Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 45 of 163
Found at i:11302080 original size:14 final size:15
Alignment explanation
Indices: 11302056--11302084 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11302046 GGACCAAATT
11302056 ATATAAAAAATTAAA
1 ATATAAAAAATTAAA
11302071 ATAT-AAAAATTAAA
1 ATATAAAAAATTAAA
11302085 TAATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATATAAAAAATTAAA
Found at i:11302751 original size:15 final size:15
Alignment explanation
Indices: 11302726--11302768 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
11302716 TGATTATATA
*
11302726 AAAAAATTTAATAAAT
1 AAAAAA-TTAAAAAAT
11302742 AAAAAATTAAAAAAT
1 AAAAAATTAAAAAAT
* *
11302757 TAAATATTAAAA
1 AAAAAATTAAAA
11302769 TAAGATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 18 0.75
16 6 0.25
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAAAATTAAAAAAT
Found at i:11308535 original size:10 final size:10
Alignment explanation
Indices: 11308522--11308572 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
11308512 ATTCGAAAAC
11308522 TTTTCTTTCT
1 TTTTCTTTCT
*
11308532 TTTTCTCTCT
1 TTTTCTTTCT
11308542 TTTTCTTT-T
1 TTTTCTTTCT
11308551 CTTTTCTTT-T
1 -TTTTCTTTCT
**
11308561 TTCCCTTTCT
1 TTTTCTTTCT
11308571 TT
1 TT
11308573 CTTTTCCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 7 0.20
10 28 0.80
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:11308582 original size:10 final size:9
Alignment explanation
Indices: 11308521--11308578 Score: 50
Period size: 8 Copynumber: 6.7 Consensus size: 9
11308511 TATTCGAAAA
11308521 CTTTTCTTT
1 CTTTTCTTT
*
11308530 CTTTT-TCT
1 CTTTTCTTT
*
11308538 CTCTT-TTT
1 CTTTTCTTT
11308546 CTTTTCTTTT
1 CTTTTC-TTT
*
11308556 CTTTT-TTC
1 CTTTTCTTT
*
11308564 CCTTTCTTT
1 CTTTTCTTT
11308573 CTTTTC
1 CTTTTC
11308579 CTTTTATTGC
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
8 18 0.47
9 12 0.32
10 8 0.21
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (9 bp):
CTTTTCTTT
Found at i:11313771 original size:20 final size:20
Alignment explanation
Indices: 11313738--11313778 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
11313728 AAACAATTTT
*
11313738 TAAAAATATATAATTCAAAAA
1 TAAAAAAATATAATT-AAAAA
11313759 TAAAAAAAT-TAATTAAAAA
1 TAAAAAAATATAATTAAAAA
11313778 T
1 T
11313779 TTCAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.32
20 5 0.26
21 8 0.42
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
TAAAAAAATATAATTAAAAA
Found at i:11313775 original size:34 final size:37
Alignment explanation
Indices: 11313698--11313778 Score: 98
Period size: 34 Copynumber: 2.3 Consensus size: 37
11313688 ATTATTCAAA
* *
11313698 AATTAAAATATATATAAATTCAAAAAATGTAAACAATT
1 AATTAAAA-ATATATAAATTCAAAAAATGAAAAAAATT
*
11313736 -TTTAAAAATATAT-AATTC-AAAAAT-AAAAAAATT
1 AATTAAAAATATATAAATTCAAAAAATGAAAAAAATT
11313769 AATTAAAAAT
1 AATTAAAAAT
11313779 TTCAAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
33 7 0.18
34 14 0.37
35 5 0.13
36 6 0.16
37 6 0.16
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (37 bp):
AATTAAAAATATATAAATTCAAAAAATGAAAAAAATT
Found at i:11314029 original size:24 final size:23
Alignment explanation
Indices: 11314002--11314047 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
11313992 TTTATTGAAC
*
11314002 TTTTCAAAATATTTTTGAATTTTT
1 TTTTCAAAA-ATTTTTAAATTTTT
**
11314026 TTTTGTAAAATTTTTAAATTTT
1 TTTTCAAAAATTTTTAAATTTT
11314048 AACTAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTCAAAAATTTTTAAATTTTT
Found at i:11315116 original size:26 final size:26
Alignment explanation
Indices: 11315087--11315137 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
11315077 CAAATCTTTA
11315087 ACCAAACT-TTTTAAAAGTATTTTTCC
1 ACCAAA-TATTTTAAAAGTATTTTTCC
*
11315113 ACCACATATTTTAAAAGTATTTTTC
1 ACCAAATATTTTAAAAGTATTTTTC
11315138 AAAAGCAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.35, C:0.18, G:0.04, T:0.43
Consensus pattern (26 bp):
ACCAAATATTTTAAAAGTATTTTTCC
Found at i:11317461 original size:18 final size:17
Alignment explanation
Indices: 11317434--11317470 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
11317424 CATGAAAAGG
*
11317434 GAAATTAAAAAAAAGTT
1 GAAATTAAAAAAAAATT
11317451 GAAAGTTAAAAAAAAATT
1 GAAA-TTAAAAAAAAATT
11317469 GA
1 GA
11317471 CTGACAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.22
Consensus pattern (17 bp):
GAAATTAAAAAAAAATT
Found at i:11319736 original size:15 final size:16
Alignment explanation
Indices: 11319711--11319741 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
11319701 CAAACAACGC
11319711 AAAATTAAAAATTAAA
1 AAAATTAAAAATTAAA
11319727 AAAATT-AAAATTAAA
1 AAAATTAAAAATTAAA
11319742 TAGAAGGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATTAAAAATTAAA
Found at i:11320254 original size:31 final size:32
Alignment explanation
Indices: 11320194--11320285 Score: 114
Period size: 31 Copynumber: 2.8 Consensus size: 32
11320184 GGACTCTAAA
* *
11320194 AAGTTTAAGTACTAACTTGAAAAAAAAGTGTC
1 AAGTTTAAGTACCAAATTGAAAAAAAAGTGTC
*
11320226 AAGTTTAAGTACCAAATT-AAGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTGAAAAAAAAGTGTC
* *
11320257 AAGTTTGAGTATCAAATTGGACAAAAAAA
1 AAGTTTAAGTACCAAATT-GA-AAAAAAA
11320286 TTTAAATACC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
31 28 0.55
32 16 0.31
33 1 0.02
34 6 0.12
ACGTcount: A:0.49, C:0.09, G:0.16, T:0.26
Consensus pattern (32 bp):
AAGTTTAAGTACCAAATTGAAAAAAAAGTGTC
Found at i:11320308 original size:91 final size:89
Alignment explanation
Indices: 11320140--11320308 Score: 223
Period size: 91 Copynumber: 1.9 Consensus size: 89
11320130 TAAAAAAAGA
* * *
11320140 TTAAGTACCAAATTAAAAAAAGAGTCAAGTTCAAGTACCAAATTGGACTCTAAAAAGTTTAAGTA
1 TTAAGTACCAAATTAAAAAAAGAGTCAAGTTCAAGTACCAAATTGGAC-CAAAAAAATTTAAATA
* * *
11320205 CTAACTTGAAAAAAAAGTGTCAAGT
65 CCAAATTAAAAAAAAAGTGTCAAGT
* ** *
11320230 TTAAGTACCAAATTAAGAAAAAGTGTCAAGTTTGAGTATCAAATTGGA-CAAAAAAATTTAAATA
1 TTAAGTACCAAATTAA-AAAAAGAGTCAAGTTCAAGTACCAAATTGGACCAAAAAAATTTAAATA
11320294 CCAAATTAAAAAAAA
65 CCAAATTAAAAAAAA
11320309 TATTAAATTC
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
89 25 0.37
90 16 0.24
91 27 0.40
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.25
Consensus pattern (89 bp):
TTAAGTACCAAATTAAAAAAAGAGTCAAGTTCAAGTACCAAATTGGACCAAAAAAATTTAAATAC
CAAATTAAAAAAAAAGTGTCAAGT
Found at i:11323570 original size:30 final size:30
Alignment explanation
Indices: 11323522--11323649 Score: 157
Period size: 30 Copynumber: 4.3 Consensus size: 30
11323512 ATGTAGGAGA
* * *
11323522 ATATCAAAAAACAGCCACAAAGGCTTCCAC
1 ATATCACAAAACAACCACAAAGGCTTTCAC
*
11323552 ATATCACAGAACAACCACAAAGGCTTTCAC
1 ATATCACAAAACAACCACAAAGGCTTTCAC
* * *
11323582 ATATCATAAAACAGCTACAAAGGCTTTCAC
1 ATATCACAAAACAACCACAAAGGCTTTCAC
*** *
11323612 ATATTGGAGAACAACCACAAAGGCTTTCAC
1 ATATCACAAAACAACCACAAAGGCTTTCAC
11323642 ATATCACA
1 ATATCACA
11323650 TTCTGCCACA
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.44, C:0.27, G:0.11, T:0.19
Consensus pattern (30 bp):
ATATCACAAAACAACCACAAAGGCTTTCAC
Found at i:11323596 original size:60 final size:60
Alignment explanation
Indices: 11323522--11323647 Score: 198
Period size: 60 Copynumber: 2.1 Consensus size: 60
11323512 ATGTAGGAGA
11323522 ATATCAAAAAACAGCCACAAAGGCTTCCACATATCACAGAACAACCACAAAGGCTTTCAC
1 ATATCAAAAAACAGCCACAAAGGCTTCCACATATCACAGAACAACCACAAAGGCTTTCAC
* * * ***
11323582 ATATCATAAAACAGCTACAAAGGCTTTCACATATTGGAGAACAACCACAAAGGCTTTCAC
1 ATATCAAAAAACAGCCACAAAGGCTTCCACATATCACAGAACAACCACAAAGGCTTTCAC
11323642 ATATCA
1 ATATCA
11323648 CATTCTGCCA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.44, C:0.26, G:0.11, T:0.19
Consensus pattern (60 bp):
ATATCAAAAAACAGCCACAAAGGCTTCCACATATCACAGAACAACCACAAAGGCTTTCAC
Found at i:11330207 original size:30 final size:30
Alignment explanation
Indices: 11330164--11330226 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
11330154 GGCAGTGCAC
11330164 AAGTCAAAGGCTAGAAGTCTTCTAGCTTCT
1 AAGTCAAAGGCTAGAAGTCTTCTAGCTTCT
* *
11330194 AAGTCGAATGCTAGAAGTCTTCTAGCTTCT
1 AAGTCAAAGGCTAGAAGTCTTCTAGCTTCT
11330224 AAG
1 AAG
11330227 CATAGATTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (30 bp):
AAGTCAAAGGCTAGAAGTCTTCTAGCTTCT
Found at i:11331612 original size:14 final size:14
Alignment explanation
Indices: 11331542--11331622 Score: 51
Period size: 14 Copynumber: 5.6 Consensus size: 14
11331532 CAAATACTTT
11331542 TAAAATAGTAACAA
1 TAAAATAGTAACAA
*
11331556 TAATAATAATAA-AA
1 TAA-AATAGTAACAA
11331570 T--AATAGTTATACAA
1 TAAAATAG-TA-ACAA
* *
11331584 TGTCTAAATAATAACAA
1 --T-AAAATAGTAACAA
11331601 TAAAATAGTAACAA
1 TAAAATAGTAACAA
*
11331615 TATAATAG
1 TAAAATAG
11331623 CGAAATGATA
Statistics
Matches: 52, Mismatches: 6, Indels: 18
0.68 0.08 0.24
Matches are distributed among these distances:
11 4 0.08
12 2 0.04
13 1 0.02
14 26 0.50
15 8 0.15
16 1 0.02
17 4 0.08
18 2 0.04
19 4 0.08
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (14 bp):
TAAAATAGTAACAA
Found at i:11342706 original size:14 final size:14
Alignment explanation
Indices: 11342687--11342713 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11342677 CATTCTTATT
11342687 AAATAAAAAATTAC
1 AAATAAAAAATTAC
11342701 AAATAAAAAATTA
1 AAATAAAAAATTA
11342714 AATTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
AAATAAAAAATTAC
Found at i:11348708 original size:90 final size:90
Alignment explanation
Indices: 11348550--11348824 Score: 372
Period size: 90 Copynumber: 3.1 Consensus size: 90
11348540 GGCAGTTTAA
* * * *
11348550 TAACCTGCAACACTCGTGGTTCATCCACCCATTTTCTGGTAGCTTTTATCTGCAAATACGTTGTG
1 TAACCTGCAACACTAGTGGTTCATCCACCCATTTTCTGGCAACTCTTATCTGCAAATACGTTGTG
*
11348615 CATTCACAACCATCTGACAGCGTAT
66 CATTCACAACCATCTGACAACGTAT
* * *
11348640 TAACTTGCAACACTAGTGGTTCATCCACCCATTTTCTGACAACTCTTATATGCAAATACGTTGTG
1 TAACCTGCAACACTAGTGGTTCATCCACCCATTTTCTGGCAACTCTTATCTGCAAATACGTTGTG
* *
11348705 CATTCACAACCATTTGTCAACGTAT
66 CATTCACAACCATCTGACAACGTAT
* * ** * * *
11348730 TAACCTGCAACACTGGTAGTTCATCCACCCACATTCTGGC-ACTCTCATCTGCAAATATGTTATG
1 TAACCTGCAACACTAGTGGTTCATCCACCCATTTTCTGGCAACTCTTATCTGCAAATACGTTGTG
* *
11348794 TATTCACAACCATCTGACAACATAT
66 CATTCACAACCATCTGACAACGTAT
11348819 TAACCT
1 TAACCT
11348825 ACAATTTTTG
Statistics
Matches: 161, Mismatches: 24, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
89 47 0.29
90 114 0.71
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.32
Consensus pattern (90 bp):
TAACCTGCAACACTAGTGGTTCATCCACCCATTTTCTGGCAACTCTTATCTGCAAATACGTTGTG
CATTCACAACCATCTGACAACGTAT
Found at i:11350753 original size:17 final size:16
Alignment explanation
Indices: 11350731--11350768 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
11350721 TAGATCTATT
*
11350731 ATTTTATAAAAAAGGGA
1 ATTTT-TAAAAAAGAGA
11350748 A-TTTTAAAAAAGAGA
1 ATTTTTAAAAAAGAGA
11350763 ATTTTT
1 ATTTTT
11350769 TTTTAACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 11 0.58
16 7 0.37
17 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
ATTTTTAAAAAAGAGA
Found at i:11350757 original size:15 final size:15
Alignment explanation
Indices: 11350737--11350767 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
11350727 TATTATTTTA
*
11350737 TAAAAAAGGGAATTT
1 TAAAAAAGAGAATTT
11350752 TAAAAAAGAGAATTT
1 TAAAAAAGAGAATTT
11350767 T
1 T
11350768 TTTTTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.16, T:0.29
Consensus pattern (15 bp):
TAAAAAAGAGAATTT
Found at i:11355225 original size:43 final size:43
Alignment explanation
Indices: 11355171--11355252 Score: 105
Period size: 44 Copynumber: 1.9 Consensus size: 43
11355161 TTATGTATTA
* *
11355171 TTTAG-ATTTTTTTAAAT-TTATATATATTTAAAAATATATAAAT
1 TTTAGAATTTTTATAAATATT-TATAAATTT-AAAATATATAAAT
*
11355214 TTTAGAATTTTTATAAATATTTTTAAATTTAAAATATAT
1 TTTAGAATTTTTATAAATATTTATAAATTTAAAATATAT
11355253 TTTGAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
43 14 0.41
44 18 0.53
45 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (43 bp):
TTTAGAATTTTTATAAATATTTATAAATTTAAAATATATAAAT
Found at i:11355244 original size:18 final size:18
Alignment explanation
Indices: 11355179--11355260 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 18
11355169 TATTTAGATT
*
11355179 TTTTTAAATTTATATATA
1 TTTTTAAATTTATAAATA
** *
11355197 TTTAAAAATATATAAAT-
1 TTTTTAAATTTATAAATA
** *
11355214 TTTAGAATTTTTATAAATA
1 TTTTTAA-ATTTATAAATA
11355233 TTTTTAAATTTA-AAATA
