Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 5 of 163
Found at i:1581426 original size:90 final size:90
Alignment explanation
Indices: 1581075--1581416 Score: 508
Period size: 90 Copynumber: 3.8 Consensus size: 90
1581065 GTTTGGGGGG
* * *
1581075 AAATGGTAATTTTTGAAAA-TTTTAGGGTAAAAATGTAATTTTTTAGAAA-TTTTGGGGTCAAAA
1 AAAT-GTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAA-TTTCTAGAAAGTTTTGGGGTCAAAA
* *
1581138 TATGATTTTGGAAAAGTTTTGGGGTCA
64 TATAATTTTGGAAAAGTTTTAGGGTCA
1581165 AAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTCTAGAAAGTTTTGGGGTCAAAATA
1 AAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTCTAGAAAGTTTTGGGGTCAAAATA
1581230 TAATTTTGGAAAAGTTTTAGGGTCA
66 TAATTTTGGAAAAGTTTTAGGGTCA
* ** * * * *
1581255 AAATATAATTTTTAAAAAGTTTTGGGGTCAAAATGTAATTTCTAGAAAGTTGTGGGGTCGAAATG
1 AAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTCTAGAAAGTTTTGGGGTCAAAATA
1581320 TAATTTTGGAAAAGTTTTAGGGTCA
66 TAATTTTGGAAAAGTTTTAGGGTCA
* * * *
1581345 AAATGTAATTTTGGAAAAGTTTTGGGGTTAAAATGTAATTTCTAGAAAGTTTTAGGGTCAAAATG
1 AAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTCTAGAAAGTTTTGGGGTCAAAATA
1581410 TAATTTT
66 TAATTTT
1581417 TGGATAGTTT
Statistics
Matches: 231, Mismatches: 19, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
89 22 0.10
90 209 0.90
ACGTcount: A:0.36, C:0.04, G:0.22, T:0.38
Consensus pattern (90 bp):
AAATGTAATTTTGGAAAAGTTTTAGGGTCAAAATGTAATTTCTAGAAAGTTTTGGGGTCAAAATA
TAATTTTGGAAAAGTTTTAGGGTCA
Found at i:1583138 original size:6 final size:6
Alignment explanation
Indices: 1583113--1583160 Score: 69
Period size: 6 Copynumber: 7.5 Consensus size: 6
1583103 TAATTTGACT
1583113 TTTTAA TGTTTAGTA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
1 TTTTAA T-TTTA--A TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
1583161 AAAGTAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
6 29 0.74
7 4 0.10
8 4 0.10
9 2 0.05
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:1583170 original size:17 final size:16
Alignment explanation
Indices: 1583150--1583221 Score: 67
Period size: 16 Copynumber: 4.5 Consensus size: 16
1583140 TTTTAATTTT
1583150 AATTTTAATTTAAAGTA
1 AATTTTAATTT-AAGTA
* *
1583167 AA-TTTAA-ATAATTA
1 AATTTTAATTTAAGTA
*
1583181 AATTTAAATTTAAGATA
1 AATTTTAATTTAAG-TA
* *
1583198 AATTTAAATTTAAATA
1 AATTTTAATTTAAGTA
1583214 AATTTTAA
1 AATTTTAA
1583222 AAAAAAGGTT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
14 6 0.13
15 5 0.11
16 17 0.38
17 17 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AATTTTAATTTAAGTA
Found at i:1583174 original size:6 final size:6
Alignment explanation
Indices: 1583127--1583212 Score: 70
Period size: 6 Copynumber: 14.3 Consensus size: 6
1583117 AATGTTTAGT
* * * * * *
1583127 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTAA A-GTAA ATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA
1583174 ATAATTAA ATTTAA ATTTAA GA--TAA ATTTAA ATTTAA AT
