Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 42 of 163
Found at i:10731373 original size:6 final size:6
Alignment explanation
Indices: 10731301--10731355 Score: 62
Period size: 6 Copynumber: 9.7 Consensus size: 6
10731291 TATTTTAACC
* * *
10731301 TTAAAT TT-ACT TTAAA- TTCAAT TTAAAT TTAAAT TTGAAT TT-AAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
10731346 TTAAAT TTAA
1 TTAAAT TTAA
10731356 TGTTATTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
5 13 0.32
6 28 0.68
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (6 bp):
TTAAAT
Found at i:10732010 original size:17 final size:17
Alignment explanation
Indices: 10731990--10732022 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10731980 TGTTCCTAAT
*
10731990 ATATTAATATTAATAAC
1 ATATTAATAATAATAAC
10732007 ATATTAATAATAATAA
1 ATATTAATAATAATAA
10732023 TAACATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
ATATTAATAATAATAAC
Found at i:10733072 original size:30 final size:30
Alignment explanation
Indices: 10733022--10733421 Score: 577
Period size: 30 Copynumber: 13.6 Consensus size: 30
10733012 AACAATCTAG
*
10733022 AAATTATATTTTGA-CCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
10733051 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733081 AAATTATATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733111 AAATTAAATTTTGA-CCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733140 AAATT--A---TAACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
* * *
10733165 AAATTATACTTTGACCCCAAAGCTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
10733195 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733225 AAATTATATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
* * *
10733255 AAATTATATTTTGACCTCAAAACTTTTCTA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733285 AAATTACATTTTGACCCCGAAACTTTTCCA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
10733315 AAATTACATTTTGACCCCAAAA-TTTCTCCA
1 AAATTACATTTTGACCCCAAAACTTT-TCCA
* *
10733345 AAATTATATTTTGACCCCAAAACTTTTCTA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
*
10733375 AAATTACATTTTGACCCCAAAAC-TTTCAA
1 AAATTACATTTTGACCCCAAAACTTTTCCA
10733404 AAATTACCATTTT-ACCCC
1 AAATTA-CATTTTGACCCC
10733422 CCAAATCTTC
Statistics
Matches: 340, Mismatches: 21, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
24 2 0.01
25 20 0.06
27 2 0.01
29 52 0.15
30 261 0.77
31 3 0.01
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (30 bp):
AAATTACATTTTGACCCCAAAACTTTTCCA
Found at i:10733494 original size:29 final size:29
Alignment explanation
Indices: 10733280--10733503 Score: 122
Period size: 30 Copynumber: 7.6 Consensus size: 29
10733270 CTCAAAACTT
* *
10733280 TTCTAAAATTA-CATTTTGACCCCGAAACTT
1 TTCTAAAATTACCATTTT-ACCCCCAAA-TC
* *
10733310 TTCCAAAATTA-CATTTTGACCCCAAAAT-
1 TTCTAAAATTACCATTTT-ACCCCCAAATC
* * *
10733338 TTCTCCAAAATTA-TATTTTGACCCCAAAACTT
1 TTCT--AAAATTACCATTTT-ACCCCCAAA-TC
*
10733370 TTCTAAAATTA-CATTTTGA-CCCCAAAAC
1 TTCTAAAATTACCATTTT-ACCCCCAAATC
*
10733398 TTTCAAAAATTACCATTTTACCCCCCAAATC
1 -TTCTAAAATTACCATTTTA-CCCCCAAATC
* * * **
10733429 TTCTAAAATT-CCGTTTTAACCTCGATTTC
1 TTCTAAAATTACCATTTT-ACCCCCAAATC
** * *
10733458 ACCAAAAATTACCATTTTACCCCCGAATC
1 TTCTAAAATTACCATTTTACCCCCAAATC
*
10733487 TTTTAAAATT-CCATTTT
1 TTCTAAAATTACCATTTT
10733504 TTAACCCCGA
Statistics
Matches: 155, Mismatches: 29, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
28 10 0.06
29 49 0.32
30 83 0.54
31 9 0.06
32 4 0.03
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (29 bp):
TTCTAAAATTACCATTTTACCCCCAAATC
Found at i:10733525 original size:59 final size:58
Alignment explanation
Indices: 10733401--10733541 Score: 194
Period size: 59 Copynumber: 2.4 Consensus size: 58
10733391 CCAAAACTTT
* * *
10733401 CAAAAATTACCATTTTACCCCCCAAATCTTCTAAAATTCCGTTTTAACCTCGATTTCAC
1 CAAAAATTACCATTTTA-CCCCCGAATCTTCTAAAATTCCGTTTTAACCCCGATTACAC
* *
10733460 CAAAAATTACCATTTTACCCCCGAATCTTTTAAAATTCCATTTTTTAACCCCGATTACAC
1 CAAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCC--GTTTTAACCCCGATTACAC
*
10733520 C-AAAATTACCATTTTGCCCCCG
1 CAAAAATTACCATTTTACCCCCG
10733542 GGTATCCATA
Statistics
Matches: 74, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
58 20 0.27
59 37 0.50
60 17 0.23
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.33
Consensus pattern (58 bp):
CAAAAATTACCATTTTACCCCCGAATCTTCTAAAATTCCGTTTTAACCCCGATTACAC
Found at i:10745494 original size:38 final size:38
Alignment explanation
Indices: 10745445--10746703 Score: 989
Period size: 38 Copynumber: 35.6 Consensus size: 38
10745435 AAGAGCAACG
10745445 TCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCAT-CCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10745484 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
** *
10745522 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACAACG
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * *
10745560 TCATCCCTTGAAATTGAAGTAGAGTGGATAACTCATCC
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * **
10745598 TCGTCTC-TGAAATTGAAGTA-A---GAGCA-ACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
*
10745627 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCT
1 TCATCC-CTTGAAATTGAAGTAGAG-TGGATAACACGTCT
* * ** *
10745667 TGATCTC-TGAAATTGAAGTA-A---GAGCA-ACGTCA
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * *
10745699 TC--CCCTTGAAACTGAAGTAGAGTGGGTAATACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * **
10745735 TGATCTC-TGAAATTGAAGTA-A---GAGCA-ACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
*
10745764 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCT
1 TCATCC-CTTGAAATTGAAGTAGAG-TGGATAACACGTCT
* ** *
10745804 TCATCTC-TGAAATTGAAGTA-A---GAGCA-ACGTCA
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10745836 TC--CCCTTGAAATTGAAGTAGAGTGGATAACACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10745869 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* **
10745907 TCATCTC-TGAAATTGAAGTA-A---GA-GCCACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
10745936 TCATCCCCTGAAATTGAAGTAGAGTGGATAAAACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10745974 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746012 TCAT-CCTTGAAA-TGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * *
10746048 TCATCCCTTGAAATTGAAGTAGAGTGGATAACTCATCC
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * **
10746086 TCGTCTC-TGAAATTGAAGTA-A---GAGCA-ACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
10746115 TCATCCTCTTGAAATTGAAGTAGAGTGGATAAAAGAGTCT
1 TCATCC-CTTGAAATTGAAGTAGAGTGGATAACA-CGTCT
* * *
10746155 TGATCTC-TGAAATTGAAGTA-AG-AG-T-A-ACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * *
10746184 TCATCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * **
10746222 TGATCTC-TGAAATTGAAGTA-A---GAGCA-ACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
*
10746251 TCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCT
1 TCATCC-CTTGAAATTGAAGTAGAG-TGGATAACACGTCT
* ** *
10746291 TCATCTC-TGAAATTGAAGTA-A---GAGCA-ACGTCA
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746323 TC--CCCTTGAAATTGAAGTAGAGTGGATAACACG---
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746356 TCATCCCTTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCC-TTGAAATTGAAGTAGAGTGGATAACACGTCT
* ** *
10746395 TCATCTC-TGAAATTGAAGTA-A---GAGCA-ACGTCA
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746427 TC--CCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746463 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
10746501 TCATCCCTTGAAATTG-AGTAGAGTGGATAACACGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
** *
10746538 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACAACG
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
10746576 TCATCCCCTTGAAATTGAAGTAGAGTGGATAA-ATCATCC
1 TCAT-CCCTTGAAATTGAAGTAGAGTGGATAACA-CGTCT
* * ** *
10746615 TCGTCTC-TGAAATTGAAGTA-A---GAGCA-ACGTCA
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* * * *
10746647 TCCT-CTTTGAAATTGAAGTAGAGTTGATAACAAGTCT
1 TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
* *
10746684 TAATCTC-TGAAATTGAAGTA
1 TCATCCCTTGAAATTGAAGTA
10746704 AGAGCAACGT
Statistics
Matches: 978, Mismatches: 129, Indels: 228
0.73 0.10 0.17
Matches are distributed among these distances:
29 27 0.03
30 37 0.04
31 106 0.11
32 65 0.07
33 35 0.04
34 4 0.00
35 55 0.06
36 96 0.10
37 173 0.18
38 315 0.32
39 47 0.05
40 18 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (38 bp):
TCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCT
Found at i:10745680 original size:69 final size:68
Alignment explanation
Indices: 10745555--10746353 Score: 839
Period size: 69 Copynumber: 11.6 Consensus size: 68
10745545 GTGGATAACA
* *
10745555 CAACGTCATCC-CTTGAAATTGAAGTAGAGTGGATAACTCA-TCCTCG-TCTCTGAAATTGAAGT
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAAC-AAGT-CTTGATCTCTGAAATTGAAGT
10745617 AAGAG
64 AAGAG
10745622 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTGATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTGATCTCTGAAATTGAAGTA
10745687 AGAG
65 AGAG
* * * * *
10745691 CAACGTCATCCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTGATCTCTGAAATTGAAGTAA
10745756 GAG
66 GAG
*
10745759 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTGATCTCTGAAATTGAAGTA
10745824 AGAG
65 AGAG
* * *
10745828 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTC---ATCCCTTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTGATCTC-TGAAATTGAAGTA
*
10745890 GAGTGGAT
65 -A---GAG
* * * ** * *
10745898 AACACGTCTTCATCTCTGAAATTGAAGTA-A---GA-GCCACGTC---ATCCCCTGAAATTGAAG
1 CA-ACGTCATCCTCT-TGAAATTGAAGTAGAGTGGATAACAAGTCTTGAT-CTCTGAAATTGAAG
*
10745955 TAGAGTGGATA
63 TA-A---GA-G
* * *
10745966 AAACGTCTTCATCC-CTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATC-CTTGAAA-TGAA
1 CAACG---TCATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTGATCTC-TGAAATTGAA
*
10746028 GTAGAGTGGAT
62 GTA-A---GAG
* * *
10746039 AACACGTCTTCATCC-CTTGAAATTGAAGTAGAGTGGATAACTCA-TCCTCG-TCTCTGAAATTG
1 CA-ACG---TCATCCTCTTGAAATTGAAGTAGAGTGGATAAC-AAGT-CTTGATCTCTGAAATTG
10746101 AAGTAAGAG
60 AAGTAAGAG
*
10746110 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAAAAGAGTCTTGATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACA-AGTCTTGATCTCTGAAATTGAAGTA
10746175 AGAG
65 AGAG
* * * * *
10746179 TAACGTCATCC-CTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTGATCTCTGAAATTGAAGTAA
10746243 GAG
66 GAG
*
10746246 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTGATCTCTGAAATTGAAGTA
10746311 AGAG
65 AGAG
*
10746315 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACA
1 CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACA
10746354 CGTCATCCCT
Statistics
Matches: 645, Mismatches: 50, Indels: 73
0.84 0.07 0.10
Matches are distributed among these distances:
65 4 0.01
66 13 0.02
67 87 0.13
68 196 0.30
69 219 0.34
70 10 0.02
71 13 0.02
72 15 0.02
73 8 0.01
74 62 0.10
75 16 0.02
76 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (68 bp):
CAACGTCATCCTCTTGAAATTGAAGTAGAGTGGATAACAAGTCTTGATCTCTGAAATTGAAGTAA
GAG
Found at i:10746394 original size:488 final size:491
Alignment explanation
Indices: 10745435--10746569 Score: 2147
Period size: 488 Copynumber: 2.3 Consensus size: 491
10745425 CATTTTCTGC
10745435 AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
1 AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
** *
10745500 AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGAGTGGATAACACAACGTCATC
66 AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATC
10745565 CCTTGAAATTGAAGTAGAGTGGATAACTCATCCTCGTCTCTGAAATTGAAGTAAGAGCAACGTCA
131 CCTTGAAATTGAAGTAGAGTGGATAACTCATCCTCGTCTCTGAAATTGAAGTAAGAGCAACGTCA
*
10745630 TCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTGATCTCTGAAATTGAAGTAAGAGCAAC
196 TCCTCTTGAAATTGAAGTAGAGTTGGATAAAAAGTCTTGATCTCTGAAATTGAAGTAAGAGCAAC
10745695 GTCATCCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAAGAGC
261 GTCATCCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAAGAGC
10745760 AACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAA
326 AACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAA
10745825 GAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCATCCCTTGAAATTGAAGTA
391 GAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCATCCCTTGAAATTGAAGTA
10745890 GAGTGGATAACACGTCTTCATCTCTGAAATTGAAGT
456 GAGTGGATAACACGTCTTCATCTCTGAAATTGAAGT
* *
10745926 AAGAGCCACGTCATCCCC-TGAAATTGAAGTAGAGTGGATAAAACGTCTTCATCCCTTGAAATTG
1 AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
10745990 AAGTAGAGTGGATAACACGTCTTCAT-CCTTGAAA-TGAAGTAGAGTGGATAACACGTCTTCATC
66 AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATC
10746053 CCTTGAAATTGAAGTAGAGTGGATAACTCATCCTCGTCTCTGAAATTGAAGTAAGAGCAACGTCA
131 CCTTGAAATTGAAGTAGAGTGGATAACTCATCCTCGTCTCTGAAATTGAAGTAAGAGCAACGTCA
*
10746118 TCCTCTTGAAATTGAAGTAGAG-TGGATAAAAGAGTCTTGATCTCTGAAATTGAAGTAAGAGTAA
196 TCCTCTTGAAATTGAAGTAGAGTTGGATAAAA-AGTCTTGATCTCTGAAATTGAAGTAAGAGCAA