1 TTTTTAAATTTATAAATA
*
11355250 TATTTTGAATT
1 T-TTTTAAATT
11355261 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
17 12 0.24
18 33 0.66
19 5 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTTTTAAATTTATAAATA
Found at i:11356538 original size:21 final size:21
Alignment explanation
Indices: 11356484--11356542 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
11356474 TGAAAAATAA
* *
11356484 TAAAATAAACAAATAATACAT
1 TAAATTAAAAAAATAATACAT
*
11356505 TAAATTAAAAAAATAATTC-T
1 TAAATTAAAAAAATAATACAT
*
11356525 TAATTTAAAGAAAATAAT
1 TAAATTAAA-AAAATAAT
11356543 GAATTATCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.27
21 24 0.73
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAATTAAAAAAATAATACAT
Found at i:11357047 original size:33 final size:33
Alignment explanation
Indices: 11357010--11357076 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
11357000 AAGGCACACC
11357010 ATTTTCAACCCAATAAATATACCTAATAATAAA
1 ATTTTCAACCCAATAAATATACCTAATAATAAA
11357043 ATTTTCAACCCAATAAATATACCTAATAATAAA
1 ATTTTCAACCCAATAAATATACCTAATAATAAA
11357076 A
1 A
11357077 GAGCTTTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (33 bp):
ATTTTCAACCCAATAAATATACCTAATAATAAA
Found at i:11360794 original size:24 final size:23
Alignment explanation
Indices: 11360766--11360821 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
11360756 TAGACTAATA
11360766 AGAGTTTATCTCAAACAAATAAAC
1 AGAGTTTAT-TCAAACAAATAAAC
* *
11360790 AGAGTTTAATTGAAACAAATAAAT
1 AGAGTTT-ATTCAAACAAATAAAC
11360814 AGAGTTTA
1 AGAGTTTA
11360822 ACAGAAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 1 0.03
24 26 0.90
25 2 0.07
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (23 bp):
AGAGTTTATTCAAACAAATAAAC
Found at i:11360828 original size:24 final size:24
Alignment explanation
Indices: 11360778--11360828 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
11360768 AGTTTATCTC
**
11360778 AAACAAATAAACAGAGTTTAATTG
1 AAACAAATAAACAGAGTTTAACAG
*
11360802 AAACAAATAAATAGAGTTTAACAG
1 AAACAAATAAACAGAGTTTAACAG
11360826 AAA
1 AAA
11360829 GATTATTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.22
Consensus pattern (24 bp):
AAACAAATAAACAGAGTTTAACAG
Found at i:11361227 original size:26 final size:26
Alignment explanation
Indices: 11361192--11361244 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
11361182 TAAATTTATT
*
11361192 TAATTTTTG-TAAATTAAAATTTCAGA
1 TAATTATTGTTAAATTAAAA-TTCAGA
*
11361218 TAATTATTGTTAAATTAATATTCAGA
1 TAATTATTGTTAAATTAAAATTCAGA
11361244 T
1 T
11361245 TTATATTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.42, C:0.04, G:0.08, T:0.47
Consensus pattern (26 bp):
TAATTATTGTTAAATTAAAATTCAGA
Found at i:11363484 original size:25 final size:25
Alignment explanation
Indices: 11363454--11363504 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
11363444 TGGAAGTACA
11363454 GGTGCAGATGCATTGGTACCTCTAT
1 GGTGCAGATGCATTGGTACCTCTAT
11363479 GGTGCAGATGCATTGGTACCTCTAT
1 GGTGCAGATGCATTGGTACCTCTAT
11363504 G
1 G
11363505 CTATCTACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (25 bp):
GGTGCAGATGCATTGGTACCTCTAT
Found at i:11366962 original size:41 final size:41
Alignment explanation
Indices: 11366917--11366998 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
11366907 CTTTATACGA
* *
11366917 TCTTATACT-TCACAGAATCGTAAGTCTTCCTTTTTAAACAT
1 TCTTATACTCT-ACAGAATCATAAGTCTTCCTTTTCAAACAT
* ** *
11366958 TCTTATGCTCTACCTAGTCATAAGTCTTCCTTTTCAAACAT
1 TCTTATACTCTACAGAATCATAAGTCTTCCTTTTCAAACAT
11366999 AATCTCACGC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.41
Consensus pattern (41 bp):
TCTTATACTCTACAGAATCATAAGTCTTCCTTTTCAAACAT
Found at i:11367051 original size:84 final size:85
Alignment explanation
Indices: 11366939--11367125 Score: 193
Period size: 84 Copynumber: 2.2 Consensus size: 85
11366929 CAGAATCGTA
* * * * *
11366939 AGTCTTCCTTTTTAA-ACATTCTTATGCTC-TACCTAGTCATAAGTCTTCCTTTTCAAACATAA-
1 AGTCTTCC-TTTTAACATATTCTCATGCTCATACCGAGTCACAAGTCTTCCATTT-AAACA-AAT
** *
11367001 TCTCACGCTCATTCCTAGACATG
63 TCTCACGCTCAACCCAAGACATG
* * *
11367024 AGTCTTCC-TTTAACATATTCTCATGCTCATTCCGAGTCACGAGTCTTCCATTTATACAAATTCT
1 AGTCTTCCTTTTAACATATTCTCATGCTCATACCGAGTCACAAGTCTTCCATTTAAACAAATTCT
*
11367088 CATGCTCAACCCAAGACATG
66 CACGCTCAACCCAAGACATG
*
11367108 AGTCTTCCATTTATACAT
1 AGTCTTCCTTTTA-ACAT
11367126 CAAGTGTTTC
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
83 7 0.08
84 43 0.51
85 31 0.36
86 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.37
Consensus pattern (85 bp):
AGTCTTCCTTTTAACATATTCTCATGCTCATACCGAGTCACAAGTCTTCCATTTAAACAAATTCT
CACGCTCAACCCAAGACATG
Found at i:11367052 original size:41 final size:42
Alignment explanation
Indices: 11366939--11367125 Score: 164
Period size: 43 Copynumber: 4.4 Consensus size: 42
11366929 CAGAATCGTA
* * * * *
11366939 AGTCTTCCTTTTTAA-ACATTCTTATGCTC-TACCTAGTCATA
1 AGTCTTCC-TTTTAACATATTCTCATGCTCATTCCTAGACATG
* *
11366980 AGTCTTCCTTTTCAAACATAATCTCACGCTCATTCCTAGACATG
1 AGTCTTCCTTTT--AACATATTCTCATGCTCATTCCTAGACATG
* * *
11367024 AGTCTTCC-TTTAACATATTCTCATGCTCATTCCGAGTCACG
1 AGTCTTCCTTTTAACATATTCTCATGCTCATTCCTAGACATG
* * ** *
11367065 AGTCTTCCATTTATACAAATTCTCATGCTCAACCCAAGACATG
1 AGTCTTCCTTTTA-ACATATTCTCATGCTCATTCCTAGACATG
*
11367108 AGTCTTCCATTTATACAT
1 AGTCTTCCTTTTA-ACAT
11367126 CAAGTGTTTC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
40 4 0.03
41 41 0.34
42 6 0.05
43 53 0.44
44 17 0.14
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.37
Consensus pattern (42 bp):
AGTCTTCCTTTTAACATATTCTCATGCTCATTCCTAGACATG
Found at i:11375659 original size:23 final size:23
Alignment explanation
Indices: 11375613--11375703 Score: 67
Period size: 23 Copynumber: 3.8 Consensus size: 23
11375603 TTAATTTTTC
* *
11375613 ATAAATAATAGAATTTTAAATTA
1 ATAAATAATAAAATTATAAATTA
**
11375636 ATAAATAATAAAATTATACTTTA
1 ATAAATAATAAAATTATAAATTA
*
11375659 ACCTTTTAAAAAAT-AAATTATAAATTA
1 A-----TAAATAATAAAATTATAAATTA
* *
11375686 ATATATGATAAAATTATA
1 ATAAATAATAAAATTATA
11375704 TTTTAATTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
22 5 0.10
23 28 0.54
27 12 0.23
28 7 0.13
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.38
Consensus pattern (23 bp):
ATAAATAATAAAATTATAAATTA
Found at i:11375720 original size:50 final size:51
Alignment explanation
Indices: 11375602--11375720 Score: 152
Period size: 50 Copynumber: 2.3 Consensus size: 51
11375592 AAAATTTCAA
*
11375602 TTTAATTTTTCATAAATAATAGAATTTTAAATTAATAAATAATAAAATTATAC
1 TTTAATTTTTCA-AAA-AATAGAATTATAAATTAATAAATAATAAAATTATAC
* * * *
11375655 TTTAACCTTTT-AAAAAATA-AATTATAAATTAATATATGATAAAATTATAT
1 TTTAA-TTTTTCAAAAAATAGAATTATAAATTAATAAATAATAAAATTATAC
11375705 TTTAATTTTTCAAAAA
1 TTTAATTTTTCAAAAA
11375721 TTTATAACTC
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
49 4 0.07
50 37 0.64
51 4 0.07
52 3 0.05
53 6 0.10
54 4 0.07
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (51 bp):
TTTAATTTTTCAAAAAATAGAATTATAAATTAATAAATAATAAAATTATAC
Found at i:11376388 original size:2 final size:2
Alignment explanation
Indices: 11376381--11376425 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
11376371 CTGTACCCCA
11376381 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
11376423 TC T
1 TC T
11376426 TACTTTATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:11376677 original size:23 final size:22
Alignment explanation
Indices: 11376650--11376699 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
11376640 ACAAATAAAT
11376650 ATTAATAGTTTAATTTAATCATA
1 ATTAATA-TTTAATTTAATCATA
** *
11376673 ATTAAATATTTGTTTTAATTATA
1 ATT-AATATTTAATTTAATCATA
11376696 ATTA
1 ATTA
11376700 TTTTTTTAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 18 0.78
24 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (22 bp):
ATTAATATTTAATTTAATCATA
Found at i:11376693 original size:17 final size:18
Alignment explanation
Indices: 11376671--11376707 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
11376661 AATTTAATCA
11376671 TAATTA-AA-TATTTGTTT
1 TAATTATAATTATTT-TTT
11376688 TAATTATAATTATTTTTT
1 TAATTATAATTATTTTTT
11376706 TA
1 TA
11376708 GAAAATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 7 0.39
19 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TAATTATAATTATTTTTT
Found at i:11383419 original size:17 final size:16
Alignment explanation
Indices: 11383410--11383481 Score: 85
Period size: 17 Copynumber: 4.5 Consensus size: 16
11383400 TTAAATTGAT
*
11383410 TTTAAATTTATTTAAA
1 TTTAAATTTACTTAAA
11383426 TTTAAATTTATCTTAAA
1 TTTAAATTTA-CTTAAA
* *
11383443 TTTAAATTTA-AT-CA
1 TTTAAATTTACTTAAA
11383457 TTTAAATTTACCTTAAA
1 TTTAAATTTA-CTTAAA
11383474 TTTAAATT
1 TTTAAATT
11383482 ATAAAACAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
14 11 0.23
15 1 0.02
16 11 0.23
17 24 0.51
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTAAATTTACTTAAA
Found at i:11383428 original size:6 final size:6
Alignment explanation
Indices: 11383410--11383486 Score: 65
Period size: 6 Copynumber: 13.0 Consensus size: 6
11383400 TTAAATTGAT
11383410 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTAATCA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTTAA--A
* *
11383457 TTTAAA TTT-AC CTTAAA TTTAAA TTATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA
11383487 ACAAATTTAA
Statistics
Matches: 58, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
4 6 0.10
5 5 0.09
6 35 0.60
7 6 0.10
8 6 0.10
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:11385518 original size:29 final size:30
Alignment explanation
Indices: 11385476--11385779 Score: 266
Period size: 29 Copynumber: 10.5 Consensus size: 30
11385466 AAACAGTCCA
11385476 AAAATTACCA-TTTTACCCCCGAACTTTCC
1 AAAATTACCATTTTTACCCCCGAACTTTCC
*
11385505 AAAATT-CCATTTTTAACCCCGAAAC-TTCC
1 AAAATTACCATTTTTACCCCCG-AACTTTCC
*
11385534 AAAAATTACCA-TGTTACCCCCGAACTTTCC
1 -AAAATTACCATTTTTACCCCCGAACTTTCC
*
11385564 AAAATT-CCATTTTTAGCCCCG-A-TTTCACC
1 AAAATTACCATTTTTACCCCCGAACTTT--CC
* *
11385593 AAAATTACCA-TTTTACCCTCGAACTCTCC
1 AAAATTACCATTTTTACCCCCGAACTTTCC
**
11385622 AAAATT-CCATTTTTAATCCCG-A-TTTCACC
1 AAAATTACCATTTTTACCCCCGAACTTT--CC
*
11385651 AAAATTACCA-TTTTACCCCTGAACTTTCC
1 AAAATTACCATTTTTACCCCCGAACTTTCC
* *
11385680 AAGATT-CCATTTTTAACCCC-AA-TTTACC
1 AAAATTACCATTTTTACCCCCGAACTTT-CC
** * *
11385708 AAAATTACCA-TTTTACCCCTAAATTTTCT
1 AAAATTACCATTTTTACCCCCGAACTTTCC
* *
11385737 AAAATT-CCATTTTTAACCCCG-ATTTTACC
1 AAAATTACCATTTTTACCCCCGAACTTT-CC
11385766 AAAATTACCATTTT
1 AAAATTACCATTTT
11385780 GCCCCCGGGT
Statistics
Matches: 224, Mismatches: 26, Indels: 49
0.75 0.09 0.16
Matches are distributed among these distances:
27 8 0.04
28 39 0.17
29 129 0.58
30 40 0.18
31 8 0.04
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.35
Consensus pattern (30 bp):
AAAATTACCATTTTTACCCCCGAACTTTCC
Found at i:11385814 original size:58 final size:58
Alignment explanation
Indices: 11385476--11385786 Score: 446
Period size: 58 Copynumber: 5.4 Consensus size: 58
11385466 AAACAGTCCA
* *
11385476 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGAAACTTC-CA
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCG--ATTTCACC
* *
11385535 AAAATTACCATGTTACCCCCGAACTTTCCAAAATTCCATTTTTAGCCCCGATTTCACC
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * *
11385593 AAAATTACCATTTTACCCTCGAACTCTCCAAAATTCCATTTTTAATCCCGATTTCACC
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
* * *
11385651 AAAATTACCATTTTACCCCTGAACTTTCCAAGATTCCATTTTTAACCCCAATTT-ACC
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
** * * *
11385708 AAAATTACCATTTTACCCCTAAATTTTCTAAAATTCCATTTTTAACCCCGATTTTACC
1 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
*
11385766 AAAATTACCATTTTGCCCCCG
1 AAAATTACCATTTTACCCCCG
11385787 GGTATCCAAA
Statistics
Matches: 227, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
57 56 0.25
58 123 0.54
59 48 0.21
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.34
Consensus pattern (58 bp):
AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACC
Found at i:11385814 original size:115 final size:116
Alignment explanation
Indices: 11385476--11385786 Score: 439
Period size: 115 Copynumber: 2.7 Consensus size: 116
11385466 AAACAGTCCA
* **
11385476 AAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCGAAACTT-CCAAAAAT
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCG-ATTTTACC-AAAAT