1 AT--TTAA ATTTAA ATTTAA -ATTTAA ATTTAA ATTTAA AT
1583213 AAATTTTAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
4 1 0.01
5 7 0.10
6 56 0.79
7 1 0.01
8 6 0.08
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (6 bp):
ATTTAA
Found at i:1583191 original size:37 final size:37
Alignment explanation
Indices: 1583142--1583214 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
1583132 AATTTTAATT
* * **
1583142 TTAATTTTAATTTTAATTTAAA-GTAAATTTAAATAA
1 TTAAATTTAAATTTAAGATAAATGTAAATTTAAATAA
*
1583178 TTAAATTTAAATTTAAGATAAATTTAAATTTAAATAA
1 TTAAATTTAAATTTAAGATAAATGTAAATTTAAATAA
1583215 ATTTTAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
36 18 0.58
37 13 0.42
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (37 bp):
TTAAATTTAAATTTAAGATAAATGTAAATTTAAATAA
Found at i:1583222 original size:11 final size:10
Alignment explanation
Indices: 1583156--1583206 Score: 52
Period size: 11 Copynumber: 4.9 Consensus size: 10
1583146 TTTTAATTTT
1583156 AATTTAAAGTA
1 AATTTAAA-TA
1583167 AATTTAAAT-
1 AATTTAAATA
1583176 AA-TTAAATTTA
1 AATTTAAA--TA
1583187 AATTTAAGATA
1 AATTTAA-ATA
1583198 AATTTAAAT
1 AATTTAAAT
1583207 TTAAATAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
8 5 0.14
9 2 0.06
10 4 0.11
11 19 0.54
12 4 0.11
13 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (10 bp):
AATTTAAATA
Found at i:1583222 original size:17 final size:16
Alignment explanation
Indices: 1583150--1583218 Score: 88
Period size: 17 Copynumber: 4.3 Consensus size: 16
1583140 TTTTAATTTT
*
1583150 AATTTTAATTTAAAGTA
1 AATTTAAATTTAAA-TA
*
1583167 AATTTAAA--TAATTA
1 AATTTAAATTTAAATA
1583181 AATTTAAATTTAAGATA
1 AATTTAAATTTAA-ATA
1583198 AATTTAAATTTAAATA
1 AATTTAAATTTAAATA
1583214 AATTT
1 AATTT
1583219 TAAAAAAAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
14 10 0.22
15 3 0.07
16 11 0.24
17 22 0.48
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
AATTTAAATTTAAATA
Found at i:1583529 original size:14 final size:14
Alignment explanation
Indices: 1583510--1583537 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1583500 ATTTTACTCT
1583510 CTTAGTTATTCGAA
1 CTTAGTTATTCGAA
1583524 CTTAGTTATTCGAA
1 CTTAGTTATTCGAA
1583538 TCAACTCGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
CTTAGTTATTCGAA
Found at i:1584697 original size:23 final size:24
Alignment explanation
Indices: 1584641--1584700 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
1584631 TTATTAACAT
*
1584641 TGTTCATGAACCTGTTCAATTATA
1 TGTTCATGAACATGTTCAATTATA
**
1584665 TGTTCATGAACATGTTCGTTTA-A
1 TGTTCATGAACATGTTCAATTATA
*
1584688 TGTTCGTGAACAT
1 TGTTCATGAACAT
1584701 TACAGTCGCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 13 0.41
24 19 0.59
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.42
Consensus pattern (24 bp):
TGTTCATGAACATGTTCAATTATA
Found at i:1584962 original size:17 final size:17
Alignment explanation
Indices: 1584940--1585003 Score: 76
