Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 44 of 163
Found at i:11049533 original size:54 final size:56
Alignment explanation
Indices: 11049409--11049541 Score: 173
Period size: 55 Copynumber: 2.4 Consensus size: 56
11049399 ATCTGGATTG
* * * * *
11049409 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATAGATTTA
*
11049464 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATAGATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATAGATTTA
* *
11049518 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11049542 TTTATGTAGA
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
54 32 0.46
55 36 0.52
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATAGATTTA
Found at i:11050917 original size:34 final size:34
Alignment explanation
Indices: 11050837--11050917 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 34
11050827 TAAACATATA
11050837 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11050871 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11050905 AACAATCGATTCA
1 AACAATCGATTCA
11050918 GTCCAAATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11056303 original size:54 final size:55
Alignment explanation
Indices: 11056181--11056311 Score: 183
Period size: 55 Copynumber: 2.4 Consensus size: 55
11056171 ATCTGGATTG
* * * *
11056181 AATCGATTGTTATGATGGAATATAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATATAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11056236 AATCGATTGTCATGTTGGAATATTGCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATATAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11056290 AATCAATTGTCATGTTGAAATA
1 AATCGATTGTCATGTTGGAATA
11056312 CTTTTATGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
54 31 0.46
55 37 0.54
ACGTcount: A:0.30, C:0.08, G:0.15, T:0.48
Consensus pattern (55 bp):
AATCGATTGTCATGTTGGAATATAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11057690 original size:34 final size:34
Alignment explanation
Indices: 11057610--11057691 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
11057600 TAAACATATA
* *
11057610 AACAATAGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11057644 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11057678 AACAATCGATTCAA
1 AACAATCGATTCAA
11057692 TCCAAATTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11060172 original size:29 final size:30
Alignment explanation
Indices: 11060138--11060267 Score: 171
Period size: 29 Copynumber: 4.4 Consensus size: 30
11060128 AAATAGTCCA
*
11060138 AAAATTACATTTTGA-CCCAAAACTTTTCT
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
11060167 AAAATTACACTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
*
11060197 AAAATTACA-TTTGACCCCTAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCC
11060226 AAAATTTACGATTTT-ACCCC-AAAC-TTTCC
1 AAAA-TTAC-ATTTTGACCCCAAAACTTTTCC
*
11060255 AAAATTTCATTTT
1 AAAATTACATTTT
11060268 TAACCTCGGT
Statistics
Matches: 93, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
27 5 0.05
28 3 0.03
29 46 0.49
30 30 0.32
31 6 0.06
32 3 0.03
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTCC
Found at i:11060208 original size:59 final size:59
Alignment explanation
Indices: 11060138--11060267 Score: 169
Period size: 59 Copynumber: 2.2 Consensus size: 59
11060128 AAATAGTCCA
*
11060138 AAAATTACATTTTGA-CCCAAAACTTTTCTAAAA-TTAC-ACTTTGACCCCAAAACTTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCCAAAATTTACGA-TTTGACCCC-AAAC-TTTCC
* *
11060197 AAAATTACA-TTTGACCCCTAAACTTTTCCAAAATTTACGATTTTACCCCAAACTTTCC
1 AAAATTACATTTTGACCCCAAAACTTTTCCAAAATTTACGATTTGACCCCAAACTTTCC
*
11060255 AAAATTTCATTTT
1 AAAATTACATTTT
11060268 TAACCTCGGT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
58 18 0.29
59 32 0.51
60 12 0.19
61 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.36
Consensus pattern (59 bp):
AAAATTACATTTTGACCCCAAAACTTTTCCAAAATTTACGATTTGACCCCAAACTTTCC
Found at i:11060319 original size:59 final size:58
Alignment explanation
Indices: 11060224--11060559 Score: 336
Period size: 58 Copynumber: 5.8 Consensus size: 58
11060214 CTAAACTTTT
* * * * *
11060224 CCAAAATTTACGATTTTACCCCAAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCA
1 CCAAAATTTACCATTTTACCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
11060282 TCAAAAATTACCATTTTAACCTCGAACCTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAATTTACCATTTT-ACCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * *
11060341 -CAAAAATTACCATTTTGCCCTTGAACCTTCCAAAATTCCATTTTTAACCCCGATTTCA
1 CCAAAATTTACCATTTTACCC-CGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
*** * * * *
11060399 CCAAAATTTACCATTTTACCCCGAACTTTCCAAAATTTTGTTTTTGACCTCGGTTTTA
1 CCAAAATTTACCATTTTACCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * * * * *
11060457 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAGTTACAATTTTAGCCCTGATTTCT
1 CCAAAATTTACCATTTTA-CCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
* * **
11060516 CCAAAA-TTACAATTTTGCCCTCGAA-AGTCCAAAATTACCATTTT
1 CCAAAATTTACCATTTTACCC-CGAACTTTCCAAAATT-CCATTTT
11060560 GCCCCCGGGT
Statistics
Matches: 230, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
57 13 0.06
58 130 0.57
59 87 0.38
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (58 bp):
CCAAAATTTACCATTTTACCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCA
Found at i:11060327 original size:29 final size:29
Alignment explanation
Indices: 11060251--11060389 Score: 106
Period size: 29 Copynumber: 4.8 Consensus size: 29
11060241 ACCCCAAACT
* ***
11060251 TTCCAAAATTTCATTTTTAACCTCGGTTTC
1 TTCCAAAATTCCATTTTTAACCTC-GAACC
* *
11060281 ATCAAAAATTACCA-TTTTAACCTCGAACC
1 TTCCAAAATT-CCATTTTTAACCTCGAACC
* *
11060310 TTCCAAAATTCCATTTTTAACCCCG-A-T
1 TTCCAAAATTCCATTTTTAACCTCGAACC
** *
11060337 TTCACAAAAATTACCA-TTTTGCCCTTGAACC
1 TTC-C-AAAATT-CCATTTTTAACCTCGAACC
11060368 TTCCAAAATTCCATTTTTAACC
1 TTCCAAAATTCCATTTTTAACC
11060390 CCGATTTCAC
Statistics
Matches: 84, Mismatches: 17, Indels: 17
0.71 0.14 0.14
Matches are distributed among these distances:
27 3 0.04
28 8 0.10
29 45 0.54
30 23 0.27
31 5 0.06
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.37
Consensus pattern (29 bp):
TTCCAAAATTCCATTTTTAACCTCGAACC
Found at i:11060402 original size:29 final size:29
Alignment explanation
Indices: 11060265--11060531 Score: 108
Period size: 29 Copynumber: 9.1 Consensus size: 29
11060255 AAAATTTCAT
* * *
11060265 TTTTAACCTCGGTTTCATCAAAAATTACCA
1 TTTTAACCCCGATTTCA-CCAAAATTACCA
* *
11060295 TTTTAACCTCGAACCTT--CCAAAATT-CCA
1 TTTTAACCCCG-A-TTTCACCAAAATTACCA
*
11060323 TTTTTAACCCCGATTTCACAAAAATTACCA
1 -TTTTAACCCCGATTTCACCAAAATTACCA
* * *
11060353 TTTT-GCCCTTGAACCTT--CCAAAATT-CCA
1 TTTTAACCC-CG-A-TTTCACCAAAATTACCA
11060381 TTTTTAACCCCGATTTCACCAAAATTTACCA
1 -TTTTAACCCCGATTTCACCAAAA-TTACCA
****
11060412 TTTT-ACCCCGAACTTT--CCAAAATTTTGT
1 TTTTAACCCCG-A-TTTCACCAAAATTACCA
* * * *
11060440 TTTTGACCTCGGTTTTACCAAAATTTACCA
1 TTTTAACCCCGATTTCACCAAAA-TTACCA
* * *
11060470 TTTTACCCCCGAACTTT--CCAAAGTTACAA
1 TTTTAACCCCG-A-TTTCACCAAAATTACCA
* * * *
11060499 TTTTAGCCCTGATTTCTCCAAAATTACAA
1 TTTTAACCCCGATTTCACCAAAATTACCA
11060528 TTTT
1 TTTT
11060532 GCCCTCGAAA
Statistics
Matches: 180, Mismatches: 32, Indels: 51
0.68 0.12 0.19
Matches are distributed among these distances:
27 10 0.06
28 18 0.10
29 99 0.55
30 40 0.22
31 8 0.04
32 5 0.03
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (29 bp):
TTTTAACCCCGATTTCACCAAAATTACCA
Found at i:11060491 original size:175 final size:175
Alignment explanation
Indices: 11060224--11060559 Score: 458
Period size: 175 Copynumber: 1.9 Consensus size: 175
11060214 CTAAACTTTT
* *
11060224 CCAAAATTTACGATTTTACCCCAAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCATCAAAAA
1 CCAAAATTTACCATTTTACCCCAAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * * *
11060289 TTACCATTTTAACCTCGAACCTTCCAAAATTCCATTTTTAACCCCGATTTCACAAAAATTACCAT
66 TTACCATTTTAACCCCGAACCTTCCAAAATTACAATTTTAACCCCGATTTCACAAAAATTACAAT
* **
11060354 TTTGCCCTTGAACCTTCCAAAATT-CCATTTTTAACCCCGATTTCA
131 TTTGCCCTCGAA-AGTCCAAAATTACCATTTTTAACCCCGATTTCA
* ** * * *
11060399 CCAAAATTTACCATTTTACCCCGAACTTTCCAAAATTTTGTTTTTGACCTCGGTTTTACCAAAAT
1 CCAAAATTTACCATTTTACCCCAAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * * * * * *
11060464 TTACCATTTTACCCCCGAACTTTCCAAAGTTACAATTTTAGCCCTGATTTCTCCAAAATTACAAT
66 TTACCATTTTAACCCCGAACCTTCCAAAATTACAATTTTAACCCCGATTTCACAAAAATTACAAT
11060529 TTTGCCCTCGAAAGTCCAAAATTACCATTTT
131 TTTGCCCTCGAAAGTCCAAAATTACCATTTT
11060560 GCCCCCGGGT
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
174 9 0.07
175 129 0.93
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (175 bp):
CCAAAATTTACCATTTTACCCCAAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
TTACCATTTTAACCCCGAACCTTCCAAAATTACAATTTTAACCCCGATTTCACAAAAATTACAAT
TTTGCCCTCGAAAGTCCAAAATTACCATTTTTAACCCCGATTTCA
Found at i:11064178 original size:19 final size:20
Alignment explanation
Indices: 11064154--11064200 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
11064144 TCGACGTGTG
**
11064154 AAAAAAAATCAAATCAAAT-
1 AAAAAAAATCAAAAAAAATC
*
11064173 AAAAAAAGTCAAAAAAAATC
1 AAAAAAAATCAAAAAAAATC
11064193 AAAAAAAA
1 AAAAAAAA
11064201 AAGAGATGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.11
Consensus pattern (20 bp):
AAAAAAAATCAAAAAAAATC
Found at i:11064201 original size:11 final size:10
Alignment explanation
Indices: 11064154--11064200 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
11064144 TCGACGTGTG
11064154 AAAAAAAATC
1 AAAAAAAATC
**
11064164 AAATCAAAT-
1 AAAAAAAATC
*
11064173 AAAAAAAGTC
1 AAAAAAAATC
11064183 AAAAAAAATC
1 AAAAAAAATC
11064193 AAAAAAAA
1 AAAAAAAA
11064201 AAGAGATGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
9 6 0.20
10 24 0.80
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.11
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:11065074 original size:22 final size:21
Alignment explanation
Indices: 11065046--11065114 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
11065036 GATACAATGA
11065046 AGAAAAAAACAAATAAAAAAGG
1 AGAAAAAAACAAA-AAAAAAGG
**
11065068 AGAAAAAAACAAAAAACAAAAA
1 AGAAAAAAACAAAAAA-AAAGG
* *
11065090 AGAGAAAAAGAAAAAGAAAAGG
1 AGAAAAAAACAAAAA-AAAAGG
11065112 AGA
1 AGA
11065115 GGTCGAGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 3 0.08
22 35 0.90
23 1 0.03
ACGTcount: A:0.78, C:0.04, G:0.16, T:0.01
Consensus pattern (21 bp):
AGAAAAAAACAAAAAAAAAGG
Found at i:11066579 original size:101 final size:100
Alignment explanation
Indices: 11066367--11066589 Score: 263
Period size: 101 Copynumber: 2.2 Consensus size: 100
11066357 TCAGCACCAC
* * *
11066367 AAAACACAACAA-GGAAAGGTCTAAGTCACAATGGCAGACCGTGTACCTCAGAAGCATGACGGGA
1 AAAACACAA-AAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGA
* * * ** *
11066431 TAGATCTAAGACTGCAATGGTGGATCTAGTACCGTA
65 AAGATCTAAGACCGCAACGGCAGATCTAGTACCGCA
* * *
11066467 AAAACAGAAAAGGGAAAGGTCTAAGTCGCAACGG-TGAACCGTGTACCTCAAAAGACACGACGGG
1 AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAG-ACCGTGTACCTCAAAAG-CACGACGGG
11066531 AAAGATCTAAGACCGCAACGGCAGAT-TCAGTACCGCA
64 AAAGATCTAAGACCGCAACGGCAGATCT-AGTACCGCA
* *
11066568 AAAAGACAAAAGGGAAAAGTCT
1 AAAACACAAAAGGGAAAGGTCT
11066590 TTATCTCTCT
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
99 3 0.03
100 45 0.43
101 56 0.54