10746182 CGTCAT-CCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAAGAG
260 CGTCATCCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAAGAG
10746246 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTA
325 CAACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTA
10746311 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCATCCCTTTGAAATTGAAG
390 AGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCATCCC-TTGAAATTGAAG
10746376 TAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGT
454 TAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGT
10746414 AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
1 AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
10746479 AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG-AGTAGAGTGGATAACACGTCTTCATC
66 AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATC
10746543 CCTTGAAATTGAAGTAGAGTGGATAAC
131 CCTTGAAATTGAAGTAGAGTGGATAAC
10746570 ACAACGTCAT
Statistics
Matches: 630, Mismatches: 9, Indels: 11
0.97 0.01 0.02
Matches are distributed among these distances:
487 183 0.29
488 217 0.34
489 79 0.13
490 132 0.21
491 19 0.03
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (491 bp):
AAGAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTG
AAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATC
CCTTGAAATTGAAGTAGAGTGGATAACTCATCCTCGTCTCTGAAATTGAAGTAAGAGCAACGTCA
TCCTCTTGAAATTGAAGTAGAGTTGGATAAAAAGTCTTGATCTCTGAAATTGAAGTAAGAGCAAC
GTCATCCCCTTGAAACTGAAGTAGAGTGGGTAATACGTCTTGATCTCTGAAATTGAAGTAAGAGC
AACGTCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTCATCTCTGAAATTGAAGTAA
GAGCAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCATCCCTTGAAATTGAAGTA
GAGTGGATAACACGTCTTCATCTCTGAAATTGAAGT
Found at i:10746436 original size:68 final size:68
Alignment explanation
Indices: 10746353--10746778 Score: 453
Period size: 68 Copynumber: 6.0 Consensus size: 68
10746343 AGTGGATAAC
*
10746353 ACGTCATCCCTTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGA
1 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGA
10746418 GCA
66 GCA
*
10746421 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTAGA
1 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTC-TGAAATTGAAGTA-A
**
10746486 GTGGATAA
64 ---GAGCA
* *
10746494 CACGTCTTCATCCCTTGAAATTG-AGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGT
1 -ACGTCATC--CCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTC-TGAAATTGAAGT
*
10746558 AGAGTGGATAACACA
62 A-A---G---A-GCA
* * *
10746573 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAA-ATCATCCTCGTCTCTGAAATTGAAGTAAG
1 ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACA-CGTCTTCATCTCTGAAATTGAAGTAAG
10746637 AGCA
65 AGCA
* * * *
10746641 ACGTCATCCTCTTTGAAATTGAAGTAGAGTTGATAACAAGTCTTAATCTCTGAAATTGAAGTAAG
1 ACGTCATCC-CCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
10746706 AGCA
65 AGCA
* * * * * * * *
10746710 ACGTCGT-CCCTTTAAATCGAAATAGAGTTGGATAACACGCCTTTATTTCAGAAATTGAAGTAAG
1 ACGTCATCCCCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTCATCTCTGAAATTGAAGTAAG
10746774 AGCA
65 AGCA
10746778 A
1 A
10746779 GATCATTTCC
Statistics
Matches: 310, Mismatches: 31, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
67 15 0.05
68 94 0.30
69 70 0.23
70 2 0.01
72 1 0.00
73 3 0.01
74 7 0.02
75 49 0.16
76 38 0.12
77 22 0.07
78 8 0.03
79 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (68 bp):
ACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCTCTGAAATTGAAGTAAGA
GCA
Found at i:10746529 original size:75 final size:77
Alignment explanation
Indices: 10746419--10746703 Score: 344
Period size: 75 Copynumber: 3.8 Consensus size: 77
10746409 GAAGTAAGAG
10746419 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTA
1 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTA
10746484 GAGTGGATAACA
66 GAGTGGATAACA
** *
10746496 CGTCTTCAT-CCCTTGAAATTG-AGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTA
1 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTA
10746559 GAGTGGATAACA
66 GAGTGGATAACA
* * * *
10746571 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAA-ATCATCCTCGTCTC-TGAAATTGAAGT
1 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACA-CGTCTTCATCCCTTGAAATTGAAGT
*
10746634 A-A---G---A-G
65 AGAGTGGATAACA
* * * * *
10746639 CAACGTCATCCTCTTTGAAATTGAAGTAGAGTTGATAACAAGTCTTAATCTC-TGAAATTGAAGT
1 CAACGTCATCC-CCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGT
10746703 A
65 A
10746704 AGAGCAACGT
Statistics
Matches: 185, Mismatches: 18, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
68 11 0.06
69 45 0.24
70 1 0.01
72 1 0.01
75 61 0.33
76 38 0.21
77 28 0.15
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (77 bp):
CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAACACGTCTTCATCCCTTGAAATTGAAGTA
GAGTGGATAACA
Found at i:10746670 original size:69 final size:69
Alignment explanation
Indices: 10746571--10746778 Score: 230
Period size: 69 Copynumber: 3.0 Consensus size: 69
10746561 GTGGATAACA
* **
10746571 CAACGTCATCCCCTTGAAATTGAAGTAGAGTGGATAAATC-A-TCCTCGTCTCTGAAATTGAAGT
1 CAACGTCATCCCTTTGAAATTGAAGTAGAGTGGATAAA-CAAGTCCTAATCTCTGAAATTGAAGT
10746634 AAGAG
65 AAGAG
* *
10746639 CAACGTCATCCTCTTTGAAATTGAAGTAGAGTTGAT-AACAAGTCTTAATCTCTGAAATTGAAGT
1 CAACGTCATCC-CTTTGAAATTGAAGTAGAGTGGATAAACAAGTCCTAATCTCTGAAATTGAAGT
10746703 AAGAG
65 AAGAG
* * * * * * *
10746708 CAACGTCGTCCCTTT-AAATCGAAATAGAGTTGGAT-AACACG-CCTTTATTTCAGAAATTGAAG
1 CAACGTCATCCCTTTGAAATTGAAGTAGAG-TGGATAAACAAGTCC-TAATCTCTGAAATTGAAG
10746770 TAAGAG
64 TAAGAG
10746776 CAA
1 CAA
10746779 GATCATTTCC
Statistics
Matches: 121, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
67 14 0.12
68 51 0.42
69 56 0.46
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (69 bp):
CAACGTCATCCCTTTGAAATTGAAGTAGAGTGGATAAACAAGTCCTAATCTCTGAAATTGAAGTA
AGAG
Found at i:10747134 original size:6 final size:6
Alignment explanation
Indices: 10747116--10747216 Score: 77
Period size: 6 Copynumber: 17.0 Consensus size: 6
10747106 TTAAATTGAT
* *
10747116 TTTAAA TTT--A TTTAAA TTTAGA TTT-AT TTTAAA TTTAAATA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTT-AA-A TTTAAA
* * * *
10747163 TTT-AA TTTGAA TTTAAA TTTAAA -TAAAA TTAAAA TATTAAA TTAAAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TT-TAAA
10747211 TTTAAA
1 TTTAAA
10747217 AGTCCAAAGT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.05
5 12 0.16
6 43 0.56
7 14 0.18
8 4 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
TTTAAA
Found at i:10747146 original size:17 final size:15
Alignment explanation
Indices: 10747120--10747184 Score: 78
Period size: 17 Copynumber: 4.1 Consensus size: 15
10747110 ATTGATTTTA
10747120 AATTTATTTAAATTT
1 AATTTATTTAAATTT
10747135 AGATTTATTTTAAATTT
1 A-ATTTA-TTTAAATTT
*
10747152 AA-ATATTTAAATTT
1 AATTTATTTAAATTT
10747166 AATTTGAATTTAAATTT
1 AATTT--ATTTAAATTT
10747183 AA
1 AA
10747185 ATAAAATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 11 0.26
15 4 0.09
16 6 0.14
17 22 0.51
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
AATTTATTTAAATTT
Found at i:10747161 original size:41 final size:42
Alignment explanation
Indices: 10747116--10747205 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
10747106 TTAAATTGAT
* ** * *
10747116 TTTAAATTT-ATTTAAATTTAGATTTATTTTAAATTTAAATA
1 TTTAAATTTAATTTAAATTTAAATTTAAATAAAATTAAAATA
*
10747157 TTTAAATTTAATTTGAATTTAAATTTAAATAAAATTAAAATA
1 TTTAAATTTAATTTAAATTTAAATTTAAATAAAATTAAAATA
10747199 -TTAAATT
1 TTTAAATT
10747206 AAAAATTTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 16 0.38
42 26 0.62
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (42 bp):
TTTAAATTTAATTTAAATTTAAATTTAAATAAAATTAAAATA
Found at i:10747162 original size:31 final size:31
Alignment explanation
Indices: 10747124--10747187 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
10747114 ATTTTAAATT
*
10747124 TATTTAAATTTAGATTT-ATTTTAAATTTAAA
1 TATTTAAATTTA-ATTTGAATTTAAATTTAAA
10747155 TATTTAAATTTAATTTGAATTTAAATTTAAA
1 TATTTAAATTTAATTTGAATTTAAATTTAAA
10747186 TA
1 TA
10747188 AAATTAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (31 bp):
TATTTAAATTTAATTTGAATTTAAATTTAAA
Found at i:10747170 original size:11 final size:11
Alignment explanation
Indices: 10747106--10747186 Score: 64
Period size: 11 Copynumber: 7.5 Consensus size: 11
10747096 GACTTTTGAG
* *
10747106 TTAAATTGATT
1 TTAAATTTAAT
10747117 TTAAATTT-AT
1 TTAAATTTAAT
10747127 TTAAATTTAGAT
1 TTAAATTTA-AT
*
10747139 TT-ATTTTAAAT
1 TTAAATTT-AAT
10747150 TTAAA--T-AT
1 TTAAATTTAAT
10747158 TTAAATTTAAT
1 TTAAATTTAAT
*
10747169 TTGAATTTAAAT
1 TTAAATTT-AAT
10747181 TTAAAT
1 TTAAAT
10747187 AAAATTAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
8 7 0.12
10 11 0.20
11 24 0.43
12 14 0.25
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (11 bp):
TTAAATTTAAT
Found at i:10747399 original size:20 final size:20
Alignment explanation
Indices: 10747374--10747432 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
10747364 GTGCCTACTG
*
10747374 CTGCTGGCCACCAGCTCCAT
1 CTGCTGACCACCAGCTCCAT
*
10747394 CTGCTGACTACCAGCTCCAT
1 CTGCTGACCACCAGCTCCAT
10747414 CTGCTGACC-CCAAGCTCCA
1 CTGCTGACCACC-AGCTCCA
10747433 CCATGCCCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
19 2 0.06
20 33 0.94
ACGTcount: A:0.19, C:0.44, G:0.17, T:0.20
Consensus pattern (20 bp):
CTGCTGACCACCAGCTCCAT
Found at i:10747926 original size:9 final size:9
Alignment explanation
Indices: 10747912--10748009 Score: 74
Period size: 9 Copynumber: 10.3 Consensus size: 9
10747902 AAATGAGGTT
10747912 TAATATTAA
1 TAATATTAA
10747921 TAATATT-A
1 TAATATTAA
10747929 TAATGGCATTAA
1 TAAT---ATTAA
10747941 TAATATTAA
1 TAATATTAA
*
10747950 TAATATTAT
1 TAATATTAA
10747959 TAATGGCATTAA
1 TAAT---ATTAA
10747971 TAATATTAA
1 TAATATTAA
**
10747980 TAACGGTT-A
1 TAA-TATTAA
*
10747989 TAATATCAA
1 TAATATTAA
*
10747998 TAATAATAA
1 TAATATTAA
10748007 TAA
1 TAA
10748010 ATTTATTTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 18
0.72 0.09 0.18
Matches are distributed among these distances:
8 6 0.08
9 47 0.66
10 2 0.03
11 3 0.04
12 13 0.18
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (9 bp):
TAATATTAA
Found at i:10747960 original size:21 final size:21
Alignment explanation
Indices: 10747915--10747978 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
10747905 TGAGGTTTAA
**
10747915 TATTAATAATATT-ATAATGG
1 TATTAATAATATTAATAATAT
*
10747935 CATTAATAATATTAATAATAT
1 TATTAATAATATTAATAATAT
***
10747956 TATTAATGGCATTAATAATAT
1 TATTAATAATATTAATAATAT
10747977 TA
1 TA
10747979 ATAACGGTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
20 12 0.33
21 24 0.67
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (21 bp):
TATTAATAATATTAATAATAT
Found at i:10747965 original size:30 final size:29
Alignment explanation
Indices: 10747912--10747982 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 29
10747902 AAATGAGGTT
10747912 TAATATTAATAATATTATAATGGCATTAA
1 TAATATTAATAATATTATAATGGCATTAA
10747941 TAATATTAATAATATTATTAATGGCATTAA
1 TAATATTAATAATATTA-TAATGGCATTAA
10747971 TAATATTAATAA
1 TAATATTAATAA
10747983 CGGTTATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 17 0.41
30 24 0.59
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (29 bp):
TAATATTAATAATATTATAATGGCATTAA
Found at i:10748275 original size:15 final size:15
Alignment explanation
Indices: 10748257--10748318 Score: 69
Period size: 15 Copynumber: 4.3 Consensus size: 15
10748247 TAAAAAAAAC
*
10748257 AAAGAAAGAAAAGGG
1 AAAGAAAGAAAAGAG
10748272 AAAGAAA-AAATAGAG
1 AAAGAAAGAAA-AGAG
10748287 AACA-AAAGAAAAGAG
1 AA-AGAAAGAAAAGAG
10748302 AAAG-AAGAAAAG-G
1 AAAGAAAGAAAAGAG
10748315 AAAG
1 AAAG
10748319 GGCGACTCTT
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
13 5 0.12
14 12 0.29
15 21 0.50
16 4 0.10
ACGTcount: A:0.71, C:0.02, G:0.26, T:0.02
Consensus pattern (15 bp):
AAAGAAAGAAAAGAG
Found at i:10749029 original size:30 final size:30
Alignment explanation
Indices: 10748993--10749475 Score: 531
Period size: 30 Copynumber: 16.4 Consensus size: 30
10748983 AACAATCTAG
*
10748993 AAATTACATTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
*
10749023 AAATTACA-TTTGACCTTAAAACTTTT-CA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* *
10749051 AAATTATA-TTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
** * *
10749080 AAATTACATTGGGACCCCAAAACGTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* * * ***
10749110 AAATTAGATTTTAACCTCAAAAAC--GGGCA
1 AAATTACATTTTGACC-CTAAAACTTTTCCA
10749139 AAATTACA-TTTGACCCTAAAACTTTT-CA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* * * * *
10749167 AAATTATACTTTAACCCCAAAACTTATCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
*
10749197 AAATTACATTTTAACCCTAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* *
10749227 AAATTATATTTTAACCCTAAAAC-TTTCCAA
1 AAATTACATTTTGACCCTAAAACTTTTCC-A
* *
10749257 AAATTACATTTTAACCCTAAAACTTTACCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* * *
10749287 AAATTATATTTTGACCCCAAAACTTTTCTA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* *
10749317 AAATTATATTTTGACCCTGAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
*
10749347 AAATTACATTTTGACCCTAAAA-TTTCTCAA
1 AAATTACATTTTGACCCTAAAACTTT-TCCA
**
10749377 AAATTACATTTTGACCCCGAAAC-TTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
*
10749406 AAATTATATTTTGACCCTAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* *
10749436 AAATTACATTTTGACCC-CAAAC-TTTCAA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
10749464 AAATTACCATTT
1 AAATTA-CATTT
10749476 ACCCCTCGAA
Statistics
Matches: 387, Mismatches: 53, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
27 6 0.02
28 51 0.13
29 89 0.23
30 231 0.60
31 10 0.03
ACGTcount: A:0.39, C:0.22, G:0.04, T:0.34
Consensus pattern (30 bp):
AAATTACATTTTGACCCTAAAACTTTTCCA
Found at i:10756903 original size:22 final size:22
Alignment explanation
Indices: 10756878--10756919 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
10756868 TACAAAGAGG
*
10756878 AAGAACATGAATATCCACTAGA
1 AAGAACATGAATATACACTAGA
10756900 AAGAACATGAATATACACTA
1 AAGAACATGAATATACACTA
10756920 TCCAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.17, G:0.12, T:0.19
Consensus pattern (22 bp):
AAGAACATGAATATACACTAGA
Found at i:10757705 original size:17 final size:17
Alignment explanation
Indices: 10757680--10757713 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10757670 TTCAAACTAC
* *
10757680 TGATGAAGATGAAACGT
1 TGATAAAGATAAAACGT
10757697 TGATAAAGATAAAACGT
1 TGATAAAGATAAAACGT
10757714 AAACAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
TGATAAAGATAAAACGT
Found at i:10758272 original size:61 final size:60
Alignment explanation
Indices: 10758139--10758298 Score: 191
Period size: 59 Copynumber: 2.7 Consensus size: 60
10758129 TGGTATTTAG
* *
10758139 ACTTAACACTTTTTTT-TAATTTGGTACCTAAACTTTTTTTGACCCAATTTGGTACCTGA
1 ACTTGACACTTTTTTTCTAATTTGGTACCTAAACTTTTTTTGACCCAATTTGATACCTGA
* * *
10758198 ATTTGACATTTTTTTTCCTAATTTGGTACCTAAACTTTTTTTGAACCCAATTTGATACTTGA
1 ACTTGACACTTTTTTT-CTAATTTGGTACCTAAACTTTTTTTG-ACCCAATTTGATACCTGA
* * * **
10758260 ACTT-CCACTTTTTCT-TAATTTGGTATCTAAGTTTTTTTT
1 ACTTGACACTTTTTTTCTAATTTGGTACCTAAACTTTTTTT
10758299 TTGTCTAATT
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
59 34 0.40
61 33 0.38
62 19 0.22
ACGTcount: A:0.24, C:0.17, G:0.09, T:0.50
Consensus pattern (60 bp):
ACTTGACACTTTTTTTCTAATTTGGTACCTAAACTTTTTTTGACCCAATTTGATACCTGA
Found at i:10758272 original size:62 final size:59
Alignment explanation
Indices: 10758148--10758298 Score: 180
Period size: 61 Copynumber: 2.5 Consensus size: 59
10758138 GACTTAACAC
* **
10758148 TTTTTTTTAATTTGGTACCTAAACTTTTTTTGACCCAATTTGGTACCTGAATTTGACAT
1 TTTTTTTTAATTTGGTACCTAAACTTTTTTTGACCCAATTTGATACCTGAATTCCACAT
*
10758207 TTTTTTTCCTAATTTGGTACCTAAACTTTTTTTGAACCCAATTTGATACTTGAACTTCCAC--
1 TTTTTTT--TAATTTGGTACCTAAACTTTTTTTG-ACCCAATTTGATACCTGAA-TTCCACAT
* * **
10758268 TTTTTCTTAATTTGGTATCTAAGTTTTTTTT
1 TTTTTTTTAATTTGGTACCTAAACTTTTTTT
10758299 TTGTCTAATT
Statistics
Matches: 80, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
59 28 0.35
61 31 0.39
62 17 0.21
63 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.10, T:0.52
Consensus pattern (59 bp):
TTTTTTTTAATTTGGTACCTAAACTTTTTTTGACCCAATTTGATACCTGAATTCCACAT
Found at i:10763625 original size:11 final size:11
Alignment explanation
Indices: 10763605--10763657 Score: 56
Period size: 11 Copynumber: 4.9 Consensus size: 11
10763595 GGTCCCTGTA
*
10763605 ATTTTTATTTT
1 ATTTTAATTTT
10763616 ATTTTAA-TTT
1 ATTTTAATTTT
10763626 AGTTTT-ATTTT
1 A-TTTTAATTTT
*
10763637 ATTTTATTTTT
1 ATTTTAATTTT
*
10763648 TTTTTAATTT
1 ATTTTAATTT
10763658 GTACCTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
10 9 0.26
11 26 0.74
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (11 bp):
ATTTTAATTTT
Found at i:10763633 original size:16 final size:15
Alignment explanation
Indices: 10763608--10763657 Score: 64
Period size: 16 Copynumber: 3.2 Consensus size: 15
10763598 CCCTGTAATT
10763608 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
*
10763623 TTTAGTTTTATTTTAT
1 TTTA-TTTTATTTTAA
*
10763639 TTTATTTTTTTTTTAA
1 TTTA-TTTTATTTTAA
10763655 TTT
1 TTT
10763658 GTACCTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 4 0.13
16 26 0.87
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
TTTATTTTATTTTAA
Found at i:10763652 original size:5 final size:5
Alignment explanation
Indices: 10763607--10763650 Score: 63
Period size: 5 Copynumber: 8.8 Consensus size: 5
10763597 TCCCTGTAAT
*
10763607 TTTTA TTTTA TTTTA ATTTA GTTTTA TTTTA TTTTA TTTT- TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTT
10763651 TTAATTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
4 4 0.11
5 28 0.78
6 4 0.11
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10763652 original size:21 final size:21
Alignment explanation
Indices: 10763605--10763674 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
10763595 GGTCCCTGTA
10763605 ATTTTTATTTTATTTTAATTT
1 ATTTTTATTTTATTTTAATTT
* *
10763626 AGTTTTATTTTATTTTATTTT
1 ATTTTTATTTTATTTTAATTT
* *
10763647 TTTTTTAATTTGTACCTTTAATTT
1 ATTTTT-ATTT-TA-TTTTAATTT
10763671 ATTT
1 ATTT
10763675 GAGTTTTCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
21 23 0.59
22 4 0.10
23 2 0.05
24 10 0.26
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73
Consensus pattern (21 bp):
ATTTTTATTTTATTTTAATTT
Found at i:10763818 original size:4 final size:4
Alignment explanation
Indices: 10763771--10763920 Score: 87
Period size: 4 Copynumber: 36.8 Consensus size: 4
10763761 CATTTGGTCC
* * *
10763771 TATT TATT TGTT TATAT TATCT TATT TA-G TATT TAAT T-TT TATT TATT
1 TATT TATT TATT TAT-T TAT-T TATT TATT TATT TATT TATT TATT TATT
* * *
10763819 TATT GT-TT TATT TATT TATT TATT T-GT TATT CATT TTTT TATGT TATT
1 TATT -TATT TATT TATT TATT TATT TATT TATT TATT TATT TAT-T TATT
* ** *
10763867 TATAT TCTT GCCTT TATT TAATCT TATT T-TT TATG TATTT TATT TATT
1 TAT-T TATT -TATT TATT T-AT-T TATT TATT TATT TA-TT TATT TATT
10763915 T-TT TAT
1 TATT TAT
10763921 GCCATTTATA
Statistics
Matches: 113, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
3 13 0.12
4 72 0.64
5 26 0.23
6 2 0.02
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:10763872 original size:23 final size:23
Alignment explanation
Indices: 10763771--10763873 Score: 66
Period size: 23 Copynumber: 4.9 Consensus size: 23
10763761 CATTTGGTCC
*
10763771 TATTTATTTGTTT-ATATT-ATCT
1 TATTTATTTATTTGATATTCAT-T
*
10763793 TATTTA-GTATTT-A-ATT--TT
1 TATTTATTTATTTGATATTCATT
*
10763811 TATTTATTTA-TTG-T-TTTATT
1 TATTTATTTATTTGATATTCATT
*
10763831 TATTTATTTATTTGTTATTCATT
1 TATTTATTTATTTGATATTCATT
*
10763854 TTTTTATGTTATTT-ATATTC
1 TATTTAT-TTATTTGATATTC
10763874 TTGCCTTTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
18 11 0.17
19 3 0.05
20 15 0.23
21 8 0.12
22 7 0.11
23 16 0.24
24 6 0.09
ACGTcount: A:0.22, C:0.03, G:0.05, T:0.70
Consensus pattern (23 bp):
TATTTATTTATTTGATATTCATT
Found at i:10763928 original size:20 final size:20
Alignment explanation
Indices: 10763890--10763933 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
10763880 TTATTTAATC
*
10763890 TTATTTTTTATGTATTTTAT
1 TTATTTTTTATGCATTTTAT
10763910 TTATTTTTTATGCCATTTATAT
1 TTATTTTTTATG-CATTT-TAT
10763932 TT
1 TT
10763934 TTGCCTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.57
21 4 0.19
22 5 0.24
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (20 bp):
TTATTTTTTATGCATTTTAT
Found at i:10763969 original size:61 final size:60
Alignment explanation
Indices: 10763829--10763970 Score: 162
Period size: 60 Copynumber: 2.3 Consensus size: 60
10763819 TATTGTTTTA
* * ** *
10763829 TTTATTTATTTATTTGTTATTCATTTTTTTATGTTATTTATATTCTTGCCTTTATTTAAT
1 TTTATTTTTTTATTTTTTATTCATTTTTTTATGCCATTTATATTCTTGCCTTTATTCAAT
* * *
10763889 CTTA-TTTTTTATGTATTTTATTTA-TTTTTTATGCCATTTATATTTTTGCCTTTTATTCAATT
1 TTTATTTTTTTAT-T-TTTTATTCATTTTTTTATGCCATTTATATTCTTGCC-TTTATTCAA-T
10763951 TTTATTTTTTTATTTTTTAT
1 TTTATTTTTTTATTTTTTAT
10763971 AGTTTTTGCC
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
59 7 0.10
60 27 0.40
61 21 0.31
62 5 0.07
63 8 0.12
ACGTcount: A:0.19, C:0.07, G:0.04, T:0.70
Consensus pattern (60 bp):
TTTATTTTTTTATTTTTTATTCATTTTTTTATGCCATTTATATTCTTGCCTTTATTCAAT
Found at i:10770425 original size:6 final size:7
Alignment explanation
Indices: 10770399--10770430 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
10770389 TGCAAATAAA
10770399 TCATTTC
1 TCATTTC
10770406 TCATTTC
1 TCATTTC
10770413 TCATTTC
1 TCATTTC
10770420 -CATTTC
1 TCATTTC
10770426 -CATTT
1 TCATTT
10770431 TTGTTTCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 11 0.44
7 14 0.56
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (7 bp):
TCATTTC
Found at i:10772592 original size:4 final size:4
Alignment explanation
Indices: 10772585--10772745 Score: 88
Period size: 4 Copynumber: 40.0 Consensus size: 4
10772575 ATTTGGTCCC
* *
10772585 ATTT ATTT -TTT ATATT ATTT ATATT ATTTT ATTT A-GT ATTT AATT -TTT
1 ATTT ATTT ATTT AT-TT ATTT AT-TT A-TTT ATTT ATTT ATTT ATTT ATTT
* *
10772633 ATTT ATTT -TTT GTTTT ATTT ATTT ATTT ATTT -GTT ATTT A-TT -TTT
1 ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
* * * *
10772678 ATGTT ATTT ATATT CTTGC CTTT ATTT AATCTT ATTT ATTT A-TT GTTT
1 AT-TT ATTT AT-TT ATT-T ATTT ATTT -AT-TT ATTT ATTT ATTT ATTT
*
10772726 -TTT ATGT ATTTT ATTT ATTT
1 ATTT ATTT A-TTT ATTT ATTT
10772746 GTTTTTAATG
Statistics
Matches: 124, Mismatches: 14, Indels: 38
0.70 0.08 0.22
Matches are distributed among these distances:
3 21 0.17
4 70 0.56
5 30 0.24
6 3 0.02
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:10772604 original size:12 final size:11
Alignment explanation
Indices: 10772585--10772686 Score: 89
Period size: 11 Copynumber: 8.7 Consensus size: 11
10772575 ATTTGGTCCC
10772585 ATTTATTTTTT
1 ATTTATTTTTT
10772596 ATATTATTTATATT
1 AT-TTATTT-T-TT
**
10772610 ATTTTATTTAGT
1 A-TTTATTTTTT
*
10772622 ATTTAATTTTT
1 ATTTATTTTTT
10772633 ATTTATTTTTT
1 ATTTATTTTTT
*
10772644 GTTTTATTTATTT
1 -ATTTATTT-TTT
*
10772657 ATTTATTTGTT
1 ATTTATTTTTT
10772668 ATTTA-TTTTT
1 ATTTATTTTTT
10772678 ATGTTATTT
1 AT-TTATTT
10772687 ATATTCTTGC
Statistics
Matches: 73, Mismatches: 10, Indels: 15
0.74 0.10 0.15
Matches are distributed among these distances:
10 6 0.08
11 29 0.40
12 24 0.33
13 4 0.05
14 9 0.12
15 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.74
Consensus pattern (11 bp):
ATTTATTTTTT
Found at i:10772684 original size:11 final size:10
Alignment explanation
Indices: 10772599--10772745 Score: 63
Period size: 11 Copynumber: 14.0 Consensus size: 10
10772589 ATTTTTTATA
*
10772599 TTATTTA-TA
1 TTATTTATTT
10772608 TTATTTTATTT
1 TTA-TTTATTT
*
10772619 AGTATTTAATTT
1 -TTATTT-ATTT
10772631 TTATTTATTTT
1 TTATTTA-TTT
*
10772642 TTGTTTTATTTAT
1 TT-ATTTA-TT-T
10772655 TTATTTATTT
1 TTATTTATTT
10772665 GTTATTTATTT
1 -TTATTTATTT
10772676 TTATGTTATTT
1 TTAT-TTATTT
* *
10772687 ATATTCT-TGCCT
1 TTATT-TAT--TT
* *
10772699 TTATTTAATC
1 TTATTTATTT
10772709 TTATTTA--T
1 TTATTTATTT
10772717 TTATTGT-TTT
1 TTATT-TATTT
*
10772727 TTATGTA-TT
1 TTATTTATTT
10772736 TTATTTATTT
1 TTATTTATTT
10772746 GTTTTTAATG
Statistics
Matches: 106, Mismatches: 14, Indels: 35
0.68 0.09 0.23
Matches are distributed among these distances:
8 5 0.05
9 13 0.12
10 26 0.25
11 37 0.35
12 22 0.21
13 3 0.03
ACGTcount: A:0.21, C:0.03, G:0.05, T:0.71
Consensus pattern (10 bp):
TTATTTATTT
Found at i:10772729 original size:28 final size:25
Alignment explanation
Indices: 10772590--10772745 Score: 88
Period size: 27 Copynumber: 5.9 Consensus size: 25
10772580 GTCCCATTTA
10772590 TTTTTTATATTATTTATATTATTTTAT-
1 TTTTTTAT-TTATTTAT-TTATTTT-TG
*
10772617 TTAGTATTTAATT-TTTATTTATTTTT-
1 TT--T-TTTATTTATTTATTTATTTTTG
* *
10772643 TGTTTTATTTATTTATTTATTTGTTA
1 TTTTTTATTTATTTATTTATTT-TTG
*
10772669 TTTATT-TTTATGTTATTTATATTCTTG
1 TTTTTTATTTAT-TTATTTAT-TT-TTG
**
10772696 -CCTTTATTTAATCTTATTTATTTATTG
1 TTTTTTATTT-AT-TTATTTATTT-TTG
*
10772723 TTTTTTATGTATTTTATTTATTT
1 TTTTTTATTTA-TTTATTTATTT
10772746 GTTTTTAATG
Statistics
Matches: 102, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
23 6 0.06
24 12 0.12
25 7 0.07
26 16 0.16
27 32 0.31
28 22 0.22
29 3 0.03
30 4 0.04
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72
Consensus pattern (25 bp):
TTTTTTATTTATTTATTTATTTTTG
Found at i:10772762 original size:24 final size:22
Alignment explanation
Indices: 10772711--10772763 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 22
10772701 ATTTAATCTT
* *
10772711 ATTTATTTATTGTTTTTTATGT
1 ATTTATTTATTGTTTTTAATGC
10772733 ATTTTATTTATTTGTTTTTAATGCC
1 A-TTTATTTA-TTGTTTTTAATG-C
10772758 ATTTAT
1 ATTTAT
10772764 ATTTTTGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 1 0.04
23 8 0.31
24 16 0.62
25 1 0.04
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.68
Consensus pattern (22 bp):
ATTTATTTATTGTTTTTAATGC
Found at i:10775525 original size:57 final size:57
Alignment explanation
Indices: 10775463--10775571 Score: 175
Period size: 57 Copynumber: 1.9 Consensus size: 57
