Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 32 of 163
Found at i:8555207 original size:164 final size:163
Alignment explanation
Indices: 8554936--8555260 Score: 571
Period size: 164 Copynumber: 2.0 Consensus size: 163
8554926 TACACCAAGC
8554936 AAACTCATCTTGCCATTTACTCCAACTTCATAAGGTCAATAAGGGGTCCTAAGCAATGGGAGTCT
1 AAACTCATCTTGCCATTTACTCCAACTTCATAAGGTCAATAAGGGGTCCTAAGCAATGGGAGTCT
* *
8555001 ATGCCAAACATGCTGCCAAAACTGCCTACTACATTAAGAAGGCCAGCGGGTAGGCCAAGAG-AGG
66 ATGCCAAACATGCTGCCAAAACTGCCTACTACACTAAGAAGGCCAGCGAGTAGGCCAAGAGAAGG
8555065 TTTTGAAATGAAGTGTAGTAAATGCAAGAAATGGT
131 --TTGAAATGAAGTGTAGTAAATGCAAGAAATGGT
*
8555100 AAACTCATCTTGCCATTTACTCCTACTTCATAAGGTCAATAAGGGGTCCTAAGCAATGGGAGTCT
1 AAACTCATCTTGCCATTTACTCCAACTTCATAAGGTCAATAAGGGGTCCTAAGCAATGGGAGTCT
* *
8555165 ATGCTAAACATGCTGCCAAAACTGCCTACTACACTAAGAAGGCCAGCTAGTAGGCCAAGAGAAAG
66 ATGCCAAACATGCTGCCAAAACTGCCTACTACACTAAGAAGGCCAGCGAGTAGGCCAAGAG-AAG
8555230 GTTGAAATGAAGTGTAGTAAATGCAAGAAAT
130 GTTGAAATGAAGTGTAGTAAATGCAAGAAAT
8555261 AGGCCACCAT
Statistics
Matches: 154, Mismatches: 5, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
164 151 0.98
166 3 0.02
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (163 bp):
AAACTCATCTTGCCATTTACTCCAACTTCATAAGGTCAATAAGGGGTCCTAAGCAATGGGAGTCT
ATGCCAAACATGCTGCCAAAACTGCCTACTACACTAAGAAGGCCAGCGAGTAGGCCAAGAGAAGG
TTGAAATGAAGTGTAGTAAATGCAAGAAATGGT
Found at i:8555451 original size:21 final size:21
Alignment explanation
Indices: 8555427--8555476 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
8555417 AGTGGTTGCT
* *
8555427 CCAATTCAGCAACAGGCTACC
1 CCAACTCAGCAACAGACTACC
*
8555448 CCAACTCAGCAAGAGACTACC
1 CCAACTCAGCAACAGACTACC
8555469 CCAACTCA
1 CCAACTCA
8555477 ACAGGAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.36, C:0.40, G:0.12, T:0.12
Consensus pattern (21 bp):
CCAACTCAGCAACAGACTACC
Found at i:8555491 original size:21 final size:21
Alignment explanation
Indices: 8555467--8555525 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
8555457 CAAGAGACTA
** *
8555467 CCCCAACTCAACAGGAAGTTG
1 CCCCAACTCAACAACAAATTG
*
8555488 CCCCAACTCATCAACAAATTG
1 CCCCAACTCAACAACAAATTG
* *
8555509 CCCCAACACACCAACAA
1 CCCCAACTCAACAACAA
8555526 GATGCTGCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.39, C:0.41, G:0.08, T:0.12
Consensus pattern (21 bp):
CCCCAACTCAACAACAAATTG
Found at i:8556168 original size:14 final size:14
Alignment explanation
Indices: 8556149--8556217 Score: 52
Period size: 14 Copynumber: 4.6 Consensus size: 14
8556139 TTACACTATA
8556149 AAATATTTATTATT
1 AAATATTTATTATT
8556163 AAATATTTATAAATCATAAT
1 AAATATTTAT---T-AT--T
*
8556183 ACATATTTATTATT
1 AAATATTTATTATT
8556197 AAA-ATATTATTA-T
1 AAATAT-TTATTATT
8556210 AAATATTT
1 AAATATTT
8556218 TCAATGATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
13 8 0.18
14 21 0.47
16 2 0.04
17 2 0.04
18 2 0.04
20 10 0.22
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (14 bp):
AAATATTTATTATT
Found at i:8556311 original size:18 final size:18
Alignment explanation
Indices: 8556290--8556328 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8556280 AGTAAAGTTA
8556290 TAAAATAAAATAATT-TAT
1 TAAAAT-AAATAATTATAT
*
8556308 TAAAATAATTAATTATAT
1 TAAAATAAATAATTATAT
8556326 TAA
1 TAA
8556329 GTATTTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAATAAATAATTATAT
Found at i:8556360 original size:26 final size:27
Alignment explanation
Indices: 8556292--8556361 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 27
8556282 TAAAGTTATA
8556292 AAATA-AAATAATTTATTAAAATAATT
1 AAATATAAATAATTTATTAAAATAATT
* *
8556318 AATTATATTAAGT-ATTTATTATAAT-ATT
1 AA--ATA-TAAATAATTTATTAAAATAATT
8556346 AAATATAAATAATTTA
1 AAATATAAATAATTTA
8556362 AATATGTATG
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
25 4 0.11
26 10 0.28
28 8 0.22
29 11 0.31
30 3 0.08
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATATAAATAATTTATTAAAATAATT
Found at i:8556396 original size:15 final size:15
Alignment explanation
Indices: 8556376--8556413 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8556366 TGTATGTTTA
*
8556376 ATAATATTGAATACT
1 ATAATATTCAATACT
*
8556391 ATAATATTCAATATT
1 ATAATATTCAATACT
8556406 ATAATATT
1 ATAATATT
8556414 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (15 bp):
ATAATATTCAATACT
Found at i:8556424 original size:16 final size:15
Alignment explanation
Indices: 8556376--8556427 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
8556366 TGTATGTTTA
* * *
8556376 ATAATATTGAATACT
1 ATAATATTCAAAATT
*
8556391 ATAATATTCAATATT
1 ATAATATTCAAAATT
*
8556406 ATAATATTTTAAAATT
1 ATAATA-TTCAAAATT
8556422 ATAATA
1 ATAATA
8556428 ATAAATTATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 19 0.59
16 13 0.41
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
ATAATATTCAAAATT
Found at i:8570451 original size:18 final size:18
Alignment explanation
Indices: 8570428--8570467 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8570418 TCTTTATTTC
8570428 CCATTT-TCTTCTCCTTCT
1 CCATTTGTCTTC-CCTTCT
*
8570446 CCATTTGTTTTCCCTTCT
1 CCATTTGTCTTCCCTTCT
8570464 CCAT
1 CCAT
8570468 CTCAAAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.07, C:0.38, G:0.03, T:0.53
Consensus pattern (18 bp):
CCATTTGTCTTCCCTTCT
Found at i:8575716 original size:13 final size:13
Alignment explanation
Indices: 8575700--8575756 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
8575690 TCTTTTTCTT
8575700 TTTTATTATTTAA
1 TTTTATTATTTAA
8575713 TTTTATTA-TTATA
1 TTTTATTATTTA-A
* **
8575726 TTTTATAATAAAA
1 TTTTATTATTTAA
* *
8575739 TATTAGTATTTAA
1 TTTTATTATTTAA
8575752 TTTTA
1 TTTTA
8575757 AACTTTAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
12 3 0.09
13 29 0.88
14 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTTATTATTTAA
Found at i:8580867 original size:19 final size:21
Alignment explanation
Indices: 8580843--8580885 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 21
8580833 TAATATTTTA
*
8580843 AAATTTTTAAA-TTAAAAA-T
1 AAATTTTAAAATTTAAAAATT
8580862 AAA-TTTAAAATTTAAAAATT
1 AAATTTTAAAATTTAAAAATT
8580882 AAAT
1 AAAT
8580886 AATAAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
18 6 0.30
19 10 0.50
20 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATTTTAAAATTTAAAAATT
Found at i:8580868 original size:26 final size:27
Alignment explanation
Indices: 8580829--8580891 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
8580819 CCACCAAAAT
**
8580829 AAAATAATATTTTAAAATTTTTAAATTA
1 AAAATAA-ATTTTAAAATTTAAAAATTA
8580857 AAAATAAA-TTTAAAATTTAAAAATTA
1 AAAATAAATTTTAAAATTTAAAAATTA
8580883 AATAATAAA
1 AA-AATAAA
8580892 CAAAAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 18 0.56
27 7 0.22
28 7 0.22
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (27 bp):
AAAATAAATTTTAAAATTTAAAAATTA
Found at i:8580897 original size:26 final size:26
Alignment explanation
Indices: 8580842--8580897 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
8580832 ATAATATTTT
** **
8580842 AAAATTTTTAAATTAAAAATAAATTT
1 AAAATTTAAAAATTAAAAATAAATCA
8580868 AAAATTTAAAAATTAAATAATAAA-CA
1 AAAATTTAAAAATTAAA-AATAAATCA
8580894 AAAA
1 AAAA
8580898 AATTCATCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 19 0.76
27 6 0.24
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (26 bp):
AAAATTTAAAAATTAAAAATAAATCA
Found at i:8581018 original size:99 final size:96
Alignment explanation
Indices: 8580912--8581206 Score: 265
Period size: 92 Copynumber: 3.2 Consensus size: 96
8580902 CATCGAGAAT
*
8580912 TGGTGGCGTTATTTAATATGACTCCACTAAAAATAAAATATATATTTAAATATTATATAATAAAT
1 TGGTGGCGTCATTTAATATGACTCCAC-AAAAATAAAATATAT-TTTAAATATTATATAATAAAT
8580977 AAAAAATAATTTAAAAAATTTTATTTAATTAAAG
64 AAAAAATAATTTAAAAAA-TTTATTTAATTAAAG
* * * *
8581011 TGGTGGCGCCATCTAATATGACACCAC---AA-AAAA-A-ATTTTAAAT-TTATTTTAA-AAAT-
1 TGGTGGCGTCATTTAATATGACTCCACAAAAATAAAATATATTTTAAATATTA-TATAATAAATA
8581067 AAAAA-AATTT---AAATTTATTTAATTAAAG
65 AAAAATAATTTAAAAAATTTATTTAATTAAAG
* * *
8581095 GGGTGGC-TCCATTTAATATGGTACCACCAAAAAAATTAAAAT-TATTTT-AA-A--A-AT-ATA
1 TGGTGGCGT-CATTTAATAT-G-A-CTCCACAAAAA-TAAAATATATTTTAAATATTATATAATA
8581152 AATAAAAAATAA-TTAAAAAATTTATTTAATTAAAG
61 AATAAAAAATAATTTAAAAAATTTATTTAATTAAAG
* *
8581187 TGGTGGCGCCATCTAATATG
1 TGGTGGCGTCATTTAATATG
8581207 GCACCACCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 48
0.73 0.06 0.21
Matches are distributed among these distances:
84 30 0.18
85 4 0.02
86 1 0.01
87 6 0.04
88 10 0.06
89 12 0.07
90 12 0.07
91 12 0.07
92 41 0.25
93 6 0.04
94 4 0.02
95 2 0.01
99 23 0.14
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.35
Consensus pattern (96 bp):
TGGTGGCGTCATTTAATATGACTCCACAAAAATAAAATATATTTTAAATATTATATAATAAATAA
AAAATAATTTAAAAAATTTATTTAATTAAAG
Found at i:8581065 original size:84 final size:84
Alignment explanation
Indices: 8580971--8581259 Score: 262
Period size: 88 Copynumber: 3.3 Consensus size: 84
8580961 ATATTATATA
8580971 ATAAATAAAAAATAATTTAAAAAATTTTATTTAATTAAAGTGGTGGCGCCATCTAATATGACACC
1 ATAAATAAAAAATAA-TTAAAAAA-TTTATTTAATTAAAGTGGTGGCGCCATCTAATATGACACC
*
8581036 ACAAAAAAA-ATTTTAAATTTATT
64 ACAAAAAAATATTTTAAA---AAT
* * * * * *
8581059 TTAAA-AATAAAAAAATT--TAAATTTATTTAATTAAAGGGGTGGCTCCATTTAATATGGTACCA
1 ATAAATAA-AAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATAT-G-A-CA
*
8581121 CCAAAAAAATTAAAATTATTTTAAAAAT
62 CC--ACAAA--AAAA-TATTTTAAAAAT
*
8581149 ATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCACCAC
1 ATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGACACCA-
* *
8581214 CAAAAAATTAAATTTTCAAAAAA
65 CAAAAAA--ATATTTT-AAAAAT
** *
8581237 ATAAATATTAAATAATGAAAAAA
1 ATAAATAAAAAATAATTAAAAAA
8581260 ATAGGCTGAC
Statistics
Matches: 163, Mismatches: 21, Indels: 34
0.75 0.10 0.16
Matches are distributed among these distances:
84 31 0.19
85 4 0.02
86 4 0.02
87 14 0.09
88 39 0.24
89 8 0.05
90 14 0.09
91 7 0.04
92 34 0.21
93 8 0.05
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (84 bp):
ATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGACACCAC
AAAAAAATATTTTAAAAAT
Found at i:8581185 original size:92 final size:91
Alignment explanation
Indices: 8580970--8581259 Score: 343
Period size: 84 Copynumber: 3.3 Consensus size: 91
8580960 AATATTATAT
*
8580970 AATAAATAAAAAATAATTTAAAAAATTTTATTTAATTAAAGTGGTGGCGCCATCTAATATGACAC
1 AATAAATAAAAAATAA-TTAAAAAA-TTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCAC
* *
8581035 CACAAAAAAAATTTTAAATTTATTTT-AAA
64 CACCAAAAAAA--TTAAAATTATTTTAAAA
* * * *
8581064 AAT--A-AAAAAAT--TT---AAATTTATTTAATTAAAGGGGTGGCTCCATTTAATATGGTACCA
1 AATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCACCA
8581121 CCAAAAAAATTAAAATTATTTTAAAA
66 CCAAAAAAATTAAAATTATTTTAAAA
8581147 ATATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCACC
1 A-ATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCACC
**
8581212 ACC-AAAAAATT-AAATT-TTCAAAAA
65 ACCAAAAAAATTAAAATTATTTTAAAA
** *
8581236 AATAAATATTAAATAATGAAAAAA
1 AATAAATAAAAAATAATTAAAAAA
8581260 ATAGGCTGAC
Statistics
Matches: 170, Mismatches: 16, Indels: 26
0.80 0.08 0.12
Matches are distributed among these distances:
82 12 0.07
83 4 0.02
84 46 0.27
85 3 0.02
86 1 0.01
87 7 0.04
88 22 0.13
89 9 0.05
90 5 0.03
91 15 0.09
92 43 0.25
94 3 0.02
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (91 bp):
AATAAATAAAAAATAATTAAAAAATTTATTTAATTAAAGTGGTGGCGCCATCTAATATGGCACCA
CCAAAAAAATTAAAATTATTTTAAAA
Found at i:8581934 original size:21 final size:21
Alignment explanation
Indices: 8581904--8581944 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8581894 TAATGGTAAT
*
8581904 GTTGACGTGGTCAGTTAACTA
1 GTTGACGTGGCCAGTTAACTA
*
8581925 GTTGATGTGGCCAGTTAACT
1 GTTGACGTGGCCAGTTAACT
8581945 TGCCACGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (21 bp):
GTTGACGTGGCCAGTTAACTA
Found at i:8582815 original size:184 final size:182
Alignment explanation
Indices: 8582487--8582863 Score: 531
Period size: 184 Copynumber: 2.1 Consensus size: 182
8582477 ATGCTTTGTT
* * * *
8582487 ATGTGCATACATATAGCCTTAGGTTTAGTGATAAAACATTTTTATTGAATTATTTGAAACTGTGT
1 ATGTGCATACAGATAACCTTAGGTTTAGTGACAAAACATTTTTATTGAATTATTTAAAACTGTGT
* * *
8582552 ATGTCATTAAATTATTCAAATATGATTCAACATATTTTTTAAATGTTGATTGAAATATGATTATT
66 ATGTCATCAAATTATTCAAATATAATTCAACATA-TTTTTAAATGTTCATTGAAATATGATTATT
*
8582617 GTTTGTACCAAACTGAATTGCAGGTTTGGATTTTTGTAAACTTATGGTCTGCC
130 GTTTATACCAAACTGAATTGCAGGTTTGGATTTTTGTAAACTTATGGTCTGCC
* * *
8582670 ATGTGCATATAGATAACCTTAGAGTTTAGTGACAAATCATTTTTTATTGAATTATTTAAAATTGT
1 ATGTGCATACAGATAACCTTAG-GTTTAGTGACAAAACA-TTTTTATTGAATTATTTAAAACTGT
* ** *
8582735 GTATGTCATCAAATTATTCAAATATAATTTATGAGTA-TTTTAAATGTTCATTGAAATATGATTG
64 GTATGTCATCAAATTATTCAAATATAATTCAACA-TATTTTTAAATGTTCATTGAAATATGATTA
* * * *
8582799 TTGTTTATATCAAACTGAATTGCAGGTTTGGATTTTTGTAAATTTATTGTTTGCC
128 TTGTTTATACCAAACTGAATTGCAGGTTTGGATTTTTGTAAACTTATGGTCTGCC
*
8582854 ATTTGCATAC
1 ATGTGCATAC
8582864 TAATTGCCTT
Statistics
Matches: 170, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
183 19 0.11