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.14
Consensus pattern (100 bp):
AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGAA
AGATCTAAGACCGCAACGGCAGATCTAGTACCGCA
Found at i:11066685 original size:40 final size:40
Alignment explanation
Indices: 11066641--11066791 Score: 126
Period size: 40 Copynumber: 3.5 Consensus size: 40
11066631 AATGTCAATT
11066641 TTTATC-CTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCTCTC-TGAAGTTATAGTAAAGTTGGATAATGAATC
** *
11066681 TTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATT
1 TTTATCTCTCTGAAGTTATAGTAA-AGT----T---GGAT--AATG--A-ATC
11066734 TTTATC-CTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCTCTC-TGAAGTTATAGTAAAGTTGGATAATGAATC
11066774 TTTATCTCTCTGAAGTTA
1 TTTATCTCTCTGAAGTTA
11066792 AGAGTAAGAG
Statistics
Matches: 89, Mismatches: 6, Indels: 32
0.70 0.05 0.25
Matches are distributed among these distances:
40 36 0.40
41 10 0.11
43 4 0.04
45 3 0.03
48 3 0.03
50 4 0.04
52 7 0.08
53 22 0.25
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (40 bp):
TTTATCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
Found at i:11066991 original size:92 final size:92
Alignment explanation
Indices: 11066588--11067313 Score: 705
Period size: 92 Copynumber: 7.8 Consensus size: 92
11066578 AGGGAAAAGT
* ** **
11066588 CTTTATCTCTCTGAAGTT-ATAGTAAGAGCAAGATAAAGCTTTAAATGTCAATTTT--TATCCTC
1 CTTTATCTCTCTGAAATTGA-AGTAAGAGCAAGATAAAGC-ACAAACATC-ATTTTCCTATCCTC
* * *
11066650 TTGAAGTT-ATAGTAAAGTTGGATAATGAA-T
63 TTGAAATTGA-AGTAAAGTTGGAT-ATCAAGC
* * * **
11066680 CTTTATCTCTCTGAAGTT-ATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATTTT--TATCCT
1 CTTTATCTCTCTGAAATTGA-AGTAAGAGCAAGATAAAGC-ACAAACATC--ATTTTCCTATCCT
* * *
11066742 CTTGAAGTT-ATAGTAAAGTTGGATAATGAA-T
62 CTTGAAATTGA-AGTAAAGTTGGAT-ATCAAGC
* * *
11066773 CTTTATCTCTCTGAAGTTAAGAGTAAGAGCTAGAT-AAGCATCAAA-ATCATTTTCCTATCCTAT
1 CTTTATCTCTCTGAAATTGA-AGTAAGAGCAAGATAAAGCA-CAAACATCA--TT--T-TCCTAT
* *
11066836 CCTCTTGAAATTGAAGTAGTAAAGCTGGATATCAAGT
59 CCTCTTGAAATTG-A--AGTAAAGTTGGATATCAAGC
*
11066873 CTTTATCTCTCTGAAATTGAAGTAAGAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTT
1 CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGATAAAGCA-CAAACATCATTTTCCTATCCTCTT
*
11066938 GAAATT-AAGTAAAGTTGGATAACAAGC
65 GAAATTGAAGTAAAGTTGGATATCAAGC
** * * *
11066965 CTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
1 CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGATAAAGCACAAACATCATTTTCCTATCCTCTTG
* *
11067030 AAATTGAAGTAGAGCTGGATATCAAGC
66 AAATTGAAGTAAAGTTGGATATCAAGC
* * *
11067057 CTTTGTCTCTCTGAAATTGAAGTAAGAGTAAGATGAAA-CACCAACATCATTTTCCTATCCTCTT
1 CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGAT-AAAGCACAAACATCATTTTCCTATCCTCTT
*
11067121 GAAATTGAAGTAGAGTTGGATATCAAGC
65 GAAATTGAAGTAAAGTTGGATATCAAGC
* * **
11067149 CTTTTTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCCTCTTG
1 CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGATAAAGCACAAACATCATTTTCCTATCCTCTTG
* *
11067213 AAATTGAAGTAGAGCTGGATATCAAGC
66 AAATTGAAGTAAAGTTGGATATCAAGC
** * * * *
11067240 CTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTT-C-GTCC-CTTG
1 CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGATAAAGCACAAACATCATTTTCCTATCCTCTTG
11067302 AAATTGAAGTAA
66 AAATTGAAGTAA
11067314 GAGTAAGATG
Statistics
Matches: 573, Mismatches: 41, Indels: 43
0.87 0.06 0.07
Matches are distributed among these distances:
89 15 0.03
90 4 0.01
91 118 0.21
92 250 0.44
93 70 0.12
94 15 0.03
95 1 0.00
96 18 0.03
97 15 0.03
99 21 0.04
100 42 0.07
101 4 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (92 bp):
CTTTATCTCTCTGAAATTGAAGTAAGAGCAAGATAAAGCACAAACATCATTTTCCTATCCTCTTG
AAATTGAAGTAAAGTTGGATATCAAGC
Found at i:11067224 original size:183 final size:184
Alignment explanation
Indices: 11066830--11067317 Score: 738
Period size: 183 Copynumber: 2.7 Consensus size: 184
11066820 CATTTTCCTA
* *
11066830 TCCTATCCTCTTGAAATTGAAGTAGTAAAGCTGGATATCAAGTCTTTATCTCTCTGAAATTGAAG
1 TCCTATCCTCTTGAAATTGAAGTAG---AGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAG
* *
11066895 TAAGAGCT-AGAT-AAAGCATCAAACATCATTTTCCTATCCTCTTGAAATT-AAGTAAAGTTGGA
63 TAAGAG-TAAGATGAAA-CA-CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGA
11066957 TAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTT
125 TAACAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTT
11067017 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
*
11067082 GAGTAAGATGAAACACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAA
66 GAGTAAGATGAAACACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAA
** * *
11067147 GCCTTTTTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTT
131 GCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTT
* *
11067200 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
* * *
11067265 GAGCAAGATGAAGCACCAACATCATTTT-C-GTCC-CTTGAAATTGAAGTAAGAGT
66 GAGTAAGATGAAACACCAACATCATTTTCCTATCCTCTTGAAATTGAAGT-AGAGT
11067318 AAGATGAAGC
Statistics
Matches: 283, Mismatches: 14, Indels: 14
0.91 0.05 0.05
Matches are distributed among these distances:
180 14 0.05
181 8 0.03
182 1 0.00
183 122 0.43
184 110 0.39
185 3 0.01
187 25 0.09
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (184 bp):
TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
GAGTAAGATGAAACACCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACAA
GCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTT
Found at i:11067252 original size:91 final size:92
Alignment explanation
Indices: 11066830--11067312 Score: 733
Period size: 92 Copynumber: 5.3 Consensus size: 92
11066820 CATTTTCCTA
* *
11066830 TCCTATCCTCTTGAAATTGAAGTAGTAAAGCTGGATATCAAGTCTTTATCTCTCTGAAATTGAAG
1 TCCTATCCTCTTGAAATTGAAGTAG---AGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAG
* * *
11066895 TAAGAGCTAGATAAAGCATCAAACATCATTT
63 TAAGAGCAAGATGAAGCA-CCAACATCATTT
* * * * *
11066926 TCCTATCCTCTTGAAATT-AAGTAAAGTTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
11066990 GAGCAAGATGAAGCACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
11067017 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
* *
11067082 GAGTAAGATGAAACACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
* *
11067109 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTTTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
*
11067174 GAGCAAGATGAAGCACCGACATC-TTT
66 GAGCAAGATGAAGCACCAACATCATTT
* *
11067200 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
11067265 GAGCAAGATGAAGCACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
*
11067292 T-C-GTCC-CTTGAAATTGAAGTA
1 TCCTATCCTCTTGAAATTGAAGTA
11067313 AGAGTAAGAT
Statistics
Matches: 357, Mismatches: 28, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
89 15 0.04
90 3 0.01
91 116 0.32
92 200 0.56
95 5 0.01
96 18 0.05
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (92 bp):
TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
GAGCAAGATGAAGCACCAACATCATTT
Found at i:11067314 original size:49 final size:49
Alignment explanation
Indices: 11067241--11067371 Score: 203
Period size: 49 Copynumber: 2.7 Consensus size: 49
11067231 ATATCAAGCC
11067241 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATC-TT
*
11067291 TTCGTCCCT-TGAAATTGAAGTAAGAGTAAGATGAAGCACCAACATCTT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
* *
11067339 TTCCTATCCTCTGAAATTGAA-TAAGAGCAAGAT
1 TTCGT-CCCTCTGAAATTGAAGTAAGAGCAAGAT
11067372 AAAACCTCAA
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
48 6 0.08
49 50 0.67
50 19 0.25
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (49 bp):
TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
Found at i:11067684 original size:12 final size:11
Alignment explanation
Indices: 11067655--11067690 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
11067645 TAAAATTATT
11067655 TTAATTTTAAA
1 TTAATTTTAAA
*
11067666 TTTATTTTAAA
1 TTAATTTTAAA
11067677 TTCAATTTTAAA
1 TT-AATTTTAAA
11067689 TT
1 TT
11067691 TAAATTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTAATTTTAAA
Found at i:11072098 original size:2 final size:2
Alignment explanation
Indices: 11072091--11072117 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11072081 TCACAGCTTT
11072091 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11072118 TTTTTGGGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11074707 original size:54 final size:56
Alignment explanation
Indices: 11074586--11074718 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11074576 ATCTGGATTG
* * * *
11074586 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11074641 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11074695 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11074719 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11076094 original size:34 final size:34
Alignment explanation
Indices: 11076014--11076095 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11076004 TAAACATATA
*
11076014 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11076048 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11076082 AACAATCGATTCAA
1 AACAATCGATTCAA
11076096 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11080594 original size:46 final size:45
Alignment explanation
Indices: 11080541--11080629 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
11080531 ATCCCACTAT
11080541 ACCAGACACGA-CCTCCTATTGTTCTTAGCTCAATCAAGAAAAAAAC
1 ACCAGACA-GACCCTCCTATTGTTCTTAGCTCAATCAA-AAAAAAAC
*
11080587 ACCAGACAGACCCTCCTATTGTTTTTAGCTCAATCAAAAAAAA
1 ACCAGACAGACCCTCCTATTGTTCTTAGCTCAATCAAAAAAAA
11080630 CAAATATCTG
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
45 8 0.20
46 33 0.80
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (45 bp):
ACCAGACAGACCCTCCTATTGTTCTTAGCTCAATCAAAAAAAAAC
Found at i:11083787 original size:54 final size:56
Alignment explanation
Indices: 11083666--11083798 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11083656 ATCTGGATTG
* * * *
11083666 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11083721 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11083775 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11083799 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11086372 original size:30 final size:30
Alignment explanation
Indices: 11086331--11086444 Score: 151
Period size: 30 Copynumber: 3.8 Consensus size: 30
11086321 GTCCCAAAAG
11086331 TCCAGAAATTACATTTTGACCCCAAAACTTT
1 TCCA-AAATTACATTTTGACCCCAAAACTTT
* * *
11086362 TCTAAAATTACACTTTGACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
11086392 TCCAAAATTACATTTTGA-CCCTAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
11086421 TCCAAAATTTACCATTTT-ACCCCA
1 TCCAAAA-TTA-CATTTTGACCCCA
11086445 CCCCCGAACT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
29 16 0.22
30 44 0.61
31 12 0.17
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (30 bp):
TCCAAAATTACATTTTGACCCCAAAACTTT
Found at i:11086605 original size:63 final size:59
Alignment explanation
Indices: 11086513--11086652 Score: 176
Period size: 63 Copynumber: 2.3 Consensus size: 59
11086503 ACCATTTGAA
11086513 ACCCTCTG-ACCTTCCAAAATTCCATTTTTAAACCCCTCGATTTCACACAAAAAATTACCATTTT
1 ACCC-CTGAACCTTCCAAAATTCCATTTTT-AA-CCC-CGATTTCAC-C-AAAAATTACCATTTT
* * *
11086577 -GCCCTGAACCTTCCAAAATTTCATTTTTAACCCCGATTTCACCAAAATTTACCATTTT