* * *
11385540 TACCATGTTACCCCCGAACTTTCCAAAATTCCATTTTTAGCCCCGATTTCACC
64 TACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACC
* * *
11385593 AAAATTACCATTTTA-CCCTCGAACTCTCCAAAATTCCATTTTTAATCCCGATTTCACCAAAATT
1 AAAATTACCATTTTACCCCT-GAACTTTCCAAAATTCCATTTTTAACCCCGATTTTACCAAAATT
* *
11385657 ACCATTTTACCCCTGAACTTTCCAAGATTCCATTTTTAACCCCAATTT-ACC
65 ACCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACC
* * *
11385708 AAAATTACCATTTTACCCCTAAATTTTCTAAAATTCCATTTTTAACCCCGATTTTACCAAAATTA
1 AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTTACCAAAATTA
*
11385773 CCATTTTGCCCCCG
66 CCATTTTACCCCCG
11385787 GGTATCCAAA
Statistics
Matches: 172, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
115 69 0.40
116 58 0.34
117 45 0.26
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.34
Consensus pattern (116 bp):
AAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCCGATTTTACCAAAATTA
CCATTTTACCCCCGAACTTTCCAAAATTCCATTTTTAACCCCAATTTCACC
Found at i:11393039 original size:14 final size:13
Alignment explanation
Indices: 11393020--11393071 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 13
11393010 GCCAGATGTG
11393020 AAAGAAATGAAAGA
1 AAAGAAA-GAAAGA
11393034 AAAG-AAGAAAGA
1 AAAGAAAGAAAGA
11393046 AATAGAAAGAAAGA
1 AA-AGAAAGAAAGA
11393060 AAGAGACAAGAA
1 AA-AGA-AAGAA
11393072 GAGCATGACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
12 8 0.24
13 4 0.12
14 17 0.50
15 5 0.15
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (13 bp):
AAAGAAAGAAAGA
Found at i:11393059 original size:18 final size:17
Alignment explanation
Indices: 11393019--11393063 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
11393009 AGCCAGATGT
11393019 GAAAGAAATGAAAGAAAA
1 GAAAGAAA-GAAAGAAAA
*
11393037 G-AAGAAAGAAATAGAAA
1 GAAAGAAAGAAAGA-AAA
11393054 GAAAGAAAGA
1 GAAAGAAAGA
11393064 GACAAGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 10 0.42
18 9 0.38
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.04
Consensus pattern (17 bp):
GAAAGAAAGAAAGAAAA
Found at i:11397989 original size:38 final size:38
Alignment explanation
Indices: 11397947--11398452 Score: 238
Period size: 38 Copynumber: 13.4 Consensus size: 38
11397937 TCTTTATCTC
11397947 TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
* * *
11397985 TGAAATTGAAGTAGAGTGGATA-ACACGTCTTT--AT-CTC-
1 TGAAATTGAAGTA-AGAGCA-AGA-TCGT-TTTCCATCCTCT
*
11398022 TGAAATTGAAGTAAGAGCAACG-TC-ATTTCCTATCCTCT
1 TGAAATTGAAGTAAGAGCAA-GATCGTTTTCC-ATCCTCT
**
11398060 TGAAATTGAAGT-AGAG-TGGATAACAAGTCTTT--AT-CTC-
1 TGAAATTGAAGTAAGAGCAAGAT--C--GT-TTTCCATCCTCT
*
11398097 TGAAATTGAAGTAAGAGCAAGATCGTTTCCCATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
**
11398135 TGAAATTGAAGTAA-AGCTGGATAACACGTCTTT--AT-CTC-
1 TGAAATTGAAGTAAGAGCAAGAT----CGT-TTTCCATCCTCT
* *
11398173 TGAAATTGAAGTAAGAGCAACG-TC-ATTTCCTATCCTTT
1 TGAAATTGAAGTAAGAGCAA-GATCGTTTTCC-ATCCTCT
* *
11398211 TGAAATTGAAGTAA-AGCTGGATATCAAGTCTTT--AT-CTC-
1 TGAAATTGAAGTAAGAGC--AAGATC--GT-TTTCCATCCTCT
*
11398249 TGAAATTGAAGTAAGAGCAAGATC-TTTTCCTATCCGCT
1 TGAAATTGAAGTAAGAGCAAGATCGTTTTCC-ATCCTCT
***
11398287 TGAAATTGAAGT-AGAGTTGGATAACAAGTCTTT--AT-CTC-
1 TGAAATTGAAGTAAGAGCAAGAT--C--GT-TTTCCATCCTCT
*
11398325 TGAAATTGAAGTAAGAGCAAGATCGTTTCCCATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
***
11398363 TGAAATTGAAGT-AGAGTTGGATAACAAGTCTTT--AT-CTC-
1 TGAAATTGAAGTAAGAGCAAGAT--C--GT-TTTCCATCCTCT
*
11398401 TGAAATTGAAGTAAGAGCAAGATCGTTTCCCATCCTCT
1 TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
* *
11398439 CGAAATTAAAGTAA
1 TGAAATTGAAGTAA
11398453 AGTTGGATAG
Statistics
Matches: 353, Mismatches: 45, Indels: 140
0.66 0.08 0.26
Matches are distributed among these distances:
33 9 0.03
34 7 0.02
35 10 0.03
36 17 0.05
37 75 0.21
38 152 0.43
39 48 0.14
40 13 0.04
41 8 0.02
42 8 0.02
43 6 0.02
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (38 bp):
TGAAATTGAAGTAAGAGCAAGATCGTTTTCCATCCTCT
Found at i:11398191 original size:76 final size:76
Alignment explanation
Indices: 11397887--11398477 Score: 913
Period size: 76 Copynumber: 7.8 Consensus size: 76
11397877 ATCAGACCGC
* * **
11397887 AGCAAGATC-ATTCCTATCCTCTTGAAATTGAAGTAGAGTTGGATAACGCGTCTTTATCTCTGAA
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
11397951 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
11397962 AGCAAGATCGTTTTCCATCCTCTTGAAATTGAAGTAGAG-TGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
11398026 ATTGAAGTAAG
66 ATTGAAGTAAG
* *
11398037 AGCAACG-TCATTTCCTATCCTCTTGAAATTGAAGTAGAG-TGGATAACAAGTCTTTATCTCTGA
1 AGCAA-GATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGA
11398100 AATTGAAGTAAG
65 AATTGAAGTAAG
* * *
11398112 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAAAGCTGGATAACACGTCTTTATCTCTGAA
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
11398177 ATTGAAGTAAG
66 ATTGAAGTAAG
* * * * * *
11398188 AGCAACG-TCATTTCCTATCCTTTTGAAATTGAAGTAAAGCTGGATATCAAGTCTTTATCTCTGA
1 AGCAA-GATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGA
11398252 AATTGAAGTAAG
65 AATTGAAGTAAG
* * *
11398264 AGCAAGATCTTTTCCTATCCGCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
11398329 ATTGAAGTAAG
66 ATTGAAGTAAG
11398340 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
11398405 ATTGAAGTAAG
66 ATTGAAGTAAG
* * * *
11398416 AGCAAGATCGTTTCCCATCCTCTCGAAATTAAAGTAAAGTTGGATAGCAAGTCTTTATCTCT
1 AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCT
11398478 CTGAAGAGCA
Statistics
Matches: 480, Mismatches: 30, Indels: 11
0.92 0.06 0.02
Matches are distributed among these distances:
74 1 0.00
75 148 0.31
76 330 0.69
77 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (76 bp):
AGCAAGATCGTTTCCCATCCTCTTGAAATTGAAGTAGAGTTGGATAACAAGTCTTTATCTCTGAA
ATTGAAGTAAG
Found at i:11398777 original size:17 final size:17
Alignment explanation
Indices: 11398768--11398847 Score: 81
Period size: 17 Copynumber: 4.6 Consensus size: 17
11398758 TTAAATTGAT
11398768 TTTAAATTTA-TTTAAA
1 TTTAAATTTATTTTAAA
*
11398784 TTTAAATTTATCTTAAA
1 TTTAAATTTATTTTAAA
11398801 TTTAAATTTCATCATTTAAA
1 TTTAAATTT-AT--TTTAAA
** * *
11398821 TTTACCTTAAATTTAAA
1 TTTAAATTTATTTTAAA
11398838 TTTAAATTTA
1 TTTAAATTTA
11398848 AATTATAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
16 10 0.20
17 27 0.53
18 2 0.04
19 1 0.02
20 11 0.22
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:11398786 original size:6 final size:6
Alignment explanation
Indices: 11398768--11398856 Score: 80
Period size: 6 Copynumber: 15.0 Consensus size: 6
11398758 TTAAATTGAT
*
11398768 TTTAAA TTT--A TTTAAA TTTAAA TTT--A TCTTAAA TTTAAA TTTCATCA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T-TTAAA TTTAAA TTT-A-AA
* *
11398815 TTTAAA TTT-AC CTTAAA TTTAAA TTTAAA TTTAAA TTATAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TT-TAAA
11398857 ACAAATTTAA
Statistics
Matches: 68, Mismatches: 6, Indels: 17
0.75 0.07 0.19
Matches are distributed among these distances:
4 6 0.09
5 5 0.07
6 45 0.66
7 8 0.12
8 4 0.06
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.51
Consensus pattern (6 bp):
TTTAAA
Found at i:11400973 original size:58 final size:57
Alignment explanation
Indices: 11400842--11401093 Score: 364
Period size: 58 Copynumber: 4.4 Consensus size: 57
11400832 CCTAAACAGT
* *
11400842 CCAAAATTACCATGTTACCCCCGAACTTTC-AAAATTCCATTTT-CCCCCGATTTCA
1 CCAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTAACCCCGATTTCA
* * *
11400897 CCAAAAATTACCATTTTACCCCCGAACTCTCTAGAATTCCATTTTTAATCCCGATTTCA
1 CC-AAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCA-TTTTAACCCCGATTTCA
* * *
11400956 CCAAAATTACCATTTTACCCTCGAACTTTCCAAGATTCCATTTTAACCCCGATTTCA
1 CCAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTAACCCCGATTTCA
* *
11401013 CCAAAATTACCATTTTACCCCCAAATTTTCTAAAATTCCATTTTCAACCCCGATTTCA
1 CCAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTT-AACCCCGATTTCA
*
11401071 CCAAAATTACCATTTTGCCCCCG
1 CCAAAATTACCATTTTACCCCCG
11401094 GGTATCCAAA
Statistics
Matches: 174, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
55 2 0.01
56 26 0.15
57 63 0.36
58 71 0.41
59 12 0.07
ACGTcount: A:0.30, C:0.33, G:0.05, T:0.33
Consensus pattern (57 bp):
CCAAAATTACCATTTTACCCCCGAACTTTCTAAAATTCCATTTTAACCCCGATTTCA
Found at i:11401050 original size:115 final size:114
Alignment explanation
Indices: 11400842--11401093 Score: 380
Period size: 115 Copynumber: 2.2 Consensus size: 114
11400832 CCTAAACAGT
* *
11400842 CCAAAATTACCATGTTACCCCCGAACTTTCAAAATTCCATTTTCCCCCGATTTCACCAAAAATTA
1 CCAAAATTACCATTTTACCCCCGAACTTTCAAAATTCCATTTTACCCCGATTTCACCAAAAATTA
* * * *
11400907 CCATTTTACCCCCGAACTCTCTAGAATTCCATTTTTAATCCCGATTTCA
66 CCATTTTACCCCCAAACTCTCTAAAATTCCATTTTCAACCCCGATTTCA
* *
11400956 CCAAAATTACCATTTTACCCTCGAACTTTCCAAGATTCCATTTTAACCCCGATTTCACC-AAAAT
1 CCAAAATTACCATTTTACCCCCGAACTTT-CAAAATTCCATTTT-ACCCCGATTTCACCAAAAAT
* *
11401020 TACCATTTTACCCCCAAATTTTCTAAAATTCCATTTTCAACCCCGATTTCA
64 TACCATTTTACCCCCAAACTCTCTAAAATTCCATTTTCAACCCCGATTTCA
*
11401071 CCAAAATTACCATTTTGCCCCCG
1 CCAAAATTACCATTTTACCCCCG
11401094 GGTATCCAAA
Statistics
Matches: 124, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
114 27 0.22
115 84 0.68
116 13 0.10
ACGTcount: A:0.30, C:0.33, G:0.05, T:0.33
Consensus pattern (114 bp):
CCAAAATTACCATTTTACCCCCGAACTTTCAAAATTCCATTTTACCCCGATTTCACCAAAAATTA
CCATTTTACCCCCAAACTCTCTAAAATTCCATTTTCAACCCCGATTTCA
Found at i:11403128 original size:23 final size:25
Alignment explanation
Indices: 11403083--11403130 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
11403073 CTTAGGTGCC
*
11403083 AAATCGAGAAAAAAATAAGTAATGT
1 AAATCAAGAAAAAAATAAGTAATGT
11403108 AAATCAAGAAAAAAA-AA-TAATGT
1 AAATCAAGAAAAAAATAAGTAATGT
11403131 TCAAGTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 2 0.09
25 14 0.64
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.19
Consensus pattern (25 bp):
AAATCAAGAAAAAAATAAGTAATGT
Found at i:11404569 original size:7 final size:7
Alignment explanation
Indices: 11404559--11404583 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11404549 TTTTTTATCT
11404559 TTTGCTC
1 TTTGCTC
11404566 TTTGCTC
1 TTTGCTC
11404573 TTTGCTC
1 TTTGCTC
11404580 TTTG
1 TTTG
11404584 TATTATCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.16, T:0.60
Consensus pattern (7 bp):
TTTGCTC
Found at i:11406684 original size:22 final size:23
Alignment explanation
Indices: 11406648--11406693 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
11406638 TTTATAATAC
11406648 TTTATAATATTTTTA-CTATTTT
1 TTTATAATATTTTTAGCTATTTT
*
11406670 TTTAT-ATATATTTTAGTTATTTT
1 TTTATAATAT-TTTTAGCTATTTT
11406693 T
1 T
11406694 ATAAGATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 10 0.48
23 7 0.33
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTATAATATTTTTAGCTATTTT
Found at i:11408812 original size:19 final size:19
Alignment explanation
Indices: 11408790--11408834 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11408780 TTATATTAGG
11408790 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
11408809 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
11408828 ATTTAAT
1 ATTTAAT
11408835 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:11409670 original size:21 final size:21
Alignment explanation
Indices: 11409630--11409689 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
11409620 TTCGACTTCC
11409630 CTATTTTCTATT-TCTTTTAATT
1 CTATTTTCT-TTAT-TTTTAATT
11409652 CTATTTTCTTTATTTTTAATT
1 CTATTTTCTTTATTTTTAATT
*
11409673 CT-GTTTCTTTTATTTTT
1 CTATTTTC-TTTATTTTT
11409690 CCTTAGATCG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 4 0.11
21 21 0.60
22 10 0.29
ACGTcount: A:0.15, C:0.12, G:0.02, T:0.72
Consensus pattern (21 bp):
CTATTTTCTTTATTTTTAATT
Found at i:11411239 original size:21 final size:21
Alignment explanation
Indices: 11411215--11411264 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
11411205 GAATTTCAGC
*
11411215 AGCAATCTATAGATTTTCAAA
1 AGCAAACTATAGATTTTCAAA
* *
11411236 AGCAAACTGTGGATTTTCAAA
1 AGCAAACTATAGATTTTCAAA
*
11411257 AGAAAACT
1 AGCAAACT
11411265 GAGGCATCTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (21 bp):
AGCAAACTATAGATTTTCAAA
Found at i:11411265 original size:21 final size:21
Alignment explanation
Indices: 11411226--11411265 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
11411216 GCAATCTATA
*
