Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 39 of 163
Found at i:10206482 original size:59 final size:57
Alignment explanation
Indices: 10206401--10206513 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 57
10206391 TGTGTGGCAC
*
10206401 CCATTTCAATCATGTAATTTAGAAG-AATCAATTTTTGAAGTTTCTAGTATGTGTGTTAT
1 CCATTTCAATCAAGTAATTTAGAAGAAAT-AATTTTTGAAGTTTCTA--ATGTGTGTTAT
10206460 CCATTTCAATCAAGTAATTTAGAAGAAAATAATTTTTGAAGTTTCTAATGTGTG
1 CCATTTCAATCAAGTAATTTAGAAG-AAATAATTTTTGAAGTTTCTAATGTGTG
10206514 GGTTTTAGCA
Statistics
Matches: 51, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
58 7 0.14
59 24 0.47
60 17 0.33
61 3 0.06
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.42
Consensus pattern (57 bp):
CCATTTCAATCAAGTAATTTAGAAGAAATAATTTTTGAAGTTTCTAATGTGTGTTAT
Found at i:10207969 original size:55 final size:54
Alignment explanation
Indices: 10207895--10208025 Score: 145
Period size: 55 Copynumber: 2.4 Consensus size: 54
10207885 ATTTGGATTG
* * * * *
10207895 AATCGATTGTTATGCTGGAATATTGCTTCATTTGAATCAATTGTTTTTATGTTTA
1 AATCAATTGTCATGTTGGAATATTGCTACATTTGAATCAATTG-TTATATGTTTA
* ** *
10207950 AATCAATTGTCATGTTGGAATATTGCTACTTTTGAATTGATTGTTATATTTTTA
1 AATCAATTGTCATGTTGGAATATTGCTACATTTGAATCAATTGTTATATGTTTA
* * *
10208004 AATCAATTATCATATTGAAATA
1 AATCAATTGTCATGTTGGAATA
10208026 CTTTTATGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 28 0.44
55 36 0.56
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (54 bp):
AATCAATTGTCATGTTGGAATATTGCTACATTTGAATCAATTGTTATATGTTTA
Found at i:10210182 original size:30 final size:30
Alignment explanation
Indices: 10210108--10210309 Score: 212
Period size: 30 Copynumber: 6.7 Consensus size: 30
10210098 GTAAGTCCTT
* *
10210108 AAACTATCCAAAAATTATA-TTTTGACCCCC
1 AAACT-TCCAAAAATTACATTTTTGACCCTC
* * *
10210138 AAGCTTCTCCAAAATTACATTTTTGACCCTA
1 AAACTTC-CAAAAATTACATTTTTGACCCTC
* *
10210169 AAACTTCTAAAAATTACA-TTTTCACCCTC
1 AAACTTCCAAAAATTACATTTTTGACCCTC
* * **
10210198 AAACTTCCAAAAATTCCATTTTTAACCCGA
1 AAACTTCCAAAAATTACATTTTTGACCCTC
10210228 AAACTTCCAAAAATTACATTTTT-ACCCTC
1 AAACTTCCAAAAATTACATTTTTGACCCTC
* * * * *
10210257 AAACTTCCAAAAACTCCAATTCTGACCCTG
1 AAACTTCCAAAAATTACATTTTTGACCCTC
10210287 AAACTTCCAAAAATTATCATTTT
1 AAACTTCCAAAAATTA-CATTTT
10210310 ACCCTCGGAT
Statistics
Matches: 140, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
29 50 0.36
30 71 0.51
31 19 0.14
ACGTcount: A:0.38, C:0.27, G:0.03, T:0.32
Consensus pattern (30 bp):
AAACTTCCAAAAATTACATTTTTGACCCTC
Found at i:10210220 original size:59 final size:58
Alignment explanation
Indices: 10210108--10210374 Score: 261
Period size: 59 Copynumber: 4.5 Consensus size: 58
10210098 GTAAGTCCTT
* * * * *
10210108 AAACTATCCAAAAATTATATTTTGACCCCCAAGCTTCTCCAAAATTACATTTTTGACCCTA
1 AAACT-TCCAAAAATTACATTTT-ACCCTCAAACTTC-CAAAAATTCCATTTTTGACCCTA
* * *
10210169 AAACTTCTAAAAATTACATTTTCACCCTCAAACTTCCAAAAATTCCATTTTTAACCCGA
1 AAACTTCCAAAAATTACATTTT-ACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTA
* * * *
10210228 AAACTTCCAAAAATTACATTTTTACCCTCAAACTTCCAAAAACTCCAATTCTGACCCTG
1 AAACTTCCAAAAATTACA-TTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTA
** *
10210287 AAACTTCCAAAAATTATCATTTTACCCTCGGA-TGTCCAAAAAACTT-CATTTTTGACCC-G
1 AAACTTCCAAAAATTA-CATTTTACCCTCAAACT-TCC-AAAAA-TTCCATTTTTGACCCTA
** *
10210346 AAACTTTTAGAAATTACCATTTTACCCTC
1 AAACTTCCAAAAATTA-CATTTTACCCTC
10210375 GAGTGTCCAA
Statistics
Matches: 176, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
58 1 0.01
59 122 0.69
60 47 0.27
61 6 0.03
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.32
Consensus pattern (58 bp):
AAACTTCCAAAAATTACATTTTACCCTCAAACTTCCAAAAATTCCATTTTTGACCCTA
Found at i:10210389 original size:29 final size:30
Alignment explanation
Indices: 10210356--10210445 Score: 80
Period size: 29 Copynumber: 3.1 Consensus size: 30
10210346 AAACTTTTAG
*
10210356 AAATTACCATTTTACCCTCGAGTGTCC-AA
1 AAATTACCATTTTACCCTCGAATGTCCTAA
* * * * *
10210385 GAATT-CCGTTTTTTATCC-CGATTTTCCTAA
1 AAATTACC--ATTTTACCCTCGAATGTCCTAA
10210415 AAATTACCATTTTACCCTCGAATGT-CTAA
1 AAATTACCATTTTACCCTCGAATGTCCTAA
10210444 AA
1 AA
10210446 TGTCATTTTA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
28 2 0.04
29 24 0.52
30 18 0.39
31 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (30 bp):
AAATTACCATTTTACCCTCGAATGTCCTAA
Found at i:10210398 original size:59 final size:59
Alignment explanation
Indices: 10210155--10210445 Score: 183
Period size: 59 Copynumber: 4.9 Consensus size: 59
10210145 TCCAAAATTA
* * * *
10210155 CATTTTTGACCCTAAAACTTCTAAAAATTA-CATTTTCACCCTCAAACT-TCC-AAAAA-TT
1 CATTTTTGACCC-GAAACTTTTAAAAATTACCATTTT-ACCCTC-GAGTGTCCAAAAAACTT
* ** * * *
10210213 CCATTTTTAACCCGAAAACTTCCAAAAATTA-CATTTTTACCCTCAAACT-TCC-AAAAACTC
1 -CATTTTTGACCCG-AAACTTTTAAAAATTACCA-TTTTACCCTC-GAGTGTCCAAAAAACTT
* * ** *
10210273 CAATTCTGACCCTGAAACTTCCAAAAATTATCATTTTACCCTCG-GATGTCCAAAAAACTT
1 CATTTTTGACCC-GAAACTTTTAAAAATTACCATTTTACCCTCGAG-TGTCCAAAAAACTT
* *
10210333 CATTTTTGACCCGAAACTTTTAGAAATTACCATTTTACCCTCGAGTGTCC-AAGAA-TT
1 CATTTTTGACCCGAAACTTTTAAAAATTACCATTTTACCCTCGAGTGTCCAAAAAACTT
* * * * *
10210390 CCGTTTTTTATCCCG--ATTTTCCTAAAAATTACCATTTTACCCTCGAATGTCTAAAA
1 -CATTTTTGA-CCCGAAACTTT--TAAAAATTACCATTTTACCCTCGAGTGTCCAAAA
10210446 TGTCATTTTA
Statistics
Matches: 194, Mismatches: 24, Indels: 27
0.79 0.10 0.11
Matches are distributed among these distances:
57 6 0.03
58 12 0.06
59 148 0.76
60 28 0.14
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (59 bp):
CATTTTTGACCCGAAACTTTTAAAAATTACCATTTTACCCTCGAGTGTCCAAAAAACTT
Found at i:10212490 original size:55 final size:55
Alignment explanation
Indices: 10212387--10212518 Score: 174
Period size: 55 Copynumber: 2.4 Consensus size: 55
10212377 GTCATAAAAG
* * * * *
10212387 TATTTCAACATGACAATTGATTTAAACATATAAACAATCGATTCAAAAGAAGCAA
1 TATTTCAACATGACAATCGATTTAAACAAAAAAACAATCGATTAAAAAGAAGAAA
* * *
10212442 TATTCCAACATGACAATCGATTTAAACAAAAAAATAATCTATTAAAAAGAAGAAA
1 TATTTCAACATGACAATCGATTTAAACAAAAAAACAATCGATTAAAAAGAAGAAA
* *
10212497 TATTTCAGCATAACAATCGATT
1 TATTTCAACATGACAATCGATT
10212519 CAATCCAAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.50, C:0.14, G:0.08, T:0.27
Consensus pattern (55 bp):
TATTTCAACATGACAATCGATTTAAACAAAAAAACAATCGATTAAAAAGAAGAAA
Found at i:10213267 original size:20 final size:19
Alignment explanation
Indices: 10213229--10213271 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
10213219 AATATTTATT
*
10213229 TAATATTTTAATTAAAATAA
1 TAATATTTTAATAAAAAT-A
10213249 TAATATTTT-ATAAATAATA
1 TAATATTTTAATAAA-AATA
10213268 TAAT
1 TAAT
10213272 TATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATATTTTAATAAAAATA
Found at i:10213820 original size:26 final size:26
Alignment explanation
Indices: 10213757--10213907 Score: 91
Period size: 26 Copynumber: 5.7 Consensus size: 26
10213747 TAAATGGCAT
*
10213757 AAAA-AATAAATAAATAAAATACATA
1 AAAACAATAAATAAATAAAATAAATA
*
10213782 AAAACAATAAATAAATAAGATTAAATA
1 AAAACAATAAATAAATAA-AATAAATA
* * *
10213809 AAAGCAA-GAATACAAAAAACATAAA-A
1 AAAACAATAAATA-AATAAA-ATAAATA
* *
10213835 AATGAATAACAAATAAAT-AAATAAATA
1 AA--AACAATAAATAAATAAAATAAATA
* *
10213862 AAAATTAACT-ACTAAATAAAATAATATA
1 AAAA-CAA-TAAATAAATAAAATAA-ATA
10213890 AAAA-ATATAAA-AAATAAA
1 AAAACA-ATAAATAAATAAA
10213908 TGGGACCAAA
Statistics
Matches: 99, Mismatches: 13, Indels: 27
0.71 0.09 0.19
Matches are distributed among these distances:
25 6 0.06
26 44 0.44
27 33 0.33
28 12 0.12
29 4 0.04
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.20
Consensus pattern (26 bp):
AAAACAATAAATAAATAAAATAAATA
Found at i:10213908 original size:30 final size:28
Alignment explanation
Indices: 10213760--10213908 Score: 85
Period size: 29 Copynumber: 5.1 Consensus size: 28
10213750 ATGGCATAAA
* *
10213760 AAATAAATAAATAAAATACATAA-AAA-
1 AAATAAATAAATAAAAAATATAACAAAT
* *
10213786 CAATAAATAAATAAGATTAAATAAAAGCAAGAAT
1 AAATAAATAAATAA-A--AAATATAA-C-A-AAT
*
10213820 ACAA-AAA-ACATAAAAAATGAATAACAAAT
1 A-AATAAATAAATAAAAAAT--ATAACAAAT
* *
10213849 AAATAAATAAAT-AAAAAT-TAACTACT
1 AAATAAATAAATAAAAAATATAACAAAT
*
10213875 AAATAAAATAATATAAAAAATATAAAAAAT
1 AAAT-AAATAA-ATAAAAAATATAACAAAT
10213905 AAAT
1 AAAT
10213909 GGGACCAAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
26 23 0.25
27 7 0.08
28 4 0.04
29 24 0.26
30 17 0.18
31 1 0.01
32 5 0.05
33 7 0.08
34 3 0.03
35 2 0.02
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (28 bp):
AAATAAATAAATAAAAAATATAACAAAT
Found at i:10213926 original size:4 final size:4
Alignment explanation
Indices: 10213755--10213908 Score: 61
Period size: 4 Copynumber: 37.5 Consensus size: 4
10213745 TATAAATGGC
* *
10213755 ATAA A-AA ATAA ATAA ATAAA ATAC ATAA AAACA ATAA ATAA ATAA GATTAA
1 ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATA-A ATAA ATAA ATAA -A-TAA
* * * * *
10213806 ATAA A-AGCA AGAA TACAA AAAA CATAA A-AA ATGA AT-A ACAA ATAA
1 ATAA ATA--A ATAA -ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA
* * *
10213851 ATAA ATAA ATAA A-AA TTAA CT-A CTAA ATAAA ATAA TATAA A-AA ATATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA -ATAA ATAA ATA-A
*
10213899 AAAA ATAA AT
1 ATAA ATAA AT
10213909 GGGACCAAAT
Statistics
Matches: 117, Mismatches: 15, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
3 17 0.15
4 68 0.58
5 28 0.24
6 4 0.03
ACGTcount: A:0.71, C:0.05, G:0.03, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:10214046 original size:5 final size:5
Alignment explanation
Indices: 10214030--10214074 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
10214020 TGCAAATTAG
* *
10214030 AAATA GAAATA AAATA AAATA AAACTA AATTC AAATA AAATA AAA
1 AAATA -AAATA AAATA AAATA AAA-TA AAATA AAATA AAATA AAA
10214075 ATTATAAGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:10214058 original size:16 final size:15
Alignment explanation
Indices: 10214030--10214074 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
10214020 TGCAAATTAG
10214030 AAATAGAAATAAAATA
1 AAATA-AAATAAAATA
* *
10214046 AAATAAAACTAAATTC
1 AAATAAAA-TAAAATA
10214062 AAATAAAATAAAA
1 AAATAAAATAAAA
10214075 ATTATAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (15 bp):
AAATAAAATAAAATA
Found at i:10220835 original size:57 final size:57
Alignment explanation
Indices: 10220743--10220851 Score: 157
Period size: 57 Copynumber: 1.9 Consensus size: 57
10220733 ATAGCCATTG
* *
10220743 ATATTAAATCTTTATTTTCTCATATCTGAATCCAAAAGAAAATACCAAAAAAAACCC
1 ATATTAAATCTTTATTTTCTCATATCTAAACCCAAAAGAAAATACCAAAAAAAACCC
* * *
10220800 ATATTAAATTTTTATTTT-TCCATATCTAAACCCAAAAGAAAATGCTAAAAAA
1 ATATTAAATCTTTATTTTCT-CATATCTAAACCCAAAAGAAAATACCAAAAAA
10220852 GAATCTAGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
56 1 0.02
57 45 0.98
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.32
Consensus pattern (57 bp):
ATATTAAATCTTTATTTTCTCATATCTAAACCCAAAAGAAAATACCAAAAAAAACCC
Found at i:10223572 original size:4 final size:4
