8103725 TTTGAACTTT
8103735 TTAAATTTAAA
1 TTAAATTTAAA
*
8103746 TTAAATTCAAA
1 TTAAATTTAAA
8103757 TTCAAA-TTAAA
1 TT-AAATTTAAA
8103768 TTAAATTTAAA
1 TTAAATTTAAA
*
8103779 ATAAATTTAAAA
1 TTAAATTT-AAA
*
8103791 TTAAA-ATAAA
1 TTAAATTTAAA
*
8103801 TTTAATTT
1 TTAAATTT
8103809 CAAAATGATT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
10 10 0.19
11 32 0.62
12 10 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:8103763 original size:17 final size:16
Alignment explanation
Indices: 8103735--8103814 Score: 72
Period size: 17 Copynumber: 4.8 Consensus size: 16
8103725 TTTGAACTTT
* *
8103735 TTAAATTTAAATTAAA
1 TTAAATTCAAAATAAA
*
8103751 TTCAAATTCAAATTAAA
1 TT-AAATTCAAAATAAA
*
8103768 TTAAATTTAAAATAAA
1 TTAAATTCAAAATAAA
8103784 TTTAAAATT-AAAATAAA
1 -TT-AAATTCAAAATAAA
*
8103801 TTTAATTTCAAAAT
1 -TTAAATTCAAAAT
8103815 GATTTGGACC
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
16 18 0.32
17 33 0.59
18 5 0.09
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAATTCAAAATAAA
Found at i:8109894 original size:16 final size:15
Alignment explanation
Indices: 8109873--8109902 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8109863 TTTAAAAGTA
8109873 AAAACTAAAATAAAAT
1 AAAACTAAAA-AAAAT
8109889 AAAACTAAAAAAAA
1 AAAACTAAAAAAAA
8109903 GTGAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (15 bp):
AAAACTAAAAAAAAT
Found at i:8117105 original size:52 final size:52
Alignment explanation
Indices: 8116915--8117093 Score: 286
Period size: 52 Copynumber: 3.4 Consensus size: 52
8116905 GACCTTTTGT
* * * *
8116915 TCCGTAAAAGAATTCATATACTCACGATAACACTTAGTCATTGGCCCTCATAA
1 TCCGT-AAAGAATTCATATACTCACGATGACACTTCGTCATCGGACCTCATAA
*
8116968 TCCGTAAAGTATTCATATACTCACGATGACACTTCGTCATCGGACCTCATAA
1 TCCGTAAAGAATTCATATACTCACGATGACACTTCGTCATCGGACCTCATAA
* *
8117020 TCCGTAAAGGATTCATATACTCACGATGACACTTCGTTATCGGACCTCATAA
1 TCCGTAAAGAATTCATATACTCACGATGACACTTCGTCATCGGACCTCATAA
8117072 TCCGTAAAGAATTCATATACTC
1 TCCGTAAAGAATTCATATACTC
8117094 TCAACGACAC
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
52 113 0.96
53 5 0.04
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (52 bp):
TCCGTAAAGAATTCATATACTCACGATGACACTTCGTCATCGGACCTCATAA
Found at i:8129095 original size:21 final size:23
Alignment explanation
Indices: 8129042--8129095 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
8129032 CTTTTTAGAC
*
8129042 CCTGGAATATCCTCTGTTTTCTT
1 CCTGGAAAATCCTCTGTTTTCTT
**
8129065 TGTCGGAAAATCCTCTG-TTT-TT
1 CCT-GGAAAATCCTCTGTTTTCTT
8129087 CCTGGAAAA
1 CCTGGAAAA
8129096 CCTTTTCTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 6 0.24
22 3 0.12
23 4 0.16
24 12 0.48
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.41
Consensus pattern (23 bp):
CCTGGAAAATCCTCTGTTTTCTT
Found at i:8133316 original size:25 final size:24
Alignment explanation
Indices: 8133268--8133325 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
8133258 TTAATGTTTA
*
8133268 AATTTTTTTGTTAATTTAATTATT
1 AATTTTTTAGTTAATTTAATTATT
* *
8133292 ATTATTTTTAGTTAAATTTGA-TATT
1 AAT-TTTTTAGTT-AATTTAATTATT
8133317 AATTTTTTA
1 AATTTTTTA
8133326 AAAAGAAGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 8 0.29
25 14 0.50
26 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (24 bp):
AATTTTTTAGTTAATTTAATTATT
Found at i:8133611 original size:17 final size:17
Alignment explanation
Indices: 8133589--8133625 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
8133579 AATTTAACGT
8133589 TTTACTCAGTATCTAAA
1 TTTACTCAGTATCTAAA
8133606 TTTACTCAGTATCTAAA
1 TTTACTCAGTATCTAAA
8133623 TTT
1 TTT
8133626 CTGTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (17 bp):
TTTACTCAGTATCTAAA
Found at i:8133962 original size:59 final size:60
Alignment explanation
Indices: 8133885--8134014 Score: 226
Period size: 59 Copynumber: 2.2 Consensus size: 60
8133875 AAACACACAC
* *
8133885 AAAATCCATATATATTTTTTGTAATAAAAGAGGCATTATAATGCCTTTATTTCATCTCAA
1 AAAATCCATATATATTTTTTATAATAAAAGAGGCATTACAATGCCTTTATTTCATCTCAA
*
8133945 AAAATCCATAT-TTTTTTTTATAATAAAAGAGGCATTACAATGCCTTTATTTCATCTCAA
1 AAAATCCATATATATTTTTTATAATAAAAGAGGCATTACAATGCCTTTATTTCATCTCAA
8134004 AAAATCCATAT
1 AAAATCCATAT
8134015 CTTTATGATA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
59 56 0.84
60 11 0.16
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (60 bp):
AAAATCCATATATATTTTTTATAATAAAAGAGGCATTACAATGCCTTTATTTCATCTCAA
Found at i:8134385 original size:19 final size:20
Alignment explanation
Indices: 8134348--8134385 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8134338 AACATCTAAT
* *
8134348 AAATCATTATAATATAATTA
1 AAATCATTATAAAAAAATTA
8134368 AAATCA-TATAAAAAAATT
1 AAATCATTATAAAAAAATT
8134386 TGAAAACCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATCATTATAAAAAAATTA
Found at i:8139540 original size:39 final size:39
Alignment explanation
Indices: 8139497--8139615 Score: 238
Period size: 39 Copynumber: 3.1 Consensus size: 39
8139487 AGATAAGGTA
8139497 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
1 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
8139536 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
1 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
8139575 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
1 ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
8139614 AT
1 AT
8139616 GGGTAAGATT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.26, C:0.08, G:0.28, T:0.39
Consensus pattern (39 bp):
ATTGTGGGTACTTGAGTCTTGATTAAATAGAGAGCTGTT
Found at i:8148052 original size:19 final size:19
Alignment explanation
Indices: 8148030--8148067 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8148020 AATGTTGAAT
8148030 GAGAAAAAGAAAAGAAAAA
1 GAGAAAAAGAAAAGAAAAA
*
8148049 GAGAAAGAGAAAAGAAAAA
1 GAGAAAAAGAAAAGAAAAA