11411226 GATTTTCAAAAGCAAACTGTG
1 GATTTTCAAAAGAAAACTGTG
11411247 GATTTTCAAAAGAAAACTG
1 GATTTTCAAAAGAAAACTG
11411266 AGGCATCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (21 bp):
GATTTTCAAAAGAAAACTGTG
Found at i:11415216 original size:8 final size:8
Alignment explanation
Indices: 11415203--11415255 Score: 54
Period size: 8 Copynumber: 6.5 Consensus size: 8
11415193 AACCCAATTA
11415203 TTTTTATT
1 TTTTTATT
11415211 TTTTTATT
1 TTTTTATT
*
11415219 TTTCTATCT
1 TTTTTAT-T
11415228 TATTTTATT
1 T-TTTTATT
*
11415237 TATTTA-T
1 TTTTTATT
*
11415244 TATTTATT
1 TTTTTATT
11415252 TTTT
1 TTTT
11415256 CTAGGAAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
7 7 0.18
8 22 0.58
9 4 0.11
10 5 0.13
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:11415232 original size:21 final size:19
Alignment explanation
Indices: 11415200--11415255 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 19
11415190 GGCAACCCAA
11415200 TTATT-TTTATTTTTTTAT
1 TTATTATTTATTTTTTTAT
*
11415218 TTTTCTATCTTATTTTATTTAT
1 TTAT-TAT-TTATTTT-TTTAT
11415240 TTATTATTTATTTTTT
1 TTATTATTTATTTTTT
11415256 CTAGGAAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
18 3 0.09
19 3 0.09
20 8 0.25
21 10 0.31
22 8 0.25
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (19 bp):
TTATTATTTATTTTTTTAT
Found at i:11416217 original size:104 final size:104
Alignment explanation
Indices: 11416030--11416219 Score: 247
Period size: 104 Copynumber: 1.8 Consensus size: 104
11416020 TGTTAGACTA
* * * *
11416030 AGTAACCGGGATGGAGTGCTTGGTTGTCATTTCACTTCGTGTCAAAAGGGCTAACACATTCTACA
1 AGTAACCGGGATAGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAACACATTCTACA
** *
11416095 AAAAAACGAGAAGAAAAAAATTGAGAGCATGTTGGGCTG
66 AAAAAAAAAAAAGAAAAAAATTGAGAGCATGTTGGGCTG
* * ***
11416134 AGTAACCGGGATAGAGTGCTTGGGTGTCATTTCATTTCGCGTCAAAAGGTCCAATGTATTCTTA-
1 AGTAACCGGGATAGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAACACATTC-TAC
11416198 AAGAAAAAAAAAAAGAAAAAAA
65 AA-AAAAAAAAAAAGAAAAAAA
11416220 CTGACAAAAT
Statistics
Matches: 72, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
104 54 0.75
105 18 0.25
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (104 bp):
AGTAACCGGGATAGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGGCCAACACATTCTACA
AAAAAAAAAAAAGAAAAAAATTGAGAGCATGTTGGGCTG
Found at i:11416805 original size:19 final size:19
Alignment explanation
Indices: 11416783--11416827 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11416773 TTATATTAGG
11416783 ATTTAATATTTAAGATAT-T
1 ATTTAATATTTAA-ATATGT
* *
11416802 ATTTATTATTTAAATTTGT
1 ATTTAATATTTAAATATGT
11416821 ATTTAAT
1 ATTTAAT
11416828 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATGT
Found at i:11416850 original size:14 final size:14
Alignment explanation
Indices: 11416827--11416856 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11416817 TTGTATTTAA
*
11416827 TTTATGTTTATCTT
1 TTTATATTTATCTT
11416841 TTTATATTTATCTT
1 TTTATATTTATCTT
11416855 TT
1 TT
11416857 AGAGTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.03, T:0.73
Consensus pattern (14 bp):
TTTATATTTATCTT
Found at i:11417647 original size:15 final size:16
Alignment explanation
Indices: 11417627--11417656 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11417617 CTTTCCTATT
11417627 TTCTA-TTTCTTTTAA
1 TTCTATTTTCTTTTAA
11417642 TTCTATTTTCTTTTA
1 TTCTATTTTCTTTTA
11417657 TTGTTAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (16 bp):
TTCTATTTTCTTTTAA
Found at i:11417649 original size:22 final size:22
Alignment explanation
Indices: 11417622--11417667 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
11417612 TTCGACTTTC
*
11417622 CTATTTTCTATTTCTT-TTAATT
1 CTATTTTCT-TTTATTGTTAATT
11417644 CTATTTTCTTTTATTGTTAATT
1 CTATTTTCTTTTATTGTTAATT
11417666 CT
1 CT
11417668 GTCTCTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.17, C:0.13, G:0.02, T:0.67
Consensus pattern (22 bp):
CTATTTTCTTTTATTGTTAATT
Found at i:11418151 original size:14 final size:14
Alignment explanation
Indices: 11418134--11418201 Score: 84
Period size: 14 Copynumber: 4.9 Consensus size: 14
11418124 CTCCAGCCAT
*
11418134 ATTGCCACGTCAAC
1 ATTGCCACGTCACC
* *
11418148 ATTGCCATGAT-AGC
1 ATTGCCACG-TCACC
11418162 ATTGCCACGTCACC
1 ATTGCCACGTCACC
*
11418176 ATTACCACGTCACC
1 ATTGCCACGTCACC
11418190 ATTGCCACGTCA
1 ATTGCCACGTCA
11418202 GCCACGTGAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
13 1 0.02
14 44 0.96
15 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.24
Consensus pattern (14 bp):
ATTGCCACGTCACC
Found at i:11430280 original size:97 final size:98
Alignment explanation
Indices: 11430067--11430301 Score: 276
Period size: 97 Copynumber: 2.4 Consensus size: 98
11430057 CATTACCATG
*
11430067 AAGGGAAAGATTTAAGCCGCAACGACGAATCCAGTACCATGAAAATACAAAGGGAAAAGTTTAAG
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCATGAAAATA-AAAGGGAAAAGTTTAAG
* * * ** ***
11430132 TCGCAATGGCGAACCTTATACCTAAGGGGACGTG
65 TCGCAATGACGAACCTCACACCTAAGAAGACACA
* * * * *
11430166 AAGGGAAGGATTTAAGCCGCAATGGCGAATCCAGTACCATGATAGT-AGA-GGAAAAGGTTTAAG
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCATGAAAATAAAAGGGAAAA-GTTTAAG
* * * *
11430229 TTGCAATGACGAATCTCACACCTCAGAAGATACA
65 TCGCAATGACGAACCTCACACCTAAGAAGACACA
11430263 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
1 AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCA
11430302 CGAAGGGAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
96 6 0.05
97 68 0.59
99 41 0.36
ACGTcount: A:0.39, C:0.19, G:0.25, T:0.17
Consensus pattern (98 bp):
AAGGGAAAGATTTAAGCCGCAACGGCGAATCCAGTACCATGAAAATAAAAGGGAAAAGTTTAAGT
CGCAATGACGAACCTCACACCTAAGAAGACACA
Found at i:11430308 original size:41 final size:41
Alignment explanation
Indices: 11430263--11430346 Score: 118
Period size: 41 Copynumber: 2.0 Consensus size: 41
11430253 AGAAGATACA
11430263 AAGGGAA-AGATTTAAGCCGCAACGGCGAATCC-AGTACCACG
1 AAGGGAATAG-TTTAAGCCGCAACGGCGAA-CCTAGTACCACG
* *
11430304 AAGGGAATAGTTTAAGCCGCAATGGCGAACCTAGTACCTCG
1 AAGGGAATAGTTTAAGCCGCAACGGCGAACCTAGTACCACG
11430345 AA
1 AA
11430347 AGCACGAAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
40 2 0.05
41 35 0.90
42 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.26, T:0.15
Consensus pattern (41 bp):
AAGGGAATAGTTTAAGCCGCAACGGCGAACCTAGTACCACG
Found at i:11430372 original size:49 final size:49
Alignment explanation
Indices: 11430300--11430395 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 49
11430290 AATCCAGTAC
* * *
11430300 CACGAAGGGAATAGTTTAAGCCGCAATGGCGAACCTAGTACCTCGAAAG
1 CACGAAGGGAATAGTTCAAGCCGCAATGACGAACCTAGTACCGCGAAAG
* *
11430349 CACGAAGGGAA-AGATTCAAGCCGCAATTACGAATCTAGTACCGCGAA
1 CACGAAGGGAATAG-TTCAAGCCGCAATGACGAACCTAGTACCGCGAA
11430396 GACCTTATAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
48 2 0.05
49 39 0.95
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (49 bp):
CACGAAGGGAATAGTTCAAGCCGCAATGACGAACCTAGTACCGCGAAAG
Found at i:11431010 original size:14 final size:14
Alignment explanation
Indices: 11430993--11431034 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
11430983 GCTCCAGCCA
*
11430993 CATTGCCACGTCAG
1 CATTACCACGTCAG
*
11431007 CATTACCACGTCAC
1 CATTACCACGTCAG
11431021 CATTACCACGTCAG
1 CATTACCACGTCAG
11431035 TGCCACATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.26, C:0.38, G:0.14, T:0.21
Consensus pattern (14 bp):
CATTACCACGTCAG
Found at i:11432489 original size:58 final size:59
Alignment explanation
Indices: 11432315--11432495 Score: 174
Period size: 58 Copynumber: 3.1 Consensus size: 59
11432305 AAACTATTCA
* * ** * *
11432315 AAAATTATATTTTCACCCTCAAACTTCTCCAAAATTGTATTTTTTACCTCAAAACTT-CT
1 AAAATTACATTTTCACCCTCGAACTTC-CCAAAATTACATTTTTCACCCCAAAACTTCCT
* * **
11432374 AGAAAATTACATTTTGACCCT-GAAACTTCCCAAAATTACA-ATTTCACCCCCCGAACTTCCT
1 --AAAATTACATTTTCACCCTCG-AACTTCCCAAAATTACATTTTTCA-CCCCAAAACTTCCT
* *
11432435 AAAATTACATTTT-ACCCTCGAACTTCCAAAAATTACATTTTTGACCCCAAAACTTCC-
1 AAAATTACATTTTCACCCTCGAACTTCCCAAAATTACATTTTTCACCCCAAAACTTCCT
11432492 AAAA
1 AAAA
11432496 GCCACATTTT
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
57 4 0.04
58 32 0.32
59 22 0.22
60 17 0.17
61 25 0.25
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (59 bp):
AAAATTACATTTTCACCCTCGAACTTCCCAAAATTACATTTTTCACCCCAAAACTTCCT
Found at i:11432491 original size:30 final size:28
Alignment explanation
Indices: 11432298--11432495 Score: 128
Period size: 30 Copynumber: 6.6 Consensus size: 28
11432288 TTGCCTTGGA
* *
11432298 GACCCCTAAACTATTCAAAAATTATATTTT
1 GACCCC-AAACT-TCCAAAAATTACATTTT
* * **
11432328 CACCCTCAAACTTCTCCAAAATTGTATTTTT
1 GACCC-CAAACTTC-CAAAAATTACA-TTTT
* * *
11432359 TACCTCAAAACTTCTAGAAAATTACATTTT
1 GACC-CCAAACTTCCA-AAAATTACATTTT
* * *
11432389 GACCCTGAAACTTCCCAAAATTACAATTT
1 GACCC-CAAACTTCCAAAAATTACATTTT
* * *
11432418 CACCCCCCGAACTTCCTAAAATTACATTTT
1 GA--CCCCAAACTTCCAAAAATTACATTTT
*
11432448 -ACCCTCGAACTTCCAAAAATTACATTTTT
1 GACCC-CAAACTTCCAAAAATTACA-TTTT
11432477 GACCCCAAAACTTCCAAAA
1 GACCCC-AAACTTCCAAAA
11432496 GCCACATTTT
Statistics
Matches: 134, Mismatches: 22, Indels: 24
0.74 0.12 0.13
Matches are distributed among these distances:
27 3 0.02
28 18 0.13
29 21 0.16
30 66 0.49
31 25 0.19
32 1 0.01
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.32
Consensus pattern (28 bp):
GACCCCAAACTTCCAAAAATTACATTTT
Found at i:11432510 original size:29 final size:30
Alignment explanation
Indices: 11432455--11432511 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
11432445 TTTACCCTCG
**
11432455 AACTTCCAAAAATTACATTTTTGACCCCAA
1 AACTTCCAAAAACCACATTTTTGACCCCAA
*
11432485 AACTTCCAAAAGCCACATTTTT-ACCCC
1 AACTTCCAAAAACCACATTTTTGACCCC
11432512 TTAATGTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.37, C:0.32, G:0.04, T:0.28
Consensus pattern (30 bp):
AACTTCCAAAAACCACATTTTTGACCCCAA
Found at i:11446661 original size:59 final size:57
Alignment explanation
Indices: 11446582--11446988 Score: 272
Period size: 59 Copynumber: 6.9 Consensus size: 57
11446572 TTGGACTCTA
* * * *
11446582 GAGGG-AAAAATGGAAATTTTAGGAAAATTTAAGGTTAAAAAT-GACATTTTAGACATTC
1 GAGGGTAAAAA-GGTAATTTT-TGAAATTTTAAGGTTAAAAATGGA-ATTTTGGACATTC
* ** * * * *
11446640 GAGGGTAAAAAGGTATTTTTTAGAAA-AATCAGGATCAAAAACGGGATTTTTGGACATTC
1 GAGGGTAAAAAGGTAATTTTT-GAAATTTTAAGG-TTAAAAA-TGGAATTTTGGACATTC
* * *
11446699 GAGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAAATGGAGTTTTTGGACATTC
1 GAGGGTAAAAAGGTAATTTTTGAAA-TTTTAAGGTTAAAAATGGA-ATTTTGGACATTC
* * * *
11446758 GAGAGTAAAAATGTAACTTTTTGAAATTTTGAGGTAAAAAATGGAATTTTTGGA-AGTTC
1 GAGGGTAAAAAGGTAA-TTTTTGAAATTTTAAGGTTAAAAATGGAA-TTTTGGACA-TTC
* * * *
11446817 -AGGGATAAAAATGAAATTTTTTAGAAGTTTTGAGGTTAAAAATGGAATTTTAGGA-AGTTC
1 GAGGG-TAAAAAGGTAA-TTTTT-GAAATTTTAAGGTTAAAAATGGAATTTT-GGACA-TTC
* ** * *
11446877 GAGGGTAAAAATGTAATTTTTGGAAGCTTTAGGGTCAAAAATGGAATTTTTGGA-AGTT-
1 GAGGGTAAAAAGGTAATTTTT-GAAATTTTAAGGTTAAAAATGGAA-TTTTGGACA-TTC
* * * * * *
11446935 TATGGGTAAAAATGTAATTTTTAGAAGTTTTAGGGTCAAAAATGTAATTTTGGA
1 GA-GGGTAAAAAGGTAATTTTT-GAAATTTTAAGGTTAAAAATGGAATTTTGGA
11446989 GAAATTAGGG
Statistics
Matches: 292, Mismatches: 40, Indels: 34
0.80 0.11 0.09
Matches are distributed among these distances:
57 4 0.01
58 41 0.14
59 185 0.63
60 58 0.20
61 4 0.01
ACGTcount: A:0.38, C:0.04, G:0.24, T:0.34
Consensus pattern (57 bp):
GAGGGTAAAAAGGTAATTTTTGAAATTTTAAGGTTAAAAATGGAATTTTGGACATTC
Found at i:11446769 original size:29 final size:30
Alignment explanation
Indices: 11446628--11446956 Score: 137
Period size: 29 Copynumber: 11.1 Consensus size: 30
11446618 AAAAATGACA
* *
11446628 TTTTAGACATTCGAGGGTAAAAA-GGTATT
1 TTTTGGACATTCGAGGGTAAAAATGGTAAT
* * * * * *
11446657 TTTTAGAAAAATC-AGGATCAAAAACGG-GAT
1 TTTT-GGACATTCGAGGGT-AAAAATGGTAAT
11446687 TTTTGGACATTCGAGGGT-AAAATGGTAAT
1 TTTTGGACATTCGAGGGTAAAAATGGTAAT
* ** *
11446716 TTTT-GAAAGTTTTAGGGTTAAAAATGG-AGT
1 TTTTGGACA-TTCGAGGG-TAAAAATGGTAAT
*
11446746 TTTTGGACATTCGAGAGTAAAAAT-GTAACT
1 TTTTGGACATTCGAGGGTAAAAATGGTAA-T
* *
11446776 TTTT-GAAATTTTGA-GGTAAAAAATGG-AAT
1 TTTTGGACA-TTCGAGGGT-AAAAATGGTAAT
*
11446805 TTTTGGA-AGTTC-AGGGATAAAAAT-GAAATT
1 TTTTGGACA-TTCGAGGG-TAAAAATGGTAA-T
* * *
11446835 TTTTAGA-AGTTTTGAGGTTAAAAATGG-AAT
1 TTTTGGACA--TTCGAGGGTAAAAATGGTAAT
*
11446865 TTTAGGA-AGTTCGAGGGTAAAAAT-GTAAT
1 TTTTGGACA-TTCGAGGGTAAAAATGGTAAT
*
11446894 TTTTGGA-AGCTT-TAGGGTCAAAAATGG-AAT
