Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 31 of 163
Found at i:8239233 original size:29 final size:30
Alignment explanation
Indices: 8239181--8239348 Score: 148
Period size: 29 Copynumber: 5.7 Consensus size: 30
8239171 TAAATTGTCT
* *
8239181 AAAAATTATA-TTTTGACCCTCAAACTTTT
1 AAAAATTACATTTTTGACCCTCAAACTTTC
* *
8239210 GAAAATTACATTTTTGACCC-CAAAATTTCC
1 AAAAATTACATTTTTGACCCTCAAACTTT-C
* *
8239240 AAAAATTCCATTTTTG-CCCTCAAACTTCC
1 AAAAATTACATTTTTGACCCTCAAACTTTC
* *
8239269 AAAAATTCCATTTTTGACCCTTAAA-TTTCC
1 AAAAATTACATTTTTGACCCTCAAACTTT-C
* ** * * *
8239299 CAAAATTATGTTTTT-ACCCCCAAAATTCC
1 AAAAATTACATTTTTGACCCTCAAACTTTC
*
8239328 AAAAATTCCATTTTTGACCCT
1 AAAAATTACATTTTTGACCCT
8239349 GACATTTTCA
Statistics
Matches: 110, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
29 56 0.51
30 54 0.49
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (30 bp):
AAAAATTACATTTTTGACCCTCAAACTTTC
Found at i:8239265 original size:59 final size:60
Alignment explanation
Indices: 8239191--8239347 Score: 185
Period size: 59 Copynumber: 2.6 Consensus size: 60
8239181 AAAAATTATA
***
8239191 TTTTGACCCTCAAACTTTTGAAAATTACATTTTTGACCCCAAAATTTCCAAAAATTCCAT
1 TTTTGACCCTCAAACTTCCAAAAATTACATTTTTGACCCCAAAATTTCCAAAAATTCCAT
* ** *
8239251 TTTTG-CCCTCAAACTTCCAAAAATTCCATTTTTGACCCTTAAATTTCCCAAAATT--AT
1 TTTTGACCCTCAAACTTCCAAAAATTACATTTTTGACCCCAAAATTTCCAAAAATTCCAT
* * * *
8239308 GTTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCC
1 -TTTTGACCCTCAAACTTCCAAAAATTACATTTTTGACCC
8239348 TGACATTTTC
Statistics
Matches: 85, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
57 2 0.02
58 4 0.05
59 74 0.87
60 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.37
Consensus pattern (60 bp):
TTTTGACCCTCAAACTTCCAAAAATTACATTTTTGACCCCAAAATTTCCAAAAATTCCAT
Found at i:8239348 original size:59 final size:59
Alignment explanation
Indices: 8239211--8239378 Score: 194
Period size: 59 Copynumber: 2.8 Consensus size: 59
8239201 CAAACTTTTG
* * * * * *
8239211 AAAATTACATTTTTGACCCCAAAATTTCCAAAAATTCCATTTTTGCCCTCAAACTTCCA
1 AAAATTCCATTTTTGACCCTAAAATTTCCAAAAATTACATTTTTACCCCCAAAATTCCA
* * **
8239270 AAAATTCCATTTTTGACCCTTAAATTTCCCAAAATTATGTTTTTACCCCCAAAATTCCA
1 AAAATTCCATTTTTGACCCTAAAATTTCCAAAAATTACATTTTTACCCCCAAAATTCCA
* * * *
8239329 AAAATTCCATTTTTGACCCTGACATTTTC-AAGATTACCATTTTTACCCCC
1 AAAATTCCATTTTTGACCCTAAAATTTCCAAAAATTA-CATTTTTACCCCC
8239379 GGAGGTTCGA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
58 6 0.07
59 86 0.93
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.36
Consensus pattern (59 bp):
AAAATTCCATTTTTGACCCTAAAATTTCCAAAAATTACATTTTTACCCCCAAAATTCCA
Found at i:8244738 original size:10 final size:9
Alignment explanation
Indices: 8244718--8244795 Score: 70
Period size: 10 Copynumber: 8.3 Consensus size: 9
8244708 GATTTTGATC
*
8244718 AAAATGAAA
1 AAAAAGAAA
8244727 AGAAAAGAAA
1 A-AAAAGAAA
8244737 AGAAAAGAAA
1 A-AAAAGAAA
8244747 AATAAAGAAA
1 AA-AAAGAAA
8244757 AATAAA-AAA
1 AA-AAAGAAA
*
8244766 CAAAAA-ACA
1 -AAAAAGAAA
*
8244775 AAAAAGAGA
1 AAAAAGAAA
8244784 AAAAAGAAA
1 AAAAAGAAA
8244793 AAA
1 AAA
8244796 GAAAAAGAGA
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
8 5 0.08
9 23 0.38
10 33 0.54
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.04
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:8244743 original size:15 final size:13
Alignment explanation
Indices: 8244718--8244801 Score: 71
Period size: 15 Copynumber: 5.8 Consensus size: 13
8244708 GATTTTGATC
*
8244718 AAAATGAAAAGAAA
1 AAAAAGAAAA-AAA
8244732 AGAAAAGAAAAGAAA
1 A-AAAAGAAAA-AAA
8244747 AATAAAGAAAAATAA
1 AA-AAAGAAAAA-AA
8244762 AAAACA-AAAAACAA
1 AAAA-AGAAAAA-AA
8244776 AAAAGAGAAAAAAGA
1 AAAA-AGAAAAAA-A
8244791 AAAAAGAAAAA
1 AAAAAGAAAAA
8244802 GAGAGGTCGA
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
14 25 0.41
15 36 0.59
ACGTcount: A:0.82, C:0.02, G:0.12, T:0.04
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:8244786 original size:8 final size:7
Alignment explanation
Indices: 8244724--8244801 Score: 59
Period size: 7 Copynumber: 10.4 Consensus size: 7
8244714 GATCAAAATG
8244724 AAAAGAA
1 AAAAGAA
8244731 AAGAA-AA
1 AA-AAGAA
8244738 GAAAAGAA
1 -AAAAGAA
*
8244746 AAATAAAGA
1 AAA-AGA-A
*
8244755 AAAATAA
1 AAAAGAA
*
8244762 AAAACAA
1 AAAAGAA
*
8244769 AAAACAAA
1 AAAA-GAA
8244777 AAAGAGAA
1 AAA-AGAA
8244785 AAAAGAA
1 AAAAGAA
8244792 AAAAGAA
1 AAAAGAA
8244799 AAA
1 AAA
8244802 GAGAGGTCGA
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
7 34 0.58
8 20 0.34
9 5 0.08
ACGTcount: A:0.83, C:0.03, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAGAA
Found at i:8244786 original size:9 final size:8
Alignment explanation
Indices: 8244724--8244801 Score: 52
Period size: 9 Copynumber: 9.2 Consensus size: 8
8244714 GATCAAAATG
8244724 AAAAGAAAA
1 AAAAG-AAA
8244733 GAAAAGAAA
1 -AAAAGAAA
*
8244742 AGAA-AAA
1 AAAAGAAA
*
8244749 TAAAGAAA
1 AAAAGAAA
*
8244757 AATAAAAAA
1 AA-AAGAAA
*
8244766 CAAAAAACAA
1 -AAAAGA-AA
8244776 AAAAGAGAA
1 AAAAGA-AA
8244785 AAAAG-AA
1 AAAAGAAA
8244792 AAAAGAAA
1 AAAAGAAA
8244800 AA
1 AA
8244802 GAGAGGTCGA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
7 12 0.21
8 11 0.20
9 24 0.43
10 9 0.16
ACGTcount: A:0.83, C:0.03, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAGAAA
Found at i:8244787 original size:24 final size:24
Alignment explanation
Indices: 8244760--8244806 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8244750 AAAGAAAAAT
8244760 AAAAAACAAAAAACAAAAA-AGAG
1 AAAAAACAAAAAACAAAAAGAGAG
* *
8244783 AAAAAAGAAAAAAGAAAAAGAGAG
1 AAAAAACAAAAAACAAAAAGAGAG
8244807 GTCGAGGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (24 bp):
AAAAAACAAAAAACAAAAAGAGAG
Found at i:8244800 original size:5 final size:5
Alignment explanation
Indices: 8244718--8244793 Score: 56
Period size: 5 Copynumber: 15.8 Consensus size: 5
8244708 GATTTTGATC
* *
8244718 AAAATG AAAAG AAAAG AAAAG AAAAG AAAA- ATAAAG AAAA- ATAA- AAAAC
1 AAAA-G AAAAG AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG AAAAG AAAAG
*
8244767 AAAA- AACAA- AAAAG AGAA- AAAAG AAAA
1 AAAAG AA-AAG AAAAG AAAAG AAAAG AAAA
8244794 AAGAAAAAGA
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
4 14 0.23
5 41 0.68
6 5 0.08
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:8245996 original size:50 final size:50
Alignment explanation
Indices: 8245942--8246195 Score: 196
Period size: 50 Copynumber: 5.1 Consensus size: 50
8245932 AGCAGCCTGT
*
8245942 GTACCTCAGAAGACAAGAAGGGAAAGATTTAAGTCGCAACGGTGAATCCA
1 GTACCTCAGAAGACAAGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCA
* * * *
8245992 GTACCAT-A-AAGACATGAAGGGAAAGATCTAAGACCGCAACGGCGGATCCA
1 GTACC-TCAGAAGACAAGAAGGGAAAGATTTAAG-TCGCAACGGCGAATCCA
* * * * * * *
8246042 GTACCACA-AAGACACAAAAGGGAAAGGTTTAAGTCGAAACGGTGGA-CCGT
1 GTACCTCAGAAGACA-AGAAGGGAAAGATTTAAGTCGCAACGGCGAATCC-A
* *
8246092 GTACCTCAGAAGACAAG-AGAGGAAAGATTTAAGCCACAACGGCGAATCCA
1 GTACCTCAGAAGACAAGAAG-GGAAAGATTTAAGTCGCAACGGCGAATCCA
* * *** * ** * *
8246142 ATACCAC-GAAGATTTGAAAGGGAAAGGTTTAAGTCGTGAGGGCGAACCCA
1 GTACCTCAGAAGACAAG-AAGGGAAAGATTTAAGTCGCAACGGCGAATCCA
8246192 GTAC
1 GTAC
8246196 TTTATAAATA
Statistics
Matches: 158, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
49 32 0.20
50 101 0.64
51 25 0.16
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (50 bp):
GTACCTCAGAAGACAAGAAGGGAAAGATTTAAGTCGCAACGGCGAATCCA
Found at i:8246096 original size:100 final size:100
Alignment explanation
Indices: 8245954--8246177 Score: 249
Period size: 100 Copynumber: 2.2 Consensus size: 100
8245944 ACCTCAGAAG
* * *
8245954 ACAAGAAGGGAAAGATTTAAGTCGCAACGGTGAATCCAGTACCAT-A-AAGACATGA-AGGGAAA
1 ACAA-AAGGGAAAGGTTTAAGTCGAAACGGTGAATCCAGTACC-TCAGAAGACAAGAGA-GGAAA
* * *
8246016 GATCTAAGACCGCAACGGCGGATCCAGTACCACAAAGAC
63 GATCTAAG-CCACAACGGCGAATCCAATACCACAAAGAC
* *
8246055 ACAAAAGGGAAAGGTTTAAGTCGAAACGGTGGA-CCGTGTACCTCAGAAGACAAGAGAGGAAAGA
1 ACAAAAGGGAAAGGTTTAAGTCGAAACGGTGAATCC-AGTACCTCAGAAGACAAGAGAGGAAAGA
* * *
8246119 TTTAAGCCACAACGGCGAATCCAATACCACGAAGAT
65 TCTAAGCCACAACGGCGAATCCAATACCACAAAGAC
***
8246155 TTGAAAGGGAAAGGTTTAAGTCG
1 ACAAAAGGGAAAGGTTTAAGTCG
8246178 TGAGGGCGAA
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
99 3 0.03
100 77 0.73
101 24 0.23
102 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (100 bp):
ACAAAAGGGAAAGGTTTAAGTCGAAACGGTGAATCCAGTACCTCAGAAGACAAGAGAGGAAAGAT
CTAAGCCACAACGGCGAATCCAATACCACAAAGAC
Found at i:8246116 original size:150 final size:150
Alignment explanation
Indices: 8245840--8246147 Score: 442
Period size: 150 Copynumber: 2.1 Consensus size: 150
8245830 CTATAGGTCT
* * *
8245840 CAGTACCAGGAAGACATGAAGGGAAAGATCTAAGACCGCAATGGCGGATCCAGTACCACAAAGAT
1 CAGTACCAGAAAGACATGAAGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACAAAGAC
* *
8245905 GCCAAAGGGAAAGGTCTAAGTCACAACAGCAGCCTGTGTACCTCAGAAGACAAGAAGGGAAAGAT
66 ACAAAAGGGAAAGGTCTAAGTCACAACAGCAGCCTGTGTACCTCAGAAGACAAGAAGGGAAAGAT
* * *
8245970 TTAAGTCGCAACGGTGAATC
131 TTAAGCCACAACGGCGAATC
*
8245990 CAGTACCATAAAGACATGAAGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACAAAGAC
1 CAGTACCAGAAAGACATGAAGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACAAAGAC
* * **
8246055 ACAAAAGGGAAAGGTTTAAGTCGA-AACGGTGGACC-GTGTACCTCAGAAGACAAG-AGAGGAAA
66 ACAAAAGGGAAAGGTCTAAGTC-ACAACAGCAG-CCTGTGTACCTCAGAAGACAAGAAG-GGAAA
8246117 GATTTAAGCCACAACGGCGAATC
128 GATTTAAGCCACAACGGCGAATC
*
8246140 CAATACCA
1 CAGTACCA
8246148 CGAAGATTTG
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
149 2 0.01
150 136 0.96
151 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.13
Consensus pattern (150 bp):
CAGTACCAGAAAGACATGAAGGGAAAGATCTAAGACCGCAACGGCGGATCCAGTACCACAAAGAC
ACAAAAGGGAAAGGTCTAAGTCACAACAGCAGCCTGTGTACCTCAGAAGACAAGAAGGGAAAGAT
TTAAGCCACAACGGCGAATC
Found at i:8247398 original size:17 final size:17
Alignment explanation
Indices: 8247376--8247453 Score: 102
Period size: 17 Copynumber: 4.6 Consensus size: 17
8247366 TGAACTTTTA
*
8247376 ATTTTAAATTTGAATTT
1 ATTTTAAATTTAAATTT
*
8247393 ATTTTAAATTTAAATTC
1 ATTTTAAATTTAAATTT
***
8247410 ATTTTGGGTTTAAATTT
1 ATTTTAAATTTAAATTT
8247427 ATTTTAAATTTAAATTT
1 ATTTTAAATTTAAATTT
*
8247444 ATTTTGAATT
1 ATTTTAAATT
8247454 AAAAATTGTT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 51 1.00
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (17 bp):
ATTTTAAATTTAAATTT
Found at i:8248986 original size:59 final size:57
Alignment explanation
Indices: 8248819--8249024 Score: 202
Period size: 59 Copynumber: 3.5 Consensus size: 57
8248809 CCTTGGAGGT
* * * *
8248819 CCCTAAATTATCTAAAAATTATATTTTGA-CCCTAAAATTTCCAAAAATTACATTTTT-AC
1 CCCTAAATT-TC--AAAATTACATTTTTACCCCCAAAA-TTCCAAAAATTCCATTTTTGAC
* * * * *
8248878 CACTAAACTTTCCAAAATTTCATTTTT-GCCCCAAACTTTCAAAAATTCCATTTTTGAC
1 CCCTAAA-TTT-CAAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGAC
8248936 CCCTAAATTTCTTAAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGAC
1 CCCTAAATTTC--AAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGAC
* *
8248995 CCCGACACTTTCAAAATTACCATTTTTACC
1 CCCTA-AATTTCAAAATTA-CATTTTTACC
8249025 TCCGGAGGTC
Statistics
Matches: 123, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
56 1 0.01
57 20 0.16
58 45 0.37
59 49 0.40
60 8 0.07
ACGTcount: A:0.35, C:0.25, G:0.02, T:0.37
Consensus pattern (57 bp):
CCCTAAATTTCAAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGAC
Found at i:8249010 original size:30 final size:30
Alignment explanation
Indices: 8248842--8249021 Score: 176
Period size: 29 Copynumber: 6.1 Consensus size: 30
8248832 AAAAATTATA
* *
8248842 TTTTGA-CCCTAAAATTTCCAAAAATTACAT
1 TTTTGACCCCTAAACTTT-CAAAAATTCCAT
* * *
8248872 TTTT-ACCACTAAACTTTCCAAAATTTCAT
1 TTTTGACCCCTAAACTTTCAAAAATTCCAT
8248901 TTTTG-CCCC-AAACTTTCAAAAATTCCAT
1 TTTTGACCCCTAAACTTTCAAAAATTCCAT
* *
8248929 TTTTGACCCCTAAA-TTTCTTAAAATTACAT
1 TTTTGACCCCTAAACTTTC-AAAAATTCCAT
* * *
8248959 TTTT-ACCCCCAAAATTCCAAAAATTCCAT
1 TTTTGACCCCTAAACTTTCAAAAATTCCAT
* *
8248988 TTTTGACCCCGACACTTTC-AAAATTACCAT
1 TTTTGACCCCTAAACTTTCAAAAATT-CCAT