10775453 CTCTAGATTC
*
10775463 TTTTTTAGCATTTTCTTTTGGGTTCAGATATG-GAAAAATAAAAATTTAATATGGGTT
1 TTTTTTAGCATTTTCTTTTGGATTCAGATATGAG-AAAATAAAAATTTAATATGGGTT
* *
10775520 TTTTTTGGCATTTTCTTTTGGATTCAGATATGAGAAAATAAAGATTTAATAT
1 TTTTTTAGCATTTTCTTTTGGATTCAGATATGAGAAAATAAAAATTTAATAT
10775572 CAATGGCTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
57 47 0.98
58 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.46
Consensus pattern (57 bp):
TTTTTTAGCATTTTCTTTTGGATTCAGATATGAGAAAATAAAAATTTAATATGGGTT
Found at i:10782248 original size:16 final size:15
Alignment explanation
Indices: 10782213--10782257 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
10782203 TCCCTATAAT
10782213 TTTTATTTTATTTGA
1 TTTTATTTTATTTGA
* *
10782228 ATTTAGTTTTATTTTA
1 TTTTA-TTTTATTTGA
10782244 TTTTATTTCTATTT
1 TTTTATTT-TATTT
10782258 CTAATTTGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 7 0.28
16 18 0.72
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (15 bp):
TTTTATTTTATTTGA
Found at i:10782260 original size:6 final size:5
Alignment explanation
Indices: 10782213--10782257 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
10782203 TCCCTATAAT
* *
10782213 TTTTA TTTTA TTTGA ATTTA GTTTTA TTTTA TTTTA TTTCTA TTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT-TA TTT
10782258 CTAATTTGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:10782306 original size:30 final size:30
Alignment explanation
Indices: 10782239--10782311 Score: 71
Period size: 30 Copynumber: 2.4 Consensus size: 30
10782229 TTTAGTTTTA
10782239 TTTTATTTTATTTCTATTTCTAATTTGTAC
1 TTTTATTTTATTTCTATTTCTAATTTGTAC
* *
10782269 CTATATTTTATTTGCGT-TTTC-AATTTAGT-C
1 TTTTATTTTATTT-C-TATTTCTAATTT-GTAC
*
10782299 TTTTATTTAATTT
1 TTTTATTTTATTT
10782312 TTCCTCATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
30 27 0.77
31 7 0.20
32 1 0.03
ACGTcount: A:0.21, C:0.10, G:0.05, T:0.64
Consensus pattern (30 bp):
TTTTATTTTATTTCTATTTCTAATTTGTAC
Found at i:10782386 original size:4 final size:4
Alignment explanation
Indices: 10782379--10782532 Score: 77
Period size: 4 Copynumber: 37.5 Consensus size: 4
10782369 ATTTGGTCCC
* *
10782379 ATTT ATTT -TTT ATATT ATTT ATTTT ATTTT ATTT A-GT ATTT AATT -TTT
1 ATTT ATTT ATTT AT-TT ATTT A-TTT A-TTT ATTT ATTT ATTT ATTT ATTT
* * * *
10782427 ATTT GTTT ATTT ATTT -GTT ATTC ATTT -TTT ATGTT ATTT ATATT CTTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT-TT ATTT AT-TT ATTT
* * * *
10782475 CCTTT ATTT AATCTT ATTT ATTT ATTGT TTTT ATGT ATTTT ATTT GTTT
1 -ATTT ATTT -AT-TT ATTT ATTT ATT-T ATTT ATTT A-TTT ATTT ATTT
*
10782524 GTTT -TTT AT
1 ATTT ATTT AT
10782533 GCCATTTATA
Statistics
Matches: 118, Mismatches: 17, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
3 15 0.13
4 67 0.57
5 34 0.29
6 2 0.02
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:10782439 original size:12 final size:12
Alignment explanation
Indices: 10782424--10782465 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
10782414 GTATTTAATT
10782424 TTTATTTGTTTA
1 TTTATTTGTTTA
10782436 TTTATTTG-TTA
1 TTTATTTGTTTA
*
10782447 TTCATTT-TTTA
1 TTTATTTGTTTA
10782458 TGTTATTT
1 T-TTATTT
10782466 ATATTCTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (12 bp):
TTTATTTGTTTA
Found at i:10783937 original size:55 final size:55
Alignment explanation
Indices: 10783844--10783975 Score: 176
Period size: 55 Copynumber: 2.4 Consensus size: 55
10783834 ATTTGGATTG
* * * *
10783844 AATCGATTGTTATGCTGAAATATTGCTTCTTTTTAATCGATTATTTTTATGTTTA
1 AATCGATTGTCATGTTGAAATATTGCTTCTTTTTAATCGATTATTTATATATTTA
* * *
10783899 AATCGATTGCCATGTTGGAATATTGCTT-TTTTTGAATCGATTGTTTATATATTTA
1 AATCGATTGTCATGTTGAAATATTGCTTCTTTTT-AATCGATTATTTATATATTTA
*
10783954 AATCAATTGTCATGTTGAAATA
1 AATCGATTGTCATGTTGAAATA
10783976 CTTTATGATG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 5 0.08
55 61 0.92
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.48
Consensus pattern (55 bp):
AATCGATTGTCATGTTGAAATATTGCTTCTTTTTAATCGATTATTTATATATTTA
Found at i:10784407 original size:55 final size:55
Alignment explanation
Indices: 10784329--10784460 Score: 158
Period size: 55 Copynumber: 2.4 Consensus size: 55
10784319 TACATAAAAG
* * * *
10784329 TATTTCAATATGATAATTGATTTAAAAATATAAACAATCAATTCAAAAGTAA-CAA
1 TATTCCAACATGACAATTGATTTAAAAATAAAAACAATCAATTCAAAAG-AAGCAA
* * *
10784384 TATTCCAACATGACAATTGATTTAAACATAAAAACAATCGATTCAAATGAAGCAA
1 TATTCCAACATGACAATTGATTTAAAAATAAAAACAATCAATTCAAAAGAAGCAA
* * *
10784439 TATTCCAGCATAACAATCGATT
1 TATTCCAACATGACAATTGATT
10784461 CAATCCAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 2 0.03
55 64 0.97
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.30
Consensus pattern (55 bp):
TATTCCAACATGACAATTGATTTAAAAATAAAAACAATCAATTCAAAAGAAGCAA
Found at i:10785964 original size:59 final size:58
Alignment explanation
Indices: 10785842--10785966 Score: 166
Period size: 59 Copynumber: 2.1 Consensus size: 58
10785832 TTGCTAAAAC
*
10785842 CCACACATTAGAAACTTCAAAAATTATTTTCTTCTAAAATACTTGATTGAAATGGATAG
1 CCACACATTAGAAACTTCAAAAATTA-TTTCTTCTAAAATACATGATTGAAATGGATAG
* *
10785901 -CACACATACTAGAAACTTCAAAAATTGA-TTCTTCTAAATTACATGATTGAAATGGGT-G
1 CCACACAT--TAGAAACTTCAAAAATT-ATTTCTTCTAAAATACATGATTGAAATGGATAG
10785959 CCACACAT
1 CCACACAT
10785967 CATTTCAAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 8
0.84 0.04 0.11
Matches are distributed among these distances:
58 8 0.14
59 33 0.56
60 17 0.29
61 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31
Consensus pattern (58 bp):
CCACACATTAGAAACTTCAAAAATTATTTCTTCTAAAATACATGATTGAAATGGATAG
Found at i:10786672 original size:21 final size:21
Alignment explanation
Indices: 10786648--10786692 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
10786638 CTTGCTAGAG
10786648 GCACTCTATTTAACTCGGCCT
1 GCACTCTATTTAACTCGGCCT
10786669 GCACTCTATTTAACTCGGCCT
1 GCACTCTATTTAACTCGGCCT
10786690 GCA
1 GCA
10786693 AGTATGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.20, C:0.33, G:0.16, T:0.31
Consensus pattern (21 bp):
GCACTCTATTTAACTCGGCCT
Found at i:10790380 original size:13 final size:13
Alignment explanation
Indices: 10790358--10790396 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
10790348 TTCATTACCT
*
10790358 AAAAGCAAAAAAA
1 AAAAGTAAAAAAA
10790371 AAAAGTAAAAAAA
1 AAAAGTAAAAAAA
*
10790384 AGTAAGTAAAAAA
1 A-AAAGTAAAAAA
10790397 TAAGATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.08
Consensus pattern (13 bp):
AAAAGTAAAAAAA
Found at i:10791238 original size:59 final size:60
Alignment explanation
Indices: 10791158--10791334 Score: 259
Period size: 60 Copynumber: 3.0 Consensus size: 60
10791148 TTGGTATTTA
* *
10791158 AACTTAACACTTTTTT-CTAATTTGGTACCCAAACTTTTTTT-GACCCAATTTGGTACCTG
1 AACTTGACA-TTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACCCAATTTGGTACCTG
* *
10791217 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTGGACCCAATTTGGTACTTG
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACCCAATTTGGTACCTG
* * **
10791277 AACTTGGCATTTTTTCCTAATTTGGTAACTAAACTTTTTTTAGATTCAATTTGGTACC
1 AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACCCAATTTGGTACC
10791335 CAAATTTATT
Statistics
Matches: 107, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
58 6 0.06
59 32 0.30
60 69 0.64
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.45
Consensus pattern (60 bp):
AACTTGACATTTTTTCCTAATTTGGTACCTAAACTTTTTTTAGACCCAATTTGGTACCTG
Found at i:10791242 original size:31 final size:30
Alignment explanation
Indices: 10791168--10791312 Score: 115
Period size: 31 Copynumber: 4.9 Consensus size: 30
10791158 AACTTAACAC
*
10791168 TTTTTT-CTAATTTGGTACCCAAACTT---
1 TTTTTTCCTAATTTGGTACCTAAACTTGCA
* * *
10791194 TTTTTGACCCAATTTGGTACCTGAACTTGACA
1 TTTTT-TCCTAATTTGGTACCTAAACTTG-CA
10791226 TTTTTTCCTAATTTGGTACCTAAACTT---
1 TTTTTTCCTAATTTGGTACCTAAACTTGCA
* * * *
10791253 TTTTTGGACCCAATTTGGTACTTGAACTTGGCA
1 TTTTT--TCCTAATTTGGTACCTAAACTT-GCA
*
10791286 TTTTTTCCTAATTTGGTAACTAAACTT
1 TTTTTTCCTAATTTGGTACCTAAACTT
10791313 TTTTTAGATT
Statistics
Matches: 91, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
26 5 0.05
27 5 0.05
28 17 0.19
29 18 0.20
31 36 0.40
32 5 0.05
33 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (30 bp):
TTTTTTCCTAATTTGGTACCTAAACTTGCA
Found at i:10791599 original size:31 final size:31
Alignment explanation
Indices: 10791557--10791674 Score: 104
Period size: 31 Copynumber: 3.8 Consensus size: 31
10791547 GTACCAACTT
10791557 AAAAAAGTGTCAAGTTTAGGTACCAAATTAGG
1 AAAAAA-TGTCAAGTTTAGGTACCAAATTAGG
10791589 AAAAAATGTCAAGTTT-GAGTACCAAATT-GG
1 AAAAAATGTCAAGTTTAG-GTACCAAATTAGG
* *
10791619 ACCAAAAA----AAGTTTTAGGTACCAACTTAGAA
1 A--AAAAATGTCAAG-TTTAGGTACCAAATTAG-G
* *
10791650 AAAAAATGTCAAGTTCAGATACCAA
1 AAAAAATGTCAAGTTTAGGTACCAA
10791675 TTGTTATATT
Statistics
Matches: 71, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
28 3 0.04
29 17 0.24
30 6 0.08
31 21 0.30
32 21 0.30
33 3 0.04
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.24
Consensus pattern (31 bp):
AAAAAATGTCAAGTTTAGGTACCAAATTAGG
Found at i:10791616 original size:88 final size:89
Alignment explanation
Indices: 10791488--10791652 Score: 228
Period size: 88 Copynumber: 1.9 Consensus size: 89
10791478 AAAAGACAAT
* *
10791488 GTACCAAAGTAGGAAAAAGAGTCAAGTTCAAGTACTAAATTGGACCCCAAAAAA-TTTAAGTACC
1 GTACCAAAGTAGGAAAAAGAGTCAAGTTCAAGTACCAAATTGGA-CCAAAAAAAGTTTAAGTACC
10791552 AACTTA-AAAAAGTGTCAAGTTTAG
65 AACTTAGAAAAAGTGTCAAGTTTAG
* ** *
10791576 GTACCAAATTAGGAAAAA-ATGTCAAGTTTGAGTACCAAATTGGACCAAAAAAAGTTTTAGGTAC
1 GTACCAAAGTAGGAAAAAGA-GTCAAGTTCAAGTACCAAATTGGACCAAAAAAAG-TTTAAGTAC
10791640 CAACTTAGAAAAA
64 CAACTTAGAAAAA
10791653 AAATGTCAAG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
87 9 0.13
88 38 0.57
89 15 0.22
90 5 0.07
ACGTcount: A:0.46, C:0.14, G:0.17, T:0.23
Consensus pattern (89 bp):
GTACCAAAGTAGGAAAAAGAGTCAAGTTCAAGTACCAAATTGGACCAAAAAAAGTTTAAGTACCA
ACTTAGAAAAAGTGTCAAGTTTAG
Found at i:10794123 original size:40 final size:41
Alignment explanation
Indices: 10794072--10794163 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
10794062 CCACGTCAGC
10794072 AAAT-ATTTTAAAATTA-TTTTTTAAAATAA-AAAATTTATT
1 AAATAATTTTAAAATTATTTTTTTAAAATAATAAAA-TTATT
*
10794111 AAA-AATTATTAAAATTATTTTTTTTAAATAATAAAATTATT
1 AAATAATT-TTAAAATTATTTTTTTAAAATAATAAAATTATT
10794152 AAATAATTTTAA
1 AAATAATTTTAA
10794164 TTTCCAATTT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
39 6 0.13
40 9 0.19
41 24 0.51
42 8 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (41 bp):
AAATAATTTTAAAATTATTTTTTTAAAATAATAAAATTATT
Found at i:10795999 original size:3 final size:3
Alignment explanation
Indices: 10795986--10796032 Score: 58
Period size: 3 Copynumber: 15.3 Consensus size: 3
10795976 TTGAAGGGGA
* * *
10795986 ATG AGG ATG ATG ATG ATG ATG ATG ATG AGG AATG GTG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG -ATG ATG ATG ATG ATG
10796032 A
1 A
10796033 CTTTAAAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
3 35 0.95
4 2 0.05
ACGTcount: A:0.34, C:0.00, G:0.38, T:0.28
Consensus pattern (3 bp):
ATG
Found at i:10799772 original size:6 final size:6
Alignment explanation
Indices: 10799754--10799795 Score: 57
Period size: 6 Copynumber: 6.8 Consensus size: 6
10799744 GCAAATAAAT
* *
10799754 CATTTC TCATTTC CATTTC CATTTC CATTTT TATTTC CATTT
1 CATTTC -CATTTC CATTTC CATTTC CATTTC CATTTC CATTT
10799796 AGAGAAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (6 bp):
CATTTC
Found at i:10800582 original size:15 final size:16
Alignment explanation
Indices: 10800551--10800583 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
10800541 CATTTACATT
10800551 TTACCCTAACTACCCAA
1 TTACCCTAAC-ACCCAA
10800568 TTACCCTAA-ACCCAA
1 TTACCCTAACACCCAA
10800583 T
1 T
10800584 GACTAGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.24
Consensus pattern (16 bp):
TTACCCTAACACCCAA
Found at i:10801688 original size:16 final size:16
Alignment explanation
Indices: 10801651--10801691 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
10801641 GGTCCCTATA
*
10801651 AATTTTATTTTATTTG
1 AATTTTATTTAATTTG
10801667 AA-TTTAGTTTAATTT-
1 AATTTTA-TTTAATTTG
10801682 AATTTTATTT
1 AATTTTATTT
10801692 CTATTTCTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
AATTTTATTTAATTTG
Found at i:10802760 original size:51 final size:51
Alignment explanation
Indices: 10802568--10802752 Score: 262
Period size: 51 Copynumber: 3.6 Consensus size: 51
10802558 CTATAAACGA
* * *
10802568 AAAGGTCCGATGACTAAGTGTCATCGTGAGCAAATGAATCCTTTATGGGTT
1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTATGGATT
* * * *
10802619 ACAGGGTCCGATGACTAAGTGTCATTATGAGTAAATGAATCTTTTACGGATT
1 A-AAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTATGGATT
* * *
10802671 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTATGGATT
*
10802722 AAAGGTCCGATGACTTAGTGTCATCATGAGT
1 AAAGGTCCGATGACTAAGTGTCATCATGAGT
10802753 GTATGAATTC
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
51 73 0.62
52 44 0.38
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCATGAGTAAATGAATCCTTTATGGATT