Period size: 17 Copynumber: 3.8 Consensus size: 17
1584930 CAAACCCATT
1584940 TTAAATTTATTTTAAGA
1 TTAAATTTATTTTAAGA
*
1584957 TTAAATTTGTTTTAA-A
1 TTAAATTTATTTTAAGA
* * *
1584973 TTTAAATTTAATTTGAGT
1 -TTAAATTTATTTTAAGA
1584991 TTAAATTTATTTT
1 TTAAATTTATTTT
1585004 CAAATTTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
16 1 0.03
17 38 0.97
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (17 bp):
TTAAATTTATTTTAAGA
Found at i:1584977 original size:34 final size:35
Alignment explanation
Indices: 1584939--1585019 Score: 110
Period size: 34 Copynumber: 2.3 Consensus size: 35
1584929 CCAAACCCAT
*
1584939 TTTAAATTTATTTTAAGATTAAATTTGTTTT-AAA
1 TTTAAATTTATTTTAAGATTAAATTTATTTTCAAA
* * *
1584973 TTTAAATTTAATTTGAGTTTAAATTTATTTTCAAA
1 TTTAAATTTATTTTAAGATTAAATTTATTTTCAAA
*
1585008 TTTAAAATTATT
1 TTTAAATTTATT
1585020 ATAAATTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 27 0.68
35 13 0.32
ACGTcount: A:0.38, C:0.01, G:0.05, T:0.56
Consensus pattern (35 bp):
TTTAAATTTATTTTAAGATTAAATTTATTTTCAAA
Found at i:1585027 original size:17 final size:18
Alignment explanation
Indices: 1584990--1585029 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
1584980 TTAATTTGAG
* *
1584990 TTTAAATTTATTTTCAAA
1 TTTAAAATTATTATCAAA
1585008 TTTAAAATTATTAT-AAA
1 TTTAAAATTATTATCAAA
1585025 TTTAA
1 TTTAA
1585030 TTAAAATGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTAAAATTATTATCAAA
Found at i:1585052 original size:14 final size:15
Alignment explanation
Indices: 1585028--1585064 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1585018 TTATAAATTT
*
1585028 AATTA-AAATGTC-C
1 AATTACAAATGTCTA
1585041 AATTACAAATGTCTA
1 AATTACAAATGTCTA
1585056 AATTACAAA
1 AATTACAAA
1585065 GGCCAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 5 0.24
14 7 0.33
15 9 0.43
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.30
Consensus pattern (15 bp):
AATTACAAATGTCTA
Found at i:1586369 original size:23 final size:24
Alignment explanation
Indices: 1586313--1586372 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
1586303 TTATTAACAT
*
1586313 TGTTCGTGAACGTGTTCAATTATA
1 TGTTCGTGAACATGTTCAATTATA
* **
1586337 TGTTCATGAACATGTTCGTTTA-A
1 TGTTCGTGAACATGTTCAATTATA
1586360 TGTTCGTGAACAT
1 TGTTCGTGAACAT
1586373 TAAACAAATG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
23 13 0.42
24 18 0.58
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (24 bp):
TGTTCGTGAACATGTTCAATTATA
Found at i:1588709 original size:9 final size:9
Alignment explanation
Indices: 1588695--1588724 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
1588685 TCATAATTTA
1588695 AAAAATAAT
1 AAAAATAAT
1588704 AAAAATAAT
1 AAAAATAAT
*
1588713 AAAATTAAT
1 AAAAATAAT
1588722 AAA
1 AAA
1588725 GATTCTGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATAAT
Found at i:1593031 original size:21 final size:21
Alignment explanation
Indices: 1593006--1593046 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1592996 TAAAATAAAA