8249018 TTTT
1 TTTT
8249022 ACCTCCGGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
28 22 0.18
29 53 0.42
30 50 0.40
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
TTTTGACCCCTAAACTTTCAAAAATTCCAT
Found at i:8249011 original size:58 final size:57
Alignment explanation
Indices: 8248833--8249024 Score: 201
Period size: 58 Copynumber: 3.3 Consensus size: 57
8248823 AAATTATCTA
* * * * *
8248833 AAAATTATATTTTGA-CCCTAAAATTTCCAAAAATTACATTTTT-ACCACTAAACTTTCC
1 AAAATTACATTTTTACCCCCAAAA-TTCCAAAAATTCCATTTTTGACCCCT-AACTTT-C
* * * * *
8248891 AAAATTTCATTTTT-GCCCCAAACTTTCAAAAATTCCATTTTTGACCCCTAAATTTC
1 AAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCCCTAACTTTC
*
8248947 TTAAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCCCGACACTTTC
1 --AAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCCCTA-ACTTTC
8249007 AAAATTACCATTTTTACC
1 AAAATTA-CATTTTTACC
8249025 TCCGGAGGTC
Statistics
Matches: 112, Mismatches: 15, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
56 1 0.01
57 22 0.20
58 42 0.38
59 42 0.38
60 5 0.04
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (57 bp):
AAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCCCTAACTTTC
Found at i:8249037 original size:59 final size:58
Alignment explanation
Indices: 8248823--8249052 Score: 173
Period size: 59 Copynumber: 3.9 Consensus size: 58
8248813 GGAGGTCCCT
* * * * * * *
8248823 AAATTATCTAAAAATTATATTTTGA-CCCTAAAATTTCCAAAAATTACATTTTT-ACCACT
1 AAATT-TCT-AAAATTACATTTTTACCCCCAAAA-GTCCAAAAATTCCATTTTTGACCCCG
* * * ** * *
8248882 AAACTTTCCAAAATTTCATTTTT-GCCCCAAACTTTCAAAAATTCCATTTTTGACCCCT
1 AAA-TTTCTAAAATTACATTTTTACCCCCAAAAGTCCAAAAATTCCATTTTTGACCCCG
*
8248940 AAATTTCTTAAAATTACATTTTTACCCCCAAAATTCCAAAAATTCCATTTTTGACCCCG
1 AAATTTC-TAAAATTACATTTTTACCCCCAAAAGTCCAAAAATTCCATTTTTGACCCCG
* * ** *
8248999 ACACTTTC-AAAATTACCATTTTTACCTCCGGAGGTCCAAAAA-TCCTATTTTTGA
1 A-AATTTCTAAAATTA-CATTTTTACCCCCAAAAGTCCAAAAATTCC-ATTTTTGA
8249053 TCTTTATTTT
Statistics
Matches: 142, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
57 21 0.15
58 48 0.34
59 66 0.46
60 7 0.05
ACGTcount: A:0.35, C:0.23, G:0.04, T:0.37
Consensus pattern (58 bp):
AAATTTCTAAAATTACATTTTTACCCCCAAAAGTCCAAAAATTCCATTTTTGACCCCG
Found at i:8254259 original size:59 final size:60
Alignment explanation
Indices: 8254125--8254272 Score: 156
Period size: 59 Copynumber: 2.5 Consensus size: 60
8254115 TAAAACTTTA
* *
8254125 GACACCCGAGGGTAAAATAGTAACTTTTAGAAAAAAATCAAGATCAAAAACAAAATTTTTG
1 GACATCCGAGGGTAAAATAGTAACTTTTAG-AAAAAATCAAGATAAAAAACAAAATTTTTG
* * * * * * * *
8254186 GACATTCGAAGGTAAAATGGTGATTTTTAG-AAAAATCAGGATAAAAAACGAATTTTTTG
1 GACATCCGAGGGTAAAATAGTAACTTTTAGAAAAAATCAAGATAAAAAACAAAATTTTTG
* *
8254245 GACATCC-AGGGGTAAAAGAGTAATTTTT
1 GACATCCGA-GGGTAAAATAGTAACTTTT
8254273 GCAAGTTTCG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
58 1 0.01
59 46 0.65
61 24 0.34
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (60 bp):
GACATCCGAGGGTAAAATAGTAACTTTTAGAAAAAATCAAGATAAAAAACAAAATTTTTG
Found at i:8254328 original size:28 final size:29
Alignment explanation
Indices: 8254254--8254502 Score: 226
Period size: 29 Copynumber: 8.7 Consensus size: 29
8254244 GGACATCCAG
*
8254254 GGGTAAAAGA-GTAATTTTTGCAAGTTTCGA
1 GGGTAAAA-ATGTAATTTTTGGAAG-TTCGA
* ** * *
8254284 --GAAAAAATAAAATTTTTAGAAGTTCGG
1 GGGTAAAAATGTAATTTTTGGAAGTTCGA
* * *
8254311 GGGTAAAAATGGAATTTTTGAAAGTTTTG-
1 GGGTAAAAATGTAATTTTTGGAAG-TTCGA
* *
8254340 GGGTTAAAATTTGAATTTTTGGAAGTTCGA
1 GGGTAAAAATGT-AATTTTTGGAAGTTCGA
** *
8254370 -GGTAAAAATGTAA-TTTTCAAAGGGTT-TA
1 GGGTAAAAATGTAATTTTTGGAA--GTTCGA
* **
8254398 GGGTAAAAATGGAATTTTTGGAAGTTTAA
1 GGGTAAAAATGTAATTTTTGGAAGTTCGA
*
8254427 AGGT-AAAATGTAATTTTTGGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGGAAGTTCGA
8254455 GGGTAAAAATGTAATTTTTGGAAGTTCGA
1 GGGTAAAAATGTAATTTTTGGAAGTTCGA
8254484 GGGTAAAAATGTAATTTTT
1 GGGTAAAAATGTAATTTTT
8254503 TGACAGTTTA
Statistics
Matches: 176, Mismatches: 31, Indels: 25
0.76 0.13 0.11
Matches are distributed among these distances:
27 11 0.06
28 45 0.26
29 100 0.57
30 20 0.11
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.36
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGGAAGTTCGA
Found at i:8254379 original size:58 final size:58
Alignment explanation
Indices: 8254294--8254511 Score: 212
Period size: 57 Copynumber: 3.7 Consensus size: 58
8254284 GAAAAAATAA
* * *
8254294 AATTTTTAGAAGTTCGGGGGTAAAAATGGAATTTTTGAAAGTTTTGGGGTTAAAATTTG
1 AATTTTTGGAAGTTC-GAGGTAAAAATGTAATTTTTGAAAGTTTTGGGGTTAAAATTTG
* * * * *
8254353 AATTTTTGGAAGTTCGAGGTAAAAATGTAA-TTTTCAAAGGGTTTAGGG-TAAAAATGG
1 AATTTTTGGAAGTTCGAGGTAAAAATGTAATTTTTGAAA-GTTTTGGGGTTAAAATTTG
** * * * *
8254410 AATTTTTGGAAGTTTAAAGGT-AAAATGTAATTTTTGGAAG-TTCGAGGGTAAAAATGT-
1 AATTTTTGGAAG-TTCGAGGTAAAAATGTAATTTTTGAAAGTTTTG-GGGTTAAAATTTG
*
8254467 AATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTTGACAGTTT
1 AATTTTTGGAAGTTCGA-GGTAAAAATGTAA-TTTTTGAAAGTTT
8254512 AGGGACCTCC
Statistics
Matches: 128, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
56 5 0.04
57 54 0.42
58 45 0.35
59 22 0.17
60 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (58 bp):
AATTTTTGGAAGTTCGAGGTAAAAATGTAATTTTTGAAAGTTTTGGGGTTAAAATTTG
Found at i:8256452 original size:6 final size:6
Alignment explanation
Indices: 8256441--8256513 Score: 67
Period size: 6 Copynumber: 12.3 Consensus size: 6
8256431 AAATTTATAC
** * ** *
8256441 TAAATT TAAATT TAAAAA TGAATT TAAATT TAAAAA TGAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
8256489 TAAATT TTAA-G TAAATT TAAATT TA
1 TAAATT TAAATT TAAATT TAAATT TA
8256514 GAAATAAATC
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
5 3 0.06
6 47 0.94
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (6 bp):
TAAATT
Found at i:8256464 original size:18 final size:18
Alignment explanation
Indices: 8256443--8256492 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
8256433 ATTTATACTA
8256443 AATTTAAATTTAAAAATG
1 AATTTAAATTTAAAAATG
8256461 AATTTAAATTTAAAAATG
1 AATTTAAATTTAAAAATG
8256479 AATTTAAATTTAAA
1 AATTTAAATTTAAA
8256493 TTTTAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (18 bp):
AATTTAAATTTAAAAATG
Found at i:8256509 original size:23 final size:24
Alignment explanation
Indices: 8256461--8256513 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
8256451 TTTAAAAATG
*
8256461 AATTTAAATTTAAAAATGAATTTA
1 AATTTAAATTTAAAAATAAATTTA
* *
8256485 AATTTAAATTT-TAAGTAAATTTA
1 AATTTAAATTTAAAAATAAATTTA
8256508 AATTTA
1 AATTTA
8256514 GAAATAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.58
24 11 0.42
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (24 bp):
AATTTAAATTTAAAAATAAATTTA
Found at i:8257063 original size:102 final size:102
Alignment explanation
Indices: 8256811--8257959 Score: 1802
Period size: 102 Copynumber: 11.5 Consensus size: 102
8256801 TGATGTCGAG
* *
8256811 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATTCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
* *
8256876 TACTGCAACTTCAAGAGGATAGGAATTGACG-TTAAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * *
8256912 GCTTCATCTTGCTCTTACTATAACTTCAGAGAGATAAAGACTTGATATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
* *
8256977 TACTGCAACTTCAAGAGGGTAAGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * *
8257014 GCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
*
8257079 TACTACAACTTC-A-A-G--A-G----GA---TTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * *
8257103 GCTTCATCTTGCTTTTACTACAACTTCAGAGAGATAAGGACTTGCTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
*
8257168 TATTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * * *
8257205 GCTTCATCTTGCTCTTACTATAACTTCAGAGAAATAAAGACCTGCTA-T-TTTTTAAACCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
8257268 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
*
8257305 GCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
*
8257368 TACTGCAACTTCAAGAGGATAGGAATTAATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
*
8257405 ACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
*
8257470 TACTGCACCTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
8257507 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
8257570 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * * *
8257607 GCTTTATCTTTCTCTTACTACAACTTCAGAGAGAAAAAGACTTGCTATTATTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
8257672 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* * *
8257709 GCTTCATCTTGCTCTTATTACAACTTCAGAGAGATAAAGACTTGTTATTATTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
*
8257774 TACTACAACTTCAAGAGGATAGGAATTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
* *
8257811 GCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA--ATTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
* *
8257874 TACTACAACTTCAAGAGGATAGGAGTTGATGTTTGAA
66 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
*
8257911 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAATACTTGCTATT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATT
8257960 TTTACTTGAT
Statistics
Matches: 975, Mismatches: 53, Indels: 39
0.91 0.05 0.04
Matches are distributed among these distances:
89 76 0.08
90 1 0.00
91 1 0.00
92 3 0.00
94 1 0.00
95 1 0.00
96 1 0.00
97 1 0.00
99 3 0.00
100 381 0.39
101 95 0.10
102 411 0.42
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (102 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAA
Found at i:8257160 original size:89 final size:89
Alignment explanation
Indices: 8257009--8257187 Score: 304
Period size: 89 Copynumber: 2.0 Consensus size: 89
8256999 GAATTGATGT
8257009 TTGAAGCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCC
8257074 AACTTTACTACAACTTCAAGAGGA
66 AACTTTACTACAACTTCAAGAGGA
* * * *
8257098 TTGAAGCTTCATCTTGCTTTTACTACAACTTCAGAGAGATAAGGACTTGCTATTGTTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCC
* *
8257163 AACTTTATTGCAACTTCAAGAGGA
66 AACTTTACTACAACTTCAAGAGGA
8257187 T
1 T
8257188 AGGAATTGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (89 bp):
TTGAAGCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCC
AACTTTACTACAACTTCAAGAGGA
Found at i:8257294 original size:100 final size:100
Alignment explanation
Indices: 8257098--8257962 Score: 1451
Period size: 100 Copynumber: 8.6 Consensus size: 100
8257088 TTCAAGAGGA
* *
8257098 TTGAAGCTTCATCTTGCTTTTACTACAACTTCAGAGAGATAAGGACTTGCTATTGTTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCC
* *
8257163 AACTTTATTGCAACTTCAAGAGGATAGGAATTGATGT
64 CACTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
* * * *
8257200 TTGAAGCTTCATCTTGCTCTTACTATAACTTCAGAGAAATAAAGACCTGCTATTTTTTAAACCCA
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
8257265 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
66 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
*
8257300 TTGAAGCTTTATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
*
8257365 CTTTACTGCAACTTCAAGAGGATAGGAATTAATGT
66 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
*
8257400 TTGAAACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCC
*
8257465 CACTTTACTGCACCTTCAAGAGGATAGGAATTGATGT
64 CACTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
8257502 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
8257567 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
66 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
* * *
8257602 TTGAAGCTTTATCTTTCTCTTACTACAACTTCAGAGAGAAAAAGACTTGCTATTATTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCC
8257667 CACTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
64 CACTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
* *
8257704 TTGAAGCTTCATCTTGCTCTTATTACAACTTCAGAGAGATAAAGACTTGTTATTATTTTTAATCC
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-T-TTTTTAATCC
*
8257769 CACTTTACTACAACTTCAAGAGGATAGGAATTGATGT
64 CACTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
* *
8257806 TTGAAGCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTAATTTTTAATCCCA
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
* *
8257871 CTTTACTACAACTTCAAGAGGATAGGAGTTGATGT
66 CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
*
8257906 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAATACTTGCTATTTTT
1 TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTT
8257963 ACTTGATCCA
Statistics
Matches: 722, Mismatches: 37, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
100 383 0.53
101 4 0.01
102 335 0.46
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (100 bp):
TTGAAGCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTTTTTAATCCCA
CTTTACTGCAACTTCAAGAGGATAGGAATTGATGT
Found at i:8257461 original size:202 final size:201
Alignment explanation
Indices: 8256811--8257962 Score: 1760
Period size: 202 Copynumber: 5.8 Consensus size: 201
8256801 TGATGTCGAG
* * *
8256811 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATTCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-TATTTTTAATCCCACTT
* * *
8256876 TACTGCAACTTCAAGAGGATAGGAATTGACG-TTAAAGCTTCATCTTGCTCTTACTATAACTTCA
65 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA
* * * *
8256940 GAGAGATAAAGACTTGATATTGTTTTTAATCCAACTTTACTGCAACTTCAAGAGGGTAAGAATTG
130 GAGAGATAAAGACTTGCTA-T-TTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTG
8257005 ATGTTTGAA
193 ATGTTTGAA
* * * *
8257014 GCTTCATCTTGCTCTTACTACAACTTCACAGAGATAAAGACTTACTATTGTTTTTAATCCAACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-TATTTTTAATCCCACTT
* *
8257079 TACTACAACTTC-A-A-G--A-G----GA---TTGAAGCTTCATCTTGCTTTTACTACAACTTCA
65 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA
* * *
8257131 GAGAGATAAGGACTTGCTATTGTTTTTAATCCAACTTTATTGCAACTTCAAGAGGATAGGAATTG
130 GAGAGATAAAGACTTGCTA-T-TTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTG
8257196 ATGTTTGAA
193 ATGTTTGAA
* * * *
8257205 GCTTCATCTTGCTCTTACTATAACTTCAGAGAAATAAAGACCTGCTAT-TTTTTAAACCCACTTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATATTTTTAATCCCACTTT
*
8257269 ACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTTATCTTGCTCTTACTACAACTTCAG
66 ACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAG
*
8257334 AGAGATAAAGACTTGCTATTTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTAATG
131 AGAGATAAAGACTTGCTATTTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTGATG
8257399 TTTGAA
196 TTTGAA
* *
8257405 ACTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATTGTTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-TATTTTTAATCCCACTT
*
8257470 TACTGCACCTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA
65 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA
8257535 GAGAGATAAAGACTTGCTATTTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTGAT
130 GAGAGATAAAGACTTGCTATTTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTGAT
8257600 GTTTGAA
195 GTTTGAA
* * *
8257607 GCTTTATCTTTCTCTTACTACAACTTCAGAGAGAAAAAGACTTGCTATTATTTTTAATCCCACTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-TATTTTTAATCCCACTT
*
8257672 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTATTACAACTTCA
65 TACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCA
* *
8257737 GAGAGATAAAGACTTGTTATTATTTTTAATCCCACTTTACTACAACTTCAAGAGGATAGGAATTG
130 GAGAGATAAAGACTTGCTA-T-TTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTG
8257802 ATGTTTGAA
193 ATGTTTGAA
*
8257811 GCTTCATCTTACTCTTACTACAACTTCAGAGAGATAAAGACTTGCTA-ATTTTTAATCCCACTTT
1 GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATATTTTTAATCCCACTTT
* *
8257875 ACTACAACTTCAAGAGGATAGGAGTTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAG
66 ACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAG
*
8257940 AGAGATAAATACTTGCTATTTTT
131 AGAGATAAAGACTTGCTATTTTT
8257963 ACTTGATCCA
Statistics
Matches: 881, Mismatches: 51, Indels: 37
0.91 0.05 0.04
Matches are distributed among these distances:
189 24 0.03
190 2 0.00
191 142 0.16
192 1 0.00
193 2 0.00
194 1 0.00
195 1 0.00
197 1 0.00
198 1 0.00
199 2 0.00
200 97 0.11
201 4 0.00
202 434 0.49
203 74 0.08
204 95 0.11
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (201 bp):
GCTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTTGCTATATTTTTAATCCCACTTT
ACTGCAACTTCAAGAGGATAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACAACTTCAG
AGAGATAAAGACTTGCTATTTTTTAATCCCACTTTACTGCAACTTCAAGAGGATAGGAATTGATG
TTTGAA
Found at i:8258232 original size:100 final size:101
Alignment explanation
Indices: 8258115--8258320 Score: 283
Period size: 100 Copynumber: 2.0 Consensus size: 101
8258105 GCTTAAATCT
* * *
8258115 TTCCTTTCATGCTTCTGAGGTACACA-GTCCGCCGTTGCGACTTAGACCTTTCCCTTTTGTATC-
1 TTCCTTTCAAGCTTCTGAGGTACA-AGGTCCGCCATTGCGACTTAAACCTTTCCCTTTTGTATCT
* *
8258178 T-TTGCGGTACTGGATCCTCCATTGCGGTATTAGATCC
65 TATTGCGGTACTGGATCCGCCATTACGG-ATTAGATCC
* *
8258215 TTCCTTTCAAGCTTCTGAGGTACAAGGTTCGCCATTGTGACTTAAACCTTTCCCTTTTGTATCTT
1 TTCCTTTCAAGCTTCTGAGGTACAAGGTCCGCCATTGCGACTTAAACCTTTCCCTTTTGTATCTT
* *
8258280 CATTGCGGTACTGGATCCGCCATTACGGCTTAGATCT
66 -ATTGCGGTACTGGATCCGCCATTACGGATTAGATCC
8258317 TTCC
1 TTCC
8258321 CTTTATGTCC
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
99 1 0.01
100 56 0.60
101 1 0.01
102 11 0.12
103 24 0.26
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (101 bp):
TTCCTTTCAAGCTTCTGAGGTACAAGGTCCGCCATTGCGACTTAAACCTTTCCCTTTTGTATCTT
ATTGCGGTACTGGATCCGCCATTACGGATTAGATCC
Found at i:8269370 original size:59 final size:60
Alignment explanation
Indices: 8269232--8269426 Score: 191
Period size: 59 Copynumber: 3.3 Consensus size: 60
8269222 GTTCAGGGTT
* * * * *
8269232 AAAAATGGAA-CTTTAGACACCCAGGGGTAAAATGGTAACTTTTAGAAAAAAGCAGGATC
1 AAAAATGGAATTTTTGGACATCCGGGGGTAAAATGGTAATTTTTAGAAAAAAGCAGGATC
* * * *
8269291 AAAAATAGAATTTTTGGACATCCGGGGGTAAAATGGTGATTTTTAGAAAAATTG-A-GATT
1 AAAAATGGAATTTTTGGACATCCGGGGGTAAAATGGTAATTTTTAGAAAAA-AGCAGGATC
* * * * *****
8269350 GAAAATGGAATTTTTGGACATTCGGGGGTAAAAGGGTAATTTTT-GCAGGTTTCAGGATC
1 AAAAATGGAATTTTTGGACATCCGGGGGTAAAATGGTAATTTTTAGAAAAAAGCAGGATC
8269409 AAAAATGGAATTTTTGGA
1 AAAAATGGAATTTTTGGA
8269427 AGTTTTAGGG
Statistics
Matches: 111, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
57 1 0.01
58 3 0.03
59 71 0.64
60 35 0.32
61 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (60 bp):
AAAAATGGAATTTTTGGACATCCGGGGGTAAAATGGTAATTTTTAGAAAAAAGCAGGATC
Found at i:8269423 original size:30 final size:29
Alignment explanation
Indices: 8269387--8269586 Score: 183
Period size: 30 Copynumber: 6.8 Consensus size: 29
8269377 GTAAAAGGGT
* * *
8269387 AATTTTTGCAGGTTTCAGGATCAAAAATGG
1 AATTTTTGAAAGTTTCAGGGT-AAAAATGG
* *
8269417 AATTTTTGGAAGTTTTAGGGTTAAAAATGG
1 AATTTTTGAAAGTTTCAGGG-TAAAAATGG
* *
8269447 AATTTTTAAAAG-TTCGAGGGTAAAAATGT
1 AATTTTTGAAAGTTTC-AGGGTAAAAATGG
* *
8269476 AATTTTTGAAAGTTTTAGGGTTAAAAATAG
1 AATTTTTGAAAGTTTCAGGG-TAAAAATGG
*
8269506 AATTTTTGGAAGTTT-AGGGGTAAAAATGG
1 AATTTTTGAAAGTTTCA-GGGTAAAAATGG
* *
8269535 AATTTTTGGAAG-TTCAAGGGT-AAAATGT
1 AATTTTTGAAAGTTTC-AGGGTAAAAATGG
* * *
8269563 AATTTTTGGAAGCTTCGGGGTAAA
1 AATTTTTGAAAGTTTCAGGGTAAA
8269587 GATATAATTT
Statistics
Matches: 145, Mismatches: 16, Indels: 19
0.81 0.09 0.11
Matches are distributed among these distances:
28 24 0.17
29 55 0.38
30 65 0.45
31 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.25, T:0.36
Consensus pattern (29 bp):
AATTTTTGAAAGTTTCAGGGTAAAAATGG
Found at i:8269470 original size:29 final size:29
Alignment explanation
Indices: 8269351--8269606 Score: 209
Period size: 29 Copynumber: 8.7 Consensus size: 29
8269341 ATTGAGATTG
**
8269351 AAAATGGAATTTTTGGACA-TTCGGGGGT-
1 AAAATGGAATTTTTGGA-AGTTCTAGGGTA
* * * *
8269379 AAAAGGGTAATTTTTGCAGGTT-TCAGGATCA
1 AAAATGG-AATTTTTGGAAGTTCT-AGGGT-A
*
8269410 AAAATGGAATTTTTGGAAGTTTTAGGGTTA
1 AAAATGGAATTTTTGGAAGTTCTAGGG-TA
** *
8269440 AAAATGGAATTTTTAAAAGTTCGAGGGTA
1 AAAATGGAATTTTTGGAAGTTCTAGGGTA
* * *
8269469 AAAATGTAATTTTTGAAAGTTTTAGGGTTA
1 AAAATGGAATTTTTGGAAGTTCTAGGG-TA
*
8269499 AAAATAGAATTTTTGGAAGTT-TAGGGGTA
1 AAAATGGAATTTTTGGAAGTTCTA-GGGTA
*
8269528 AAAATGGAATTTTTGGAAGTTCAAGGGT-
1 AAAATGGAATTTTTGGAAGTTCTAGGGTA
* *
8269556 AAAATGTAATTTTTGGAAGCTTC-GGGGTA
1 AAAATGGAATTTTTGGAAG-TTCTAGGGTA
* **
8269585 AAGATATAATTTTTGGACAGTT
1 AAAATGGAATTTTTGGA-AGTT
8269607 TAGAGACTTT
Statistics
Matches: 188, Mismatches: 27, Indels: 25
0.78 0.11 0.10
Matches are distributed among these distances:
28 28 0.15
29 87 0.46
30 65 0.35
31 8 0.04
ACGTcount: A:0.35, C:0.04, G:0.26, T:0.36
Consensus pattern (29 bp):
AAAATGGAATTTTTGGAAGTTCTAGGGTA
Found at i:8269472 original size:59 final size:59
Alignment explanation
Indices: 8269409--8269607 Score: 235
Period size: 59 Copynumber: 3.4 Consensus size: 59
8269399 TTTCAGGATC
**
8269409 AAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTAAAAGTTCGAGGGT
1 AAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGAGGGT
* * * *
8269468 AAAAATGTAATTTTTGAAAGTTTTAGGGTTAAAAATAGAATTTTTGGAAGTT-TAGGGGT
1 AAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGA-GGGT
** *
8269527 AAAAATGGAATTTTTGGAAGTTCAAGGG-T-AAAATGTAATTTTTGGAAGCTTCG-GGGT
1 AAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAG-TTCGAGGGT
* **
8269584 AAAGATATAATTTTTGGACAGTTT
1 AAAAATGGAATTTTTGGA-AGTTT
8269608 AGAGACTTTT
Statistics
Matches: 119, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
57 36 0.30
58 8 0.07
59 75 0.63
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.37
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTTTAGGGTTAAAAATGGAATTTTTGGAAGTTCGAGGGT
Found at i:8270861 original size:17 final size:17
Alignment explanation
Indices: 8270841--8270877 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8270831 AGTTTTTCTA
*
8270841 AAATTTAAACTTAATAT
1 AAATTTAAACTTAAAAT
*
8270858 AAATTTAAATTTAAAAT
1 AAATTTAAACTTAAAAT
8270875 AAA
1 AAA
8270878 AATTAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTTAAACTTAAAAT
Found at i:8270910 original size:20 final size:20
Alignment explanation
Indices: 8270871--8270917 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
8270861 TTTAAATTTA
**
8270871 AAATA-AAAATTAAATGTCC
1 AAATACAAAATTAAAAATCC
8270890 AAATACAAAATTAAAAATCC
1 AAATACAAAATTAAAAATCC
*
8270910 AATTACAA
1 AAATACAA
8270918 GTCCAAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.62, C:0.13, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATACAAAATTAAAAATCC
Found at i:8271616 original size:21 final size:21
Alignment explanation
Indices: 8271587--8271672 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 21
8271577 ATAATTTCAT
*
8271587 TAATGATAATAATATTAATAA
1 TAATTATAATAATATTAATAA
*
8271608 TAATTATAATAAATGCTTTAATAA
1 TAATTATAAT-AAT--ATTAATAA
* *
8271632 TAATAATAA-ATATTTTAATAA
1 TAATTATAATA-ATATTAATAA
* * *
8271653 TAAGTA-AATATTATTTATAA
1 TAATTATAATAATATTAATAA
8271673 AATAAAATAG
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
20 9 0.17
21 22 0.42
22 4 0.08
23 2 0.04
24 15 0.29
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.42
Consensus pattern (21 bp):
TAATTATAATAATATTAATAA
Found at i:8271628 original size:24 final size:22
Alignment explanation
Indices: 8271601--8271655 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
8271591 GATAATAATA
*
8271601 TTAATAATAATTATAATAAATGCT
1 TTAATAATAA--ATAATAAATACT
*
8271625 TTAATAAT-AATAATAAATATT
1 TTAATAATAAATAATAAATACT
8271646 TTAATAATAA
1 TTAATAATAA
8271656 GTAAATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 18 0.64
22 1 0.04
23 1 0.04
24 8 0.29
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (22 bp):
TTAATAATAAATAATAAATACT
Found at i:8271650 original size:18 final size:19
Alignment explanation
Indices: 8271629--8271678 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
8271619 AATGCTTTAA
8271629 TAATAATAATAAATATT-T
1 TAATAATAATAAATATTAT
8271647 TAATAATAAGTAAATATTAT
1 TAATAATAA-TAAATATTAT
*
8271667 TTATAA-AATAAA
1 TAATAATAATAAA
8271679 ATAGAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 13 0.45
19 10 0.34
20 6 0.21
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TAATAATAATAAATATTAT