Alignment explanation
Indices: 10223563--10223726 Score: 67
Period size: 4 Copynumber: 40.0 Consensus size: 4
10223553 CATTAAAAAC
* *
10223563 AAAT AAAT AAAAT ACAT AAA- AAAA ACAAT AAAT AAAT AAGATT AAAT
1 AAAT AAAT -AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AA-A-T AAAT
* * * * *
10223610 AAAGG CAAG AATAT AAAT AACAT -AA- AAAT GAAT -AAC AAAT AAAT AAAT
1 AAA-T AAAT AA-AT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* *
10223658 AAAT AAA- ACAA- AAAGT AAAT AAA- AAGT AAAT -ACT AAAT AAAAT AATAT
1 AAAT AAAT A-AAT AAA-T AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AA-AT
10223706 AAAT AATAT AAA- AAAGT AAAT
1 AAAT AA-AT AAAT AAA-T AAAT
10223727 GGGACCAAAT
Statistics
Matches: 125, Mismatches: 14, Indels: 42
0.69 0.08 0.23
Matches are distributed among these distances:
3 18 0.14
4 70 0.56
5 34 0.27
6 3 0.02
ACGTcount: A:0.70, C:0.04, G:0.05, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:10223581 original size:9 final size:9
Alignment explanation
Indices: 10223563--10223726 Score: 56
Period size: 9 Copynumber: 17.9 Consensus size: 9
10223553 CATTAAAAAC
10223563 AAATAAATA
1 AAATAAATA
*
10223572 AAATACATA
1 AAATAAATA
10223581 AAA-AAA-A
1 AAATAAATA
*
10223588 CAATAAAT-
1 AAATAAATA
*
10223596 AAATAAGATT
1 AAATAA-ATA
**
10223606 AAATAAAGG
1 AAATAAATA
* *
10223615 CAA-GAATA
1 AAATAAATA
10223623 TAAATAACATAA
1 -AAATAA-AT-A
*
10223635 AAATGAATAA
1 AAATAAAT-A
10223645 CAAATAAAT-
1 -AAATAAATA
10223654 AAATAAATA
1 AAATAAATA
*
10223663 AAA-CAA-A
1 AAATAAATA
*
10223670 AAGTAAATAA
1 AAATAAAT-A
10223680 AAAGTAAATA
1 AAA-TAAATA
10223690 CTAAATAAAATA
1 --AAAT-AAATA
*
10223702 ATATAAATA
1 AAATAAATA
*
10223711 ATATAAA-A
1 AAATAAATA
*
10223719 AAGTAAAT
1 AAATAAAT
10223727 GGGACCAAAT
Statistics
Matches: 116, Mismatches: 21, Indels: 36
0.67 0.12 0.21
Matches are distributed among these distances:
7 6 0.05
8 30 0.26
9 33 0.28
10 18 0.16
11 20 0.17
12 9 0.08
ACGTcount: A:0.70, C:0.04, G:0.05, T:0.21
Consensus pattern (9 bp):
AAATAAATA
Found at i:10223623 original size:77 final size:78
Alignment explanation
Indices: 10223501--10223679 Score: 183
Period size: 78 Copynumber: 2.3 Consensus size: 78
10223491 TAATGGCATA
* * **
10223501 AAATATAAAAAAATAAAAA-T-AA-AA-ATTGAATAAAAGGCAAAAATATAAATGGCATTAAAAA
1 AAATA-AAAAAAACAAAAAGTAAATAAGATTAAAT-AAAGGCAAAAATATAAATAACA-TAAAAA
*
10223562 CAAATAA-ATA-AAAT
63 CAAATAACAAATAAAT
* * **
10223576 ACATAAAAAAAACAATAAA-TAAATAAGATTAAATAAAGGCAAGAATATAAATAACATAAAAATG
1 AAATAAAAAAAACAA-AAAGTAAATAAGATTAAATAAAGGCAAAAATATAAATAACATAAAAACA
10223640 AATAACAAATAAAT
65 AATAACAAATAAAT
*
10223654 AAATAAATAAAACAAAAAGTAAATAA
1 AAATAAAAAAAACAAAAAGTAAATAA
10223680 AAAGTAAATA
Statistics
Matches: 86, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
74 9 0.10
75 8 0.09
76 13 0.15
77 26 0.30
78 30 0.35
ACGTcount: A:0.70, C:0.05, G:0.06, T:0.19
Consensus pattern (78 bp):
AAATAAAAAAAACAAAAAGTAAATAAGATTAAATAAAGGCAAAAATATAAATAACATAAAAACAA
ATAACAAATAAAT
Found at i:10223645 original size:15 final size:15
Alignment explanation
Indices: 10223622--10223689 Score: 61
Period size: 15 Copynumber: 4.5 Consensus size: 15
10223612 AGGCAAGAAT
10223622 ATAAATAACATAAAA
1 ATAAATAACATAAAA
*
10223637 ATGAATAACA-AATAA
1 ATAAATAACATAA-AA
10223652 ATAAATAA-ATAAAA
1 ATAAATAACATAAAA
*
10223666 CAAAAAGTAA-ATAAAA
1 -ATAAA-TAACATAAAA
10223682 AGTAAATA
1 A-TAAATA
10223690 CTAAATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
14 5 0.11
15 27 0.61
16 12 0.27
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (15 bp):
ATAAATAACATAAAA
Found at i:10223649 original size:11 final size:10
Alignment explanation
Indices: 10223619--10223711 Score: 53
Period size: 11 Copynumber: 8.5 Consensus size: 10
10223609 TAAAGGCAAG
*
10223619 AATATAAATA
1 AATAAAAATA
*
10223629 ACATAAAAATG
1 A-ATAAAAATA
10223640 AATAACAAATA
1 AATAA-AAATA
10223651 AATAAATAAATAA
1 AAT-AA-AAAT-A
*
10223664 AACAAAAAGTA
1 AATAAAAA-TA
10223675 AATAAAAAGTA
1 AATAAAAA-TA
*
10223686 AATACTAAATA
1 AATA-AAAATA
*
10223697 AA-ATAATATA
1 AATA-AAAATA
10223707 AATAA
1 AATAA
10223712 TATAAAAAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
10 13 0.20
11 38 0.58
12 12 0.18
13 3 0.05
ACGTcount: A:0.71, C:0.04, G:0.03, T:0.22
Consensus pattern (10 bp):
AATAAAAATA
Found at i:10223663 original size:34 final size:34
Alignment explanation
Indices: 10223622--10223726 Score: 97
Period size: 34 Copynumber: 3.0 Consensus size: 34
10223612 AGGCAAGAAT
* *
10223622 ATAAATAACATAAAAA-TGAATAACAAA-TAAATAA
1 ATAAATAAAATAAAAAGTAAATAA-AAAGTAAAT-A
*
10223656 ATAAATAAAACAAAAAGTAAATAAAAAGTAAATA
1 ATAAATAAAATAAAAAGTAAATAAAAAGTAAATA
* *
10223690 CTAAATAAAATAATATAAATAATATAAAAAAGTAAAT
1 ATAAATAAAATAA-A-AAGTAA-AT-AAAAAGTAAAT
10223727 GGGACCAAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
34 29 0.49
35 12 0.20
36 5 0.08
37 2 0.03
38 11 0.19
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (34 bp):
ATAAATAAAATAAAAAGTAAATAAAAAGTAAATA
Found at i:10229152 original size:23 final size:24
Alignment explanation
Indices: 10229121--10229170 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
10229111 TTGTCAACTC
*
10229121 CAAACCCTAAAACTAA-AACCAAG
1 CAAACCCTAAAACAAAGAACCAAG
* * *
10229144 CAAAGCCTATAACAAAGAATCAAG
1 CAAACCCTAAAACAAAGAACCAAG
10229168 CAA
1 CAA
10229171 CCAAAATAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.56, C:0.26, G:0.08, T:0.10
Consensus pattern (24 bp):
CAAACCCTAAAACAAAGAACCAAG
Found at i:10230010 original size:16 final size:15
Alignment explanation
Indices: 10229989--10230021 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
10229979 TTTAAAATCA
10229989 TCATCATCACCATTCC
1 TCATCATCACCA-TCC
10230005 TCATCATCACCATCC
1 TCATCATCACCATCC
10230020 TC
1 TC
10230022 GTTGTTCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.45, G:0.00, T:0.30
Consensus pattern (15 bp):
TCATCATCACCATCC
Found at i:10232505 original size:4 final size:4
Alignment explanation
Indices: 10232491--10232595 Score: 70
Period size: 4 Copynumber: 25.2 Consensus size: 4
10232481 TATAAATGGC
* * **
10232491 ATAA A-AA ATAA ATAAA ATAC ATAA AAAA ATAA ATAA GATTAA ATAA AGGCA
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA -A-TAA ATAA A-TAA
* * * *
10232542 AGAA TATAA ATAA CATAA AAAA ATGA AT-A ACAA ATAA ATAA ATAA ATAA
1 ATAA -ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
10232591 ATAA A
1 ATAA A
10232596 AATACTAAGT
Statistics
Matches: 80, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
3 5 0.06
4 57 0.71
5 15 0.19
6 3 0.04
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (4 bp):
ATAA
Found at i:10232550 original size:65 final size:68
Alignment explanation
Indices: 10232470--10232594 Score: 175
Period size: 65 Copynumber: 1.9 Consensus size: 68
10232460 AAATTGAACA
** *
10232470 AAAGGCAAAAATATAAATGGCAT-AAAAAATAAAT-A-AAATACATAAAAAAATAAATAAGATTA
1 AAAGGCAAAAATATAAATAACATAAAAAAATAAATAACAAATAAATAAAAAAATAAATAAGATTA
10232532 AAT
66 AAT
* * *
10232535 AAAGGCAAGAATATAAATAACATAAAAAAATGAATAACAAATAAATAAATAAATAAATAA
1 AAAGGCAAAAATATAAATAACATAAAAAAATAAATAACAAATAAATAAAAAAATAAATAA
10232595 AAATACTAAG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
65 20 0.39
66 10 0.20
67 1 0.02
68 20 0.39
ACGTcount: A:0.69, C:0.05, G:0.07, T:0.19
Consensus pattern (68 bp):
AAAGGCAAAAATATAAATAACATAAAAAAATAAATAACAAATAAATAAAAAAATAAATAAGATTA
AAT
Found at i:10232746 original size:30 final size:29
Alignment explanation
Indices: 10232699--10232766 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
10232689 GAGGCAAAAT
*
10232699 TAAATAAAGGACTAAATTGAAAATACAAA
1 TAAATAAAGGACTAAATTAAAAATACAAA
*
10232728 TAAATTAAAGGTAC-AAATTAAAAATAGAAA
1 TAAA-TAAAGG-ACTAAATTAAAAATACAAA
10232758 TAAAATAAA
1 T-AAATAAA
10232767 ATAAAACTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 4 0.12
30 25 0.74
31 5 0.15
ACGTcount: A:0.65, C:0.04, G:0.09, T:0.22
Consensus pattern (29 bp):
TAAATAAAGGACTAAATTAAAAATACAAA
Found at i:10232765 original size:5 final size:5
Alignment explanation
Indices: 10232748--10232793 Score: 65
Period size: 5 Copynumber: 8.8 Consensus size: 5
10232738 GTACAAATTA
*
10232748 AAAAT AGAAAT AAAAT AAAAT AAAACT AAATT AAAAT AAAAT AAAA
1 AAAAT A-AAAT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAA
10232794 ATTACAGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
5 28 0.76
6 9 0.24
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:10232769 original size:16 final size:15
Alignment explanation
Indices: 10232748--10232793 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 15
10232738 GTACAAATTA
10232748 AAAATAGAAATAAAAT
1 AAAATA-AAATAAAAT
*
10232764 AAAATAAAACTAAATT
1 AAAATAAAA-TAAAAT
10232780 AAAATAAAATAAAA
1 AAAATAAAATAAAA
10232794 ATTACAGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (15 bp):
AAAATAAAATAAAAT
Found at i:10235203 original size:5 final size:5
Alignment explanation
Indices: 10235193--10235217 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10235183 ATCTATAAAT
10235193 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
10235218 CCTAACCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:10236455 original size:6 final size:6
Alignment explanation
Indices: 10236433--10236504 Score: 53
Period size: 6 Copynumber: 12.5 Consensus size: 6
10236423 GTTTAAGTTG
* *
10236433 ATTTAA ATTTAT TTTTAA ATTTAA ATTT-- ATCTT-A ATTTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA AT-TTAA ATTTAA ATTTAA
* * * *
10236479 ATTT-G CTTTAA ATTAAA ATTAAA ATT
1 ATTTAA ATTTAA ATTTAA ATTTAA ATT
10236505 GATATTAAAT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
4 2 0.04
5 7 0.13
6 44 0.83
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (6 bp):
ATTTAA
Found at i:10236494 original size:22 final size:23
Alignment explanation
Indices: 10236447--10236518 Score: 85
Period size: 22 Copynumber: 3.2 Consensus size: 23
10236437 AAATTTATTT
* *
10236447 TTAAATTTAAATTT-ATCTTAAT
1 TTAAATTTAAATTTGATATTAAA
*
10236469 TTAAATTTAAATTTGCT-TTAAA
1 TTAAATTTAAATTTGATATTAAA
* *
10236491 TTAAAATTAAAATTGATATTAAA
1 TTAAATTTAAATTTGATATTAAA
10236514 TTAAA
1 TTAAA
10236519 AAATCCAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
22 32 0.74
23 11 0.26
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (23 bp):
TTAAATTTAAATTTGATATTAAA
Found at i:10236993 original size:42 final size:42
Alignment explanation
Indices: 10236905--10237029 Score: 182
Period size: 42 Copynumber: 3.0 Consensus size: 42
10236895 CCAAGTATTT
*
10236905 TTAAACCCACATATAATTTTATTCTTC-AAAACACTCATAAA
1 TTAAACCCAAATATAATTTTATTCTTCAAAAACACTCATAAA
* * *
10236946 CTAAACCCAAATATAATTTCATTCTTCAAAAACACTCATTAA
1 TTAAACCCAAATATAATTTTATTCTTCAAAAACACTCATAAA
*
10236988 TTAAACCCAAATATAATTTTATTCCT-AAATAACACTCATAAA
1 TTAAACCCAAATATAATTTTATTCTTCAAA-AACACTCATAAA
10237030 CAACTCCTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 27 0.36
42 47 0.64