8148068 AAAGAAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (19 bp):
GAGAAAAAGAAAAGAAAAA
Found at i:8148061 original size:13 final size:11
Alignment explanation
Indices: 8148031--8148074 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
8148021 ATGTTGAATG
8148031 AGAAAAAGAAA
1 AGAAAAAGAAA
8148042 AGAAAAAGAGAA
1 AGAAAAAGA-AA
8148054 AGAGAAAAG-AA
1 AGA-AAAAGAAA
8148065 A-AAAAAGAAA
1 AGAAAAAGAAA
8148075 TATTGCTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 12 0.40
12 5 0.17
13 5 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AGAAAAAGAAA
Found at i:8150662 original size:16 final size:16
Alignment explanation
Indices: 8150643--8150687 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
8150633 AAAAAATTAT
*
8150643 ATTTTCCATCCTTCTA
1 ATTTTCCATCCTTCCA
8150659 ATTTTCCA-CCTCTCCA
1 ATTTTCCATCCT-TCCA
*
8150675 ATTTTCCCTCCTT
1 ATTTTCCATCCTT
8150688 TCCACCTCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 3 0.12
16 19 0.76
17 3 0.12
ACGTcount: A:0.16, C:0.38, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTTCCATCCTTCCA
Found at i:8150689 original size:25 final size:25
Alignment explanation
Indices: 8150661--8150714 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
8150651 TCCTTCTAAT
8150661 TTTCCACCTCTCCAATTTTCCCTCC
1 TTTCCACCTCTCCAATTTTCCCTCC
8150686 TTTCCACCTCTCCAATTTTCCCTCC
1 TTTCCACCTCTCCAATTTTCCCTCC
8150711 TTTC
1 TTTC
8150715 AATTTTCTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.11, C:0.46, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTCCACCTCTCCAATTTTCCCTCC
Found at i:8157329 original size:21 final size:20
Alignment explanation
Indices: 8157304--8157364 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
8157294 ACCTATATAA
*
8157304 AATAATATAAAATATTATATT
1 AATAAGATAAAA-ATTATATT
* *
8157325 AATAAGATTAAAATTATA-A
1 AATAAGATAAAAATTATATT
*
8157344 AATAAG-TAAAATTTATTATT
1 AATAAGATAAAAATTA-TATT
8157364 A
1 A
8157365 TCAAACATTA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
18 7 0.22
19 8 0.25
20 7 0.22
21 10 0.31
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
AATAAGATAAAAATTATATT
Found at i:8159168 original size:72 final size:72
Alignment explanation
Indices: 8159084--8159228 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 72
8159074 CTTTCGAAAG
8159084 CAAGCAAGGAACAAACTAACTACAATATGCAAGCTTGATTTTATTCCTCGAGACATTTCAATCTC
1 CAAGCAAGGAACAAACTAACTACAATATGCAAGCTTGATTTTATTCCTCGAGACATTTCAATCTC
8159149 AGACCAC
66 AGACCAC
*
8159156 CAAGCAAGGAACAAACTAACTGCAATATGCAAGCTTGATTTTATTCCTCGAGACATTTCAATCTC
1 CAAGCAAGGAACAAACTAACTACAATATGCAAGCTTGATTTTATTCCTCGAGACATTTCAATCTC
8159221 AGACCAC
66 AGACCAC
8159228 C
1 C
8159229 TTCAACCTTG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.37, C:0.26, G:0.13, T:0.25
Consensus pattern (72 bp):
CAAGCAAGGAACAAACTAACTACAATATGCAAGCTTGATTTTATTCCTCGAGACATTTCAATCTC
AGACCAC
Found at i:8172237 original size:18 final size:18
Alignment explanation
Indices: 8172216--8172255 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8172206 TTAGTAATGT
*
8172216 TTTTTATTTCAAAAATAC
1 TTTTTATTCCAAAAATAC
* *
8172234 TTTTTGTTCCAAAAATGC
1 TTTTTATTCCAAAAATAC
8172252 TTTT
1 TTTT
8172256 GAGAAGTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTTTATTCCAAAAATAC
Found at i:8177249 original size:17 final size:17
Alignment explanation
Indices: 8177227--8177261 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8177217 TGTTGTTTTA
8177227 ATAAAAATGTATTAATG
1 ATAAAAATGTATTAATG
8177244 ATAAAAATGTATTAATG
1 ATAAAAATGTATTAATG
8177261 A
1 A
8177262 ACATCTTGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (17 bp):
ATAAAAATGTATTAATG
Found at i:8178445 original size:142 final size:142
Alignment explanation
Indices: 8178189--8178460 Score: 397
Period size: 142 Copynumber: 1.9 Consensus size: 142
8178179 TTATTCCTAT
* * * **
8178189 TATCAGTTTTCATTCATATATCTTCTGTTCCATATAATAATTGAGTCTTGGGGGAGATGGTAGGT
1 TATCAATTTTCATTCATATATCTTCTGTTCCATATAATAATCGAGTCTCGAAGGAGATGGTAGGT
* * * **
8178254 GATGAGAATGATAGACTGTTGTTCCCTTTTAAAATGGTTTTGTTTTAGATGCCCTGGTTTTCCTC
66 GATGAGAATGAAAGACTGTCGTTCCCTTTTAAAATGGTTTTGCTTTAGATGCCCAAGTTTTCCTC
8178319 ATATTTGTTTTG
131 ATATTTGTTTTG
8178331 TATCAATTTTCATTCATATATCTTCTGTTTCC-TA-ACATAATCGAGTCTCGAAGGAGATGGTAG
1 TATCAATTTTCATTCATATATCTTCTG-TTCCATATA-ATAATCGAGTCTCGAAGGAGATGGTAG
*
8178394 GTGATGAGAGTGAAAGACTGTCGTTCCCTTTT-AAATCGGTTTTGCTTTAGATGCCCAAGTTTTC
64 GTGATGAGAATGAAAGACTGTCGTTCCCTTTTAAAAT-GGTTTTGCTTTAGATGCCCAAGTTTTC
8178458 CTC
128 CTC
8178461 TTGTCTACAT
Statistics
Matches: 116, Mismatches: 11, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
141 5 0.04
142 107 0.92
143 4 0.03
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.41
Consensus pattern (142 bp):
TATCAATTTTCATTCATATATCTTCTGTTCCATATAATAATCGAGTCTCGAAGGAGATGGTAGGT
GATGAGAATGAAAGACTGTCGTTCCCTTTTAAAATGGTTTTGCTTTAGATGCCCAAGTTTTCCTC
ATATTTGTTTTG
Found at i:8188215 original size:4 final size:4
Alignment explanation
Indices: 8188206--8188240 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
8188196 AAAATTCAAA
8188206 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
8188241 ATTGCATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8188259 original size:52 final size:52
Alignment explanation
Indices: 8188148--8188259 Score: 118
Period size: 52 Copynumber: 2.2 Consensus size: 52
8188138 CAATAATCTT
* * * *
8188148 TTTAAAAAATAAAAAAAGTTAATAAATTAAAAACACATAAAATTATACAAAA
1 TTTAAAAAATAAAAAAAGTAAATAAATAAAAAACAAATAAAATTACACAAAA
* * * * * *
8188200 TTCAAAAAATAAATAAA-TAAATAAATAAATAAATAAATAAAATTGCATAAAC
1 TTTAAAAAATAAAAAAAGTAAATAAATAAA-AAACAAATAAAATTACACAAAA
8188252 TTTAAAAA
1 TTTAAAAA
8188260 TTAATATGCT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
51 10 0.21
52 38 0.79
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (52 bp):