Found at i:8272584 original size:29 final size:28
Alignment explanation
Indices: 8272545--8272765 Score: 181
Period size: 29 Copynumber: 7.6 Consensus size: 28
8272535 AAACTATCCA
*
8272545 AAAATTA-CATTTTGACCCCGATTTCACC
1 AAAATTACCATTTT-ACCCCAATTTCACC
*
8272573 AAAATTACCATTTTACCCCTAACTTTC-CA
1 AAAATTACCATTTTACCCC-AA-TTTCACC
8272602 AAAATT-CCATTTTTAACCCCAATTTCACC
1 AAAATTACCA-TTTT-ACCCCAATTTCACC
*
8272631 AAAATTACCATTTTACCCCCAAACCTT--CC
1 AAAATTACCATTTTA-CCCC-AA-TTTCACC
*
8272660 AAAATT-TCATTTTTGACCCCAATTTCACC
1 AAAATTACCA-TTTT-ACCCCAATTTCACC
8272689 AAAAATTACCATTTTACCCCCGAACTTT--CC
1 -AAAATTACCATTTTA-CCCC-AA-TTTCACC
* *
8272719 AAAATT-CCATTTTTAATCCCGATTTCACC
1 AAAATTACCA-TTTT-ACCCCAATTTCACC
8272748 AAAATTACCATTTTACCC
1 AAAATTACCATTTTACCC
8272766 TCGAACCTTC
Statistics
Matches: 159, Mismatches: 10, Indels: 48
0.73 0.05 0.22
Matches are distributed among these distances:
27 5 0.03
28 31 0.19
29 79 0.50
30 35 0.22
31 6 0.04
32 3 0.02
ACGTcount: A:0.33, C:0.31, G:0.02, T:0.33
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCAATTTCACC
Found at i:8272746 original size:117 final size:116
Alignment explanation
Indices: 8272545--8272812 Score: 380
Period size: 117 Copynumber: 2.3 Consensus size: 116
8272535 AAACTATCCA
* *
8272545 AAAATTACA-TTTTGACCCCGATTTCACCAAAATTACCATTTTACCCCTAACTTTCCAAAAATTC
1 AAAATTACATTTTTGACCCCAATTTCACCAAAATTACCATTTTACCCCGAACTTTCCAAAAATTC
8272609 CATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACCTTCC
66 CATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACCTTCC
*
8272660 AAAATTTCATTTTTGACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAACTTTCC-AAAAT
1 AAAATTACATTTTTGACCCCAATTTCACC-AAAATTACCATTTTA-CCCCGAACTTTCCAAAAAT
* * * *
8272724 TCCATTTTTAATCCCGATTTCACCAAAATTACCATTTTACCCTCGAACCTTCC
64 TCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACCTTCC
** * *
8272777 AAAATCCCATTTTTAACCTCGAATTTC-CCTAAAATT
1 AAAATTACATTTTTGACC-CCAATTTCACC-AAAATT
8272813 TCATTTTTAC
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
115 8 0.06
116 18 0.13
117 92 0.67
118 19 0.14
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (116 bp):
AAAATTACATTTTTGACCCCAATTTCACCAAAATTACCATTTTACCCCGAACTTTCCAAAAATTC
CATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACCTTCC
Found at i:8272778 original size:29 final size:29
Alignment explanation
Indices: 8272536--8272824 Score: 166
Period size: 29 Copynumber: 9.9 Consensus size: 29
8272526 TAGGTCCCTA
* *
8272536 AACTATCCAAAAATTA-CATTTTGACCCCG
1 AACTTTCC-AAAATTACCATTTTTACCCCG
*
8272565 -A-TTTCACCAAAATTACCA-TTTTACCCCT
1 AACTTT--CCAAAATTACCATTTTTACCCCG
8272593 AACTTTCCAAAAATT-CCATTTTTAACCCC-
1 AACTTTCC-AAAATTACCATTTTT-ACCCCG
*
8272622 AA-TTTCACCAAAATTACCA-TTTTACCCCCA
1 AACTTT--CCAAAATTACCATTTTTA-CCCCG
* *
8272652 AACCTTCCAAAATT-TCATTTTTGACCCC-
1 AACTTTCCAAAATTACCATTTTT-ACCCCG
8272680 AA-TTTCACCAAAAATTACCA-TTTTACCCCCG
1 AACTTT--CC-AAAATTACCATTTTTA-CCCCG
*
8272711 AACTTTCCAAAATT-CCATTTTTAATCCCG
1 AACTTTCCAAAATTACCATTTTT-ACCCCG
8272740 -A-TTTCACCAAAATTACCA-TTTTACCCTCG
1 AACTTT--CCAAAATTACCATTTTTACCC-CG
* * *
8272769 AACCTTCCAAAA-TCCCATTTTTAACCTCG
1 AACTTTCCAAAATTACCATTTTT-ACCCCG
*
8272798 AA-TTTCCCTAAAATT-TCATTTTTACCC
1 AACTTT-CC-AAAATTACCATTTTTACCC
8272825 TAGATAGTTA
Statistics
Matches: 209, Mismatches: 15, Indels: 72
0.71 0.05 0.24
Matches are distributed among these distances:
27 7 0.03
28 42 0.20
29 97 0.46
30 51 0.24
31 9 0.04
32 3 0.01
ACGTcount: A:0.33, C:0.31, G:0.02, T:0.34
Consensus pattern (29 bp):
AACTTTCCAAAATTACCATTTTTACCCCG
Found at i:8272819 original size:58 final size:58
Alignment explanation
Indices: 8272545--8272812 Score: 353
Period size: 58 Copynumber: 4.6 Consensus size: 58
8272535 AAACTATCCA
* * * * *
8272545 AAAATTACA-TTTTGACCCCGATTTCACCAAAATTACCATTTTA-CCCCTAACTTTCC
1 AAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCC
*
8272601 AAAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCAAACCTTCC
1 -AAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCC
* * *
8272660 AAAATTTCATTTTTGACCCCAATTTCACCAAAAATTACCATTTTACCCCCGAACTTTCC
1 AAAATTCCATTTTTAACCCCAATTTCACC-AAAATTACCATTTTACCCCCGAACCTTCC
* * *
8272719 AAAATTCCATTTTTAATCCCGATTTCACCAAAATTACCATTTTACCCTCGAACCTTCC
1 AAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCC
* *
8272777 AAAATCCCATTTTTAACCTCGAATTTC-CCTAAAATT
1 AAAATTCCATTTTTAACC-CCAATTTCACC-AAAATT
8272813 TCATTTTTAC
Statistics
Matches: 187, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
57 8 0.04
58 104 0.56
59 75 0.40
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (58 bp):
AAAATTCCATTTTTAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCC
Found at i:8285323 original size:200 final size:199
Alignment explanation
Indices: 8284973--8285803 Score: 1283
Period size: 200 Copynumber: 4.2 Consensus size: 199
8284963 ATGCGGTCAT
*
8284973 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAAAAATAAAATGGTTAGCTTCCTGATGAGATACA
1 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGAAATAAAATGGTTAGCTTCCTGATGAGATACA
* * * *
8285038 GAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAAAGAAGCGAATTAAAGCAACCGAGGCCG
66 GAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAGCGAGGCGG
* *
8285103 TCATCTTCCTGATAAGATACAGAGAAGAATACCAACTCAACGCTCAACGCGAGCAAATCTTCGAA
131 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGC-AATCTTCGAA
8285168 CCCAG
195 CCCAG
8285173 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGAAATAAAATGGTTAGCTTCCTGATGAGATACA
1 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGAAATAAAATGGTTAGCTTCCTGATGAGATACA
* *
8285238 GAGAAGTGGACCAAATTCGTCTTCTTGAGGAGATCTAGAGAAGCGAATTAAAACAAGCGAGGCGG
66 GAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAGCGAGGCGG
* * *
8285303 TCATCTTCCTGATGAGATACAAAGAAGAATACCAACTCAATGCTCAACACGAGCCAATTTTCGAA
131 TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAG-CAATCTTCGAA
*
8285368 CCTAG
195 CCCAG
* * *
8285373 CTTCCTGATGAGACATTGAGAAGCAGGTC-AGAGCAATAAAATGGTTAGCTTCCTGATGAGATAT
1 CTTCCTGATGAGACACTGAGAAGCAGGTCGA-AGAAATAAAATGGTTAGCTTCCTGATGAGATAC
* *
8285437 AGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCTAGAGAAGCGAATTAAAACAAGTGAGGCG
65 AGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAGCGAGGCG
*
8285502 GTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGTCAATTTTCGA
130 GTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAG-CAATCTTCGA
8285567 ACCCAG
194 ACCCAG
*
8285573 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGCAATAAAACT-GTTAGCTTCCTGATGAGATAC
1 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGAAATAAAA-TGGTTAGCTTCCTGATGAGATAC
* * * *
8285637 AGAGAAGTAGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAGACAATCAAGGCG
65 AGAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAGCGAGGCG
* * * * * * * *
8285702 GTCATCTTTCTGATGATACACTGAGAAGAAGACCAAATCAA-ACT-AACGCGAGCGAATCTTCGA
130 GTCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGC-AATCTTCGA
8285765 ACCCAG
194 ACCCAG
*
8285771 CTTCCTGATGAGACACTGAGAAGCAGATCGAAG
1 CTTCCTGATGAGACACTGAGAAGCAGGTCGAAG
8285804 TCAACGAAAC
Statistics
Matches: 586, Mismatches: 40, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
197 1 0.00
198 53 0.09
199 3 0.01
200 526 0.90
201 3 0.01
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (199 bp):
CTTCCTGATGAGACACTGAGAAGCAGGTCGAAGAAATAAAATGGTTAGCTTCCTGATGAGATACA
GAGAAGTGGACCAAATTCGTCTTCCTGAGGAGATCCAGAGAAGCGAATTAAAACAAGCGAGGCGG
TCATCTTCCTGATGAGATACAGAGAAGAATACCAACTCAACGCTCAACACGAGCAATCTTCGAAC
CCAG
Found at i:8286207 original size:17 final size:17
Alignment explanation
Indices: 8286187--8286223 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
8286177 AGTCTTTCTA
*
8286187 AAATTTAAACTTAATAT
1 AAATTTAAACTTAAAAT
*
8286204 AAATTTAAATTTAAAAT
1 AAATTTAAACTTAAAAT
8286221 AAA
1 AAA
8286224 AATTAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTTAAACTTAAAAT
Found at i:8286247 original size:20 final size:20
Alignment explanation
Indices: 8286217--8286263 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
8286207 TTTAAATTTA
*
8286217 AAATA-AAAATTAAATGTCC
1 AAATACAAAATTAAAAGTCC
8286236 AAATACAAAATTAAAAGTCC
1 AAATACAAAATTAAAAGTCC
*
8286256 AATTACAA
1 AAATACAA
8286264 GTCCAAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.60, C:0.13, G:0.04, T:0.23
Consensus pattern (20 bp):
AAATACAAAATTAAAAGTCC
Found at i:8288142 original size:29 final size:28
Alignment explanation
Indices: 8288102--8288263 Score: 131
Period size: 29 Copynumber: 5.6 Consensus size: 28
8288092 AAACTGTCCA
*
8288102 AAAATTA-TATTTTGACCCCGATTTCACC
1 AAAATTACCATTTT-ACCCCGATTTCACC
*
8288130 AAAATTACCATTTTACCCCCGAACCTT--CC
1 AAAATTACCATTTTA-CCCCG-A-TTTCACC
8288159 AAAATT-CCATTTTGACCCCGATTTCACC
1 AAAATTACCATTTT-ACCCCGATTTCACC
*
8288187 AAAAATTACCATTTTACCCTCAAACTTT--CC
1 -AAAATTACCATTTTACCC-C-GA-TTTCACC
*
8288217 AAAATT-CCATTTTCAACCCCAATTTCACC
1 AAAATTACCATTTT--ACCCCGATTTCACC
*
8288246 AAAATTATCATTTTACCC
1 AAAATTACCATTTTACCC
8288264 TCGAACCTTC
Statistics
Matches: 112, Mismatches: 5, Indels: 34
0.74 0.03 0.23
Matches are distributed among these distances:
26 2 0.02
27 4 0.04
28 35 0.31
29 44 0.39
30 21 0.19
31 3 0.03
32 3 0.03
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCGATTTCACC
Found at i:8288198 original size:58 final size:57
Alignment explanation
Indices: 8288110--8288287 Score: 275
Period size: 58 Copynumber: 3.1 Consensus size: 57
8288100 CAAAAATTAT
*
8288110 ATTTTGACCCCGATTTCACCAAAATTACCATTTTACCCCCGAACCTTCCAAAATTCC
1 ATTTTGACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACCTTCCAAAATTCC
* *
8288167 ATTTTGACCCCGATTTCACCAAAAATTACCATTTTACCCTCAAACTTTCCAAAATTCC
1 ATTTTGACCCCGATTTCACC-AAAATTACCATTTTACCCTCGAACCTTCCAAAATTCC
* * * *
8288225 ATTTTCAACCCCAATTTCACCAAAATTATCATTTTACCCTCGAACCTTCCAAAATCCC
1 ATTTT-GACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACCTTCCAAAATTCC
8288283 ATTTT
1 ATTTT
8288288 TAACCTCGAA
Statistics
Matches: 110, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
57 20 0.18
58 77 0.70
59 13 0.12
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (57 bp):
ATTTTGACCCCGATTTCACCAAAATTACCATTTTACCCTCGAACCTTCCAAAATTCC
Found at i:8288276 original size:29 final size:28
Alignment explanation
Indices: 8288128--8288287 Score: 127
Period size: 29 Copynumber: 5.6 Consensus size: 28
8288118 CCCGATTTCA
*
8288128 CCAAAATTACCATTTTACCCCCGAACCTT
1 CCAAAATTACCATTTTA-CCCCGAACTTT
8288157 CCAAAATT-CCATTTTGACCCCG-A-TTT
1 CCAAAATTACCATTTT-ACCCCGAACTTT
*
8288183 CACCAAAAATTACCATTTTACCCTCAAACTTT
1 --CC-AAAATTACCATTTTACCC-CGAACTTT
8288215 CCAAAATT-CCATTTTCAACCCC-AA-TTT
1 CCAAAATTACCATTTT--ACCCCGAACTTT
* *
8288242 CACCAAAATTATCATTTTACCCTCGAACCTT
1 --CCAAAATTACCATTTTACCC-CGAACTTT
*
8288273 CCAAAA-TCCCATTTT
1 CCAAAATTACCATTTT
8288288 TAACCTCGAA
Statistics
Matches: 109, Mismatches: 6, Indels: 33
0.74 0.04 0.22
Matches are distributed among these distances:
26 2 0.02
27 4 0.04
28 34 0.31
29 41 0.38
30 22 0.20
31 3 0.03
32 3 0.03
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.32
Consensus pattern (28 bp):
CCAAAATTACCATTTTACCCCGAACTTT
Found at i:8288337 original size:116 final size:115
Alignment explanation
Indices: 8288100--8288346 Score: 254
Period size: 116 Copynumber: 2.1 Consensus size: 115
8288090 CTAAACTGTC
* * *
8288100 CAAAAATTA-TATTTT-GACCCCGATTTCACCAAAATTACCATTTTACCCCCGAACCTTCCAAAA
1 CAAAAATTACCATTTTCAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCCAAAA
* * * *
8288163 TTCCATTTTGACCCCGATTTCACCAAAAATTACCATTTTACCCTCAAACTTT
66 TCCCATTTTAACCCCGATTTCACCAAAAATTA-CATTTTACCCCCAAAC-GT
* * *
8288215 CCAAAATT-CCATTTTCAACCCCAATTTCACCAAAATTATCATTTTACCCTCGAACCTTCCAAAA
1 CAAAAATTACCATTTTCAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCCAAAA
* * * * *
8288279 TCCCATTTTTAACCTCGAATTTC-CCTTAAAGTT-CATTTTTGCCCCCGATA-GT
66 TCCCA-TTTTAACCCCG-ATTTCACC-AAAAATTACA-TTTTACCCCC-AAACGT
8288331 CAAAAATTACCATTTT
1 CAAAAATTACCATTTT
8288347 GCCCTTGGGT
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
115 12 0.11