1 ACCCCTGAACCTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTT
*
11086635 ACCCCTGAACTTTCCAAA
1 ACCCCTGAACCTTCCAAA
11086653 TTTTGTTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
58 14 0.20
59 16 0.23
60 9 0.13
61 3 0.04
62 5 0.07
63 22 0.32
ACGTcount: A:0.31, C:0.31, G:0.04, T:0.33
Consensus pattern (59 bp):
ACCCCTGAACCTTCCAAAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTT
Found at i:11086692 original size:60 final size:58
Alignment explanation
Indices: 11086524--11086751 Score: 185
Period size: 60 Copynumber: 3.8 Consensus size: 58
11086514 CCCTCTGACC
* * * *
11086524 TTCCAAAATTCCATTTTTAAACCCCTCGATTTCACACAAAAAATTACCATTTT-GCCCTGAACC
1 TTCC-AAATTTCATTTTT-AA-CCC-CGATTTCAC-C-AAAATTTACCATTTTACCCCTGAACT
11086587 TTCCAAAATTTCATTTTTAACCCCGATTTCACCAAAATTTACCATTTTACCCCTGAACT
1 TTCC-AAATTTCATTTTTAACCCCGATTTCACCAAAATTTACCATTTTACCCCTGAACT
** * * *
11086646 TTCCAAATTTTGTTTTTGACACCTCGATTTTTACC-AAATTTACCATTTTACCCCCCGAACT
1 TTCCAAATTTCATTTTT-A-ACCCCGA-TTTCACCAAAATTTACCATTTTA-CCCCTGAACT
* * * * * * *
11086707 TTCCAAGTTACA-ATTTAGCCCTGATTTCTCCAAAA-TTACAATTTT
1 TTCCAAATTTCATTTTTAACCCCGATTTCACCAAAATTTACCATTTT
11086752 GCCCTCGAAA
Statistics
Matches: 139, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
57 14 0.10
58 32 0.23
59 15 0.11
60 33 0.24
61 26 0.19
62 2 0.01
63 17 0.12
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.37
Consensus pattern (58 bp):
TTCCAAATTTCATTTTTAACCCCGATTTCACCAAAATTTACCATTTTACCCCTGAACT
Found at i:11090409 original size:10 final size:10
Alignment explanation
Indices: 11090378--11090426 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
11090368 TCGACGTGTG
*
11090378 AAAAAAAATC
1 AAAAAAAATA
**
11090388 AAATCAAATA
1 AAAAAAAATA
*
11090398 AAAAAAAGTA
1 AAAAAAAATA
11090408 AAAAAAAATCA
1 AAAAAAAAT-A
11090419 AAAAAAAA
1 AAAAAAAA
11090427 GAGATGGGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
10 22 0.71
11 9 0.29
ACGTcount: A:0.82, C:0.06, G:0.02, T:0.10
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:11091297 original size:22 final size:21
Alignment explanation
Indices: 11091269--11091338 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
11091259 GATACAATGA
11091269 AGAAAAAAACAAATAAAAAAGG
1 AGAAAAAAACAAA-AAAAAAGG
**
11091291 AGAAAAAAAACAAAAAACAAAAA
1 AG-AAAAAAACAAAAAA-AAAGG
* *
11091314 AGAGAAAAAGAAAAAGAAAAGG
1 AGAAAAAAACAAAAA-AAAAGG
11091336 AGA
1 AGA
11091339 GGTCGAGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 22 0.56
23 17 0.44
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.01
Consensus pattern (21 bp):
AGAAAAAAACAAAAAAAAAGG
Found at i:11091301 original size:23 final size:25
Alignment explanation
Indices: 11091271--11091322 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
11091261 TACAATGAAG
* *
11091271 AAAAAAAC-AAATA-AAAAAGGAGA
1 AAAAAAACAAAAAACAAAAAAGAGA
11091294 AAAAAAACAAAAAACAAAAAAGAGA
1 AAAAAAACAAAAAACAAAAAAGAGA
11091319 AAAA
1 AAAA
11091323 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.32
24 4 0.16
25 13 0.52
ACGTcount: A:0.83, C:0.06, G:0.10, T:0.02
Consensus pattern (25 bp):
AAAAAAACAAAAAACAAAAAAGAGA
Found at i:11091328 original size:23 final size:25
Alignment explanation
Indices: 11091271--11091333 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
11091261 TACAATGAAG
* *
11091271 AAAAAAACAAATAAAAAAGGAGAAA
1 AAAAAAAAAAACAAAAAAGGAGAAA
11091296 AAAAACAAAAAACAAAAAA-GAGAAA
1 AAAAA-AAAAAACAAAAAAGGAGAAA
11091321 AAGAAAAAGAAAA
1 AA-AAAAA-AAAA
11091334 GGAGAGGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
25 15 0.45
26 18 0.55
ACGTcount: A:0.83, C:0.05, G:0.11, T:0.02
Consensus pattern (25 bp):
AAAAAAAAAAACAAAAAAGGAGAAA
Found at i:11092806 original size:101 final size:100
Alignment explanation
Indices: 11092594--11092816 Score: 272
Period size: 101 Copynumber: 2.2 Consensus size: 100
11092584 TCAGCACCAC
* * *
11092594 AAAACACAACAA-GGAAAGGTCTAAGTCACAATGGCAGACCGTGTACCTCAGAAGCATGACGGGA
1 AAAACACAA-AAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGA
* * * ** *
11092658 TAGATCTAAGACTGCAATGGTGGATCTAGTACCGTA
65 AAGATCTAAGACCGCAACGGCAGATCTAGTACCGCA
* *
11092694 AAAACAGAAAAGGGAAAGGTCTAAGTCGCAACGGC-GAACCGTGTACCTCAAAAGACACGACGGG
1 AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAG-ACCGTGTACCTCAAAAG-CACGACGGG
11092758 AAAGATCTAAGACCGCAACGGCAGAT-TCAGTACCGCA
64 AAAGATCTAAGACCGCAACGGCAGATCT-AGTACCGCA
* *
11092795 AAAAGACAAAAGGGAAAAGTCT
1 AAAACACAAAAGGGAAAGGTCT
11092817 TTATCTCTCT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
99 3 0.03
100 46 0.44
101 56 0.53
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.14
Consensus pattern (100 bp):
AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGAA
AGATCTAAGACCGCAACGGCAGATCTAGTACCGCA
Found at i:11092810 original size:51 final size:50
Alignment explanation
Indices: 11092654--11092811 Score: 115
Period size: 51 Copynumber: 3.1 Consensus size: 50
11092644 GAAGCATGAC
* * * * * * * *
11092654 GGGATAGATCTAAGACTGCAATGGTGGATCTAGTACCGTAAAAACAGAAAA
1 GGGAAAGATCTAAGACCGCAACGG-CGATCGAGTACCGCAAAAAGACAAAA
* * * * * * *
11092705 GGGAAAGGTCTAAG-TCGCAACGGCGAACCGTGTACCTC-AAAAGACACGAC
1 GGGAAAGATCTAAGACCGCAACGGCG-ATCGAGTACCGCAAAAAGACA-AAA
11092755 GGGAAAGATCTAAGACCGCAACGGCAGATTC-AGTACCGCAAAAAGACAAAA
1 GGGAAAGATCTAAGACCGCAACGGC-GA-TCGAGTACCGCAAAAAGACAAAA
11092806 GGGAAA
1 GGGAAA
11092812 AGTCTTTATC
Statistics
Matches: 79, Mismatches: 22, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
49 7 0.09
50 27 0.34
51 35 0.44
52 10 0.13
ACGTcount: A:0.41, C:0.20, G:0.27, T:0.13
Consensus pattern (50 bp):
GGGAAAGATCTAAGACCGCAACGGCGATCGAGTACCGCAAAAAGACAAAA
Found at i:11092912 original size:40 final size:41
Alignment explanation
Indices: 11092868--11093150 Score: 211
Period size: 40 Copynumber: 6.4 Consensus size: 41
11092858 AATGTCAATT
11092868 TTTATCCTCT-TGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
** *
11092908 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
1 TTTATCCTCTCTGAAGTTATAGTAA-AGT----T---GGAT--AATG---AATC
11092961 TTTATCCTCT-TGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
** *
11093001 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATT
1 TTTATCCTCTCTGAAGTTATAGTAA-AGT----T---GGAT--AATG--A-ATC
*
11093054 TTTATCATCT-TGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
11093094 TTTAT-CTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
*
11093134 TTTAT-CTCACTGAAGTT
1 TTTATCCTCTCTGAAGTT
11093151 GAAGTAAGAG
Statistics
Matches: 197, Mismatches: 15, Indels: 62
0.72 0.05 0.23
Matches are distributed among these distances:
39 11 0.06
40 94 0.48
41 7 0.04
43 8 0.04
45 6 0.03
48 6 0.03
50 8 0.04
52 7 0.04
53 43 0.22
54 7 0.04
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.39
Consensus pattern (41 bp):
TTTATCCTCTCTGAAGTTATAGTAAAGTTGGATAATGAATC
Found at i:11092975 original size:53 final size:53
Alignment explanation
Indices: 11092908--11093077 Score: 172
Period size: 53 Copynumber: 3.5 Consensus size: 53
11092898 ATAATGAATC
11092908 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
1 TTTATCCTCT-TGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
** *
11092961 TTTATCCTCTTGAAGTTATAGTAA-AGT----T---GGAT--AATG---AATC
1 TTTATCCTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
*
11093001 TTTATCTCTC-TGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATT
1 TTTATC-CTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
*
11093054 TTTATCATCTTGAAGTTATAGTAA
1 TTTATCCTCTTGAAGTTATAGTAA
11093078 AGTTGGATAA
Statistics
Matches: 93, Mismatches: 8, Indels: 32
0.70 0.06 0.24
Matches are distributed among these distances:
40 23 0.25
41 6 0.06
43 4 0.04
45 3 0.03
48 3 0.03
50 4 0.04
52 5 0.05
53 41 0.44
54 4 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (53 bp):
TTTATCCTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
Found at i:11093006 original size:93 final size:93
Alignment explanation
Indices: 11092814--11093117 Score: 565
Period size: 93 Copynumber: 3.3 Consensus size: 93
11092804 AAGGGAAAAG
* *
11092814 TCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTTAAATGTC-AATTTTTATCCTCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
11092878 TGAAGTTATAGTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
11092906 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
11092971 TGAAGTTATAGTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
* *
11092999 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATTTTTATCATCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
11093064 TGAAGTTATAGTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
11093092 TCTTTATCTCTCTGAAGTTATAGTAA
1 TCTTTATCTCTCTGAAGTTATAGTAA
11093118 AGTTGGATAA
Statistics
Matches: 207, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
92 48 0.23
93 159 0.77
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (93 bp):
TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
TGAAGTTATAGTAAAGTTGGATAATGAA
Found at i:11093340 original size:40 final size:41
Alignment explanation
Indices: 11093290--11093715 Score: 126
Period size: 40 Copynumber: 9.5 Consensus size: 41
11093280 ATTTTCCTAT
11093290 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
** * * *
11093331 CCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA--AGC--C---TTCGT-C
* *
11093382 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
** * * *
11093423 CCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA--AGC--C---TTCGT-C
* * * *
11093474 CCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* * * * *
11093515 TCTC-TGAAATTGAAGTAAGAG-TAAGATGAAACACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCT-GGAT--AACA--AGC--C---TTCGT-C
* * *
11093566 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* ** * * *
11093607 TCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATCTTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA-AG-C--C--TTCGT-C
* *
11093657 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
11093698 CCTC-TGAAATTGAAGTAA
1 CCTCTTGAAATTGAAGTAA
11093716 GAGCAAGATG
Statistics
Matches: 274, Mismatches: 62, Indels: 99
0.63 0.14 0.23
Matches are distributed among these distances:
40 67 0.24
41 41 0.15
42 18 0.07
43 9 0.03
44 2 0.01
45 10 0.04
46 1 0.00
47 11 0.04
48 2 0.01
49 11 0.04
50 22 0.08
51 40 0.15
52 40 0.15
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (41 bp):
CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
Found at i:11093405 original size:92 final size:92
Alignment explanation
Indices: 11093191--11093764 Score: 947
Period size: 92 Copynumber: 6.3 Consensus size: 92
11093181 CATTTTCCTA
* ** *
11093191 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGTCTTTATCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
* * *
11093256 GAGCTAGATAAAGCATCAAACATCATTT
66 GAGCAAGATGAAGCA-CCAACATCATTT
* *
11093284 TCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
11093349 GAGCAAGATGAAGCACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
11093376 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
11093441 GAGCAAGATGAAGCACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
* * *
11093468 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
* *
11093533 GAGTAAGATGAAACACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
* *
11093560 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