184 97 0.57
185 52 0.31
186 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (182 bp):
ATGTGCATACAGATAACCTTAGGTTTAGTGACAAAACATTTTTATTGAATTATTTAAAACTGTGT
ATGTCATCAAATTATTCAAATATAATTCAACATATTTTTAAATGTTCATTGAAATATGATTATTG
TTTATACCAAACTGAATTGCAGGTTTGGATTTTTGTAAACTTATGGTCTGCC
Found at i:8587451 original size:21 final size:21
Alignment explanation
Indices: 8587400--8587457 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
8587390 ATTCAACAAC
*
8587400 AAGCTACCCAAACTCAGTAAG
1 AAGCTACCCCAACTCAGTAAG
*
8587421 -AGACTACCCCAACTCAGTAGG
1 AAG-CTACCCCAACTCAGTAAG
*
8587442 AAGCTGCCCCAACTCA
1 AAGCTACCCCAACTCA
8587458 CCAAGAAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.14
Consensus pattern (21 bp):
AAGCTACCCCAACTCAGTAAG
Found at i:8588110 original size:23 final size:23
Alignment explanation
Indices: 8588084--8588128 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8588074 AAAATAATAA
*
8588084 TATTTTATA-CTATAAATATTTAT
1 TATTATATATCTATAAAT-TTTAT
*
8588107 TATTATATATTTATAAATTTTA
1 TATTATATATCTATAAATTTTA
8588129 ATACATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATATATCTATAAATTTTAT
Found at i:8588192 original size:16 final size:16
Alignment explanation
Indices: 8588159--8588197 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8588149 TAAAGTTCTA
8588159 ATATATAATAATTAATT
1 ATAT-TAATAATTAATT
* *
8588176 ATATTAATTATTTATT
1 ATATTAATAATTAATT
8588192 ATATTA
1 ATATTA
8588198 TTAAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTAATAATTAATT
Found at i:8588250 original size:15 final size:15
Alignment explanation
Indices: 8588230--8588272 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
8588220 TGTGTGTTTA
*
8588230 ATAATATTGAATAGT
1 ATAATATTCAATAGT
*
8588245 ATAATATTCAATATT
1 ATAATATTCAATAGT
8588260 ATAATATTTCAAT
1 ATAATA-TTCAAT
8588273 TTAATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 19 0.76
16 6 0.24
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (15 bp):
ATAATATTCAATAGT
Found at i:8602400 original size:20 final size:24
Alignment explanation
Indices: 8602353--8602400 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 24
8602343 GAGATATTTT
*
8602353 ATTTTATTTATTATAACTACTATT
1 ATTTTATTTATTATAACTACTATA
8602377 ATTTTA-TT-TTATAA-TA-TATA
1 ATTTTATTTATTATAACTACTATA
8602397 ATTT
1 ATTT
8602401 AAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 7 0.30
21 2 0.09
22 6 0.26
23 2 0.09
24 6 0.26
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTTTATTTATTATAACTACTATA
Found at i:8603720 original size:43 final size:43
Alignment explanation
Indices: 8603670--8603985 Score: 309
Period size: 43 Copynumber: 7.3 Consensus size: 43
8603660 GTTTATTAGG
* *
8603670 AAAAACGCCGCTATAGAACATGGTCTTTAGCGACGCTTTTCCT
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCC
* *
8603713 AAAAACGCCACTAAAGAACATGGTCTTTAGC-AGCGCTTTACCC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGA-CGCTTTTCCC
* * * *
8603756 ACAAACGTCGCTAAAGAACATGGTTTTTAGCGGCGC-TTTCACC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTC-CC
* * * * *
8603799 AAGAACGCCACTAAAAAACATGGTCTTTAGC-AGCACTTTCTCTGC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGA-CGCTTT-TC-CC
* * * **
8603844 --AAACACCACTAAAGAACATGGTATTTAGCGGTGCTTTTCCC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCC
** * * *
8603885 GTAAACGCTGCTAAAGAACATGGTCTTTAGCGGCGCTTATCCC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCC
* *
8603928 AAAAACACCGCTAAAGAACATTGTCTTTAGCGACGCTTTTCCC
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCC
* *
8603971 ACAAACGTCGCTAAA
1 AAAAACGCCGCTAAA
8603986 ATTAACAGAT
Statistics
Matches: 220, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.00
42 6 0.03
43 208 0.95
44 2 0.01
45 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCC
Found at i:8603775 original size:86 final size:86
Alignment explanation
Indices: 8603672--8603977 Score: 348
Period size: 86 Copynumber: 3.6 Consensus size: 86
8603662 TTATTAGGAA
* * *
8603672 AAACGCCGCTATAGAACATGGTCTTTAGCGACGCTTTTCCTAAAAACGCCACTAAAGAACATGGT
1 AAACACCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTAAAGAACATGGT
8603737 CTTTAGCAGCGCTTTACCCAC
66 CTTTAGCAGCGCTTTACCCAC
** * * * *
8603758 AAACGTCGCTAAAGAACATGGTTTTTAGCGGCGC-TTTCACCAAGAACGCCACTAAAAAACATGG
1 AAACACCGCTAAAGAACATGGTCTTTAGCGACGCTTTTC-CCAAAAACGCCACTAAAGAACATGG
* **
8603822 TCTTTAGCAGCACTTT-CTCTGC
65 TCTTTAGCAGCGCTTTAC-CCAC
* * ** ** **
8603844 AAACACCACTAAAGAACATGGTATTTAGCGGTGCTTTTCCCGTAAACGCTGCTAAAGAACATGGT
1 AAACACCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTAAAGAACATGGT
* *
8603909 CTTTAGCGGCGC-TTATCCCAA
66 CTTTAGCAGCGCTTTA-CCCAC
* *
8603930 AAACACCGCTAAAGAACATTGTCTTTAGCGACGCTTTTCCCACAAACG
1 AAACACCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCCAAAAACG
8603978 TCGCTAAAAT
Statistics
Matches: 182, Mismatches: 33, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
85 7 0.04
86 170 0.93
87 5 0.03
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (86 bp):
AAACACCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCCAAAAACGCCACTAAAGAACATGGT
CTTTAGCAGCGCTTTACCCAC
Found at i:8603985 original size:129 final size:129
Alignment explanation
Indices: 8603670--8603977 Score: 390
Period size: 129 Copynumber: 2.4 Consensus size: 129
8603660 GTTTATTAGG
* *
8603670 AAAAACGCCGCTATAGAACATGGTCTTTAGCGACGCTTTTCCTAAAAACGCCACTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCTACAAACGCCACTAAAGAACATG
* *
8603735 GTCTTTAGCAGCGCTTTACCCACAAACGTCGCTAAAGAACATGGTTTTTAGCGGCGCTTTCACC
66 GTATTTAGCAGCGCTTTACCCACAAACGTCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCACC
* * * * * *
8603799 AAGAACGCCACTAAAAAACATGGTCTTTAGC-A-GCACTTTCTCTGCAAACACCACTAAAGAACA
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGC-TTTTC-CTACAAACGCCACTAAAGAACA
* * * **
8603862 TGGTATTTAGCGGTGCTTTTCCCGTAAACG-CTGCTAAAGAACATGGTCTTTAGCGGCGCTTATC
64 TGGTATTTAGCAGCGCTTTACCCACAAACGTC-GCTAAAGAACATGGTCTTTAGCGGCGCTT-TC
8603926 -CC
127 ACC
* * *
8603928 AAAAACACCGCTAAAGAACATTGTCTTTAGCGACGCTTTTCCCACAAACG
1 AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCTACAAACG
8603978 TCGCTAAAAT
Statistics
Matches: 149, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
127 2 0.01
128 6 0.04
129 132 0.89
130 7 0.05
131 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (129 bp):
AAAAACGCCGCTAAAGAACATGGTCTTTAGCGACGCTTTTCCTACAAACGCCACTAAAGAACATG
GTATTTAGCAGCGCTTTACCCACAAACGTCGCTAAAGAACATGGTCTTTAGCGGCGCTTTCACC
Found at i:8615488 original size:21 final size:20
Alignment explanation
Indices: 8615455--8615493 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8615445 TGCCACCAAA
8615455 ATTTGTTCAAAATAGCTTCC
1 ATTTGTTCAAAATAGCTTCC
*
8615475 ATTTGATTGAAAATAGCTT
1 ATTTG-TTCAAAATAGCTT
8615494 TAGGAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
ATTTGTTCAAAATAGCTTCC
Found at i:8618830 original size:24 final size:25
Alignment explanation
Indices: 8618803--8618866 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
8618793 TATCACTCTC
8618803 TAAATATTTTATATTTTAAT-TTTA
1 TAAATATTTTATATTTTAATGTTTA
*
8618827 TAAATTATTATTA-A-TTTAATGTTTG
1 TAAA-TATT-TTATATTTTAATGTTTA
8618852 TAAATATATTTATAT
1 TAAATAT-TTTATAT
8618867 ACATATTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
24 16 0.48
25 14 0.42
26 3 0.09
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (25 bp):
TAAATATTTTATATTTTAATGTTTA
Found at i:8618843 original size:25 final size:25
Alignment explanation
Indices: 8618803--8618867 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 25
8618793 TATCACTCTC
8618803 TAAA-TATTTTATATTTTAAT-TTTA
1 TAAATTATTTTATA-TTTAATGTTTA
*
8618827 TAAATTATTATTA-ATTTAATGTTTG
1 TAAATTATT-TTATATTTAATGTTTA
8618852 TAAATATATTTATATA
1 TAAAT-TATTT-TATA
8618868 CATATTAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
24 10 0.29
25 14 0.41
26 9 0.26
27 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (25 bp):
TAAATTATTTTATATTTAATGTTTA
Found at i:8620676 original size:31 final size:30
Alignment explanation
Indices: 8620640--8620708 Score: 75
Period size: 31 Copynumber: 2.3 Consensus size: 30
8620630 GATTAAATCA
*
8620640 AAATTAAAATTTCAAGTATATATTTGAACC
1 AAATTAAAATTTCAAGTATATAATTGAACC
* * * * *
8620670 ACAATTATAGTTTCACGTGTATAATTGCACC
1 A-AATTAAAATTTCAAGTATATAATTGAACC
8620701 AAATTAAA
1 AAATTAAA
8620709 GCTTATGTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (30 bp):
AAATTAAAATTTCAAGTATATAATTGAACC
Found at i:8621056 original size:20 final size:20
Alignment explanation
Indices: 8621015--8621053 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8621005 GATACCTTGA
8621015 GAAATAAAAAAAATTCAATT
1 GAAATAAAAAAAATTCAATT
*
8621035 GAAATAATAAAAA-TCAATT
1 GAAATAAAAAAAATTCAATT
8621054 TGACCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (20 bp):
GAAATAAAAAAAATTCAATT
Found at i:8624838 original size:41 final size:41
Alignment explanation
Indices: 8624793--8624893 Score: 148
Period size: 41 Copynumber: 2.4 Consensus size: 41
8624783 CTGCAAAAGA
* *
8624793 TAGAGCAATAGCGGCGCTTATGGGAAAGCGCCACTAAAGGT
1 TAGAGCAATAGCGGCGCTCATGGGAAAGCACCACTAAAGGT
*
8624834 TAGAGCAATAGCGGCGCTCATGGGAAAGCACCGCTAAAGGT
1 TAGAGCAATAGCGGCGCTCATGGGAAAGCACCACTAAAGGT
* *
8624875 CAGAGCAATAAGCGCCGCT
1 TAGAGCAAT-AGCGGCGCT
8624894 AAAGGTCAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 46 0.85
42 8 0.15
ACGTcount: A:0.32, C:0.23, G:0.31, T:0.15
Consensus pattern (41 bp):
TAGAGCAATAGCGGCGCTCATGGGAAAGCACCACTAAAGGT
Found at i:8624917 original size:24 final size:25
Alignment explanation
Indices: 8624859--8624917 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
8624849 GCTCATGGGA
* *
8624859 AAGCACCGCTAAAGGTCAGAGCAAT
1 AAGCGCCGCTAAAGGTCAAAGCAAT
8624884 AAGCGCCGCTAAAGGTCAAAGCAAT
1 AAGCGCCGCTAAAGGTCAAAGCAAT
*
8624909 -AGCGGCGCT
1 AAGCGCCGCT
8624918 TATGGGCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
24 8 0.26
25 23 0.74
ACGTcount: A:0.36, C:0.25, G:0.27, T:0.12
Consensus pattern (25 bp):
AAGCGCCGCTAAAGGTCAAAGCAAT
Found at i:8624929 original size:66 final size:66
Alignment explanation
Indices: 8624818--8624958 Score: 212
Period size: 66 Copynumber: 2.2 Consensus size: 66
8624808 GCTTATGGGA
* * *
8624818 AAGCGCCACTAAAGGTTAGAGCAATAGCGGCGCTCATGGGAAAGCACCGCTAAAGGTCAGAGCAA
1 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTCATGGGAAAGCACCGCTAAAGGTCAGAGCAA
8624883 T
66 T
* * *
8624884 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGCAAGCACCGCTAAAGGTCATAGCAA
1 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTCATGGGAAAGCACCGCTAAAGGTCAGAGCAA
8624949 T
66 T
*
8624950 -AGCGGCGCT
1 AAGCGCCGCT
8624959 TATGGGCAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
65 8 0.12
66 60 0.88
ACGTcount: A:0.33, C:0.24, G:0.29, T:0.14
Consensus pattern (66 bp):
AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTCATGGGAAAGCACCGCTAAAGGTCAGAGCAA
T
Found at i:8624935 original size:41 final size:41
Alignment explanation
Indices: 8624884--8625018 Score: 216
Period size: 41 Copynumber: 3.3 Consensus size: 41
8624874 TCAGAGCAAT
8624884 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGC
1 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGC
* *
8624925 AAGCACCGCTAAAGGTCATAGCAATAGCGGCGCTTATGGGC
1 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGC
* * * *
8624966 AAGCGCCGTTAAAGGTCAGAGCAATAGCGGTGCTTATGGGA
1 AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGC
8625007 AAGCGCCGCTAA
1 AAGCGCCGCTAA
8625019 TTTATTTAAA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 86 1.00
ACGTcount: A:0.30, C:0.23, G:0.31, T:0.16
Consensus pattern (41 bp):
AAGCGCCGCTAAAGGTCAAAGCAATAGCGGCGCTTATGGGC
Found at i:8624982 original size:107 final size:107
Alignment explanation
Indices: 8624796--8624991 Score: 311
Period size: 107 Copynumber: 1.8 Consensus size: 107
8624786 CAAAAGATAG
* *
8624796 AGCAATAGCGGCGCTTATGGGAAAGCGCCACTAAAGGTTAGAGCAATAGCGGCGCTCATGGGAAA
1 AGCAATAGCGGCGCTTATGGGAAAGCACCACTAAAGGTCAGAGCAATAGCGGCGCTCATGGGAAA
8624861 GCACCGCTAAAGGTCAGAGCAATAAGCGCCGCTAAAGGTCAA
66 GCACCGCTAAAGGTCAGAGCAATAAGCGCCGCTAAAGGTCAA
* * * * *
8624903 AGCAATAGCGGCGCTTATGGGCAAGCACCGCTAAAGGTCATAGCAATAGCGGCGCTTATGGGCAA
1 AGCAATAGCGGCGCTTATGGGAAAGCACCACTAAAGGTCAGAGCAATAGCGGCGCTCATGGGAAA
* *
8624968 GCGCCGTTAAAGGTCAGAGCAATA
66 GCACCGCTAAAGGTCAGAGCAATA
8624992 GCGGTGCTTA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 80 1.00
ACGTcount: A:0.32, C:0.22, G:0.30, T:0.15
Consensus pattern (107 bp):
AGCAATAGCGGCGCTTATGGGAAAGCACCACTAAAGGTCAGAGCAATAGCGGCGCTCATGGGAAA
GCACCGCTAAAGGTCAGAGCAATAAGCGCCGCTAAAGGTCAA
Found at i:8628798 original size:3 final size:3
Alignment explanation
Indices: 8628785--8628814 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8628775 AAGTTGTCCC
*
8628785 GAT GTT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
8628815 TATGCTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (3 bp):
GAT
Found at i:8630974 original size:43 final size:43
Alignment explanation