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.33
Consensus pattern (42 bp):
TTAAACCCAAATATAATTTTATTCTTCAAAAACACTCATAAA
Found at i:10237593 original size:5 final size:5
Alignment explanation
Indices: 10237583--10237608 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10237573 GAATAAATAT
10237583 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
10237609 ATTCTATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:10242278 original size:29 final size:29
Alignment explanation
Indices: 10242192--10242402 Score: 203
Period size: 30 Copynumber: 7.1 Consensus size: 29
10242182 CCCTGTAAGT
**
10242192 CCCT-AAACTATCCAAAAATTGTATTTTAA
1 CCCTAAAACT-TCCAAAAATTACATTTTAA
* * * *
10242221 CCCTCAAACTTCTCCAAAATCACATTTTTGA
1 CCCTAAAACTTC-CAAAAATTACA-TTTTAA
10242252 CCCTAAAACTTCCAAAAATTACATTTTAA
1 CCCTAAAACTTCCAAAAATTACATTTTAA
**
10242281 CCCCCAAACTTCCAAAAATTACATTTTTAA
1 CCCTAAAACTTCCAAAAATTACA-TTTTAA
* *
10242311 CCCTAAAAC-TCCAAAAAATTCCATTTTTA
1 CCCTAAAACTTCC-AAAAATTACATTTTAA
* * *
10242340 CCCTTAAACTTCCAAAAATTATATTTTTGA
1 CCCTAAAACTTCCAAAAATTACA-TTTTAA
**
10242370 CCCTAAAACTTTTAAAAATTACCATTTT-A
1 CCCTAAAACTTCCAAAAATTA-CATTTTAA
10242399 CCCT
1 CCCT
10242403 CGAGTGTCCA
Statistics
Matches: 151, Mismatches: 23, Indels: 16
0.79 0.12 0.08
Matches are distributed among these distances:
29 61 0.40
30 73 0.48
31 17 0.11
ACGTcount: A:0.39, C:0.26, G:0.01, T:0.34
Consensus pattern (29 bp):
CCCTAAAACTTCCAAAAATTACATTTTAA
Found at i:10242328 original size:59 final size:58
Alignment explanation
Indices: 10242202--10242403 Score: 244
Period size: 59 Copynumber: 3.4 Consensus size: 58
10242192 CCCTAAACTA
** * *
10242202 TCCAAAAATTGTATTTTAACCCTCAAACTTCTCCAAAATCACATTTTTGACCCTAAAAC
1 TCCAAAAATTACATTTTAACCCTCAAACTTC-CAAAAATTACATTTTTGACCCTAAAAC
* *
10242261 TTCCAAAAATTACATTTTAACCCCCAAACTTCCAAAAATTACATTTTTAACCCTAAAAC
1 -TCCAAAAATTACATTTTAACCCTCAAACTTCCAAAAATTACATTTTTGACCCTAAAAC
* * * *
10242320 TCCAAAAAATTCCATTTTTACCCTTAAACTTCCAAAAATTATATTTTTGACCCTAAAAC
1 TCC-AAAAATTACATTTTAACCCTCAAACTTCCAAAAATTACATTTTTGACCCTAAAAC
**
10242379 TTTTAAAAATTACCATTTT-ACCCTC
1 -TCCAAAAATTA-CATTTTAACCCTC
10242404 GAGTGTCCAA
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
58 3 0.02
59 85 0.69
60 35 0.28
ACGTcount: A:0.39, C:0.26, G:0.01, T:0.34
Consensus pattern (58 bp):
TCCAAAAATTACATTTTAACCCTCAAACTTCCAAAAATTACATTTTTGACCCTAAAAC
Found at i:10242413 original size:59 final size:58
Alignment explanation
Indices: 10242192--10242461 Score: 219
Period size: 59 Copynumber: 4.6 Consensus size: 58
10242182 CCCTGTAAGT
** * * * *
10242192 CCCT-AAACTATCCAAAAATT-GTATTTTAACCCTCAAACTTCTCCAAAATCACATTTTTGA
1 CCCTAAAACT-TCCAAAAATTACCATTTT-ACCC-CCAACTTC-CAAAAATTATATTTTTGA
* *
10242252 CCCTAAAACTTCCAAAAATTA-CATTTTAACCCCCAAACTTCCAAAAATTACATTTTTAA
1 CCCTAAAACTTCCAAAAATTACCATTTT-ACCCCC-AACTTCCAAAAATTATATTTTTGA
**
10242311 CCCTAAAAC-TCCAAAAAATT-CCATTTTTACCCTTAAACTTCCAAAAATTATATTTTTGA
1 CCCTAAAACTTCC-AAAAATTACCA-TTTTACCC-CCAACTTCCAAAAATTATATTTTTGA
** * * * * *
10242370 CCCTAAAACTTTTAAAAATTACCATTTTACCCTCGAGTGTCCAAAAACTCTATTTTTGA
1 CCCTAAAACTTCCAAAAATTACCATTTTACCCCCAACT-TCCAAAAATTATATTTTTGA
* * **
10242429 CCC-GAAACTTTCAAAAATTACCAAATTACCCCC
1 CCCTAAAACTTCCAAAAATTACCATTTTACCCCC
10242462 GGGTGTCCAA
Statistics
Matches: 179, Mismatches: 21, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
58 31 0.17
59 105 0.59
60 38 0.21
61 5 0.03
ACGTcount: A:0.38, C:0.27, G:0.03, T:0.32
Consensus pattern (58 bp):
CCCTAAAACTTCCAAAAATTACCATTTTACCCCCAACTTCCAAAAATTATATTTTTGA
Found at i:10242468 original size:58 final size:59
Alignment explanation
Indices: 10242350--10242474 Score: 171
Period size: 58 Copynumber: 2.1 Consensus size: 59
10242340 CCCTTAAACT
* * ** *
10242350 TCCAAAAATTATATTTTTGACCCTAAAACTTTTAAAAATTACCATTTTACCCTCGAGTG
1 TCCAAAAACTATATTTTTGACCCTAAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
* * *
10242409 TCCAAAAACTCTATTTTTGACCC-GAAACTTTCAAAAATTACCAAATTACCCCCGGGTG
1 TCCAAAAACTATATTTTTGACCCTAAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
10242467 TCCAAAAA
1 TCCAAAAA
10242475 TTTCGTTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
58 37 0.64
59 21 0.36
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (59 bp):
TCCAAAAACTATATTTTTGACCCTAAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
Found at i:10242484 original size:58 final size:58
Alignment explanation
Indices: 10242350--10242509 Score: 164
Period size: 58 Copynumber: 2.7 Consensus size: 58
10242340 CCCTTAAACT
* * ** *
10242350 TCCAAAAATTAT-ATTTTTGACCCTAAAACTTTTAAAAATTACCATTTTACCCTCGAGTG
1 TCCAAAAATT-TCATTTTTGACCC-GAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
* *
10242409 TCCAAAAA-CTCTATTTTTGACCCGAAACTTTCAAAAATTACCAAATTACCCCCGGGTG
1 TCCAAAAATTTC-ATTTTTGACCCGAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
* **
10242467 TCCAAAAATTTCGTTTTTGATCCCG-ATTTTTCTAAAAATTACC
1 TCCAAAAATTTCATTTTTGA-CCCGAAACTTTC-AAAAATTACC
10242510 GTTTCACCCC
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
57 1 0.01
58 49 0.58
59 35 0.41
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.35
Consensus pattern (58 bp):
TCCAAAAATTTCATTTTTGACCCGAAACTTTCAAAAATTACCAAATTACCCCCGAGTG
Found at i:10242593 original size:28 final size:28
Alignment explanation
Indices: 10242557--10242618 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
10242547 CCAAATTTTC
**
10242557 CCAAAATTACCATTTTGTCCTCGAG-AGT
1 CCAAAATTACCATTTTACCCTCGAGTA-T
10242585 CCAAAATTACCATTTTACCCTCGAGTAT
1 CCAAAATTACCATTTTACCCTCGAGTAT
10242613 CCAAAA
1 CCAAAA
10242619 AGTCTCATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (28 bp):
CCAAAATTACCATTTTACCCTCGAGTAT
Found at i:10247697 original size:12 final size:12
Alignment explanation
Indices: 10247680--10247757 Score: 61
Period size: 12 Copynumber: 6.2 Consensus size: 12
10247670 TTCAATGAAT
10247680 AAAAGAAAAGAA
1 AAAAGAAAAGAA
10247692 AAAAGAAGAAG-A
1 AAAAGAA-AAGAA
*
10247704 AAGAGAAAAAGAA
1 AAAAG-AAAAGAA
*
10247717 AAAA-ATATAGAA
1 AAAAGA-AAAGAA
*
10247729 AACAAAAAAGAGAA
1 AA-AAGAAA-AGAA
10247743 AAAAGAAAAAGAA
1 AAAAG-AAAAGAA
10247756 AA
1 AA
10247758 TGAGAGGTCG
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
11 1 0.02
12 22 0.42
13 20 0.38
14 10 0.19
ACGTcount: A:0.79, C:0.01, G:0.17, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:10248843 original size:51 final size:51
Alignment explanation
Indices: 10248725--10248944 Score: 171
Period size: 51 Copynumber: 4.4 Consensus size: 51
10248715 AGTACCATAC
* * * * *
10248725 AAAAAGACAAAAGGGAAAGGTCTAAG-TCACAACGGTGGA-CCGTGTACCTT
1 AAAAAGACAAAAGGGAAAGATCTAAGATCGCAACGGCGGATCC-AGTACCGT
* * * * **
10248775 AGAAAATAC-GACGGGAAAGATCTAAGACCGCAATAGCGGATCCAGTACCGT
1 A-AAAAGACAAAAGGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCGT
* * * **
10248826 AAAAAGATAAAAGGGAAAGGTCTAAG-TCGTAACGGCGGATCGTGTACC-T
1 AAAAAGACAAAAGGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCGT
* * * * ** *
10248875 CAGAAGACACGACGAAAAAGATCTAAGATCGCAACGGCGGATCCAGTACTGT
1 AAAAAGACA-AAAGGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCGT
10248927 AAAAAGACAAAAGGGAAA
1 AAAAAGACAAAAGGGAAA
10248945 AGTCTTTATC
Statistics
Matches: 123, Mismatches: 40, Indels: 13
0.70 0.23 0.07
Matches are distributed among these distances:
49 7 0.06
50 48 0.39
51 58 0.47
52 10 0.08
ACGTcount: A:0.42, C:0.18, G:0.26, T:0.14
Consensus pattern (51 bp):
AAAAAGACAAAAGGGAAAGATCTAAGATCGCAACGGCGGATCCAGTACCGT
Found at i:10248900 original size:101 final size:101
Alignment explanation
Indices: 10248725--10248949 Score: 315
Period size: 101 Copynumber: 2.2 Consensus size: 101
10248715 AGTACCATAC
* * * **
10248725 AAAAAGACAAAAGGGAAAGGTCTAAGTCACAACGGTGGACCGTGTACCTTAGAAAATACGACGGG
1 AAAAAGACAAAAGGGAAAGGTCTAAGTCACAACGGCGGACCGTGTACCTCAGAAAACACGACGAA
*
10248790 AAAGATCTAAGACCGCAATAGCGGATCCAGTACCGT
66 AAAGATCTAAGACCGCAACAGCGGATCCAGTACCGT
* ** * *
10248826 AAAAAGATAAAAGGGAAAGGTCTAAGTCGTAACGGCGGATCGTGTACCTCAGAAGACACGACGAA
1 AAAAAGACAAAAGGGAAAGGTCTAAGTCACAACGGCGGACCGTGTACCTCAGAAAACACGACGAA
* * *
10248891 AAAGATCTAAGATCGCAACGGCGGATCCAGTACTGT
66 AAAGATCTAAGACCGCAACAGCGGATCCAGTACCGT
*
10248927 AAAAAGACAAAAGGGAAAAGTCT
1 AAAAAGACAAAAGGGAAAGGTCT
10248950 TTATCTCTCT
Statistics
Matches: 108, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 108 1.00
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (101 bp):
AAAAAGACAAAAGGGAAAGGTCTAAGTCACAACGGCGGACCGTGTACCTCAGAAAACACGACGAA
AAAGATCTAAGACCGCAACAGCGGATCCAGTACCGT
Found at i:10249719 original size:207 final size:206
Alignment explanation
Indices: 10249334--10250154 Score: 1261
Period size: 207 Copynumber: 4.0 Consensus size: 206
10249324 AAGTATACCG
* * *
10249334 ACCCATGCTCGATGTGAGCAAATCTTC-GAACCCCAGCTTCCTGATGAGATACTTAGAAGCAGGT
1 ACCCACGCTCGATATGAGCAAATCTTCGGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGT
*
10249398 CGAAGCAATAAAGTGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGA
66 CGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGA
* *
10249463 TGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATAAGATATTGAGAAGA
131 TGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGA
10249528 AGACCAAATCA
196 AGACCAAATCA
* * *
10249539 AGCCCACACTCGATATGAGCAAGTCTTCGGACCCCCAGCTTCCTGATGAGATACTGAGAAGCAGG
1 A-CCCACGCTCGATATGAGCAAATCTTCGGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGG
* * *
10249604 TCGAAGTAATAAAATGGTTAGCTTCCTGATGACATACTGAGAAGTGGACCAAATTCGTCTTCTTG
65 TCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTG
*
10249669 ATGAGATACAGAGAAGCGGATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAG
130 ATGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAG
10249734 AAGACCAAATCAA
195 AAGACCAAATC-A
* *
10249747 ACCCACGCTCAATATGAGCAAGTCTTCGG-ACCCTCAGCTTCCTGATGAGATACTGAGAAGCAGG
1 ACCCACGCTCGATATGAGCAAATCTTCGGAACCC-CAGCTTCCTGATGAGATACTGAGAAGCAGG
* * *
10249811 TTGAAGTAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGTACCAAATTCGTCTTCCTG
65 TCGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTG
* * * * *
10249876 ATGAGATACAAAGAAGCGGATTGAAACAAGTAAGGCGGTCATCTTCCTGATGAGATATTGAGAAG
130 ATGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAG
10249941 AAGACCAAATCGA
195 AAGACCAAATC-A
* ** * * *
10249954 ACCCACGCTCGATGTGAGCAAAT-TTTTGAACCTCAACTTCCTGATGAGATATTGAGAAGCAGGT
1 ACCCACGCTCGATATGAGCAAATCTTCGGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGT
* *
10250018 CAAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTTCTGA
66 CGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGA
** * * *
10250083 TGAGATACAGAGAAGCGAATTGAAACAAACGACGCGGTCATCTTCCTGATGAGACACCGAGAAGA
131 TGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGA
10250148 AGACCAA
196 AGACCAA
10250155 GTTAATGAAA
Statistics
Matches: 564, Mismatches: 47, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
205 1 0.00
206 180 0.32
207 381 0.68
208 2 0.00