Found at i:10806743 original size:31 final size:31
Alignment explanation
Indices: 10806705--10806782 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
10806695 CTTCCATAAA
10806705 CAAGTTTAGGTACCAAATTAGGAAAAAGTGT
1 CAAGTTTAGGTACCAAATTAGGAAAAAGTGT
**
10806736 CAAGTTTAGGTATTAAATTAGGAAAAAGTGT
1 CAAGTTTAGGTACCAAATTAGGAAAAAGTGT
10806767 CAAGTTT-GAGTACCAA
1 CAAGTTTAG-GTACCAA
10806783 TGCAACACCC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 1 0.02
31 41 0.98
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (31 bp):
CAAGTTTAGGTACCAAATTAGGAAAAAGTGT
Found at i:10810049 original size:28 final size:30
Alignment explanation
Indices: 10810009--10810071 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
10809999 GCAAATGATT
10810009 TTAAAATTA-TTTTTAAAAT-ATAAAATTA
1 TTAAAATTATTTTTTAAAATAATAAAATTA
*
10810037 TTAAAATTATTTTTTTAAATAATAAAATTA
1 TTAAAATTATTTTTTAAAATAATAAAATTA
10810067 TTAAA
1 TTAAA
10810072 TAATTTTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 9 0.28
29 9 0.28
30 14 0.44
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
TTAAAATTATTTTTTAAAATAATAAAATTA
Found at i:10810077 original size:29 final size:30
Alignment explanation
Indices: 10810013--10810078 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
10810003 ATGATTTTAA
10810013 AATTATTTTTAAAATATAAAATTATTAAAAT
1 AATT-TTTTTAAAATATAAAATTATTAAAAT
*
10810044 TATTTTTTT-AAATAATAAAATTATT-AAAT
1 AATTTTTTTAAAAT-ATAAAATTATTAAAAT
10810073 AATTTT
1 AATTTT
10810079 AATTTCCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 13 0.41
30 16 0.50
31 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (30 bp):
AATTTTTTTAAAATATAAAATTATTAAAAT
Found at i:10813516 original size:603 final size:603
Alignment explanation
Indices: 10812372--10813578 Score: 2369
Period size: 603 Copynumber: 2.0 Consensus size: 603
10812362 GAACTTCAAT
*
10812372 TCATATATAATAATACTCTATAAATATTTAATAAAAATATTTACCGCTCTTAATTTCAGAATCGA
1 TCATATATAATAATACTCTATAAATATTTAATAAAAATATTTACCGCTCTTAATTTCAGAACCGA
10812437 GGTCCCGATACCTCATTTTCTAAAATCACTTGACTTTTGATCCAAACCACTTATACTAATTTTTA
66 GGTCCCGATACCTCATTTTCTAAAATCACTTGACTTTTGATCCAAACCACTTATACTAATTTTTA
*
10812502 ATTCAATAATTAAACTTTGTCAATTCAAAATTCCATATAAAATTATTATTGACTTATTTGATTTA
131 ATTCAATAATTAAAATTTGTCAATTCAAAATTCCATATAAAATTATTATTGACTTATTTGATTTA
10812567 AACACTCATTATAAAAATTTTCCTGTCCGGTTTGTGGTTCCCAAAATCACTATTTTCGACATCAC
196 AACACTCATTATAAAAATTTTCCTGTCCGGTTTGTGGTTCCCAAAATCACTATTTTCGACATCAC
*
10812632 TGAAAAACGAACTGTTACATTTTCCATTATGCGAAGGGTGACGTGACAATTAAAAAATCAACATA
261 TGAAAAACGAACTGTTACATTTTCCACTATGCGAAGGGTGACGTGACAATTAAAAAATCAACATA
*
10812697 ATAATAAATTTAATCCTAAACTTTCACATATTATATCAATTTAATTATAATTTTAAAAATTAACC
326 ATAATAAATTTAATCCTAAACTTTCACATATTATATCAATTTAATTATAATTTTAAAAACTAACC
10812762 CTCAAAATTTATAAATGATCTTAATTTGATCCTCAAAATTTACCTTCCTCTCCCACTTCTCCACC
391 CTCAAAATTTATAAATGATCTTAATTTGATCCTCAAAATTTACCTTCCTCTCCCACTTCTCCACC
*
10812827 CCACTACCATCATTGTCTCTACATTCTCCTCAAAAATTAGATTTATTTATATAGTATACTTTTTG
456 CCACTACCATCATTGTCTCCACATTCTCCTCAAAAATTAGATTTATTTATATAGTATACTTTTTG
10812892 TGCCATGTGATCAGAACTATATGCCAAGTCTGCCAAGCTGTGAGGAAGATTGGAATCTCATGCAG
521 TGCCATGTGATCAGAACTATATGCCAAGTCTGCCAAGCTGTGAGGAAGATTGGAATCTCATGCAG
10812957 TGGCGAAGCCAGGAGTGG
586 TGGCGAAGCCAGGAGTGG
10812975 TCATATATAATAATACTCTATAAATATTTAATAAAAATATTTACCGCTCTTAATTTCAGAACCGA
1 TCATATATAATAATACTCTATAAATATTTAATAAAAATATTTACCGCTCTTAATTTCAGAACCGA
10813040 GGTCCCGATACCTCATTTTCTAAAATCACTTGACTTTTGATCCAAACCACTTATACTAATTTTTA
66 GGTCCCGATACCTCATTTTCTAAAATCACTTGACTTTTGATCCAAACCACTTATACTAATTTTTA
10813105 ATTCAATAATTAAAATTTGTCAATTCAAAATTCCATATAAAATTATTATTGACTTATTTGATTTA
131 ATTCAATAATTAAAATTTGTCAATTCAAAATTCCATATAAAATTATTATTGACTTATTTGATTTA
10813170 AACACTCATTATAAAAATTTTCCTGTCCGGTTTGTGGTTCCCAAAATCACTATTTTCGACATCAC
196 AACACTCATTATAAAAATTTTCCTGTCCGGTTTGTGGTTCCCAAAATCACTATTTTCGACATCAC
10813235 TGAAAAACGAACTGTTACATTTTCCACTATGCGAAGGGTGACGTGACAATTAAAAAATCAACATA
261 TGAAAAACGAACTGTTACATTTTCCACTATGCGAAGGGTGACGTGACAATTAAAAAATCAACATA
10813300 ATAATAAATTTAATCCTAAACTTTCACATATTATATCAATTTAATTATAATTTTAAAAACTAACC
326 ATAATAAATTTAATCCTAAACTTTCACATATTATATCAATTTAATTATAATTTTAAAAACTAACC
10813365 CTCAAAATTTATAAATGATCTTAATTTGATCCTCAAAATTTACCTTCCTCTCCCACTTCTCCACC
391 CTCAAAATTTATAAATGATCTTAATTTGATCCTCAAAATTTACCTTCCTCTCCCACTTCTCCACC
10813430 CCACTACCATCATTGTCTCCACATTCTCCTCAAAAATTAGATTTATTTATATAGTATACTTTTTG
456 CCACTACCATCATTGTCTCCACATTCTCCTCAAAAATTAGATTTATTTATATAGTATACTTTTTG
10813495 TGCCATGTGATCAGAACTATATGCCAAGTCTGCCAAGCTGTGAGGAAGATTGGAATCTCATGCAG
521 TGCCATGTGATCAGAACTATATGCCAAGTCTGCCAAGCTGTGAGGAAGATTGGAATCTCATGCAG
10813560 TGGCGAAGCCAGGAGTGG
586 TGGCGAAGCCAGGAGTGG
10813578 T
1 T
10813579 AGGGGCCTTG
Statistics
Matches: 599, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
603 599 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (603 bp):
TCATATATAATAATACTCTATAAATATTTAATAAAAATATTTACCGCTCTTAATTTCAGAACCGA
GGTCCCGATACCTCATTTTCTAAAATCACTTGACTTTTGATCCAAACCACTTATACTAATTTTTA
ATTCAATAATTAAAATTTGTCAATTCAAAATTCCATATAAAATTATTATTGACTTATTTGATTTA
AACACTCATTATAAAAATTTTCCTGTCCGGTTTGTGGTTCCCAAAATCACTATTTTCGACATCAC
TGAAAAACGAACTGTTACATTTTCCACTATGCGAAGGGTGACGTGACAATTAAAAAATCAACATA
ATAATAAATTTAATCCTAAACTTTCACATATTATATCAATTTAATTATAATTTTAAAAACTAACC
CTCAAAATTTATAAATGATCTTAATTTGATCCTCAAAATTTACCTTCCTCTCCCACTTCTCCACC
CCACTACCATCATTGTCTCCACATTCTCCTCAAAAATTAGATTTATTTATATAGTATACTTTTTG
TGCCATGTGATCAGAACTATATGCCAAGTCTGCCAAGCTGTGAGGAAGATTGGAATCTCATGCAG
TGGCGAAGCCAGGAGTGG
Found at i:10814690 original size:13 final size:13
Alignment explanation
Indices: 10814657--10814696 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
10814647 ATTTTCTTGG
* *
10814657 TTTCTACTATCTG
1 TTTCTTCTATCTT
10814670 TTTCTTCTATCTT
1 TTTCTTCTATCTT
*
10814683 TTTTTTCTATCTT
1 TTTCTTCTATCTT
10814696 T
1 T
10814697 GTTGTATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.10, C:0.20, G:0.03, T:0.68
Consensus pattern (13 bp):
TTTCTTCTATCTT
Found at i:10826634 original size:21 final size:21
Alignment explanation
Indices: 10826610--10826661 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
10826600 TTCTGCTTCT
10826610 TCTTTCTCTTTCTCATCTTGA
1 TCTTTCTCTTTCTCATCTTGA
*
10826631 TCTTTCTCATTCTCATCTTGA
1 TCTTTCTCTTTCTCATCTTGA
10826652 TCTTTCTCTT
1 TCTTTCTCTT
10826662 AATTACCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.10, C:0.29, G:0.04, T:0.58
Consensus pattern (21 bp):
TCTTTCTCTTTCTCATCTTGA
Found at i:10836565 original size:21 final size:21
Alignment explanation
Indices: 10836541--10836594 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
10836531 CCTGTGCTAG
10836541 TTCTACCGATACAAGTACA-AC
1 TTCTACCGATACAAGT-CATAC
*
10836562 TTCTACCGATACAAGTCATGC
1 TTCTACCGATACAAGTCATAC
10836583 TTCTACCGATAC
1 TTCTACCGATAC
10836595 TAAAAACTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 2 0.06
21 29 0.94
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.28
Consensus pattern (21 bp):
TTCTACCGATACAAGTCATAC
Found at i:10840096 original size:24 final size:24
Alignment explanation
Indices: 10840068--10840138 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
10840058 TTCCAGAAAT
10840068 TTAGCTCATACGAGCCCAGATAGG
1 TTAGCTCATACGAGCCCAGATAGG
* * *
10840092 TTAGCTCTTACGAGCCAAGATAAG
1 TTAGCTCATACGAGCCCAGATAGG
* *
10840116 TTAGATCATTCGAGCCCAGATAG
1 TTAGCTCATACGAGCCCAGATAG
10840139 AGTTTAACCA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.24
Consensus pattern (24 bp):
TTAGCTCATACGAGCCCAGATAGG
Found at i:10846553 original size:11 final size:11
Alignment explanation
Indices: 10846537--10846562 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
10846527 ACTTCGTCCT
10846537 ATTTAATTTTA
1 ATTTAATTTTA
10846548 ATTTAATTTTA
1 ATTTAATTTTA
10846559 ATTT
1 ATTT
10846563 TTCCCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTAATTTTA
Found at i:10846590 original size:19 final size:18
Alignment explanation
Indices: 10846538--10846592 Score: 58
Period size: 19 Copynumber: 3.0 Consensus size: 18
10846528 CTTCGTCCTA
10846538 TTTAA-TTTTAATTTAAT
1 TTTAATTTTTAATTTAAT
**
10846555 TTTAATTTTTCCCTTTAAT
1 TTTAATTTTT-AATTTAAT
*
10846574 TTTGTATTTTTAATTTAAT
1 TTT-AATTTTTAATTTAAT
10846593 CCTTCGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 5 0.17
18 4 0.13
19 15 0.50
20 6 0.20
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTAATTTTTAATTTAAT
Found at i:10846679 original size:5 final size:5
Alignment explanation
Indices: 10846669--10846707 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
10846659 TCCTTGTAAT
* *
10846669 TTTTA TTTTA TTTTA ATTTA GTTCTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA TTTTA TTT
10846708 CTTTTTCTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 26 0.90
6 3 0.10
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:10846698 original size:16 final size:16
Alignment explanation
Indices: 10846677--10846720 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
10846667 ATTTTTATTT
10846677 TATTTTAATTTAGTTC
1 TATTTTAATTTAGTTC
* *
10846693 TATTTTATTTTATTTC
1 TATTTTAATTTAGTTC
*
10846709 TTTTTCTAATTT
1 TATTT-TAATTT
10846721 GTACCTTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (16 bp):
TATTTTAATTTAGTTC
Found at i:10846737 original size:30 final size:30
Alignment explanation
Indices: 10846696--10846763 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
10846686 TTAGTTCTAT
*
10846696 TTTATTTTATTTCT-TTTTCTAATTT-GTACC
1 TTTAATTTATTTCTGTTTTC-AATTTAGT-CC
*
10846726 TTTAATTTATTTGTGTTTTCAATTTAGTCC
1 TTTAATTTATTTCTGTTTTCAATTTAGTCC
10846756 TTT-ATTTA
1 TTTAATTTA
10846764 ATTTTGCCTC
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 5 0.15
30 22 0.65
31 7 0.21
ACGTcount: A:0.19, C:0.10, G:0.06, T:0.65
Consensus pattern (30 bp):
TTTAATTTATTTCTGTTTTCAATTTAGTCC
Found at i:10849574 original size:54 final size:55
Alignment explanation
Indices: 10849498--10849619 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 55
10849488 ATTTGGATTG
* * *
10849498 AATCGATTGTTATGCTGAAATATTACTTCATTTGAATCAATT-TTTTTATGTTTA
1 AATCGATTGTCATGCTGAAATATTACTTCATTTGAATCAATTGTTTATATATTTA
* * * * **
10849552 AATCGATTGTCATGTTGGAATATTGCTTCTTTTGAATTGATTGTTTATATATTTA
1 AATCGATTGTCATGCTGAAATATTACTTCATTTGAATCAATTGTTTATATATTTA
*
10849607 AATCAATTGTCAT
1 AATCGATTGTCAT
10849620 ATTAAAATAC
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
54 35 0.61
55 22 0.39
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (55 bp):
AATCGATTGTCATGCTGAAATATTACTTCATTTGAATCAATTGTTTATATATTTA
Found at i:10850973 original size:34 final size:34
Alignment explanation
Indices: 10850935--10851013 Score: 113
Period size: 34 Copynumber: 2.3 Consensus size: 34
10850925 ATATATAAAT
* *
10850935 AATCGATTCAAAAGAAGCAGTATTCCAACATGAC
1 AATCGATTCAAAAGAAGCAATATTCCAACATAAC
* *
10850969 AATCGATTCAAAAGAAGCAATATTCTAGCATAAC
1 AATCGATTCAAAAGAAGCAATATTCCAACATAAC
*
10851003 AAACGATTCAA
1 AATCGATTCAA
10851014 TCCAAATTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.22
Consensus pattern (34 bp):
AATCGATTCAAAAGAAGCAATATTCCAACATAAC
Found at i:10851800 original size:11 final size:11
Alignment explanation
Indices: 10851760--10851802 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
10851750 ATAAAAAATT
10851760 ATTATTTTAATA
1 ATTA-TTTAATA
* *
10851772 AATATTAAATA
1 ATTATTTAATA
*
10851783 ATTATTTAATT
1 ATTATTTAATA
10851794 ATTATTTAA
1 ATTATTTAA
10851803 CAAAAATATC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 23 0.88
12 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTATTTAATA
Found at i:10854165 original size:2 final size:2
Alignment explanation
Indices: 10854158--10854189 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10854148 TCACAGCTTT
10854158 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10854190 TGGAGAGAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10858363 original size:54 final size:56
Alignment explanation
Indices: 10858281--10858413 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
10858271 TCTACATAAA
* * * *
10858281 AGTATTTCAACATGACAATTGATTTAAATATATAAA-AATATATTCAAAAGAAGC-
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
*
10858335 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATCGATTCAAAAGAAGCT
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
* *
10858391 A-TATTCCATCATAACAATCGATT
1 AGTATTCCAACATGACAATCGATT
10858414 CAATCCAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.29
Consensus pattern (56 bp):
AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
Found at i:10865362 original size:54 final size:56
Alignment explanation
Indices: 10865280--10865412 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
10865270 TCTACATAAA
* * * *
10865280 AGTATTTCAACATGACAATTGATTTAAATATATAAA-AATATATTCAAAAGAAGC-
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
*
10865334 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATCGATTCAAAAGAAGCT
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
* *
10865390 A-TATTCCATCATAACAATCGATT
1 AGTATTCCAACATGACAATCGATT
10865413 CAATCCAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.29