116 58 0.54
117 26 0.24
118 12 0.11
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (115 bp):
CAAAAATTACCATTTTCAACCCCAATTTCACCAAAATTACCATTTTACCCCCGAACCTTCCAAAA
TCCCATTTTAACCCCGATTTCACCAAAAATTACATTTTACCCCCAAACGT
Found at i:8291087 original size:44 final size:44
Alignment explanation
Indices: 8291024--8291111 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
8291014 GCGTAGAATG
8291024 TAGGGAATGGTTAGTTGGTCAGGATTGCTTTAGATGATTGGATT
1 TAGGGAATGGTTAGTTGGTCAGGATTGCTTTAGATGATTGGATT
*
8291068 TAGGGAATGGTTAGTTGGTCGGGATTGCTTTAGATGATTGGATT
1 TAGGGAATGGTTAGTTGGTCAGGATTGCTTTAGATGATTGGATT
8291112 CCCTCTGTTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.22, C:0.05, G:0.35, T:0.39
Consensus pattern (44 bp):
TAGGGAATGGTTAGTTGGTCAGGATTGCTTTAGATGATTGGATT
Found at i:8293047 original size:19 final size:19
Alignment explanation
Indices: 8293023--8293065 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8293013 AAACATAAAT
8293023 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
8293042 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
8293061 TAAAT
1 TAAAT
8293066 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:8294497 original size:4 final size:4
Alignment explanation
Indices: 8294488--8294539 Score: 63
Period size: 4 Copynumber: 12.8 Consensus size: 4
8294478 TCCTGGACAA
8294488 AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AAGAT AGAA- AAAT AAA- AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AA-AT A-AAT AAAT AAAT AAAT
8294537 AAA
1 AAA
8294540 AATAATTGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
3 5 0.12
4 29 0.67
5 8 0.19
6 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:8294541 original size:26 final size:26
Alignment explanation
Indices: 8294486--8294544 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
8294476 TTTCCTGGAC
8294486 AAAAATAAATAAATAAATAAATAAAT
1 AAAAATAAATAAATAAATAAATAAAT
8294512 -AAAATAAGATAGAA-AAATAAA-AAAT
1 AAAAATAA-ATA-AATAAATAAATAAAT
8294537 AAAAATAA
1 AAAAATAA
8294545 TTGGGTTGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
25 11 0.37
26 17 0.57
27 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (26 bp):
AAAAATAAATAAATAAATAAATAAAT
Found at i:8300992 original size:19 final size:19
Alignment explanation
Indices: 8300968--8301010 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8300958 AAACATAAAT
8300968 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
8300987 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
8301006 TAAAT
1 TAAAT
8301011 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:8304371 original size:104 final size:103
Alignment explanation
Indices: 8304181--8304372 Score: 235
Period size: 104 Copynumber: 1.8 Consensus size: 103
8304171 ACATTGGACC
* * *
8304181 TTTTGACGCGAAATGAAATGACACCCAAGCACTCCATCCTGATTACTCAGCCCAACATGCTCTCA
1 TTTTGACGCGAAATGAAATGACAACCAAGCACTCCACCCCGATTACTCAGCCCAACA-GCTCTCA
* *
8304246 ATTTTTTTATTCTCTTTTTTTTGTAGAATGTATTAGCCA
65 ATTTATTTATTATCTTTTTTTTGTAGAATGTATTAGCCA
* * * *
8304285 TTTTGACGC-AAAGTGAAATGACAACCAAGCACTCCACCCCGGTTACTCAGTCTAACA-CATTTC
1 TTTTGACGCGAAA-TGAAATGACAACCAAGCACTCCACCCCGATTACTCAGCCCAACAGC-TCTC
*
8304348 GAATTTATTTATTATTTTCTTTTTT
64 -AATTTATTTATTATCTT-TTTTTT
8304373 TATTCGGGTT
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
102 1 0.01
103 6 0.08
104 61 0.82
105 6 0.08
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (103 bp):
TTTTGACGCGAAATGAAATGACAACCAAGCACTCCACCCCGATTACTCAGCCCAACAGCTCTCAA
TTTATTTATTATCTTTTTTTTGTAGAATGTATTAGCCA
Found at i:8311395 original size:19 final size:19
Alignment explanation
Indices: 8311371--8311413 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8311361 AAACATAAAT
8311371 TAAATACAAAT-TTAAATAA
1 TAAATA-AAATCTTAAATAA
* *
8311390 TAAATAATATCTTAAATAT
1 TAAATAAAATCTTAAATAA
8311409 TAAAT
1 TAAAT
8311414 CCTAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 18 0.86
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAATAAAATCTTAAATAA
Found at i:8312832 original size:14 final size:14
Alignment explanation
Indices: 8312815--8312853 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
8312805 TTCAATATTA
*
8312815 TTAAACATATATAT
1 TTAATCATATATAT
* *
8312829 TTAATTATCTATAT
1 TTAATCATATATAT
8312843 TTAATCATATA
1 TTAATCATATA
8312854 ATATATCATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.49
Consensus pattern (14 bp):
TTAATCATATATAT
Found at i:8315512 original size:22 final size:24
Alignment explanation
Indices: 8315487--8315532 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8315477 TCGGCATGGC
8315487 TTGTTCATA-TTAA-TTTTTAATA
1 TTGTTCATATTTAATTTTTTAATA
**
8315509 TTGTTTTTATTTAATTTTTTAATA
1 TTGTTCATATTTAATTTTTTAATA
8315533 ATATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 4 0.20
24 9 0.45
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (24 bp):
TTGTTCATATTTAATTTTTTAATA
Found at i:8319374 original size:30 final size:31
Alignment explanation
Indices: 8319332--8319418 Score: 135
Period size: 30 Copynumber: 2.9 Consensus size: 31
8319322 TTTGACCCTC
8319332 AGTTTT-TAAAAATTCAAATTTGACCCCTAA
1 AGTTTTCTAAAAATTCAAATTTGACCCCTAA
*
8319362 A-TTTTCTAAAAATTCAAATTTAACCCCTAA
1 AGTTTTCTAAAAATTCAAATTTGACCCCTAA
*
8319392 AGTTTTC-AAAAATTAAAATTTGACCCC
1 AGTTTTCTAAAAATTCAAATTTGACCCC
8319419 GTTTTAATGT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
29 4 0.08
30 43 0.83
31 5 0.10
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.36
Consensus pattern (31 bp):
AGTTTTCTAAAAATTCAAATTTGACCCCTAA
Found at i:8322902 original size:8 final size:8
Alignment explanation
Indices: 8322889--8322929 Score: 55
Period size: 8 Copynumber: 4.8 Consensus size: 8
8322879 TTCTTGCATT
8322889 TGCATTCA
1 TGCATTCA
8322897 TGCATTCA
1 TGCATTCA
8322905 TGCATTCA
1 TGCATTCA
8322913 TTGCATTTTCA
1 -TGCA--TTCA
8322924 TGCATT
1 TGCATT
8322930 AAAATTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 18 0.60
9 4 0.13
10 4 0.13
11 4 0.13
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (8 bp):
TGCATTCA
Found at i:8331097 original size:50 final size:49
Alignment explanation
Indices: 8331022--8331161 Score: 190
Period size: 50 Copynumber: 2.8 Consensus size: 49
8331012 ATAGAACGAT
* *
8331022 AAATCTTTTACCCCTAAAGCTGTAGAGGTGCAGATTGAAACCGCAATGGC
1 AAATCTTATACACCTAAAGCTGTAGAGG-GCAGATTGAAACCGCAATGGC
* *
8331072 AAATCTTATACACCTAAAGCTGTAGAGGGGCAGAATGAAGCCGCAATGGC
1 AAATCTTATACACCTAAAGCTGTAGA-GGGCAGATTGAAACCGCAATGGC
* * *
8331122 AAATCTCATTCACCTAAAGCTATAGAGGGACAGATTGAAA
1 AAATCTTATACACCTAAAGCTGTAGAGGG-CAGATTGAAA
8331162 TCATAAGGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 3 0.04
50 74 0.94
51 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.21
Consensus pattern (49 bp):
AAATCTTATACACCTAAAGCTGTAGAGGGCAGATTGAAACCGCAATGGC
Found at i:8331281 original size:40 final size:40
Alignment explanation
Indices: 8331215--8331467 Score: 212
Period size: 40 Copynumber: 6.4 Consensus size: 40
8331205 AGTTACAACC
* *
8331215 TCCAATCTCTTACCCTAACCAGAGGGCAGATTGAAGACCA
1 TCCAATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
* * *
8331255 TCCGATCTTTTACACTAATCATAGGGCAGATTGAAGACCA
1 TCCAATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
* * *
8331295 TCCAATCTTTTACCCTAATCATAGGACAGATTGAAGACAA
1 TCCAATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
* * *
8331335 TCCAATCTCTTACCCCAA-C-TATGAGGTAGATT-AA-AGCA
1 TCCAATCTCTTACCCTAATCATA-G-GGCAGATTGAAGACCA
* * * * * *
8331373 GTCTAGTCTTTTACCCTAACCAGAGGACAGATTGAAGACCA
1 -TCCAATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
** * * *
8331414 T-CAGATCTCTTACCCCGACCATGGGGCAGATTGAA-ACAA
1 TCCA-ATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
* *
8331453 TCTAATCTTTTACCC
1 TCCAATCTCTTACCC
8331468 CTAAAGTTAT
Statistics
Matches: 170, Mismatches: 34, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
38 4 0.02
39 39 0.23
40 123 0.72
41 4 0.02
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (40 bp):
TCCAATCTCTTACCCTAATCATAGGGCAGATTGAAGACCA
Found at i:8331400 original size:79 final size:78
Alignment explanation
Indices: 8331218--8331467 Score: 265
Period size: 79 Copynumber: 3.2 Consensus size: 78
8331208 TACAACCTCC
* * * * * *
8331218 AATCTCTTACCCTAACCAGAGGGCAGATTGAAGACCATCCGATCTTTTACACTAA-TCAT-AGGG
1 AATCTTTTACCCTAACCAGAGGACAGATTGAAGACCATCCAATCTCTTACCCCAACT-ATGA-GG
*
8331281 CAGATTGAAGACCATCC
64 CAGATTGAA-A-CATCT
* * * *
8331298 AATCTTTTACCCTAATCATAGGACAGATTGAAGACAATCCAATCTCTTACCCCAACTATGAGGTA
1 AATCTTTTACCCTAACCAGAGGACAGATTGAAGACCATCCAATCTCTTACCCCAACTATGAGGCA
8331363 GATT-AAAGCAGTCT
66 GATTGAAA-CA-TCT
* * * *
8331377 AGTCTTTTACCCTAACCAGAGGACAGATTGAAGACCAT-CAGATCTCTTACCCCGACCATGGGGC
1 AATCTTTTACCCTAACCAGAGGACAGATTGAAGACCATCCA-ATCTCTTACCCCAACTATGAGGC
8331441 AGATTGAAACAATCT
65 AGATTGAAAC-ATCT
8331456 AATCTTTTACCC
1 AATCTTTTACCC
8331468 CTAAAGTTAT
Statistics
Matches: 143, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
78 5 0.03
79 77 0.54
80 59 0.41
81 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (78 bp):
AATCTTTTACCCTAACCAGAGGACAGATTGAAGACCATCCAATCTCTTACCCCAACTATGAGGCA
GATTGAAACATCT
Found at i:8332003 original size:11 final size:12
Alignment explanation
Indices: 8331979--8332008 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
8331969 CAATCCAAAT
8331979 TTTATTATTTTA
1 TTTATTATTTTA
8331991 TTTATTA-TTTA
1 TTTATTATTTTA
8332002 TTTATTA
1 TTTATTA
8332009 AATAAATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTATTATTTTA
Found at i:8332989 original size:28 final size:28
Alignment explanation
Indices: 8332934--8332992 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
8332924 GGGTTTTGTC
*
8332934 TTTTAATGGAAAGAACAAGTTATATTTT
1 TTTTAATGGAAAGAACAAGATATATTTT
*
8332962 TTTTAATGGAAATAATCAA-ATAT-TTTT
1 TTTTAATGGAAAGAA-CAAGATATATTTT
8332989 TTTT
1 TTTT
8332993 GTTATGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 8 0.29
28 17 0.61
29 3 0.11
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.49
Consensus pattern (28 bp):
TTTTAATGGAAAGAACAAGATATATTTT
Found at i:8333316 original size:30 final size:29
Alignment explanation
Indices: 8333267--8333419 Score: 177
Period size: 30 Copynumber: 5.1 Consensus size: 29
8333257 TCATTTTTTT
*
8333267 ACCCCAAAGTTTT-CAAAAATTCAAATTTA
1 ACCCTAAA-TTTTCCAAAAATTCAAATTTA
*
8333296 ACCTCTAAATTTTCCAAAAATTCAAATTTC
1 ACC-CTAAATTTTCCAAAAATTCAAATTTA
*
8333326 ACCCTCAAATTTTCCAAAAATTCAAA-TCA
1 ACCCT-AAATTTTCCAAAAATTCAAATTTA
8333355 GATCCCTAAATTTTCCAAAAATTCAAATTTA
1 -A-CCCTAAATTTTCCAAAAATTCAAATTTA
* *
8333386 ACTCCTAAAGTTTT-CAAAAATTAAAATTTG
1 AC-CCTAAA-TTTTCCAAAAATTCAAATTTA
8333416 ACCC
1 ACCC
8333420 CGTTTTAATG
Statistics
Matches: 109, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
29 13 0.12
30 86 0.79
31 10 0.09
ACGTcount: A:0.42, C:0.22, G:0.03, T:0.33
Consensus pattern (29 bp):
ACCCTAAATTTTCCAAAAATTCAAATTTA
Found at i:8333349 original size:60 final size:61
Alignment explanation
Indices: 8333267--8333414 Score: 200
Period size: 60 Copynumber: 2.5 Consensus size: 61
8333257 TCATTTTTTT
*
8333267 ACCC-CAAAGTTTTCAAAAATTCAAATTTA-A-CCTCTAAATTTTCCAAAAATTCAAATTTC
1 ACCCTCAAAGTTTTCAAAAATTCAAATTTAGATCC-CTAAATTTTCCAAAAATTCAAATTTA
*
8333326 ACCCTCAAA-TTTTCCAAAAATTCAAA-TCAGATCCCTAAATTTTCCAAAAATTCAAATTTA
1 ACCCTCAAAGTTTT-CAAAAATTCAAATTTAGATCCCTAAATTTTCCAAAAATTCAAATTTA
*
8333386 ACTCCT-AAAGTTTTCAAAAATTAAAATTT
1 AC-CCTCAAAGTTTTCAAAAATTCAAATTT
8333415 GACCCCGTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 12
0.83 0.04 0.13
Matches are distributed among these distances:
59 10 0.13
60 58 0.74
61 10 0.13
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (61 bp):
ACCCTCAAAGTTTTCAAAAATTCAAATTTAGATCCCTAAATTTTCCAAAAATTCAAATTTA
Found at i:8340252 original size:20 final size:21
Alignment explanation
Indices: 8340213--8340264 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 21
8340203 ATTAATTATT
8340213 TATA-AAATT-TAA-TTAGAA
1 TATATAAATTATAATTTAGAA
8340231 TATATAAATTATAATTTA-AA
1 TATATAAATTATAATTTAGAA
8340251 TA-ATTAAA-TATAAT