1593006 TAATAAT-AGTAATAACAACAT
1 TAATAATGA-TAATAACAACAT
*
1593027 TAATAATGATAATGACAACA
1 TAATAATGATAATAACAACA
1593047 ATGACAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (21 bp):
TAATAATGATAATAACAACAT
Found at i:1593543 original size:24 final size:23
Alignment explanation
Indices: 1593499--1593543 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
1593489 TTCAGAAACA
* *
1593499 ATTAATTTTATTTAAATTTTAAG
1 ATTAAATTTATTTAAAGTTTAAG
1593522 ATTAAATTTATTTAAAGGTTTA
1 ATTAAATTTATTTAAA-GTTTA
1593544 TCTTTAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
ATTAAATTTATTTAAAGTTTAAG
Found at i:1596280 original size:28 final size:29
Alignment explanation
Indices: 1596248--1596304 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
1596238 AAAACAAACG
1596248 GGGTT-AAAAT-TAGAGTTTCAAAGAATTT
1 GGGTTGAAAATGTA-AGTTTCAAAGAATTT
* *
1596276 GGGTTGAAAATGTAATTTTCAAGGAATTT
1 GGGTTGAAAATGTAAGTTTCAAAGAATTT
1596305 AGGGATCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.20
29 18 0.72
30 2 0.08
ACGTcount: A:0.37, C:0.04, G:0.23, T:0.37
Consensus pattern (29 bp):
GGGTTGAAAATGTAAGTTTCAAAGAATTT
Found at i:1596356 original size:29 final size:30
Alignment explanation
Indices: 1596300--1596373 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 30
1596290 ATTTTCAAGG
1596300 AATTTAGGGATCAAAATCAAAAATTTTGGAA
1 AATTT-GGGATCAAAATCAAAAATTTTGGAA
* * *
1596331 AATTTGGGATTAAAATC-TAACTTTTGGAA
1 AATTTGGGATCAAAATCAAAAATTTTGGAA
1596360 AATTTGGG-TCAAAA
1 AATTTGGGATCAAAA
1596374 ATGTGATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 5 0.13
29 18 0.46
30 11 0.28
31 5 0.13
ACGTcount: A:0.43, C:0.07, G:0.18, T:0.32
Consensus pattern (30 bp):
AATTTGGGATCAAAATCAAAAATTTTGGAA
Found at i:1596415 original size:57 final size:55
Alignment explanation
Indices: 1596352--1596517 Score: 138
Period size: 57 Copynumber: 2.9 Consensus size: 55
1596342 AAAATCTAAC
*
1596352 TTTTGGAAAATTTGGGTCAAAAATGTGATTTTTGGATGTTCGGGGATAAAATGGTAA
1 TTTTGGAAAATTTGGGT-AAAAATGTGATTTTTGGATGTTCGGGGATAAAAT-GCAA
** * * *
1596409 TTTTGG-ATGTTTGGGGACAAAATGGTGATTTTTAGATGATCGGGGGCA-AAAATGCAA
1 TTTTGGAAAATTTGGGTA-AAAAT-GTGATTTTTGGATGTTC-GGGG-ATAAAATGCAA
* * * * * *
1596466 TTTTTGAAAAGTTTGGGATGAAAATATGATTTTTGGACGTTTGGGGGTAAAA
1 TTTTGGAAAA-TTTGGG-TAAAAATGTGATTTTTGGATGTTCGGGGATAAAA
1596518 ATGTGATTTT
Statistics
Matches: 84, Mismatches: 17, Indels: 16
0.72 0.15 0.14
Matches are distributed among these distances:
55 1 0.01
56 12 0.14
57 37 0.44
58 22 0.26
59 12 0.14
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.36
Consensus pattern (55 bp):
TTTTGGAAAATTTGGGTAAAAATGTGATTTTTGGATGTTCGGGGATAAAATGCAA
Found at i:1596536 original size:29 final size:29
Alignment explanation
Indices: 1596365--1596604 Score: 125
Period size: 29 Copynumber: 8.3 Consensus size: 29
1596355 TGGAAAATTT
* *
1596365 GGGTCAAAAATGTGATTTTTGGATGTTCGG
1 GGGT-AAAAATGTGATTTTTGGAAGTTTGG
* * *
1596395 GGAT-AAAATG-GTAATTTTGGATGTTT-G