Indices: 8630920--8631019 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
8630910 TTTGTTAATG
* * *
8630920 TTAGCGGCGTTTGTGGGAAAAGCG-TGGCTAAAGACCATGTTCT
1 TTAGCGACGTTTGTGGGAAAAGAGCT-GCTAAAGACCATGGTCT
8630963 TTAGCGACGTTTGTGGGAAAAGAGCTGCTAAAGACCATGGTCT
1 TTAGCGACGTTTGTGGGAAAAGAGCTGCTAAAGACCATGGTCT
8631006 TTAGCGACGTTTGT
1 TTAGCGACGTTTGT
8631020 TCTTTAGCGA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
43 52 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (43 bp):
TTAGCGACGTTTGTGGGAAAAGAGCTGCTAAAGACCATGGTCT
Found at i:8631025 original size:17 final size:17
Alignment explanation
Indices: 8631003--8631036 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8630993 AAGACCATGG
8631003 TCTTTAGCGACGTTTGT
1 TCTTTAGCGACGTTTGT
8631020 TCTTTAGCGACGTTTGT
1 TCTTTAGCGACGTTTGT
8631037 GGGAAAAGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.47
Consensus pattern (17 bp):
TCTTTAGCGACGTTTGT
Found at i:8631030 original size:60 final size:60
Alignment explanation
Indices: 8630957--8631079 Score: 212
Period size: 60 Copynumber: 2.0 Consensus size: 60
8630947 CTAAAGACCA
8630957 TGTTCTTTAGCGACGTTTGTGGGAAAAGAG-CTGCTAAAGACCATGGTCTTTAGCGACGTT
1 TGTTCTTTAGCGACGTTTGTGGGAAAAGAGTC-GCTAAAGACCATGGTCTTTAGCGACGTT
* *
8631017 TGTTCTTTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGGTCTTTAGCGGCGTT
1 TGTTCTTTAGCGACGTTTGTGGGAAAAGAGTCGCTAAAGACCATGGTCTTTAGCGACGTT
8631077 TGT
1 TGT
8631080 GAGATAAGCC
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
60 59 0.98
61 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (60 bp):
TGTTCTTTAGCGACGTTTGTGGGAAAAGAGTCGCTAAAGACCATGGTCTTTAGCGACGTT
Found at i:8631095 original size:43 final size:42
Alignment explanation
Indices: 8631020--8631150 Score: 172
Period size: 43 Copynumber: 3.1 Consensus size: 42
8631010 CGACGTTTGT
* *
8631020 TCTTTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGG
1 TCTTTAGCGGCGTTTGTGGG-AAAGCGCCGCTAAAGACCATGG
* * * *
8631063 TCTTTAGCGGCGTTTGTGAGATAAGCCCCGCTAAAGATCATGA
1 TCTTTAGCGGCGTTTGTGGGA-AAGCGCCGCTAAAGACCATGG
* *
8631106 TCTTTAGCGGTGTTTGTGGGAAAACGCCGCTAAAGACCATGG
1 TCTTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGACCATGG
8631148 TCT
1 TCT
8631151 ATAATGGCGT
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
42 21 0.28
43 54 0.72
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (42 bp):
TCTTTAGCGGCGTTTGTGGGAAAGCGCCGCTAAAGACCATGG
Found at i:8631122 original size:103 final size:103
Alignment explanation
Indices: 8630920--8631114 Score: 291
Period size: 103 Copynumber: 1.9 Consensus size: 103
8630910 TTTGTTAATG
* * * *
8630920 TTAGCGGCGTTTGTGGGAAAAGCGTGGCTAAAGACCATGTTCTTTAGCGACGTTTGTGGGAAAAG
1 TTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGGTCTTTAGCGACGTTTGTGAGAAAAG
* * *
8630985 AGCTGCTAAAGACCATGGTCTTTAGCGACGTTTGTTCT
66 ACCCGCTAAAGACCATGATCTTTAGCGACGTTTGTTCT
* *
8631023 TTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGGTCTTTAGCGGCGTTTGTGAGATAAG
1 TTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGGTCTTTAGCGACGTTTGTGAGAAAAG
* *
8631088 CCCCGCTAAAGATCATGATCTTTAGCG
66 ACCCGCTAAAGACCATGATCTTTAGCG
8631115 GTGTTTGTGG
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
103 81 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (103 bp):
TTAGCGACGTTTGTGGGAAAAGCGTCGCTAAAGACCATGGTCTTTAGCGACGTTTGTGAGAAAAG
ACCCGCTAAAGACCATGATCTTTAGCGACGTTTGTTCT
Found at i:8632135 original size:30 final size:30
Alignment explanation
Indices: 8632091--8632235 Score: 150
Period size: 30 Copynumber: 4.8 Consensus size: 30
8632081 ATTTTTATGG
* *
8632091 TTGCTTACATAAGCTGACATTATAATCAG-A
1 TTGCTCACACAAGCTGACATTATAAT-AGAA
*
8632121 TTGCTCACACAAGCTGACATTATTATCAG-A
1 TTGCTCACACAAGCTGACATTATAAT-AGAA
* *
8632151 TTGCTCACACAAACTGACATTATAATTGAA
1 TTGCTCACACAAGCTGACATTATAATAGAA
* * * *
8632181 TTGTTCACAGAAGCTGACATTAAAATTGAA
1 TTGCTCACACAAGCTGACATTATAATAGAA
* * *
8632211 TTGTTCATACAAGCTAACATTATAA
1 TTGCTCACACAAGCTGACATTATAA
8632236 GCATGGTTAC
Statistics
Matches: 100, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
29 1 0.01
30 99 0.99
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (30 bp):
TTGCTCACACAAGCTGACATTATAATAGAA
Found at i:8632173 original size:60 final size:61
Alignment explanation
Indices: 8632061--8632202 Score: 162
Period size: 60 Copynumber: 2.3 Consensus size: 61
8632051 GGGAAAGTAA
* * * * * * * *
8632061 TGCTCACACAAGCTGGCAATATTTTTATGGTTGCTTACATAAGCTGACATTATAATCAG-AT
1 TGCTCACACAAGCTGACATTATTATCATGATTGCTCACACAAACTGACATTATAAT-AGAAT
*
8632122 TGCTCACACAAGCTGACATTATTATCA-GATTGCTCACACAAACTGACATTATAATTGAAT
1 TGCTCACACAAGCTGACATTATTATCATGATTGCTCACACAAACTGACATTATAATAGAAT
* *
8632182 TGTTCACAGAAGCTGACATTA
1 TGCTCACACAAGCTGACATTA
8632203 AAATTGAATT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 1 0.01
60 45 0.65
61 23 0.33
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.32
Consensus pattern (61 bp):
TGCTCACACAAGCTGACATTATTATCATGATTGCTCACACAAACTGACATTATAATAGAAT
Found at i:8633357 original size:19 final size:20
Alignment explanation
Indices: 8633333--8633372 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8633323 TAATTATGAG
8633333 TTAATT-AACCTTAATTAAT
1 TTAATTAAACCTTAATTAAT
*
8633352 TTAATTAAACTTTAATTAAT
1 TTAATTAAACCTTAATTAAT
8633372 T
1 T
8633373 AATCCTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATTAAACCTTAATTAAT
Found at i:8633869 original size:17 final size:19
Alignment explanation
Indices: 8633849--8633886 Score: 62
Period size: 17 Copynumber: 2.1 Consensus size: 19
8633839 TACAAATTAA
8633849 AATAATTAT-A-AAATAAG
1 AATAATTATAATAAATAAG
8633866 AATAATTATAATAAATAAG
1 AATAATTATAATAAATAAG
8633885 AA
1 AA
8633887 ATATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.47
18 1 0.05
19 9 0.47
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AATAATTATAATAAATAAG
Found at i:8633897 original size:16 final size:19
Alignment explanation
Indices: 8633849--8633897 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 19
8633839 TACAAATTAA
8633849 AATAATTAT--AAAATAAG
1 AATAATTATAAAAAATAAG
*
8633866 AATAATTATAATAAATAAG
1 AATAATTATAAAAAATAAG
8633885 -A-AA-TATAAAAAAT
1 AATAATTATAAAAAAT
8633898 CAATATGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 9 0.32
17 11 0.39
18 1 0.04
19 7 0.25
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (19 bp):
AATAATTATAAAAAATAAG
Found at i:8639671 original size:23 final size:22
Alignment explanation
Indices: 8639628--8639729 Score: 58
Period size: 21 Copynumber: 4.8 Consensus size: 22
8639618 CTGTTTTGAT
8639628 TGTTATTTTCGTGTTGTTTTTGC
1 TGTTATTTTC-TGTTGTTTTTGC
8639651 TGTTATTTT-TGTTGCTATTTT--
1 TGTTATTTTCTGTTG-T-TTTTGC
* **
8639672 TGTTGTTTT-TAATGTTGTTTGC
1 TGTTATTTTCTGTTGTT-TTTGC
* * *
8639694 TATT-TTTT-T-TTGTTTTGGT
1 TGTTATTTTCTGTTGTTTTTGC
8639713 TGTTATTTT-TGTTGTTT
1 TGTTATTTTCTGTTGTTT
8639730 GGATGTTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
19 7 0.11
20 13 0.20
21 27 0.42
22 4 0.06
23 13 0.20
ACGTcount: A:0.07, C:0.04, G:0.19, T:0.71
Consensus pattern (22 bp):
TGTTATTTTCTGTTGTTTTTGC
Found at i:8639721 original size:21 final size:20
Alignment explanation
Indices: 8639697--8639744 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
8639687 TGTTTGCTAT
*
8639697 TTTTTTTTGTTTTGGTTGTTA
1 TTTTTTTTG-TTTGGATGTTA
*
8639718 TTTTTGTTGTTTGGATGTTA
1 TTTTTTTTGTTTGGATGTTA
8639738 TTTTTTT
1 TTTTTTT
8639745 ATGCGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.06, C:0.00, G:0.19, T:0.75
Consensus pattern (20 bp):
TTTTTTTTGTTTGGATGTTA
Found at i:8639726 original size:12 final size:12
Alignment explanation
Indices: 8639621--8639728 Score: 78
Period size: 12 Copynumber: 8.8 Consensus size: 12
8639611 TTTTTTACTG
8639621 TTTTGATTGTTAT
1 TTTTG-TTGTTAT
* *
8639634 TTTCG-TGTTGT
1 TTTTGTTGTTAT
*
8639645 TTTTGCTGTTAT
1 TTTTGTTGTTAT
*
8639657 TTTTGTTGCTAT
1 TTTTGTTGTTAT
*
8639669 TTTTGTTGTTTT
1 TTTTGTTGTTAT
*
8639681 TAATGTTGTTTGCTAT
1 T--T-TTG-TTGTTAT
*
8639697 TTTT-TT-TTGT
1 TTTTGTTGTTAT
*
8639707 TTTGGTTGTTAT
1 TTTTGTTGTTAT
8639719 TTTTGTTGTT
1 TTTTGTTGTT
8639729 TGGATGTTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 15
0.71 0.15 0.15
Matches are distributed among these distances:
10 5 0.07
11 13 0.18
12 38 0.52
13 6 0.08
14 2 0.03
15 3 0.04
16 6 0.08
ACGTcount: A:0.07, C:0.04, G:0.19, T:0.70
Consensus pattern (12 bp):
TTTTGTTGTTAT
Found at i:8641350 original size:18 final size:18
Alignment explanation
Indices: 8641323--8641357 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8641313 CCTAATTTAG
8641323 TTTTACTTAAAATTTTCA
1 TTTTACTTAAAATTTTCA
* *
8641341 TTTTATTTAAACTTTTC
1 TTTTACTTAAAATTTTC
8641358 TTAGTAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTACTTAAAATTTTCA
Found at i:8646628 original size:42 final size:41
Alignment explanation
Indices: 8646548--8646630 Score: 98
Period size: 42 Copynumber: 2.0 Consensus size: 41
8646538 TACACGTAAA
**
8646548 AATTTAATTATGATTTAAATATATATTTAAAACTTTAATTTT
1 AATTTAATTATGATTTAAATATATAAATAAAAC-TTAATTTT
8646590 AATTTAATTATGCACGTTTAAATATATAAAT-AAA-TTAATTT
1 AATTTAATTATG-A--TTTAAATATATAAATAAAACTTAATTT
8646631 ATTTTTATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 19 0.53
43 1 0.03
44 3 0.08
45 13 0.36
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (41 bp):
AATTTAATTATGATTTAAATATATAAATAAAACTTAATTTT
Found at i:8649474 original size:11 final size:11
Alignment explanation
Indices: 8649458--8649482 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8649448 ATAACATGAG
8649458 TCAAGCCAATT
1 TCAAGCCAATT
8649469 TCAAGCCAATT
1 TCAAGCCAATT
8649480 TCA
1 TCA
8649483 CATTTTCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (11 bp):
TCAAGCCAATT
Found at i:8653024 original size:14 final size:14
Alignment explanation
Indices: 8652989--8653031 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
8652979 GGTCCCTCTA
8652989 TTATAC-TTAAATT
1 TTATACTTTAAATT
* *
8653002 TAAGA-TTTAAATT
1 TTATACTTTAAATT
8653015 TTATACTTTAAATT
1 TTATACTTTAAATT
8653029 TTA
1 TTA
8653032 ACATAATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (14 bp):
TTATACTTTAAATT
Found at i:8653687 original size:38 final size:35
Alignment explanation
Indices: 8653668--8653735 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
8653658 AATATATATT
*
8653668 ATTTTAAATATTCTTATTTATAAGCAAAAATAATC
1 ATTTTAAATATTATTATTTATAAGCAAAAATAATC
*
8653703 ATTTTAAATATTATTATTTTTAAG-AAAAA-AATC
1 ATTTTAAATATTATTATTTATAAGCAAAAATAATC
8653736 TTAATCAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 4 0.13
34 5 0.16
35 22 0.71
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (35 bp):
ATTTTAAATATTATTATTTATAAGCAAAAATAATC
Found at i:8664068 original size:29 final size:29
Alignment explanation
Indices: 8663886--8664250 Score: 333
Period size: 30 Copynumber: 12.3 Consensus size: 29
8663876 ATTTTTTTTT
* *
8663886 AAAATCACATTTTGACCCTAAAACTT-TCCC
1 AAAATTACATTTTAACCCT-AAACTTCT-CC
* * *
8663916 AAAATCAAATTTTAACCCCTAAACTTTTCC
1 AAAATTACATTTTAA-CCCTAAACTTCTCC
* * *
8663946 AAAATCATATTTTAACTTCTAAACCTT-TCC
1 AAAATTACATTTTAAC-CCTAAA-CTTCTCC
*
8663976 AAAATTACATTTTAACCCTTAAACTTCTCT
1 AAAATTACATTTTAACCC-TAAACTTCTCC
* *
8664006 AAAATTACATTTTGACCCTCAAACTTCTCT
1 AAAATTACATTTTAACCCT-AAACTTCTCC
* *
8664036 AAAACTACATTTTGACCCTAAACTTCTCC
1 AAAATTACATTTTAACCCTAAACTTCTCC
* *
8664065 AAAATTACATTTTAACCATTAAACTTTTTCC
1 AAAATTACATTTTAACC-CTAAAC-TTCTCC
*
8664096 AAAATTACATTTTAACCCCCAAACTTCT-C
1 AAAATTACATTTTAA-CCCTAAACTTCTCC
* *
8664125 AAAATCACATTTTAACCCCCAAACCTTCT-C
1 AAAATTACATTTTAA-CCCTAAA-CTTCTCC
* * * *
8664155 AAAATCACATTTTGACCCCAAACTTCTCT
1 AAAATTACATTTTAACCCTAAACTTCTCC
* * * *
8664184 AAAATCATATTTTAACCCCAAACTTTTCC
1 AAAATTACATTTTAACCCTAAACTTCTCC
* *
8664213 AAAATTACATTTTTACCCTTAAACTTTTCC
1 AAAATTACATTTTAACCC-TAAACTTCTCC
8664243 AAAATTAC
1 AAAATTAC
8664251 TTTGACCCTG
Statistics
Matches: 293, Mismatches: 29, Indels: 26
0.84 0.08 0.07
Matches are distributed among these distances:
28 5 0.02
29 100 0.34
30 154 0.53
31 32 0.11
32 2 0.01
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (29 bp):
AAAATTACATTTTAACCCTAAACTTCTCC
Found at i:8664148 original size:119 final size:118
Alignment explanation
Indices: 8663885--8664230 Score: 419
Period size: 119 Copynumber: 2.9 Consensus size: 118
8663875 AATTTTTTTT
* ** * * * * *
8663885 TAAAATCACATTTTGACCCTAAAACTTTCCCAAAATCAAATTTTAACCCCTAAACTTTTCCAAAA
1 TAAAATCACATTTTAACCCCCAAACCTTCTCAAAATCACATTTTGA-CCCTAAACTTCTCCAAAA
* * **
8663950 TCATATTTTAACTTCTAAACCTTTCCAAAATTACATTTTAACCCTTAAACTTCTC
65 TCATATTTTAACCT-TAAACTTTTCCAAAATTACATTTTAACCCCCAAACTTCTC
* * *
8664005 TAAAATTACATTTTGACCCTCAAA-CTTCTCTAAAA-CTACATTTTGACCCTAAACTTCTCCAAA
1 TAAAATCACATTTTAACCCCCAAACCTTCTC-AAAATC-ACATTTTGACCCTAAACTTCTCCAAA
* *
8664068 ATTACATTTTAACCATTAAACTTTTTCCAAAATTACATTTTAACCCCCAAACTTCTC
64 ATCATATTTTAACC-TTAAAC-TTTTCCAAAATTACATTTTAACCCCCAAACTTCTC
* *
8664125 -AAAATCACATTTTAACCCCCAAACCTTCTCAAAATCACATTTTGACCCCAAACTTCTCTAAAAT
1 TAAAATCACATTTTAACCCCCAAACCTTCTCAAAATCACATTTTGACCCTAAACTTCTCCAAAAT