TTTAAAAAATAAAAAAAGTAAATAAATAAAAAACAAATAAAATTACACAAAA
Found at i:8198395 original size:24 final size:24
Alignment explanation
Indices: 8198368--8198413 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
8198358 GTGTCAAAAT
8198368 CTGTTAATTTAGCGGCGCTTTTTC
1 CTGTTAATTTAGCGGCGCTTTTTC
8198392 CTGTTAATTTAGCGGCGCTTTT
1 CTGTTAATTTAGCGGCGCTTTT
8198414 CCCAAAAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.46
Consensus pattern (24 bp):
CTGTTAATTTAGCGGCGCTTTTTC
Found at i:8201639 original size:23 final size:23
Alignment explanation
Indices: 8201621--8201680 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
8201611 ATAAATTTTC
*
8201621 AAATTTAAAAAATGAAAATATTA
1 AAATTTAAAAAATAAAAATATTA
*
8201644 AAATTTTAAAAATAAAAATA--A
1 AAATTTAAAAAATAAAAATATTA
* *
8201665 AAATATAAAAATTAAA
1 AAATTTAAAAAATAAA
8201681 TTTTAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 14 0.44
23 18 0.56
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (23 bp):
AAATTTAAAAAATAAAAATATTA
Found at i:8203448 original size:28 final size:27
Alignment explanation
Indices: 8203430--8203503 Score: 130
Period size: 28 Copynumber: 2.7 Consensus size: 27
8203420 GGATACCCAA
8203430 GGGCAAAATGGTAATTTTGGACGTACGG
1 GGGCAAAATGGTAATTTTGGAC-TACGG
8203458 GGGCAAAATGGTAATTTTGGACGTACGG
1 GGGCAAAATGGTAATTTTGGAC-TACGG
8203486 GGGCAAAATGGTAATTTT
1 GGGCAAAATGGTAATTTT
8203504 TGGTTAAACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.27
Consensus pattern (27 bp):
GGGCAAAATGGTAATTTTGGACTACGG
Found at i:8203639 original size:61 final size:59
Alignment explanation
Indices: 8203540--8203723 Score: 183
Period size: 59 Copynumber: 3.1 Consensus size: 59
8203530 TTTTGGAAAC
* * *
8203540 TTTGGCGAAATCGGGGCTAAAAATGGAATTTTGGAAAGTTCGGGGGGGTAAAATGGTGATT
1 TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGAAAAGTTC--GGGGGTAAAATGGTAATT
* * *
8203601 TTTGGTGAAATCGGGGTTAAAGATAGG-ATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
1 TTTGGCGAAATCGGGGCTAAAAAT-GGAATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
* * * * * * ***
8203660 TTTGACAAAACCGGGGTTAAAAACGGAATTT-TAGAAAGTTTAAGGGTAAAATGGTAATT
1 TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGA-AAAGTTCGGGGGTAAAATGGTAATT
8203719 TTTGG
1 TTTGG
8203724 ACAGTCTAGG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
58 3 0.03
59 65 0.63
61 33 0.32
62 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.30
Consensus pattern (59 bp):
TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
Found at i:8203969 original size:162 final size:162
Alignment explanation
Indices: 8203794--8204131 Score: 615
Period size: 162 Copynumber: 2.1 Consensus size: 162
8203784 GGTACCTAGA
8203794 AGTCAAAGGACTAATTTATAAATCTTGAAAAA-TTCTCGGGCCAATTTTGTAATTAAATAAAAGT
1 AGTCAAAGGACTAATTTATAAATCTT-AAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGT
* *
8203858 TGATTTAAGGATTAAATTAAAATAAATTAAAAATGACAGGGACTAGATACATAAATAAGCCAAAA
65 TGATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAGACAAAA
8203923 AGTGACACGTGGCAGCCTCTGGTGCAATCAAAC
130 AGTGACACGTGGCAGCCTCTGGTGCAATCAAAC
*
8203956 AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTTGGGCCAATTTTGTAATTAAATAAAAGTT
1 AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGTT
8204021 GATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAGACAAAAA
66 GATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAGACAAAAA
* *
8204086 GTGACACGTGGCAGCCTCTGGTGTAGTCAAAC
131 GTGACACGTGGCAGCCTCTGGTGCAATCAAAC
8204118 AGTCAAAGGACTAA
1 AGTCAAAGGACTAA
8204132 ATTGAAAAGT
Statistics
Matches: 170, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
161 5 0.03
162 165 0.97
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (162 bp):
AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGTT
GATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAGATACATAAATAAGACAAAAA
GTGACACGTGGCAGCCTCTGGTGCAATCAAAC
Found at i:8205759 original size:17 final size:17
Alignment explanation
Indices: 8205726--8205811 Score: 120
Period size: 17 Copynumber: 5.1 Consensus size: 17
8205716 ATATTTAAAC
*
8205726 ATTTAAATTCAAAATAA
1 ATTTAAATTTAAAATAA
* *
8205743 ATTCAAATTTAACATAA
1 ATTTAAATTTAAAATAA
*
8205760 ATTTAAATTCT-AAATGA
1 ATTTAAATT-TAAAATAA
8205777 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
8205794 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
8205811 A
1 A
8205812 CTAAGGTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
16 1 0.02
17 58 0.97
18 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:8206272 original size:76 final size:76
Alignment explanation
Indices: 8206100--8206458 Score: 595
Period size: 76 Copynumber: 4.8 Consensus size: 76
8206090 AGGCTTCATC
* * *
8206100 TTGCTCTCACTTCAATTTCAGAGAGATAAAGACTTGCTATCCAACTTTACTTCAATTTC-----G
1 TTGCTCTTACTTCAATTTC--AGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGG
8206160 ATAGGAAATGATC-
64 ATAGGAAATGA-CG
8206173 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
* *
8206238 AGGAGATGATG
66 AGGAAATGACG
8206249 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
8206314 AGGAAATGACG
66 AGGAAATGACG
*
8206325 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAGTTTCAAGAGGAT
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
8206390 AGGAAATGACG
66 AGGAAATGACG
8206401 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCA
1 TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCA
8206459 GAGATAAAGA
Statistics
Matches: 271, Mismatches: 9, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
71 36 0.13
73 18 0.07
76 217 0.80
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (76 bp):
TTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT
AGGAAATGACG
Found at i:8206488 original size:76 final size:73
Alignment explanation
Indices: 8206446--8207614 Score: 1879
Period size: 76 Copynumber: 15.4 Consensus size: 73