Consensus pattern (56 bp):
AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
Found at i:10868498 original size:54 final size:56
Alignment explanation
Indices: 10868416--10868548 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
10868406 TCTACATAAA
* * * *
10868416 AGTATTTCAACATGACAATTGATTTAAATATATAAA-AATATATTCAAAAGAAGC-
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
*
10868470 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATCGATTCAAAAGAAGCT
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
* *
10868526 A-TATTCCATCATAACAATCGATT
1 AGTATTCCAACATGACAATCGATT
10868549 CAATCCAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.29
Consensus pattern (56 bp):
AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
Found at i:10871624 original size:54 final size:56
Alignment explanation
Indices: 10871542--10871674 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
10871532 TCTACATAAA
* * * *
10871542 AGTATTTCAACATGACAATTGATTTAAATATATAAA-AATATATTCAAAAGAAGC-
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
*
10871596 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATCGATTCAAAAGAAGCT
1 AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
* *
10871652 A-TATTCCATCATAACAATCGATT
1 AGTATTCCAACATGACAATCGATT
10871675 CAATCCAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.29
Consensus pattern (56 bp):
AGTATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCT
Found at i:10872466 original size:19 final size:19
Alignment explanation
Indices: 10872429--10872467 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10872419 ATAGTACTTA
*
10872429 TAAAATATTATTATTTTAT
1 TAAAATATTATAATTTTAT
10872448 TAAAATATTA-AATTATTAT
1 TAAAATATTATAATT-TTAT
10872467 T
1 T
10872468 TAACACAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAAAATATTATAATTTTAT
Found at i:10875809 original size:53 final size:55
Alignment explanation
Indices: 10875733--10875864 Score: 171
Period size: 53 Copynumber: 2.4 Consensus size: 55
10875723 CTACATAAAA
* * *
10875733 GTATTTCAACATGACAATTGATTTAAATATATAAAAA-TAT-ATTCAAAAGAAGC-
1 GTATTCCAACATGACAATCGATTTAAA-ATATAAAAACAATCATTCAAAAGAAGCT
10875786 GTATTCCAACATGACAATCGATTTAAAATATAAAAACAATCGATTCAAAAGAAGCT
1 GTATTCCAACATGACAATCGATTTAAAATATAAAAACAATC-ATTCAAAAGAAGCT
* * *
10875842 ATATTCCATCATAACAATCGATT
1 GTATTCCAACATGACAATCGATT
10875865 CAATCCAGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
52 9 0.13
53 27 0.39
55 13 0.19
56 20 0.29
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (55 bp):
GTATTCCAACATGACAATCGATTTAAAATATAAAAACAATCATTCAAAAGAAGCT
Found at i:10880943 original size:28 final size:26
Alignment explanation
Indices: 10880840--10880943 Score: 75
Period size: 28 Copynumber: 3.8 Consensus size: 26
10880830 TTTGGATACC
*
10880840 CGGGGGCAAAATGGTAATTTTGGACTTT
1 CGGGGGCAAAATGGT-ATTTTGGA-ATT
* *
10880868 CGAGGGCAAAATGGTAGTTTTGGTGAAAT
1 CGGGGGCAAAATGGTA-TTTT-G-GAATT
** * *
10880897 C-GGGTAAAAATTGAATTTTGGAAGGTT
1 CGGGGGCAAAATGGTATTTTGGAA--TT
10880924 CGGGGGCAAAATGGTATTTT
1 CGGGGGCAAAATGGTATTTT
10880944 TTGGTGAAAT
Statistics
Matches: 57, Mismatches: 13, Indels: 12
0.70 0.16 0.15
Matches are distributed among these distances:
25 3 0.05
26 1 0.02
27 7 0.12
28 41 0.72
29 3 0.05
30 2 0.04
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (26 bp):
CGGGGGCAAAATGGTATTTTGGAATT
Found at i:10881004 original size:30 final size:30
Alignment explanation
Indices: 10880910--10881098 Score: 115
Period size: 30 Copynumber: 6.3 Consensus size: 30
10880900 GTAAAAATTG
*
10880910 AATTTTGGAAGGTTCGGGGG-CAAAATGGTA
1 AATTTTGGAAAGTTCGGGGGTCAAAAT-GTA
** *
10880940 TTTTTTGGTGAAA--TC-GAGGTCAAAAATG-A
1 AATTTT-G-GAAAGTTCGGGGGTC-AAAATGTA
10880969 AATTTTGGAAAGTTCGGGGGT-AAAATGGTA
1 AATTTTGGAAAGTTCGGGGGTCAAAAT-GTA
**
10880999 AATTTTGGAAAAGTTTAGGGGTCAAAATGT-
1 AATTTTGG-AAAGTTCGGGGGTCAAAATGTA
*** *
10881029 AATTTTGGAAAAGTTTTAGGGTCAAAGTGT-
1 AATTTTGG-AAAGTTCGGGGGTCAAAATGTA
* ** *
10881059 AATTTTAGAAAAGTTTTGGGGTTAAAATGTA
1 AATTTT-GGAAAGTTCGGGGGTCAAAATGTA
*
10881090 ATTTTTGGA
1 AATTTTGGA
10881099 CTATTTGGGG
Statistics
Matches: 128, Mismatches: 18, Indels: 26
0.74 0.10 0.15
Matches are distributed among these distances:
27 4 0.03
28 6 0.05
29 11 0.09
30 74 0.58
31 25 0.20
32 8 0.06
ACGTcount: A:0.34, C:0.04, G:0.28, T:0.34
Consensus pattern (30 bp):
AATTTTGGAAAGTTCGGGGGTCAAAATGTA
Found at i:10881005 original size:59 final size:57
Alignment explanation
Indices: 10880866--10881006 Score: 187
Period size: 59 Copynumber: 2.5 Consensus size: 57
10880856 ATTTTGGACT
* * *
10880866 TTCGAGGGCAAAATGGT-AGTTTTGGTGAAATCGGGTAAAAATTGAATTTTGGAAGG
1 TTCGGGGGCAAAATGGTAAATTTTGGTGAAATCGGGTAAAAATTGAATTTTGGAAAG
**
10880922 TTCGGGGGCAAAATGGTATTTTTTGGTGAAATCGAGGTCAAAAA-TGAAATTTTGGAAAG
1 TTCGGGGGCAAAATGGTAAATTTTGGTGAAATCG-GGT-AAAAATTG-AATTTTGGAAAG
*
10880981 TTCGGGGGTAAAATGGTAAATTTTGG
1 TTCGGGGGCAAAATGGTAAATTTTGG
10881007 AAAAGTTTAG
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
56 16 0.22
57 14 0.19
58 5 0.07
59 39 0.53
ACGTcount: A:0.32, C:0.06, G:0.31, T:0.31
Consensus pattern (57 bp):
TTCGGGGGCAAAATGGTAAATTTTGGTGAAATCGGGTAAAAATTGAATTTTGGAAAG
Found at i:10881020 original size:31 final size:30
Alignment explanation
Indices: 10880962--10881098 Score: 140
Period size: 30 Copynumber: 4.6 Consensus size: 30
10880952 ATCGAGGTCA
**
10880962 AAAATG-AAATTTTGG-AAAGTTCGGGGGT
1 AAAATGTAAATTTTGGAAAAGTTTAGGGGT
10880990 AAAATGGTAAATTTTGGAAAAGTTTAGGGGT
1 AAAAT-GTAAATTTTGGAAAAGTTTAGGGGT
10881021 CAAAATGT-AATTTTGGAAAAGTTTTA-GGGT
1 -AAAATGTAAATTTTGGAAAAG-TTTAGGGGT
* * *
10881051 CAAAGTGT-AATTTTAGAAAAGTTTTGGGGTT
1 -AAAATGTAAATTTTGGAAAAGTTTAGGGG-T
*
10881082 AAAATGTAATTTTTGGA
1 AAAATGTAAATTTTGGA
10881099 CTATTTGGGG
Statistics
Matches: 93, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
28 5 0.05
29 4 0.04
30 54 0.58
31 25 0.27
32 5 0.05
ACGTcount: A:0.36, C:0.02, G:0.26, T:0.35
Consensus pattern (30 bp):
AAAATGTAAATTTTGGAAAAGTTTAGGGGT
Found at i:10881616 original size:28 final size:29
Alignment explanation
Indices: 10881570--10881624 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
10881560 AAAAGAACTT
10881570 TCTCTTCCCCCTTTCTTTC-TCTCCTTAC
1 TCTCTTCCCCCTTTCTTTCTTCTCCTTAC
*
10881598 TCTCTTCTTCCCTTT-TTTCTTCTCCTT
1 TCTCTTC-CCCCTTTCTTTCTTCTCCTT
10881625 GGCCGGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.02, C:0.42, G:0.00, T:0.56
Consensus pattern (29 bp):
TCTCTTCCCCCTTTCTTTCTTCTCCTTAC
Found at i:10882994 original size:6 final size:6
Alignment explanation
Indices: 10882977--10883028 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
10882967 TAAATTCAAG
* * * * *
10882977 TTAAAT TCAAAT TTAAAT TTAAAA TTGAAT TTAAA- ATAAAT TTAAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
10883024 TTAAA
1 TTAAA
10883029 ATAATTTTAA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (6 bp):
TTAAAT
Found at i:10883007 original size:12 final size:12
Alignment explanation
Indices: 10882977--10883028 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
10882967 TAAATTCAAG
* *
10882977 TTAAATTCAAAT
1 TTAAATTTAAAA
10882989 TTAAATTTAAAA
1 TTAAATTTAAAA
*
10883001 TTGAATTTAAAA
1 TTAAATTTAAAA
10883013 -TAAATTTAAAA
1 TTAAATTTAAAA
10883024 TTAAA
1 TTAAA
10883029 ATAATTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
11 10 0.29
12 25 0.71
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:10883020 original size:11 final size:11
Alignment explanation
Indices: 10882990--10883024 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
10882980 AATTCAAATT
10882990 TAAATTTAAAA
1 TAAATTTAAAA
*
10883001 TTGAATTTAAAA
1 -TAAATTTAAAA
10883013 TAAATTTAAAA
1 TAAATTTAAAA
10883024 T
1 T
10883025 TAAAATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:10883917 original size:93 final size:93
Alignment explanation
Indices: 10883369--10884376 Score: 867
Period size: 93 Copynumber: 10.9 Consensus size: 93
10883359 CATCTTACTC
* * * * *
10883369 TTACTTCAATTTC-AGAGG-GACGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
* ** * *
10883431 CAGAGGGACGAAGGCTTGATATCCAGCT
66 CAGAGAGATAAAGACTTGATATCCAACT
* * * * *
10883459 CTACTTCAATTTCAAGAGGATAGGAAAA-GATG-TCGGTGCTTCATCTTGCTCTTACTTCAATTT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
* * *
10883522 CAGAGAGACAAAGGCTTGATATCCAGCT
66 CAGAGAGATAAAGACTTGATATCCAACT
* *
10883550 CTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTG-TTTCATCTTA-CTCTTACTTCAAT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTT-ATC-TAGCTCTTACTTCAAT
* *
10883612 TTCAGAGAGACAAAGGCTTGATATCCAACT
64 TTCAGAGAGATAAAGACTTGATATCCAACT
* * * *
10883642 CTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
* ** * *
10883706 CAGAGGGACGAAGGCTTGATATCCAGCT
66 CAGAGAGATAAAGACTTGATATCCAACT
* * * *
10883734 CTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
* ** * * *
10883798 CAGAGGGACGAAGGCTTGTTATCCAGCT
66 CAGAGAGATAAAGACTTGATATCCAACT
10883826 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
1 TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
*
10883891 CAGAGAGATAAAGACTTGATATCCAGCT
66 CAGAGAGATAAAGACTTGATATCCAACT
* *
10883919 CTACTTCAATTTCAAGAGGATAGGATAGGAAAATGATGTTTGATGCCTTATCTAGCTCTTACTTC
1 TTACTTCAATTTC-A-A-G--AGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTC
* * *
10883984 AACTTCAGTGAGATAAAGA-TTCATTATCCAACT
61 AATTTCAGAGAGATAAAGACTTGA-TATCCAACT
* ** *
10884017 TTACTAT-AACTTCAAGAGGATA--AAAATCTGACATTTGAAGCTTTATCTTA-CTCTTACTAT-
1 TTACT-TCAATTTCAAGAGGATAGGAAAA--TGATGTTTGATGCTTTATC-TAGCTCTTACT-TC
* *
10884077 AACTTCAGAGAGATAAAGA-TTCATTATCCAACT
61 AATTTCAGAGAGATAAAGACTTGA-TATCCAACT
* * ** *
10884110 TTACTAT-AACTTCAAGATGATA--AAAATCTGACATTTGAAGCTTTATCTTA-CTCTTACTAT-
1 TTACT-TCAATTTCAAGAGGATAGGAAAA--TGATGTTTGATGCTTTATC-TAGCTCTTACT-TC
* *
10884170 AACTTCAGAGAGATAAAGA-TTCATTATCCAACT
61 AATTTCAGAGAGATAAAGACTTGA-TATCCAACT
* ** *
10884203 TTACTAT-AACTTCAAGAGGATA--AAAATTTGACATTTGAAGCTTTATCTTA-CTCTTACTAT-
1 TTACT-TCAATTTCAAGAGGATAGGAAAA--TGATGTTTGATGCTTTATC-TAGCTCTTACT-TC
* *
10884263 AACTTCAGAGAGATAAAGA-TTCATTATCCAACT
61 AATTTCAGAGAGATAAAGACTTGA-TATCCAACT
* ** * * *
10884296 TTACTAT-AACTTCAAGAGGATA--AAAATTGACATTTAAAGCTTTATCTTGCTCTTACTAT-AA
1 TTACT-TCAATTTCAAGAGGATAGGAAAA-TGATGTTTGATGCTTTATCTAGCTCTTACT-TCAA
*
10884357 CTTCAGAGAGATAAAGACTT
63 TTTCAGAGAGATAAAGACTT
10884377 TTCCCTTTTG
Statistics
Matches: 854, Mismatches: 43, Indels: 39
0.91 0.05 0.04
Matches are distributed among these distances:
90 12 0.01
91 101 0.12
92 313 0.37
93 338 0.40
94 4 0.00
95 2 0.00
96 2 0.00
97 4 0.00
98 77 0.09
99 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (93 bp):
TTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTT
CAGAGAGATAAAGACTTGATATCCAACT
Found at i:10884002 original size:98 final size:92
Alignment explanation
Indices: 10883370--10884001 Score: 948
Period size: 92 Copynumber: 6.8 Consensus size: 92
10883360 ATCTTACTCT
* *
10883370 TACTTCAATTTC-AGAGG-GACGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* *
10883433 GAGGGACGAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
*
10883460 TACTTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
10883524 GAGAGACAAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
* *
10883551 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGTTTCATCTTACTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
*
10883616 GAGAGACAAAGGCTTGATATCCAACTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
10883643 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* *
10883708 GAGGGACGAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
10883735 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* * * *
10883800 GAGGGACGAAGGCTTGTTATCCAGCTT
66 GAGAGACAAAGGCTTGATATCCAGCTC
* * *
10883827 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTC
1 TACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTTC
* *
10883892 AGAGAGATAAAGACTTGATATCCAGCTC
65 AGAGAGACAAAGGCTTGATATCCAGCTC
* *
10883920 TACTTCAATTTCAAGAGGATAGGATAGGAAAATGATGTTTGATGCCTT-ATCTAGCTCTTACTTC
1 TACTTCAATTTC-A-A-G--AGGATAGGAAAATGATG-TTGGTG-CTTCATCTTGCTCTTACTTC
* * *
10883984 AACTTCAGTGAGATAAAG
59 AATTTCAGAGAGACAAAG
10884002 ATTCATTATC
Statistics
Matches: 505, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
90 12 0.02
91 93 0.18
92 275 0.54
93 63 0.12
94 1 0.00
95 1 0.00
96 1 0.00
98 56 0.11
99 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (92 bp):
TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
GAGAGACAAAGGCTTGATATCCAGCTC
Found at i:10884092 original size:53 final size:51
Alignment explanation
Indices: 10884017--10884371 Score: 253
Period size: 40 Copynumber: 7.5 Consensus size: 51
10884007 TTATCCAACT
10884017 TTACTATAACTTCAAGAGGATAAAAATCTGACATTTGAAGCTTTATCTTACTC
1 TTACTATAACTTCAAGAGGATAAAAAT-TGACATTT-AAGCTTTATCTTACTC
* **
10884070 TTACTATAACTTC-AGAGAGAT--AAA--G--A-TT---CATTATCCAACT-
1 TTACTATAACTTCAAGAG-GATAAAAATTGACATTTAAGCTTTATCTTACTC
*
10884110 TTACTATAACTTCAAGATGATAAAAATCTGACATTTGAAGCTTTATCTTACTC
1 TTACTATAACTTCAAGAGGATAAAAAT-TGACATTT-AAGCTTTATCTTACTC
* **