1 TTTTGGACA--TTCGAGGGT-AAAAATGGTAAT
*
11446924 TTTTGGA-AGTT-TATGGGTAAAAAT-GTAAT
1 TTTTGGACA-TTCGA-GGGTAAAAATGGTAAT
11446953 TTTT
1 TTTT
11446957 AGAAGTTTTA
Statistics
Matches: 232, Mismatches: 40, Indels: 56
0.71 0.12 0.17
Matches are distributed among these distances:
28 14 0.06
29 101 0.44
30 88 0.38
31 25 0.11
32 4 0.02
ACGTcount: A:0.36, C:0.04, G:0.24, T:0.36
Consensus pattern (30 bp):
TTTTGGACATTCGAGGGTAAAAATGGTAAT
Found at i:11446979 original size:30 final size:29
Alignment explanation
Indices: 11446700--11446985 Score: 251
Period size: 30 Copynumber: 9.7 Consensus size: 29
11446690 TGGACATTCG
*
11446700 AGGGT-AAAATGGTAATTTTTGAAAGTTTT
1 AGGGTAAAAAT-GTAATTTTTGGAAGTTTT
* * **
11446729 AGGGTTAAAAATGGAGTTTTTGGACA-TTCG
1 AGGG-TAAAAATGTAATTTTTGGA-AGTTTT
* *
11446759 AGAGTAAAAATGTAACTTTTT-GAAATTTT
1 AGGGTAAAAATGTAA-TTTTTGGAAGTTTT
* *
11446788 -GAGGTAAAAAATGGAATTTTTGGAAG-TTC
1 AG-GGT-AAAAATGTAATTTTTGGAAGTTTT
* *
11446817 AGGGATAAAAATGAAATTTTTTAGAAGTTTT
1 AGGG-TAAAAATGTAA-TTTTTGGAAGTTTT
* * * **
11446848 GAGGTTAAAAATGGAATTTTAGGAAGTTCG
1 -AGGGTAAAAATGTAATTTTTGGAAGTTTT
*
11446878 AGGGTAAAAATGTAATTTTTGGAAGCTTT
1 AGGGTAAAAATGTAATTTTTGGAAGTTTT
*
11446907 AGGGTCAAAAATGGAATTTTTGGAAG-TTT
1 AGGGT-AAAAATGTAATTTTTGGAAGTTTT
*
11446936 ATGGGTAAAAATGTAATTTTTAGAAGTTTT
1 A-GGGTAAAAATGTAATTTTTGGAAGTTTT
11446966 AGGGTCAAAAATGTAATTTT
1 AGGGT-AAAAATGTAATTTT
11446986 GGAGAAATTA
Statistics
Matches: 208, Mismatches: 32, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.01
29 91 0.44
30 94 0.45
31 18 0.09
32 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (29 bp):
AGGGTAAAAATGTAATTTTTGGAAGTTTT
Found at i:11446996 original size:29 final size:28
Alignment explanation
Indices: 11446685--11446998 Score: 195
Period size: 29 Copynumber: 10.6 Consensus size: 28
11446675 CAAAAACGGG
* *
11446685 ATTTTTGGACATTCGAGGGT-AAAATGGTA
1 ATTTTTGGAAATT-TAGGGTAAAAAT-GTA
*
11446714 ATTTTT-GAAAGTTTTAGGGTTAAAAATGGA
1 ATTTTTGGAAA--TTTAGGG-TAAAAATGTA
* * * *
11446744 GTTTTTGGACATTCGAGAGTAAAAATGTA
1 ATTTTTGGAAATT-TAGGGTAAAAATGTA
* *
11446773 ACTTTTT-GAAATTTTGAGGTAAAAAATGGA
1 A-TTTTTGGAAATTTAG-GGT-AAAAATGTA
* * *
11446803 ATTTTTGGAAGTTCAGGGATAAAAATGAA
1 ATTTTTGGAAATTTAGGG-TAAAAATGTA
* * * *
11446832 ATTTTTTAGAAGTTTTGAGGTTAAAAATGGA
1 A-TTTTTGGAA-ATTT-AGGGTAAAAATGTA
* * *
11446863 ATTTTAGGAAGTTCGAGGGTAAAAATGTA
1 ATTTTTGGAAATT-TAGGGTAAAAATGTA
* *
11446892 ATTTTTGGAAGCTTTAGGGTCAAAAATGGA
1 ATTTTTGGAA-ATTTAGGGT-AAAAATGTA
*
11446922 ATTTTTGGAAGTTTATGGGTAAAAATGTA
1 ATTTTTGGAAATTTA-GGGTAAAAATGTA
* *
11446951 ATTTTTAGAAGTTTTAGGGTCAAAAATGTA
1 ATTTTTGGAA-ATTTAGGGT-AAAAATGTA
*
11446981 A-TTTTGGAGAAATTAGGG
1 ATTTTTGGA-AATTTAGGG
11446999 GGTCAAAATA
Statistics
Matches: 224, Mismatches: 40, Indels: 42
0.73 0.13 0.14
Matches are distributed among these distances:
28 4 0.02
29 109 0.49
30 88 0.39
31 20 0.09
32 3 0.01
ACGTcount: A:0.36, C:0.03, G:0.25, T:0.36
Consensus pattern (28 bp):
ATTTTTGGAAATTTAGGGTAAAAATGTA
Found at i:11448983 original size:6 final size:6
Alignment explanation
Indices: 11448974--11449030 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
11448964 TTAATACAAT
*
11448974 TTTAAA TTT-AA -TTAAA TTCAAA TTTAAGA --TAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA
**
11449019 AATAAA TTTAAA
1 TTTAAA TTTAAA
11449031 ACCAATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
4 3 0.08
5 7 0.17
6 29 0.73
7 1 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (6 bp):
TTTAAA
Found at i:11448983 original size:17 final size:15
Alignment explanation
Indices: 11448958--11449029 Score: 60
Period size: 17 Copynumber: 4.7 Consensus size: 15
11448948 ATTCATTTAA
*
11448958 TTAAGTTTAATACAATT
1 TTAAATTTAATA-AA-T
11448975 TTAAATTTAATTAAAT
1 TTAAATTTAA-TAAAT
*
11448991 TCAAATTTAAGATAAAT
1 TTAAATTT-A-ATAAAT
11449008 TTAAATTTAA-AAA-
1 TTAAATTTAATAAAT
11449021 -TAAATTTAA
1 TTAAATTTAA
11449030 AACCAATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
12 9 0.18
14 3 0.06
15 1 0.02
16 9 0.18
17 24 0.49
18 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (15 bp):
TTAAATTTAATAAAT
Found at i:11449747 original size:206 final size:207
Alignment explanation
Indices: 11449382--11449788 Score: 683
Period size: 206 Copynumber: 2.0 Consensus size: 207
11449372 TCTAGTTTCA
* *
11449382 TTGACTTGGCCTTCTTCTCAGTATCTCATCAGAAAGACGACCGCGTCACTTGTTTCAATCCGTTT
1 TTGACTTGGCCTTCTTCTCAGTATCTCATCAGAAAGACGACCGCATCACTTGTTTCAATCCGCTT
* *
11449447 CTCTGTATCTCATCAGGAGGACGAATTTGGGTCCACTTCTTAGTATCTCATCAGGAAGCTAACCA
66 CTCTGTATCTCATCAGGAAGACGAATTTGGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCA
* **
11449512 TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCACA
131 TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAAGGTTCGAAGATTTGCTCACA
11449577 TTGAGCGTAGGT
196 TTGAGCGTAGGT
* * * **
11449589 TTGATTTGGTCTTCTTCTCAGTATCTCATCA-AGAAGATGACCGCATCGTTTGTTTCAATCCGCT
1 TTGACTTGGCCTTCTTCTCAGTATCTCATCAGA-AAGACGACCGCATCACTTGTTTCAATCCGCT
11449653 TCTCTGTATCTCATCAGGAAGACGAATTT-GGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC
65 TCTCTGTATCTCATCAGGAAGACGAATTTGGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC
11449717 ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAAGGTTCGAAGATTTGCTCAC
130 ATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAAGGTTCGAAGATTTGCTCAC
11449782 ATTGAGC
195 ATTGAGC
11449789 TTGGGAGGAA
Statistics
Matches: 187, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
206 104 0.56
207 83 0.44
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (207 bp):
TTGACTTGGCCTTCTTCTCAGTATCTCATCAGAAAGACGACCGCATCACTTGTTTCAATCCGCTT
CTCTGTATCTCATCAGGAAGACGAATTTGGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCA
TTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAAGAAGCTAAGGTTCGAAGATTTGCTCACA
TTGAGCGTAGGT
Found at i:11449831 original size:175 final size:175
Alignment explanation
Indices: 11449621--11449958 Score: 577
Period size: 175 Copynumber: 1.9 Consensus size: 175
11449611 ATCTCATCAA
*
11449621 GAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGAATTTGGTC
1 GAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTC
*
11449686 CACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCA
66 CACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTATCTCA
11449751 TCAAGAAGCTAAGGTTCGAAGATTTGCTCACATTGAGCTTGGGAG
131 TCAAGAAGCTAAGGTTCGAAGATTTGCTCACATTGAGCTTGGGAG
* * *
11449796 GAAGATGATCGCATCGTTTGTTTCAATCTGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTT
1 GAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTC
*
11449861 CACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTTGACCTACTTCTCAGTATCTCA
66 CACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTATCTCA
* * * **
11449926 TTAGGAAGTTGGGGTTCGAAGATTTGCTCACAT
131 TCAAGAAGCTAAGGTTCGAAGATTTGCTCACAT
11449959 CGAACGTGGG
Statistics
Matches: 152, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
175 152 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (175 bp):
GAAGATGACCGCATCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACAAATTTGGTC
CACTTCTCAGTATCTCATCAGGAAGCTAACCATTTTATTGCTTCGACCTACTTCTCAGTATCTCA
TCAAGAAGCTAAGGTTCGAAGATTTGCTCACATTGAGCTTGGGAG
Found at i:11450769 original size:49 final size:49
Alignment explanation
Indices: 11450707--11450950 Score: 301
Period size: 49 Copynumber: 5.0 Consensus size: 49
11450697 TTTGTAGTAT
* * *
11450707 TGGATCCGTCGTCGCGGCTTAGATCTTTCCCCTCATGTCTTCGTGGTAC
1 TGGATCCGCCGTTGCGGCTTAGATCTTTCCCATCATGTCTTCGTGGTAC
* * * *
11450756 TGGATCCACCGTCGCGGCTTAGATCTTTCCCTTCATGCCTTCGTGGTAC
1 TGGATCCGCCGTTGCGGCTTAGATCTTTCCCATCATGTCTTCGTGGTAC
**
11450805 TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATTGTGTCTTCGTGGTAC
1 TGGATCCGCCGTTGCGG-CTTAGATCTTTCCCATCATGTCTTCGTGGTAC
** * * **
11450855 TAAATCTGCCGTTGCGGCTTAGATCTTTCCC-TTATGTCTTCACGGTAC
1 TGGATCCGCCGTTGCGGCTTAGATCTTTCCCATCATGTCTTCGTGGTAC
* * *
11450903 TGGATCTGCCGTTGCGATCTTAGATCTTTCCCATCGTGTCTTCGTGGT
1 TGGATCCGCCGTTGCG-GCTTAGATCTTTCCCATCATGTCTTCGTGGT
11450951 GCTGAGACCT
Statistics
Matches: 169, Mismatches: 23, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
48 28 0.17
49 88 0.52
50 53 0.31
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.36
Consensus pattern (49 bp):
TGGATCCGCCGTTGCGGCTTAGATCTTTCCCATCATGTCTTCGTGGTAC
Found at i:11450853 original size:99 final size:98
Alignment explanation
Indices: 11450707--11450950 Score: 337
Period size: 98 Copynumber: 2.5 Consensus size: 98
11450697 TTTGTAGTAT
* * * * **
11450707 TGGATCCGTCGTCGCGG-CTTAGATCTTTCCCCTCATGTCTTCGTGGTACTGGATCCACCGTCGC
1 TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATCGTGTCTTCGTGGTACTAAATCCACCGTCGC
**
11450771 GGCTTAGATCTTTCCCTTCATGCCTTCGTGGTAC
66 GGCTTAGATCTTTCCCTT-ATGCCTTCACGGTAC
* ** *
11450805 TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATTGTGTCTTCGTGGTACTAAATCTGCCGTTGC
1 TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATCGTGTCTTCGTGGTACTAAATCCACCGTCGC
*
11450870 GGCTTAGATCTTTCCCTTATGTCTTCACGGTAC
66 GGCTTAGATCTTTCCCTTATGCCTTCACGGTAC
* *
11450903 TGGATCTGCCGTTGCGATCTTAGATCTTTCCCATCGTGTCTTCGTGGT
1 TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATCGTGTCTTCGTGGT
11450951 GCTGAGACCT
Statistics
Matches: 129, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
98 72 0.56
99 57 0.44
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.36
Consensus pattern (98 bp):
TGGATCCGCCGTTGCGGTCTTAGATCTTTCCCATCGTGTCTTCGTGGTACTAAATCCACCGTCGC
GGCTTAGATCTTTCCCTTATGCCTTCACGGTAC
Found at i:11457169 original size:29 final size:29
Alignment explanation
Indices: 11457137--11457311 Score: 151
Period size: 29 Copynumber: 5.9 Consensus size: 29
11457127 GGACATTCGG
11457137 GGGT-AAAATGGTAATTTTTGAAAGTTTTA
1 GGGTAAAAAT-GTAATTTTTGAAAGTTTTA
* * * **
11457166 GGGTTAAAAATGGAGTTTTTAGACA-TTCGA
1 GGG-TAAAAATGTAATTTTT-GAAAGTTTTA
* *
11457196 GTGTAAAAATGTAATTTTTGGAAA-TTTAA
1 GGGTAAAAATGTAATTTTT-GAAAGTTTTA
* * *
11457225 AGGTCAAAAATGGAATTTTTGGAAG-TTTA
1 GGGT-AAAAATGTAATTTTTGAAAGTTTTA
11457254 GGGATAAAAATGTAATTTTTGAAAGTTTTA
1 GGG-TAAAAATGTAATTTTTGAAAGTTTTA
*
11457284 GGGTCAAAAATGTAATTTTAGAGAAGTT
1 GGGT-AAAAATGTAATTTTTGA-AAGTT
11457312 CGGGGGTCAA
Statistics
Matches: 116, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
29 52 0.45
30 51 0.44
31 13 0.11
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (29 bp):
GGGTAAAAATGTAATTTTTGAAAGTTTTA
Found at i:11457175 original size:59 final size:58
Alignment explanation
Indices: 11456996--11457295 Score: 211
Period size: 59 Copynumber: 5.1 Consensus size: 58
11456986 ACCTAGGGGC
* * * * * *
11456996 AAAATGGTAATTTTGGAC-TCTCGAGGGAAAAATGGTAATTTTGGGAAAATTTAGGGTTA
1 AAAATGGGATTTTTGGACAT-TCGAGGGTAAAATGGTAATTTT-TGAAATTTTAGGGTCA
*** * * * ** * * *
11457055 AAAATAACA-TTTTAGACATTTGAGGGTAAAATGATAATTTTTAGAAA-AATCGAGATAA
1 AAAATGGGATTTTTGGACATTCGAGGGTAAAATGGTAATTTTT-GAAATTTTAG-GGTCA
* *
11457113 AAAATGGGATTTTTGGACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTA
1 AAAATGGGATTTTTGGACATTCGAGGGTAAAATGGTAATTTTTGAAA-TTTTAGGGTCA
* * * *
11457172 AAAAT-GGAGTTTTTAGACATTCGAGTGTAAAAAT-GTAATTTTTGGAAATTTAAAGGTCA
1 AAAATGGGA-TTTTTGGACATTCGAGGGT-AAAATGGTAATTTTT-GAAATTTTAGGGTCA
* *
11457231 AAAATGGAATTTTTGGA-AGTT-TAGGGATAAAAAT-GTAATTTTTGAAAGTTTTAGGGTCA
1 AAAATGGGATTTTTGGACA-TTCGAGGG-T-AAAATGGTAATTTTTGAAA-TTTTAGGGTCA
11457290 AAAATG
1 AAAATG
11457296 TAATTTTAGA
Statistics
Matches: 191, Mismatches: 37, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
57 2 0.01
58 54 0.28
59 122 0.64
60 13 0.07
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.34
Consensus pattern (58 bp):
AAAATGGGATTTTTGGACATTCGAGGGTAAAATGGTAATTTTTGAAATTTTAGGGTCA
Found at i:11457185 original size:30 final size:30
Alignment explanation
Indices: 11457141--11457311 Score: 143
Period size: 30 Copynumber: 5.7 Consensus size: 30
11457131 ATTCGGGGGT
11457141 AAAATGGTAATTTTTGAAAGTTTTAGGGTTA
1 AAAATGG-AATTTTTGAAAGTTTTAGGGTTA
* * ** *
11457172 AAAATGGAGTTTTTAGACA-TTCGAGTG-TA
1 AAAATGGAATTTTT-GAAAGTTTTAGGGTTA
* * * *
11457201 AAAATGTAATTTTTGGAAA-TTTAAAGGTCA
1 AAAATGGAATTTTT-GAAAGTTTTAGGGTTA
* *
11457231 AAAATGGAATTTTTGGAAG-TTTAGGGATA
1 AAAATGGAATTTTTGAAAGTTTTAGGGTTA
* *
11457260 AAAATGTAATTTTTGAAAGTTTTAGGGTCA
1 AAAATGGAATTTTTGAAAGTTTTAGGGTTA
* *
11457290 AAAATGTAATTTTAGAGAAGTT
1 AAAATGGAATTTTTGA-AAGTT
11457312 CGGGGGTCAA
Statistics