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.23
Consensus pattern (206 bp):
ACCCACGCTCGATATGAGCAAATCTTCGGAACCCCAGCTTCCTGATGAGATACTGAGAAGCAGGT
CGAAGCAATAAAATGGTTAGCTTCCTGATGAGATACTGAGAAGTGGACCAAATTCGTCTTCCTGA
TGAGATACAGAGAAGCGAATTGAAACAAGTGATGCGGTCATCTTCCTGATGAGATACTGAGAAGA
AGACCAAATCA
Found at i:10250541 original size:6 final size:6
Alignment explanation
Indices: 10250519--10250600 Score: 69
Period size: 6 Copynumber: 13.5 Consensus size: 6
10250509 GTTTAAGTTG
* * * * *
10250519 ATTTAA ATTTAT TTTTAA ATTTAA ATTTATC TTGTTAA ATTTAA ATTT-T
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTA-A AT-TTAA ATTTAA ATTTAA
*
10250568 CTTTAA ATTTAA ATTTAA A-TTAGA ATTTAA ATT
1 ATTTAA ATTTAA ATTTAA ATTTA-A ATTTAA ATT
10250601 GATATTTAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
5 6 0.10
6 45 0.76
7 5 0.08
8 3 0.05
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (6 bp):
ATTTAA
Found at i:10253616 original size:30 final size:31
Alignment explanation
Indices: 10253591--10253695 Score: 110
Period size: 29 Copynumber: 3.5 Consensus size: 31
10253581 AAAAATTGTA
*
10253591 TTTTGACCCCCAAACTTCTCTAAAATTACAT
1 TTTTGACCCCAAAACTTCTCTAAAATTACAT
* *
10253622 TTTTGACCCCAAAACTTC-CAAAAATGACAT
1 TTTTGACCCCAAAACTTCTCTAAAATTACAT
* *
10253652 TTTT-ACCCTC-GAACTTC-CAAAAATTACAT
1 TTTTGACCC-CAAAACTTCTCTAAAATTACAT
*
10253681 TTTTAACCTCCAAAA
1 TTTTGACC-CCAAAA
10253696 ATTCCATTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
29 25 0.39
30 19 0.30
31 20 0.31
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.32
Consensus pattern (31 bp):
TTTTGACCCCAAAACTTCTCTAAAATTACAT
Found at i:10253654 original size:60 final size:60
Alignment explanation
Indices: 10253572--10253701 Score: 156
Period size: 60 Copynumber: 2.1 Consensus size: 60
10253562 GTAAGTCCCT
* * *
10253572 AAACTATCCAAAAATTGTATTTTGACCCCCAAACTTCTCTAAAATTACATTTTTGACC-CCA
1 AAACT-TCCAAAAATTGCATTTTGACCCCCAAACTTC-CAAAAATTACATTTTTAACCTCCA
* * *
10253633 AAACTTCCAAAAA-TGACATTTTTACCCTCGAACTTCCAAAAATTACATTTTTAACCTCCA
1 AAACTTCCAAAAATTG-CATTTTGACCCCCAAACTTCCAAAAATTACATTTTTAACCTCCA
*
10253693 AAAATTCCA
1 AAACTTCCA
10253702 TTTTAACCCC
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
59 20 0.33
60 35 0.58
61 5 0.08
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (60 bp):
AAACTTCCAAAAATTGCATTTTGACCCCCAAACTTCCAAAAATTACATTTTTAACCTCCA
Found at i:10253692 original size:22 final size:21
Alignment explanation
Indices: 10253667--10253709 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
10253657 CCCTCGAACT
10253667 TCCAAAAATTACATTTTTAACC
1 TCCAAAAATTACA-TTTTAACC
*
10253689 TCCAAAAATTCCATTTTAACC
1 TCCAAAAATTACATTTTAACC
10253710 CCTGAACTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.40, C:0.26, G:0.00, T:0.35
Consensus pattern (21 bp):
TCCAAAAATTACATTTTAACC
Found at i:10253717 original size:51 final size:51
Alignment explanation
Indices: 10253638--10253735 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
10253628 CCCCAAAACT
*
10253638 TCCAAAAATGACATTTTTACCCTCGAACTTCCAAAAATTACATTTTTAACC
1 TCCAAAAATGACATTTTAACCCTCGAACTTCCAAAAATTACATTTTTAACC
** *
10253689 TCCAAAAATTCCATTTTAACCC-CTGAACTTCCAAAAATTCCATTTTT
1 TCCAAAAATGACATTTTAACCCTC-GAACTTCCAAAAATTACATTTTT
10253736 GACCCTAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
50 1 0.02
51 41 0.98
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.35
Consensus pattern (51 bp):
TCCAAAAATGACATTTTAACCCTCGAACTTCCAAAAATTACATTTTTAACC
Found at i:10253770 original size:59 final size:59
Alignment explanation
Indices: 10253692--10253819 Score: 145
Period size: 59 Copynumber: 2.2 Consensus size: 59
10253682 TTTAACCTCC
* *
10253692 AAAAATT-CCATTTTAACCCCTGAACT-TCCAAAAATTCCATTTTTGACCCTAAAACTTTA
1 AAAAATTACCATTTTAACCCCTG-ACTGTCCAAAAACTCCATTTTTG-CCCGAAAACTTTA
* * * * * *
10253751 AAAAATTACGATTTT-ACCCCTGAGTGTCCAAGAACTCCATTTTTGGCCGGAAACTTTC
1 AAAAATTACCATTTTAACCCCTGACTGTCCAAAAACTCCATTTTTGCCCGAAAACTTTA
10253809 AAAAATTACCA
1 AAAAATTACCA
10253820 AATTACTCCC
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
58 21 0.36
59 31 0.53
60 6 0.10
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (59 bp):
AAAAATTACCATTTTAACCCCTGACTGTCCAAAAACTCCATTTTTGCCCGAAAACTTTA
Found at i:10257364 original size:30 final size:30
Alignment explanation
Indices: 10257304--10257366 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
10257294 GTAATCAAAC
*
10257304 TTGACACTTTTTCCTAATTTGGTACCTAAAT
1 TTGACACTTTTT-CTAAGTTGGTACCTAAAT
**
10257335 TTGACACTTATTT-TAAGTTGGTATTTAAAT
1 TTGACACTT-TTTCTAAGTTGGTACCTAAAT
10257365 TT
1 TT
10257367 TTTGGGATCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
30 16 0.57
31 9 0.32
32 3 0.11
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (30 bp):
TTGACACTTTTTCTAAGTTGGTACCTAAAT
Found at i:10257666 original size:29 final size:29
Alignment explanation
Indices: 10257570--10257729 Score: 105
Period size: 29 Copynumber: 5.4 Consensus size: 29
10257560 AATAAATATG
* *
10257570 GGTACCAAATTGAATCTAAAAAAAGTTTA
1 GGTACCAAATTGGATCAAAAAAAAGTTTA
*
10257599 GGTACCAAATTAGGA--AAAAATGACAAGTTCA
1 GGTACCAAATT-GGATCAAAAA--A-AAGTTTA
* *
10257630 AGTACCAAATTGGATCCAAAAAAAGTTTA
1 GGTACCAAATTGGATCAAAAAAAAGTTTA
* * *
10257659 GGTTCCAAATTAGA--AAAAAAATGTCAAATTCA
1 GGTACCAAATTGGATCAAAAAAAAGT----TT-A
* *
10257691 AGTACCAAATTGGGTCAAAAAAAA-TTTA
1 GGTACCAAATTGGATCAAAAAAAAGTTTA
*
10257719 AGTACCAAATT
1 GGTACCAAATT
10257730 AAAAATAAGT
Statistics
Matches: 102, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
27 8 0.08
28 16 0.16
29 30 0.29
30 7 0.07
31 18 0.18
32 15 0.15
33 1 0.01
34 7 0.07
ACGTcount: A:0.49, C:0.12, G:0.14, T:0.24
Consensus pattern (29 bp):
GGTACCAAATTGGATCAAAAAAAAGTTTA
Found at i:10257692 original size:61 final size:61
Alignment explanation
Indices: 10257571--10257734 Score: 226
Period size: 60 Copynumber: 2.7 Consensus size: 61
10257561 ATAAATATGG
* * * *
10257571 GTACCAAATTGAATCTAAAAAAAGTTTAGGTACCAAATTAG-GAAAAAATGACAAGTTCAA
1 GTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGACAAATTCAA
* *
10257631 GTACCAAATTGGATCCAAAAAAAGTTTAGGTTCCAAATTAGAAAAAAAATGTCAAATTCAA
1 GTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGACAAATTCAA
* * *
10257692 GTACCAAATTGGGT-CAAAAAAAATTTAAGTACCAAATTA-AAAA
1 GTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAGAAAA
10257735 TAAGTGTTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
59 4 0.04
60 60 0.65
61 29 0.31
ACGTcount: A:0.51, C:0.12, G:0.13, T:0.24
Consensus pattern (61 bp):
GTACCAAATTGGATCCAAAAAAAGTTTAGGTACCAAATTAGAAAAAAAATGACAAATTCAA
Found at i:10258194 original size:17 final size:17
Alignment explanation
Indices: 10258172--10258205 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10258162 ATTATTGTTT
* *
10258172 ACGTTTTATCTTTATCA
1 ACGTTTCATCTTCATCA
10258189 ACGTTTCATCTTCATCA
1 ACGTTTCATCTTCATCA
10258206 GTAGTTTGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.47
Consensus pattern (17 bp):
ACGTTTCATCTTCATCA
Found at i:10259008 original size:22 final size:22
Alignment explanation
Indices: 10258983--10259027 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
10258973 TTTTATTGGA
10258983 TAGTGGATATTCATGTTCTTTC
1 TAGTGGATATTCATGTTCTTTC
10259005 TAGTGGATATTCATGTTCTTTC
1 TAGTGGATATTCATGTTCTTTC
10259027 T
1 T
10259028 CTCTTGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.51
Consensus pattern (22 bp):
TAGTGGATATTCATGTTCTTTC
Found at i:10264888 original size:24 final size:24
Alignment explanation
Indices: 10264864--10264919 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
10264854 TAAAAGGCAA
*
10264864 AAATATAAATAGCATTAAAAACAAAT
1 AAATA-AAATA-CATAAAAAACAAAT
*
10264890 AAATAAAATACATAAAAAAC-ATT
1 AAATAAAATACATAAAAAACAAAT
10264913 AAATAAA
1 AAATAAA
10264920 TAAGATTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.32
24 9 0.32
25 5 0.18
26 5 0.18
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.21
Consensus pattern (24 bp):
AAATAAAATACATAAAAAACAAAT
Found at i:10264895 original size:4 final size:4
Alignment explanation
Indices: 10264886--10264993 Score: 60
Period size: 4 Copynumber: 25.8 Consensus size: 4
10264876 CATTAAAAAC
* * *
10264886 AAAT AAAT AAAAT ACAT AAAA AACATT AAAT AAAT AAGATT AAAT AAAGG
1 AAAT AAAT -AAAT AAAT AAAT AA-A-T AAAT AAAT AA-A-T AAAT AAA-T
* * * *
10264936 CAAG AATAT AAAT AACAT AAA- AAAT GAAT -AAC AAAT AAAT AAAT AAAT
1 AAAT AA-AT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
10264984 -AAT AAAT AAA
1 AAAT AAAT AAA
10264994 AATTAATTGA
Statistics
Matches: 82, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
3 8 0.10
4 52 0.63
5 17 0.21
6 5 0.06
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:10264904 original size:9 final size:9
Alignment explanation
Indices: 10264886--10264994 Score: 50
Period size: 9 Copynumber: 12.3 Consensus size: 9
10264876 CATTAAAAAC
10264886 AAATAAATA
1 AAATAAATA
*
10264895 AAATACATA
1 AAATAAATA
*
10264904 AAA-AACATT
1 AAATAA-ATA
10264913 AAATAAATA
1 AAATAAATA
*
10264922 AGATTAAATA
1 A-AATAAATA
*** *
10264932 AAGGCAAGA
1 AAATAAATA
*
10264941 ATATAAATA
1 AAATAAATA
*
10264950 ACAT-AA-A
1 AAATAAATA
*
10264957 AAATGAATAA
1 AAATAAAT-A
10264967 CAAATAAAT-
1 -AAATAAATA
10264976 AAATAAAT-
1 AAATAAATA
10264984 -AATAAATA
1 AAATAAATA
10264992 AAA
1 AAA
10264995 ATTAATTGAA
Statistics
Matches: 74, Mismatches: 17, Indels: 18
0.68 0.16 0.17
Matches are distributed among these distances:
7 11 0.15
8 13 0.18
9 32 0.43
10 11 0.15
11 7 0.09
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (9 bp):
AAATAAATA
Found at i:10264927 original size:14 final size:13
Alignment explanation
Indices: 10264886--10264933 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
10264876 CATTAAAAAC
*
10264886 AAATAAATAAAAT
1 AAATAAATAAATT
* *
10264899 ACATAAAAAACATT
1 AAATAAATAA-ATT
10264913 AAATAAATAAGATT
1 AAATAAATAA-ATT
10264927 AAATAAA
1 AAATAAA
10264934 GGCAAGAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
13 8 0.29
14 20 0.71
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (13 bp):
AAATAAATAAATT
Found at i:10264964 original size:22 final size:22
Alignment explanation
Indices: 10264939--10264987 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
10264929 ATAAAGGCAA
*
10264939 GAATATAAATAACATAAA-AAAT
1 GAATACAAATAA-ATAAATAAAT
10264961 GAATAACAAATAAATAAATAAAT
1 GAAT-ACAAATAAATAAATAAAT
10264984 -AATA
1 GAATA
10264988 AATAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 12 0.50
23 11 0.46
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.22
Consensus pattern (22 bp):
GAATACAAATAAATAAATAAAT
Found at i:10264984 original size:19 final size:18
Alignment explanation
Indices: 10264943--10264995 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 18
10264933 AGGCAAGAAT
10264943 ATAAATAAC--ATAAAAA
1 ATAAATAACAAATAAAAA
*
10264959 ATGAATAACAAATAAATAA
1 ATAAATAACAAATAAA-AA
*
10264978 ATAAATAATAAATAAAAA
1 ATAAATAACAAATAAAAA