1 GGGTAAAAATGTG-ATTTTTGGAAGTTTGG
* * * *
1596422 GGG-ACAAAATGGTGATTTTTAGATGATCGG
1 GGGTA-AAAAT-GTGATTTTTGGAAGTTTGG
* ** *
1596452 GGGCAAAAATGCAATTTTTGAAAAGTTT-G
1 GGGTAAAAATGTGATTTTTG-GAAGTTTGG
* * * *
1596481 GGATGAAAATATGATTTTTGGACGTTTGG
1 GGGTAAAAATGTGATTTTTGGAAGTTTGG
*
1596510 GGGTAAAAATGTGATTTTTGGAAGTTTGA
1 GGGTAAAAATGTGATTTTTGGAAGTTTGG
* ** * * *
1596539 GGGT--AAATGTAATTTGGGAGAAATTCGA
1 GGGTAAAAATGTGATTTTTG-GAAGTTTGG
* * *
1596567 GGGTGAAAATGTAATTTTTGAGAAGTTTAG
1 GGGTAAAAATGTGATTTTTG-GAAGTTTGG
1596597 GGGTAAAA
1 GGGTAAAA
1596605 TATAATTTTA
Statistics
Matches: 158, Mismatches: 40, Indels: 24
0.71 0.18 0.11
Matches are distributed among these distances:
27 15 0.09
28 39 0.25
29 62 0.39
30 41 0.26
31 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.31, T:0.34
Consensus pattern (29 bp):
GGGTAAAAATGTGATTTTTGGAAGTTTGG
Found at i:1596610 original size:29 final size:29
Alignment explanation
Indices: 1596464--1596701 Score: 175
Period size: 29 Copynumber: 8.3 Consensus size: 29
1596454 GCAAAAATGC
* *
1596464 AATTTTTGAAAAGTTTGGGATGAAAATAT
1 AATTTTTGAGAAGTTTGGGGTGAAAATAT
* * * *
1596493 GATTTTTG-GACGTTTGGGGGTAAAAATGT
1 AATTTTTGAGAAGTTT-GGGGTGAAAATAT
* *
1596522 GATTTTTG-GAAGTTTGAGGGT--AAATGT
1 AATTTTTGAGAAGTTTG-GGGTGAAAATAT
** * * *
1596549 AATTTGGGAGAAATTCGAGGGTGAAAATGT
1 AATTTTTGAGAAGTTTG-GGGTGAAAATAT
1596579 AATTTTTGAGAAGTTTAGGGGT-AAAATAT
1 AATTTTTGAGAAGTTT-GGGGTGAAAATAT
* * *
1596608 AATTTTAGAGAAATTTGAGGTGAAAATAT
1 AATTTTTGAGAAGTTTGGGGTGAAAATAT
* * *
1596637 AATTTTTAAGAAGTTTAGAGGTAAAAATAT
1 AATTTTTGAGAAGTTT-GGGGTGAAAATAT
* * *
1596667 AATTTTGGA-AAGTTT-GGGAGAAAACAT
1 AATTTTTGAGAAGTTTGGGGTGAAAATAT
*
1596694 GATTTTTG
1 AATTTTTG
1596702 TAAAGTTCGA
Statistics
Matches: 169, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
27 25 0.15
28 21 0.12
29 81 0.48
30 41 0.24
31 1 0.01
ACGTcount: A:0.37, C:0.01, G:0.26, T:0.36
Consensus pattern (29 bp):
AATTTTTGAGAAGTTTGGGGTGAAAATAT
Found at i:1597703 original size:15 final size:15
Alignment explanation
Indices: 1597683--1597716 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1597673 ATTTTCCTTT
1597683 TTTATTATTAATGTA
1 TTTATTATTAATGTA
* *
1597698 TTTATTATTTATTTA
1 TTTATTATTAATGTA
1597713 TTTA
1 TTTA
1597717 ATGTGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTATTATTAATGTA
Found at i:1598365 original size:6 final size:6
Alignment explanation
Indices: 1598354--1598419 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
1598344 ATTATTTATC
* *
1598354 TTAAAT TTAAA- -TAAAT TTAAAT TTAAAA GTAAAT TTAAA- -TAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
1598398 TTAAAT TTAAAA GTAAAT TTAA
1 TTAAAT TTAAAT TTAAAT TTAA
1598420 GAATAAGTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
4 8 0.17
6 40 0.83
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (6 bp):
TTAAAT
Found at i:1598370 original size:10 final size:10
Alignment explanation