Matches: 110, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
29 47 0.43
30 48 0.44
31 15 0.14
ACGTcount: A:0.39, C:0.02, G:0.22, T:0.37
Consensus pattern (30 bp):
AAAATGGAATTTTTGAAAGTTTTAGGGTTA
Found at i:11457236 original size:118 final size:118
Alignment explanation
Indices: 11456996--11457305 Score: 312
Period size: 118 Copynumber: 2.6 Consensus size: 118
11456986 ACCTAGGGGC
* * * *
11456996 AAAATGGTAA-TTTTGGAC-TCTCGAGGGAAAAATGGTAATTTTGGGAAA-ATTTAGGGTTAAAA
1 AAAATGG-AATTTTTGGACAT-TCGGGGGTAAAATGGTAATTTT-TGAAAGTTTTAGGGTTAAAA
* **
11457058 AT-AACATTTTAGACATTTGAGGGTAAAATGATAATTTTTAGAAAAATCGAGATAA
63 ATGAACATTTTAGACATTCGAGGGTAAAATGATAATTTTTAGAAAAATAAAGATAA
*
11457113 AAAATGGGATTTTTGGACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAAATG
1 AAAATGGAATTTTTGGACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAAATG
* ** * * ** * *
11457178 GAGTTTTTAGACATTCGAGTGTAAAAATG-TAATTTTTGGAAATTTAAAGGTCA
66 AACATTTTAGACATTCGAGGGT-AAAATGATAATTTTTAGAAAAATAAAGATAA
** * *
11457231 AAAATGGAATTTTTGGA-AGTTTAGGGATAAAAAT-GTAATTTTTGAAAGTTTTAGGGTCAAAAA
1 AAAATGGAATTTTTGGACA-TTCGGGGGT-AAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAAA
*
11457294 TGTA-ATTTTAGA
64 TGAACATTTTAGA
11457306 GAAGTTCGGG
Statistics
Matches: 162, Mismatches: 24, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
116 5 0.03
117 58 0.36
118 88 0.54
119 11 0.07
ACGTcount: A:0.39, C:0.04, G:0.23, T:0.35
Consensus pattern (118 bp):
AAAATGGAATTTTTGGACATTCGGGGGTAAAATGGTAATTTTTGAAAGTTTTAGGGTTAAAAATG
AACATTTTAGACATTCGAGGGTAAAATGATAATTTTTAGAAAAATAAAGATAA
Found at i:11457301 original size:59 final size:59
Alignment explanation
Indices: 11457112--11457324 Score: 220
Period size: 59 Copynumber: 3.6 Consensus size: 59
11457102 AATCGAGATA
* * *
11457112 AAAAATGGGATTTTTGGACA-TTCGGGGGT-AAAATGGTAATTTTTGAAAGTTTTAGGGTT
1 AAAAATGGAATTTTTGGA-AGTTCGAGGGTAAAAAT-GTAATTTTTGAAAGTTTTAGGGTC
* * * * *
11457171 AAAAATGGAGTTTTTAGACA-TTCGAGTGTAAAAATGTAATTTTTGGAAA-TTTAAAGGTC
1 AAAAATGGAATTTTTGGA-AGTTCGAGGGTAAAAATGTAATTTTT-GAAAGTTTTAGGGTC
*
11457230 AAAAATGGAATTTTTGGAAGTT-TAGGGATAAAAATGTAATTTTTGAAAGTTTTAGGGTC
1 AAAAATGGAATTTTTGGAAGTTCGAGGG-TAAAAATGTAATTTTTGAAAGTTTTAGGGTC
* * * *
11457289 AAAAATGTAATTTTAGAGAAGTTCGGGGGTCAAAAT
1 AAAAATGGAATTTTTG-GAAGTTCGAGGGTAAAAAT
11457325 ACAATATTTG
Statistics
Matches: 128, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
58 8 0.06
59 96 0.75
60 21 0.16
61 3 0.02
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (59 bp):
AAAAATGGAATTTTTGGAAGTTCGAGGGTAAAAATGTAATTTTTGAAAGTTTTAGGGTC
Found at i:11459347 original size:20 final size:18
Alignment explanation
Indices: 11459320--11459369 Score: 75
Period size: 20 Copynumber: 2.7 Consensus size: 18
11459310 ATACAATTTT
11459320 AAAT-AATTTAAATTTAA
1 AAATAAATTTAAATTTAA
11459337 AATAGTAAATTTAAATTTAA
1 AA-A-TAAATTTAAATTTAA
11459357 AAATAAATTTAAA
1 AAATAAATTTAAA
11459370 ACCAATTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.07
18 11 0.37
19 2 0.07
20 15 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AAATAAATTTAAATTTAA
Found at i:11470602 original size:29 final size:29
Alignment explanation
Indices: 11470570--11470826 Score: 146
Period size: 30 Copynumber: 8.6 Consensus size: 29
11470560 AAAATGTGGT
*
11470570 TTTTGGAAGTTTTGGGGTCAAAAATGAAA
1 TTTTGGAAGTTTTGGGGTTAAAAATGAAA
* * * * *
11470599 TTTTTAGAAG-TTCGAGGATAAAAATGTAA
1 -TTTTGGAAGTTTTGGGGTTAAAAATGAAA
* * * * *
11470628 TTTTAAGAAGTTTGGGGGGTGAAAATGTAA
1 TTTT-GGAAGTTTTGGGGTTAAAAATGAAA
*** *
11470658 TTTTGGGAAGTTGCAGGGTTAAAAATGTAAC
1 TTTT-GGAAGTTTTGGGGTTAAAAATG-AAA
* * *
11470689 TTCTTAGAATTTTTGAGGTTAAAAAT-ATAA
1 TT-TTGGAAGTTTTGGGGTTAAAAATGA-AA
* * *
11470719 TTTTGAAAGTTTTAGGG-TAAAAATGTAAT
1 TTTTGGAAGTTTTGGGGTTAAAAATG-AAA
*
11470748 TTTTAGAAGTTTTGGGGTTAAAAAT-ACAA
1 TTTTGGAAGTTTTGGGGTTAAAAATGA-AA
* *
11470777 TTTTAGAGAAGTTTAGGGGTTAAAATAT-AAT
1 TTTT-G-GAAGTTTTGGGGTTAAAA-ATGAAA
*
11470808 TTTTGGATAGTTTAGGGGT
1 TTTTGGA-AGTTTTGGGGT
11470827 CTCCAAGGCA
Statistics
Matches: 175, Mismatches: 39, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
28 12 0.07
29 52 0.30
30 66 0.38
31 40 0.23
32 5 0.03
ACGTcount: A:0.35, C:0.02, G:0.25, T:0.38
Consensus pattern (29 bp):
TTTTGGAAGTTTTGGGGTTAAAAATGAAA
Found at i:11470798 original size:89 final size:88
Alignment explanation
Indices: 11470555--11470810 Score: 241
Period size: 89 Copynumber: 2.9 Consensus size: 88
11470545 AGACATTAAG
** * * *
11470555 GGGTAAAAATGTGGTTTTTGGAAGTTTTGGGGTCAAAAATGAAATTTTTAGAAG-TTCGAGGATA
1 GGGTAAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAAT-AAA-TTTTAGAAGTTTAGAGGTTA
* *
11470619 AAAATGTAATTTTAAGAAGTTTGGG
64 AAAATATAATTTTAAGAAGTTTGGA
* * *** * * *
11470644 GGGTGAAAATGTAATTTTGGGAAGTTGCAGGGTTAAAAATGTAACTTCTTAGAATTTTTGAGGTT
1 GGGTAAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAA--TAAATT-TTAGAAGTTTAGAGGTT
* *
11470709 AAAAATATAATTTTGA-AAGTTT-TA
63 AAAAATATAATTTTAAGAAGTTTGGA
* *
11470733 GGGTAAAAATGTAATTTTTAGAAGTTTTGGGGTTAAAAATACAATTTTAGAGAAGTTTAGGGGTT
1 GGGTAAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATA-AATTTT--AGAAGTTTAGAGGTT
11470798 -AAAATATAATTTT
63 AAAAATATAATTTT
11470811 TGGATAGTTT
Statistics
Matches: 134, Mismatches: 26, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
87 4 0.03
88 16 0.12
89 78 0.58
90 14 0.10
91 22 0.16
ACGTcount: A:0.36, C:0.02, G:0.24, T:0.37
Consensus pattern (88 bp):
GGGTAAAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATAAATTTTAGAAGTTTAGAGGTTAAA
AATATAATTTTAAGAAGTTTGGA
Found at i:11472555 original size:17 final size:18
Alignment explanation
Indices: 11472535--11472661 Score: 95
Period size: 17 Copynumber: 7.3 Consensus size: 18
11472525 ACTTATTTAT
* *
11472535 TTTAAA-TTGATAATAAC
1 TTTAAATTTGAAAATAAA
11472552 TTTAAATTTGAAAATAAA
1 TTTAAATTTGAAAATAAA
* **
11472570 TTTAAACTT-AACTTAAA
1 TTTAAATTTGAAAATAAA
* *
11472587 TTTAAATTT-AGAACAAA
1 TTTAAATTTGAAAATAAA
* *
11472604 TTTAAATTT-AAGAGAAA
1 TTTAAATTTGAAAATAAA
* *
11472621 TTTAAATTTTAAAACAAA
1 TTTAAATTTGAAAATAAA
*
11472639 -TTCAATCTT-AAAATAAA
1 TTTAAAT-TTGAAAATAAA
11472656 TTTAAA
1 TTTAAA
11472662 ATGAATTTGG
Statistics
Matches: 88, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
17 59 0.67
18 29 0.33
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.39
Consensus pattern (18 bp):
TTTAAATTTGAAAATAAA
Found at i:11472591 original size:35 final size:34
Alignment explanation
Indices: 11472546--11472661 Score: 124
Period size: 35 Copynumber: 3.4 Consensus size: 34
11472536 TTAAATTGAT
* *
11472546 AATAACTTTAAATTTGAAAATAAATTTAAACTTAA
1 AATAAATTTAAATTT-AAAACAAATTTAAACTTAA
** * *
11472581 CTTAAATTTAAATTTAGAACAAATTTAAATTTAA
1 AATAAATTTAAATTTAAAACAAATTTAAACTTAA
* * * *
11472615 GAGAAATTTAAATTTTAAAACAAATTCAATCTTAA
1 AATAAATTTAAA-TTTAAAACAAATTTAAACTTAA
11472650 AATAAATTTAAA
1 AATAAATTTAAA
11472662 ATGAATTTGG
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
34 25 0.38
35 40 0.62
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.37
Consensus pattern (34 bp):
AATAAATTTAAATTTAAAACAAATTTAAACTTAA
Found at i:11472593 original size:23 final size:23
Alignment explanation
Indices: 11472566--11472614 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
11472556 AATTTGAAAA
*
11472566 TAAATTTA-AACTTAACTTAAATT
1 TAAATTTAGAAC-AAACTTAAATT
*
11472589 TAAATTTAGAACAAATTTAAATT
1 TAAATTTAGAACAAACTTAAATT
11472612 TAA
1 TAA
11472615 GAGAAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 20 0.87
24 3 0.13
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (23 bp):
TAAATTTAGAACAAACTTAAATT
Found at i:11473325 original size:201 final size:201
Alignment explanation
Indices: 11472977--11473500 Score: 845
Period size: 201 Copynumber: 2.6 Consensus size: 201
11472967 TCTAGTTTCA
* * * * *
11472977 TTGAGTTGGTCTTCTTCTCAGTATCTCATCAGGAAGATGACCGCATCCCTTGTTT-TGA-TCGAC
1 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCT-ATTCG-C
* * * * * *
11473040 TTCTTTGTGTTTCATCAGGGAGACGAATTTGGTTCACTTCTCCGTGTCTCATCAGGAAGCTAACC
64 TTCTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACC
11473105 ATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGC
129 ATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGC
11473170 ATTGAGCG
194 ATTGAGCG
*
11473178 TTGAGTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCTATTCGCTT
1 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCTATTCGCTT
* * *
11473243 CTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCTGGAAGCTAACGAT
66 CTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
* *
11473308 TTTATTGTTTTGACCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCAT
131 TTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCAT
11473373 TGAGCG
196 TGAGCG
* *
11473379 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTCTTTCAATTCGCTT
1 TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCTATTCGCTT
11473444 CTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
66 CTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAG
11473501 ACGAATTTGG
Statistics
Matches: 299, Mismatches: 22, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
201 295 0.99
202 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (201 bp):
TTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTCTATTCGCTT
CTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCAT
TTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCAT
TGAGCG
Found at i:11473491 original size:37 final size:37
Alignment explanation
Indices: 11473448--11473537 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
11473438 TCGCTTCTTT
11473448 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
1 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
* *
11473485 GTATCTCATCAGGAAGACGAATTTGGTCCACTTTTCC
1 GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
* *
11473522 GTGTCTCATTAGGAAG
1 GTATCTCATCAGGAAG
11473538 CTAACCATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (37 bp):
GTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCA
Found at i:11473665 original size:238 final size:238
Alignment explanation
Indices: 11473240--11473738 Score: 849
Period size: 238 Copynumber: 2.1 Consensus size: 238
11473230 TTTCTATTCG
*
11473240 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCTGGAAGCTAAC
1 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCTGGAAGCTAAC
* * * * *
11473305 GATTTTATTGTTTTGACCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCG
66 CATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCG
* *
11473370 CATTGAGCGTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTT-CTTT
131 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGC-TT
* *
11473434 CAATTCGCTTCTTTGTATCTCATCAGGAAGACGAATTTGGTCCA
195 CAATTCGCTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCA
* * *
11473478 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTTTCCGTGTCTCAT-TAGGAAGCTAA
1 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCT-GGAAGCTAA
11473542 CCATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTC
65 CCATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTC
11473607 GCATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTT
130 GCATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTT
11473672 CAATTCGCTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCA
195 CAATTCGCTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCA
11473716 CTTCTCAGTATCTCATCAGGAAG
1 CTTCTCAGTATCTCATCAGGAAG
11473739 CTAACCATTT
Statistics
Matches: 246, Mismatches: 13, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
237 1 0.00
238 244 0.99
239 1 0.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.34
Consensus pattern (238 bp):
CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCTGGAAGCTAAC
CATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCG
CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTC
AATTCGCTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCA
Found at i:11473830 original size:201 final size:201
Alignment explanation
Indices: 11473478--11474261 Score: 1262
Period size: 201 Copynumber: 3.9 Consensus size: 201
11473468 ATTTGGTCCA
* * * * *
11473478 CTTCTCAGTATCTCATCAGGAAGACGAATTTGGTCCACTTTTCCGTGTCTCATTAGGAAGCTAAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
* * * *
11473543 CATTTTATTGTTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCG
66 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCG
* *
11473608 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTC
131 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTC
11473673 AATTCG
196 AATTCG
*
11473679 CTTCTCTGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
* * * * * *
11473744 CATTTTATTGTTTCGACCTACTGCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCG
66 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCG
* * *
11473809 CATTGAGCATTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTGTTTC
131 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTC
*
11473874 AATTTG
196 AATTCG
* * *
11473880 TTTCTCTGTATCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATCTTATCAGGAAGCTAAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
* *
11473945 CATTTTATTACTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTGGGGTTCAAAGATTTGCTCG
66 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCG
* * *
11474010 CATTAAGCGTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTTACTTGTTTC
131 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTC
11474075 AATTCG
196 AATTCG
11474081 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
1 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
* * *
11474146 CGTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAAGAAGCTAGGGTTCAAAGATTTGCTTG
66 CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCG
*
11474211 CATTGAGCGTCGAGTTGGCATACTTCTCTGTATCTCATCAGGAAGATGACC
131 CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACC
11474262 ATTTTATTGC
Statistics
Matches: 539, Mismatches: 44, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
201 539 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (201 bp):
CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAAC
CATTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCAGGAAGCTAGGGTTCAAAGATTTGCTCG
CATTGAGCGTCGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTGTTTC
AATTCG
Found at i:11473876 original size:439 final size:439
Alignment explanation
Indices: 11473051--11473939 Score: 1526
Period size: 439 Copynumber: 2.0 Consensus size: 439
11473041 TCTTTGTGTT
* *
11473051 TCATCAGGGAGACGAATTTGGTTCACTTCTCCGTGTCTCATCAGGAAGCTAACCATTTTATTGTT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCCGTGTCTCATCAGGAAGCTAACCATTTTATTGTT
* * *
11473116 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGAGCGTTG
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCGCATTGAGCGTCG
* * * *
11473181 AGTTGGTATACTTCTCTGTATCTCATTAGGAAGATGACCGCCTCACTTGTTTCTATTCGCTTCTC
131 AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTCAATTCGCTTCTC
* * *
11473246 TGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCTGGAAGCTAACGATTTT
196 TGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
* * * *
11473311 ATTGTTTTGACCTGCTTCTTAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGA
261 ATTGTTTCGACCTACTGCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGA
* *
11473376 GCGTTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCGCCTCACTTCTTTCAATTCG
326 GCATTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTCTTTCAATTCG
*
11473441 CTTCTTTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATC
391 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATC
* *
11473490 TCATCAGGAAGACGAATTTGGTCCACTTTTCCGTGTCTCATTAGGAAGCTAACCATTTTATTGTT
1 TCATCAGGAAGACGAATTTGGTCCACTTCTCCGTGTCTCATCAGGAAGCTAACCATTTTATTGTT
11473555 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCGCATTGAGCGTCG
66 TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCGCATTGAGCGTCG
11473620 AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTCAATTCGCTTCTC
131 AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTCAATTCGCTTCTC
11473685 TGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
196 TGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
* *
11473750 ATTGTTTCGACCTACTGCTCAGTGTCTCATCAGGAAGTTGGGGTTCGAAGATTTGCTCGCATTGA
261 ATTGTTTCGACCTACTGCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGA
* *
11473815 GCATTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTGTTTCAATTTG
326 GCATTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTCTTTCAATTCG
* *
11473880 TTTCTCTGTATCTCATTAGGAAGACGAATTTGGTCCACTTCTCAGTATC
391 CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATC
*
11473929 TTATCAGGAAG
1 TCATCAGGAAG
11473940 CTAACCATTT
Statistics
Matches: 422, Mismatches: 28, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
439 422 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (439 bp):
TCATCAGGAAGACGAATTTGGTCCACTTCTCCGTGTCTCATCAGGAAGCTAACCATTTTATTGTT
TCGACCTGCTTCTCAGTATCTCATCAGGAAGCTAGGATTCGAAGATTTGCTCGCATTGAGCGTCG
AGTTGGTATACTTCTCTGTATCTCATCAGGAAGATAACCGCCTCACTTGCTTCAATTCGCTTCTC
TGTATCTCATCAAGAAGACGAATTTGGTCCACTTCTCAGTATCTCATCAGGAAGCTAACCATTTT
ATTGTTTCGACCTACTGCTCAGTATCTCATCAGGAAGCTGGGGTTCGAAGATTTGCTCGCATTGA
GCATTGAGTTGGTATACTTCTCTGTATCTCATCAGGAAGATGACCACCTCACTTCTTTCAATTCG
CTTCTCTGTATCTCATCAGGAAGACGAATTTGGTCCACTTCTCAGTATC
Found at i:11474319 original size:115 final size:115
Alignment explanation
Indices: 11474117--11474376 Score: 396
Period size: 115 Copynumber: 2.3 Consensus size: 115
11474107 AATTTGGTCC
* * * * *
11474117 ACTTCTCAGTATCTCATCAGGAAGCTAACCGTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGACCATTTTATTGCTTCAACCTGCTTCTCAGTGTCTCAT
* * *
11474182 CAAGAAGCTAGGGTTCAAAGATTTGCTTGCATTGAGCGTCGAGTTGGCAT
66 CAAGAAGCGAGGGTTCAAAGATTTGCTCGCATTAAGCGTCGAGTTGGCAT
*
11474232 ACTTCTCTGTATCTCATCAGGAAGATGACCATTTTATTGCTTCAACCTGCTTCTCAGTGTTTCAT
1 ACTTCTCTGTATCTCATCAGGAAGATGACCATTTTATTGCTTCAACCTGCTTCTCAGTGTCTCAT
* * *
11474297 CAGGAAGCCGA-GGTTCGAAGATTTGCTCGCATTAAGCGTCGAGTTGGTAT
66 CAAGAAG-CGAGGGTTCAAAGATTTGCTCGCATTAAGCGTCGAGTTGGCAT
11474347 ACTTCTCTGTATCTCATCAGGAAGATGACC
1 ACTTCTCTGTATCTCATCAGGAAGATGACC
11474377 GCCTCACTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
115 130 0.98
116 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (115 bp):
ACTTCTCTGTATCTCATCAGGAAGATGACCATTTTATTGCTTCAACCTGCTTCTCAGTGTCTCAT
CAAGAAGCGAGGGTTCAAAGATTTGCTCGCATTAAGCGTCGAGTTGGCAT
Found at i:11474544 original size:39 final size:39
Alignment explanation
Indices: 11474454--11474545 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 39
11474444 CCCCAAACTT
* * * *
11474454 GGGGTAAAAGATAAAATGTCTTCAATTTGCCCCTGGTTC
1 GGGGTAAAAGATCAAATGGCTTCAATCTGCCCCTGGCTC
*
11474493 GGGGTAAAAGATCAAATGGCTTCAATCTGCCCCTTGCTC
1 GGGGTAAAAGATCAAATGGCTTCAATCTGCCCCTGGCTC
*
11474532 GGGGTAAGAGATCA
1 GGGGTAAAAGATCA
11474546 GAATCTTCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (39 bp):
GGGGTAAAAGATCAAATGGCTTCAATCTGCCCCTGGCTC
Found at i:11474893 original size:49 final size:49
Alignment explanation
Indices: 11474768--11474989 Score: 264
Period size: 49 Copynumber: 4.5 Consensus size: 49
11474758 ACCGGGTTCT
* * * *
11474768 CCATTGCGTCTTAAACCTTTCCCTTCAAATCTTCGTGGTACTGGATCCG
1 CCATTGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTGGATCCG
* * * * * *
11474817 CCATCGCGGTCTTAGATCTTTCTCTTCATATCTTCGTAGTAGTGAATCTG
1 CCATTGCGG-CTTAGATCTTTCCCTTCATATCTTCGTGGTACTGGATCCG
* * * *
11474867 TCGTTGCGGCTTAGATCTTTCCCTTCATGTCTTCGTGGTAATGGATCCG
1 CCATTGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTGGATCCG
* * * *
11474916 CCATTGCGGCTTAGATTTTTCCTTTGATGTCTTCGTGGTACTGGATCCG
1 CCATTGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTGGATCCG
*
11474965 CCGTTGCGGCTTAGATCTTTCCCTT
1 CCATTGCGGCTTAGATCTTTCCCTT
11474990 TTGTCTTCTA
Statistics
Matches: 144, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 106 0.74
50 38 0.26
ACGTcount: A:0.14, C:0.26, G:0.21, T:0.39
Consensus pattern (49 bp):
CCATTGCGGCTTAGATCTTTCCCTTCATATCTTCGTGGTACTGGATCCG
Found at i:11475005 original size:49 final size:48
Alignment explanation
Indices: 11474797--11475045 Score: 243
Period size: 49 Copynumber: 5.1 Consensus size: 48
11474787 TCCCTTCAAA
* * * * *
11474797 TCTTCGTGGTACTGGATCCGCCATCGCGGTCTTAGATCTTTCTCTTCATA
1 TCTTCGTGGTACTGGATCCGCCGTTGCGG-CTTAGATCTTTCCCTT-TTG
* * * * * *
11474847 TCTTCGTAGTAGTGAATCTGTCGTTGCGGCTTAGATCTTTCCCTTCATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTT-TTG
* * *
11474896 TCTTCGTGGTAATGGATCCGCCATTGCGGCTTAGAT-TTTTCCTTTGATG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTT--TG
11474945 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTTTG
1 TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTTTG
* ** *
11474993 TCTTC-TAAGGTACACGG-TGTGCCGTTGCGGCTTAGACCTTTCCCTTTTG
1 TCTTCGT--GGTAC-TGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTTTG
11475042 TCTT
1 TCTT
11475046 TTTACGGTAC
Statistics
Matches: 169, Mismatches: 24, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
47 1 0.01
48 14 0.08
49 122 0.72
50 32 0.19
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.40
Consensus pattern (48 bp):
TCTTCGTGGTACTGGATCCGCCGTTGCGGCTTAGATCTTTCCCTTTTG
Found at i:11475864 original size:6 final size:6
Alignment explanation
Indices: 11475853--11475953 Score: 57
Period size: 6 Copynumber: 16.5 Consensus size: 6
11475843 TGACCTCTCC
*
11475853 TTTTCT TTTTCTT TTTTCT TCTTT-T TTTTAT TTTT-T TTGTT-T TTTGT-T
1 TTTTCT TTTTC-T TTTTCT T-TTTCT TTTTCT TTTTCT TT-TTCT TTT-TCT
* * * * * *
11475901 TTTTGTT TTTTGT TTTTGT TTTTGT TTTTCTT TTTTTT TTTTCC TTTTCT
1 TTTT-CT TTTTCT TTTTCT TTTTCT TTTTC-T TTTTCT TTTTCT TTTTCT
11475951 TTT
1 TTT
11475954 ATTCATTGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 16
0.79 0.06 0.16
Matches are distributed among these distances:
5 8 0.10
6 54 0.67
7 19 0.23
ACGTcount: A:0.01, C:0.08, G:0.06, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:11475868 original size:1 final size:1
Alignment explanation
Indices: 11475853--11475942 Score: 72
Period size: 1 Copynumber: 90.0 Consensus size: 1
11475843 TGACCTCTCC
* * * * * * * * *
11475853 TTTTCTTTTTCTTTTTTCTTCTTTTTTTTATTTTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
11475918 GTTTTTGTTTTTCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
11475943 CCTTTTCTTT
Statistics
Matches: 65, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.01, C:0.06, G:0.07, T:0.87
Consensus pattern (1 bp):
T
Found at i:11475871 original size:13 final size:13
Alignment explanation
Indices: 11475853--11475953 Score: 71
Period size: 14 Copynumber: 7.7 Consensus size: 13
11475843 TGACCTCTCC
11475853 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
*
11475866 TTTTCTTCTTTTTT
1 TTTTCTT-TTTCTT
* *
11475880 TTATTTTTTTTGTT
1 TT-TTCTTTTTCTT
* *
11475894 TTTTGTTTTTTGTT
1 TTTT-CTTTTTCTT
* *
11475908 TTTTGTTTTT-GT
1 TTTTCTTTTTCTT
*
11475920 TTTTGTTTTTCTT
1 TTTTCTTTTTCTT
* *
11475933 TTTTTTTTTTC-C
1 TTTTCTTTTTCTT
11475945 TTTTCTTTT
1 TTTTCTTTT
11475954 ATTCATTGAA
Statistics
Matches: 75, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
12 19 0.25
13 25 0.33
14 27 0.36
15 4 0.05
ACGTcount: A:0.01, C:0.08, G:0.06, T:0.85
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:11475876 original size:10 final size:9
Alignment explanation
Indices: 11475858--11475953 Score: 72
Period size: 9 Copynumber: 10.1 Consensus size: 9
11475848 TCTCCTTTTC
11475858 TTTTTCTTT
1 TTTTTCTTT
11475867 TTTCTTCTTT
1 TTT-TTCTTT
*
11475877 TTTTTATTT
1 TTTTTCTTT
*
11475886 TTTTTGTTT
1 TTTTTCTTT
11475895 TTTGTT-TTT
1 TTT-TTCTTT
11475904 TGTTTT-TTGT
1 T-TTTTCTT-T
*
11475914 TTTTGTTTTT
1 TTTT-TCTTT
11475924 GTTTTTCTTT
1 -TTTTTCTTT
11475934 TTTTT-TTT
1 TTTTTCTTT
11475942 TCCTTTTCTTT
1 T--TTTTCTTT
11475953 T
1 T
11475954 ATTCATTGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 18
0.78 0.03 0.19
Matches are distributed among these distances:
8 4 0.05
9 35 0.47
10 25 0.34
11 10 0.14
ACGTcount: A:0.01, C:0.07, G:0.06, T:0.85
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:11481128 original size:29 final size:29
Alignment explanation
Indices: 11481096--11481346 Score: 191
Period size: 29 Copynumber: 8.5 Consensus size: 29
11481086 AATTCGAGGC
11481096 TAAAATGTAATTTTGGGAAGTTTTAGGGT
1 TAAAATGTAATTTTGGGAAGTTTTAGGGT
* *
11481125 TAAAATATAATTTTGGAAAGTTTTAGGGT
1 TAAAATGTAATTTTGGGAAGTTTTAGGGT
* *
11481154 TAAAATATAATTTTTGGAAG-TTTAGGGGT
1 TAAAATGTAATTTTGGGAAGTTTTA-GGGT
* * * * * *
11481183 GAAAACGTTATTGTGGGATGTTTTGGGGT
1 TAAAATGTAATTTTGGGAAGTTTTAGGGT
* ***
11481212 CAAAAATGTAATTTTTTCAAAG-TTTAGGGGT
1 -TAAAATGTAA-TTTTGGGAAGTTTTA-GGGT
* * * *