10264996 TTAATTGAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 8 0.26
18 7 0.23
19 16 0.52
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.21
Consensus pattern (18 bp):
ATAAATAACAAATAAAAA
Found at i:10266235 original size:26 final size:28
Alignment explanation
Indices: 10266187--10266264 Score: 90
Period size: 26 Copynumber: 2.8 Consensus size: 28
10266177 AGGCAAGAAT
*
10266187 ATAAATAACATAAAAAATGAATAAC-AA
1 ATAAATAACATAAAAAATAAATAACTAA
*
10266214 ATAAATAA-ATAAAAATTAAAT-ACTAA
1 ATAAATAACATAAAAAATAAATAACTAA
*
10266240 ATAAGATAATATAAACAAATAAATA
1 ATAA-ATAACATAAA-AAATAAATA
10266265 GGACCAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.05
26 17 0.40
27 12 0.28
28 5 0.12
29 7 0.16
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.23
Consensus pattern (28 bp):
ATAAATAACATAAAAAATAAATAACTAA
Found at i:10266281 original size:4 final size:4
Alignment explanation
Indices: 10266127--10266264 Score: 70
Period size: 4 Copynumber: 33.8 Consensus size: 4
10266117 TATAAATGGC
* * *
10266127 ATAA AAAA ATAA ATAAA ATAC ATAA A-AC ATAA ATAA ATAA GATTAA ATAA
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA -A-TAA ATAA
** * * *
10266177 AGGCA AGAA TATAA ATAA CATAA A-AA ATGA AT-A ACAA ATAA ATAA ATAA
1 A-TAA ATAA -ATAA ATAA -ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
* * *
10266226 A-AA TTAA AT-A CTAA ATAA GATAA TATAA ACAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA -ATAA -ATAA ATAA ATAA ATA
10266265 GGACCAAATT
Statistics
Matches: 102, Mismatches: 20, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
3 11 0.11
4 65 0.64
5 23 0.23
6 3 0.03
ACGTcount: A:0.69, C:0.05, G:0.04, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:10266382 original size:30 final size:29
Alignment explanation
Indices: 10266335--10266402 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
10266325 GAGGCAAAAT
*
10266335 TAAATAAAGGACTAAATTGAAAACACAAA
1 TAAATAAAGGACTAAATTAAAAACACAAA
*
10266364 TAAATTAAAGGTAC-AAATTAAAAACAGAAA
1 TAAA-TAAAGG-ACTAAATTAAAAACACAAA
10266394 TAAAATAAA
1 T-AAATAAA
10266403 ATTAAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 4 0.12
30 25 0.74
31 5 0.15
ACGTcount: A:0.65, C:0.07, G:0.09, T:0.19
Consensus pattern (29 bp):
TAAATAAAGGACTAAATTAAAAACACAAA
Found at i:10266401 original size:5 final size:5
Alignment explanation
Indices: 10266391--10266429 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
10266381 TTAAAAACAG
* *
10266391 AAATA AAATA AAATTA AAATT AATTA AAATA AAATA AAA
1 AAATA AAATA AAA-TA AAATA AAATA AAATA AAATA AAA
10266430 ATCACAGGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
AAATA
Found at i:10272044 original size:31 final size:30
Alignment explanation
Indices: 10271939--10272046 Score: 91
Period size: 31 Copynumber: 3.6 Consensus size: 30
10271929 TTAATTTAAC
* * *
10271939 ATTTGGTACCTGAACTTGATATTTTTTTTCTA
1 ATTTGGTACCTAAACTTG-TA-CTTTTTCCTA
*
10271971 ATTTGGTACCTAAACTT-T--TTTGGTCC-A
1 ATTTGGTACCTAAACTTGTACTTT-TTCCTA
*
10271998 ATTTGGTA-ATCAAACTTGTCACTTTTTCCTA
1 ATTTGGTACCT-AAACTTGT-ACTTTTTCCTA
10272029 ATTTGGTACCTAAACTTG
1 ATTTGGTACCTAAACTTG
10272047 ACACTTATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
26 1 0.02
27 18 0.29
28 3 0.05
30 4 0.06
31 19 0.31
32 17 0.27
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (30 bp):
ATTTGGTACCTAAACTTGTACTTTTTCCTA
Found at i:10272067 original size:30 final size:30
Alignment explanation
Indices: 10272009--10272072 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
10271999 TTTGGTAATC
* *
10272009 AAACTTGTCACTTTTTCCTAATTTGGTACCT
1 AAACTTGACACTTTTT-CTAAGTTGGTACCT
*
10272040 AAACTTGACACTTATTT-TAAGTTGGTACTT
1 AAACTTGACACTT-TTTCTAAGTTGGTACCT
10272070 AAA
1 AAA
10272073 TTTTTTGGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 14 0.48
31 12 0.41
32 3 0.10
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (30 bp):
AAACTTGACACTTTTTCTAAGTTGGTACCT
Found at i:10272104 original size:89 final size:90
Alignment explanation
Indices: 10271939--10272125 Score: 227
Period size: 89 Copynumber: 2.1 Consensus size: 90
10271929 TTAATTTAAC
* * * * *
10271939 ATTTGGTACCTGAACTTGATATTTTTTTTCTAATTTGGTACCTAAACTTTTTTGGTCCAATTTGG
1 ATTTGGTACCTAAACTTGACATCTTATTTCTAAGTTGGTACCTAAACTTTTTTGGTCCAATTTGG
*
10272004 TAATCAAACTTGTCACTTTTTCCTA
66 TAATCAAACTTGACACTTTTTCCTA
*
10272029 ATTTGGTACCTAAACTTGACA-CTTATTT-TAAGTTGGTACTTAAA-TTTTTTGGGATCCAATTT
1 ATTTGGTACCTAAACTTGACATCTTATTTCTAAGTTGGTACCTAAACTTTTTT-GG-TCCAATTT
* ** *
10272091 GGTACTTGAACTTGACTCTTTTTCCTA
64 GGTAATCAAACTTGACACTTTTTCCTA
*
10272118 CTTTGGTA
1 ATTTGGTA
10272126 TCTTATCTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
87 6 0.07
88 16 0.19
89 42 0.51
90 19 0.23
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.47
Consensus pattern (90 bp):
ATTTGGTACCTAAACTTGACATCTTATTTCTAAGTTGGTACCTAAACTTTTTTGGTCCAATTTGG
TAATCAAACTTGACACTTTTTCCTA
Found at i:10272399 original size:61 final size:60
Alignment explanation
Indices: 10272282--10272469 Score: 222
Period size: 60 Copynumber: 3.1 Consensus size: 60
10272272 ATAAATATGG
* * * *
10272282 GTACCAAATTGAATCTAAAAAAAGTTTAGGTACCAAATT-AGGAAAAAATGCCAAGTTCAA
1 GTACCAAATTGAGTCCAAAAAAAGTTTA-GTACCAAATTAAGAAAAAAATGTCAAGTTCAA
* *
10272342 GTACCAAATTGGGTCCAAAAAAAGTTTAGCTACCAAATTAAGAAAAAAATGTCAAGTTCAG
1 GTACCAAATTGAGTCCAAAAAAAGTTTAG-TACCAAATTAAGAAAAAAATGTCAAGTTCAA
* * * *
10272403 GTACCAAATTGAGT-C-AAAAAAGTTTATGTACCAAATTAA-AAATAAGTGTTAAGTTTAA
1 GTACCAAATTGAGTCCAAAAAAAGTTTA-GTACCAAATTAAGAAAAAAATGTCAAGTTCAA
*
10272461 ATACCAAAT
1 GTACCAAAT
10272470 GTATTATTAA
Statistics
Matches: 112, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
58 22 0.20
59 23 0.21
60 36 0.32
61 31 0.28
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (60 bp):
GTACCAAATTGAGTCCAAAAAAAGTTTAGTACCAAATTAAGAAAAAAATGTCAAGTTCAA
Found at i:10277157 original size:52 final size:52
Alignment explanation
Indices: 10276998--10277183 Score: 241
Period size: 51 Copynumber: 3.6 Consensus size: 52
10276988 GAATTCATAC
* * * *
10276998 ACTCACGATGACACTAAGTCATC-AAACCTTTAATCCATTATGGATTCATTT
1 ACTCACGATGACACTTAGTCATCGAACCCTTTAATCCATAAAGGATTCATTT
* * * *
10277049 ACTCACGATAACACTTAGTCATCGGA-CCTTTAATCCGTAAAGGTTTCATTT
1 ACTCACGATGACACTTAGTCATCGAACCCTTTAATCCATAAAGGATTCATTT
* * *
10277100 ACTCACGATGACACTTGGTCATCGAACCCTATAATCTATAAAGGATTCATTT
1 ACTCACGATGACACTTAGTCATCGAACCCTTTAATCCATAAAGGATTCATTT
* *
10277152 GCTCACGATGACACTTAGTCATCGGACCCTTT
1 ACTCACGATGACACTTAGTCATCGAACCCTTT
10277184 CGTTTATAGC
Statistics
Matches: 115, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
51 65 0.57
52 50 0.43
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (52 bp):
ACTCACGATGACACTTAGTCATCGAACCCTTTAATCCATAAAGGATTCATTT
Found at i:10278331 original size:98 final size:99
Alignment explanation
Indices: 10278184--10278383 Score: 271
Period size: 98 Copynumber: 2.0 Consensus size: 99
10278174 AACCTTGGAA
* *
10278184 AAGGATATTTGATTATCTCGATTTGAAGAAAAGTCGCACCTAGTAAGTTAAGGCACAAA-TTTCC
1 AAGGATATTCGATTATCTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCC
10278248 AAAA-TCAAAGATAAAGAAACATTGCCTCGAT-TT
66 AAAACTCAAA-ATAAAGAAACATTGCCTCGATCTT
* * *
10278281 AAGGGTATTCGATTATTTCGATTTGAATGAAAAATCGCGCCTAGTAAGTTAAGGCACAAATTTTT
1 AAGGATATTCGATTATCTCGATTTGAA-GAAAAATCGCACCTAGTAAGTTAAGGCACAAA-TTTT
* * * *
10278346 TCAAAACTCGAAATAAAGGAATATTGCCTCGATCTT
64 CCAAAACTCAAAATAAAGAAACATTGCCTCGATCTT
10278382 AA
1 AA
10278384 AGGTTCACGA
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
97 24 0.27
98 30 0.34
100 27 0.30
101 8 0.09
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (99 bp):
AAGGATATTCGATTATCTCGATTTGAAGAAAAATCGCACCTAGTAAGTTAAGGCACAAATTTTCC
AAAACTCAAAATAAAGAAACATTGCCTCGATCTT
Found at i:10278720 original size:30 final size:29
Alignment explanation
Indices: 10278648--10278915 Score: 135
Period size: 29 Copynumber: 9.1 Consensus size: 29
10278638 CTTCGGGAAC
* * *
10278648 AAAATGGTAATTTTTGGAAGGTTCGAGGTT
1 AAAATGGTAATTTTTAGAA-ATTCGAGGGT
**** *
10278678 AAAAACAAAATTTTTAGACATTCGAGGGGT
1 AAAATGGTAATTTTTAGAAATTCGA-GGGT
* *
10278708 AAAATGGTAATTTTAAAAAGATTCG-GGGT
1 AAAATGGTAATTTTTAGAA-ATTCGAGGGT
* * *
10278737 CAAAAATGGT-GTTTTTA-AACATTTGAGCGT
1 --AAAATGGTAATTTTTAGAA-ATTCGAGGGT
* *
10278767 AAAATGGTAA-TTTTGGAAGGATTCGAGGTT
1 AAAATGGTAATTTTTAGAA--ATTCGAGGGT
*** *
10278797 ACAAA-CAAAATTTTTAGACATTCGAGGGT
1 A-AAATGGTAATTTTTAGAAATTCGAGGGT
* *
10278826 AAAATGGTAA-TTTTGGAAAGTTAGAGGGT
1 AAAATGGTAATTTTTAGAAA-TTCGAGGGT
10278855 AAAAAT-GTAATTTTTAGAAAATTC-AGGGT
1 -AAAATGGTAATTTTTAG-AAATTCGAGGGT
*
10278884 AAAAATGG-AATTTTGA-AAATTC-AGGGGT
1 -AAAATGGTAATTTTTAGAAATTCGA-GGGT
10278912 AAAA
1 AAAA
10278916 ACATAATTTT
Statistics
Matches: 180, Mismatches: 41, Indels: 37
0.70 0.16 0.14
Matches are distributed among these distances:
27 11 0.06
28 26 0.14
29 59 0.33
30 59 0.33
31 25 0.14
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.31
Consensus pattern (29 bp):
AAAATGGTAATTTTTAGAAATTCGAGGGT
Found at i:10278790 original size:59 final size:59
Alignment explanation
Indices: 10278648--10278898 Score: 249
Period size: 59 Copynumber: 4.3 Consensus size: 59
10278638 CTTCGGGAAC
10278648 AAAATGGTAATTTTTGGAAGG-TTCGAGGTTAAAAACAAAATTTTTAGACATTCGAGGGGT
1 AAAATGGTAA-TTTTGGAAGGATTCGAGGTTAAAAACAAAATTTTTAGACATTCGA-GGGT
** * * * ***** * * *
10278708 AAAATGGTAATTTTAAAAAGATTCGGGGTCAAAAATGGTGTTTTTAAACATTTGAGCGT
1 AAAATGGTAATTTTGGAAGGATTCGAGGTTAAAAACAAAATTTTTAGACATTCGAGGGT
*
10278767 AAAATGGTAATTTTGGAAGGATTCGAGGTTACAAACAAAATTTTTAGACATTCGAGGGT
1 AAAATGGTAATTTTGGAAGGATTCGAGGTTAAAAACAAAATTTTTAGACATTCGAGGGT
* * * *** *
10278826 AAAATGGTAATTTTGGAAAG-TTAGAGGGTAAAAATGTAATTTTTAGAAAATTC-AGGGT
1 AAAATGGTAATTTTGGAAGGATTCGAGGTTAAAAACAAAATTTTTAG-ACATTCGAGGGT
10278884 AAAAATGG-AATTTTG
1 -AAAATGGTAATTTTG
10278899 AAAATTCAGG
Statistics
Matches: 153, Mismatches: 35, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
58 32 0.21
59 86 0.56
60 35 0.23
ACGTcount: A:0.39, C:0.06, G:0.24, T:0.32
Consensus pattern (59 bp):
AAAATGGTAATTTTGGAAGGATTCGAGGTTAAAAACAAAATTTTTAGACATTCGAGGGT
Found at i:10278946 original size:30 final size:29
Alignment explanation
Indices: 10278826--10279045 Score: 148
Period size: 29 Copynumber: 7.5 Consensus size: 29
10278816 ATTCGAGGGT
* * *
10278826 AAAATGGTAATTTTGGAAAGTTAGAGGGT-A
1 AAAAT-GTAATTTTTGAAAATTTG-GGGTCA
**
10278856 AAAATGTAATTTTTAGAAAATTCAGGGT-A
1 AAAATGTAATTTTT-GAAAATTTGGGGTCA
* *
10278885 AAAATGGAA-TTTTGAAAATTCAGGGGT-A
1 AAAATGTAATTTTTGAAAATT-TGGGGTCA
**
10278913 AAAACATAATTTTTGGAAAATTTGGGGTCA
1 AAAATGTAATTTTT-GAAAATTTGGGGTCA
* * *
10278943 AAAATGGAA-TTTTAAAAAGCTTGGGGCTC-
1 AAAATGTAATTTTTGAAAA-TTTGGGG-TCA
*
10278972 AAAATGTAATTTTTGGAAAAATTTAGGGTCA
1 AAAATGTAATTTTT-G-AAAATTTGGGGTCA
* * * *
10279003 AAAATGGAATTTTGGAAAGTTCGAGGGTC-
1 AAAATGTAATTTTTGAAAATTTG-GGGTCA
10279032 AAAATGTAATTTTT
1 AAAATGTAATTTTT
10279046 TGATAGTTTA
Statistics
Matches: 151, Mismatches: 27, Indels: 25