Indices: 1598355--1598403 Score: 59
Period size: 10 Copynumber: 5.1 Consensus size: 10
1598345 TTATTTATCT
1598355 TAAATTTAAA
1 TAAATTTAAA
1598365 TAAATTTAAA
1 TAAATTTAAA
*
1598375 T---TTAAAA
1 TAAATTTAAA
1598382 GTAAATTTAAA
1 -TAAATTTAAA
1598393 TAAATTTAAA
1 TAAATTTAAA
1598403 T
1 T
1598404 TTAAAAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
7 5 0.15
8 1 0.03
10 22 0.67
11 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (10 bp):
TAAATTTAAA
Found at i:1598379 original size:22 final size:23
Alignment explanation
Indices: 1598354--1598419 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 23
1598344 ATTATTTATC
1598354 TTAAATTTAAA-TAAATTTAAAT
1 TTAAATTTAAATTAAATTTAAAT
**
1598376 TTAAAAGTAAATTTAAA--TAAAT
1 TTAAATTTAAA-TTAAATTTAAAT
*
1598398 TTAAATTTAAAAGTAAATTTAA
1 TTAAATTT-AAATTAAATTTAA
1598420 GAATAAGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
22 24 0.71
23 3 0.09
24 7 0.21
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (23 bp):
TTAAATTTAAATTAAATTTAAAT
Found at i:1598387 original size:28 final size:28
Alignment explanation
Indices: 1598355--1598419 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
1598345 TTATTTATCT
1598355 TAAATTTAAATAAATTTAAATTTAAAAG
1 TAAATTTAAATAAATTTAAATTTAAAAG
1598383 TAAATTTAAATAAATTTAAATTTAAAAG
1 TAAATTTAAATAAATTTAAATTTAAAAG
1598411 TAAATTTAA
1 TAAATTTAA
1598420 GAATAAGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (28 bp):
TAAATTTAAATAAATTTAAATTTAAAAG
Found at i:1598388 original size:18 final size:16
Alignment explanation
Indices: 1598354--1598419 Score: 77
Period size: 16 Copynumber: 4.2 Consensus size: 16
1598344 ATTATTTATC
1598354 TTAAATTTAAATAAAT
1 TTAAATTTAAATAAAT
1598370 TTAAATTT--A-AAA-
1 TTAAATTTAAATAAAT
*
1598382 GTAAATTTAAATAAAT
1 TTAAATTTAAATAAAT
1598398 TTAAATTTAAAAGTAAAT
1 TTAAATTT-AAA-TAAAT
1598416 TTAA
1 TTAA
1598420 GAATAAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
12 7 0.17
13 3 0.07
14 2 0.05
15 3 0.07
16 15 0.36
17 3 0.07
18 9 0.21
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (16 bp):
TTAAATTTAAATAAAT
Found at i:1611973 original size:31 final size:31
Alignment explanation
Indices: 1611926--1611998 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
1611916 GCCCAATAAA
* * *
1611926 TTAAATTAAAACTTTTAAATAATTCAATGAC
1 TTAAATAAAAAATTTTAAAAAATTCAATGAC
* *
1611957 TTAAATAAAAAATTTTAAAAAATTTAGTGAC
1 TTAAATAAAAAATTTTAAAAAATTCAATGAC
*
1611988 TAAAATAAAAA
1 TTAAATAAAAA
1611999 TCACTCGCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.34
Consensus pattern (31 bp):
TTAAATAAAAAATTTTAAAAAATTCAATGAC
Found at i:1617862 original size:25 final size:25
Alignment explanation
Indices: 1617808--1617868 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
1617798 ATCATTATAT
*
1617808 TGAATTAT-TTAAATATTTCAATTA
1 TGAATTATATTAAATATTTCAAATA
*
1617832 T-CATTATATTAAATTATTT-AAATA
1 TGAATTATATTAAA-TATTTCAAATA
1617856 TGAATTATTATTA
1 TGAATTA-TATTA