*
11093625 GAGCAAGATGAAGCACCGACATC-TTT
66 GAGCAAGATGAAGCACCAACATCATTT
11093651 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
11093716 GAGCAAGATGAAGCACCAACATCATTT
66 GAGCAAGATGAAGCACCAACATCATTT
* *
11093743 TCGT-CCCTC-TGAAATTGAAGTA
1 TCCTATCCTCTTGAAATTGAAGTA
11093765 AGAGTAAGAT
Statistics
Matches: 455, Mismatches: 25, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
90 13 0.03
91 92 0.20
92 278 0.61
93 72 0.16
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (92 bp):
TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAA
GAGCAAGATGAAGCACCAACATCATTT
Found at i:11093732 original size:275 final size:277
Alignment explanation
Indices: 11093191--11093769 Score: 990
Period size: 275 Copynumber: 2.1 Consensus size: 277
11093181 CATTTTCCTA
* *
11093191 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGTCTTTATCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
11093256 GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
66 GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
11093321 AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
131 AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
11093386 TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
196 TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
11093451 AAGCACCAACATCATTT
261 AAGCACCAACATCATTT
*
11093468 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
* * *
11093533 GAG-TAAGATGAAA-CA-CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATAT
66 GAGCT-AGAT-AAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAA
* * *
11093595 CAAGCCTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCC
129 CAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCC
11093659 TCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGA
194 TCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGA
11093724 TGAAGCACCAACATCATTT
259 TGAAGCACCAACATCATTT
* *
11093743 TCGT-CCCTC-TGAAATTGAAGTAAGAGT
1 TCCTATCCTCTTGAAATTGAAGT-AGAGT
11093770 AAGATGAAGC
Statistics
Matches: 288, Mismatches: 11, Indels: 9
0.94 0.04 0.03
Matches are distributed among these distances:
273 12 0.04
274 9 0.03
275 98 0.34
276 95 0.33
277 71 0.25
278 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (277 bp):
TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
AAGCACCAACATCATTT
Found at i:11093751 original size:50 final size:49
Alignment explanation
Indices: 11093692--11093823 Score: 212
Period size: 50 Copynumber: 2.7 Consensus size: 49
11093682 ATATCAAGCC
11093692 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATC-TT
*
11093742 TTCGTCCCTCTGAAATTGAAGTAAGAGTAAGATGAAGCACCAACATCTT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
* *
11093791 TTCCTATCCTCTGAAATTGAA-TAAGAGCAAGAT
1 TTCGT-CCCTCTGAAATTGAAGTAAGAGCAAGAT
11093824 AAAACCTCAA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
49 17 0.22
50 60 0.78
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (49 bp):
TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
Found at i:11094136 original size:12 final size:11
Alignment explanation
Indices: 11094107--11094142 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
11094097 TAAAATTATT
11094107 TTAATTTTAAA
1 TTAATTTTAAA
*
11094118 TTTATTTTAAA
1 TTAATTTTAAA
11094129 TTCAATTTTAAA
1 TT-AATTTTAAA
11094141 TT
1 TT
11094143 TAAATTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTAATTTTAAA
Found at i:11096081 original size:30 final size:30
Alignment explanation
Indices: 11096045--11096154 Score: 132
Period size: 30 Copynumber: 3.6 Consensus size: 30
11096035 AAACAGTCCA
11096045 AAAATTACATTTTAACCCCAAAACTTTTCT
1 AAAATTACATTTTAACCCCAAAACTTTTCT
* * * *
11096075 AAAATTACACTTTGACCCTAAAACTTTTCC
1 AAAATTACATTTTAACCCCAAAACTTTTCT
* *
11096105 AAAATTACATTTTGACCCCTAAACTTTT-T
1 AAAATTACATTTTAACCCCAAAACTTTTCT
*
11096134 AAAATTTACCATTTTACCCCC
1 AAAA-TTA-CATTTTAACCCC
11096155 GAACCTTCCA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
29 4 0.06
30 54 0.79
31 10 0.15
ACGTcount: A:0.36, C:0.25, G:0.02, T:0.36
Consensus pattern (30 bp):
AAAATTACATTTTAACCCCAAAACTTTTCT
Found at i:11101720 original size:54 final size:56
Alignment explanation
Indices: 11101599--11101731 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11101589 ATCTGGATTG
* * * *
11101599 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11101654 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11101708 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11101732 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11103108 original size:34 final size:34
Alignment explanation
Indices: 11103028--11103109 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11103018 TAAACATATA
*
11103028 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11103062 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11103096 AACAATCGATTCAA
1 AACAATCGATTCAA
11103110 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11108758 original size:54 final size:56
Alignment explanation
Indices: 11108637--11108769 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11108627 ATCTGGATTG
* * * *
11108637 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11108692 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11108746 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11108770 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11110146 original size:34 final size:34
Alignment explanation
Indices: 11110066--11110147 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11110056 TAAACATATA
*
11110066 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11110100 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11110134 AACAATCGATTCAA
1 AACAATCGATTCAA
11110148 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11115542 original size:54 final size:56
Alignment explanation
Indices: 11115421--11115553 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11115411 ATCTGGATTG
* * * *
11115421 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11115476 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11115530 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11115554 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11116930 original size:34 final size:34
Alignment explanation
Indices: 11116850--11116931 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11116840 TAAACATATA
*
11116850 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11116884 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11116918 AACAATCGATTCAA
1 AACAATCGATTCAA
11116932 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11122587 original size:54 final size:56
Alignment explanation
Indices: 11122466--11122598 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11122456 ATCTGGATTG
* * * *
11122466 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11122521 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11122575 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11122599 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11123974 original size:34 final size:34
Alignment explanation
Indices: 11123894--11123975 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11123884 TAAACATATA
*
11123894 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11123928 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11123962 AACAATCGATTCAA
1 AACAATCGATTCAA
11123976 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11128676 original size:54 final size:56
Alignment explanation
Indices: 11128555--11128687 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11128545 ATCTGGATTG
* * * *
11128555 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11128610 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11128664 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11128688 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11132558 original size:30 final size:30
Alignment explanation
Indices: 11132532--11132673 Score: 171
Period size: 30 Copynumber: 4.7 Consensus size: 30
11132522 CCCAAAACAG
11132532 TCCAGAAATTACATTTTGACCCCAAAACTTT
1 TCCA-AAATTACATTTTGACCCCAAAACTTT
* * *
11132563 TCTAAAATTACACTTTGACCCTAAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
*
11132593 TCCAAAATTACATTTTGACCCCTAAACTTT
1 TCCAAAATTACATTTTGACCCCAAAACTTT
* *
11132623 TCCATAATTTACCATTTT-ACCCCCAAAC-TT
1 TCCA-AAATTA-CATTTTGACCCCAAAACTTT
*
11132653 TCCAAAATTTCATTTTTGACC
1 TCCAAAATTACA-TTTTGACC
11132674 TCGGTTTCAC
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
28 2 0.02
29 8 0.08
30 63 0.66
31 17 0.18
32 6 0.06
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.37
Consensus pattern (30 bp):
TCCAAAATTACATTTTGACCCCAAAACTTT
Found at i:11132707 original size:59 final size:59
Alignment explanation
Indices: 11132631--11132943 Score: 297
Period size: 59 Copynumber: 5.3 Consensus size: 59
11132621 TTTCCATAAT
* * * *
11132631 TTACCATTTTACCCCCAAACTTTCCAAAATTTCATTTTTGACCTCGGTTTCACAAAAAA
1 TTACCATTTTGCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * * * *
11132690 TTACCATTTTGCCCCCAAACCTTCCAAAATTCCATTTTTAACCCCGTTTTCACCAAAAA
1 TTACCATTTTGCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * * * * * *
11132749 TTACCATTTTGCCCCTGAACCTTCCAAAAATTCCTTTTTAACCTCGATTTTACCAAAAT
1 TTACCATTTTGCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
** * * ** *
11132808 TTACTGTTTT-ACCCCGAACTTTCCAAAATTTCATTTTTGACCTCGGTTTTGCCAAAAT
1 TTACCATTTTGCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * * * * * * *
11132866 TTACCATTTTATCCCCCGAACTTTCCAAAGTTACAATTTTAGCCCCGATTTCTCC-AAAA
1 TTACCATTTT-GCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
* * *
11132925 TTACAAATTTGCCCTCGAA
1 TTACCATTTTGCCCCCGAA
11132944 AGTCCAAAAT
Statistics
Matches: 209, Mismatches: 43, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
58 55 0.26
59 121 0.58
60 33 0.16
ACGTcount: A:0.29, C:0.29, G:0.06, T:0.36
Consensus pattern (59 bp):
TTACCATTTTGCCCCCGAACTTTCCAAAATTTCATTTTTAACCTCGGTTTCACCAAAAA
Found at i:11132804 original size:29 final size:27
Alignment explanation
Indices: 11132770--11132876 Score: 88
Period size: 29 Copynumber: 3.7 Consensus size: 27
11132760 CCCCTGAACC
*
11132770 TTCCAAAAATTCCTTTTTAACCTCGATT
1 TTCCAAAATTTCCTTTTT-ACCTCGATT
* * *
11132798 TTACCAAAATTTACTGTTTTACCCCGAACT
1 TT-CCAAAATTTCCT-TTTTACCTCG-ATT
* *
11132828 TTCCAAAATTTCATTTTTGACCTCGGTT
1 TTCCAAAATTTCCTTTTT-ACCTCGATT
*
11132856 TTGCCAAAATTTACCATTTTA
1 TT-CCAAAATTT-CCTTTTTA
11132877 TCCCCCGAAC
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
28 9 0.15
29 40 0.65
30 13 0.21
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.42
Consensus pattern (27 bp):
TTCCAAAATTTCCTTTTTACCTCGATT
Found at i:11132913 original size:29 final size:29
Alignment explanation
Indices: 11132879--11132943 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
11132869 CCATTTTATC
* *
11132879 CCCCGAACTT-TCCAAAGTTACAATTTTAG
1 CCCCGAACTTCTCCAAAATTACAAATTT-G
*
11132908 CCCCG-ATTTCTCCAAAATTACAAATTTG
1 CCCCGAACTTCTCCAAAATTACAAATTTG
11132936 CCCTCGAA
1 CCC-CGAA
11132944 AGTCCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 7 0.23
29 22 0.73
30 1 0.03
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.29
Consensus pattern (29 bp):
CCCCGAACTTCTCCAAAATTACAAATTTG
Found at i:11132977 original size:28 final size:29