1 TATA-TAAATTATAAT
8340265 AATTAAATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
20 11 0.37
21 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
TATATAAATTATAATTTAGAA
Found at i:8341821 original size:26 final size:25
Alignment explanation
Indices: 8341788--8341837 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
8341778 ATTTTCAAAT
8341788 AAATAATTAATAAAATCAATTGATA
1 AAATAATTAATAAAATCAATTGATA
* *
8341813 AAATCAATTAATAGAATTAATTGAT
1 AAAT-AATTAATAAAATCAATTGAT
8341838 CAAACCATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AAATAATTAATAAAATCAATTGATA
Found at i:8341834 original size:13 final size:13
Alignment explanation
Indices: 8341788--8341825 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
8341778 ATTTTCAAAT
8341788 AAAT-AATTAATA
1 AAATCAATTAATA
*
8341800 AAATCAATTGATA
1 AAATCAATTAATA
8341813 AAATCAATTAATA
1 AAATCAATTAATA
8341826 GAATTAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 4 0.17
13 19 0.83
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (13 bp):
AAATCAATTAATA
Found at i:8351083 original size:108 final size:108
Alignment explanation
Indices: 8350889--8351088 Score: 292
Period size: 108 Copynumber: 1.9 Consensus size: 108
8350879 TAAATCAGCG
* ** ***
8350889 AACTCTTAATGAATTGTTCATGATCGTAAATCAATGAACTGAAACTGTGATCGTAAATCAGTGAG
1 AACTCTTAATGAAGTGTTCATGATCGTAAATCAAAAAACTGAAACTGTGATCGTAAATCAACAAG
** **
8350954 CTTTAAAAAATGTTAGTTGTGATTGTAAATCGGAGAACTGTTA
66 CTTTAAAAAATGACAAATGTGATTGTAAATCGGAGAACTGTTA
**
8350997 AACTCTTAATGAAGTGTTCATGATCGTAAATCAAAAAACTGAAGTTGTGATCGTAAATCAACAAG
1 AACTCTTAATGAAGTGTTCATGATCGTAAATCAAAAAACTGAAACTGTGATCGTAAATCAACAAG
8351062 CTTTAAAAAATGACAAATGTGATTGTA
66 CTTTAAAAAATGACAAATGTGATTGTA
8351089 CATCAGTGAA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
108 80 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.32
Consensus pattern (108 bp):
AACTCTTAATGAAGTGTTCATGATCGTAAATCAAAAAACTGAAACTGTGATCGTAAATCAACAAG
CTTTAAAAAATGACAAATGTGATTGTAAATCGGAGAACTGTTA
Found at i:8354287 original size:61 final size:58
Alignment explanation
Indices: 8354216--8354388 Score: 168
Period size: 61 Copynumber: 2.9 Consensus size: 58
8354206 TTTGAATTTT
* *
8354216 AAAAAATTTAGGTACCAAATTAGGAAAAAAATATCAAGTTCAAATATCAAATTGGATTCAA
1 AAAAAATTTAGGTACCAAATTA-GAAAAAAATGTCAAGTTCAAATA-CAAATT-GAGTCAA
* * * * *
8354277 AAAAACTTTAGGTACTAAATTAAAGAAAAAATGTTAAGTTCAGATACTAAATTGAGTCAAA
1 AAAAAATTTAGGTACCAAATTAGA-AAAAAATGTCAAGTTCAAATAC-AAATTGAGTC-AA
* * * *
8354338 AAAAAAATTAAGTATCAAATTA-AGAAAAAATGTCAAATTCAAATACCAAAT
1 AAAAAATTTAGGTACCAAATTAGA-AAAAAATGTCAAGTTCAAATA-CAAAT
8354389 ATTATATTAA
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
60 30 0.32
61 63 0.68
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.26
Consensus pattern (58 bp):
AAAAAATTTAGGTACCAAATTAGAAAAAAATGTCAAGTTCAAATACAAATTGAGTCAA
Found at i:8363573 original size:17 final size:17
Alignment explanation
Indices: 8363553--8363601 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
8363543 AAAAATTTCA
* *
8363553 AAAATTTCAAAAAAGGG
1 AAAATTTAAAAAAAGAG
**
8363570 AAAAAATAAAAAAAGAG
1 AAAATTTAAAAAAAGAG
8363587 AAAATTCTAAAAAAA
1 AAAATT-TAAAAAAA
8363602 TTAAAAATAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.71, C:0.04, G:0.10, T:0.14
Consensus pattern (17 bp):
AAAATTTAAAAAAAGAG
Found at i:8363787 original size:24 final size:23
Alignment explanation
Indices: 8363754--8363802 Score: 71
Period size: 24 Copynumber: 2.1 Consensus size: 23
8363744 TAACCTAGAC
*
8363754 AATTTTTTTTTTATTTTCTTGAA
1 AATTTTTTTTTTAATTTCTTGAA
*
8363777 AATTTTCTTTTTTAATTTCTTTAA
1 AATTTT-TTTTTTAATTTCTTGAA
8363801 AA
1 AA
8363803 GTTTATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (23 bp):
AATTTTTTTTTTAATTTCTTGAA
Found at i:8364156 original size:32 final size:32
Alignment explanation
Indices: 8364076--8364158 Score: 123
Period size: 32 Copynumber: 2.6 Consensus size: 32
8364066 CAGATAAAAA
8364076 TAATCAATTT-AGATATTAGGTGTTATAAAGAT
1 TAATCAATTTGAG-TATTAGGTGTTATAAAGAT
*
8364108 TAATCAATTTGAGTATTAGGTGTTATTAAGAT
1 TAATCAATTTGAGTATTAGGTGTTATAAAGAT
* *
8364140 TAATTAATTTGGGTATTAG
1 TAATCAATTTGAGTATTAG
8364159 ATATTTGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
32 45 0.96
33 2 0.04
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.43
Consensus pattern (32 bp):
TAATCAATTTGAGTATTAGGTGTTATAAAGAT
Found at i:8365811 original size:299 final size:304
Alignment explanation
Indices: 8365160--8365861 Score: 892
Period size: 306 Copynumber: 2.3 Consensus size: 304
8365150 TATACATGTG
* * * * *
8365160 GAAATCACATATTTAAAACACAACA-ATGTGTTCAAAAATAACATAAAATAAATA-ATGAAACA-
1 GAAATCACGTATTTAGAACACAA-ATATGTGTTTAAAAACAACATACAATAAA-AGATGAAA-AG
* *
8365222 TATTGTTTGAAACTAATTAATAATAACACAT-AAGATATGTACGATATTAAAATGAAAAAATATA
63 TA-TGTTTGGAACTAATTAATAGTAACACATGAA-ATATGTACGATATTAAAATGAAAAAATATA
* *
8365286 TATTAAATTGTAAGTAAAACCAAATTTAAACACAAAAATACATTAGGTTAAGAATACTAAATGAA
126 TATTAAATTGTAAGTAAAACCAAATTTAAACACAAAAATACATCAGATTAAGAATACTAAATGAA
* * * *
8365351 TACAATTATTTATCATTGTTTTATCATCAATCTTGAGTTGGTGTTGTATTAATTCATGACACTAA
191 TACAATTATATATCATTGTTTTATCATCAATCCTGAGTTAGTGTCGTATTAATTCATGACACTAA
* * * * *
8365416 ATCAACAATATTATTAATACTAGAAATCTTATCACACGCGTACACATGT
256 ATCAACAACATTATTAATACTAGAAACCTTATCACACACATACACATAT
* * *
8365465 GCAAATCATGTATTTAGAACACAGATGTGTGTTTAAAAACAACATACAATAAAAGATGAAAAGTA
1 G-AAATCACGTATTTAGAACACAAATATGTGTTTAAAAACAACATACAATAAAAGATGAAAAGTA
*
8365530 TGGTTTGGAACTAATTAATAGTAACAAATGAAATATGTACGATATTAAAAT-AAAAAA-ATATAT
65 T-GTTTGGAACTAATTAATAGTAACACATGAAATATGTACGATATTAAAATGAAAAAATATATAT
* * * *
8365593 TAAATTGTGAGTAAAACGAAATTTAAACA-AAAAA-A-ATCAGATTAAGAATGCTAAATGAATAG
129 TAAATTGTAAGTAAAACCAAATTTAAACACAAAAATACATCAGATTAAGAATACTAAATGAATAC
* * **
8365655 AATTGTATATCATTGTTTTGTCATCAATCCTGAGTTAGTGTCG-AGTTAATTTGTGACACTAAAT
194 AATTATATATCATTGTTTTATCATCAATCCTGAGTTAGTGTCGTA-TTAATTCATGACACTAAAT
* * * *
8365719 CAATAACATT-TT-TTACTAGAAACCTTATCACACACATATACGTAT
258 CAACAACATTATTAATACTAGAAACCTTATCACACACATACACATAT
*
8365764 AGAAATCACGTATTTAGAACACAAATATGTGTTTAAAAACAACATACAATAAATGATGAAAAGTA
1 -GAAATCACGTATTTAGAACACAAATATGTGTTTAAAAACAACATACAATAAAAGATGAAAAGTA
* *
8365829 --TTTAGAACTAATTAATAGTAACGCATGAAATAT
65 TGTTTGGAACTAATTAATAGTAACACATGAAATAT
8365862 ATATAATGTT
Statistics
Matches: 348, Mismatches: 41, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
296 30 0.09
299 85 0.24
300 4 0.01
301 85 0.24
302 1 0.00
303 5 0.01
304 33 0.09
305 11 0.03
306 92 0.26
307 2 0.01
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (304 bp):
GAAATCACGTATTTAGAACACAAATATGTGTTTAAAAACAACATACAATAAAAGATGAAAAGTAT
GTTTGGAACTAATTAATAGTAACACATGAAATATGTACGATATTAAAATGAAAAAATATATATTA
AATTGTAAGTAAAACCAAATTTAAACACAAAAATACATCAGATTAAGAATACTAAATGAATACAA
TTATATATCATTGTTTTATCATCAATCCTGAGTTAGTGTCGTATTAATTCATGACACTAAATCAA
CAACATTATTAATACTAGAAACCTTATCACACACATACACATAT
Found at i:8367455 original size:20 final size:20
Alignment explanation
Indices: 8367430--8367467 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8367420 TTAATGCTGA
* *
8367430 TTTGTTTTTTTTTATTATAT
1 TTTGTTTGTTTTAATTATAT
8367450 TTTGTTTGTTTTAATTAT
1 TTTGTTTGTTTTAATTAT
8367468 TGTTATAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (20 bp):
TTTGTTTGTTTTAATTATAT
Found at i:8368015 original size:6 final size:6
Alignment explanation
Indices: 8367995--8368053 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
8367985 TTAAAGGGGT
* * *
8367995 TTTAAA TTT-AT TTTAAA TTTAAA TTTACTTA TTTAAA TTT-AC TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTA--AA TTTAAA TTTAAA TTTAAA
*
8368043 TTTAAG TTTAA
1 TTTAAA TTTAA
8368054 TCAAATTTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 8 0.19
6 29 0.69
8 5 0.12
ACGTcount: A:0.39, C:0.03, G:0.02, T:0.56
Consensus pattern (6 bp):
TTTAAA
Found at i:8368030 original size:14 final size:14
Alignment explanation
Indices: 8368011--8368038 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8368001 TTTATTTTAA
8368011 ATTTAAATTTACTT
1 ATTTAAATTTACTT
8368025 ATTTAAATTTACTT
1 ATTTAAATTTACTT
8368039 TAAATTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTAAATTTACTT
Found at i:8368876 original size:16 final size:17
Alignment explanation
Indices: 8368844--8368881 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
8368834 TAGCATTAAA
*
8368844 TATTAATCATTAATAAT
1 TATTAATCATAAATAAT
8368861 TATTAA-CATAAATAAT
1 TATTAATCATAAATAAT
*
8368877 AATTA
1 TATTA
8368882 TAATAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
TATTAATCATAAATAAT
Found at i:8369844 original size:161 final size:161
Alignment explanation
Indices: 8369577--8369917 Score: 540
Period size: 161 Copynumber: 2.1 Consensus size: 161
8369567 ACTTTTTTTA
8369577 TTGTTTTAATTTAGTCCTTTTCATACTTTTAATTATTTTTAATTTGGCCCAGTAATTTTGTTTAA
1 TTGTTTTAATTTAGTCCTTTTCATACTTTTAATTATTTTTAATTTGGCCCAGTAATTTTGTTTAA
* * * *
8369642 TTTTCAATTTGATCTTTTAACTTTTCGAATGCACCAGAGGCTACCACGTGGCACTATTTTGGCTG
66 TTTTCAATTTGATCCTTTAACTTTTCGAATGCACCAGAGGCTACCACGTGGCACCATTTCGACTG
* *
8369707 ATTTGTGTAATTAGTCCCTTTTATTTTTAAT
131 ATTGGTGCAATTAGTCCCTTTTATTTTTAAT
* * *
8369738 TTGTTTTAATTTAGTCTTTTTCGTACTTTTAATTATTTTTAATTTGGCCCAGTAATTTTGTTTAC
1 TTGTTTTAATTTAGTCCTTTTCATACTTTTAATTATTTTTAATTTGGCCCAGTAATTTTGTTTAA
* * *
8369803 TTTTCAATTTGATCCTTTGACATTTT-GAATGCACGAGAGGCTGCCACGTGGCACCATTTCGACT
66 TTTTCAATTTGATCCTTTAAC-TTTTCGAATGCACCAGAGGCTACCACGTGGCACCATTTCGACT
*
8369867 TATTGGTGCAATTAGTCCCTTTTATTTTTAAT
130 GATTGGTGCAATTAGTCCCTTTTATTTTTAAT
*
8369899 TTGTTTTAATTTGGTCCTT
1 TTGTTTTAATTTAGTCCTT
8369918 AAATCAATTT
Statistics
Matches: 164, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
161 160 0.98
162 4 0.02
ACGTcount: A:0.21, C:0.15, G:0.14, T:0.50
Consensus pattern (161 bp):
TTGTTTTAATTTAGTCCTTTTCATACTTTTAATTATTTTTAATTTGGCCCAGTAATTTTGTTTAA
TTTTCAATTTGATCCTTTAACTTTTCGAATGCACCAGAGGCTACCACGTGGCACCATTTCGACTG
ATTGGTGCAATTAGTCCCTTTTATTTTTAAT
Found at i:8370129 original size:59 final size:59
Alignment explanation
Indices: 8370057--8370543 Score: 719
Period size: 59 Copynumber: 8.3 Consensus size: 59
8370047 CCTAAACTAT
* *
8370057 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAACTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
8370116 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAACTCTA-TTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* *
8370174 TCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * *
8370233 CC-AAAATTACCATTTCACCCCGAAACTTTTCAAAATTTCATTTTTAACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * **
8370291 CCAAAAATTACCATTTTA-CCCTCGAACTTTCCAAAATTCCATTTTTGACCTTGATTTCA
1 CCAAAAATTACCATTTTACCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
8370350 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCAATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * *
8370409 CCAAAACTTACCATTTTACCCCTAAACTTTCCAAAATTTCATTTTTAACCCCGATTTTA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* ** *
8370468 CCAAAAATTACCATTTTACCCTTAAACTTTCCAAAATTCCATTTTCGACCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*
8370527 CAAAAAATTACCATTTT
1 CCAAAAATTACCATTTT
8370544 GCCCTCGTGA
Statistics
Matches: 387, Mismatches: 37, Indels: 8
0.90 0.09 0.02
Matches are distributed among these distances:
58 110 0.28
59 273 0.71
60 4 0.01
ACGTcount: A:0.34, C:0.29, G:0.02, T:0.35
Consensus pattern (59 bp):
CCAAAAATTACCATTTTACCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:8370586 original size:28 final size:28
Alignment explanation
Indices: 8370530--8370599 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
8370520 GATTTCACAA
* *
8370530 AAAATTACCATTTTGCCCTCGTGAGTCC
1 AAAACTACCATTTTGCCCTCGGGAGTCC
*
8370558 AAAAGTACCATTTTGCCCTCGGGTA-TCC
1 AAAACTACCATTTTGCCCTCGGG-AGTCC
*
8370586 AAAACTCCCATTTT
1 AAAACTACCATTTT
8370600 CAACTCTGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (28 bp):
AAAACTACCATTTTGCCCTCGGGAGTCC
Found at i:8384344 original size:13 final size:13
Alignment explanation
Indices: 8384326--8384351 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8384316 ATTAAACGTA