8206436 TATCCAACTC
8206446 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8206511 GACGTTGCTCT
63 GACGTTGCTCT
8206522 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
*
8206587 GATGTTGCTCT
63 GACGTTGCTCT
8206598 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8206663 GACGTTGCTCT
63 GACGTTGCTCT
8206674 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
8206739 GACGTTGCTCT
63 GACGTTGCTCT
8206750 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8206815 GACGTTGCTCT
63 GACGTTGCTCT
8206826 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
*
8206891 GATGTTGCTCT
63 GACGTTGCTCT
8206902 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
*
8206967 GATGTTGCTCT
63 GACGTTGCTCT
8206978 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8207043 GACGTTGCTCT
63 GACGTTGCTCT
8207054 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
8207119 GACGTTGCTCT
63 GACGTTGCTCT
8207130 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8207195 GACGTTGCTCT
63 GACGTTGCTCT
8207206 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
*
8207271 GATGTTGCTCT
63 GACGTTGCTCT
8207282 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8207347 GACGTTGCTCT
63 GACGTTGCTCT
8207358 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAAT
8207423 GACGTTGCTCT
63 GACGTTGCTCT
8207434 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
8207499 GACGTTGCTCT
63 GACGTTGCTCT
8207510 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-AT
*
8207575 GATGTTGCTCT
63 GACGTTGCTCT
*
8207586 TACTTCAATTTCAAAGATAAAGACTTGTT
1 TACTTCAATTTCAGAGATAAAGACTTGTT
8207615 CAGAGATAAA
Statistics
Matches: 1049, Mismatches: 8, Indels: 72
0.93 0.01 0.06
Matches are distributed among these distances:
73 6 0.01
75 6 0.01
76 1025 0.98
77 6 0.01
79 6 0.01
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (73 bp):
TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAAATGAC
GTTGCTCT
Found at i:8206566 original size:228 final size:223
Alignment explanation
Indices: 8206408--8208057 Score: 2228
Period size: 228 Copynumber: 7.1 Consensus size: 223
8206398 ACGTTGCTCT
* *
8206408 TACTTCAATTTC-AGA-GATAAA-GACTTGTTATCCAACTCTACTTCAATTTCAGAGATAAAGAC
1 TACTTCAATTTCAAGAGGATAAATGAC-TGTT-TGC-TCT-TACTTCAATTTCAGAGATAAAGAC
*
8206470 TTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCA
62 TTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCA
8206535 GAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGA-TGTTGCTCTT
127 GAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAA-GACTGTTGCTCTT
8206599 ACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
188 ACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8206636 TACTTCAATTTCAAGAGGATAGGAGATGAC-G-TTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TACTTCAATTTCAAGAGGATA--A-ATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACT
8206699 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
63 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
8206764 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGAC-GTTGCTCTTA
128 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-A-GACTGTTGCTCTTA
8206828 CTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
189 CTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8206864 TACTTCAATTTCAAGAGGATAGGAAATGA-TG-TTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TACTTCAATTTCAAGAGGAT---AAATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACT
*
8206927 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGATGTTGCTCTTACTTCAATTTCAG
63 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
8206992 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGAC-GTTGCTCTTA
128 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-A-GACTGTTGCTCTTA
8207056 CTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
189 CTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8207092 TACTTCAATTTCAAGAGGATAGGAAATGAC-G-TTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TACTTCAATTTCAAGAGGAT---AAATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACT
*
8207155 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAG
63 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
8207220 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGA-TGTTGCTCTTA
128 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---AAA-GACTGTTGCTCTTA
8207284 CTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
189 CTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8207320 TACTTCAATTTCAAGAGGATAGGAGATGAC-G-TTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TACTTCAATTTCAAGAGGATA--A-ATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACT
8207383 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
63 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAG
8207448 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGAC-GTTGCTCTTA
128 AGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATA--A-A-GACTGTTGCTCTTA
8207512 CTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
189 CTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8207548 TACTTCAATTTCAAGAGGATAGGAGATGA-TG-TTGCTCTTACTTCAATTTCAAAGATAAAGACT
1 TACTTCAATTTCAAGAGGATA--A-ATGACTGTTTGCTCTTA---C---TTC--------A-A--
*
8207611 TGTTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTG
46 T-TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTG
8207676 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGG
110 CTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---
8207741 AAATGAC-GTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
172 AAA-GACTGTTGCTCTTACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8207794 TACTTCAATTTCAAGAGGATAGGAGATGAC-G-TTGCTCTTACTTCAATTTCAGAGATAAAGACT
1 TACTTCAATTTCAAGAGGATA--A-ATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACT
* *
8207857 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAA
63 TGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTA---C---TTC--
*
8207922 AGATAAAGACTTGTTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGG
120 ------A-A--T-TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGAT---
8207987 AAATGAC-GTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTC
172 AAA-GACTGTTGCTCTTACTTCAATTTCAGAGATAAAGAC-TGTTATCCAACTC
8208040 TACTTCAATTTCAAGAGG
1 TACTTCAATTTCAAGAGG
8208058 GTAGGAAATG
Statistics
Matches: 1343, Mismatches: 12, Indels: 116
0.91 0.01 0.08
Matches are distributed among these distances:
225 3 0.00
227 3 0.00
228 956 0.71
229 8 0.01
230 6 0.00
231 6 0.00
232 3 0.00
233 1 0.00
234 9 0.01
240 3 0.00
242 2 0.00
243 3 0.00
245 2 0.00
246 336 0.25
247 1 0.00
249 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (223 bp):
TACTTCAATTTCAAGAGGATAAATGACTGTTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGT
TATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAGAGA
TAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAAAGACTGTTGCTCTTACTTCAAT
TTCAGAGATAAAGACTGTTATCCAACTC
Found at i:8207611 original size:152 final size:152
Alignment explanation
Indices: 8206446--8207614 Score: 2221
Period size: 152 Copynumber: 7.7 Consensus size: 152
8206436 TATCCAACTC
*
8206446 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
8206511 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
* *
8206576 GGATAGGAAATGATGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
*
8206598 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
8206663 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
*
8206728 GGATAGGAAATGACGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
*
8206750 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
8206815 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
* *
8206880 GGATAGGAAATGATGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
8206902 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
*
8206967 GATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
8207032 GGATAGGAGATGACGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
8207054 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
8207119 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
8207184 GGATAGGAGATGACGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
8207206 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
*
8207271 GATGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
8207336 GGATAGGAGATGACGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
8207358 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
8207423 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
8207488 GGATAGGAGATGACGTTGCTCT
131 GGATAGGAGATGACGTTGCTCT
*
8207510 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGAT
1 TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
* *
8207575 GATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTGTT
66 GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTT
8207615 CAGAGATAAA
Statistics
Matches: 1005, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 1005 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (152 bp):
TACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAAT
GACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGA
GGATAGGAGATGACGTTGCTCT
Found at i:8207621 original size:18 final size:18
Alignment explanation
Indices: 8207595--8207632 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8207585 TTACTTCAAT
8207595 TTCAAAGATAAAGACTTG
1 TTCAAAGATAAAGACTTG
*
8207613 TTCAGAGATAAAGACTTG
1 TTCAAAGATAAAGACTTG
8207631 TT
1 TT
8207633 ATCCAACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (18 bp):
TTCAAAGATAAAGACTTG
Found at i:8207680 original size:94 final size:94
Alignment explanation
Indices: 8207519--8207708 Score: 344
Period size: 94 Copynumber: 2.0 Consensus size: 94
8207509 TTACTTCAAT
* * *
8207519 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
8207584 CTTACTTCAATTTCAAAGATAAAGACTTG
66 CTTACTTCAATTTCAAAGATAAAGACTTG
8207613 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
*
8207678 CTTACTTCAATTTCAGAGATAAAGACTTG
66 CTTACTTCAATTTCAAAGATAAAGACTTG
8207707 TT
1 TT
8207709 ATCCAACTCT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (94 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
CTTACTTCAATTTCAAAGATAAAGACTTG
Found at i:8207722 original size:38 final size:38
Alignment explanation
Indices: 8207613--8207882 Score: 189
Period size: 38 Copynumber: 7.1 Consensus size: 38
8207603 TAAAGACTTG
*
8207613 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
* *
8207651 TTCAAGAGGATAGGAAATGAC--G-T-TGC-TCT-TACTTCAAT
1 TTC-AGA-GAT---AAA-GACTTGTTATCCAACTCTACTTCAAT
8207689 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
* *
8207727 TTCAAGAGGATAGGAAATGAC--G-T-TGC-TCT-TACTTCAAT
1 TTC-AGA-GAT---AAA-GACTTGTTATCCAACTCTACTTCAAT
8207765 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
* *
8207803 TTCAAGAGGATAGGAGATGAC--G-T-TGC-TCT-TACTTCAAT
1 TTC-AGA-GATA--A-A-GACTTGTTATCCAACTCTACTTCAAT
8207841 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
8207879 TTCA
1 TTCA
8207883 AGAGGATAGG
Statistics
Matches: 183, Mismatches: 13, Indels: 72
0.68 0.05 0.27
Matches are distributed among these distances:
32 9 0.05
33 7 0.04
34 4 0.02
35 3 0.02
36 16 0.09
37 15 0.08
38 75 0.41
39 15 0.08
40 16 0.09
41 3 0.02
42 4 0.02
43 7 0.04
44 9 0.05
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (38 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
Found at i:8207739 original size:76 final size:76
Alignment explanation
Indices: 8207613--8207936 Score: 603
Period size: 76 Copynumber: 4.3 Consensus size: 76
8207603 TAAAGACTTG
*