Alignment explanation
Indices: 11132859--11132980 Score: 90
Period size: 28 Copynumber: 4.2 Consensus size: 29
11132849 CTCGGTTTTG
* * * *
11132859 CCAAAATTTACCATTTTATCCCCCGAACTTT
1 CCAAAA-TTACAATTTTAGCCCTCG-ACTAT
* * *
11132890 CCAAAGTTACAATTTTAGCCC-CGATTTCT
1 CCAAAATTACAATTTTAGCCCTCGA-CTAT
* *
11132919 CCAAAATTACAAATTT-GCCCTCGA-AAGT
1 CCAAAATTACAATTTTAGCCCTCGACTA-T
*
11132947 CCAAAATTACCATTTT-GCCCTCGACTAT
1 CCAAAATTACAATTTTAGCCCTCGACTAT
11132975 CCAAAA
1 CCAAAA
11132981 GTCCCGTTTT
Statistics
Matches: 75, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
28 35 0.47
29 22 0.29
30 13 0.17
31 5 0.07
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (29 bp):
CCAAAATTACAATTTTAGCCCTCGACTAT
Found at i:11136602 original size:12 final size:11
Alignment explanation
Indices: 11136566--11136614 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
11136556 TCGACGTGTG
11136566 AAAAAAAATC-
1 AAAAAAAATCA
**
11136576 AAATCAAAT-A
1 AAAAAAAATCA
*
11136586 AAAAAAAGTCA
1 AAAAAAAATCA
11136597 AAAAAAAATCA
1 AAAAAAAATCA
11136608 AAAAAAA
1 AAAAAAA
11136615 GAGATGGGTC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
10 13 0.42
11 18 0.58
ACGTcount: A:0.80, C:0.08, G:0.02, T:0.10
Consensus pattern (11 bp):
AAAAAAAATCA
Found at i:11137486 original size:22 final size:21
Alignment explanation
Indices: 11137458--11137527 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 21
11137448 GATACAATGA
11137458 AGAAAAAAACAAATAAAAAAGG
1 AGAAAAAAACAAA-AAAAAAGG
**
11137480 AGAAAAAAAACAAAAAACAAAAA
1 AG-AAAAAAACAAAAAA-AAAGG
* *
11137503 AGAGAAAAAGAAAAAGAAAAGG
1 AGAAAAAAACAAAAA-AAAAGG
11137525 AGA
1 AGA
11137528 GGTCGAGGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 22 0.56
23 17 0.44
ACGTcount: A:0.79, C:0.04, G:0.16, T:0.01
Consensus pattern (21 bp):
AGAAAAAAACAAAAAAAAAGG
Found at i:11137490 original size:23 final size:25
Alignment explanation
Indices: 11137460--11137511 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
11137450 TACAATGAAG
* *
11137460 AAAAAAAC-AAATA-AAAAAGGAGA
1 AAAAAAACAAAAAACAAAAAAGAGA
11137483 AAAAAAACAAAAAACAAAAAAGAGA
1 AAAAAAACAAAAAACAAAAAAGAGA
11137508 AAAA
1 AAAA
11137512 GAAAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.32
24 4 0.16
25 13 0.52
ACGTcount: A:0.83, C:0.06, G:0.10, T:0.02
Consensus pattern (25 bp):
AAAAAAACAAAAAACAAAAAAGAGA
Found at i:11137517 original size:23 final size:25
Alignment explanation
Indices: 11137460--11137522 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 25
11137450 TACAATGAAG
* *
11137460 AAAAAAACAAATAAAAAAGGAGAAA
1 AAAAAAAAAAACAAAAAAGGAGAAA
11137485 AAAAACAAAAAACAAAAAA-GAGAAA
1 AAAAA-AAAAAACAAAAAAGGAGAAA
11137510 AAGAAAAAGAAAA
1 AA-AAAAA-AAAA
11137523 GGAGAGGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
25 15 0.45
26 18 0.55
ACGTcount: A:0.83, C:0.05, G:0.11, T:0.02
Consensus pattern (25 bp):
AAAAAAAAAAACAAAAAAGGAGAAA
Found at i:11138984 original size:101 final size:100
Alignment explanation
Indices: 11138782--11139004 Score: 297
Period size: 101 Copynumber: 2.2 Consensus size: 100
11138772 TCAGCACCAC
* * *
11138782 AAAACACAACAA-GGAAAGGTCTAAGTCACAATGGCAGACCGTGTACCTCAGAAGCATGACGGGA
1 AAAACACAA-AAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGA
* * ** *
11138846 TAGATCTAAGACCGCAATGGTGGATCTAGTACCGCA
65 AAGATCTAAGACCGCAACGGCAGATCCAGTACCGCA
* *
11138882 AAAACAGAAAAGGGAAAGGTCTAAGTCGCAACGGC-GAACCGTGTACCTCAAAAGACACGACGGG
1 AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAG-ACCGTGTACCTCAAAAG-CACGACGGG
11138946 AAAGATCTAAGACCGCAACGGCAGATCCAGTACCGCA
64 AAAGATCTAAGACCGCAACGGCAGATCCAGTACCGCA
* *
11138983 AAAAGACAAAAGGGAAAAGTCT
1 AAAACACAAAAGGGAAAGGTCT
11139005 TTATCTCTCT
Statistics
Matches: 107, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
99 3 0.03
100 45 0.42
101 59 0.55
ACGTcount: A:0.40, C:0.22, G:0.25, T:0.13
Consensus pattern (100 bp):
AAAACACAAAAGGGAAAGGTCTAAGTCACAACGGCAGACCGTGTACCTCAAAAGCACGACGGGAA
AGATCTAAGACCGCAACGGCAGATCCAGTACCGCA
Found at i:11138985 original size:51 final size:49
Alignment explanation
Indices: 11138839--11138999 Score: 137
Period size: 51 Copynumber: 3.2 Consensus size: 49
11138829 TCAGAAGCAT
* * * *
11138839 GACGGGATAGATCTAAGACCGCAATGGTGGATCTAGTACCGCAAAA-ACA
1 GACGGGAAAGATCTAAGACCGCAACGG-CGATCCAGTACCGCAAAAGACA
* * * * * *
11138888 GAAAAGGGAAAGGTCTAAG-TCGCAACGGCGAACCGTGTACCTCAAAAGACA
1 G--ACGGGAAAGATCTAAGACCGCAACGGCGATCC-AGTACCGCAAAAGACA
11138939 CGACGGGAAAGATCTAAGACCGCAACGGCAGATCCAGTACCGCAAAAAGACA
1 -GACGGGAAAGATCTAAGACCGCAACGGC-GATCCAGTACCGC-AAAAGACA
* *
11138991 AAAGGGAAA
1 GACGGGAAA
11139000 AGTCTTTATC
Statistics
Matches: 86, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
49 4 0.05
50 31 0.36
51 38 0.44
52 13 0.15
ACGTcount: A:0.40, C:0.22, G:0.27, T:0.11
Consensus pattern (49 bp):
GACGGGAAAGATCTAAGACCGCAACGGCGATCCAGTACCGCAAAAGACA
Found at i:11139100 original size:40 final size:40
Alignment explanation
Indices: 11139056--11139287 Score: 135
Period size: 40 Copynumber: 5.2 Consensus size: 40
11139046 AATGTCAATT
11139056 TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
** *
11139096 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
1 TTTATCCTCT-TGAAGTTATAGTAA-AGT----T---GGAT--AATG---AATC
*
11139149 TTTATCCTCTTGAAGTTATATTAAAGTTGGATAATGAATC
1 TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
** *
11139189 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATT
1 TTTATCCTCT-TGAAGTTATAGTAA-AGT----T---GGAT--AATG--A-ATC
11139242 TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
1 TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
11139282 TTTATC
1 TTTATC
11139288 TCACTGAAGT
Statistics
Matches: 148, Mismatches: 14, Indels: 60
0.67 0.06 0.27
Matches are distributed among these distances:
39 8 0.05
40 48 0.32
41 7 0.05
43 8 0.05
45 6 0.04
48 6 0.04
50 8 0.05
52 7 0.05
53 42 0.28
54 8 0.05
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (40 bp):
TTTATCCTCTTGAAGTTATAGTAAAGTTGGATAATGAATC
Found at i:11139163 original size:53 final size:53
Alignment explanation
Indices: 11139096--11139265 Score: 172
Period size: 53 Copynumber: 3.5 Consensus size: 53
11139086 ATAATGAATC
11139096 TTTAT-CTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
1 TTTATCCTCT-TGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
* ** *
11139149 TTTATCCTCTTGAAGTTATATTAA-AGT----T---GGAT--AATG---AATC
1 TTTATCCTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
*
11139189 TTTATCTCTC-TGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATT
1 TTTATC-CTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
11139242 TTTATCCTCTTGAAGTTATAGTAA
1 TTTATCCTCTTGAAGTTATAGTAA
11139266 AGTTGGATAA
Statistics
Matches: 92, Mismatches: 9, Indels: 32
0.69 0.07 0.24
Matches are distributed among these distances:
40 22 0.24
41 6 0.07
43 4 0.04
45 3 0.03
48 3 0.03
50 4 0.04
52 6 0.07
53 40 0.43
54 4 0.04
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (53 bp):
TTTATCCTCTTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATT
Found at i:11139195 original size:93 final size:93
Alignment explanation
Indices: 11139002--11139325 Score: 546
Period size: 93 Copynumber: 3.5 Consensus size: 93
11138992 AAGGGAAAAG
* *
11139002 TCTTTATCTCTCTGAAGTTATAGTAAGAGCAAGATAAAGCTTTAAATGTC-AATTTTTATCCTCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
11139066 TGAAGTTATAGTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
11139094 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
*
11139159 TGAAGTTATATTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
*
11139187 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAGATTTTTATCCTCT
1 TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
11139252 TGAAGTTATAGTAAAGTTGGATAATGAA
66 TGAAGTTATAGTAAAGTTGGATAATGAA
* * *
11139280 TCTTTATCTCACTGAAGTTGA-AGTAAGAGCT-AGATAAGGCATCAAA
1 TCTTTATCTCTCTGAAGTT-ATAGTAAGAG-TAAGATAAAGCTTCAAA
11139326 CATCATTTTC
Statistics
Matches: 221, Mismatches: 8, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
92 48 0.22
93 171 0.77
94 2 0.01
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (93 bp):
TCTTTATCTCTCTGAAGTTATAGTAAGAGTAAGATAAAGCTTCAAATGTCAAATTTTTATCCTCT
TGAAGTTATAGTAAAGTTGGATAATGAA
Found at i:11139341 original size:93 final size:92
Alignment explanation
Indices: 11138999--11139913 Score: 802
Period size: 92 Copynumber: 9.9 Consensus size: 92
11138989 CAAAAGGGAA
* * * * **
11138999 AAGTCTTTATCTCTCTGAAGTT-ATAGTAAGAGCAAGATAAAGCTTTAAATGTCAATTTT--TAT
1 AAGTCTTTATCTCTCTGAAATTGA-AGTAAGAGCTAGAT-AAGCATCAAACATC-ATTTTCCTAT
* * *
11139061 CCTCTTGAAGTT-ATAGTAAAGTTGGATAATG
63 CCTCTTGAAATTGA-AGTAAAGCTGGAT-ATC
* * **
11139092 AA-TCTTTATCTCTCTGAAGTT-ATAGTAAGAG-TAAGATAAAGCTTCAAATGTCAAATTTT--T
1 AAGTCTTTATCTCTCTGAAATTGA-AGTAAGAGCT-AGAT-AAGCATCAAACATC--ATTTTCCT
* * * *
11139152 ATCCTCTTGAAGTT-ATATTAAAGTTGGATAATG
61 ATCCTCTTGAAATTGA-AGTAAAGCTGGAT-ATC
* * **
11139185 AA-TCTTTATCTCTCTGAAGTT-ATAGTAAGAG-TAAGATAAAGCTTCAAATGTCAGATTTT--T
1 AAGTCTTTATCTCTCTGAAATTGA-AGTAAGAGCT-AGAT-AAGCATCAAACATC--ATTTTCCT
* * *
11139245 ATCCTCTTGAAGTT-ATAGTAAAGTTGGATAATG
61 ATCCTCTTGAAATTGA-AGTAAAGCTGGAT-ATC
* *
11139278 AA-TCTTTATCTCACTGAAGTTGAAGTAAGAGCTAGATAAGGCATCAAACATCATTTTCCTATCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGATAA-GCATCAAACATCA--TT--T-TCC
*
11139342 TATCCTCTTGAAATTGAAGTAGAGCTGGATATC
60 TATCCTCTTGAAATTGAAGTAAAGCTGGATATC
11139375 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGATAAAGCATCAAACATCATTTTCCTATCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGAT-AAGCATCAAACATCATTTTCCTATCC
*
11139440 TCTTGAAATTGAAGTAAAGCTGGATAAC
65 TCTTGAAATTGAAGTAAAGCTGGATATC
* ** * * *
11139468 AAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCA-CCAACATCATTTTCCTATCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGAT-AAGCATCAAACATCATTTTCCTATCC
*
11139532 TCTTGAAATTGAAGTAGAGCTGGATATC
65 TCTTGAAATTGAAGTAAAGCTGGATATC
* ** * * *
11139560 AAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCA-CCAACATCATTTTCCTATCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGAT-AAGCATCAAACATCATTTTCCTATCC
* *
11139624 TCTTGAAATTGAAGTAGAGTTGGATATC
65 TCTTGAAATTGAAGTAAAGCTGGATATC
* * * *
11139652 AAGCCTTTGTCTCTCTGAAATTGAAGTAAGAG-TAAGATGAAACA-CCAACATCATTTTCCTATC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCT-AGAT-AAGCATCAAACATCATTTTCCTATC
*
11139715 CTCTTGAAATTGAAGTAGAGCTGGATATC
64 CTCTTGAAATTGAAGTAAAGCTGGATATC
* * * **
11139744 AAGCCTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCA-CCGACATC-TTTTCCTATCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGAT-AAGCATCAAACATCATTTTCCTATCC
*
11139807 TCTTGAAATTGAAGTAGAGCTGGATATC
65 TCTTGAAATTGAAGTAAAGCTGGATATC
* ** * * * * *
11139835 AAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCA-CCAACATCATTTTCGT-CCC
1 AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGAT-AAGCATCAAACATCATTTTCCTATCC
11139898 TC-TGAAATTGAAGTAA
65 TCTTGAAATTGAAGTAA
11139914 GAGTAAGATG
Statistics
Matches: 763, Mismatches: 41, Indels: 39
0.91 0.05 0.05
Matches are distributed among these distances:
90 13 0.02
91 93 0.12
92 325 0.43
93 247 0.32
94 3 0.00
95 1 0.00
96 3 0.00
97 4 0.01
98 71 0.09
99 3 0.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (92 bp):
AAGTCTTTATCTCTCTGAAATTGAAGTAAGAGCTAGATAAGCATCAAACATCATTTTCCTATCCT
CTTGAAATTGAAGTAAAGCTGGATATC