** *
8664189 CATATTTTAACCCCAAACTTTTCCAAAATTACATTTTTACCC
66 CATATTTTAACCTTAAACTTTTCCAAAATTACATTTTAACCC
8664231 TTAAACTTTT
Statistics
Matches: 197, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
117 23 0.12
118 4 0.02
119 97 0.49
120 73 0.37
ACGTcount: A:0.37, C:0.27, G:0.01, T:0.35
Consensus pattern (118 bp):
TAAAATCACATTTTAACCCCCAAACCTTCTCAAAATCACATTTTGACCCTAAACTTCTCCAAAAT
CATATTTTAACCTTAAACTTTTCCAAAATTACATTTTAACCCCCAAACTTCTC
Found at i:8666429 original size:209 final size:208
Alignment explanation
Indices: 8666176--8667091 Score: 1146
Period size: 209 Copynumber: 4.4 Consensus size: 208
8666166 AATTGGTCTA
* *
8666176 CTTCTCTATATGTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
1 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
* **
8666241 CTATTTATTGCTTTGACTCACTTCTCTGTATCTCATTGGGAAGATGGGGTTTGAAGTTTCACTTA
66 CTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTTA
*
8666306 CACTT-AGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAATAAGATGACCACATC
131 CACTTGAGCTTCACTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAA-AAGATGACCACATC
* *
8666370 ATTTATTTTAATTCG
195 ATTGA-TTTAATCCG
8666385 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAT
1 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGA-
* * * * * *
8666450 CGTTTTTTTTGCGTTGACTCACTTCTCAGTATCTCATCAGAAAGATGGGGTTTGAAAG-TTCTA-
65 CCTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTG-AAGTTTC-AC
* * *
8666513 TT-CACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTCTGTATCTCATCAGAAAGATGATCA
128 TTACAC-TTGAGCTTCACTTCATCGATTTGGTCTACTTCTCTGTATCTCATCA-AAAGATGACCA
* *
8666577 CTTCATTGATTTAATCCA
191 CATCATTGATTTAATCCG
* * * * *
8666595 CTTCTCTGTATCTTATTAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGAC
1 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
* * * *
8666660 CTCTTTATTGCTTTGACTCACTTCTCTGTATCTTATTAGGAAGATAGGGTTTGAAGTTTCACTCA
66 CTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTTA
* * * *
8666725 CAC-TGAGCTTCGCTTCATCGATTTGGTCTACTTTTCTGTATCTCATCAGGAAGATGACCATATC
131 CACTTGAGCTTCACTTCATCGATTTGGTCTACTTCTCTGTATCTCATCA-AAAGATGACCACATC
*
8666789 ACTTGTTTTAATCCG
195 A-TTGATTTAATCCG
* * * *
8666804 CTTCTCTGTATCTCATCAAGAAGATGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGGC
1 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
* * * * * * *
8666869 CGCTTTATTGGTTCGAC-CGACTTCTTTGTATCTCATCAGGAAGATGAGGTTTGAATTTTCACTA
66 CTCTTTATTGCTTTGACTC-ACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTT
* * * * *
8666933 ACA-TTGAGCTGCACTTCAAT-GATTTGGTCTACTTCTCTGTATCTCATCGGAAAGATGATCGCC
130 ACACTTGAGCTTCACTTC-ATCGATTTGGTCTACTTCTCTGTATCTCATC-AAAAGATGACCACA
8666996 TCATTGATTTAATCCG
193 TCATTGATTTAATCCG
* * * * * * *
8667012 CTTCTCTATATCTCATCAGAAAGACGGATTTGATTCACTTCTCTATATCTCATCAAGAAGACGAT
1 CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
* *
8667077 CGCTTTATTACTTTG
66 CTCTTTATTGCTTTG
8667092 GATGATTGTA
Statistics
Matches: 609, Mismatches: 84, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
208 137 0.22
209 287 0.47
210 124 0.20
211 60 0.10
212 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (208 bp):
CTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGAC
CTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATCAGGAAGATGGGGTTTGAAGTTTCACTTA
CACTTGAGCTTCACTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAAAAGATGACCACATCA
TTGATTTAATCCG
Found at i:8666682 original size:85 final size:85
Alignment explanation
Indices: 8666546--8666703 Score: 237
Period size: 85 Copynumber: 1.9 Consensus size: 85
8666536 GAATTGGTCT
* *
8666546 ACTTCTCTGTATCTCATCAGAAAGATGATCACTTCATTGATTTAATCCACTTCTCTGTATCTTAT
1 ACTTCTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTTAT
8666611 TAGGAAGACGGATTTGGTTC
66 TAGGAAGACGGATTTGGTTC
* * * * *
8666631 ACTTCTCTATATCTCATCAGGAAGATGACCTCTTTATTGCTTTGA-CTCACTTCTCTGTATCTTA
1 ACTTCTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATC-CACTTCTCTGTATCTTA
8666695 TTAGGAAGA
65 TTAGGAAGA
8666704 TAGGGTTTGA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
84 1 0.02
85 64 0.98
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.39
Consensus pattern (85 bp):
ACTTCTCTATATCTCATCAGAAAGATGACCACTTCATTGATTTAATCCACTTCTCTGTATCTTAT
TAGGAAGACGGATTTGGTTC
Found at i:8666835 original size:419 final size:417
Alignment explanation
Indices: 8666175--8667091 Score: 1343
Period size: 419 Copynumber: 2.2 Consensus size: 417
8666165 GAATTGGTCT
* * * *
8666175 ACTTCTCTATATGTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCTCATCAGGAAGATGA
1 ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGA
* * * *
8666240 CCTATTTATTGCTTTGACTCACTTCTCTGTATCTCATTGGGAAGATGGGGTTTGAAGTTTCACTT
66 CCTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATTAGGAAGATAGGGTTTGAAGTTTCACTC
* *
8666305 ACACTTAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAATAAGATGACCACATC
131 ACACTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACATC
* * *
8666370 ATTTATTTTAATTCGCTTCTCTATATCTCATCAGGAAGACGGATTTGGTCCACTTCTCTGTATCT
196 ACTTATTTTAATCCGCTTCTCTATATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCT
* * * *
8666435 CATCAGGAAGATGATCGTTTTTTTTGCGTT-GACTC-ACTTCTCAGTATCTCATCAGAAAGATGG
261 CATCAGGAAGATGACCG-CTTTATTG-GTTCGAC-CGACTTCTCAGTATCTCATCAGAAAGATGA
* * * *
8666498 GGTTTGAAAGTTCTATTCACATTGAGCTTCACTTCATTGAATTGGTCTACTTCTCTGTATCTCAT
323 GGTTTGAAAGTTC-ACTAACATTGAGCTGCACTTCAATGAATTGGTCTACTTCTCTGTATCTCAT
*
8666563 CAGAAAGATGATCACTTCATTGATTTAATCC
387 CAGAAAGATGATCACCTCATTGATTTAATCC
* * *
8666594 ACTTCTCTGTATCTTATTAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGA
1 ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGA
*
8666659 CCTCTTTATTGCTTTGACTCACTTCTCTGTATCTTATTAGGAAGATAGGGTTTGAAGTTTCACTC
66 CCTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATTAGGAAGATAGGGTTTGAAGTTTCACTC
* * *
8666724 ACACTGAGCTTCGCTTCATCGATTTGGTCTACTTTTCTGTATCTCATCAGGAAGATGACCATATC
131 ACACTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACATC
* * *
8666789 ACTTGTTTTAATCCGCTTCTCTGTATCTCATCAAGAAGATGGATTTGGTCCACTTCTCTGTATCT
196 ACTTATTTTAATCCGCTTCTCTATATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCT
* ** *
8666854 CATCAGGAAGATGGCCGCTTTATTGGTTCGACCGACTTCTTTGTATCTCATCAGGAAGATGAGGT
261 CATCAGGAAGATGACCGCTTTATTGGTTCGACCGACTTCTCAGTATCTCATCAGAAAGATGAGGT
** * *
8666919 TTGAATTTTCACTAACATTGAGCTGCACTTCAATGATTTGGTCTACTTCTCTGTATCTCATCGGA
326 TTGAAAGTTCACTAACATTGAGCTGCACTTCAATGAATTGGTCTACTTCTCTGTATCTCATCAGA
*
8666984 AAGATGATCGCCTCATTGATTTAATCC
391 AAGATGATCACCTCATTGATTTAATCC
* * * * *
8667011 GCTTCTCTATATCTCATCAGAAAGACGGATTTGATTCACTTCTCTATATCTCATCAAGAAGACGA
1 ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGA
* * *
8667076 TCGCTTTATTACTTTG
66 CCTCTTTATTGCTTTG
8667092 GATGATTGTA
Statistics
Matches: 444, Mismatches: 52, Indels: 6
0.88 0.10 0.01
Matches are distributed among these distances:
417 148 0.33
418 44 0.10
419 252 0.57
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (417 bp):
ACTTCTCTATATCTCATCAGGAAGACGGATTTGGTTCACTTCTCTATATCTCATCAGGAAGATGA
CCTCTTTATTGCTTTGACTCACTTCTCTGTATCTCATTAGGAAGATAGGGTTTGAAGTTTCACTC
ACACTGAGCTTCGCTTCATCGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACATC
ACTTATTTTAATCCGCTTCTCTATATCTCATCAAGAAGACGGATTTGGTCCACTTCTCTGTATCT
CATCAGGAAGATGACCGCTTTATTGGTTCGACCGACTTCTCAGTATCTCATCAGAAAGATGAGGT
TTGAAAGTTCACTAACATTGAGCTGCACTTCAATGAATTGGTCTACTTCTCTGTATCTCATCAGA
AAGATGATCACCTCATTGATTTAATCC
Found at i:8667195 original size:39 final size:38
Alignment explanation
Indices: 8667089--8667195 Score: 99
Period size: 39 Copynumber: 2.8 Consensus size: 38
8667079 CTTTATTACT
* *
8667089 TTGGATGATTGTAATCTGCCTCATGATCGGGGTAAAAG
1 TTGGATGACTGTAATCTGCCCCATGATCGGGGTAAAAG
* * * * * * *
8667127 GTCGAGTGGCTGCTATTC-GTCCCAAGATCGGGGTAAGAG
1 TTGGA-TGACTG-TAATCTGCCCCATGATCGGGGTAAAAG
8667166 ATTGGATGACTGTAATCTGCCCCATGATCG
1 -TTGGATGACTGTAATCTGCCCCATGATCG
8667196 AAAAGATGAT
Statistics
Matches: 50, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
38 7 0.14
39 36 0.72
40 7 0.14
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (38 bp):
TTGGATGACTGTAATCTGCCCCATGATCGGGGTAAAAG
Found at i:8667263 original size:41 final size:42
Alignment explanation
Indices: 8667212--8667299 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
8667202 TGATGTGTCC
*
8667212 TCAATTTGCCCCTCTTGATTA-GGGGTAAAAGATTGAAATCT
1 TCAATCTGCCCCTCTTGATTAGGGGGTAAAAGATTGAAATCT
* *
8667253 TCAATCTGCCCTTCTTGATTAGGGGGTAAAAGATTGGAATCT
1 TCAATCTGCCCCTCTTGATTAGGGGGTAAAAGATTGAAATCT
8667295 TCAAT
1 TCAAT
8667300 TTGCAGTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
41 19 0.44
42 24 0.56
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (42 bp):
TCAATCTGCCCCTCTTGATTAGGGGGTAAAAGATTGAAATCT
Found at i:8667658 original size:48 final size:49
Alignment explanation
Indices: 8667556--8667658 Score: 111
Period size: 48 Copynumber: 2.1 Consensus size: 49
8667546 ATCTTTACGA
* * * *
8667556 CCTCAACCTTTTCCTTCAACTCTTCATGGTACCGGGTTCGCCGTTGCGG
1 CCTCAACCTTTTCCATCAACTCTTCATGGAACCGGATTCGCCATTGCGG
* * * *
8667605 TCTCAA-CTTTTCCCATC-ACTTTTCATGGAATCGGATTCGCCATTGTGG
1 CCTCAACCTTTT-CCATCAACTCTTCATGGAACCGGATTCGCCATTGCGG
8667653 CCTCAA
1 CCTCAA
8667659 TCCTCCCTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
48 35 0.80
49 9 0.20
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.34
Consensus pattern (49 bp):
CCTCAACCTTTTCCATCAACTCTTCATGGAACCGGATTCGCCATTGCGG
Found at i:8667841 original size:147 final size:145
Alignment explanation
Indices: 8667688--8667976 Score: 355
Period size: 147 Copynumber: 2.0 Consensus size: 145
8667678 TAAGGTACTA
* * * * *
8667688 GGTTCGCCGTTGCGACCTCAACATTTTCCATCATATTTCATGGTACCAGATTTACCGTTGC-AGC
1 GGTTCGCCATTGCGACCTCAACATTTCCCATCACATTTCATAGTACCAGATTCACCGTTGCGA-C
* * **** *
8667752 CTTAATCCTTCCTATCACATATTCTAAGGTATTGGGTTCACCATTGCGGCCTCAACCTTTCCCTT
65 CTCAAT-CTTCCCATCACAT-TTCTAAGGTACCAAGTTCACCATTGCGACCTCAACCTTTCCCTT
8667817 CAAATCTTAATGGTATCG
128 CAAATCTTAATGGTATCG
* * * **
8667835 GGTTCGCCATTGCGACCTCAACCTTTCCCATCACATTTCATAGTATCGGATTCGTCGTTGCGACC
1 GGTTCGCCATTGCGACCTCAACATTTCCCATCACATTTCATAGTACCAGATTCACCGTTGCGACC
* * *
8667900 TCAATCTTCCCATCACATTTCTGAGGTACCAAGTTCCCCGTTGCGACCTCAACCTTTCCCTTCAA
66 TCAATCTTCCCATCACATTTCTAAGGTACCAAGTTCACCATTGCGACCTCAACCTTTCCCTTCAA
*
8667965 ATCTTCATGGTA
131 ATCTTAATGGTA
8667977 CCGAGTTTAT
Statistics
Matches: 120, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
145 50 0.42
146 12 0.10
147 57 0.47
148 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.33
Consensus pattern (145 bp):
GGTTCGCCATTGCGACCTCAACATTTCCCATCACATTTCATAGTACCAGATTCACCGTTGCGACC
TCAATCTTCCCATCACATTTCTAAGGTACCAAGTTCACCATTGCGACCTCAACCTTTCCCTTCAA
ATCTTAATGGTATCG
Found at i:8667900 original size:48 final size:49
Alignment explanation
Indices: 8667553--8668068 Score: 247
Period size: 49 Copynumber: 10.6 Consensus size: 49
8667543 TTCATCTTTA
* * * * *
8667553 CGACCTCAACCTTTTCCTTCA-ACTCTTCATGGTACCGGGTTCGCCGTTG
1 CGACCTCAACCTTTCCCATCACA-TCTTCATAGTATCGGATTCGCCGTTG
** * * * * *
8667602 CGGTCTCAACTTTTCCCATCAC-TTTTCATGGAATCGGATTCGCCATTG
1 CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGATTCGCCGTTG
* * * *
8667650 TGGCCTCAATCC--TCCCTATCACATCTT-TTAAGGTACTAGG-TTCGCCGTTG
1 CGACCTCAA-CCTTTCCC-ATCACATCTTCAT-A-GTA-TCGGATTCGCCGTTG
* * * * * * **
8667700 CGACCTCAACATTTTCCATCATAT-TTCATGGTACCAGATTTACCGTTG
1 CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGATTCGCCGTTG
* * * * * * *
8667748 C-AGCCTTAATCC-TTCCTATCACATATTC-TAAGGTATTGGGTTCACCATTG
1 CGA-CCTCAA-CCTTTCCCATCACATCTTCAT-A-GTATCGGATTCGCCGTTG
* * * * * * *
8667798 CGGCCTCAACCTTTCCCTTCAAATCTTAATGGTATCGGGTTCGCCATTG
1 CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGATTCGCCGTTG
*
8667847 CGACCTCAACCTTTCCCATCACAT-TTCATAGTATCGGATTCGTCGTTG
1 CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGATTCGCCGTTG
* ** *
8667895 CGACCTCAATC-TTCCCATCACAT-TTC-TGAGGTA-CCAAGTTCCCCGTTG
1 CGACCTCAACCTTTCCCATCACATCTTCAT-A-GTATCGGA-TTCGCCGTTG
* * * * ***
8667943 CGACCTCAACCTTTCCCTTCAAATCTTCATGGTA-CCGAGTTTATCGTTG
1 CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGA-TTCGCCGTTG
* * * *
8667992 CGGCCTCAACCTTTCCCGTCACATCTTC-TAAGGTATCGGGTTCGCCGTTA
1 CGACCTCAACCTTTCCCATCACATCTTCAT-A-GTATCGGATTCGCCGTTG
* * * *
8668042 CGGCCTCAACCTTCCCCTTCAAATCTT
1 CGACCTCAACCTTTCCCATCACATCTT
8668069 TATGTTTTTT
Statistics
Matches: 352, Mismatches: 87, Indels: 55
0.71 0.18 0.11
Matches are distributed among these distances:
46 1 0.00
47 24 0.07
48 112 0.32
49 115 0.33
50 90 0.26
51 10 0.03
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.33
Consensus pattern (49 bp):
CGACCTCAACCTTTCCCATCACATCTTCATAGTATCGGATTCGCCGTTG
Found at i:8667953 original size:96 final size:99
Alignment explanation
Indices: 8667795--8668068 Score: 254
Period size: 96 Copynumber: 2.8 Consensus size: 99
8667785 GGGTTCACCA
* * * * ** * *
8667795 TTGCGGCCTCAACCTTTCCCTTCAAATC-T-TAATGGTATCGGGTTCGCCATTGCGACCTCAACC
1 TTGCGACCTCAACCTTTCCCATCACATCTTCTAA-GGTACCAAGTTCCCCGTTGCGACCTCAACC