1617869 TTATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
23 5 0.17
24 11 0.37
25 9 0.30
26 5 0.17
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (25 bp):
TGAATTATATTAAATATTTCAAATA
Found at i:1629467 original size:20 final size:21
Alignment explanation
Indices: 1629426--1629469 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
1629416 CTAAAAAAAT
1629426 TATTTGAAAATAAAATACTTTA
1 TATTTGAAAATAAAATA-TTTA
1629448 TATTTGAAAA-AATAAT-TTTA
1 TATTTGAAAATAA-AATATTTA
1629468 TA
1 TA
1629470 AATTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 13 0.62
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (21 bp):
TATTTGAAAATAAAATATTTA
Found at i:1631065 original size:15 final size:15
Alignment explanation
Indices: 1631045--1631075 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1631035 AAAATACAAA
1631045 TATTCAATCCGTTGT
1 TATTCAATCCGTTGT
1631060 TATTCAATCCGTTGT
1 TATTCAATCCGTTGT
1631075 T
1 T
1631076 GTTGCTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (15 bp):
TATTCAATCCGTTGT
Found at i:1650342 original size:2 final size:2
Alignment explanation
Indices: 1650335--1650377 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
1650325 GCAAAGGATT
1650335 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T- TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1650376 TC
1 TC
1650378 ATCCTCTCCT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:1655394 original size:17 final size:17
Alignment explanation
Indices: 1655368--1655450 Score: 94
Period size: 17 Copynumber: 4.9 Consensus size: 17
1655358 AACCATTTTG
* *
1655368 AATTTGTTTTAAAATTA
1 AATTTATTTTAAATTTA
*
1655385 AATTTATTTTAATTTTA
1 AATTTATTTTAAATTTA
* *
1655402 AATTTAATTTAAATTTG
1 AATTTATTTTAAATTTA
* *
1655419 GATTTAATTTAAATTTA
1 AATTTATTTTAAATTTA
*
1655436 AATTTATTATAAATT
1 AATTTATTTTAAATT
1655451 CAGAGTCCAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 55 1.00
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (17 bp):
AATTTATTTTAAATTTA
Found at i:1655396 original size:11 final size:12
Alignment explanation
Indices: 1655390--1655440 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
1655380 AATTAAATTT
*
1655390 ATTTTAATTTTAA
1 ATTTGAATT-TAA
1655403 ATTT-AATTTAA
1 ATTTGAATTTAA
*
1655414 ATTTGGATTT-A
1 ATTTGAATTTAA
*
1655425 ATTTAAATTTAA
1 ATTTGAATTTAA
1655437 ATTT
1 ATTT
1655441 ATTATAAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
11 16 0.48
12 13 0.39
13 4 0.12
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (12 bp):
ATTTGAATTTAA
Found at i:1655441 original size:6 final size:6
Alignment explanation
Indices: 1655375--1655441 Score: 68
Period size: 6 Copynumber: 11.7 Consensus size: 6
1655365 TTGAATTTGT
* * * **
1655375 TTTAAA ATTAAA TTT-AT TTTAAT TTTAAA TTT-AA TTTAAA TTTGGA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
1655421 TTT-AA TTTAAA TTTAAA TTTA
1 TTTAAA TTTAAA TTTAAA TTTA
1655442 TTATAAATTC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 13 0.25