0.74 0.13 0.12
Matches are distributed among these distances:
27 7 0.05
28 19 0.13
29 65 0.43
30 39 0.26
31 17 0.11
32 4 0.03
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (29 bp):
AAAATGTAATTTTTGAAAATTTGGGGTCA
Found at i:10279003 original size:60 final size:58
Alignment explanation
Indices: 10278826--10279045 Score: 257
Period size: 60 Copynumber: 3.7 Consensus size: 58
10278816 ATTCGAGGGT
* * * * *
10278826 AAAATGGTAATTTTGGAAAGTTAGAGGGTAAAAATGTAATTTTTAGAAAATTCAGGGT-A
1 AAAATGG-AATTTTGAAAAGTTCG-GGGTCAAAATGTAATTTTTGGAAAATTTAGGGTCA
* ** *
10278885 AAAATGGAATTTTGAAAA-TTCAGGGGTAAAAACATAATTTTTGGAAAATTTGGGGTCA
1 AAAATGGAATTTTGAAAAGTTC-GGGGTCAAAATGTAATTTTTGGAAAATTTAGGGTCA
*
10278943 AAAATGGAATTTTAAAAAGCTT-GGGGCTCAAAATGTAATTTTTGGAAAAATTTAGGGTCA
1 AAAATGGAATTTTGAAAAG-TTCGGGG-TCAAAATGTAATTTTTGG-AAAATTTAGGGTCA
*
10279003 AAAATGGAATTTTGGAAAGTTCGAGGGTCAAAATGTAATTTTT
1 AAAATGGAATTTTGAAAAGTTCG-GGGTCAAAATGTAATTTTT
10279046 TGATAGTTTA
Statistics
Matches: 139, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
57 30 0.22
58 33 0.24
59 24 0.17
60 49 0.35
61 3 0.02
ACGTcount: A:0.40, C:0.05, G:0.23, T:0.32
Consensus pattern (58 bp):
AAAATGGAATTTTGAAAAGTTCGGGGTCAAAATGTAATTTTTGGAAAATTTAGGGTCA
Found at i:10280958 original size:6 final size:6
Alignment explanation
Indices: 10280940--10281026 Score: 51
Period size: 6 Copynumber: 15.5 Consensus size: 6
10280930 ACTTTCAAAG
** * * * *
10280940 TTTAAA TTT-AA TTTAAA -TTAAA TCCAAA CTCAAA -ATAAG TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * *
10280985 TTTAAA -GTAAA TTCAAA TTTAAA --TAAA TTTAGA TTTAAA TTT
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT
10281027 TAAAAATGGG
Statistics
Matches: 60, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
4 4 0.07
5 16 0.27
6 40 0.67
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.41
Consensus pattern (6 bp):
TTTAAA
Found at i:10280962 original size:16 final size:16
Alignment explanation
Indices: 10280941--10281025 Score: 55
Period size: 17 Copynumber: 5.1 Consensus size: 16
10280931 CTTTCAAAGT
10280941 TTAAATTTAATTTAAA
1 TTAAATTTAATTTAAA
** * *
10280957 TTAAATCCAAACTCAAA
1 TTAAAT-TTAATTTAAA
* *
10280974 ATAAGTTTAAATTTAAA
1 TTAAATTT-AATTTAAA
* *
10280991 GTAAATTCAAATTTAAA
1 TTAAATT-TAATTTAAA
10281008 -TAAATTTAGATTTAAA
1 TTAAATTTA-ATTTAAA
10281024 TT
1 TT
10281026 TTAAAAATGG
Statistics
Matches: 50, Mismatches: 14, Indels: 9
0.68 0.19 0.12
Matches are distributed among these distances:
15 1 0.02
16 19 0.38
17 30 0.60
ACGTcount: A:0.51, C:0.06, G:0.04, T:0.40
Consensus pattern (16 bp):
TTAAATTTAATTTAAA
Found at i:10281004 original size:17 final size:16
Alignment explanation
Indices: 10280949--10281024 Score: 62
Period size: 17 Copynumber: 4.6 Consensus size: 16
10280939 GTTTAAATTT
*
10280949 AATTTAAATTAAATCCA
1 AATTTAAA-TAAATTCA
** * *
10280966 AACTCAAAATAAGTTTA
1 AA-TTTAAATAAATTCA
10280983 AATTTAAAGTAAATTCA
1 AATTTAAA-TAAATTCA
*
10281000 AATTTAAATAAATTTA
1 AATTTAAATAAATTCA
*
10281016 GATTTAAAT
1 AATTTAAAT
10281025 TTTAAAAATG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
16 19 0.41
17 23 0.50
18 4 0.09
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.37
Consensus pattern (16 bp):
AATTTAAATAAATTCA
Found at i:10282412 original size:24 final size:23
Alignment explanation
Indices: 10282376--10282438 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
10282366 AAACTCTGTT
*
10282376 TGGGCTCAAATGAGCTAGCTTATC
1 TGGGCTCATATGAGCTA-CTTATC
* * *
10282400 TGGGCTCGTATGAGCT-TTTGTC
1 TGGGCTCATATGAGCTACTTATC
10282422 TGGGCTCATATGAGCTA
1 TGGGCTCATATGAGCTA
10282439 AATTTTTGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
22 19 0.58
24 14 0.42
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (23 bp):
TGGGCTCATATGAGCTACTTATC
Found at i:10283547 original size:20 final size:19
Alignment explanation
Indices: 10283509--10283551 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
10283499 AATATTTATT
*
10283509 TAATATTTTAATTAAAATAA
1 TAATATTTTAATAAAAAT-A
10283529 TAATATTTT-ATAAACAATA
1 TAATATTTTAATAAA-AATA
10283548 TAAT
1 TAAT
10283552 TATATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATATTTTAATAAAAATA
Found at i:10284020 original size:15 final size:15
Alignment explanation
Indices: 10284000--10284032 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
10283990 CAAATTGAAT
10284000 AAATGGCA-AAAATAC
1 AAATGGCATAAAA-AC
10284015 AAATGGCATAAAAAC
1 AAATGGCATAAAAAC
10284030 AAA
1 AAA
10284033 CAAATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (15 bp):
AAATGGCATAAAAAC
Found at i:10284114 original size:11 final size:11
Alignment explanation
Indices: 10284088--10284174 Score: 58
Period size: 11 Copynumber: 7.7 Consensus size: 11
10284078 GCAAGAATAT
10284088 AAATAACATAAA
1 AAATAA-ATAAA
* *
10284100 AAATGAATAAC
1 AAATAAATAAA
10284111 AAATAAATAAA
1 AAATAAATAAA
10284122 TAAATAAA-AATTA
1 -AAATAAATAA--A
10284135 AATACTAAAT--A
1 AA-A-TAAATAAA
10284146 AAATAATATAAA
1 AAATAA-ATAAA
10284158 AAAT--ATAAA
1 AAATAAATAAA
10284167 AAATAAAT
1 AAATAAAT
10284175 GGGACCAAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 23
0.69 0.05 0.26
Matches are distributed among these distances:
9 12 0.20
10 3 0.05
11 20 0.33
12 19 0.32
13 2 0.03
14 4 0.07
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.23
Consensus pattern (11 bp):
AAATAAATAAA
Found at i:10284131 original size:30 final size:31
Alignment explanation
Indices: 10284086--10284157 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
10284076 AGGCAAGAAT
*
10284086 ATAAATAACATAAAAAATGAATAAC-AAAT-AA
1 ATAAATAA-ATAAAAAATAAAT-ACTAAATAAA
*
10284117 ATAAATAAATAAAAATTAAATACTAAATAAA
1 ATAAATAAATAAAAAATAAATACTAAATAAA
10284148 ATAATATAAA
1 ATAA-ATAAA
10284158 AAATATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
29 2 0.06
30 15 0.42
31 14 0.39
32 5 0.14
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (31 bp):
ATAAATAAATAAAAAATAAATACTAAATAAA
Found at i:10284174 original size:30 final size:29
Alignment explanation
Indices: 10284083--10284174 Score: 91
Period size: 29 Copynumber: 3.1 Consensus size: 29
10284073 TAAAGGCAAG
*
10284083 AATATAAATAACATAAAAAATGAATAACAAATA
1 AATA-AAATAA-ATAAAAAAT--ATAAAAAATA
* *
10284116 AAT-AAATAAAT-AAAAAT-TAAATACTA
1 AATAAAATAAATAAAAAATATAAAAAATA
10284142 AATAAAATAATATAAAAAATATAAAAAATA
1 AATAAAATAA-ATAAAAAATATAAAAAATA
10284172 AAT
1 AAT
10284175 GGGACCAAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
26 9 0.18
27 6 0.12
28 2 0.04
29 12 0.24
30 12 0.24
31 6 0.12
33 3 0.06
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (29 bp):
AATAAAATAAATAAAAAATATAAAAAATA
Found at i:10284192 original size:4 final size:4
Alignment explanation
Indices: 10284034--10284174 Score: 67
Period size: 4 Copynumber: 34.0 Consensus size: 4
10284024 AAAAACAAAC
* * * * *
10284034 AAAT AAAAT ACAT AAAA ACAAT AAAT AAAT AAGATT AAAT AAAGG CAAG
1 AAAT -AAAT AAAT AAAT A-AAT AAAT AAAT AA-A-T AAAT AAA-T AAAT
* *
10284083 AATAT AAAT AACAT AAA- AAAT GAAT -AAC AAAT AAAT AAAT AAAT AAA-
1 AA-AT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
10284130 AATT AAAT -ACT AAAT AAAAT AATAT AAA- AAAT ATAAA AAAT AAAT
1 AAAT AAAT AAAT AAAT -AAAT AA-AT AAAT AAAT A-AAT AAAT AAAT
10284175 GGGACCAAAT
Statistics
Matches: 105, Mismatches: 17, Indels: 29
0.70 0.11 0.19
Matches are distributed among these distances:
3 12 0.11
4 61 0.58
5 29 0.28
6 3 0.03
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:10285325 original size:23 final size:23
Alignment explanation
Indices: 10285281--10285325 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
10285271 GAGCTGGTTG
*
10285281 ACGTGGCACTGGAATGGCGGTCA
1 ACGTGGCACTGGAACGGCGGTCA
* *
10285304 ACGTGGCACTGGAGCGGGGGTC
1 ACGTGGCACTGGAACGGCGGTC
10285326 GGACATGGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.22, G:0.44, T:0.16
Consensus pattern (23 bp):
ACGTGGCACTGGAACGGCGGTCA
Found at i:10291074 original size:58 final size:58
Alignment explanation
Indices: 10291009--10291121 Score: 165
Period size: 58 Copynumber: 1.9 Consensus size: 58
10290999 ATAGCCATTG
* *
10291009 ATATTAAATCTTTA-TTTTCTCATATATGAATTCAAAAGAAAATGCCAAAAAAAAACCC
1 ATATTAAATCTTTATTTTTC-CATATATGAACTCAAAAGAAAATACCAAAAAAAAACCC
* * *
10291067 ATATTAAATTTTTATTTTTCCATATCTGAACTCAAAAGAAAATACTAAAAAAAAA
1 ATATTAAATCTTTATTTTTCCATATATGAACTCAAAAGAAAATACCAAAAAAAAA
10291122 ACTAGAGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
58 44 0.90
59 5 0.10
ACGTcount: A:0.50, C:0.13, G:0.04, T:0.33
Consensus pattern (58 bp):
ATATTAAATCTTTATTTTTCCATATATGAACTCAAAAGAAAATACCAAAAAAAAACCC
Found at i:10294269 original size:30 final size:30
Alignment explanation
Indices: 10294202--10294270 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 30
10294192 TCCAATTTGT
* *
10294202 TACTCAAACTTGACACTTTTTCCTAATTTGA
1 TACTTAAACTTGACACTTTTT-CTAAGTTGA
*
10294233 TACTTAAACTTGACACTTTTAT-TAAGTTGG
1 TACTTAAACTTGACACTTTT-TCTAAGTTGA
10294263 TACTTAAA
1 TACTTAAA
10294271 TTTTTTGGGG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 14 0.41
31 19 0.56
32 1 0.03
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.42
Consensus pattern (30 bp):
TACTTAAACTTGACACTTTTTCTAAGTTGA
Found at i:10294289 original size:89 final size:91
Alignment explanation
Indices: 10294146--10294320 Score: 230
Period size: 89 Copynumber: 1.9 Consensus size: 91
10294136 ATTTGGCACC
* * * * *
10294146 TAAACTTGACATTTTTTTTCTAATTTGGTACCTAAACTTTTTTTGGTCCAATTTGTTACTCAAAC
1 TAAACTTGACATCTTTTATCTAAGTTGGTACCTAAACTTTTTTGGGTCCAATTTGGTACTCAAAC
10294211 TTGACACTTTTTCCTAATTTGATACT
66 TTGACACTTTTTCCTAATTTGATACT
* **
10294237 TAAACTTGACA-CTTTTAT-TAAGTTGGTACTTAAA-TTTTTTGGGGTCCAATTTGGTACTTGAA
1 TAAACTTGACATCTTTTATCTAAGTTGGTACCTAAACTTTTTT-GGGTCCAATTTGGTACTCAAA
* *
10294299 CTTGACTCTTTTTCCTACTTTG
65 CTTGACACTTTTTCCTAATTTG
10294321 GTACCTTATC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 6 0.08
89 51 0.70
90 5 0.07
91 11 0.15
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.47
Consensus pattern (91 bp):
TAAACTTGACATCTTTTATCTAAGTTGGTACCTAAACTTTTTTGGGTCCAATTTGGTACTCAAAC
TTGACACTTTTTCCTAATTTGATACT
Found at i:10294658 original size:21 final size:21
Alignment explanation
Indices: 10294634--10294690 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
10294624 AGTGCAGACC
* *
10294634 TCTACTGATACAAGTGACAGT
1 TCTACCGATACAAGTGACACT
*
10294655 TCTACCGATACAAGTGACTCT
1 TCTACCGATACAAGTGACACT
*
10294676 TCTACCGAAACAAGT
1 TCTACCGATACAAGT
10294691 CTTACTTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (21 bp):
TCTACCGATACAAGTGACACT
Found at i:10295470 original size:52 final size:52
Alignment explanation
Indices: 10295359--10295644 Score: 319
Period size: 52 Copynumber: 5.5 Consensus size: 52
10295349 TTTGATATTT
* * ** * *
10295359 ACGATGACACAGGAGTCATCGGACCT-TTAATCCATACTGGGAATCATGTACTC
1 ACGATGACACA-TAGTCATCGGACCTCATAATCCATA-AAGGATTCATATACTC