* * *
8667858 TTTCCCATCACAT-TTCATAGTATCG-GATTCGTCG
65 TTTCCCATCAAATCTTCATAGTACCGAG-TTCATCG
* *
8667892 TTGCGACCTCAATC-TTCCCATCACAT-TTCTGAGGTACCAAGTTCCCCGTTGCGACCTCAACCT
1 TTGCGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCAAGTTCCCCGTTGCGACCTCAACCT
* * *
8667955 TTCCCTTCAAATCTTCATGGTACCGAGTTTATCG
66 TTCCCATCAAATCTTCATAGTACCGAGTTCATCG
* * * ** * * *
8667989 TTGCGGCCTCAACCTTTCCCGTCACATCTTCTAAGGTATCGGGTTCGCCGTTACGGCCTCAACCT
1 TTGCGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCAAGTTCCCCGTTGCGACCTCAACCT
* *
8668054 TCCCCTTCAAATCTT
66 TTCCCATCAAATCTT
8668069 TATGTTTTTT
Statistics
Matches: 144, Mismatches: 27, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
96 47 0.33
97 41 0.28
98 12 0.08
99 44 0.31
ACGTcount: A:0.19, C:0.33, G:0.16, T:0.32
Consensus pattern (99 bp):
TTGCGACCTCAACCTTTCCCATCACATCTTCTAAGGTACCAAGTTCCCCGTTGCGACCTCAACCT
TTCCCATCAAATCTTCATAGTACCGAGTTCATCG
Found at i:8669029 original size:13 final size:14
Alignment explanation
Indices: 8669007--8669037 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
8668997 CGACCTCTCC
8669007 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
8669021 TTTTC-TTTTCTTT
1 TTTTCTTTTTCTTT
8669034 TTTT
1 TTTT
8669038 ATTTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:8672136 original size:16 final size:16
Alignment explanation
Indices: 8672115--8672180 Score: 53
Period size: 16 Copynumber: 3.9 Consensus size: 16
8672105 GGATTTTGGG
8672115 CAAGTATCATTAATAA
1 CAAGTATCATTAATAA
* *
8672131 CAAGTATAAAATATATAAA
1 CAAGTAT-CATTA-AT-AA
*
8672150 TCAA-TAATCATTAATGA
1 -CAAGT-ATCATTAATAA
8672167 CAAGTATCATTAAT
1 CAAGTATCATTAAT
8672181 TTAAAATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
16 19 0.49
17 5 0.13
18 4 0.10
19 6 0.15
20 5 0.13
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.32
Consensus pattern (16 bp):
CAAGTATCATTAATAA
Found at i:8676287 original size:50 final size:49
Alignment explanation
Indices: 8675990--8676497 Score: 336
Period size: 49 Copynumber: 10.4 Consensus size: 49
8675980 TATTTGAAGA
* * * * * * *
8675990 GAAACGTTGAGGCCGCAACGGTGAACCTGCTACCTTAGAAGATGTGACGG
1 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCAT-GAAGATGTGATGG
* * *** * *
8676040 TG-AAGGTTGAGG-CTGCAACGGAGAATCTAATACCATGAAGATTTGAAGG
1 -GAAAGGTTGAGGTC-GCAACGGCGAACCCGGTACCATGAAGATGTGATGG
* * * * * * * *
8676089 GAAAGGTTGAGGCCACAACGGTGAACCTGGTACC-TCAAAAATATGATAG
1 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCAT-GAAGATGTGATGG
* * * * * *
8676138 AAAAGATTGA-GACTGCAACGACGAATCTGGTACCATGAA-ATGTGATGG
1 GAAAGGTTGAGGTC-GCAACGGCGAACCCGGTACCATGAAGATGTGATGG
* * * * *
8676186 AAAAGGTTGGGGTCGCAATGGCGAACCCGGTACCATGAAGATTTGAAGG
1 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCATGAAGATGTGATGG
* * * * *
8676235 GAAAGGTAGAGGTCGCAATGGCAAACCCAGTACCTTAGAAGATGTGATGG
1 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCAT-GAAGATGTGATGG
* ** *
8676285 G-AAGGATTGAGGTTGCAACAACGAATCCGGTACCATGAA-ATGTGATGG
1 GAAAGG-TTGAGGTCGCAACGGCGAACCCGGTACCATGAAGATGTGATGG
*
8676333 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGG
1 GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCAT-GAAGATGTGATGG
* * * * * * * *
8676383 G-GAGGATTGAAGCCTCAATGGCGAATCCGATTCCATGAA-ATGTGATGG
1 GAAAGG-TTGAGGTCGCAACGGCGAACCCGGTACCATGAAGATGTGATGG
* * *
8676431 GAAAGGTTGAGG-CTGCAATGACGAACCCGGTACCATGAAGA-GTTGAAGG
1 GAAAGGTTGAGGTC-GCAACGGCGAACCCGGTACCATGAAGATG-TGATGG
* *
8676480 AAAAGGTTAAGGTCGCAA
1 GAAAGGTTGAGGTCGCAA
8676498 AGATGAACTA
Statistics
Matches: 360, Mismatches: 78, Indels: 40
0.75 0.16 0.08
Matches are distributed among these distances:
47 1 0.00
48 111 0.31
49 153 0.43
50 94 0.26
51 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.19
Consensus pattern (49 bp):
GAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCATGAAGATGTGATGG
Found at i:8676331 original size:147 final size:146
Alignment explanation
Indices: 8676070--8676375 Score: 396
Period size: 147 Copynumber: 2.1 Consensus size: 146
8676060 GAGAATCTAA
* ** **
8676070 TACCATGAAGATTTGAAGGGAAAGGTTGAGGCCACAACGGTGAACCTGGTACCTCAAAAATATGA
1 TACCATGAAGATTTGAAGGGAAAGGTAGAGGCCACAACGGCAAACCCAGTACCTCAAAAATATGA
* * *
8676135 TAGAAAAGATTGAGACTGCAACGACGAATCTGGTACCATGAAATGTGATGGAAAAGGTTGGGGTC
66 TAGAAAAGATTGAGACTGCAACAACGAATCCGGTACCATGAAATGTGATGGAAAAGGTTGAGGTC
*
8676200 GCAATGGCGAACCCGG
131 GCAACGGCGAACCCGG
* * * * * *
8676216 TACCATGAAGATTTGAAGGGAAAGGTAGAGGTCGCAATGGCAAACCCAGTACCTTAGAAGATGTG
1 TACCATGAAGATTTGAAGGGAAAGGTAGAGGCCACAACGGCAAACCCAGTACCTCA-AAAATATG
* * * ** *
8676281 ATGGGAAGGATTGAGGTTGCAACAACGAATCCGGTACCATGAAATGTGATGGGAAAGGTTGAGGT
65 ATAGAAAAGATTGAGACTGCAACAACGAATCCGGTACCATGAAATGTGATGGAAAAGGTTGAGGT
8676346 CGCAACGGCGAACCCGG
130 CGCAACGGCGAACCCGG
*
8676363 TACCTTAGAAGAT
1 TACCAT-GAAGAT
8676376 GTGATGGGGA
Statistics
Matches: 136, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
146 47 0.35
147 83 0.61
148 6 0.04
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.19
Consensus pattern (146 bp):
TACCATGAAGATTTGAAGGGAAAGGTAGAGGCCACAACGGCAAACCCAGTACCTCAAAAATATGA
TAGAAAAGATTGAGACTGCAACAACGAATCCGGTACCATGAAATGTGATGGAAAAGGTTGAGGTC
GCAACGGCGAACCCGG
Found at i:8676425 original size:245 final size:245
Alignment explanation
Indices: 8676020--8676497 Score: 590
Period size: 245 Copynumber: 2.0 Consensus size: 245
8676010 GTGAACCTGC
* * *
8676020 TACCTTAGAAGATGTGACGGTGAAGGTTGAGGCTGCAACGGAGAATCTAATACCATGAAGATTTG
1 TACCTTAGAAGATGTGACGGTGAAGGTTGAGGCTGCAACGAAGAATCCAATACCATGAAGATGTG
* *
8676085 AAGGGAAAGGTTGAGGCCACAACGGTGAACCTGGTACCTCAAAAATATGATAGAAAAGATTGAGA
66 AAGGGAAAGGTTGAGGCCACAACGGCGAACCCGGTACCTCAAAAATATGATAGAAAAGATTGAGA
* * * *
8676150 CTGCAACGACGAATCTGGTACCATGAAATGTGATGGAAAAGGTTG-GGGTCGCAATGGCGAACCC
131 CTGCAACGACGAATCCGATACCATGAAATGTGATGGAAAAGGTTGAGGCT-GCAATGACGAACCC
* *
8676214 GGTACCATGAAGATTTGAAGGGAAAGG-TAGAGGTCGCAATGGCAAACCCAG
195 GGTACCATGAAGAGTTGAAGGAAAAGGTTA-AGGTCGCAATGGCAAACCCAG
* * **
8676265 TACCTTAGAAGATGTGATGG-GAAGGATTGAGGTTGCAAC-AACGAATCCGGTACCATGAA-ATG
1 TACCTTAGAAGATGTGACGGTGAAGG-TTGAGGCTGCAACGAA-GAATCCAATACCATGAAGATG
* * * * * * * ** *
8676327 TGATGGGAAAGGTTGAGGTCGCAACGGCGAACCCGGTACCTTAGAAGATGTGATGGGGAGGATTG
64 TGAAGGGAAAGGTTGAGGCCACAACGGCGAACCCGGTACCTCA-AAAATATGATAGAAAAGATTG
* * * * *
8676392 AAGCCT-CAATGGCGAATCCGATTCCATGAAATGTGATGGGAAAGGTTGAGGCTGCAATGACGAA
128 -AGACTGCAACGACGAATCCGATACCATGAAATGTGATGGAAAAGGTTGAGGCTGCAATGACGAA
8676456 CCCGGTACCATGAAGAGTTGAAGGAAAAGGTTAAGGTCGCAA
192 CCCGGTACCATGAAGAGTTGAAGGAAAAGGTTAAGGTCGCAA
8676498 AGATGAACTA
Statistics
Matches: 197, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
244 45 0.23
245 143 0.73
246 9 0.05
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (245 bp):
TACCTTAGAAGATGTGACGGTGAAGGTTGAGGCTGCAACGAAGAATCCAATACCATGAAGATGTG
AAGGGAAAGGTTGAGGCCACAACGGCGAACCCGGTACCTCAAAAATATGATAGAAAAGATTGAGA
CTGCAACGACGAATCCGATACCATGAAATGTGATGGAAAAGGTTGAGGCTGCAATGACGAACCCG
GTACCATGAAGAGTTGAAGGAAAAGGTTAAGGTCGCAATGGCAAACCCAG
Found at i:8676807 original size:42 final size:41
Alignment explanation
Indices: 8676744--8676875 Score: 212
Period size: 41 Copynumber: 3.2 Consensus size: 41
8676734 ATTAAAACTG
*
8676744 CAGATTGAAGATTTCAATCTTTTACCCCATAATCAAGAGGGA
1 CAGATTGAAGATTCCAATCTTTTACCCC-TAATCAAGAGGGA
*
8676786 CAGATTGAAGATTCCAGTCTTTTACCCCTAATCAAGA-GGA
1 CAGATTGAAGATTCCAATCTTTTACCCCTAATCAAGAGGGA
*
8676826 GCAGATTGAAGATTCCAATCTTTTACCCCTAATCAAGAGGGG
1 -CAGATTGAAGATTCCAATCTTTTACCCCTAATCAAGAGGGA
8676868 CAGATTGA
1 CAGATTGA
8676876 GGACACACTA
Statistics
Matches: 84, Mismatches: 4, Indels: 5
0.90 0.04 0.05
Matches are distributed among these distances:
40 3 0.04
41 53 0.63
42 28 0.33
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.27
Consensus pattern (41 bp):
CAGATTGAAGATTCCAATCTTTTACCCCTAATCAAGAGGGA
Found at i:8677496 original size:160 final size:161
Alignment explanation
Indices: 8677276--8677620 Score: 446
Period size: 161 Copynumber: 2.1 Consensus size: 161
8677266 GATGTGGTCA
* * * * * *
8677276 TCTTCCTGATGAGATACAGAAAAGTAGACCAAATCGATGAAGCGAAGCTCAGTGTGAGTGAAAC-
1 TCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCGAAGCTCAATATGAGTGAAACT
*
8677340 TTCAAACCCT-ATC-TTCTTGATGAGATACAGAGAAGTGAGTCAAAGCAATAAAGAGGTCATCTT
66 TTC-AACCCTCATCTTTC-TAATGAGATACAGAGAAGTGAGTCAAAGCAATAAAGAGGTCATCTT
*
8677403 CCTGATGAGATAT-AGAGAAGTGGACCAAATTCG
129 CCTGATGAGATATGA-AGAAGTGGACCAAATCCG
* * * *
8677436 TCTTCTTAATGAGATACAGAGAAGTAGACCGATTCAACGAAGTGAAGCTCAATATGAGTGAAACT
1 TCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCGAAGCTCAATATGAGTGAAACT
* ** * * * **
8677501 TTCAAGCCTCATCTTTCTAATGAGATACTTAGAAGTGGGTCAAAGGAATAAAGCGGTCATCTTTT
66 TTCAACCCTCATCTTTCTAATGAGATACAGAGAAGTGAGTCAAAGCAATAAAGAGGTCATCTTCC
8677566 TGATGAGATATGAAGAAGTGGACCAAATCCG
131 TGATGAGATATGAAGAAGTGGACCAAATCCG
*
8677597 TCTTCCTGATGAGATACAGAGAAG
1 TCTTCCTAATGAGATACAGAGAAG
8677621 CGGATTAAAA
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
160 59 0.37
161 96 0.60
162 4 0.03
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (161 bp):
TCTTCCTAATGAGATACAGAGAAGTAGACCAAATCAACGAAGCGAAGCTCAATATGAGTGAAACT
TTCAACCCTCATCTTTCTAATGAGATACAGAGAAGTGAGTCAAAGCAATAAAGAGGTCATCTTCC
TGATGAGATATGAAGAAGTGGACCAAATCCG
Found at i:8677955 original size:370 final size:364
Alignment explanation
Indices: 8677120--8677993 Score: 829
Period size: 370 Copynumber: 2.4 Consensus size: 364
8677110 AGATACATCC
* * * * * * * *
8677120 TGATAAGATACAGAGAAGT-AGATCAATTCAATGAAGTGAAGCTCAATGTGAATGAAACTTCCAA
1 TGATGAGATAAAGAGAAGTAAG-CCAAATCAATGAAG-AAAACTCAATATGAGTGAAACTT-CAA
*
8677184 ACCCCATCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCTTGATGAGATACAGAGA
63 ACCCCATCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATACAGAGA
*
8677249 AGCGGATTAAAACAAGTGATGTGGTCATCTTCCTGATGAGATACAGAAAAGTAGACCAAATCGAT
128 AGCGGATTAAAACAAGTGATGTGGTCATCTTCCTGATGAGATACAGAAAAGTAAACCAAATCGAT
* * * * * *
8677314 GAAGCGAAGCTCAGTGTGAGTGAAACTTCAAACCCTATCTTCTTGATGAGATACAGAGAAGTGAG
193 GAAACGAAACTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAAAGAAGTGAG
* * *
8677379 TCAAAGCAATAAAGAGGTCATCTTCCTGATGAGATATAGAGAAGTGGACCAAATTCGTCTTCTTA
258 TCAAAGCAATAAAGAGGTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAATTCGTCTTCCTA
* * * *
8677444 ATGAGATACAGAGAAGTAGACCGATTCAACGAAGTGAAGCTCAA
323 ATGAGATACAAAGAAGT--ACCGATTAAACAAAGAGAAGCTCAA
* *** ** ** * * * * * *
8677488 T-ATGAG-TGAA-A-CTTTCAAGCCTCATCTTTCTAATGAGATACTTAGA-AGTGGGTCAAAGGA
1 TGATGAGATAAAGAGAAGT-AAGCCAAATCAAT-GAA-GA-AAACTCA-ATA-TGAGTGAAA--C
* ** * * *
8677548 AT-AAAGCGGTCATCTTTTTGATGAGATA-TGAAGAAGTGGACCAAATCCGTCTTCCTGATGAGA
58 TTCAAA-C-CCCATCTTCTTGATGAGATACAG-AGAAGTGGACCAAATCCATCTTCCTGATGAGA
*
8677611 TACAGAGAAGCGGATTAAAACAAGTGATGTGGTCATCTT-CTGATGAGATACAGAGAAGTAAACC
120 TACAGAGAAGCGGATTAAAACAAGTGATGTGGTCATCTTCCTGATGAGATACAGAAAAGTAAACC
*
8677675 AAATCGATGAAACGAAACTCAATGTGAGTGAAACTTCGAACCCCCATCTTCCTGATGAGATA-AT
185 AAATCGATGAAACGAAACTCAATGTGAGTGAAACTTC-AAACCCCATCTTCCTGATGAGATACA-
* * * * *
8677739 AAGAAGTGGGTCAAAGTAATAAAGCGGTCGTCTTCCTGATGAGATACAAAGAAGTGGACTAAA-T
248 AAGAAGTGAGTCAAAGCAATAAAGAGGTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAATT
* * **
8677803 CTGTCTTCCTGATGAGATACAAAGAA-T-CGGATTAAAACAAATGAGACAGTCATCTTCT
313 C-GTCTTCCTAATGAGATACAAAGAAGTACCGATT-AAACAAA-GAGA-AG-C-TC--AA
8677861 TGATGAGATAAAGAGAAGTAAGCCAAATCAATGAAGCAAAACTCAATATGAGTGAAACTTCAAAC
1 TGATGAGATAAAGAGAAGTAAGCCAAATCAATGAAG-AAAACTCAATATGAGTGAAACTTCAAAC
* ** ** * * *
8677926 CCCATCTTCCTGATTCGATACAGAGAAGTGGGTCAAAGTAATCATCTTCTTGATGAGATACAAAG
65 CCCATCTTCTTGATGAGATACAGAGAAGTGGACCAAA-T--CCATCTTCCTGATGAGATACAGAG
8677991 AAG
127 AAG
8677994 TAGACCGAGA
Statistics
Matches: 391, Mismatches: 82, Indels: 61
0.73 0.15 0.11
Matches are distributed among these distances:
364 1 0.00
365 5 0.01
366 11 0.03
367 14 0.04
368 14 0.04
369 65 0.17
370 211 0.54
371 6 0.02
372 3 0.01
373 32 0.08
374 12 0.03
375 6 0.02
376 10 0.03
377 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (364 bp):
TGATGAGATAAAGAGAAGTAAGCCAAATCAATGAAGAAAACTCAATATGAGTGAAACTTCAAACC
CCATCTTCTTGATGAGATACAGAGAAGTGGACCAAATCCATCTTCCTGATGAGATACAGAGAAGC
GGATTAAAACAAGTGATGTGGTCATCTTCCTGATGAGATACAGAAAAGTAAACCAAATCGATGAA
ACGAAACTCAATGTGAGTGAAACTTCAAACCCCATCTTCCTGATGAGATACAAAGAAGTGAGTCA
AAGCAATAAAGAGGTCATCTTCCTGATGAGATACAAAGAAGTGGACCAAATTCGTCTTCCTAATG
AGATACAAAGAAGTACCGATTAAACAAAGAGAAGCTCAA
Found at i:8677964 original size:209 final size:209
Alignment explanation
Indices: 8677436--8677967 Score: 676
Period size: 209 Copynumber: 2.5 Consensus size: 209
8677426 ACCAAATTCG
* * * * * *
8677436 TCTTCTTAATGAGATACAGAGAAGT-AGACCGATTCAACGAAGTGAAGCTCAATATGAGTGAAAC
1 TCTTCTTGATGAGATACAGAGAAGTAAG-CCAAATCAATGAAGCGAAACTCAATATGAGTGAAAC
* * * * ** * *
8677500 TTTCAAGCCTCATCTTTCTAATGAGATACTTAGAAGTGGGTCAAAGGAATAAAGCGGTCATCTTT
65 -TTCAAACCCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTC
* ** *
8677565 TTGATGAGATATGAAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAGAGAAGCGGATTAAA
129 CTGATGAGATACAAAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAAAGAAGCGGATTAAA
* **
8677630 ACAAGTGATGTGGTCA
194 ACAAATGATGCAGTCA
* * * *
8677646 TCTTC-TGATGAGATACAGAGAAGTAAACCAAATCGATGAAACGAAACTCAATGTGAGTGAAACT
1 TCTTCTTGATGAGATACAGAGAAGTAAGCCAAATCAATGAAGCGAAACTCAATATGAGTGAAACT
* *
8677710 TCGAACCCCCATCTTCCTGATGAGATA-ATAAGAAGTGGGTCAAAGTAATAAAGCGGTCGTCTTC
66 TC-AAACCCCATCTTCCTGATGAGATACA-AAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTC
* * *
8677774 CTGATGAGATACAAAGAAGTGGACTAAATCTGTCTTCCTGATGAGATACAAAGAATCGGATTAAA
129 CTGATGAGATACAAAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAAAGAAGCGGATTAAA
8677839 ACAAATGA-GACAGTCA
194 ACAAATGATG-CAGTCA
* *
8677855 TCTTCTTGATGAGATAAAGAGAAGTAAGCCAAATCAATGAAGCAAAACTCAATATGAGTGAAACT
1 TCTTCTTGATGAGATACAGAGAAGTAAGCCAAATCAATGAAGCGAAACTCAATATGAGTGAAACT
** *
8677920 TCAAACCCCATCTTCCTGATTCGATACAGAGAAGTGGGTCAAAGTAAT
66 TCAAACCCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGTAAT
8677968 CATCTTCTTG
Statistics
Matches: 277, Mismatches: 39, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
208 4 0.01
209 211 0.76
210 62 0.22
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (209 bp):
TCTTCTTGATGAGATACAGAGAAGTAAGCCAAATCAATGAAGCGAAACTCAATATGAGTGAAACT
TCAAACCCCATCTTCCTGATGAGATACAAAGAAGTGGGTCAAAGTAATAAAGCGGTCATCTTCCT
GATGAGATACAAAGAAGTGGACCAAATCCGTCTTCCTGATGAGATACAAAGAAGCGGATTAAAAC
AAATGATGCAGTCA
Found at i:8679666 original size:29 final size:29
Alignment explanation
Indices: 8679628--8680026 Score: 303
Period size: 30 Copynumber: 13.6 Consensus size: 29
8679618 ATTTTCTTTA
* *
8679628 AAAATAACATTTTGACCTCAAACTTTCCC
1 AAAATTACATTTTGACCTCAAACTTTTCC
* * *
8679657 AAAATCACATTTTGACCCCTAAACTTTCCC
1 AAAATTACATTTTGACCTC-AAACTTTTCC
* * *
8679687 AAAATTAAATTTTAACC-CTAAAC-TTCCC
1 AAAATTACATTTTGACCTC-AAACTTTTCC
* *
8679715 AAAATCACATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCTC-AAACTTTTCC
*
8679745 AAAATTACATTTT-ATCC-CTAAACTTTTCT
1 AAAATTACATTTTGA-CCTC-AAACTTTTCC
* * *
8679774 AAAATTATATTTTGACCCTTAAACTTTT-T
1 AAAATTACATTTTGA-CCTCAAACTTTTCC
* * *
8679803 AAAATTCCATTTTGACCCTTAAACTTTTCT
1 AAAATTACATTTTGA-CCTCAAACTTTTCC
* *
8679833 AAAATTACATTTTAACCCTCAAACTTTTCT
1 AAAATTACATTTTGA-CCTCAAACTTTTCC
** * * * *
8679863 AAAATTATGTTTTAACCCTTAAACTTCTCA
1 AAAATTACATTTTGA-CCTCAAACTTTTCC
* *
8679893 AAAATCACA-TTTGACCTCTAAACCTTTT-T
1 AAAATTACATTTTGACCTC-AAA-CTTTTCC
* *
8679922 AAAATCACATTTTAACC-CTAAACTTCTT-C
1 AAAATTACATTTTGACCTC-AAACTT-TTCC
*
8679951 AAAATTACATTTTGACCTCAAACTTTTCT
1 AAAATTACATTTTGACCTCAAACTTTTCC
* *
8679980 AAAATTACATTTTTACCCTTAAACTTTTCC
1 AAAATTACATTTTGA-CCTCAAACTTTTCC
**
8680010 AAAATTATGTTTTGACC
1 AAAATTACATTTTGACC
8680027 ATTTAATTTC
Statistics
Matches: 314, Mismatches: 42, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.09
29 140 0.45
30 147 0.47
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.39
Consensus pattern (29 bp):
AAAATTACATTTTGACCTCAAACTTTTCC
Found at i:8679683 original size:30 final size:30
Alignment explanation
Indices: 8679628--8680026 Score: 370
Period size: 29 Copynumber: 13.6 Consensus size: 30
8679618 ATTTTCTTTA
* * *
8679628 AAAATAACATTTTGACCTC-AAACTTTCCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* *
8679657 AAAATCACATTTTGACCCCTAAACTTTCCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* * *
8679687 AAAATTAAATTTT-AACCCTAAAC-TTCCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
*
8679715 AAAATCACATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* *
8679745 AAAATTACATTTT-ATCCCTAAACTTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* * *
8679774 AAAATTATATTTTGACCCTTAAACTTTT-T
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* * *
8679803 AAAATTCCATTTTGACCCTTAAACTTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* *
8679833 AAAATTACATTTT-AACCCTCAAACTTTTCT
1 AAAATTACATTTTGACCCCT-AAACTTTTCC
** * * * *
8679863 AAAATTATGTTTTAACCCTTAAACTTCTCA
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* * *
8679893 AAAATCACA-TTTGACCTCTAAACCTTTT-T
1 AAAATTACATTTTGACCCCTAAA-CTTTTCC
* *
8679922 AAAATCACATTTT-AACCCTAAACTTCTT-C
1 AAAATTACATTTTGACCCCTAAACTT-TTCC
* *
8679951 AAAATTACATTTTGACCTC-AAACTTTTCT
1 AAAATTACATTTTGACCCCTAAACTTTTCC
* *
8679980 AAAATTACATTTTTACCCTTAAACTTTTCC
1 AAAATTACATTTTGACCCCTAAACTTTTCC
**
8680010 AAAATTATGTTTTGACC
1 AAAATTACATTTTGACC
8680027 ATTTAATTTC
Statistics
Matches: 309, Mismatches: 48, Indels: 25
0.81 0.13 0.07
Matches are distributed among these distances:
28 21 0.07
29 154 0.50
30 130 0.42
31 4 0.01
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCTAAACTTTTCC
Found at i:8680015 original size:59 final size:60
Alignment explanation
Indices: 8679628--8680026 Score: 417
Period size: 59 Copynumber: 6.8 Consensus size: 60
8679618 ATTTTCTTTA
* * * * * * * *
8679628 AAAATAACATTTTGA-CCTCAAACTTTCCCAAAATCACATTTTGACCCCTAAACTTTCCC
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTCTAAACTTTTCT
* * * * *
8679687 AAAATTAAATTTTAACCC-TAAAC-TTCCCAAAATCACATTTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTCTAAACTTTTCT
* * *
8679745 AAAATTACATTTTATCCC-TAAACTTTTCTAAAATTATATTTTGACC-CTTAAACTTTT-T
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTC-TAAACTTTTCT
* * * *
8679803 AAAATTCCATTTTGACCCTTAAACTTTTCTAAAATTACATTTTAACC-CTCAAACTTTTCT
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTCT-AAACTTTTCT
** * * *
8679863 AAAATTATGTTTTAACCCTTAAACTTCTCAAAAATCACA-TTTGACCTCTAAACCTTTT-T
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTCTAAA-CTTTTCT
*
8679922 AAAATCACATTTTAACCC-TAAACTTCTT-CAAAATTACATTTTGACCTC-AAACTTTTCT
1 AAAATTACATTTTAACCCTTAAACTT-TTCCAAAATTACATTTTGACCTCTAAACTTTTCT
* **
8679980 AAAATTACATTTTTACCCTTAAACTTTTCCAAAATTATGTTTTGACC
1 AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACC
8680027 ATTTAATTTC
Statistics
Matches: 292, Mismatches: 35, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
57 5 0.02
58 109 0.37
59 136 0.47
60 42 0.14
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.39
Consensus pattern (60 bp):
AAAATTACATTTTAACCCTTAAACTTTTCCAAAATTACATTTTGACCTCTAAACTTTTCT
Found at i:8691238 original size:13 final size:13
Alignment explanation
Indices: 8691220--8691244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8691210 ATGGAAAGAA
8691220 AAAAAATATTTTT
1 AAAAAATATTTTT
8691233 AAAAAATATTTT
1 AAAAAATATTTT
8691245 CACACTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AAAAAATATTTTT
Found at i:8697607 original size:21 final size:20
Alignment explanation
Indices: 8697583--8697638 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 20
8697573 AGAAATTCGG
8697583 TTTAAATAATAAAAAAATAAA
1 TTTAAAT-ATAAAAAAATAAA
* *
8697604 TTTAAGTATAGAAAATATAAA
1 TTTAAATATA-AAAAAATAAA
8697625 TATT-AATATAAAAA
1 T-TTAAATATAAAAA
8697639 TATTTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 7 0.23
21 21 0.70
22 2 0.07
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (20 bp):
TTTAAATATAAAAAAATAAA
Found at i:8698965 original size:6 final size:6
Alignment explanation
Indices: 8698956--8698984 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8698946 TATAAGAAAC
8698956 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
8698985 AACCTGTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:8702431 original size:20 final size:21
Alignment explanation
Indices: 8702393--8702436 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
8702383 TATATGTAAA
8702393 AATAATATAAAATATAAATTT
1 AATAATATAAAATATAAATTT
8702414 AATAGATAT-AAA-ATAAATTT
1 AATA-ATATAAAATATAAATTT
8702434 AAT
1 AAT
8702437 TAAACAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 11 0.50
21 7 0.32
22 4 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (21 bp):
AATAATATAAAATATAAATTT
Found at i:8702557 original size:20 final size:19
Alignment explanation
Indices: 8702532--8702574 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
8702522 TTCAAATACT
8702532 AAAAAAT-ATTAATTTTTTCA
1 AAAAAATAATT-ATTTTTT-A
8702552 AAAAAATAATTATTTTTTA
1 AAAAAATAATTATTTTTTA
8702571 AAAA
1 AAAA
8702575 TCATTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.23
20 14 0.64
21 3 0.14
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAAAATAATTATTTTTTA
Found at i:8707110 original size:58 final size:58
Alignment explanation
Indices: 8707021--8707391 Score: 462
Period size: 58 Copynumber: 6.4 Consensus size: 58
8707011 GGATACCTGA
*
8707021 GGGGGCAAAATGGTAA-TTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTT
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTT
* ** * *
8707078 TGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTT-TGAGGTTT
*
8707137 AGGGGTAAAATGGTAA-TTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGGTTT
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGA-GGTTT
* ** * *
8707195 TGGGGTAAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTT-TGAGGTTT
*
8707254 GGGGGTAAAATGGTAA-TTTTGGCAAAATTGGGGTTAAAAATGGAA-TTTTGAAAAGTTT
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTG--AGGTTT
*** ** * * *
8707312 GGGGGTAAAATGGTAATTTTTGTTGAAATCAGGGTTAAAAATGGAATTTTAGAATGTTC
1 GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTG-AGGTTT
*
8707371 GAGGGTAAAATGGTAATTTTT
1 GGGGGTAAAATGGTAATTTTT
8707392 AGAAGTTTCG
Statistics
Matches: 274, Mismatches: 31, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
56 1 0.00
57 19 0.07
58 128 0.47
59 120 0.44
60 6 0.02
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (58 bp):
GGGGGTAAAATGGTAATTTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTT
Found at i:8707231 original size:117 final size:115
Alignment explanation
Indices: 8707022--8707390 Score: 605
Period size: 117 Copynumber: 3.2 Consensus size: 115
8707012 GATACCTGAG
*
8707022 GGGGCAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTTTGGGGTAAA
1 GGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTTTGGGGTAAA
8707087 ATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
66 ATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
8707137 AGGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGGTTTTGGGGTA
1 -GGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGA-GGTTTTGGGGTA
8707202 AAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
64 AAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
* *
8707254 GGGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAA-TTTTGAAAAGTTTGGGGGT
1 -GGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTG--AGGTTTTGGGGT
* ** * *
8707318 AAAATGGTAATTTTTGTTGAAATCAGGGTTAAAAATGGAATTTTAGAATGTTC
63 AAAATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
8707371 GAGGGTAAAATGGTAATTTT
1 G-GGGTAAAATGGTAATTTT
8707391 TAGAAGTTTC
Statistics
Matches: 240, Mismatches: 9, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
116 56 0.23
117 183 0.76
118 1 0.00
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (115 bp):
GGGGTAAAATGGTAATTTTGGCAAAATTGGGGTTAAAAATGGAATTTTTGAGGTTTTGGGGTAAA
ATGGTAATTTTTGGTGAAATTGGGGTTAAAAATGGAATTTTAGGAGGTTC
Found at i:8707346 original size:29 final size:29
Alignment explanation
Indices: 8707314--8707391 Score: 72
Period size: 29 Copynumber: 2.7 Consensus size: 29
8707304 AAAAGTTTGG
*
8707314 GGGTAAAATGGTAATTTTTG-TTGAAATC-A
1 GGGTAAAATGGTAATTTTTGAATG--ATCGA
* *
8707343 GGGTTAAAAATGG-AATTTTAGAATGTTCGA
1 GGG-T-AAAATGGTAATTTTTGAATGATCGA
8707373 GGGTAAAATGGTAATTTTT
1 GGGTAAAATGGTAATTTTT
8707392 AGAAGTTTCG
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
28 7 0.17
29 12 0.30
30 12 0.30
31 9 0.22
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.37
Consensus pattern (29 bp):
GGGTAAAATGGTAATTTTTGAATGATCGA
Found at i:8707448 original size:29 final size:30
Alignment explanation
Indices: 8707360--8707449 Score: 89
Period size: 29 Copynumber: 3.0 Consensus size: 30
8707350 AAATGGAATT
8707360 TTAG-AATGTTCGAGGGT-AAAATGGTAATTT-
1 TTAGAAAT-TTCG-GGGTCAAAAT-GTAATTTC
* * *
8707390 TTAGAAGTTTCGGGGTCAGAATTTAATTTC
1 TTAGAAATTTCGGGGTCAAAATGTAATTTC
*
8707420 TTA-AAATTTTGGGGTCAAAATGTAATTTC
1 TTAGAAATTTCGGGGTCAAAATGTAATTTC
8707449 T
1 T
8707450 GGACTGTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
29 33 0.66
30 15 0.30
31 2 0.04
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (30 bp):
TTAGAAATTTCGGGGTCAAAATGTAATTTC
Found at i:8707713 original size:162 final size:161
Alignment explanation
Indices: 8707540--8707854 Score: 513
Period size: 162 Copynumber: 2.0 Consensus size: 161
8707530 GATTAAAATG
* * * *
8707540 TAAATCTTGAAAAATTCTTGGGCCAATTTCGTAATTAAGTAAAAGTTGATTTAGGGATTAAATTA
1 TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAAGGATTAAATTA
* **
8707605 AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAGCCAGAAAGTGACACGTAGCAGCCCC
66 AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAG-CAAAAAAAGACACGTAGCAGCCCC
8707670 TGATGCAGTCAAACAGTCAAAGGACTAATTTA
130 TGATGCAGTCAAACAGTCAAAGGACTAATTTA
*
8707702 TAAACCTTGAAAAATTATTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAAGGATTAAATTA
1 TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAAGGATTAAATTA
* * *
8707767 AAACAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTGGCAGCCTCT
66 AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTAGCAGCCCCT
*
8707832 GGTGCAGTCAAACAGTCAAAGGA
131 GATGCAGTCAAACAGTCAAAGGA
8707855 TTAAATTGAA
Statistics
Matches: 141, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
161 42 0.30
162 99 0.70
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (161 bp):
TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAAGGATTAAATTA
AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTAGCAGCCCCT
GATGCAGTCAAACAGTCAAAGGACTAATTTA
Found at i:8708652 original size:3 final size:3
Alignment explanation
Indices: 8708644--8708716 Score: 130
Period size: 3 Copynumber: 24.7 Consensus size: 3
8708634 TTCTTTTTCG
8708644 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
8708692 TTA TTA TTA TT- TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
8708717 TAATATGTAA
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 65 0.97
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8709515 original size:6 final size:6
Alignment explanation
Indices: 8709504--8709570 Score: 77
Period size: 6 Copynumber: 11.7 Consensus size: 6
8709494 GAATTTATAA
* *
8709504 TAAATT TAAATT TAAA-T TAAATC CAAATT TAAA-T TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
8709550 TAAA-A TAAATT TAATTT TAAA
1 TAAATT TAAATT TAAATT TAAA
8709571 ACAAATTCAA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
5 14 0.28
6 36 0.72
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (6 bp):
TAAATT
Found at i:8709523 original size:11 final size:11
Alignment explanation
Indices: 8709495--8709549 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 11
8709485 TTGGACTTTG
8709495 AATTTATAA-TA
1 AATTTA-AATTA
8709506 AATTTAAATTTA
1 AATTTAAA-TTA
*
8709518 AA-TTAAATCCA
1 AATTTAAAT-TA
8709529 AATTTAAATTA
1 AATTTAAATTA
8709540 AATTTAAATT
1 AATTTAAATT
8709550 TAAAATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
10 3 0.08
11 25 0.66
12 10 0.26
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:8709571 original size:17 final size:17
Alignment explanation
Indices: 8709495--8709577 Score: 103
Period size: 17 Copynumber: 4.9 Consensus size: 17
8709485 TTGGACTTTG
*
8709495 AATTTATAATAAATTTA
1 AATTTAAAATAAATTTA
* **
8709512 AATTTAAATTAAATCCA
1 AATTTAAAATAAATTTA
*
8709529 AATTTAAATTAAATTTA
1 AATTTAAAATAAATTTA
8709546 AATTTAAAATAAATTTA
1 AATTTAAAATAAATTTA
* *
8709563 ATTTTAAAACAAATT
1 AATTTAAAATAAATT
8709578 CAAAATGGTT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 57 1.00
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTAAAATAAATTTA
Found at i:8710030 original size:38 final size:37
Alignment explanation
Indices: 8709979--8710153 Score: 117
Period size: 38 Copynumber: 4.6 Consensus size: 37
8709969 GATCTTGCTC
*
8709979 TTACTTCAATTTCAGAGATAAAGACTTGATATCCAGTT
1 TTACTTCAATTTCAGAGATAAAGACATG-TATCCAGTT
* * ** *
8710017 TTACTTCAATTTCAAGAGGAT-AGGAAATG-ATCTTGCTC
1 TTACTTCAATTTC-AGA-GATAAAGACATGTATCCAG-TT
* *
8710055 TTACTTCAATTTCAGAGATAAAGACGTGTTATCCA-CT
1 TTACTTCAATTTCAGAGATAAAGACATG-TATCCAGTT
* * * ** *
8710092 CTACTTCAATTTCAAGAGGAT-AGGAAATG-ATCTTGCTC
1 TTACTTCAATTTC-AGA-GATAAAGACATGTATCCAG-TT
8710130 TTACTTCAATTTCAGAGATAAAGA
1 TTACTTCAATTTCAGAGATAAAGA
8710154 TGTGTTTTCC
Statistics
Matches: 103, Mismatches: 23, Indels: 23
0.69 0.15 0.15
Matches are distributed among these distances:
36 9 0.09
37 30 0.29
38 47 0.46
39 14 0.14
40 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (37 bp):
TTACTTCAATTTCAGAGATAAAGACATGTATCCAGTT
Found at i:8710137 original size:75 final size:76
Alignment explanation
Indices: 8709891--8710482 Score: 735
Period size: 69 Copynumber: 8.1 Consensus size: 76
8709881 TTGGTGCTTT
* ** * * * *
8709891 ATCTTACTCTTACTTCAATTTCAGAGGGACGAAGGCTTGTTATCCAGCTTTACTTCAATTTCAAG
1 ATCTTGCTCTTACTTCAATTTCAGA--GATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAG
8709956 AGGATAGGAAAATG
64 AGGATAGG-AAATG
* * ** *
8709970 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACTTGATATCCAGTTTTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
8710035 GATAGGAAATG
66 GATAGGAAATG
8710046 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
8710110 GATAGGAAATG
66 GATAGGAAATG
* *
8710121 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGATGTGTTTTCC-ACTCTACTTCAATTTCAAGAG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
* *
8710185 G--ACG--ACG
66 GATAGGAAATG
* * *
8710192 ---TTGCTCTTACTTCAATTTTAGAGATAGAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
8710254 GATAGGAAATG
66 GATAGGAAATG
* * *
8710265 ATCTTGCTCTTACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
*
8710330 GAT--G--ACG
66 GATAGGAAATG
* * *
8710337 ---TTGCTCTTACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
*
8710399 GAT--G--ACG
66 GATAGGAAATG
*
8710406 ---TTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGCG
1 ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
*
8710468 GATAGGAAAAG
66 GATAGGAAATG
8710479 ATCT
1 ATCT
8710483 GGCTGTGGTT
Statistics
Matches: 468, Mismatches: 30, Indels: 33
0.88 0.06 0.06
Matches are distributed among these distances:
68 36 0.08
69 153 0.33
71 5 0.01
72 2 0.00
73 6 0.01
74 1 0.00
75 92 0.20
76 108 0.23
77 41 0.09
79 24 0.05
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (76 bp):
ATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAG
GATAGGAAATG
Found at i:8710317 original size:38 final size:38
Alignment explanation
Indices: 8710275--8710463 Score: 140
Period size: 38 Copynumber: 5.3 Consensus size: 38
8710265 ATCTTGCTCT
8710275 TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
1 TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
** * * *
8710313 TACTTCAATTTCA-AG-CGGA-T-GACG-T-TGC-TCT-
1 TACTTCAATTTCAGAGACAAAGTCG-TGTTATCCAACTC
8710344 TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
1 TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
** * * *
8710382 TACTTCAATTTCA-AG-CGGA-T-GACG-T-TGC-TCT-
1 TACTTCAATTTCAGAGACAAAGTCG-TGTTATCCAACTC
* *
8710413 TACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTC
1 TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
8710451 TACTTCAATTTCA
1 TACTTCAATTTCA
8710464 AGCGGATAGG
Statistics
Matches: 111, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
31 26 0.23
32 8 0.07
33 7 0.06
34 7 0.06
35 8 0.07
36 8 0.07
37 8 0.07
38 39 0.35
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (38 bp):
TACTTCAATTTCAGAGACAAAGTCGTGTTATCCAACTC
Found at i:8710351 original size:31 final size:31
Alignment explanation
Indices: 8710313--8710425 Score: 102
Period size: 31 Copynumber: 3.4 Consensus size: 31
8710303 TATCCAACTC
8710313 TACTTCAATTTCAAGCGGATGACGTTGCTCT
1 TACTTCAATTTCAAGCGGATGACGTTGCTCT
** * * *
8710344 TACTTCAATTTCAGAGACAAAGTCG-TGTTATCCAACT
1 TACTTCAATTTCA-AG-CGGA-T-GACG-T-TGC-TCT
8710381 CTACTTCAATTTCAAGCGGATGACGTTGCTCT
1 -TACTTCAATTTCAAGCGGATGACGTTGCTCT
8710413 TACTTCAATTTCA
1 TACTTCAATTTCA
8710426 GAGATAAAGA
Statistics
Matches: 63, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
31 26 0.41
32 4 0.06
33 4 0.06
34 4 0.06
35 4 0.06
36 4 0.06
37 4 0.06
38 13 0.21
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (31 bp):
TACTTCAATTTCAAGCGGATGACGTTGCTCT
Found at i:8722649 original size:29 final size:29
Alignment explanation
Indices: 8722617--8722984 Score: 121
Period size: 29 Copynumber: 12.6 Consensus size: 29
8722607 CCGGGGGGGC
8722617 AAAATGGTAATTTTGGAAAAATCGGGGTT
1 AAAATGGTAATTTTGGAAAAATCGGGGTT
* **** *
8722646 AAAAATGG-AATTTTTGAGGCTTCGGGGGT
1 -AAAATGGTAATTTTGGAAAAATCGGGGTT
* ** *
8722675 AAAATGGTACTTTTTGGTGAAATCGAGGTT
1 AAAATGGTA-ATTTTGGAAAAATCGGGGTT
* ***
8722705 AAAAATAG-AATTTTAGG-AGGTTCGAGGG-T
1 -AAAATGGTAATTTT-GGAAAAATCG-GGGTT
** * *
8722734 AAAATGGTAATTTTGGTGAAATTGAGGTT
1 AAAATGGTAATTTTGGAAAAATCGGGGTT
** **
8722763 AAAAAAAG-AATTTTGGAAAGTTCGAGGG-T
1 -AAAATGGTAATTTTGGAAAAATCG-GGGTT
* ** * *
8722792 AAAATGTTAATTTTTGGTGAAATTGAGGTT
1 AAAATGGTAA-TTTTGGAAAAATCGGGGTT
** *
8722822 AAAAATGG-AATTTTGGAAAGTTTAGGGG-T
1 -AAAATGGTAATTTTGGAAA-AATCGGGGTT
** *
8722851 AAAATGGTAATTTTAGGTGAAACCGGGGTTT
1 AAAATGGTAATTTT-GGAAAAATCGGGG-TT
* ** *
8722882 AAAATGG-AATTTTTGAAAGTTTAGGGG-T
1 AAAATGGTAATTTTGGAAA-AATCGGGGTT
** **
8722910 AAAATGGTAATTTTGGTGAAATTAGGGTT
1 AAAATGGTAATTTTGGAAAAATCGGGGTT
* ***
8722939 AAAATGG-AATTTTAGAAGGTTC-GGGTT
1 AAAATGGTAATTTTGGAAAAATCGGGGTT
8722966 AAAATGGTAATTTTTGGAA
1 AAAATGGTAA-TTTTGGAA
8722985 GTTTCGGGGT
Statistics
Matches: 234, Mismatches: 80, Indels: 49
0.64 0.22 0.13
Matches are distributed among these distances:
27 12 0.05
28 50 0.21
29 92 0.39
30 60 0.26
31 20 0.09
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTGGAAAAATCGGGGTT
Found at i:8722705 original size:59 final size:58
Alignment explanation
Indices: 8722611--8722982 Score: 367
Period size: 59 Copynumber: 6.4 Consensus size: 58
8722601 GGATACCCGG
* * ** * * *
8722611 GGGGGCAAAATGGTAATTTTGGAAAAATCGGGGTTAAAAATGGAATTTTTG-AGGCTTC
1 GGGGGTAAAATGGTATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAG-TTC
* *
8722669 GGGGGTAAAATGGTACTTTTTGGTGAAATCGAGGTTAAAAATAGAATTTTAGG-AGGTTC
1 GGGGGTAAAATGGTA-TTTTTGGTGAAATCGAGGTTAAAAATGGAATTTT-GGAAAGTTC
* * * **
8722728 GAGGGTAAAATGGTAATTTTGGTGAAATTGAGGTTAAAAAAAGAATTTTGGAAAGTTC
1 GGGGGTAAAATGGTATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTC
* * * *
8722786 GAGGGTAAAATGTTAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAGTTT
1 GGGGGTAAAATGGT-ATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTC
* * * * * * *
8722845 AGGGGTAAAATGGTAATTTTAGGTGAAACCGGGGTTTAAAATGGAATTTTTGAAAGTTT
1 GGGGGTAAAATGGT-ATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTC
* * * * *
8722904 AGGGGTAAAATGGTAATTTTGGTGAAAT-TAGGGTT-AAAATGGAATTTTAGAAGGTTC
1 GGGGGTAAAATGGTATTTTTGGTGAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTTC
*
8722961 -GGGTTAAAATGGTAATTTTTGG
1 GGGGGTAAAATGGT-ATTTTTGG
8722983 AAGTTTCGGG
Statistics
Matches: 272, Mismatches: 36, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
56 12 0.04
57 28 0.10
58 78 0.29
59 150 0.55
60 4 0.01
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.33
Consensus pattern (58 bp):
GGGGGTAAAATGGTATTTTTGGTGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTC
Found at i:8722792 original size:117 final size:115
Alignment explanation
Indices: 8722617--8722979 Score: 414
Period size: 117 Copynumber: 3.1 Consensus size: 115
8722607 CCGGGGGGGC
** * *
8722617 AAAATGGTAATTTTGGAAAAATCGGGGTTAAAAATGGAATTTTTG-AGGCTTCGGGGGTAAAATG
1 AAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTTGAAAG-TTCGAGGGTAAAATG
*
8722681 GTACTTTTTGGTGAAATCGAGGTTAAAAATAGAATTTTAGGAGGTTCGAGGGT
65 GTA-TTTTTGGTGAAAT-GAGGTTAAAAATGGAATTTTAGGAGGTTCGAGGGT
* * ** * *
8722734 AAAATGGTAATTTTGGTGAAATTGAGGTTAAAAAAAGAATTTTGGAAAGTTCGAGGGTAAAATGT
1 AAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTTGAAAGTTCGAGGGTAAAATGG
* *
8722799 TAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTT-GGAAAGTT-TAGGGGT
66 T-ATTTTTGGTGAAA-TGAGGTTAAAAATGGAATTTTAGG-AGGTTCGA-GGGT
* * *
8722851 AAAATGGTAATTTTAGGTGAAACCGGGGTTTAAAATGGAATTTTTGAAAGTT-TAGGGGTAAAAT
1 AAAATGGTAATTTT-GGTGAAATCGGGGTTAAAAATGGAATTTTTGAAAGTTCGA-GGGTAAAAT
* * * *
8722915 GGTAATTTTGGTGAAATTAGGGTT-AAAATGGAATTTTAGAAGGTTCG-GGTT
64 GGTATTTTTGGTGAAATGA-GGTTAAAAATGGAATTTTAGGAGGTTCGAGGGT
8722966 AAAATGGTAATTTT
1 AAAATGGTAATTTT
8722980 TGGAAGTTTC
Statistics
Matches: 208, Mismatches: 28, Indels: 22
0.81 0.11 0.09
Matches are distributed among these distances:
115 17 0.08
116 22 0.11
117 124 0.60
118 45 0.22
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (115 bp):
AAAATGGTAATTTTGGTGAAATCGGGGTTAAAAATGGAATTTTTGAAAGTTCGAGGGTAAAATGG
TATTTTTGGTGAAATGAGGTTAAAAATGGAATTTTAGGAGGTTCGAGGGT
Found at i:8722894 original size:176 final size:174
Alignment explanation
Indices: 8722612--8722982 Score: 444
Period size: 176 Copynumber: 2.1 Consensus size: 174
8722602 GATACCCGGG
* ** * * * * *
8722612 GGGGCAAAATGGTAA-TTTTGGAAAAATCGGGGTTAAAAATGGAATTTTTGAGGCTTCGGGGGTA
1 GGGGTAAAATGGTAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAGCTTCAGGGGTA
* * * * *
8722676 AAATGGTACTTTTTGGTGAAATCGAGGTTAAAAATAGAATTTTAGGAGGTTCGA-GGGTAAAATG
66 AAATGGTAATTTTAGGTGAAACCGAGGTTAAAAATAGAATTTTAGAAAGTT-GAGGGGTAAAATG
*
8722740 GTAATTTTGGTGAAATT-GAGGTTAAAAAAAGAATTTTGGAAAGTTC
130 GTAATTTTGGTGAAATTAG-GGTT-AAAAAAGAATTTTAGAAAGTTC
* *
8722786 GAGGGTAAAATGTTAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAAG-TTTAGGGG
1 G-GGGTAAAATGGTAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTTGG-AAGCTTCAGGGG
* * * * *
8722850 TAAAATGGTAATTTTAGGTGAAACCGGGGTTTAAAATGGAATTTTTGAAAGTTTAGGGGTAAAAT
64 TAAAATGGTAATTTTAGGTGAAACCGAGGTTAAAAATAGAATTTTAGAAAGTTGAGGGGTAAAAT
** *
8722915 GGTAATTTTGGTGAAATTAGGGTTAAAATGGAATTTTAGAAGGTTC
129 GGTAATTTTGGTGAAATTAGGGTTAAAAAAGAATTTTAGAAAGTTC
*
8722961 GGGTTAAAATGGTAATTTTTGG
1 GGGGTAAAATGGTAATTTTTGG
8722983 AAGTTTCGGG
Statistics