Found at i:11139393 original size:98 final size:92
Alignment explanation
Indices: 11139281--11139912 Score: 948
Period size: 92 Copynumber: 6.8 Consensus size: 92
11139271 GATAATGAAT
* * * * *
11139281 CTTTATCTCACTGAAGTTGAAGTAAGAGCTAGAT-AAGGCATCAAACATCATTTTCCTATCCTAT
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAA-GCA-CCAACATCA--TT--T-TCCTAT
*
11139345 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGT
59 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGC
* * * *
11139379 CTTTATCTCTCTGAAATTGAAGTAAGAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTT
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCA-CCAACATCATTTTCCTATCCTCTT
* *
11139444 GAAATTGAAGTAAAGCTGGATAACAAGC
65 GAAATTGAAGTAGAGCTGGATATCAAGC
* *
11139472 CTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
11139537 AAATTGAAGTAGAGCTGGATATCAAGC
66 AAATTGAAGTAGAGCTGGATATCAAGC
* *
11139564 CTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
*
11139629 AAATTGAAGTAGAGTTGGATATCAAGC
66 AAATTGAAGTAGAGCTGGATATCAAGC
* *
11139656 CTTTGTCTCTCTGAAATTGAAGTAAGAGTAAGATGAAACACCAACATCATTTTCCTATCCTCTTG
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
11139721 AAATTGAAGTAGAGCTGGATATCAAGC
66 AAATTGAAGTAGAGCTGGATATCAAGC
*
11139748 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCCTCTTG
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
11139812 AAATTGAAGTAGAGCTGGATATCAAGC
66 AAATTGAAGTAGAGCTGGATATCAAGC
* * * *
11139839 CTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCGT-CCCTC-TG
1 CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
11139902 AAATTGAAGTA
66 AAATTGAAGTA
11139913 AGAGTAAGAT
Statistics
Matches: 505, Mismatches: 27, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
90 13 0.03
91 92 0.18
92 278 0.55
93 72 0.14
94 1 0.00
96 2 0.00
98 45 0.09
99 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (92 bp):
CTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTCTTG
AAATTGAAGTAGAGCTGGATATCAAGC
Found at i:11139488 original size:40 final size:41
Alignment explanation
Indices: 11139438--11139863 Score: 126
Period size: 40 Copynumber: 9.5 Consensus size: 41
11139428 ATTTTCCTAT
11139438 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
** * * *
11139479 CCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA--AGC--C---TTCGT-C
* *
11139530 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
** * * *
11139571 CCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA--AGC--C---TTCGT-C
* * * *
11139622 CCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* * * * *
11139663 TCTC-TGAAATTGAAGTAAGAG-TAAGATGAAACACCAACATCATTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCT-GGAT--AACA--AGC--C---TTCGT-C
* * *
11139714 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTTGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
* ** * * *
11139755 TCTC-TGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATCTTTTCCTAT
1 CCTCTTGAAATTGAAGTAA-AGCTGGAT-AA-CA-AG-C--C--TTCGT-C
* *
11139805 CCTCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTC
1 CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
11139846 CCTC-TGAAATTGAAGTAA
1 CCTCTTGAAATTGAAGTAA
11139864 GAGCAAGATG
Statistics
Matches: 274, Mismatches: 62, Indels: 99
0.63 0.14 0.23
Matches are distributed among these distances:
40 67 0.24
41 41 0.15
42 18 0.07
43 9 0.03
44 2 0.01
45 10 0.04
46 1 0.00
47 11 0.04
48 2 0.01
49 11 0.04
50 22 0.08
51 40 0.15
52 40 0.15
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (41 bp):
CCTCTTGAAATTGAAGTAAAGCTGGATAACAAGCCTTCGTC
Found at i:11139880 original size:275 final size:277
Alignment explanation
Indices: 11139339--11139917 Score: 990
Period size: 275 Copynumber: 2.1 Consensus size: 277
11139329 CATTTTCCTA
* *
11139339 TCCTATCCTCTTGAAATTGAAGTAGAGCTGGATATCAAGTCTTTATCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
11139404 GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
66 GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
11139469 AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
131 AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
11139534 TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
196 TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
11139599 AAGCACCAACATCATTT
261 AAGCACCAACATCATTT
*
11139616 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTGTCTCTCTGAAATTGAAGTAA
1 TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
* * *
11139681 GAG-TAAGATGAAA-CA-CCAACATCATTTTCCTATCCTCTTGAAATTGAAGTAGAGCTGGATAT
66 GAGCT-AGAT-AAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAA
* * *
11139743 CAAGCCTTTGTCTCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCGACATC-TTTTCCTATCC
129 CAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCC
11139807 TCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGA
194 TCTTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGA
11139872 TGAAGCACCAACATCATTT
259 TGAAGCACCAACATCATTT
* *
11139891 TCGT-CCCTC-TGAAATTGAAGTAAGAGT
1 TCCTATCCTCTTGAAATTGAAGT-AGAGT
11139918 AAGATGAAGC
Statistics
Matches: 288, Mismatches: 11, Indels: 9
0.94 0.04 0.03
Matches are distributed among these distances:
273 12 0.04
274 9 0.03
275 98 0.34
276 95 0.33
277 71 0.25
278 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (277 bp):
TCCTATCCTCTTGAAATTGAAGTAGAGTTGGATATCAAGCCTTTATCTCTCTGAAATTGAAGTAA
GAGCTAGATAAAGCATCAAACATCATTTTCCTATCCTCTTGAAATTGAAGTAAAGCTGGATAACA
AGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATTTTCCTATCCTC
TTGAAATTGAAGTAGAGCTGGATATCAAGCCTTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATG
AAGCACCAACATCATTT
Found at i:11139899 original size:50 final size:49
Alignment explanation
Indices: 11139840--11139971 Score: 212
Period size: 50 Copynumber: 2.7 Consensus size: 49
11139830 ATATCAAGCC
11139840 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCATT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATC-TT
*
11139890 TTCGTCCCTCTGAAATTGAAGTAAGAGTAAGATGAAGCACCAACATCTT
1 TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
* *
11139939 TTCCTATCCTCTGAAATTGAA-TAAGAGCAAGAT
1 TTCGT-CCCTCTGAAATTGAAGTAAGAGCAAGAT
11139972 AAAACCTCGA
Statistics
Matches: 77, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
49 17 0.22
50 60 0.78
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (49 bp):
TTCGTCCCTCTGAAATTGAAGTAAGAGCAAGATGAAGCACCAACATCTT
Found at i:11140284 original size:12 final size:11
Alignment explanation
Indices: 11140255--11140290 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
11140245 TAAAATTATT
11140255 TTAATTTTAAA
1 TTAATTTTAAA
*
11140266 TTTATTTTAAA
1 TTAATTTTAAA
11140277 TTCAATTTTAAA
1 TT-AATTTTAAA
11140289 TT
1 TT
11140291 TAAATTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTAATTTTAAA
Found at i:11141714 original size:30 final size:28
Alignment explanation
Indices: 11141678--11141733 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
11141668 TTGGCCGGCC
11141678 AAGGAGAAGAAAAAAAGGGAAGAAGAGAGT
1 AAGGAG-AGAAAAAAAGGG-AGAAGAGAGT
* *
11141708 AAGGAGAGAAAGAAAGGGGGAAGAGA
1 AAGGAGAGAAAAAAAGGGAGAAGAGA
11141734 AAGTTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.29
29 11 0.46
30 6 0.25
ACGTcount: A:0.57, C:0.00, G:0.41, T:0.02
Consensus pattern (28 bp):
AAGGAGAGAAAAAAAGGGAGAAGAGAGT
Found at i:11142247 original size:30 final size:30
Alignment explanation
Indices: 11142211--11142347 Score: 161
Period size: 30 Copynumber: 4.5 Consensus size: 30
11142201 AATAGTCTAG
*
11142211 AAATTACATTTTGACCCTAAAACTTTTCTA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
* *
11142241 AAATTACACTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
*
11142271 AAATTACATTTTGACCCTTAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCA
***
11142301 AAATTTACCATTTT-ACCCCCGAAC-TTTCCA
1 AAA-TTA-CATTTTGACCCTAAAACTTTTCCA
*
11142331 AAATTTCATTCTTGACC
1 AAATTACATT-TTGACC
11142348 TCGGTTTCAC
Statistics
Matches: 93, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
28 4 0.04
29 4 0.04
30 69 0.74
31 10 0.11
32 6 0.06
ACGTcount: A:0.34, C:0.26, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATTACATTTTGACCCTAAAACTTTTCCA
Found at i:11142282 original size:60 final size:60
Alignment explanation
Indices: 11142211--11142519 Score: 183
Period size: 59 Copynumber: 5.2 Consensus size: 60
11142201 AATAGTCTAG
*
11142211 AAATTACATTTTGACCCTAAAACTTTTCTAAAA-TTA-CACTTTGACCCCAAAACTTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCAAAATTTACCA-TTTGACCCCAAAAC-TTTCCA
* * **
11142271 AAATTACATTTTGACCCTTAAACTTTTCCAAAATTTACCATTTTACCCCCGAACTTTCCA
1 AAATTACATTTTGACCCTAAAACTTTTCCAAAATTTACCATTTGACCCCAAAACTTTCCA
* *** * * ** *
11142331 AAATTTCATTCTTGA-CCT--CGGTTTCACCAAAAATTACCATTTTG-CCCCTGAACCTTCCA
1 AAATTACATT-TTGACCCTAAAACTTT-TCCAAAATTTACCA-TTTGACCCCAAAACTTTCCA
* * ** * * **
11142390 AAATTCCATTTTAACCC--CGA-TTTAACCAAAATTTACCATTTTACCCCCGAACTTTCCA
1 AAATTACATTTTGACCCTAAAACTTT-TCCAAAATTTACCATTTGACCCCAAAACTTTCCA
** ** * **
11142448 AAATTTTATTTTTGA-CCT-CGA-TTTTACCAAAATTTACCATTTTACCCCCGAACTTTCCA
1 AAATTACA-TTTTGACCCTAAAACTTTT-CCAAAATTTACCATTTGACCCCAAAACTTTCCA
*
11142507 AAGTTACAATTTT
1 AAATTAC-ATTTT
11142520 AGCCCGATTT
Statistics
Matches: 207, Mismatches: 30, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
57 3 0.01
58 43 0.21
59 88 0.43
60 53 0.26
61 18 0.09
62 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (60 bp):
AAATTACATTTTGACCCTAAAACTTTTCCAAAATTTACCATTTGACCCCAAAACTTTCCA
Found at i:11142389 original size:59 final size:58
Alignment explanation
Indices: 11142298--11142508 Score: 305
Period size: 59 Copynumber: 3.6 Consensus size: 58
11142288 TTAAACTTTT
* *
11142298 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTCTTGACCTCGGTTTCA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATT-TTGACCTCGATTTAA
* * * * * * *
11142357 CCAAAAATTACCATTTTGCCCCTGAACCTTCCAAAATTCCATTTTAACCCCGATTTAA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTTTGACCTCGATTTAA
* *
11142415 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTTATTTTTGACCTCGATTTTA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCA-TTTTGACCTCGATTTAA
11142474 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAA
11142509 GTTACAATTT
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
58 46 0.35
59 87 0.65
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (58 bp):
CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTTTGACCTCGATTTAA
Found at i:11142430 original size:117 final size:117
Alignment explanation
Indices: 11142298--11142553 Score: 354
Period size: 117 Copynumber: 2.2 Consensus size: 117
11142288 TTAAACTTTT
*
11142298 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTCTTGACCTCGGTTTCACCAAAA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTCTTGACCTCGATTTCACCAAAA
* * *
11142363 ATTACCATTTTGCCCCTGAACCTTCCAAAATT-CCATTTTAACCCCGATTTAA
66 ATTACCATTTTACCCCCGAACCTTCCAAAATTACAATTTT-ACCCCGATTTAA
* * *
11142415 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTTATTTTTGACCTCGATTTTACCAAAA
1 CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTCTTGACCTCGATTTCACCAAAA
* * * * **
11142480 TTTACCATTTTACCCCCGAACTTTCCAAAGTTACAATTTTAGCCCGATTTCT
66 ATTACCATTTTACCCCCGAACCTTCCAAAATTACAATTTTACCCCGATTTAA
* *
11142532 CCAAAA-TTACAATTTTGCCCCC
1 CCAAAATTTACCATTTTACCCCC
11142554 AAAAGTCCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