* *
10295412 ACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGGTTCATATGCTC
1 ACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCATATACTC
* * * * *
10295464 ATGATGACACATAGTCATCAGACCTCATTAT-CAGTAAAGCATTCATACACTC
1 ACGATGACACATAGTCATCGGACCTCATAATCCA-TAAAGGATTCATATACTC
*
10295516 ACGATGACACATAGTCATCGGACCAT-ATAATCCGTAAAGGATTCATATACTC
1 ACGATGACACATAGTCATCGGACC-TCATAATCCATAAAGGATTCATATACTC
* * * *
10295568 ACAATGACACATAATCATTGAACCTCATAATCTC-TAAAGGATTCATATACTC
1 ACGATGACACATAGTCATCGGACCTCATAATC-CATAAAGGATTCATATACTC
* *
10295620 ACGATGACAAATAGTCATCGAACCT
1 ACGATGACACATAGTCATCGGACCT
10295645 ATTCCATTTA
Statistics
Matches: 198, Mismatches: 29, Indels: 13
0.82 0.12 0.05
Matches are distributed among these distances:
51 3 0.02
52 172 0.87
53 23 0.12
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (52 bp):
ACGATGACACATAGTCATCGGACCTCATAATCCATAAAGGATTCATATACTC
Found at i:10300863 original size:21 final size:21
Alignment explanation
Indices: 10300832--10300905 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
10300822 AGTACAGACC
* *
10300832 TCTACCAATACAAGTGACAGT
1 TCTACCGATACAAGTGACACT
* * *
10300853 TCTTCCGATACAACTGACTCT
1 TCTACCGATACAAGTGACACT
* ***
10300874 TCTACCGAAACAAGTCTTACT
1 TCTACCGATACAAGTGACACT
10300895 TCTACCGATAC
1 TCTACCGATAC
10300906 CAAAAACTTC
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (21 bp):
TCTACCGATACAAGTGACACT
Found at i:10301650 original size:52 final size:51
Alignment explanation
Indices: 10301568--10301857 Score: 334
Period size: 52 Copynumber: 5.6 Consensus size: 51
10301558 TGAATATTTG
* * ** *
10301568 ATACTCACGATGACACAGAGTCATCAGACCTTTAATCCGTATTGGGAATCAT
1 ATACTCACGATGACACATAGTCATCAGACCTATAATCCGTA-AAGGATTCAT
* * **
10301620 ATACTCACGGTGACACATAGTCATCGGACCTCATAATCCGTAAAACATTCAT
1 ATACTCACGATGACACATAGTCATCAGACCT-ATAATCCGTAAAGGATTCAT
* * * *
10301672 ATGCTCACGATGACACATAGTCATCGGACC--TCATCTGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCAGACCTATAATCCGTAAAGGATTCAT
* *
10301721 ACACTCACGATGACACATAGTCATCAGACCACATAATCCGTAAAGGATTCAT
1 ATACTCACGATGACACATAGTCATCAGACC-TATAATCCGTAAAGGATTCAT
* * * *
10301773 ATACTCACGATGACACATATTCAT-TGCATCTCATAATCCGTAAAAGATTCAT
1 ATACTCACGATGACACATAGTCATCAG-ACCT-ATAATCCGTAAAGGATTCAT
*
10301825 ATTCTCACGATGACACATAGTCATCAGACCTAT
1 ATACTCACGATGACACATAGTCATCAGACCTAT
10301858 TTCATTTACG
Statistics
Matches: 201, Mismatches: 30, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
49 42 0.21
51 3 0.01
52 146 0.73
53 10 0.05
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (51 bp):
ATACTCACGATGACACATAGTCATCAGACCTATAATCCGTAAAGGATTCAT
Found at i:10301756 original size:101 final size:102
Alignment explanation
Indices: 10301568--10301854 Score: 351
Period size: 101 Copynumber: 2.8 Consensus size: 102
10301558 TGAATATTTG
* * ** * *
10301568 ATACTCACGATGACACAGAGTCATCAGACCTTTAATCCGTATTGGGAATCATATACTCACGGTGA
1 ATACTCACGATGACACATAGTCATCGGACC-TTAATCCGTA-AAGGATTCATATACTCACGATGA
* *
10301633 CACATAGTCATCGGACCTCATAATCCGTAAAACATTCAT
64 CACATAGTCATCAGACCACATAATCCGTAAAACATTCAT
* * * *
10301672 ATGCTCACGATGACACATAGTCATCGGACC-TCATCTGTAAAGGATTCATACACTCACGATGACA
1 ATACTCACGATGACACATAGTCATCGGACCTTAATCCGTAAAGGATTCATATACTCACGATGACA
**
10301736 CATAGTCATCAGACCACATAATCCGTAAAGGATTCAT
66 CATAGTCATCAGACCACATAATCCGTAAAACATTCAT
* * * * * *
10301773 ATACTCACGATGACACATATTCATTGCATCTCATAATCCGTAAAAGATTCATATTCTCACGATGA
1 ATACTCACGATGACACATAGTCATCGGA-C-CTTAATCCGTAAAGGATTCATATACTCACGATGA
10301838 CACATAGTCATCAGACC
64 CACATAGTCATCAGACC
10301855 TATTTCATTT
Statistics
Matches: 157, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
101 77 0.49
102 8 0.05
103 1 0.01
104 71 0.45
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (102 bp):
ATACTCACGATGACACATAGTCATCGGACCTTAATCCGTAAAGGATTCATATACTCACGATGACA
CATAGTCATCAGACCACATAATCCGTAAAACATTCAT
Found at i:10301848 original size:153 final size:153
Alignment explanation
Indices: 10301570--10301855 Score: 430
Period size: 153 Copynumber: 1.9 Consensus size: 153
10301560 AATATTTGAT
** ** *
10301570 ACTCACGATGACACAGAGTCATCAGACCTTTAATCCGTATTGGGAATCATATACTCACGGTGACA
1 ACTCACGATGACACAGAGTCATCAGACCCATAATCCGTATAAGGAATCATATACTCACGATGACA
* *
10301635 CATAGTCATCGGACCTCATAATCCGTAAAACATTCATATGCTCACGATGACACATAGTCATCGGA
66 CATAGTCATCGCACCTCATAATCCGTAAAACATTCATATGCTCACGATGACACATAGTCATCAGA
10301700 CCTCATCTGTAAAGGATTCATAC
131 CCTCATCTGTAAAGGATTCATAC
* *
10301723 ACTCACGATGACACATAGTCATCAGACCACATAATCCGTA-AAGGATTCATATACTCACGATGAC
1 ACTCACGATGACACAGAGTCATCAGACC-CATAATCCGTATAAGGAATCATATACTCACGATGAC
* * * * *
10301787 ACATATTCATTGCATCTCATAATCCGTAAAAGATTCATATTCTCACGATGACACATAGTCATCAG
65 ACATAGTCATCGCACCTCATAATCCGTAAAACATTCATATGCTCACGATGACACATAGTCATCAG
10301852 ACCT
130 ACCT
10301856 ATTTCATTTA
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
153 109 0.92
154 9 0.08
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (153 bp):
ACTCACGATGACACAGAGTCATCAGACCCATAATCCGTATAAGGAATCATATACTCACGATGACA
CATAGTCATCGCACCTCATAATCCGTAAAACATTCATATGCTCACGATGACACATAGTCATCAGA
CCTCATCTGTAAAGGATTCATAC
Found at i:10306136 original size:55 final size:55
Alignment explanation
Indices: 10306062--10306193 Score: 174
Period size: 55 Copynumber: 2.4 Consensus size: 55
10306052 ATTTGGATTG
* * * * * *
10306062 AATCGATTGTTATGATGGAATATTGCTTCATTTGAATTAATTGTTTTTATGTTTA
1 AATCAATTGTCATGTTGGAATATTGATTCATTTGAATTAATTGTTTATATATTTA
* *
10306117 AATCAATTGTCATGTTGGAATATTGATTCTTTTGAATTGATTGTTTATATATTTA
1 AATCAATTGTCATGTTGGAATATTGATTCATTTGAATTAATTGTTTATATATTTA
* *
10306172 AATCAATTGTCATATTGAAATA
1 AATCAATTGTCATGTTGGAATA
10306194 CTTTTACGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 67 1.00
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.48
Consensus pattern (55 bp):
AATCAATTGTCATGTTGGAATATTGATTCATTTGAATTAATTGTTTATATATTTA
Found at i:10308151 original size:11 final size:11
Alignment explanation
Indices: 10308135--10308240 Score: 56
Period size: 11 Copynumber: 9.3 Consensus size: 11
10308125 TATAAACGGC
10308135 ATAAAAAATAA
1 ATAAAAAATAA
*
10308146 ATAAAAAACATA
1 ATAAAAAATA-A
*
10308158 A-AAACAATAA
1 ATAAAAAATAA
10308168 ATAAATAAGATTAA
1 ATAAA-AA-A-TAA
* *
10308182 ATAAAGGCAA-GA
1 ATAAA--AAATAA
*
10308194 AT-ATAAATAA
1 ATAAAAAATAA
*
10308204 CATAAAAAATTA
1 -ATAAAAAATAA
*
10308216 ATAACAAATAA
1 ATAAAAAATAA
*
10308227 ATAAAAATTAA
1 ATAAAAAATAA
10308238 ATA
1 ATA
10308241 CTAAATAATA
Statistics
Matches: 70, Mismatches: 16, Indels: 18
0.67 0.15 0.17
Matches are distributed among these distances:
9 2 0.03
10 3 0.04
11 42 0.60
12 12 0.17
13 1 0.01
14 9 0.13
15 1 0.01
ACGTcount: A:0.71, C:0.05, G:0.04, T:0.21
Consensus pattern (11 bp):
ATAAAAAATAA
Found at i:10308240 original size:22 final size:22
Alignment explanation
Indices: 10308193--10308253 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
10308183 TAAAGGCAAG
10308193 AATA-TAAATAACATAAAAAATT
1 AATACTAAATAACAT-AAAAATT
10308215 AATAAC-AAATAA-ATAAAAATT
1 AAT-ACTAAATAACATAAAAATT
*
10308236 AAATACTAAATAATATAA
1 -AATACTAAATAACATAA
10308254 TATAAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 9 0.26
22 14 0.41
23 11 0.32
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (22 bp):
AATACTAAATAACATAAAAATT
Found at i:10308266 original size:21 final size:19
Alignment explanation
Indices: 10308216--10308267 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
10308206 TAAAAAATTA
*
10308216 ATAACAAATAAATAAAAAT
1 ATAAAAAATAAATAAAAAT
* *
10308235 -TAAATACTAAATAATATAAT
1 ATAAAAAATAAATAA-A-AAT
10308255 ATAAAAAATAAAT
1 ATAAAAAATAAAT
10308268 GGGACCAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
18 11 0.44
19 1 0.04
20 3 0.12
21 10 0.40
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAAAAAATAAATAAAAAT
Found at i:10317245 original size:25 final size:26
Alignment explanation
Indices: 10317203--10317252 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
10317193 AGATAGCCTA
*
10317203 TCTGGGCTCGTATAAGCT-AATTTTG
1 TCTGGGCTCCTATAAGCTAAATTTTG
*
10317228 TCTGGGCTCCTATGAGCTAAATTTT
1 TCTGGGCTCCTATAAGCTAAATTTT
10317253 TGGAAGACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (26 bp):
TCTGGGCTCCTATAAGCTAAATTTTG
Found at i:10318217 original size:29 final size:28
Alignment explanation
Indices: 10318166--10318276 Score: 89
Period size: 29 Copynumber: 3.9 Consensus size: 28
10318156 CAATCTAGAT
* *
10318166 TAGTTGGGTGACTAAATTAAAAAATTTGA
1 TAGTTGGGTGACCAAA-TAAAAAAATTGA
***
10318195 TAGTTGGGTGACCAAA-AAGAAAAAGACAA
1 TAGTTGGGTGACCAAATAA-AAAAA-TTGA
*
10318224 TAGTTAGGTGACCAAATTAAAAAAATTGA
1 TAGTTGGGTGACCAAA-TAAAAAAATTGA
* * * *
10318253 TAATCGGGTGGCCAAAAAAAAAAA
1 TAGTTGGGTGACCAAATAAAAAAA
10318277 GGCAATAGTT
Statistics
Matches: 64, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
27 2 0.03
28 11 0.17
29 44 0.69
30 5 0.08
31 2 0.03
ACGTcount: A:0.49, C:0.08, G:0.21, T:0.23
Consensus pattern (28 bp):
TAGTTGGGTGACCAAATAAAAAAATTGA
Found at i:10318241 original size:58 final size:58
Alignment explanation
Indices: 10318166--10318293 Score: 177
Period size: 58 Copynumber: 2.2 Consensus size: 58
10318156 CAATCTAGAT
* * * * * *
10318166 TAGTTGGGTGACTAAATTAAAAAATTTGATAGTTGGGTGACCAAAAAGAAAAAGACAA
1 TAGTTAGGTGACCAAATTAAAAAAATTGATAATCGGGTGACCAAAAAAAAAAAGACAA
* *
10318224 TAGTTAGGTGACCAAATTAAAAAAATTGATAATCGGGTGGCCAAAAAAAAAAAGGCAA
1 TAGTTAGGTGACCAAATTAAAAAAATTGATAATCGGGTGACCAAAAAAAAAAAGACAA
10318282 TAGTTA-GTGACC
1 TAGTTAGGTGACC
10318294 TTTAATGTAG
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
57 6 0.10
58 56 0.90
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (58 bp):
TAGTTAGGTGACCAAATTAAAAAAATTGATAATCGGGTGACCAAAAAAAAAAAGACAA
Found at i:10321597 original size:13 final size:14
Alignment explanation
Indices: 10321574--10321603 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
10321564 TTTTGGGCAG
10321574 TTTCACTTTTTTTT
1 TTTCACTTTTTTTT
10321588 TTTC-CTTTTTTTT
1 TTTCACTTTTTTTT
10321601 TTT
1 TTT
10321604 TTAGTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTCACTTTTTTTT
Found at i:10325132 original size:22 final size:22
Alignment explanation
Indices: 10325106--10325151 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
10325096 TAAATTGTAA
10325106 TAAA-TAAAAAAATATTAAATAT
1 TAAATTAAAAAAAT-TTAAATAT
*
10325128 TAAATTTAAAATAATTTAAATAT
1 TAAA-TTAAAAAAATTTAAATAT
10325151 T
1 T
10325152 TTTTTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 4 0.19
23 9 0.43
24 8 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
TAAATTAAAAAAATTTAAATAT
Found at i:10325146 original size:23 final size:23
Alignment explanation
Indices: 10325110--10325166 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
10325100 TTGTAATAAA
*
10325110 TAAAAAAATATTAAATATTAAATT
1 TAAAATAATATTAAATATT-AATT
**
10325134 TAAAATAAT-TTAAATATTTTTT
1 TAAAATAATATTAAATATTAATT
10325156 TAAAATAATAT
1 TAAAATAATAT
10325167 GAGCACACAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.38