Matches: 166, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
174 20 0.12
175 32 0.19
176 111 0.67
177 3 0.02
ACGTcount: A:0.35, C:0.03, G:0.29, T:0.33
Consensus pattern (174 bp):
GGGGTAAAATGGTAATTTTTGGTGAAATTGAGGTTAAAAATGGAATTTTGGAAGCTTCAGGGGTA
AAATGGTAATTTTAGGTGAAACCGAGGTTAAAAATAGAATTTTAGAAAGTTGAGGGGTAAAATGG
TAATTTTGGTGAAATTAGGGTTAAAAAAGAATTTTAGAAAGTTC
Found at i:8722916 original size:28 final size:29
Alignment explanation
Indices: 8722823--8723007 Score: 129
Period size: 29 Copynumber: 6.4 Consensus size: 29
8722813 ATTGAGGTTA
*
8722823 AAAATGG-AATTTTGGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGAAAGTTTAGGGGT
**
8722851 AAAATGGTAATTTTAGGTGAAA---CCGGGGTTT
1 AAAATGGTAATTTT---TGAAAGTTTAGGGG--T
8722882 AAAATGG-AATTTTTGAAAGTTTAGGGGT
1 AAAATGGTAATTTTTGAAAGTTTAGGGGT
*
8722910 AAAATGGTAATTTTGGTGAAA--TTAGGGTT
1 AAAATGGTAATTTT--TGAAAGTTTAGGGGT
* * * *
8722939 AAAATGG-AATTTTAG-AAGGTTCGGGTT
1 AAAATGGTAATTTTTGAAAGTTTAGGGGT
* *
8722966 AAAATGGTAATTTTTGGAAGTTTCGGGGT
1 AAAATGGTAATTTTTGAAAGTTTAGGGGT
*
8722995 CAGAAT-GTAATTT
1 -AAAATGGTAATTT
8723008 CCTAAAATTT
Statistics
Matches: 128, Mismatches: 12, Indels: 33
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 19 0.15
28 28 0.22
29 47 0.37
30 14 0.11
31 13 0.10
32 4 0.03
ACGTcount: A:0.34, C:0.03, G:0.29, T:0.35
Consensus pattern (29 bp):
AAAATGGTAATTTTTGAAAGTTTAGGGGT
Found at i:8723302 original size:162 final size:161
Alignment explanation
Indices: 8723129--8723443 Score: 522
Period size: 162 Copynumber: 2.0 Consensus size: 161
8723119 GATTAAAATG
* * * *
8723129 TAAATCTTGAAAAATTCTTGGGCTAATTTCGTAATTAAGTAAAAGTTGATTTAGGGATTAAATTA
1 TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTA
* *
8723194 AAACAAATAAAAAATGTCAGGGACTAAATGCATCAATAAGCCAAAAAATGACACGTGGCAGCCCC
66 AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAG-CAAAAAAAGACACGTGGCAGCCCC
*
8723259 TGGTGCAGTCAAACAGTCAAAGGACTAATTTA
130 TGGTGCAATCAAACAGTCAAAGGACTAATTTA
*
8723291 TAAACCTTGAAAAATTATTGGGCCAATTTTGTAATTAAATAAAAGTTGATTTAGGGATTAAATTA
1 TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTA
* * *
8723356 AAATAAATTAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTGGCAGCCTCT
66 AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTGGCAGCCCCT
8723421 GGTGCAATCAAACAGTCAAAGGA
131 GGTGCAATCAAACAGTCAAAGGA
8723444 TTAAATTGAA
Statistics
Matches: 142, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
161 45 0.32
162 97 0.68
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (161 bp):
TAAACCTTGAAAAATTATTGGGCCAATTTCGTAATTAAATAAAAGTTGATTTAGGGATTAAATTA
AAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAGCAAAAAAAGACACGTGGCAGCCCCT
GGTGCAATCAAACAGTCAAAGGACTAATTTA
Found at i:8724242 original size:3 final size:3
Alignment explanation
Indices: 8724234--8724273 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
8724224 TTCTTTTTCG
*
8724234 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8724274 TAATATGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8724285 original size:17 final size:14
Alignment explanation
Indices: 8724238--8724274 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8724228 TTTTCGTTAT
*
8724238 TATTATTATTATTAT
1 TATTATT-TTATTAA
8724253 TATTATTTTATTAA
1 TATTATTTTATTAA
8724267 TATTATTT
1 TATTATTT
8724275 AATATGTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATTTTATTAA
Found at i:8724435 original size:10 final size:10
Alignment explanation
Indices: 8724422--8724468 Score: 76
Period size: 10 Copynumber: 4.5 Consensus size: 10
8724412 CTAAATAGAC
8724422 AGTAATATAT
1 AGTAATATAT
8724432 AGTAATATAT
1 AGTAATATAT
8724442 AGTAATATATAT
1 AGT-A-ATATAT
8724454 AGTAATATAT
1 AGTAATATAT
8724464 AGTAA
1 AGTAA
8724469 GTAGATATCT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
10 24 0.69
11 2 0.06
12 9 0.26
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (10 bp):
AGTAATATAT
Found at i:8724451 original size:12 final size:12
Alignment explanation
Indices: 8724426--8724464 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
8724416 ATAGACAGTA
8724426 ATATATAGT-A-
1 ATATATAGTAAT
8724436 ATATATAGTAAT
1 ATATATAGTAAT
8724448 ATATATAGTAAT
1 ATATATAGTAAT
8724460 ATATA
1 ATATA
8724465 GTAAGTAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.33
11 1 0.04
12 17 0.63
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (12 bp):
ATATATAGTAAT
Found at i:8724454 original size:22 final size:22
Alignment explanation
Indices: 8724426--8724468 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
8724416 ATAGACAGTA
8724426 ATATATAGTAATATATAGTAAT
1 ATATATAGTAATATATAGTAAT
8724448 ATATATAGTAATATATAGTAA
1 ATATATAGTAATATATAGTAA
8724469 GTAGATATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (22 bp):
ATATATAGTAATATATAGTAAT
Found at i:8725087 original size:6 final size:6
Alignment explanation
Indices: 8725076--8725142 Score: 77
Period size: 6 Copynumber: 11.7 Consensus size: 6
8725066 GAATTTATAA
* *
8725076 TAAATT TAAATT TAAA-T TAAATC CAAATT TAAA-T TAAATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT TAAATT
* *
8725122 TAAA-A TAAATT TAATTT TAAA
1 TAAATT TAAATT TAAATT TAAA
8725143 ACAAATTTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
5 14 0.28
6 36 0.72
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (6 bp):
TAAATT
Found at i:8725089 original size:17 final size:16
Alignment explanation
Indices: 8725067--8725153 Score: 93
Period size: 17 Copynumber: 5.1 Consensus size: 16
8725057 TTGGACTTTG
8725067 AATTTATAATAAATTTA
1 AATTTA-AATAAATTTA
**
8725084 AATTTAAATTAAATCCA
1 AATTTAAA-TAAATTTA
8725101 AATTTAAATTAAATTTA
1 AATTTAAA-TAAATTTA
8725118 AATTTAAAATAAATTTA
1 AATTT-AAATAAATTTA
* *
8725135 ATTTTAAAACAAATTTA
1 AATTT-AAATAAATTTA
8725152 AA
1 AA
8725154 ATGGTTTGAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
16 2 0.03
17 56 0.92
18 3 0.05
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (16 bp):
AATTTAAATAAATTTA
Found at i:8725095 original size:11 final size:11
Alignment explanation
Indices: 8725067--8725153 Score: 63
Period size: 11 Copynumber: 7.7 Consensus size: 11
8725057 TTGGACTTTG
8725067 AATTTATAA-TA
1 AATTTA-AATTA
8725078 AATTTAAATTTA
1 AATTTAAA-TTA
*
8725090 AA-TTAAATCCA
1 AATTTAAAT-TA
8725101 AATTTAAATTA
1 AATTTAAATTA
8725112 AATTTAAATTTA
1 AATTTAAA-TTA
*
8725124 AA-ATAAATTTA
1 AATTTAAA-TTA
* **
8725135 ATTTTAAAACA
1 AATTTAAATTA
8725146 AATTTAAA
1 AATTTAAA
8725154 ATGGTTTGAT
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
10 3 0.05
11 40 0.65
12 19 0.31
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:8725141 original size:34 final size:34
Alignment explanation
Indices: 8725067--8725153 Score: 111
Period size: 34 Copynumber: 2.6 Consensus size: 34
8725057 TTGGACTTTG
* *
8725067 AATTTATAATAAATTTAAATTTAAATTAAATCCA
1 AATTTAAAATAAATTTAAATTTAAAATAAATCCA
* **
8725101 AATTTAAATTAAATTTAAATTTAAAATAAATTTA
1 AATTTAAAATAAATTTAAATTTAAAATAAATCCA
* *
8725135 ATTTTAAAACAAATTTAAA
1 AATTTAAAATAAATTTAAA
8725154 ATGGTTTGAT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (34 bp):
AATTTAAAATAAATTTAAATTTAAAATAAATCCA
Found at i:8736207 original size:31 final size:32
Alignment explanation
Indices: 8736155--8736235 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
8736145 TTTTTTGTCC
* *
8736155 AATTTGTTACTCAAACTTGACA-TTTTCTCTT
1 AATTTGGTACTTAAACTTGACACTTTTCTCTT
* *
8736186 AATTTGGTACTTAAA-TCTGACACTTTTTTTTT
1 AATTTGGTACTTAAACT-TGACACTTTTCTCTT
*
8736218 AAGTTGGTACTTAAACTT
1 AATTTGGTACTTAAACTT
8736236 TTTGAGGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
30 1 0.02
31 18 0.43
32 22 0.52
33 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.48
Consensus pattern (32 bp):
AATTTGGTACTTAAACTTGACACTTTTCTCTT
Found at i:8744627 original size:11 final size:11
Alignment explanation
Indices: 8744611--8744641 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
8744601 TTTATAAAGG
8744611 ATTTCTCAAAA
1 ATTTCTCAAAA
8744622 ATTTCTCAAAA
1 ATTTCTCAAAA
8744633 ATTTCTCAA
1 ATTTCTCAA
8744642 CCGCTTTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (11 bp):
ATTTCTCAAAA
Found at i:8751360 original size:6 final size:5
Alignment explanation
Indices: 8751317--8751361 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
8751307 TTCGTCAAGA
* * *
8751317 TTTAT TTTAC TTTAT TTTAT TTCATT TTTAT TTTAT TTTAA TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTA
8751362 ACGTTTCTCT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:8753705 original size:25 final size:27
Alignment explanation
Indices: 8753663--8753712 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
8753653 ATTAAATTTT
8753663 AAAAGGATTTAAATTAAA-AAAACATA
1 AAAAGGATTTAAATTAAACAAAACATA
8753689 AAAAGGATTTAAA-TAAACAAAACA
1 AAAAGGATTTAAATTAAACAAAACA
8753713 GAATTAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.66, C:0.06, G:0.08, T:0.20
Consensus pattern (27 bp):
AAAAGGATTTAAATTAAACAAAACATA
Found at i:8765870 original size:18 final size:17
Alignment explanation
Indices: 8765843--8765878 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
8765833 AAGGTAGAGG
*
8765843 AAAACGTGCCATAAGGC
1 AAAACGTGCCACAAGGC
8765860 AAAAGCGTGCCACAAGGC
1 AAAA-CGTGCCACAAGGC
8765878 A
1 A
8765879 GAGGAAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.42, C:0.25, G:0.25, T:0.08
Consensus pattern (17 bp):
AAAACGTGCCACAAGGC
Found at i:8766818 original size:28 final size:29
Alignment explanation
Indices: 8766787--8766856 Score: 124
Period size: 29 Copynumber: 2.4 Consensus size: 29
8766777 TCGAAAAAGT
8766787 TTGATTCGGTTAA-TTTTTTAAAAAAAAA
1 TTGATTCGGTTAATTTTTTTAAAAAAAAA
*
8766815 TTGATTCGGTTAATTTTTTTAAAGAAAAA
1 TTGATTCGGTTAATTTTTTTAAAAAAAAA
8766844 TTGATTCGGTTAA
1 TTGATTCGGTTAA
8766857 CGATTGAGAG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
28 13 0.32
29 27 0.68
ACGTcount: A:0.37, C:0.04, G:0.14, T:0.44
Consensus pattern (29 bp):
TTGATTCGGTTAATTTTTTTAAAAAAAAA
Found at i:8769263 original size:22 final size:20
Alignment explanation
Indices: 8769235--8769274 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
8769225 TCATGATTAA
8769235 CTTAATTAATCACTTATTTAGC
1 CTTAATTAATC-C-TATTTAGC
8769257 CTTAATTAATCCTATTTA
1 CTTAATTAATCCTATTTA
8769275 TAATCAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 11 0.61
ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47
Consensus pattern (20 bp):
CTTAATTAATCCTATTTAGC
Found at i:8771630 original size:30 final size:31
Alignment explanation
Indices: 8771587--8771806 Score: 160
Period size: 30 Copynumber: 7.5 Consensus size: 31
8771577 GTTCGAGGGT
* *
8771587 AAAATGATAATTTTTGGTAAAATAGGGGTTA
1 AAAATGGTAATTTTTGGTAAAATCGGGGTTA
* * * *
8771618 AAAATGGT-A-TTTTAG-AAAGTTTGGGGGT-
1 AAAATGGTAATTTTTGGTAAA-ATCGGGGTTA
*
8771646 AAAATGGTAATTTTTAGTAAAATCGGGGTTA
1 AAAATGGTAATTTTTGGTAAAATCGGGGTTA
** *
8771677 AAAATGGT-A-TTTTGG-AAGTTCGGGGGT-
1 AAAATGGTAATTTTTGGTAAAATCGGGGTTA
*
8771704 AAAATGGTAATTTTTGGTGAAATCGGGGTTA
1 AAAATGGTAATTTTTGGTAAAATCGGGGTTA
* * * *
8771735 AAAATGGT-A-TTTTAG-AAAGTTTGGGGGT-
1 AAAATGGTAATTTTTGGTAAA-ATCGGGGTTA
* * *
8771763 AAAATGGTAATTTTTTGTGAAATCGAGGTTA
1 AAAATGGTAATTTTTGGTAAAATCGGGGTTA
*
8771794 AAAATAG-AATTTT
1 AAAATGGTAATTTT
8771807 GGAAAGTTTG
Statistics
Matches: 147, Mismatches: 28, Indels: 29
0.72 0.14 0.14
Matches are distributed among these distances:
27 8 0.05
28 31 0.21
29 35 0.24
30 39 0.27
31 34 0.23
ACGTcount: A:0.35, C:0.02, G:0.27, T:0.36
Consensus pattern (31 bp):
AAAATGGTAATTTTTGGTAAAATCGGGGTTA
Found at i:8771630 original size:59 final size:59
Alignment explanation
Indices: 8771553--8771953 Score: 479
Period size: 59 Copynumber: 6.8 Consensus size: 59
8771543 GGTGAAGTCA
* * * * * * *
8771553 GGTTAAAAAATAGAATTTTTGAGAGTTCGAGGGTAAAATGATAATTTTTGGTAAAATAGG
1 GGTT-AAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAAAATCGG
* *
8771613 GGTTAAAAATGGTATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTAGTAAAATCGG
1 GGTTAAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAAAATCGG
* * * *
8771672 GGTTAAAAATGGTATTTT-GGAAGTTCGGGGGTAAAATGGTAATTTTTGGTGAAATCGG
1 GGTTAAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAAAATCGG
* * * *
8771730 GGTTAAAAATGGTATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTTGTGAAATCGA
1 GGTTAAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAAAATCGG
* * * ** **
8771789 GGTTAAAAATAGAATTTTGGAAAGTTTGGGGGTAAAATGGTAATCTTTGG-AAGTTTTAG
1 GGTTAAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAA-AATCGG
** *
8771848 GGTTAAAAATGGAATTTTA-AAAGGTTTGGGGGTAAAATGGTAATTTTTGG-AAGTTTGGG
1 GGTTAAAAATGGAATTTTAGAAA-GTTTGGGGGTAAAATGGTAATTTTTGGTAA-AATCGG
8771907 GGTTAAAAATGGAATTTTA-AAAGGTTTGGGGGTAAAATGGTAATTTT
1 GGTTAAAAATGGAATTTTAGAAA-GTTTGGGGGTAAAATGGTAATTTT
8771954 GGAAGTTTTA
Statistics
Matches: 305, Mismatches: 33, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
58 58 0.19
59 243 0.80
60 4 0.01
ACGTcount: A:0.34, C:0.01, G:0.29, T:0.35
Consensus pattern (59 bp):
GGTTAAAAATGGAATTTTAGAAAGTTTGGGGGTAAAATGGTAATTTTTGGTAAAATCGG
Done.