8384326 TGATAATGAAAAG
1 TGATAATGAAAAG
8384339 TGATAATGAAAAG
1 TGATAATGAAAAG
8384352 GAGAGTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23
Consensus pattern (13 bp):
TGATAATGAAAAG
Found at i:8391964 original size:48 final size:48
Alignment explanation
Indices: 8391884--8391985 Score: 168
Period size: 48 Copynumber: 2.1 Consensus size: 48
8391874 ATAAGACAAC
** *
8391884 ATTTTATTTTGACTTTAAAAGGGGCAGTTGATATACAAAAAGATTAGA
1 ATTTTATTTTGACTTTAAAAGGAACAGCTGATATACAAAAAGATTAGA
*
8391932 ATTTTATTTTGGCTTTAAAAGGAACAGCTGATATACAAAAAGATTAGA
1 ATTTTATTTTGACTTTAAAAGGAACAGCTGATATACAAAAAGATTAGA
8391980 ATTTTA
1 ATTTTA
8391986 AAAAGAAGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (48 bp):
ATTTTATTTTGACTTTAAAAGGAACAGCTGATATACAAAAAGATTAGA
Found at i:8396739 original size:48 final size:48
Alignment explanation
Indices: 8396668--8396769 Score: 179
Period size: 48 Copynumber: 2.1 Consensus size: 48
8396658 ATAAGGCAAC
8396668 ATTTTATTTTGGCTTTAAAAGGGGCAG-TTGATATACAAAAAGATTAGA
1 ATTTTATTTTGGCTTTAAAAGGGGCAGCTT-ATATACAAAAAGATTAGA
*
8396716 ATTTTATTTTGGCTTTAAAAGGGGCAGCTTATATACAAAAGGATTAGA
1 ATTTTATTTTGGCTTTAAAAGGGGCAGCTTATATACAAAAAGATTAGA
8396764 ATTTTA
1 ATTTTA
8396770 AAAAAGAAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
48 50 0.96
49 2 0.04
ACGTcount: A:0.36, C:0.07, G:0.20, T:0.37
Consensus pattern (48 bp):
ATTTTATTTTGGCTTTAAAAGGGGCAGCTTATATACAAAAAGATTAGA
Found at i:8398240 original size:265 final size:266
Alignment explanation
Indices: 8397764--8398285 Score: 687
Period size: 265 Copynumber: 2.0 Consensus size: 266
8397754 TTTCTTCGTA
* *
8397764 AAAAAGTCAATTACTAACAAATAATAATTAAATCATTCGTACTATACAAATGACTCGTGGCCACA
1 AAAAAGTCAATTACTAACAAATAATAATTAAATCATTCGTACTAGAAAAATGACTCGTGGCCACA
* * *
8397829 TTACTTTTTCATCTATCATGTAATGCCTATGAGAAGATACAATTTACCATTTATTGAGCTATGAA
66 ATAC--TTTCATCTATCATGTAATACCTATGAGAAGATACAATCTACCATTTATTGAGCTATGAA
* * *
8397894 ATTCACCTTAGTAAATGAAGCTATGCCTTGCAAAAGTTGTATATCCAACATACCAAGTTTTGACT
129 ACTCACCTTAGTAAATGAAGCTATGCCTTGCAAAAGTCGTATATCCAACATACCAAGTTTCGACT
* * * *
8397959 CTATTATCAATTAAACTCGAGCTTTCAACACACCAAAGTAAACGAGTCACACACACATAGTCGCT
194 CTATTACCAATTAAACTCAAACTTTCAACACACCAAAGCAAACGAGTCACACACACATAGTCGCT
8398024 TACTCATG
259 TACTCATG
* * * *
8398032 AAAAAGTCAATTACTAACAAATAGTAATTAAATCATTTGT-CTTAGAAAAATTACTTGTGGCCAC
1 AAAAAGTCAATTACTAACAAATAATAATTAAATCATTCGTAC-TAGAAAAATGACTCGTGGCCAC
* * * *
8398096 AATAC-TTCATCTATCATGTAATACTTATGAGAGGATATC-ATCTACCATTTATTGTGTTATGAA
65 AATACTTTCATCTATCATGTAATACCTATGAGAAGATA-CAATCTACCATTTATTGAGCTATGAA
* * * *
8398159 AGCT-ACTTTAGTAAATGAAGTTATG-CTATGTAAAAGTCGTATATCCAATATACC-AGCTTTCG
129 A-CTCACCTTAGTAAATGAAGCTATGCCT-TGCAAAAGTCGTATATCCAACATACCAAG-TTTCG
* * * *
8398221 ACTCTATTACCAATTAAACTCAAACTTTCAATACATCAAAGCATACGAGTCCCACACACATAGTC
191 ACTCTATTACCAATTAAACTCAAACTTTCAACACACCAAAGCAAACGAGTCACACACACATAGTC
8398286 AATCACCTAC
Statistics
Matches: 221, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
264 4 0.02
265 154 0.70
266 2 0.01
267 1 0.00
268 60 0.27
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (266 bp):
AAAAAGTCAATTACTAACAAATAATAATTAAATCATTCGTACTAGAAAAATGACTCGTGGCCACA
ATACTTTCATCTATCATGTAATACCTATGAGAAGATACAATCTACCATTTATTGAGCTATGAAAC
TCACCTTAGTAAATGAAGCTATGCCTTGCAAAAGTCGTATATCCAACATACCAAGTTTCGACTCT
ATTACCAATTAAACTCAAACTTTCAACACACCAAAGCAAACGAGTCACACACACATAGTCGCTTA
CTCATG
Found at i:8400849 original size:98 final size:98
Alignment explanation
Indices: 8400655--8401067 Score: 476
Period size: 98 Copynumber: 4.2 Consensus size: 98
8400645 ATTCGCAAAA
* * * * *** * *
8400655 TGCGGCTTAAATTTTTCCCTTCAT-TTTTTGAGGTACAAGGTTTACCGTTGCGGCTT--ACCTTT
1 TGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTTCGTCATTGCGACTTAAACCTTT
* * * *
8400717 CCCTT-TTGTCTTCGTGGTACTGGATTCACCGT
66 CCCTTCATATCTTCGTGGTACTGGATTCGCCAT
* * *
8400749 TGCGGCTTGAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTCCGTCATTGCGACTTAAACCTTC
1 TGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTTCGTCATTGCGACTTAAACCTTT
* * * * *
8400814 CCCTCCATATCTTCGTGGTACTAGAGTCGTCGT
66 CCCTTCATATCTTCGTGGTACTGGATTCGCCAT
*
8400847 TGCGGCTTAAATCTTTCCCTTCATGC-TCTTGAGGTATAGGGTTCGTCATTGCGACTTAAACCTT
1 TGCGGCTTAAATCTTTCCCTTCATGCTTC-TGAGGTATAAGGTTCGTCATTGCGACTTAAACCTT
*** * *
8400911 TCCCTTTGCATCTTCGTGGTACTGGATTTGTCAT
65 TCCCTTCATATCTTCGTGGTACTGGATTCGCCAT
* * * * *
8400945 TGCGGCTTAAATATTTCCCTTTATGCTTCTGAGGTACAAGGTTTGTCATTGCGACTTAAACTTTT
1 TGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTTCGTCATTGCGACTTAAACCTTT
8401010 CCCTTCATTATCTTCGTGGTACTGGATTCGCCAT
66 CCCTTCA-TATCTTCGTGGTACTGGATTCGCCAT
*
8401044 CGCGGCTTAAATCTTTCCCTTCAT
1 TGCGGCTTAAATCTTTCCCTTCAT
8401068 TATTTTCGTG
Statistics
Matches: 267, Mismatches: 45, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
94 22 0.08
95 23 0.09
97 11 0.04
98 165 0.62
99 46 0.17
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (98 bp):
TGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGGTATAAGGTTCGTCATTGCGACTTAAACCTTT
CCCTTCATATCTTCGTGGTACTGGATTCGCCAT
Found at i:8401053 original size:50 final size:50
Alignment explanation
Indices: 8400713--8401214 Score: 330
Period size: 49 Copynumber: 10.2 Consensus size: 50
8400703 TGCGGCTTAC
* ** * *
8400713 CTTTCCCTT--TTGTCTTCGTGGTACTGGATTCACCGTTGCGGCTTGAAT
1 CTTTCCCTTCATTATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
* * * * *
8400761 CTTTCCCTTCA-T-GCTTCTGAGGTA-TAAGG-TCCGTCATTGCGACTTAAAC
1 CTTTCCCTTCATTATCTTC-GTGGTACT--GGATTCGTCATTGCGGCTTAAAT
* * * * *
8400810 CTTCCCCTCCA-TATCTTCGTGGTACTAGAGTCGTCGTTGCGGCTTAAAT
1 CTTTCCCTTCATTATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
** * * * *
8400859 CTTTCCCTTCATGCTCTT-GAGGTA-TAGGGTTCGTCATTGCGACTTAAAC
1 CTTTCCCTTCATTATCTTCGTGGTACT-GGATTCGTCATTGCGGCTTAAAT
* *
8400908 CTTTCCCTT--TGCATCTTCGTGGTACTGGATTTGTCATTGCGGCTTAAAT
1 CTTTCCCTTCAT-TATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
* * * * *
8400957 ATTTCCC-T--TTATGCTTCTGAGGTACAAGG-TTTGTCATTGCGACTTAAA-
1 CTTTCCCTTCATTAT-CTTC-GTGGTAC-TGGATTCGTCATTGCGGCTTAAAT
* *
8401005 CTTTTCCCTTCATTATCTTCGTGGTACTGGATTCGCCATCGCGGCTTAAAT
1 C-TTTCCCTTCATTATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
* *
8401056 CTTTCCCTTCATTATTTTCGTGGTACTGGATTCGCCATTGCGGCTTAAAT
1 CTTTCCCTTCATTATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
* * * * *
8401106 CTTTCCCTTCA-T-GCTTC-TGAGTA-TAAGG-TTCGCCGTTGCGACTTAAAC
1 CTTTCCCTTCATTATCTTCGTG-GTACT--GGATTCGTCATTGCGGCTTAAAT
* * * * * **
8401154 CTTTCCCTT--TGTATCTTTGCGGTACTAGATTAGCCATTATGGCTTAAAT
1 CTTTCCCTTCAT-TATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
8401203 CTTTCCCTTCAT
1 CTTTCCCTTCAT
8401215 GTCTTCATGA
Statistics
Matches: 355, Mismatches: 66, Indels: 63
0.73 0.14 0.13
Matches are distributed among these distances:
47 6 0.02
48 60 0.17
49 183 0.52
50 96 0.27
51 6 0.02
52 4 0.01
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.39
Consensus pattern (50 bp):
CTTTCCCTTCATTATCTTCGTGGTACTGGATTCGTCATTGCGGCTTAAAT
Found at i:8401102 original size:149 final size:147
Alignment explanation
Indices: 8400923--8401214 Score: 406
Period size: 149 Copynumber: 2.0 Consensus size: 147
8400913 CCTTTGCATC
* * *
8400923 TTCGTGGTACTGGATTTGTCATTGCGGCTTAAATATTTCCCTTTATGCTTCTGAGGTACAAGGTT
1 TTCGTGGTACTGGATTCGCCATTGCGGCTTAAATATTTCCCTTCATGCTTCTGA-GTACAAGGTT
* * * * * * *
8400988 TGTCATTGCGACTTAAACTTTTCCCTTCAT-TATCTTCGTGGTACTGGATTCGCCATCGCGGCTT
65 CGCCATTGCGACTTAAACCTTTCCCTT--TGTATCTTCGCGGTACTAGATTAGCCATCACGGCTT
8401052 AAATCTTTCCCTTCATTATT
128 AAATCTTTCCCTTCATTATT
* *
8401072 TTCGTGGTACTGGATTCGCCATTGCGGCTTAAATCTTTCCCTTCATGCTTCTGAGTATAAGGTTC
1 TTCGTGGTACTGGATTCGCCATTGCGGCTTAAATATTTCCCTTCATGCTTCTGAGTACAAGGTTC
* * * *
8401137 GCCGTTGCGACTTAAACCTTTCCCTTTGTATCTTTGCGGTACTAGATTAGCCATTATGGCTTAAA
66 GCCATTGCGACTTAAACCTTTCCCTTTGTATCTTCGCGGTACTAGATTAGCCATCACGGCTTAAA
8401202 TCTTTCCCTTCAT
131 TCTTTCCCTTCAT
8401215 GTCTTCATGA
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
146 1 0.01
147 43 0.34
148 32 0.25
149 50 0.40
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.40
Consensus pattern (147 bp):
TTCGTGGTACTGGATTCGCCATTGCGGCTTAAATATTTCCCTTCATGCTTCTGAGTACAAGGTTC
GCCATTGCGACTTAAACCTTTCCCTTTGTATCTTCGCGGTACTAGATTAGCCATCACGGCTTAAA
TCTTTCCCTTCATTATT
Found at i:8418776 original size:15 final size:14
Alignment explanation
Indices: 8418756--8418786 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 14
8418746 GTGAAATATA
8418756 TATTATATATATAAT
1 TATTATAT-TATAAT
8418771 TATTATATTATAAT
1 TATTATATTATAAT
8418785 TA
1 TA
8418787 CAATTATGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TATTATATTATAAT
Found at i:8418791 original size:20 final size:20
Alignment explanation
Indices: 8418754--8418793 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
8418744 AAGTGAAATA
*
8418754 TATATTATATATATAATTAT
1 TATATTATATATACAATTAT
8418774 TATATTATA-ATTACAATTAT
1 TATATTATATA-TACAATTAT
8418794 GGATTCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTATATATACAATTAT
Found at i:8430216 original size:25 final size:24
Alignment explanation
Indices: 8430147--8430217 Score: 63
Period size: 25 Copynumber: 2.8 Consensus size: 24
8430137 TATATACCGT
*
8430147 TTTTAAATTAATTTATATTTTGATA
1 TTTT-AATTAATTTATATTTTGAAA
** *
8430172 TTTTTCTATAACTTT-GATTTTGAAAA
1 TTTTAAT-TAA-TTTATATTTTG-AAA
8430198 TTTTAATTAATTTATATTTT
1 TTTTAATTAATTTATATTTT
8430218 AATTTTTCAT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
24 4 0.11
25 21 0.60
26 10 0.29
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTAATTAATTTATATTTTGAAA
Found at i:8430401 original size:26 final size:25
Alignment explanation
Indices: 8430372--8430427 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
8430362 TTATGTATTA
* *
8430372 AATTAATTTTAATAATAATAATAATT
1 AATTAATATTAACAA-AATAATAATT
* *
8430398 AATTTAGTATTAGCAAAATAATAATT
1 AA-TTAATATTAACAAAATAATAATT
8430424 AATT
1 AATT
8430428 TAACTTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 2 0.08
26 14 0.56
27 9 0.36
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (25 bp):
AATTAATATTAACAAAATAATAATT
Found at i:8440597 original size:4 final size:4
Alignment explanation
Indices: 8440588--8440614 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8440578 AAAATATTAT
8440588 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
8440615 CTAATAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:8443396 original size:39 final size:36
Alignment explanation
Indices: 8443308--8443391 Score: 159
Period size: 36 Copynumber: 2.3 Consensus size: 36
8443298 GAAGGTAAAT
8443308 TATTCTTTTATTTAGTTAAACGTAATATTCATGATGA
1 TATT-TTTTATTTAGTTAAACGTAATATTCATGATGA
8443345 TATTTTTTATTTAGTTAAACGTAATATTCATGATGA
1 TATTTTTTATTTAGTTAAACGTAATATTCATGATGA
8443381 TATTTTTTATT
1 TATTTTTTATT
8443392 ATTTATTTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 43 0.91
37 4 0.09
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (36 bp):
TATTTTTTATTTAGTTAAACGTAATATTCATGATGA
Found at i:8443776 original size:18 final size:18
Alignment explanation
Indices: 8443753--8443789 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8443743 CAGTTTTGTT
8443753 CTATTCCATTTAACCAAA
1 CTATTCCATTTAACCAAA
8443771 CTATTCCATTTAACCAAA
1 CTATTCCATTTAACCAAA
8443789 C
1 C
8443790 AATTGAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (18 bp):
CTATTCCATTTAACCAAA
Found at i:8445292 original size:34 final size:34
Alignment explanation
Indices: 8445249--8445316 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
8445239 ATAAAAAATT
* * *
8445249 AATTCAAAAATAA-TAATATTTCAACATAATAATC
1 AATTCAAAAA-AAGCAATATTCCAACATAACAATC
8445283 AATTCAAAAAAAGCAATATTCCAACATAACAATC
1 AATTCAAAAAAAGCAATATTCCAACATAACAATC
8445317 GATTTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 2 0.07
34 28 0.93
ACGTcount: A:0.56, C:0.16, G:0.01, T:0.26
Consensus pattern (34 bp):
AATTCAAAAAAAGCAATATTCCAACATAACAATC
Found at i:8468210 original size:25 final size:25
Alignment explanation