8207613 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
8207678 CTTACTTCAAT
66 CTTACTTCAAT
8207689 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
8207754 CTTACTTCAAT
66 CTTACTTCAAT
*
8207765 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
8207830 CTTACTTCAAT
66 CTTACTTCAAT
* *
8207841 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
8207906 CTTACTTCAAT
66 CTTACTTCAAT
*
8207917 TTCAAAGATAAAGACTTGTT
1 TTCAGAGATAAAGACTTGTT
8207937 CAGAGATAAA
Statistics
Matches: 244, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 244 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (76 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
CTTACTTCAAT
Found at i:8207801 original size:246 final size:228
Alignment explanation
Indices: 8207613--8208073 Score: 697
Period size: 246 Copynumber: 1.9 Consensus size: 228
8207603 TAAAGACTTG
*
8207613 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
8207678 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
66 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
8207743 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
131 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
*
8207808 GAGGATAGGAGATGACGTTGCTCTTACTTCAAT
196 GAGGATAGGAGATGATGTTGCTCTTACTTCAAT
* *
8207841 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
*
8207906 CTTACTTCAATTTCAAAGATAAAGACTTGTTCAGAGATAAAGACTTGTTATCCAACTCTACTTAA
66 CTTA---C---TTC--------A-A--T-TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCA
8207971 ATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCA
113 ATTTCAAGAGGATAGGAAATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCA
* *
8208036 ACTCTACTTCAATTTCAAGAGGGTAGGAAATGATGTTG
178 ACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTG
8208074 GATTGATGTG
Statistics
Matches: 208, Mismatches: 7, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
228 66 0.32
231 1 0.00
234 3 0.01
242 1 0.00
243 1 0.00
245 1 0.00
246 135 0.65
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (228 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCT
CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
GAGGATAGGAGATGATGTTGCTCTTACTTCAAT
Found at i:8207912 original size:38 final size:38
Alignment explanation
Indices: 8207642--8207921 Score: 185
Period size: 38 Copynumber: 7.4 Consensus size: 38
8207632 TATCCAACTC
* * *
8207642 TACTTAAATTTCAAGAGGATAGGAAATGACGTTGCTCT
1 TACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
* * *
8207680 TACTTCAATTTC-AGA-GATA-AAGACT--TGTTATCCAACT
1 TACTTCAATTTCAAGAGGATAGGAGA-TGATG-T-TGC-TCT
* *
8207717 CTACTTCAATTTCAAGAGGATAGGAAATGACGTTGCTCT
1 -TACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
* * *
8207756 TACTTCAATTTC-AGA-GATA-AAGACT--TGTTATCCAACT
1 TACTTCAATTTCAAGAGGATAGGAGA-TGATG-T-TGC-TCT
*
8207793 CTACTTCAATTTCAAGAGGATAGGAGATGACGTTGCTCT
1 -TACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
* * *
8207832 TACTTCAATTTC-AGA-GATA-AAGACT--TGTTATCCAACT
1 TACTTCAATTTCAAGAGGATAGGAGA-TGATG-T-TGC-TCT
8207869 CTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
1 -TACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
8207908 TACTTCAATTTCAA
1 TACTTCAATTTCAA
8207922 AGATAAAGAC
Statistics
Matches: 185, Mismatches: 27, Indels: 60
0.68 0.10 0.22
Matches are distributed among these distances:
34 3 0.02
35 10 0.05
36 21 0.11
37 15 0.08
38 85 0.46
39 15 0.08
40 21 0.11
41 11 0.06
42 4 0.02
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (38 bp):
TACTTCAATTTCAAGAGGATAGGAGATGATGTTGCTCT
Found at i:8207943 original size:18 final size:18
Alignment explanation
Indices: 8207917--8207954 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
8207907 TTACTTCAAT
8207917 TTCAAAGATAAAGACTTG
1 TTCAAAGATAAAGACTTG
*
8207935 TTCAGAGATAAAGACTTG
1 TTCAAAGATAAAGACTTG
8207953 TT
1 TT
8207955 ATCCAACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (18 bp):
TTCAAAGATAAAGACTTG
Found at i:8207945 original size:322 final size:322
Alignment explanation
Indices: 8207291--8208073 Score: 1530
Period size: 322 Copynumber: 2.4 Consensus size: 322
8207281 TTACTTCAAT
* *
8207291 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
8207356 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
66 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
8207421 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
131 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
8207486 GAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTAC
196 GAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTAC
8207551 TTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTG
261 TTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTG
8207613 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
8207678 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
66 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
8207743 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
131 ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
8207808 GAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTAC
196 GAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTAC
8207873 TTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTG
261 TTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTG
8207935 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
*
8208000 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGGTAGGAA
66 CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
*
8208065 ATGATGTTG
131 ATGACGTTG
8208074 GATTGATGTG
Statistics
Matches: 457, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
322 457 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (322 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
CTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
ATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAA
GAGGATAGGAGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGTTATCCAACTCTAC
TTCAATTTCAAGAGGATAGGAGATGATGTTGCTCTTACTTCAATTTCAAAGATAAAGACTTG
Found at i:8208002 original size:94 final size:94
Alignment explanation
Indices: 8207841--8208030 Score: 344
Period size: 94 Copynumber: 2.0 Consensus size: 94
8207831 TTACTTCAAT
* * *
8207841 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAGATGATGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
8207906 CTTACTTCAATTTCAAAGATAAAGACTTG
66 CTTACTTCAATTTCAAAGATAAAGACTTG
8207935 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
*
8208000 CTTACTTCAATTTCAGAGATAAAGACTTG
66 CTTACTTCAATTTCAAAGATAAAGACTTG
8208029 TT
1 TT
8208031 ATCCAACTCT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 92 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (94 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAATTTCAAGAGGATAGGAAATGACGTTGCT
CTTACTTCAATTTCAAAGATAAAGACTTG
Found at i:8208044 original size:38 final size:38
Alignment explanation
Indices: 8207935--8208052 Score: 113
Period size: 38 Copynumber: 3.1 Consensus size: 38
8207925 TAAAGACTTG
*
8207935 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTAAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
* *
8207973 TTCAAGAGGATAGGAAATGAC--G-T-TGC-TCT-TACTTCAAT
1 TTC-AGA-GAT---AAA-GACTTGTTATCCAACTCTACTTCAAT
8208011 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
1 TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
8208049 TTCA
1 TTCA
8208053 AGAGGGTAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
32 3 0.05
33 3 0.05
34 1 0.02
35 1 0.02
36 5 0.08
37 5 0.08
38 27 0.43
39 5 0.08
40 5 0.08
41 1 0.02
42 1 0.02
43 3 0.05
44 3 0.05
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34
Consensus pattern (38 bp):
TTCAGAGATAAAGACTTGTTATCCAACTCTACTTCAAT
Found at i:8219706 original size:61 final size:59
Alignment explanation
Indices: 8219607--8219790 Score: 183
Period size: 59 Copynumber: 3.1 Consensus size: 59
8219597 TTTTGGAAAC
* * *
8219607 TTTGGCGAAATCGGGGCTAAAAATGGAATTTTGGAAAGTTCGGGGGGGTAAAATGGTGATT
1 TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGAAAAGTTC--GGGGGTAAAATGGTAATT
* * *
8219668 TTTGGTGAAATCGGGGTTAAAGATAGG-ATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
1 TTTGGCGAAATCGGGGCTAAAAAT-GGAATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
* * * * * * ***
8219727 TTTGACAAAACCGGGGTTAAAAACGGAATTT-TAGAAAGTTTAAGGGTAAAATGGTAATT
1 TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGA-AAAGTTCGGGGGTAAAATGGTAATT
8219786 TTTGG
1 TTTGG
8219791 ACAGTCTAGG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
58 3 0.03
59 65 0.63
61 33 0.32
62 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.31, T:0.30
Consensus pattern (59 bp):
TTTGGCGAAATCGGGGCTAAAAATGGAATTTCGAAAAGTTCGGGGGTAAAATGGTAATT
Found at i:8220036 original size:162 final size:162
Alignment explanation
Indices: 8219861--8220198 Score: 579
Period size: 162 Copynumber: 2.1 Consensus size: 162
8219851 GGTACCTAGA
8219861 AGTCAAAGGACTAATTTATAAATCTTGAAAAA-TTCTCGGGCCAATTTTGTAATTAAATAAAAGT
1 AGTCAAAGGACTAATTTATAAATCTT-AAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGT
* *
8219925 TGATTTAAGGATTAAATTAAAATAAATTAAAAATGACAGGGACTAGATACATAAATAAGCCAAAA
65 TGATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAAATACATAAATAAGCCAAAA
*
8219990 AGTGACACGTGGCAGCCTCTGGTGCAATCAAAC
130 AGTGACACATGGCAGCCTCTGGTGCAATCAAAC
*
8220023 AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTTGGGCCAATTTTGTAATTAAATAAAAGTT
1 AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGTT
* * *
8220088 GATTTAAGGATTAAATTAAAACAAATTAAAAATGATAGGGGCTAAATACATAAGTAAGCCAAAAA
66 GATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAAATACATAAATAAGCCAAAAA
*
8220153 GTGACACATGGCAGCCTCTGGTGCAGTCAAAC
131 GTGACACATGGCAGCCTCTGGTGCAATCAAAC
*
8220185 TGTCAAAGGACTAA
1 AGTCAAAGGACTAA
8220199 ATTGAAAAGT
Statistics
Matches: 166, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
161 5 0.03
162 161 0.97
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (162 bp):
AGTCAAAGGACTAATTTATAAATCTTAAAAACTTCTCGGGCCAATTTTGTAATTAAATAAAAGTT
GATTTAAGGATTAAATTAAAACAAATTAAAAATGACAGGGACTAAATACATAAATAAGCCAAAAA
GTGACACATGGCAGCCTCTGGTGCAATCAAAC
Found at i:8221067 original size:16 final size:15
Alignment explanation
Indices: 8221047--8221085 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
8221037 CATTTATTGG
* *
8221047 TATTATTTATTATTA
1 TATTATTAATAATTA
8221062 TAATTATTAATAATTA
1 T-ATTATTAATAATTA
8221078 TATTATTA
1 TATTATTA
8221086 GTAGCAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTATTAATAATTA
Found at i:8221819 original size:17 final size:17
Alignment explanation
Indices: 8221786--8221871 Score: 120
Period size: 17 Copynumber: 5.1 Consensus size: 17
8221776 ATATTTAAAC
*
8221786 ATTTAAATTCAAAATAA
1 ATTTAAATTTAAAATAA
* *
8221803 ATTCAAATTTAACATAA
1 ATTTAAATTTAAAATAA
*
8221820 ATTTAAATTCT-AAATGA
1 ATTTAAATT-TAAAATAA
8221837 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
8221854 ATTTAAATTTAAAATAA
1 ATTTAAATTTAAAATAA
8221871 A
1 A
8221872 CTAAGGTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
16 1 0.02
17 58 0.97
18 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (17 bp):
ATTTAAATTTAAAATAA
Found at i:8222695 original size:16 final size:16
Alignment explanation
Indices: 8222654--8222704 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
8222644 TTTTTATTTT
8222654 TTTAA-AATATTT-ATA
1 TTTAATAAT-TTTAATA
* *
8222669 TTAAATTATTTTAATA
1 TTTAATAATTTTAATA
8222685 TTTAATAATTTTATATA
1 TTTAATAATTTTA-ATA
8222702 TTT
1 TTT
8222705 TTATTTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 7 0.24
16 16 0.55
17 6 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTAATAATTTTAATA
Found at i:8222842 original size:15 final size:14
Alignment explanation
Indices: 8222815--8222852 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
8222805 TTTAAATTAC
8222815 ATAATATAT-AAAA
1 ATAATATATAAAAA
8222828 ATAATATATAAAAA
1 ATAATATATAAAAA
*
8222842 AGTATTATATA
1 A-TAATATATA
8222853 CTTAAAACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 5 0.23
15 8 0.36
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (14 bp):
ATAATATATAAAAA
Found at i:8222850 original size:13 final size:13
Alignment explanation
Indices: 8222815--8222841 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8222805 TTTAAATTAC
8222815 ATAATATATAAAA
1 ATAATATATAAAA
8222828 ATAATATATAAAA
1 ATAATATATAAAA
8222841 A
1 A
8222842 AGTATTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAATATATAAAA
Found at i:8226236 original size:136 final size:137
Alignment explanation
Indices: 8226031--8226292 Score: 359
Period size: 136 Copynumber: 1.9 Consensus size: 137
8226021 AGCTGGGAGT
* **
8226031 TTAACTCTACGAGCTCTTATAATGTTAGTTAGGAACGTAGGTCTGCTAACTATTTTGGAGGTTGT
1 TTAACTCTACAAGCTCTTATAATGTTAGTTAGGAACGTAGGTCTGCTAACTATTTTAAAGGTTGT
* *
8226096 GATCTTAAATCG-AAAACCTTTATGACATCAACTAGAAGCGTAGGTCCGCTAGTTGTGTTAAAGC
66 GATCTTAAACCGTAAAACCTTTATGACATCAACTAGAAGCGTAGGTCCGCTAGTCGTGTTAAAGC
8226160 TATGAGC
131 TATGAGC
* * *
8226167 TTAACTCTACAAGCTTTTATAATGTTAGTT-GGAAACGTAGGT-TCGCTAGCTGTTTTAAAGGTT
1 TTAACTCTACAAGCTCTTATAATGTTAGTTAGG-AACGTAGGTCT-GCTAACTATTTTAAAGGTT
* ** * * *
8226230 GTGATCTTAAACCGTCAAACCTTTATGACATCAGGTGGGAGTGTAGGTCCGCTAGTCGTGTTA
64 GTGATCTTAAACCGTAAAACCTTTATGACATCAACTAGAAGCGTAGGTCCGCTAGTCGTGTTA
8226293 GAGGCTACGA
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
135 3 0.03
136 65 0.60
137 41 0.38
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (137 bp):
TTAACTCTACAAGCTCTTATAATGTTAGTTAGGAACGTAGGTCTGCTAACTATTTTAAAGGTTGT
GATCTTAAACCGTAAAACCTTTATGACATCAACTAGAAGCGTAGGTCCGCTAGTCGTGTTAAAGC
TATGAGC
Found at i:8228462 original size:21 final size:21
Alignment explanation
Indices: 8228438--8228489 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8228428 TAGAGGTAAG
8228438 ACTTGTATCGGTAGAA-GAGTC
1 ACTTGTATCGGTAGAACGA-TC
* * *
8228459 ACTTGCATCAGTAGAACTATC
1 ACTTGTATCGGTAGAACGATC
8228480 ACTTGTATCG
1 ACTTGTATCG
8228490 ATATAAATCT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (21 bp):
ACTTGTATCGGTAGAACGATC
Found at i:8232255 original size:54 final size:55
Alignment explanation
Indices: 8232175--8232280 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 55
8232165 GATTTTTTAA
* *
8232175 TTTAAAATTTTTAATCCTAATCAAATGTAGCTATTAAATTCATTAAATTTTGAAT
1 TTTAAAATTTTTAATCATAATCAAATGTAGCTATTAAATTAATTAAATTTTGAAT
* * * * *
8232230 TTTAAAA-TTTTAATCATTATTAAATGTAGTTGTTAAATTAATTAAGTTTTG
1 TTTAAAATTTTTAATCATAATCAAATGTAGCTATTAAATTAATTAAATTTTG
8232281 GTGTTTCTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
54 37 0.84
55 7 0.16
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.48
Consensus pattern (55 bp):
TTTAAAATTTTTAATCATAATCAAATGTAGCTATTAAATTAATTAAATTTTGAAT
Found at i:8234573 original size:17 final size:17
Alignment explanation
Indices: 8234551--8234584 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8234541 TCTCTTTTGC
*
8234551 ATTTTATTTTTATTAAA
1 ATTTTATTTTAATTAAA
8234568 ATTTTATTTTAATTAAA
1 ATTTTATTTTAATTAAA
8234585 GTAAGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTATTTTAATTAAA
Found at i:8236058 original size:14 final size:14
Alignment explanation
Indices: 8236027--8236071 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
8236017 TTCGAAAAAG
8236027 TCAACGGTCAAC-A
1 TCAACGGTCAACGA
8236040 GTCAACGGTCAACGA
1 -TCAACGGTCAACGA
*
8236055 TCAA-AGTCAACGA
1 TCAACGGTCAACGA
8236068 TCAA
1 TCAA
8236072 TCAACACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 12 0.41
14 16 0.55
15 1 0.03
ACGTcount: A:0.40, C:0.27, G:0.18, T:0.16
Consensus pattern (14 bp):
TCAACGGTCAACGA
Found at i:8236065 original size:13 final size:13
Alignment explanation
Indices: 8236047--8236071 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8236037 ACAGTCAACG
8236047 GTCAACGATCAAA
1 GTCAACGATCAAA
8236060 GTCAACGATCAA
1 GTCAACGATCAA
8236072 TCAACACCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.24, G:0.16, T:0.16
Consensus pattern (13 bp):
GTCAACGATCAAA
Found at i:8236083 original size:34 final size:34
Alignment explanation
Indices: 8236023--8236087 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
8236013 GTTTTTCGAA
* *
8236023 AAAGTCAACGGTCAACAGTCAACGGTCAACGATC
1 AAAGTCAACGATCAACAGACAACGGTCAACGATC
*
8236057 AAAGTCAACGATCAATCA-ACACCGGTCAACG
1 AAAGTCAACGATCAA-CAGACAACGGTCAACG
8236088 GTCGGTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 25 0.93
35 2 0.07
ACGTcount: A:0.40, C:0.28, G:0.18, T:0.14
Consensus pattern (34 bp):
AAAGTCAACGATCAACAGACAACGGTCAACGATC
Found at i:8237281 original size:17 final size:17
Alignment explanation
Indices: 8237259--8237330 Score: 81
Period size: 17 Copynumber: 4.2 Consensus size: 17
8237249 CGAACTTTTA
*
8237259 ATTTTAAATTTTAATTT
1 ATTTTAAATTTAAATTT
*
8237276 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
**
8237293 ATTTTGGATTTAAATTT
1 ATTTTAAATTTAAATTT
* * *
8237310 ATTTTGAATTAAAAATT
1 ATTTTAAATTTAAATTT
8237327 ATTT
1 ATTT
8237331 AATATTAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 48 1.00
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:8238138 original size:19 final size:19
Alignment explanation
Indices: 8238094--8238130 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8238084 TAATACCAAT
*
8238094 AATATTAATAACTGTTTTC
1 AATATTAATAACTATTTTC
8238113 AATATTAATAACTATTTT
1 AATATTAATAACTATTTT
8238131 AGTAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.03, T:0.49
Consensus pattern (19 bp):
AATATTAATAACTATTTTC
Done.