116 14 0.11
117 103 0.84
118 6 0.05
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.35
Consensus pattern (117 bp):
CCAAAATTTACCATTTTACCCCCGAACTTTCCAAAATTTCATTCTTGACCTCGATTTCACCAAAA
ATTACCATTTTACCCCCGAACCTTCCAAAATTACAATTTTACCCCGATTTAA
Found at i:11142518 original size:29 final size:29
Alignment explanation
Indices: 11142265--11142610 Score: 175
Period size: 28 Copynumber: 11.9 Consensus size: 29
11142255 CCCCAAAACT
**
11142265 TTTCCAAAATTA-CATTTTGA-CCCTTAAA
1 TTTCCAAAATTACCATTTT-ACCCCCGAAA
*
11142293 CTTTTCCAAAATTTACCATTTTACCCCCGAAC
1 --TTTCCAAAA-TTACCATTTTACCCCCGAAA
* * *
11142325 TTTCCAAAATT-TCATTCTTGA-CCTCG--G
1 TTTCCAAAATTACCATT-TT-ACCCCCGAAA
* * *
11142352 TTTCACCAAAAATTACCATTTTGCCCCTGAAC
1 TTT--CC-AAAATTACCATTTTACCCCCGAAA
* *
11142384 CTTCCAAAATT-CCATTTTAACCCCG--A
1 TTTCCAAAATTACCATTTTACCCCCGAAA
*
11142410 TTTAACCAAAATTTACCATTTTACCCCCGAAC
1 TTT--CCAAAA-TTACCATTTTACCCCCGAAA
** * *
11142442 TTTCCAAAATT-TTATTTTTGA-CCTCG-AT
1 TTTCCAAAATTACCA-TTTT-ACCCCCGAAA
*
11142470 TTTACCAAAATTTACCATTTTACCCCCGAAC
1 TTT-CCAAAA-TTACCATTTTACCCCCGAAA
* * * *
11142501 TTTCCAAAGTTACAATTTTA-GCCCG-AT
1 TTTCCAAAATTACCATTTTACCCCCGAAA
* *
11142528 TTCTCCAAAATTACAATTTTGCCCCC-AAA
1 TT-TCCAAAATTACCATTTTACCCCCGAAA
** *
11142557 AGTCCAAAATTACCATTTTGCCCCC-AAA
1 TTTCCAAAATTACCATTTTACCCCCGAAA
**
11142585 AGTCCAAAATTACCATTTTACCCCCG
1 TTTCCAAAATTACCATTTTACCCCCG
11142611 GGTATCCAAA
Statistics
Matches: 248, Mismatches: 39, Indels: 59
0.72 0.11 0.17
Matches are distributed among these distances:
26 2 0.01
27 6 0.02
28 95 0.38
29 49 0.20
30 67 0.27
31 13 0.05
32 16 0.06
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.34
Consensus pattern (29 bp):
TTTCCAAAATTACCATTTTACCCCCGAAA
Found at i:11150208 original size:54 final size:54
Alignment explanation
Indices: 11150109--11150240 Score: 169
Period size: 54 Copynumber: 2.4 Consensus size: 54
11150099 TCTACATAAA
* * * *
11150109 AGTATTTCAACATGACAATTGATTTAAATATATAAAAATATATTCAAAAGAAGC-
1 AGTATTCCAACATGACAATCGA-TTAAATATAAAAAAATAGATTCAAAAGAAGCT
*
11150163 AGTATTCCAACATGACAATCGATTAAATATAAAAACAATCGATTCAAAAGAAGCT
1 AGTATTCCAACATGACAATCGATTAAATATAAAAA-AATAGATTCAAAAGAAGCT
* *
11150218 A-TATTCCATCATAACAATCGATT
1 AGTATTCCAACATGACAATCGATT
11150241 CAATCCAGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 12 0.17
54 56 0.81
55 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (54 bp):
AGTATTCCAACATGACAATCGATTAAATATAAAAAAATAGATTCAAAAGAAGCT
Found at i:11159907 original size:34 final size:34
Alignment explanation
Indices: 11159827--11159908 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11159817 TAAACATATA
*
11159827 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11159861 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11159895 AACAATCGATTCAA
1 AACAATCGATTCAA
11159909 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11165557 original size:54 final size:56
Alignment explanation
Indices: 11165436--11165568 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11165426 ATCTGGATTG
* * * *
11165436 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11165491 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11165545 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11165569 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11166945 original size:34 final size:34
Alignment explanation
Indices: 11166865--11166946 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11166855 TAAACATATA
*
11166865 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11166899 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11166933 AACAATCGATTCAA
1 AACAATCGATTCAA
11166947 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11172588 original size:54 final size:56
Alignment explanation
Indices: 11172467--11172599 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11172457 ATCTGGATTG
* * * *
11172467 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11172522 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11172576 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11172600 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11173975 original size:34 final size:34
Alignment explanation
Indices: 11173895--11173976 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11173885 TAAACATATA
*
11173895 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11173929 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11173963 AACAATCGATTCAA
1 AACAATCGATTCAA
11173977 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11179623 original size:54 final size:56
Alignment explanation
Indices: 11179502--11179634 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11179492 ATCTGGATTG
* * * *
11179502 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11179557 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11179611 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11179635 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11180925 original size:34 final size:35
Alignment explanation
Indices: 11180842--11180926 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 35
11180832 TAAACATATA
*
11180842 AACAATCGATTCAAAAGAAGAAACAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAG--ACAATATTCCAACAT
* * * * *
11180879 GATAATCCATTCAAAAGAAG-CAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGACAATATTCCAACAT
11180913 AACAATCGATTCAA
1 AACAATCGATTCAA
11180927 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
34 22 0.56
37 17 0.44
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (35 bp):
AACAATCGATTCAAAAGAAGACAATATTCCAACAT
Found at i:11184032 original size:54 final size:56
Alignment explanation
Indices: 11183911--11184043 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11183901 ATCTGGATTG
* * * *
11183911 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11183966 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11184020 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11184044 TTATGTAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11185410 original size:34 final size:34
Alignment explanation
Indices: 11185330--11185411 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11185320 TAAACATATA
*
11185330 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11185364 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11185398 AACAATCGATTCAA
1 AACAATCGATTCAA
11185412 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11189000 original size:54 final size:56
Alignment explanation
Indices: 11188879--11189011 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11188869 ATCTGGATTG
* * * *
11188879 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11188934 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11188988 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11189012 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11190384 original size:34 final size:34
Alignment explanation
Indices: 11190304--11190385 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11190294 TAAACATATA
*
11190304 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11190338 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11190372 AACAATCGATTCAA
1 AACAATCGATTCAA
11190386 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11197340 original size:34 final size:34
Alignment explanation
Indices: 11197260--11197341 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11197250 TAAACATATA
*
11197260 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11197294 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11197328 AACAATCGATTCAA
1 AACAATCGATTCAA
11197342 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11202990 original size:54 final size:56
Alignment explanation
Indices: 11202869--11203001 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11202859 ATCTGGATTG
* * * *
11202869 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11202924 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11202978 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11203002 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11204378 original size:34 final size:34
Alignment explanation
Indices: 11204298--11204379 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11204288 TAAACATATA
*
11204298 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11204332 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11204366 AACAATCGATTCAA
1 AACAATCGATTCAA
11204380 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11209980 original size:55 final size:53
Alignment explanation
Indices: 11209906--11210034 Score: 161
Period size: 52 Copynumber: 2.4 Consensus size: 53
11209896 ATCTGGATTG
* * * *
11209906 AATCGATTGTTATGATGGAATATAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATAT-GCTTCTTTTGAATAGATT-TTTATATATTTA
* *
11209961 AATCGATTGTCATGTTGGAA-CTGCTTCTTTTGAATATATTTTTATATATTTA
1 AATCGATTGTCATGTTGGAATATGCTTCTTTTGAATAGATTTTTATATATTTA
* *
11210013 AATCAATTGTCATGTTGAAATA
1 AATCGATTGTCATGTTGGAATA
11210035 CTTTTATGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
52 29 0.45
53 16 0.25
54 1 0.02
55 18 0.28
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (53 bp):
AATCGATTGTCATGTTGGAATATGCTTCTTTTGAATAGATTTTTATATATTTA
Found at i:11211403 original size:33 final size:33
Alignment explanation
Indices: 11211324--11211404 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
11211314 TAAACATATA
*
11211324 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTC-AAAGAAGCAATATTCCAACAT
* * * * *
11211358 GATAATCCATTCAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAGAAGCAATATTCCAACAT
11211391 AACAATCGATTCAA
1 AACAATCGATTCAA
11211405 TCCAAATTTG
Statistics
Matches: 38, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (33 bp):
AACAATCGATTCAAAGAAGCAATATTCCAACAT
Found at i:11212762 original size:34 final size:34
Alignment explanation
Indices: 11212682--11212763 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11212672 TAAACATATA
*
11212682 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11212716 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11212750 AACAATCGATTCAA
1 AACAATCGATTCAA
11212764 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11218384 original size:54 final size:56
Alignment explanation
Indices: 11218263--11218395 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11218253 ATCTGGATTG
* * * *
11218263 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11218318 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11218372 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11218396 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11219767 original size:34 final size:34
Alignment explanation
Indices: 11219687--11219768 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11219677 TAAACATATA
*
11219687 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11219721 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11219755 AACAATCGATTCAA
1 AACAATCGATTCAA
11219769 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11227666 original size:54 final size:56
Alignment explanation
Indices: 11227545--11227677 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11227535 ATCTGGATTG
* * * *