Indices: 8468182--8468240 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
8468172 TCTAATGTAG
8468182 ATATTAAAATAATGTTAAGATGACT
1 ATATTAAAATAATGTTAAGATGACT
*
8468207 ATATTAAAATAATGTTAAGATGATT
1 ATATTAAAATAATGTTAAGATGACT
*
8468232 ATATAAAAA
1 ATATTAAAA
8468241 ATTTCAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.36
Consensus pattern (25 bp):
ATATTAAAATAATGTTAAGATGACT
Found at i:8470758 original size:16 final size:16
Alignment explanation
Indices: 8470727--8470763 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
8470717 ATAGGAAGAG
8470727 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
8470743 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
8470759 TATTA
1 TATTA
8470764 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:8471892 original size:30 final size:30
Alignment explanation
Indices: 8471856--8471931 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
8471846 TTTAATTTTT
*
8471856 AATAATAAAATTATATTTTAAT-TTCTTAAA
1 AATAATAAAATTATAATTTAATATT-TTAAA
8471886 AATAATAAAAATT-TAATTTAATATTTTAAA
1 AATAAT-AAAATTATAATTTAATATTTTAAA
* * *
8471916 TATTATAAAAATATAA
1 AATAATAAAATTATAA
8471932 ATTATTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 5 0.13
30 26 0.67
31 8 0.21
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (30 bp):
AATAATAAAATTATAATTTAATATTTTAAA
Found at i:8471899 original size:26 final size:25
Alignment explanation
Indices: 8471840--8471904 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 25
8471830 AATTTACATT
*
8471840 TAAATTTTTAATTTTTAATAATAAAA
1 TAAA-TTTTAATTTTTAAAAATAAAA
*
8471866 TTATATTTTAATTTCTTAAAAATAATAA
1 -TAAATTTTAATTT-TTAAAAATAA-AA
8471894 -AAA-TTTAATTT
1 TAAATTTTAATTT
8471905 AATATTTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 8 0.24
26 11 0.33
27 12 0.36
28 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (25 bp):
TAAATTTTAATTTTTAAAAATAAAA
Found at i:8477912 original size:25 final size:25
Alignment explanation
Indices: 8477881--8477936 Score: 69
Period size: 24 Copynumber: 2.2 Consensus size: 25
8477871 ATTCAATTGG
*
8477881 ATTTTTTCTCTTAGTTAAATTAT-ATT
1 ATTTTTTC-C-TAATTAAATTATGATT
*
8477907 ATTTTTTCCTAATTAAATTCTGATT
1 ATTTTTTCCTAATTAAATTATGATT
8477932 ATTTT
1 ATTTT
8477937 AGAAATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 10 0.37
25 9 0.33
26 8 0.30
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.61
Consensus pattern (25 bp):
ATTTTTTCCTAATTAAATTATGATT
Found at i:8485934 original size:16 final size:16
Alignment explanation
Indices: 8485897--8485926 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8485887 TGCCAGTGTG
8485897 TTCAA-TTTTTATAAC
1 TTCAATTTTTTATAAC
8485912 TTCAATTTTTTATAA
1 TTCAATTTTTTATAA
8485927 TTGTAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (16 bp):
TTCAATTTTTTATAAC
Found at i:8494876 original size:13 final size:13
Alignment explanation
Indices: 8494858--8494887 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
8494848 AATATGTGTT
8494858 TGTTAATTTAAGG
1 TGTTAATTTAAGG
8494871 TGTTAATTTAAGG
1 TGTTAATTTAAGG
8494884 TGTT
1 TGTT
8494888 TGGTATTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (13 bp):
TGTTAATTTAAGG
Found at i:8495113 original size:17 final size:18
Alignment explanation
Indices: 8495093--8495133 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8495083 AATAATACAG
8495093 AAAATATAAAAT-AATTT
1 AAAATATAAAATAAATTT
* *
8495110 AAAATTTTAAATAAATTT
1 AAAATATAAAATAAATTT
8495128 AAAATA
1 AAAATA
8495134 ATTAACGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATATAAAATAAATTT
Found at i:8501994 original size:20 final size:21
Alignment explanation
Indices: 8501955--8501996 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
8501945 ACTTTTTCTA
*
8501955 AAGTTAAAAGTCAAACCCATT
1 AAGTTAAAAGTCAAAACCATT
8501976 AAGTTAAAAG-CAAAACCATT
1 AAGTTAAAAGTCAAAACCATT
8501996 A
1 A
8501997 TATTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (21 bp):
AAGTTAAAAGTCAAAACCATT
Found at i:8503202 original size:16 final size:17
Alignment explanation
Indices: 8503170--8503202 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8503160 AATAAAAAAT
*
8503170 ATAATTTCATCTTTTTA
1 ATAATTTCATATTTTTA
8503187 ATAATTT-ATATTTTTA
1 ATAATTTCATATTTTTA
8503203 TTATTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
ATAATTTCATATTTTTA
Found at i:8504024 original size:131 final size:129
Alignment explanation
Indices: 8503768--8504002 Score: 389
Period size: 131 Copynumber: 1.8 Consensus size: 129
8503758 TCTTTGATTG
8503768 TTATCCATAATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATT
1 TTATCCATAATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATT
** * * * *
8503833 AAATAAAATGCGAGGAATAATATGATTAAATAGAATTCAAATTAATTCGATTAATAATAATATA
66 AAATAAAATGCGAAAAATAATATGATTAAATAAAACTCAAATTAATTCAACTAATAATAATATA
*
8503897 TTATCCATGATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAAAACATATGTA
1 TTATCCATAATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTAT--AAAAAAACATATGTA
8503962 TTAAATAAAATGCGAAAAATAATATGATTAAATAAAACTCA
64 TTAAATAAAATGCGAAAAATAATATGATTAAATAAAACTCA
8504003 GTTAATTTAA
Statistics
Matches: 99, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
129 47 0.47
131 52 0.53
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (129 bp):
TTATCCATAATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATT
AAATAAAATGCGAAAAATAATATGATTAAATAAAACTCAAATTAATTCAACTAATAATAATATA
Found at i:8504042 original size:131 final size:129
Alignment explanation
Indices: 8503776--8504043 Score: 335
Period size: 131 Copynumber: 2.1 Consensus size: 129
8503766 TGTTATCCAT
8503776 AATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATTAAATAAAA
1 AATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATTAAATAAAA
** * * * * ** ** *
8503841 TGCGAGGAATAATATGATTAAATAGAATTCAAATTAATTCGATTAATAATAATATATTATCCAT
66 TGCGAAAAATAATATGATTAAATAAAACTCAAATTAATTCAACTAATAATAATATAGAATAAAA
*
8503905 GATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAAAACATATGTATTAAATAA
1 AATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTAT--AAAAAAACATATGTATTAAATAA
* * *
8503970 AATGCGAAAAATAATATGATTAAATAAAACTC-AGTTAATTTAAGCTAGA-AATAAT-TCGAATA
64 AATGCGAAAAATAATATGATTAAATAAAACTCAAATTAATTCAA-CTA-ATAATAATATAGAATA
8504032 AAA
127 AAA
8504035 AATTATTTT
1 AA-TATTTT
8504044 AATCTTGAAA
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
129 39 0.33
130 13 0.11
131 65 0.55
132 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (129 bp):
AATATTTTGCAACCTTTGCTTTGTATGAATTTTTTTTTATAAAAAAACATATGTATTAAATAAAA
TGCGAAAAATAATATGATTAAATAAAACTCAAATTAATTCAACTAATAATAATATAGAATAAAA
Found at i:8512027 original size:23 final size:24
Alignment explanation
Indices: 8512000--8512072 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 24
8511990 TCGATTGAGT
8512000 ATGTTCATTTAAC-TT-AATCGAAC
1 ATGTTCATTTAACATTAAAT-GAAC
*
8512023 ATGTTCA-TTGACATTAAATGAAC
1 ATGTTCATTTAACATTAAATGAAC
* *
8512046 ATGTTCA-TGAACATATAATTGAAC
1 ATGTTCATTTAACAT-TAAATGAAC
8512070 ATG
1 ATG
8512073 CCTACGAACA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
22 4 0.09
23 25 0.58
24 14 0.33
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (24 bp):
ATGTTCATTTAACATTAAATGAAC
Found at i:8512762 original size:3 final size:3
Alignment explanation
Indices: 8512754--8512801 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8512744 TCAGTTCAAT
8512754 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8512802 GCAGCAGTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8531085 original size:16 final size:16
Alignment explanation
Indices: 8531059--8531097 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
8531049 TAAAGTTACA
*
8531059 ATATATAATAATTTATT
1 ATAT-TAATAATTAATT
8531076 ATATTAATAATTAATT
1 ATATTAATAATTAATT
8531092 ATATTA
1 ATATTA
8531098 TTAAATATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTAATAATTAATT
Found at i:8531124 original size:26 final size:24
Alignment explanation
Indices: 8531058--8531124 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 24
8531048 ATAAAGTTAC
*
8531058 AATATATAATAATTTATTATATTAAT
1 AATATA-AAT-ATTTATTATATAAAT
*
8531084 AAT-TAATTATATTATTAAATATAAAT
1 AATATAAATAT-TTATT--ATATAAAT
8531110 AATATAAATATTTAT
1 AATATAAATATTTAT
8531125 GTTTAATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
23 2 0.06
24 7 0.21
25 2 0.06
26 17 0.50
27 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATATAAATATTTATTATATAAAT
Found at i:8531150 original size:15 final size:15
Alignment explanation
Indices: 8531130--8531167 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8531120 TTTATGTTTA
*
8531130 ATAATATTGAATACT
1 ATAATATTCAATACT
*
8531145 ATAATATTCAATATT
1 ATAATATTCAATACT
8531160 ATAATATT
1 ATAATATT
8531168 TGACATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (15 bp):
ATAATATTCAATACT
Found at i:8531915 original size:16 final size:16
Alignment explanation
Indices: 8531891--8531924 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8531881 TAACTAAGAA
8531891 ATTTATTATAGGAAAT
1 ATTTATTATAGGAAAT
* *
8531907 ATTTTTTATAGGGAAT
1 ATTTATTATAGGAAAT
8531923 AT
1 AT
8531925 CTTAGTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (16 bp):
ATTTATTATAGGAAAT
Found at i:8536358 original size:3 final size:3
Alignment explanation
Indices: 8536352--8536380 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8536342 ATTGTTGTTG
8536352 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8536381 TTCGTCCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8538460 original size:52 final size:52
Alignment explanation
Indices: 8538377--8538477 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
8538367 TTAAAATCTG
* * *
8538377 AATAGCATAATAATTAACTATTTAAAATTAAATAATTTAATAATATTTTATT
1 AATAGCATAATAATTAACGAATTAAAATTAAATAATTAAATAATATTTTATT
* *
8538429 AATATCATAATAATTAAGGAATTAAAATTAAATAATTAAATAATATTTT
1 AATAGCATAATAATTAACGAATTAAAATTAAATAATTAAATAATATTTT
8538478 CTTACCATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (52 bp):
AATAGCATAATAATTAACGAATTAAAATTAAATAATTAAATAATATTTTATT
Found at i:8538618 original size:28 final size:27
Alignment explanation
Indices: 8538579--8538655 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 27
8538569 CGATTTAGAT
* *
8538579 AATTTA-AAAAAAACATTG-GAATTGAG
1 AATTTAGAAAAAAA-ATCGAGAATTGAC
8538605 AATTTAGAATAAAAAATCGAGAATTGAC
1 AATTTAGAA-AAAAAATCGAGAATTGAC
* *
8538633 AATTGAGAACAACAAATCGAGAA
1 AATTTAGAA-AAAAAATCGAGAA
8538656 CAAAATTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 6 0.14
27 5 0.12
28 32 0.74
ACGTcount: A:0.55, C:0.08, G:0.16, T:0.22
Consensus pattern (27 bp):
AATTTAGAAAAAAAATCGAGAATTGAC
Found at i:8550702 original size:18 final size:18
Alignment explanation
Indices: 8550679--8550718 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8550669 TCTTTATTTC
8550679 CCATTT-TCTTCTCCTTCT
1 CCATTTGTCTTC-CCTTCT
*
8550697 CCATTTGTTTTCCCTTCT
1 CCATTTGTCTTCCCTTCT
8550715 CCAT
1 CCAT
8550719 CTCAAAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.07, C:0.38, G:0.03, T:0.53
Consensus pattern (18 bp):
CCATTTGTCTTCCCTTCT
Found at i:8554666 original size:84 final size:86
Alignment explanation
Indices: 8554517--8554706 Score: 246
Period size: 84 Copynumber: 2.2 Consensus size: 86
8554507 TTTATACCTT
* * * *
8554517 TATTT-TGCCTTGTGTATGATTCCTAGTGGGGCTGGCCACATTTTGTTTTAATATATGTATGTCT
1 TATTTATGCCTTGTGTATGATTCCTAGTAGGACTGACCACATTGTGTTTTAATATATGTATGTCT
*
8554581 TT-ATTCTGTCAT-TTTTCAATA
66 TTAATT-TGCCATATTTT-AATA
* * *
8554602 TATTTATGCCTTGTGTATGATTGCTGGTAGGACTGATCACA-TGT-TTTTAATATATGTATGTCT
1 TATTTATGCCTTGTGTATGATTCCTAGTAGGACTGACCACATTGTGTTTTAATATATGTATGTCT
8554665 TTAATTTGCCATATTTTAATA
66 TTAATTTGCCATATTTTAATA
*
8554686 TATTTATGCCCTGTGTATGAT
1 TATTTATGCCTTGTGTATGAT
8554707 ATGATATGTT
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
84 50 0.54
85 14 0.15
86 29 0.31
ACGTcount: A:0.22, C:0.13, G:0.17, T:0.48
Consensus pattern (86 bp):
TATTTATGCCTTGTGTATGATTCCTAGTAGGACTGACCACATTGTGTTTTAATATATGTATGTCT
TTAATTTGCCATATTTTAATA
Done.