10884163 TTACTATAACTTC-AGAGAGAT--AAA--G--A-TT---CATTATCCAACT-
1 TTACTATAACTTCAAGAG-GATAAAAATTGACATTTAAGCTTTATCTTACTC
10884203 TTACTATAACTTCAAGAGGATAAAAATTTGACATTTGAAGCTTTATCTTACTC
1 TTACTATAACTTCAAGAGGATAAAAA-TTGACATTT-AAGCTTTATCTTACTC
* **
10884256 TTACTATAACTTC-AGAGAGAT--AAA--G--A-TT---CATTATCCAACT-
1 TTACTATAACTTCAAGAG-GATAAAAATTGACATTTAAGCTTTATCTTACTC
*
10884296 TTACTATAACTTCAAGAGGATAAAAATTGACATTTAAAGCTTTATCTTGCTC
1 TTACTATAACTTCAAGAGGATAAAAATTGACATTT-AAGCTTTATCTTACTC
10884348 TTACTATAACTTC-AGAGAGATAAA
1 TTACTATAACTTCAAGAG-GATAAA
10884372 GACTTTTCCC
Statistics
Matches: 236, Mismatches: 21, Indels: 91
0.68 0.06 0.26
Matches are distributed among these distances:
40 48 0.20
41 38 0.16
42 9 0.04
44 1 0.00
45 8 0.03
46 4 0.02
47 4 0.02
48 7 0.03
51 21 0.09
52 48 0.20
53 48 0.20
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (51 bp):
TTACTATAACTTCAAGAGGATAAAAATTGACATTTAAGCTTTATCTTACTC
Found at i:10884464 original size:51 final size:50
Alignment explanation
Indices: 10884409--10884557 Score: 144
Period size: 50 Copynumber: 3.0 Consensus size: 50
10884399 ACTGGATCTG
*
10884409 CCGTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGGTTCA
1 CCGTTGCGGTCTTAGATCTTTCCCGTC-TGTCTTTTGAGGTACACGGTCCA
* * * * *
10884460 CCGTTGC-GACTTAGACCTTTCCCTTTTCTGT-TTTTGCGGTACTA-GATCCA
1 CCGTTGCGGTCTTAGATCTTTCCC--GTCTGTCTTTTGAGGTAC-ACGGTCCA
* * *
10884510 CCATTGCGGTCTTAGATCTATCCCGTCATG-CTTCTGAGGTACACGGTC
1 CCGTTGCGGTCTTAGATCTTTCCCGTC-TGTCTTTTGAGGTACACGGTC
10884558 TGCCATTGTG
Statistics
Matches: 77, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
49 3 0.04
50 48 0.62
51 24 0.31
52 2 0.03
ACGTcount: A:0.14, C:0.28, G:0.22, T:0.36
Consensus pattern (50 bp):
CCGTTGCGGTCTTAGATCTTTCCCGTCTGTCTTTTGAGGTACACGGTCCA
Found at i:10884517 original size:50 final size:50
Alignment explanation
Indices: 10884371--10884517 Score: 120
Period size: 50 Copynumber: 2.9 Consensus size: 50
10884361 AGAGAGATAA
* * * * ** *
10884371 AGACTTTTCCCTTTTGTCTTTTTGCGGTACTGGATCTGCCGTTGCGGTCTT
1 AGACCTTTCCCTTTTCTGTTTTTGCGGTACTAGATCCACCGTTGC-GACTT
* * * * *
10884422 AGATCTTTCCC--GTCGTGTCTTTTGAGGTAC-ACGGTTCACCGTTGCGACTT
1 AGACCTTTCCCTTTTC-TGT-TTTTGCGGTACTA-GATCCACCGTTGCGACTT
*
10884472 AGACCTTTCCCTTTTCTGTTTTTGCGGTACTAGATCCACCATTGCG
1 AGACCTTTCCCTTTTCTGTTTTTGCGGTACTAGATCCACCGTTGCG
10884518 GTCTTAGATC
Statistics
Matches: 72, Mismatches: 18, Indels: 13
0.70 0.17 0.13
Matches are distributed among these distances:
49 1 0.01
50 37 0.51
51 32 0.44
52 2 0.03
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (50 bp):
AGACCTTTCCCTTTTCTGTTTTTGCGGTACTAGATCCACCGTTGCGACTT
Found at i:10885901 original size:25 final size:23
Alignment explanation
Indices: 10885864--10885915 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
10885854 TTTCTTTTTC
* *
10885864 TTTTTCTCTTTTTTGTTTTTTGTTT
1 TTTTTCTC-CTTTT-TTATTTGTTT
10885889 TTTTTCTCCTTTTTTATTTGTTT
1 TTTTTCTCCTTTTTTATTTGTTT
10885912 TTTT
1 TTTT
10885916 CTTCATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 13 0.52
24 4 0.16
25 8 0.32
ACGTcount: A:0.02, C:0.10, G:0.06, T:0.83
Consensus pattern (23 bp):
TTTTTCTCCTTTTTTATTTGTTT
Found at i:10885915 original size:22 final size:21
Alignment explanation
Indices: 10885848--10885917 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
10885838 CACCTCGACC
* *
10885848 TCTCCTTTTCTTTTTCTTTTTC
1 TCTCCTTTT-TTTTTGTTTTTT
**
10885870 TCTTTTTTGTTTTTTGTTTTTTT
1 TCTCCTTT-TTTTTTG-TTTTTT
10885893 TCTCCTTTTTTATTTGTTTTTT
1 TCTCCTTTTTT-TTTGTTTTTT
10885915 TCT
1 TCT
10885918 TCATTGTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 23 0.59
23 16 0.41
ACGTcount: A:0.01, C:0.16, G:0.04, T:0.79
Consensus pattern (21 bp):
TCTCCTTTTTTTTTGTTTTTT
Found at i:10886777 original size:10 final size:10
Alignment explanation
Indices: 10886762--10886808 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
10886752 ACCCATCTCT
10886762 TTTTTTTTGA
1 TTTTTTTTGA
10886772 TTTTTTTTGA
1 TTTTTTTTGA
*
10886782 CTTTTTTT-A
1 TTTTTTTTGA
**
10886791 TTTGATTTGA
1 TTTTTTTTGA
10886801 TTTTTTTT
1 TTTTTTTT
10886809 CACACGTCGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 6 0.20
10 24 0.80
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.79
Consensus pattern (10 bp):
TTTTTTTTGA
Found at i:10886807 original size:19 final size:20
Alignment explanation
Indices: 10886762--10886808 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
10886752 ACCCATCTCT
**
10886762 TTTTTTTTGATTTTTTTTGA
1 TTTTTTTTGATTTGATTTGA
*
10886782 CTTTTTTT-ATTTGATTTGA
1 TTTTTTTTGATTTGATTTGA
10886801 TTTTTTTT
1 TTTTTTTT
10886809 CACACGTCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.79
Consensus pattern (20 bp):
TTTTTTTTGATTTGATTTGA
Found at i:10890424 original size:28 final size:28
Alignment explanation
Indices: 10890392--10890454 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
10890382 AAAACGGGAC
*
10890392 TTTTGGA-TACCCGGGGGCAAAATGGTAA
1 TTTTGGACT-CCCGAGGGCAAAATGGTAA
** *
10890420 TTTTGGACTTTCGAGGGCAAAATTGTAA
1 TTTTGGACTCCCGAGGGCAAAATGGTAA
10890448 TTTTGGA
1 TTTTGGA
10890455 GAAATCAGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (28 bp):
TTTTGGACTCCCGAGGGCAAAATGGTAA
Found at i:10890464 original size:28 final size:28
Alignment explanation
Indices: 10890406--10890783 Score: 96
Period size: 30 Copynumber: 12.9 Consensus size: 28
10890396 GGATACCCGG
* ***
10890406 GGGCAAAATGGTAATTTTGGACTTTCGA
1 GGGCAAAATTGTAATTTTGGAAAATCGA
10890434 GGGCAAAATTGTAATTTTGGAGAAATC-A
1 GGGCAAAATTGTAATTTTGGA-AAATCGA
* * *
10890462 GGGCTAAAATTGTAACTTTGGAAAGTTCGGG
1 GGGC-AAAATTGTAATTTTGGAAA-ATC-GA
* * *
10890493 GGGTAAAATGGTAAATTTTGGCAAAACCGA
1 GGGCAAAATTGT-AATTTTGG-AAAATCGA
** **** * *
10890523 GGTTAAAAACAAAATTTTGGAAAGTTCGG
1 GGGCAAAATTGTAATTTTGGAAA-ATCGA
* * *
10890552 GGGTAAAATGGTAAATTTTGGTGAAATCGA
1 GGGCAAAATTGT-AATTTTGG-AAAATCGA
** * * ** *
10890582 GGTTAAAAATGGAATTTTGGAAGGTTCAA
1 GGGCAAAATTGTAATTTTGGAA-AATCGA
* *
10890611 GGGCAAAATGGTAATTTTTGGTGAAATCG-
1 GGGCAAAATTGTAA-TTTTGG-AAAATCGA
* * * ** *
10890640 GGGTTAAAAATGGAATTTTGGAAGGTTCGG
1 GGG-CAAAATTGTAATTTTGGAA-AATCGA
* * *
10890670 GGGCAAAATGGTAATTTTTGATGAAACCGA
1 GGGCAAAATTGTAATTTTGGA--AAATCGA
** * * * * *
10890700 GGTTAAAAATGAAATTTTGGAAAGTTTGG
1 GGGCAAAATTGTAATTTTGGAAA-ATCGA
* * **
10890729 GGGTAAAATGGTAAATTTTGGAAAAGTTTA
1 GGGCAAAATTGT-AATTTTGGAAAA-TCGA
10890759 GGGGTCAAAA-TGTAATTTTGGAAAA
1 -GGG-CAAAATTGTAATTTTGGAAAA
10890784 GTTTTAGGGT
Statistics
Matches: 246, Mismatches: 81, Indels: 44
0.66 0.22 0.12
Matches are distributed among these distances:
28 34 0.14
29 91 0.37
30 94 0.38
31 20 0.08
32 7 0.03
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.30
Consensus pattern (28 bp):
GGGCAAAATTGTAATTTTGGAAAATCGA
Found at i:10890530 original size:30 final size:29
Alignment explanation
Indices: 10890410--10890753 Score: 109
Period size: 29 Copynumber: 11.7 Consensus size: 29
10890400 ACCCGGGGGC
*** **
10890410 AAAATGGT-AATTTTGGACTTTCGAGGGC
1 AAAATGGTAAATTTTGGAAAATCGAGGTT
* *
10890438 AAAATTGT-AATTTTGGAGAAATC-AGGGCT
1 AAAATGGTAAATTTTGGA-AAATCGA-GGTT
* * * * *
10890467 AAAATTGT-AACTTTGGAAAGTTCGGGGGGT
1 AAAATGGTAAATTTTGGAAA-ATC-GAGGTT
*
10890497 AAAATGGTAAATTTTGGCAAAACCGAGGTT
1 AAAATGGTAAATTTTGG-AAAATCGAGGTT
*** * * *
10890527 AAAA-ACAAAATTTTGGAAAGTTCGGGGGT
1 AAAATGGTAAATTTTGGAAA-ATCGAGGTT
*
10890556 AAAATGGTAAATTTTGGTGAAATCGAGGTT
1 AAAATGGTAAATTTTGG-AAAATCGAGGTT
** * **
10890586 AAAAATGG--AATTTTGGAAGGTTCAAGGGC
1 -AAAATGGTAAATTTTGGAA-AATCGAGGTT
* * *
10890615 AAAATGGTAATTTTTGGTGAAATCGGGGTT
1 AAAATGGTAAATTTTGG-AAAATCGAGGTT
** * **
10890645 AAAAATGG--AATTTTGGAAGGTTCGGGGGC
1 -AAAATGGTAAATTTTGGAA-AATCGAGGTT
* *
10890674 AAAATGGT-AATTTTTGATGAAACCGAGGTT
1 AAAATGGTAAATTTTGGA--AAATCGAGGTT
* * * *
10890704 AAAAAT-G-AAATTTTGGAAAGTTTGGGGGT
1 -AAAATGGTAAATTTTGGAAA-ATCGAGGTT
10890733 AAAATGGTAAATTTTGGAAAA
1 AAAATGGTAAATTTTGGAAAA
10890754 GTTTAGGGGT
Statistics
Matches: 227, Mismatches: 64, Indels: 49
0.67 0.19 0.14
Matches are distributed among these distances:
28 45 0.20
29 79 0.35
30 69 0.30
31 31 0.14
32 3 0.01
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (29 bp):
AAAATGGTAAATTTTGGAAAATCGAGGTT
Found at i:10890583 original size:59 final size:59
Alignment explanation
Indices: 10890478--10890749 Score: 364
Period size: 59 Copynumber: 4.6 Consensus size: 59
10890468 AAATTGTAAC
** **
10890478 TTTGGAAAGTTCGGGGGGTAAAATGGTAAATTTTGGCAAAACCGAGGTTAAAAACAAAAT
1 TTTGGAAAGTTC-GGGGGTAAAATGGTAAATTTTGGTGAAACCGAGGTTAAAAATGAAAT
* *
10890538 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAATCGAGGTTAAAAATGGAAT
1 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAACCGAGGTTAAAAATGAAAT
* ** * * * * *
10890597 TTTGGAAGGTTCAAGGGCAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAATGGAAT
1 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAACCGAGGTTAAAAATGAAAT
* * * *
10890656 TTTGGAAGGTTCGGGGGCAAAATGGTAATTTTTGATGAAACCGAGGTTAAAAATGAAAT
1 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAACCGAGGTTAAAAATGAAAT
*
10890715 TTTGGAAAGTTTGGGGGTAAAATGGTAAATTTTGG
1 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGG
10890750 AAAAGTTTAG
Statistics
Matches: 189, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
59 177 0.94
60 12 0.06
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (59 bp):
TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAACCGAGGTTAAAAATGAAAT
Found at i:10890706 original size:177 final size:177
Alignment explanation
Indices: 10890410--10890749 Score: 477
Period size: 177 Copynumber: 1.9 Consensus size: 177
10890400 ACCCGGGGGC
* * * * *
10890410 AAAATGGTAATTTTGGACTTTCGAGGGCAAAATTGTAATTTTGGAGAAATCAGGGCTAAAATTGT
1 AAAATGGTAATTTTGGACGTTCAAGGGCAAAATGGTAATTTTGGAGAAATCAGGGCTAAAAATGG
* *
10890475 AACTTTGGAAAGTTCGGGGGGTAAAATGGTAAATTTTGGCAAAACCGAGGTTAAAAACAAAATTT
66 AACTTTGGAAAGTTCGGGGGGCAAAATGGTAAATTTTGACAAAACCGAGGTTAAAAACAAAATTT
10890540 TGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAATCGAGGTTA
131 TGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAATCGAGGTTA
* * * *
10890587 AAAATGG-AATTTTGGAAGGTTCAAGGGCAAAATGGTAATTTTTGGTGAAATCGGGGTTAAAAAT
1 AAAATGGTAATTTTGG-ACGTTCAAGGGCAAAATGGTAA-TTTTGGAGAAATCAGGGCTAAAAAT
* * * ** **
10890651 GGAATTTTGGAAGGTTC-GGGGGCAAAATGGTAATTTTTGATGAAACCGAGGTTAAAAATGAAAT
64 GGAACTTTGGAAAGTTCGGGGGGCAAAATGGTAAATTTTGACAAAACCGAGGTTAAAAACAAAAT
*
10890715 TTTGGAAAGTTTGGGGGTAAAATGGTAAATTTTGG
129 TTTGGAAAGTTCGGGGGTAAAATGGTAAATTTTGG
10890750 AAAAGTTTAG
Statistics
Matches: 142, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
176 8 0.06
177 99 0.70
178 35 0.25
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.30
Consensus pattern (177 bp):
AAAATGGTAATTTTGGACGTTCAAGGGCAAAATGGTAATTTTGGAGAAATCAGGGCTAAAAATGG
AACTTTGGAAAGTTCGGGGGGCAAAATGGTAAATTTTGACAAAACCGAGGTTAAAAACAAAATTT
TGGAAAGTTCGGGGGTAAAATGGTAAATTTTGGTGAAATCGAGGTTA
Found at i:10890776 original size:30 final size:30
Alignment explanation
Indices: 10890705--10890840 Score: 163
Period size: 30 Copynumber: 4.5 Consensus size: 30
10890695 ACCGAGGTTA
* *
10890705 AAAATGAAATTTTGG-AAAGTTTGGGGGT-
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTC
10890733 AAAATGGTAAATTTTGGAAAAGTTTAGGGGTC
1 AAAAT-GT-AATTTTGGAAAAGTTTAGGGGTC
10890765 AAAATGTAATTTTGGAAAAGTTTTA-GGGTC
1 AAAATGTAATTTTGGAAAAG-TTTAGGGGTC
* * *
10890795 AAAGTGTAATTTTAGAAAAGTTT-TGGGTC
1 AAAATGTAATTTTGGAAAAGTTTAGGGGTC
10890824 AAAATGTAATTTCTGGA
1 AAAATGTAATTT-TGGA
10890841 CTATTTTGGG
Statistics
Matches: 95, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
28 5 0.05
29 20 0.21
30 47 0.49
31 18 0.19
32 5 0.05
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.35
Consensus pattern (30 bp):
AAAATGTAATTTTGGAAAAGTTTAGGGGTC
Found at i:10892763 original size:12 final size:12
Alignment explanation
Indices: 10892712--10892763 Score: 61
Period size: 12 Copynumber: 4.4 Consensus size: 12
10892702 TAAATTCAAG
* *
10892712 TTAAATTCAAAT
1 TTAAATTTAAAA
10892724 TTAAATTTAAAA
1 TTAAATTTAAAA
* *
10892736 TTGAATATAAAA
1 TTAAATTTAAAA
10892748 -TAAATTTAAAA
1 TTAAATTTAAAA
10892759 TTAAA
1 TTAAA
10892764 ATAATTTTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:10894734 original size:53 final size:55
Alignment explanation
Indices: 10894659--10894788 Score: 183
Period size: 53 Copynumber: 2.4 Consensus size: 55
10894649 TACATAAAAG
* * * *
10894659 TATTTCAACATGACAATTGATTTAAATATATAAA-AATATATTCAAAAGAAGC-A
1 TATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCTA
*
10894712 TATTCCAACATGACAATCGATTTAAATATAAAAACAATCGATTCAAAAGAAGCTA
1 TATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCTA
* *
10894767 TATTCCATCATAACAATCGATT
1 TATTCCAACATGACAATCGATT
10894789 CAATCCAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 31 0.46
54 16 0.24
55 21 0.31
ACGTcount: A:0.48, C:0.15, G:0.08, T:0.30
Consensus pattern (55 bp):
TATTCCAACATGACAATCGATTTAAATATAAAAACAATAGATTCAAAAGAAGCTA
Found at i:10895652 original size:12 final size:12
Alignment explanation
Indices: 10895620--10895681 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 12
10895610 TTAATTCAAG
* *