11481243 CAAAAATATAATTTTTGAAAGTTTTAGGGT
1 -TAAAATGTAATTTTGGGAAGTTTTAGGGT
* * *
11481273 AAAAATGTAATTTTTGGAAGTTTTGGGGT
1 TAAAATGTAATTTTGGGAAGTTTTAGGGT
* **
11481302 TAAAAATGCAATTTTGGAGAAGTTCAAGGGT
1 T-AAAATGTAATTTTGG-GAAGTTTTAGGGT
* *
11481333 CAAAATATAATTTT
1 TAAAATGTAATTTT
11481347 TGGTCAGTTT
Statistics
Matches: 179, Mismatches: 35, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
28 4 0.02
29 92 0.51
30 50 0.28
31 33 0.18
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.39
Consensus pattern (29 bp):
TAAAATGTAATTTTGGGAAGTTTTAGGGT
Found at i:11481265 original size:90 final size:89
Alignment explanation
Indices: 11481097--11481363 Score: 247
Period size: 90 Copynumber: 3.0 Consensus size: 89
11481087 ATTCGAGGCT
* * * * * ** *
11481097 AAAATGTAATTTTGGGAAGTTTTAGGGTTAAAATAT--AATTTTGGA-AAGTTTTAGGGTTAAAA
1 AAAACGTAATTGTGGGAAGTTTTGGGGTCAAAA-ATGCAATTTTGCAGAAGTTCAAGGGTCAAAA
* *
11481159 TATAATTTTTGGAAGTTTAGGGGTG
65 TATAATTTTTGAAAGTTTAGGGGTA
* * * * * *
11481184 AAAACGTTATTGTGGGATGTTTTGGGGTCAAAAATGTAATTTTTTCA-AAGTTTAGGGGTCAAAA
1 AAAACGTAATTGTGGGAAGTTTTGGGGTCAAAAATGCAA-TTTTGCAGAAGTTCAAGGGTC-AAA
11481248 ATATAATTTTTGAAAGTTTTA-GGGTA
64 ATATAATTTTTGAAAG-TTTAGGGGTA
* * * * *
11481274 AAAATGTAATTTTTGGAAGTTTTGGGGTTAAAAATGCAATTTTGGAGAAGTTCAAGGGTCAAAAT
1 AAAACGTAATTGTGGGAAGTTTTGGGGTCAAAAATGCAATTTTGCAGAAGTTCAAGGGTCAAAAT
**
11481339 ATAATTTTTGGTCAGTTTAGGGGTA
66 ATAATTTTT-GAAAGTTTAGGGGTA
11481364 TTCAGGGCAA
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
86 2 0.01
87 27 0.18
88 2 0.01
89 38 0.26
90 73 0.50
91 4 0.03
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.39
Consensus pattern (89 bp):
AAAACGTAATTGTGGGAAGTTTTGGGGTCAAAAATGCAATTTTGCAGAAGTTCAAGGGTCAAAAT
ATAATTTTTGAAAGTTTAGGGGTA
Found at i:11482361 original size:22 final size:21
Alignment explanation
Indices: 11482321--11482381 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
11482311 AGTATTTTAT
**
11482321 TAATATTATTAATGCTACT-G
1 TAATATTATTAATATTACTAG
11482341 CTAATAATTATTAATATTACTAG
1 -TAAT-ATTATTAATATTACTAG
*
11482364 TATTTATTATTAATATTA
1 TA-ATATTATTAATATTA
11482382 ATAAAGCTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 4 0.12
22 28 0.82
23 2 0.06
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (21 bp):
TAATATTATTAATATTACTAG
Found at i:11483012 original size:17 final size:16
Alignment explanation
Indices: 11482992--11483085 Score: 91
Period size: 17 Copynumber: 5.5 Consensus size: 16
11482982 ACTTTTTTAT
*
11482992 TTTAAATTGATAATAAC
1 TTTAAATTGA-AATAAA
11483009 TTTAAATTTGAAAATAAA
1 TTTAAA-TTG-AAATAAA
11483027 TTTAAACTT-AAATTAAA
1 TTTAAA-TTGAAA-TAAA
*
11483044 TTTAAATTTAGAATAAA
1 TTTAAATTGA-AATAAA
*
11483061 TTTAAATTTAAGATAAA
1 TTTAAATTGAA-ATAAA
11483078 TTTAAATT
1 TTTAAATT
11483086 TTAAAACAAA
Statistics
Matches: 69, Mismatches: 2, Indels: 12
0.83 0.02 0.14
Matches are distributed among these distances:
16 6 0.09
17 44 0.64
18 18 0.26
19 1 0.01
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (16 bp):
TTTAAATTGAAATAAA
Found at i:11483048 original size:11 final size:11
Alignment explanation
Indices: 11483010--11483068 Score: 59
Period size: 11 Copynumber: 5.2 Consensus size: 11
11483000 GATAATAACT
11483010 TTAAATTTGAAA
1 TTAAATTT-AAA
*
11483022 ATAAATTTAAA
1 TTAAATTTAAA
11483033 CTTAAA-TTAAA
1 -TTAAATTTAAA
11483044 TTTAAATTTAGAA
1 -TTAAATTTA-AA
11483057 -TAAATTTAAA
1 TTAAATTTAAA
11483067 TT
1 TT
11483069 TAAGATAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
10 2 0.05
11 22 0.55
12 14 0.35
13 2 0.05
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (11 bp):
TTAAATTTAAA
Found at i:11483048 original size:35 final size:33
Alignment explanation
Indices: 11483003--11483118 Score: 124
Period size: 35 Copynumber: 3.4 Consensus size: 33
11482993 TTAAATTGAT
*
11483003 AATAACTTTAAATTTGAAAATAAATTTAAACTTA
1 AATAAATTTAAATTT-AAAATAAATTTAAACTTA
* *
11483037 AATTAAATTTAAATTTAGAATAAATTTAAATTTA
1 AA-TAAATTTAAATTTAAAATAAATTTAAACTTA
* * *
11483071 AGATAAATTTAAATTTTAAAACAAATTCAATCTTAA
1 A-ATAAATTTAAA-TTTAAAATAAATTTAAACTT-A
*
11483107 AATAAATCTAAA
1 AATAAATTTAAA
11483119 ATGAATTTGG
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
34 29 0.42
35 38 0.55
36 2 0.03
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
AATAAATTTAAATTTAAAATAAATTTAAACTTA
Found at i:11483086 original size:17 final size:17
Alignment explanation
Indices: 11483004--11483086 Score: 98
Period size: 17 Copynumber: 4.8 Consensus size: 17
11482994 TAAATTGATA
* *
11483004 ATAACTTTAAATTTGAAA
1 ATAAATTTAAATTT-AAG
*
11483022 ATAAATTTAAACTTAA-
1 ATAAATTTAAATTTAAG
11483038 ATTAAATTTAAATTT-AG
1 A-TAAATTTAAATTTAAG
11483055 AATAAATTTAAATTTAAG
1 -ATAAATTTAAATTTAAG
11483073 ATAAATTTAAATTT
1 ATAAATTTAAATTT
11483087 TAAAACAAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.03
17 41 0.71
18 15 0.26
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (17 bp):
ATAAATTTAAATTTAAG
Found at i:11483090 original size:7 final size:6
Alignment explanation
Indices: 11483009--11483086 Score: 69
Period size: 6 Copynumber: 13.5 Consensus size: 6
11482999 TGATAATAAC
* *
11483009 TTTAAA TTTGAAA -ATAAA TTTAAA CTTAAA -TTAAA TTTAAA TTTAGAA
1 TTTAAA TTT-AAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTA-AA
11483057 --TAAA TTTAAA TTTAAGA --TAAA TTTAAA TTT
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTT
11483087 TAAAACAAAT
Statistics
Matches: 60, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
4 3 0.05
5 13 0.22
6 38 0.63
7 6 0.10
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:11483111 original size:52 final size:52
Alignment explanation
Indices: 11482992--11483118 Score: 132
Period size: 52 Copynumber: 2.4 Consensus size: 52
11482982 ACTTTTTTAT
* * * **
11482992 TTTAAATTGATAATAACTTTAAATTTGAAAATAAATTTAAACTTAAATTAAA
1 TTTAAATTTAAAATAAATTTAAATTTGAAAATAAATTTAAACTTAAAACAAA
* * *
11483044 TTTAAATTTAGAATAAATTTAAATTT-AAGATAAATTTAAATTTTAAAACAAA
1 TTTAAATTTAAAATAAATTTAAATTTGAAAATAAATTTAAA-CTTAAAACAAA
* *
11483096 -TTCAATCTTAAAATAAATCTAAA
1 TTTAAAT-TTAAAATAAATTTAAA
11483119 ATGAATTTGG
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
51 18 0.29
52 45 0.71
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (52 bp):
TTTAAATTTAAAATAAATTTAAATTTGAAAATAAATTTAAACTTAAAACAAA
Found at i:11485382 original size:23 final size:22
Alignment explanation
Indices: 11485356--11485399 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
11485346 TAATTTTAAA
*
11485356 AAAAGGGCTTAAATTAAAAAAAT
1 AAAAGGACTTAAA-TAAAAAAAT
*
11485379 AAAAGGATTTAAATAAAAAAA
1 AAAAGGACTTAAATAAAAAAA
11485400 GAATAAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.66, C:0.02, G:0.11, T:0.20
Consensus pattern (22 bp):
AAAAGGACTTAAATAAAAAAAT
Found at i:11485467 original size:21 final size:21
Alignment explanation
Indices: 11485426--11485473 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
11485416 TTAAAAGAAA
11485426 TAAAAACAAAAAGATTAAATT
1 TAAAAACAAAAAGATTAAATT
* * * *
11485447 TTAAAACAAAAGGGTTTAATT
1 TAAAAACAAAAAGATTAAATT
11485468 TAAAAA
1 TAAAAA
11485474 AACAAATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.27
Consensus pattern (21 bp):
TAAAAACAAAAAGATTAAATT
Found at i:11485474 original size:22 final size:22
Alignment explanation
Indices: 11485427--11485529 Score: 59
Period size: 21 Copynumber: 4.5 Consensus size: 22
11485417 TAAAAGAAAT
11485427 AAAAACAAAAAGATTAAATTT-
1 AAAAACAAAAAGATTAAATTTA
* * * *
11485448 TAAAACAAAAGGGTTTAATTTAA
1 AAAAACAAAAAGATTAAATTT-A
11485471 AAAAACAAATAAAATGATT-AA-TTA
1 AAAAAC--A-AAAA-GATTAAATTTA
* *
11485495 AAAAATAAAAGGATTTAAATTTTA
1 AAAAACAAAAAGA-TTAAA-TTTA
11485519 AGAAAACAAAA
1 A-AAAACAAAA
11485530 TAAAAAGGGA
Statistics
Matches: 61, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
20 2 0.03
21 22 0.36
22 3 0.05
23 5 0.08
24 10 0.16
25 11 0.18
26 5 0.08
27 3 0.05
ACGTcount: A:0.63, C:0.04, G:0.08, T:0.25
Consensus pattern (22 bp):
AAAAACAAAAAGATTAAATTTA
Found at i:11490470 original size:59 final size:56
Alignment explanation
Indices: 11490368--11490713 Score: 286
Period size: 59 Copynumber: 5.9 Consensus size: 56
11490358 TTGGATACCC
* * * * *
11490368 GAGGGTAAAATGGTAATTTTGGGAAAGTTAGTGGTCAAGAATGGAATTTTTAGACATTT
1 GAGGGTAAAAT-GTAATTTTGGAAAAATTAG-GGTTAAAAATGGAATTTTTGGA-ATTT
* * *
11490427 GAGGGTAAAATGGTAATTTTGGAAAAATTAGGGTTAAAAAATGGAATTCTTGAAAGTTC
1 GAGGGTAAAAT-GTAATTTTGGAAAAATTAGGGTT-AAAAATGGAATTTTTGGAA-TTT
* * *
11490486 GGGGGTAAAAATATAATTTTTGGAAAAATTAGGGTT-AAAATGGAATTTTTGGAAGTTC
1 GAGGGT-AAAATGTAA-TTTTGGAAAAATTAGGGTTAAAAATGGAATTTTTGGAA-TTT
* * * * * *
11490544 GAGGGTAAAGATGTAATTTT-TAGAAAGTTTGGAGTCAAAAATGGGATTTTTGGGAGTTT
1 GAGGGTAAA-ATGTAATTTTGGA-AAAATTAGG-GTTAAAAATGGAATTTTT-GGAATTT
* * * *
11490603 GGGGGTAAAATGGTAATTTTTGGAAAAATCAAGGTT-AAAATGGAATTTTTGGAAGTT
1 GAGGGTAAAAT-GTAA-TTTTGGAAAAATTAGGGTTAAAAATGGAATTTTTGGAATTT
* * * *
11490660 CAGGGTAAAAATGTAAATTTTGGAAAAATTATGG-TCAAAATGTAATTTTTGGAA
1 GAGGGT-AAAATGT-AATTTTGGAAAAATTAGGGTTAAAAATGGAATTTTTGGAA
11490714 AGTTTAGAGG
Statistics
Matches: 236, Mismatches: 36, Indels: 32
0.78 0.12 0.11
Matches are distributed among these distances:
56 2 0.01
57 57 0.24
58 58 0.25
59 82 0.35
60 36 0.15
61 1 0.00
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.34
Consensus pattern (56 bp):
GAGGGTAAAATGTAATTTTGGAAAAATTAGGGTTAAAAATGGAATTTTTGGAATTT
Found at i:11490548 original size:117 final size:113
Alignment explanation
Indices: 11490370--11490741 Score: 365
Period size: 117 Copynumber: 3.2 Consensus size: 113
11490360 GGATACCCGA
* * * * * *
11490370 GGGTAAAATGGTAA-TTTTGGGAAAGTTAGTGGTCAAGAATGGAATTTTTAGACA-TTTGAGGGT
1 GGGTAAAAT-ATAATTTTTGGAAAAATTAG-GGTTAA-AATGGAATTTTTGGA-AGTTCGAGGGT
* *
11490433 AAAATGGTAATTTTGGAAAAATTAGGGTTAAAAAATGGAATTCTTGAAAGTTCGG
62 AAAAT-GTAATTTTGGAAAAATTAGGG-T-AAAAATGGAATTTTTGAAAGTTTGG
11490488 GGGTAAAAATATAATTTTTGGAAAAATTAGGGTTAAAATGGAATTTTTGGAAGTTCGAGGGTAAA
1 GGGT-AAAATATAATTTTTGGAAAAATTAGGGTTAAAATGGAATTTTTGGAAGTTCGAGGGTAAA
* * * * **
11490553 GATGTAATTTT-TAGAAAGTTTGGAGTCAAAAATGGGATTTTTGGGAGTTTGG
65 -ATGTAATTTTGGA-AAAATTAGG-GT-AAAAATGGAATTTTTGAAAGTTTGG
* * *
11490605 GGGTAAAATGGTAATTTTTGGAAAAATCAAGGTTAAAATGGAATTTTTGGAAGTTC-AGGGTAAA
1 GGGTAAAAT-ATAATTTTTGGAAAAATTAGGGTTAAAATGGAATTTTTGGAAGTTCGAGGGT-AA
* * * *
11490669 AATGTAAATTTTGGAAAAATTATGGTCAAAATGTAATTTTTGGAAAGTTTAG
64 AATGT-AATTTTGGAAAAATTAGGGTAAAAATGGAATTTTT-GAAAGTTTGG
* *
11490721 AGGTCAAATATAATTTTTGGA
1 GGGTAAAATATAATTTTTGGA
11490742 CAGTTTAGGG
Statistics
Matches: 212, Mismatches: 31, Indels: 25
0.79 0.12 0.09
Matches are distributed among these distances:
115 23 0.11
116 32 0.15
117 123 0.58
118 16 0.08
119 18 0.08
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (113 bp):
GGGTAAAATATAATTTTTGGAAAAATTAGGGTTAAAATGGAATTTTTGGAAGTTCGAGGGTAAAA
TGTAATTTTGGAAAAATTAGGGTAAAAATGGAATTTTTGAAAGTTTGG
Found at i:11490729 original size:29 final size:29
Alignment explanation
Indices: 11490371--11490749 Score: 167
Period size: 29 Copynumber: 13.0 Consensus size: 29
11490361 GATACCCGAG
* *
11490371 GGTAAAATGGTAATTTTGGGAAAG-TTAGT
1 GGTAAAAT-GTAATTTTTGGAAAGTTTAGA
* * *
11490400 GGTCAAGAATGGAATTTTTAGACA-TTT-GA
1 GGT-AA-AATGTAATTTTTGGAAAGTTTAGA
**
11490429 GGGTAAAATGGTAA-TTTTGGAAAAATTAG-
1 -GGTAAAAT-GTAATTTTTGGAAAGTTTAGA
* * ** *
11490458 GGTTAAAAAATGGAATTCTT-GAAAGTTCGGG
1 GG-T--AAAATGTAATTTTTGGAAAGTTTAGA
* **
11490489 GGTAAAAATATAATTTTTGGAAAAATTAG-
1 GGT-AAAATGTAATTTTTGGAAAGTTTAGA
* *
11490518 GGTTAAAATGGAATTTTTGG-AAG-TTCGA
1 GG-TAAAATGTAATTTTTGGAAAGTTTAGA
* *
11490546 GGGTAAAGATGTAATTTTTAGAAAGTTTGGA
1 -GGTAAA-ATGTAATTTTTGGAAAGTTTAGA
** * * *
11490577 -GTCAAAAATGGGATTTTTGG-GAGTTTGGG
1 GGT--AAAATGTAATTTTTGGAAAGTTTAGA
** *
11490606 GGTAAAATGGTAATTTTTGGAAAAATCA-A
1 GGTAAAAT-GTAATTTTTGGAAAGTTTAGA
* *
11490635 GGTTAAAATGGAATTTTTGG-AAGTTCAG-
1 GG-TAAAATGTAATTTTTGGAAAGTTTAGA
* ** *
11490663 GGTAAAAATGTAAATTTTGGAAAAATTA-T
1 GGT-AAAATGTAATTTTTGGAAAGTTTAGA
11490692 GGTCAAAATGTAATTTTTGGAAAGTTTAGA
1 GGT-AAAATGTAATTTTTGGAAAGTTTAGA
* * *
11490722 GGTCAAATATAATTTTTGGACAGTTTAG
1 GGTAAAATGTAATTTTTGGAAAGTTTAG
11490750 GGGCCTCTAG
Statistics
Matches: 262, Mismatches: 58, Indels: 60
0.69 0.15 0.16
Matches are distributed among these distances:
27 4 0.02
28 44 0.17
29 133 0.51
30 61 0.23
31 20 0.08
ACGTcount: A:0.37, C:0.03, G:0.26, T:0.34
Consensus pattern (29 bp):
GGTAAAATGTAATTTTTGGAAAGTTTAGA
Done.