11227545 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11227600 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11227654 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11227678 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11229048 original size:34 final size:34
Alignment explanation
Indices: 11228968--11229049 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11228958 TAAACATATA
*
11228968 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11229002 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11229036 AACAATCGATTCAA
1 AACAATCGATTCAA
11229050 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11234698 original size:51 final size:55
Alignment explanation
Indices: 11234579--11234707 Score: 171
Period size: 55 Copynumber: 2.4 Consensus size: 55
11234569 ATCTGGATTG
* * *
11234579 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATC-ATTGATTTTATATTTA
11234634 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAAT-A-T-ATTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATCATTGATTTTATATTTA
*
11234685 AATCAATTGTCATGTT-GAATACT
1 AATCGATTGTCATGTTGGAATACT
11234708 TTTTATGTAG
Statistics
Matches: 69, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
50 7 0.10
51 26 0.38
52 1 0.01
53 1 0.01
55 33 0.48
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.15, T:0.47
Consensus pattern (55 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATCATTGATTTTATATTTA
Found at i:11237159 original size:55 final size:53
Alignment explanation
Indices: 11237085--11237216 Score: 167
Period size: 55 Copynumber: 2.5 Consensus size: 53
11237075 ATCTGGATTG
* * * *
11237085 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTT
1 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATAGATT-TTTATATATTT
*
11237139 AAATCGATTGTCATGTTGGAATACTGCTTCTTTTGAATATATTTTTATATATTT
1 -AATCGATTGTCATGTTGGAATACTGCTTCTTTTGAATAGATTTTTATATATTT
* *
11237193 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11237217 TTTATGTAGA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 22 0.32
54 10 0.14
55 36 0.52
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (53 bp):
AATCGATTGTCATGTTGGAATACTGCTTCTTTTGAATAGATTTTTATATATTT
Found at i:11237216 original size:53 final size:55
Alignment explanation
Indices: 11237109--11237216 Score: 157
Period size: 53 Copynumber: 2.0 Consensus size: 55
11237099 ATGGAATATA
* * * *
11237109 GCTTCTTTTGAATCGATTGTTTTTATATTTAAATCGATTGTCATGTTGGAATACT
1 GCTTCTTTTGAATAGATTGTTTATATATTTAAATCAATTGTCATGTTGAAATACT
*
11237164 GCTTCTTTTGAATATATT-TTTATATATTT-AATCAATTGTCATGTTGAAATACT
1 GCTTCTTTTGAATAGATTGTTTATATATTTAAATCAATTGTCATGTTGAAATACT
11237217 TTTATGTAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
53 22 0.46
54 10 0.21
55 16 0.33
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (55 bp):
GCTTCTTTTGAATAGATTGTTTATATATTTAAATCAATTGTCATGTTGAAATACT
Found at i:11240325 original size:54 final size:56
Alignment explanation
Indices: 11240204--11240336 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11240194 ATCTGGATTG
* * * *
11240204 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11240259 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11240313 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11240337 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11241710 original size:34 final size:34
Alignment explanation
Indices: 11241630--11241711 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
11241620 TAAACATATA
*
11241630 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
* * * * *
11241664 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGCAATATTCCAACAT
11241698 AACAATCGATTCAA
1 AACAATCGATTCAA
11241712 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGCAATATTCCAACAT
Found at i:11247326 original size:54 final size:56
Alignment explanation
Indices: 11247205--11247337 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11247195 ATCTGGATTG
* * * *
11247205 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11247260 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11247314 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11247338 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11248713 original size:34 final size:34
Alignment explanation
Indices: 11248634--11248714 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
11248624 AAACATATAG
* *
11248634 ACAATCGATTCAAAAGAAGCAGTATTCCAACATG
1 ACAATCGATTCAAAAGAAGCAATATTCCAACATA
* * * *
11248668 ATAATCCATTCAAAAGAAGCAATATTCTAGCATA
1 ACAATCGATTCAAAAGAAGCAATATTCCAACATA
11248702 ACAATCGATTCAA
1 ACAATCGATTCAA
11248715 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
ACAATCGATTCAAAAGAAGCAATATTCCAACATA
Found at i:11250114 original size:34 final size:34
Alignment explanation
Indices: 11250034--11250115 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
11250024 TAAACATATA
* *
11250034 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGAAATATTCCAACAT
* * * * *
11250068 GATAATCCATTCAAAAGAAGAAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGAAATATTCCAACAT
11250102 AACAATCGATTCAA
1 AACAATCGATTCAA
11250116 TCCAAATTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGAAATATTCCAACAT
Found at i:11255678 original size:52 final size:54
Alignment explanation
Indices: 11255617--11255722 Score: 155
Period size: 52 Copynumber: 2.0 Consensus size: 54
11255607 ATGGAATATA
* *
11255617 GCTTCTTTTGAATCGATTGTTT-TATATTTAAATCGATTGTC-TGTTG-AATACT
1 GCTTCTTTTGAATAGATT-TTTATATATTTAAATCAATTGTCATGTTGAAATACT
*
11255669 GCTTCTTTTGAATATATTTTTATATATTTAAATCAATTGTCATGTTGAAATACT
1 GCTTCTTTTGAATAGATTTTTATATATTTAAATCAATTGTCATGTTGAAATACT
11255723 TTTATGTAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
51 3 0.06
52 34 0.71
53 5 0.10
54 6 0.12
ACGTcount: A:0.27, C:0.10, G:0.12, T:0.50
Consensus pattern (54 bp):
GCTTCTTTTGAATAGATTTTTATATATTTAAATCAATTGTCATGTTGAAATACT
Found at i:11260108 original size:54 final size:56
Alignment explanation
Indices: 11259987--11260119 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11259977 ATCTGGATTG
* * * *
11259987 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11260042 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11260096 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11260120 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11261495 original size:34 final size:34
Alignment explanation
Indices: 11261416--11261496 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
11261406 AAACATATAG
* *
11261416 ACAATCGATTCAAAAGAAGCAGTATTCCAACATG
1 ACAATCGATTCAAAAGAAGCAATATTCCAACATA
* * * *
11261450 ATAATCCATTCAAAAGAAGCAATATTCTAGCATA
1 ACAATCGATTCAAAAGAAGCAATATTCCAACATA
11261484 ACAATCGATTCAA
1 ACAATCGATTCAA
11261497 TCCAAATTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.46, C:0.20, G:0.11, T:0.23
Consensus pattern (34 bp):
ACAATCGATTCAAAAGAAGCAATATTCCAACATA
Found at i:11262900 original size:34 final size:34
Alignment explanation
Indices: 11262820--11262901 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
11262810 TAAACATATA
* *
11262820 AACAATCGATTCAAAAGAAGCAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAGAAATATTCCAACAT
* * * * *
11262854 GATAATCCATTCAAAAGAAGAAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAGAAATATTCCAACAT
11262888 AACAATCGATTCAA
1 AACAATCGATTCAA
11262902 TCCAAATTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.48, C:0.18, G:0.11, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAGAAATATTCCAACAT
Found at i:11268515 original size:54 final size:56
Alignment explanation
Indices: 11268394--11268526 Score: 182
Period size: 55 Copynumber: 2.4 Consensus size: 56
11268384 ATCTGGATTG
* * * *
11268394 AATCGATTGTTATGATGGAATA-TAGCTTCTTTTGAATCGATTGTTTTTATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
*
11268449 AATCGATTGTCATGTTGGAATACT-GCTTCTTTTGAATATATT-TTTATATATTTA
1 AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
* *
11268503 AATCAATTGTCATGTTGAAATACT
1 AATCGATTGTCATGTTGGAATACT
11268527 TTTATGTAGA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
54 33 0.47
55 36 0.51
56 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.47
Consensus pattern (56 bp):
AATCGATTGTCATGTTGGAATACTAGCTTCTTTTGAATAGATTGTTTATATATTTA
Found at i:11269904 original size:34 final size:34
Alignment explanation
Indices: 11269824--11269905 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
11269814 TAAACATATA
*
11269824 AACAATCGATTCAAAAGAAACAGTATTCCAACAT
1 AACAATCGATTCAAAAGAAACAATATTCCAACAT
* * * * * *
11269858 GATAATCCATTCAAAAGAAGCAATATTCTAGCAT
1 AACAATCGATTCAAAAGAAACAATATTCCAACAT
11269892 AACAATCGATTCAA
1 AACAATCGATTCAA
11269906 TCCAAATTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.48, C:0.20, G:0.10, T:0.23
Consensus pattern (34 bp):
AACAATCGATTCAAAAGAAACAATATTCCAACAT
Found at i:11274373 original size:7 final size:7
Alignment explanation
Indices: 11274343--11274384 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
11274333 TTTGGTCATC
11274343 TTTAATT
1 TTTAATT
11274350 TTT-ATAT
1 TTTAAT-T
*
11274357 TTTATTT
1 TTTAATT
11274364 TTTAATT
1 TTTAATT
*
11274371 TTTAAAT
1 TTTAATT
11274378 TTTAATT
1 TTTAATT
11274385 CAAACCCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 2 0.07
7 26 0.90
8 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTAATT
Found at i:11275141 original size:6 final size:6
Alignment explanation
Indices: 11275123--11275158 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
11275113 TCTAAACCCC
*
11275123 CTGCCA CTTCCA CTGCCA CTGCCA CTGCCA CTGCCA
1 CTGCCA CTGCCA CTGCCA CTGCCA CTGCCA CTGCCA
11275159 GCCATGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.50, G:0.14, T:0.19
Consensus pattern (6 bp):
CTGCCA
Found at i:11286610 original size:14 final size:14
Alignment explanation
Indices: 11286591--11286617 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11286581 AAAAGCTACC
11286591 AAGACCATAATTAG
1 AAGACCATAATTAG
11286605 AAGACCATAATTA
1 AAGACCATAATTA
11286618 AAAGCTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.11, T:0.22
Consensus pattern (14 bp):
AAGACCATAATTAG
Found at i:11296017 original size:24 final size:24
Alignment explanation
Indices: 11295985--11296032 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
11295975 ATAACTATAT
11295985 ATATAGTTTATAATTTAAATTAAA
1 ATATAGTTTATAATTTAAATTAAA
11296009 ATATAGTTTATAATTTAAATTAAA
1 ATATAGTTTATAATTTAAATTAAA
11296033 TAATCCAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (24 bp):
ATATAGTTTATAATTTAAATTAAA
Found at i:11297189 original size:20 final size:21
Alignment explanation
Indices: 11297160--11297198 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
11297150 AGATTTCTCG
11297160 AAAAATGTCAACGGTCAACCC
1 AAAAATGTCAACGGTCAACCC
11297181 AAAAA-GTCAACGGTCAAC
1 AAAAATGTCAACGGTCAAC
11297199 AGTCAACTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.46, C:0.26, G:0.15, T:0.13
Consensus pattern (21 bp):
AAAAATGTCAACGGTCAACCC
Found at i:11298829 original size:16 final size:16
Alignment explanation
Indices: 11298808--11298840 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
11298798 TTGTTTTGTC
11298808 ACTTTTCAATAACATT
1 ACTTTTCAATAACATT
*
11298824 ACTTTTCAATACCATT
1 ACTTTTCAATAACATT
11298840 A
1 A
11298841 GTGACTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.42
Consensus pattern (16 bp):
ACTTTTCAATAACATT
Done.