10895620 TTAAATTCAAAT
1 TTAAATTTAAAA
10895632 TTAAA-TTAAAA
1 TTAAATTTAAAA
*
10895643 TTGAATTTAAAA
1 TTAAATTTAAAA
10895655 -TAAATTTAAAA
1 TTAAATTTAAAA
10895666 -TAAA--TAAAA
1 TTAAATTTAAAA
10895675 -TAAATTT
1 TTAAATTT
10895682 TAATTTCAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 9 0.21
11 23 0.53
12 11 0.26
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (12 bp):
TTAAATTTAAAA
Found at i:10895660 original size:11 final size:11
Alignment explanation
Indices: 10895633--10895681 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
10895623 AATTCAAATT
10895633 TAAA-TTAAAA
1 TAAATTTAAAA
*
10895643 TTGAATTTAAAA
1 -TAAATTTAAAA
10895655 TAAATTTAAAA
1 TAAATTTAAAA
10895666 TAAA--TAAAA
1 TAAATTTAAAA
10895675 TAAATTT
1 TAAATTT
10895682 TAATTTCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 9 0.27
11 18 0.55
12 6 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (11 bp):
TAAATTTAAAA
Found at i:10896568 original size:93 final size:93
Alignment explanation
Indices: 10896009--10897018 Score: 871
Period size: 92 Copynumber: 10.9 Consensus size: 93
10895999 GCTTCATCTT
* * * * *
10896009 ACTCTTACTTCAATTTC-AGAGG-GACGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCA
1 ACTC-TACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCA
* ** *
10896071 ATTTCAGAGGGACGAAGGCTTGATATCCA
65 ATTTCAGAGAGATAAAGACTTGATATCCA
* * * * *
10896100 GCTCTACTTCAATTTCAAGAGGATAGGAAAA-GATG-TCGGTGCTTCATCTTGCTCTTACTTCAA
1 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
* *
10896163 TTTCAGAGAGACAAAGGCTTGATATCCA
66 TTTCAGAGAGATAAAGACTTGATATCCA
* *
10896191 GCTCTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTG-TTTCATCTTA-CTCTTACTTC
1 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTT-ATC-TAGCTCTTACTTC
* *
10896253 AATTTCAGAGAGACAAAGGCTTGATATCCA
64 AATTTCAGAGAGATAAAGACTTGATATCCA
* * *
10896283 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAA
1 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
* ** *
10896347 TTTCAGAGGGACGAAGGCTTGATATCCA
66 TTTCAGAGAGATAAAGACTTGATATCCA
* * * * *
10896375 GCTCTACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGGTTCATCTTGCTCTTACTTCAA
1 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
* ** * *
10896439 TTTCAGAGGGACGAAGGCTTGTTATCCA
66 TTTCAGAGAGATAAAGACTTGATATCCA
* *
10896467 GCTTTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
1 ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
10896532 TTTCAGAGAGATAAAGACTTGATATCCA
66 TTTCAGAGAGATAAAGACTTGATATCCA
* *
10896560 GCTCTACTTCAATTTCAAGAGGATAGGATAGGAAAATGATGTTTGATGCCTTATCTAGCTCTTAC
1 ACTCTACTTCAATTTC-A-A-G--AGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTAC
* * *
10896625 TTCAACTTCAGTGAGATAAAGA-TTCATTATCCA
61 TTCAATTTCAGAGAGATAAAGACTTGA-TATCCA
* * ** *
10896658 ACTTTACTAT-AACTTCAAGAGGATA--AAAATGACATTTGAAGCTTTATCTTA-CTCTTACTAT
1 ACTCTACT-TCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATC-TAGCTCTTACT-T
* *
10896719 -AACTTCAGAGAGATAAAGA-TTCATTATCCA
63 CAATTTCAGAGAGATAAAGACTTGA-TATCCA
* * * ** *
10896749 ACTTTACTAT-AACTTCAAGATGATA--AAAATCTGACATTTGAAGCTTTATCTTA-CTCTTACT
1 ACTCTACT-TCAATTTCAAGAGGATAGGAAAA--TGATGTTTGATGCTTTATC-TAGCTCTTACT
* *
10896810 AT-AACTTCAGAGAGATAAAGA-TTCATTATCCA
62 -TCAATTTCAGAGAGATAAAGACTTGA-TATCCA
* * ** *
10896842 ACTTTACTAT-AACTTCAAGAGGATA--AAAATTTGACATTTGAAGCTTTATCTTA-CTCTTACT
1 ACTCTACT-TCAATTTCAAGAGGATAGGAAAA--TGATGTTTGATGCTTTATC-TAGCTCTTACT
* *
10896903 AT-AACTTCAGAGAGATAAAGA-TTCATTATCCA
62 -TCAATTTCAGAGAGATAAAGACTTGA-TATCCA
* * ** * * *
10896935 ACTTTACTAT-AACTTCAAGAGGATA--AAAATTGACATTTAAAGCTTTATCTTGCTCTTACTAT
1 ACTCTACT-TCAATTTCAAGAGGATAGGAAAA-TGATGTTTGATGCTTTATCTAGCTCTTACT-T
*
10896997 -AACTTCAGAGAGATAAAGACTT
63 CAATTTCAGAGAGATAAAGACTT
10897019 TTCCCTTTTG
Statistics
Matches: 853, Mismatches: 45, Indels: 40
0.91 0.05 0.04
Matches are distributed among these distances:
90 12 0.01
91 184 0.22
92 315 0.37
93 255 0.30
94 1 0.00
95 2 0.00
96 2 0.00
97 4 0.00
98 77 0.09
99 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (93 bp):
ACTCTACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAA
TTTCAGAGAGATAAAGACTTGATATCCA
Found at i:10896646 original size:98 final size:92
Alignment explanation
Indices: 10896014--10896645 Score: 939
Period size: 92 Copynumber: 6.8 Consensus size: 92
10896004 ATCTTACTCT
* *
10896014 TACTTCAATTTC-AGAGG-GACGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* *
10896077 GAGGGACGAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
*
10896104 TACTTCAATTTCAAGAGGATAGGAAAA-GATGTCGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
10896168 GAGAGACAAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
* *
10896195 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGTTTCATCTTACTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
*
10896260 GAGAGACAAAGGCTTGATATCCAACTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
10896287 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* *
10896352 GAGGGACGAAGGCTTGATATCCAGCTC
66 GAGAGACAAAGGCTTGATATCCAGCTC
*
10896379 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGGTTCATCTTGCTCTTACTTCAATTTCA
1 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
* * * *
10896444 GAGGGACGAAGGCTTGTTATCCAGCTT
66 GAGAGACAAAGGCTTGATATCCAGCTC
* * *
10896471 TACTTCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATCTAGCTCTTACTTCAATTTC
1 TACTTCAATTTCAAGAGGATAGGAAAATGATG-TTGGTGCTTCATCTTGCTCTTACTTCAATTTC
* *
10896536 AGAGAGATAAAGACTTGATATCCAGCTC
65 AGAGAGACAAAGGCTTGATATCCAGCTC
* *
10896564 TACTTCAATTTCAAGAGGATAGGATAGGAAAATGATGTTTGATGCCTT-ATCTAGCTCTTACTTC
1 TACTTCAATTTC-A-A-G--AGGATAGGAAAATGATG-TTGGTG-CTTCATCTTGCTCTTACTTC
* * *
10896628 AACTTCAGTGAGATAAAG
59 AATTTCAGAGAGACAAAG
10896646 ATTCATTATC
Statistics
Matches: 503, Mismatches: 29, Indels: 12
0.92 0.05 0.02
Matches are distributed among these distances:
90 12 0.02
91 93 0.18
92 274 0.54
93 62 0.12
94 1 0.00
95 1 0.00
96 1 0.00
98 56 0.11
99 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (92 bp):
TACTTCAATTTCAAGAGGATAGGAAAATGATGTTGGTGCTTCATCTTGCTCTTACTTCAATTTCA
GAGAGACAAAGGCTTGATATCCAGCTC
Found at i:10896672 original size:40 final size:40
Alignment explanation
Indices: 10896628--10896961 Score: 181
Period size: 40 Copynumber: 7.4 Consensus size: 40
10896618 CTCTTACTTC
*
10896628 AACTTCAGTGAGATAAAGATTCATTATCCAACTTTACTAT
1 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
* **
10896668 AACTTCA-AGAGGATAAAAATGACATTTGAAGCTTTATCTTACTCTTACTAT
1 AACTTCAGAGA-GAT--AAA-G--A-TT----CATTATCCAACT-TTACTAT
10896719 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
1 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
* **
10896759 AACTTCA-AGATGATAAAAATCTGACATTTGAAGCTTTATCTTACTCTTACTAT
1 AACTTCAGAGA-GAT--AAA---G--A-TT----CATTATCCAACT-TTACTAT
10896812 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
1 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
* **
10896852 AACTTCA-AGAGGATAAAAATTTGACATTTGAAGCTTTATCTTACTCTTACTAT
1 AACTTCAGAGA-GAT--AAA---G--A-TT----CATTATCCAACT-TTACTAT
10896905 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
1 AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
10896945 AACTTCA-AGAGGATAAA
1 AACTTCAGAGA-GATAAA
10896962 AATTGACATT
Statistics
Matches: 231, Mismatches: 19, Indels: 88
0.68 0.06 0.26
Matches are distributed among these distances:
39 11 0.05
40 64 0.28
41 27 0.12
42 9 0.04
43 1 0.00
45 9 0.04
46 5 0.02
47 2 0.01
48 7 0.03
49 3 0.01
50 9 0.04
51 23 0.10
52 21 0.09
53 34 0.15
54 6 0.03
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (40 bp):
AACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTAT
Found at i:10896939 original size:186 final size:183
Alignment explanation
Indices: 10896460--10897015 Score: 730
Period size: 186 Copynumber: 3.0 Consensus size: 183
10896450 CGAAGGCTTG
* * ** *
10896460 TTATCCAGCTTTACT-TCAATTTCAAGAGGATAGGAAAATGATGTTTGATGCTTTATC-TAGCTC
1 TTATCCAACTTTACTAT-AACTTCAAGAGGATA--AAAATGACATTTGAAGCTTTATCTTA-CTC
* * * * *
10896523 TTACT-TCAATTTCAGAGAGATAAAGACTTGA-TATCCAGCTCTACT-TCAATTTCAAGAGGATA
62 TTACTAT-AACTTCAGAGAGATAAAGA-TTCATTATCCAACTTTACTAT-AACTTCAAGAGGAT-
* ** * * *
10896585 GGATAGGAAAATGATGTTTGATGCCTTATC-TAGCTCTTACT-TCAACTTCAGTGAGATAAAGAT
123 --A-A--AAATTGACATTTGAAGCTTTATCTTA-CTCTTACTAT-AACTTCAGAGAGATAAAGAT
10896648 TCA
181 TCA
10896651 TTATCCAACTTTACTATAACTTCAAGAGGATAAAAATGACATTTGAAGCTTTATCTTACTCTTAC
1 TTATCCAACTTTACTATAACTTCAAGAGGATAAAAATGACATTTGAAGCTTTATCTTACTCTTAC
*
10896716 TATAACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTATAACTTCAAGATGATAAAAATCT
66 TATAACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTATAACTTCAAGAGGATAAAAAT-T
10896781 GACATTTGAAGCTTTATCTTACTCTTACTATAACTTCAGAGAGATAAAGATTCA
130 GACATTTGAAGCTTTATCTTACTCTTACTATAACTTCAGAGAGATAAAGATTCA
10896835 TTATCCAACTTTACTATAACTTCAAGAGGATAAAAATTTGACATTTGAAGCTTTATCTTACTCTT
1 TTATCCAACTTTACTATAACTTCAAGAGGATAAAAA--TGACATTTGAAGCTTTATCTTACTCTT
10896900 ACTATAACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTATAACTTCAAGAGGATAAAAAT
64 ACTATAACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTATAACTTCAAGAGGATAAAAAT
* *
10896965 TGACATTTAAAGCTTTATCTTGCTCTTACTATAACTTCAGAGAGATAAAGA
129 TGACATTTGAAGCTTTATCTTACTCTTACTATAACTTCAGAGAGATAAAGA
10897016 CTTTTCCCTT
Statistics
Matches: 335, Mismatches: 20, Indels: 26
0.88 0.05 0.07
Matches are distributed among these distances:
183 3 0.01
184 81 0.24
185 53 0.16
186 92 0.27
188 3 0.01
189 70 0.21
190 4 0.01
191 28 0.08
192 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.35
Consensus pattern (183 bp):
TTATCCAACTTTACTATAACTTCAAGAGGATAAAAATGACATTTGAAGCTTTATCTTACTCTTAC
TATAACTTCAGAGAGATAAAGATTCATTATCCAACTTTACTATAACTTCAAGAGGATAAAAATTG
ACATTTGAAGCTTTATCTTACTCTTACTATAACTTCAGAGAGATAAAGATTCA
Found at i:10897105 original size:51 final size:50
Alignment explanation
Indices: 10897050--10897199 Score: 137
Period size: 50 Copynumber: 3.0 Consensus size: 50
10897040 TACTGGATCT
*
10897050 GCCGTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTTTGAGGTACACGGTTC
1 GCCGTTGCGGTCTTAGATCTTTCCCGTC-TGTCTTTTGAGGTACACGGTCC
* * * * *
10897101 GCCGTTGC-GACTTAGACCTTTCCCTTTTCTGT-TTTTGCGGTACTA-GATCC
1 GCCGTTGCGGTCTTAGATCTTTCCC--GTCTGTCTTTTGAGGTAC-ACGGTCC
* * * *
10897151 ACCATTGCGGTCTTAGATCTATCCCGTCATG-CTTCTGAGGTACACGGTC
1 GCCGTTGCGGTCTTAGATCTTTCCCGTC-TGTCTTTTGAGGTACACGGTC
10897200 TGCCATTGTG
Statistics
Matches: 77, Mismatches: 15, Indels: 15
0.72 0.14 0.14
Matches are distributed among these distances:
49 3 0.04
50 47 0.61
51 25 0.32
52 2 0.03
ACGTcount: A:0.13, C:0.27, G:0.23, T:0.36
Consensus pattern (50 bp):
GCCGTTGCGGTCTTAGATCTTTCCCGTCTGTCTTTTGAGGTACACGGTCC
Found at i:10897137 original size:50 final size:51
Alignment explanation
Indices: 10897013--10897143 Score: 126
Period size: 51 Copynumber: 2.6 Consensus size: 51
10897003 AGAGAGATAA
* * * * *
10897013 AGACTTTTCCCTTTTGTCTTTTTGCGGTACTGGATCTGCCGTTGCGGTCTT
1 AGACCTTTCCCTTTTCTGTTTTTGCGGTACCGGATCTGCCGTTGCGGACTT
* * * *
10897064 AGATCTTTCCC--GTCGTGTCTTTTGAGGTACACGGTTC-GCCGTTGC-GACTT
1 AGACCTTTCCCTTTTC-TGT-TTTTGCGGTAC-CGGATCTGCCGTTGCGGACTT
10897114 AGACCTTTCCCTTTTCTGTTTTTGCGGTAC
1 AGACCTTTCCCTTTTCTGTTTTTGCGGTAC
10897144 TAGATCCACC
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
49 1 0.02
50 26 0.41
51 30 0.48
52 6 0.10
ACGTcount: A:0.10, C:0.25, G:0.23, T:0.42
Consensus pattern (51 bp):
AGACCTTTCCCTTTTCTGTTTTTGCGGTACCGGATCTGCCGTTGCGGACTT
Found at i:10898544 original size:25 final size:23
Alignment explanation
Indices: 10898507--10898558 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
10898497 TTTCTTTTTC
* *
10898507 TTTTTCTCTTTTTTGTTTTTTGTTT
1 TTTTTCTC-CTTTT-TTATTTGTTT
10898532 TTTTTCTCCTTTTTTATTTGTTT
1 TTTTTCTCCTTTTTTATTTGTTT
10898555 TTTT
1 TTTT
10898559 CTTCATTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 13 0.52
24 4 0.16
25 8 0.32
ACGTcount: A:0.02, C:0.10, G:0.06, T:0.83
Consensus pattern (23 bp):
TTTTTCTCCTTTTTTATTTGTTT
Found at i:10898558 original size:22 final size:21
Alignment explanation
Indices: 10898491--10898560 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
10898481 CACCTCGACC
* *
10898491 TCTCCTTTTCTTTTTCTTTTTC
1 TCTCCTTTT-TTTTTGTTTTTT
**
10898513 TCTTTTTTGTTTTTTGTTTTTTT
1 TCTCCTTT-TTTTTTG-TTTTTT
10898536 TCTCCTTTTTTATTTGTTTTTT
1 TCTCCTTTTTT-TTTGTTTTTT
10898558 TCT
1 TCT
10898561 TCATTGTATC
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 23 0.59
23 16 0.41
ACGTcount: A:0.01, C:0.16, G:0.04, T:0.79
Consensus pattern (21 bp):
TCTCCTTTTTTTTTGTTTTTT
Found at i:10899419 original size:10 final size:10
Alignment explanation
Indices: 10899404--10899449 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
10899394 GACCCATCTC
10899404 TTTTTTTGAT
1 TTTTTTTGAT
10899414 TTTTTTTGACT
1 TTTTTTTGA-T
10899425 TTTTTTT-AT
1 TTTTTTTGAT
**
10899434 TTGATTTGAT
1 TTTTTTTGAT
10899444 TTTTTT
1 TTTTTT
10899450 CACACGTCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
9 6 0.20
10 16 0.53
11 8 0.27
ACGTcount: A:0.11, C:0.02, G:0.09, T:0.78
Consensus pattern (10 bp):
TTTTTTTGAT
Done.