23 10 0.34
24 8 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
TAAAATAATATTAAATATTAATT
Found at i:10329011 original size:7 final size:7
Alignment explanation
Indices: 10328994--10329025 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
10328984 ACAAAACGTC
10328994 TTTTA-T
1 TTTTATT
10329000 TTTTATT
1 TTTTATT
10329007 TTTTATT
1 TTTTATT
10329014 TTTTATT
1 TTTTATT
10329021 TTTTA
1 TTTTA
10329026 AAACATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTATT
Found at i:10330217 original size:30 final size:30
Alignment explanation
Indices: 10330177--10330718 Score: 454
Period size: 30 Copynumber: 18.2 Consensus size: 30
10330167 AGGAGGTCCC
* * * *
10330177 CAAATTTTTTAAAAATAACATTTTGACCCT
1 CAAACTTTCTAAAAATCACATTTTAACCCT
*
10330207 CAAACTTTTTAAAAATCACATTTTAACCCT
1 CAAACTTTCTAAAAATCACATTTTAACCCT
*
10330237 CAAACTTTCCAAAAATCACATTTTAACACC-
1 CAAACTTTCTAAAAATCACATTTTAAC-CCT
* * *
10330267 CAAACTTCCCAAAAATCACATTTTAACCCC
1 CAAACTTTCTAAAAATCACATTTTAACCCT
10330297 CAAACCTTTCT-AAAATCACATTTTAACCCT
1 CAAA-CTTTCTAAAAATCACATTTTAACCCT
* * * *
10330327 AAAACTTTTTAAAAATCATATTTTGACCCT
1 CAAACTTTCTAAAAATCACATTTTAACCCT
* * *
10330357 AAAACTTTTTAAAAATCATATTTTAACCC-
1 CAAACTTTCTAAAAATCACATTTTAACCCT
* *
10330386 CTAAACTTTTTAAAAATCACATTTTGACCCT
1 C-AAACTTTCTAAAAATCACATTTTAACCCT
* * * *
10330417 CGAAC-TTCCAAAAAT-TCATTTTGA-CCT
1 CAAACTTTCTAAAAATCACATTTTAACCCT
* *
10330444 CTAAACTTTCCAAAAAATCACATTCTAACCCT
1 C-AAACTTT-CTAAAAATCACATTTTAACCCT
* *
10330476 TAAATCTTTCT-AAAATCATATTTTAA-CCT
1 CAAA-CTTTCTAAAAATCACATTTTAACCCT
10330505 CAAAACTTTTCT-AAAATCACATTTTAACCCT
1 C-AAAC-TTTCTAAAAATCACATTTTAACCCT
* * *
10330536 TAAACTTTTCT-AAAATCATATTTTCACCCT
1 CAAAC-TTTCTAAAAATCACATTTTAACCCT
* *
10330566 CAAAC-TTCTTCAAAATCACATTTTGACCAC-
1 CAAACTTTC-TAAAAATCACATTTTAACC-CT
*
10330596 CAAACCTTCCT-AAAATCACATTTTAA-CCT
1 CAAA-CTTTCTAAAAATCACATTTTAACCCT
* * *
10330625 TAAACTTCTCT-AAAATCACCTTTTGACCCT
1 CAAACTT-TCTAAAAATCACATTTTAACCCT
** * *
10330655 -AAACTTTCCCAAAATTACATTTTTACCCT
1 CAAACTTTCTAAAAATCACATTTTAACCCT
* * *
10330684 TAAACTTT-TATAAAATTATATTTTAACCC-
1 CAAACTTTCTA-AAAATCACATTTTAACCCT
10330713 CAAACT
1 CAAACT
10330719 CTCCGAAACT
Statistics
Matches: 433, Mismatches: 53, Indels: 53
0.80 0.10 0.10
Matches are distributed among these distances:
27 4 0.01
28 20 0.05
29 68 0.16
30 309 0.71
31 23 0.05
32 9 0.02
ACGTcount: A:0.38, C:0.25, G:0.01, T:0.35
Consensus pattern (30 bp):
CAAACTTTCTAAAAATCACATTTTAACCCT
Found at i:10349346 original size:15 final size:16
Alignment explanation
Indices: 10349314--10349346 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10349304 ATATTTATTT
*
10349314 TTTTAATATTATAATA
1 TTTTAATATTAAAATA
10349330 TTTTAATA-TAAAATA
1 TTTTAATATTAAAATA
10349345 TT
1 TT
10349347 AAAAATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTTAATATTAAAATA
Found at i:10351038 original size:24 final size:24
Alignment explanation
Indices: 10350986--10351073 Score: 90
Period size: 24 Copynumber: 3.7 Consensus size: 24
10350976 ATATGATAGA
*
10350986 CAGAT-CAGTTACAGATACAAA-T
1 CAGATACAGATACAGATACAAATT
* * * *
10351008 GATGATACATATGCAGATACAAGTT
1 CA-GATACAGATACAGATACAAATT
*
10351033 CAGATACAGATACAGATGCAAATT
1 CAGATACAGATACAGATACAAATT
*
10351057 CAGATGCAGATACAGAT
1 CAGATACAGATACAGAT
10351074 CCTACCCCAT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
22 1 0.02
23 3 0.06
24 46 0.88
25 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (24 bp):
CAGATACAGATACAGATACAAATT
Found at i:10351064 original size:12 final size:12
Alignment explanation
Indices: 10350997--10351061 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
10350987 AGATCAGTTA
10350997 CAGATACAAA-T
1 CAGATACAAATT
* * *
10351008 GATGATACATATG
1 CA-GATACAAATT
*
10351021 CAGATACAAGTT
1 CAGATACAAATT
* *
10351033 CAGATACAGATA
1 CAGATACAAATT
*
10351045 CAGATGCAAATT
1 CAGATACAAATT
10351057 CAGAT
1 CAGAT
10351062 GCAGATACAG
Statistics
Matches: 39, Mismatches: 13, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
11 1 0.03
12 37 0.95
13 1 0.03
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (12 bp):
CAGATACAAATT
Found at i:10351072 original size:12 final size:12
Alignment explanation
Indices: 10351033--10351073 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
10351023 GATACAAGTT
*
10351033 CAGATACAGATA
1 CAGATGCAGATA
* *
10351045 CAGATGCAAATT
1 CAGATGCAGATA
10351057 CAGATGCAGATA
1 CAGATGCAGATA
10351069 CAGAT
1 CAGAT
10351074 CCTACCCCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.20
Consensus pattern (12 bp):
CAGATGCAGATA
Found at i:10352629 original size:35 final size:34
Alignment explanation
Indices: 10352580--10352674 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 34
10352570 ATATTCTGAT
*
10352580 ATTTTGAATTGCATGTTAAGCATGCAATTAATCTG
1 ATTTTGAATCGCATGTTAAGCATGC-ATTAATCTG
* * * * *
10352615 GTTTTGACTCGCATGTTAAGCATGGCATTATTTTT
1 ATTTTGAATCGCATGTTAAGCAT-GCATTAATCTG
*
10352650 ATTTTGATTCGCATGTTAAGCATGC
1 ATTTTGAATCGCATGTTAAGCATGC
10352675 CACTGTGATA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
34 2 0.04
35 47 0.92
36 2 0.04
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (34 bp):
ATTTTGAATCGCATGTTAAGCATGCATTAATCTG
Found at i:10353474 original size:21 final size:22
Alignment explanation
Indices: 10353448--10353502 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
10353438 AGGTTAATCC
10353448 AACTCAACTA-TAGTGCTTTC-A
1 AACTCAACTACTA-TGCTTTCAA
*
10353469 AACTCAA-TACTATGTTTTCAA
1 AACTCAACTACTATGCTTTCAA
10353490 AACTCAAC-ACTAT
1 AACTCAACTACTAT
10353503 TTGCTCATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 8 0.27
21 22 0.73
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (22 bp):
AACTCAACTACTATGCTTTCAA
Found at i:10359344 original size:24 final size:24
Alignment explanation
Indices: 10359293--10359356 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
10359283 AACAAGCTCG
* *
10359293 TTTAAAAGCTCATTTATTGACTCC
1 TTTATAAGCTCATTTATTGACTCA
* * *
10359317 TTTATAAGCTCGTTTATTGATTTA
1 TTTATAAGCTCATTTATTGACTCA
*
10359341 TTTATGA-CTCATTTAT
1 TTTATAAGCTCATTTAT
10359357 GTATTAATGA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
23 8 0.24
24 25 0.76
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.50
Consensus pattern (24 bp):
TTTATAAGCTCATTTATTGACTCA
Found at i:10361008 original size:17 final size:18
Alignment explanation
Indices: 10360986--10361026 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
10360976 TATCCTTTAC
10360986 ACTTTTTTTTT-TGTTTT
1 ACTTTTTTTTTATGTTTT
*
10361003 ACTTTTTTTTTATTTTTT
1 ACTTTTTTTTTATGTTTT
10361021 A-TTTTT
1 ACTTTTT
10361027 AAAAGTAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (18 bp):
ACTTTTTTTTTATGTTTT
Found at i:10363489 original size:13 final size:13
Alignment explanation
Indices: 10363471--10363500 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10363461 TGAATTTAAG
10363471 ATTTAATCTATAT
1 ATTTAATCTATAT
*
10363484 ATTTAATCTTTAT
1 ATTTAATCTATAT
10363497 ATTT
1 ATTT
10363501 TCTTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTAATCTATAT
Found at i:10364013 original size:29 final size:27
Alignment explanation
Indices: 10363957--10364026 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 27
10363947 TTAAATTTTG
10363957 AAAAAATGA-AAAGATTAAATTCCTAGAA
1 AAAAAAT-ATAAAGATTAAATTCCTAG-A
*
10363985 ATAAAAATATAAAGATTAAATT-TTAAGA
1 A-AAAAATATAAAGATTAAATTCCT-AGA
*
10364013 AAAAATTATAAAGA
1 AAAAAATATAAAGA
10364027 AATTTGGAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
27 12 0.32
28 5 0.14
29 20 0.54
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.26
Consensus pattern (27 bp):
AAAAAATATAAAGATTAAATTCCTAGA
Found at i:10364832 original size:71 final size:72
Alignment explanation
Indices: 10364709--10364876 Score: 173
Period size: 72 Copynumber: 2.3 Consensus size: 72
10364699 AAATTAAAAA
* ** * *
10364709 AAAAAACTTAAATTAAATTATTAATTTTTTGGGAGAAATTAAAAATGCA-TTTTTAATTTAACTA
1 AAAAGACTTAAATTAAATTATTAATTTTTTGAAAGAAATTAAAAATGAATTTTTTAATTTAAAT-
10364773 AAAGC-TG
65 AAAGCATG
* * * *
10364780 AAATGACTTAAATTAAATTATTAATTTTTT-AAATAAA-TATAATATGTAATTTTTTCATTTAAA
1 AAAAGACTTAAATTAAATTATTAATTTTTTGAAAGAAATTA-AAAATG-AATTTTTTAATTTAAA
*
10364843 TAAAGCATT
64 TAAAGCATG
**
10364852 AAAAGGTTTAAATTAAATTATTAAT
1 AAAAGACTTAAATTAAATTATTAAT
10364877 AAAAGACCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
69 2 0.03
70 9 0.11
71 34 0.43
72 35 0.44
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (72 bp):
AAAAGACTTAAATTAAATTATTAATTTTTTGAAAGAAATTAAAAATGAATTTTTTAATTTAAATA
AAGCATG
Found at i:10365743 original size:20 final size:21
Alignment explanation
Indices: 10365704--10365743 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
10365694 AATACACAAA
* *
10365704 TTTTCAAATCTTTTATTGAAC
1 TTTTAAAATCTTTAATTGAAC
10365725 TTTTAAAAT-TTTAATTGAA
1 TTTTAAAATCTTTAATTGAA
10365744 AAAGTTTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTTAAAATCTTTAATTGAAC
Found at i:10366965 original size:6 final size:6
Alignment explanation
Indices: 10366954--10366988 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
10366944 GAAATAACAA
*
10366954 AAAAAG AAAAAG AAAAAG AAAAAG AAGAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAA
10366989 TGAAGATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:10375045 original size:116 final size:116
Alignment explanation
Indices: 10374825--10375088 Score: 375
Period size: 116 Copynumber: 2.3 Consensus size: 116
10374815 AGCTAAGAAG
* * * * **
10374825 TCCTACCCTGCAACTTCTACCGATATAAGTATTTAAGCTACCGATACCTCAATGTACAGAACTAC
1 TCCTACCCTG-TACTTCTACCGATACAAGCATTTAAACTACCGATACCTCAACATACAGAACTAC
* * *
10374890 CGATGCTTGTTATACAATTACCGAAACAACTCAAGTCAGAGAAAAACCTCTC
65 CGATACATGTTATACAACTACCGAAACAACTCAAGTCAGAGAAAAACCTCTC
* * * * *
10374942 TCCTACCCTGTACTGCTACCAATACAAGCATTTAAACTACTGATACCTCAACATATAGAACTATC
1 TCCTACCCTGTACTTCTACCGATACAAGCATTTAAACTACCGATACCTCAACATACAGAACTACC
* *
10375007 GATACATGTTATACAACTACCGAAACAACTCAAGTCAGAGAACAATCTCTC
66 GATACATGTTATACAACTACCGAAACAACTCAAGTCAGAGAAAAACCTCTC
10375058 TCCTACCCTGTACTTCTACCGATACAAGCAT
1 TCCTACCCTGTACTTCTACCGATACAAGCAT
10375089 GAGTTCTGCT
Statistics
Matches: 129, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
116 119 0.92
117 10 0.08
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (116 bp):
TCCTACCCTGTACTTCTACCGATACAAGCATTTAAACTACCGATACCTCAACATACAGAACTACC
GATACATGTTATACAACTACCGAAACAACTCAAGTCAGAGAAAAACCTCTC
Found at i:10380289 original size:21 final size:21
Alignment explanation
Indices: 10380265--10380322 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
10380255 TTTTACCGAT
* *
10380265 ACAAGTGTCAGTTCTATCAAA
1 ACAAGTCTCACTTCTATCAAA
* *
10380286 ACAAGTCTCACTTCTATCGAT
1 ACAAGTCTCACTTCTATCAAA
* *
10380307 ACAAGTTTTACTTCTA
1 ACAAGTCTCACTTCTA
10380323 CCGACACCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (21 bp):
ACAAGTCTCACTTCTATCAAA
Done.