6 38 0.75
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (6 bp):
TTTAAA
Found at i:1657150 original size:161 final size:162
Alignment explanation
Indices: 1656966--1657284 Score: 523
Period size: 162 Copynumber: 2.0 Consensus size: 162
1656956 AGCTTTCAAT
*
1656966 TTAGTCCTTTGACTGTTTGACTGTACCAGAGGCTGCCACGTGTCA-TTTTTTGATTATTCCTGCA
1 TTAGTCCTTTGACTGTTTGACTGTACCAGAGACTGCCACGTGTCATTTTTTTGATTATTCCTGCA
* * ** *
1657030 TTTAGTCCCTAACATTTTTAATTTATTTTAATTTGATCCCCAAATAAATTTTATTTTAATTACGA
66 TTTAGTCCCTAACATTTTTAAGTTATTTTAATTTAATCCCCAAATAAACCTTATTTTAATTACAA
*
1657095 AATTGGCCCAAGAATTTTTCAAGGTTTATAAA
131 AATTGGCCCAAGAATTTTTCAAGATTTATAAA
*
1657127 TTAGTCCTTTGACTGTTTGACTGTACCAGAGACTGCCACGTGTCATTTTTTTGATTATTTCTGCA
1 TTAGTCCTTTGACTGTTTGACTGTACCAGAGACTGCCACGTGTCATTTTTTTGATTATTCCTGCA
* * * *
1657192 TTTAGTCCCTGATATTTTTAAGTTGTTTTAATTTAATCCCCAAATCAACCTTATTTTAATTACAA
66 TTTAGTCCCTAACATTTTTAAGTTATTTTAATTTAATCCCCAAATAAACCTTATTTTAATTACAA
1657257 AATTGGCCCAAGAATTTTTCAAGATTTA
131 AATTGGCCCAAGAATTTTTCAAGATTTA
1657285 CAATTTAATC
Statistics
Matches: 145, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
161 44 0.30
162 101 0.70
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (162 bp):
TTAGTCCTTTGACTGTTTGACTGTACCAGAGACTGCCACGTGTCATTTTTTTGATTATTCCTGCA
TTTAGTCCCTAACATTTTTAAGTTATTTTAATTTAATCCCCAAATAAACCTTATTTTAATTACAA
AATTGGCCCAAGAATTTTTCAAGATTTATAAA
Found at i:1657413 original size:30 final size:30
Alignment explanation
Indices: 1657372--1657462 Score: 164
Period size: 30 Copynumber: 3.0 Consensus size: 30
1657362 CCCCAAACAA
1657372 TCCAGAAATTATATTTTGACCCCAAAACTTT
1 TCCA-AAATTATATTTTGACCCCAAAACTTT
1657403 TCCAAAATTATATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
*
1657433 TCCAAAATTACATTTTGACCCCAAAACTTT
1 TCCAAAATTATATTTTGACCCCAAAACTTT
1657463 CCTAAATCCC
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 55 0.93
31 4 0.07
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.35
Consensus pattern (30 bp):
TCCAAAATTATATTTTGACCCCAAAACTTT
Found at i:1657484 original size:30 final size:30
Alignment explanation
Indices: 1657385--1657544 Score: 109
Period size: 30 Copynumber: 5.3 Consensus size: 30
1657375 AGAAATTATA
* *
1657385 TTTTGACCCCAAAACTTTTCCAAAAT--TAT
1 TTTTAACCCCAAAAC-TTTCCAAAATCCCAT
* **
1657414 ATTTTGACCCCAAAACTTTTCCAAAATTACA-
1 -TTTTAACCCCAAAAC-TTTCCAAAATCCCAT
* *
1657445 TTTTGACCCCAAAACTTTCCTAAATCCCAT
1 TTTTAACCCCAAAACTTTCCAAAATCCCAT
* *
1657475 TTTTAACCCC--GA-TTTCACCAAAAATTACCA-
1 TTTTAACCCCAAAACTTT--CC-AAAA-TCCCAT
* *
1657505 TTTTACCCCCAAAACTTTCCTAAATCCCAT
1 TTTTAACCCCAAAACTTTCCAAAATCCCAT
1657535 TTTTAACCCC
1 TTTTAACCCC
1657545 GATTTCACCA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
27 3 0.03
28 1 0.01
29 17 0.16
30 74 0.70
31 6 0.06
32 2 0.02
33 3 0.03
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.34
Consensus pattern (30 bp):
TTTTAACCCCAAAACTTTCCAAAATCCCAT
Found at i:1657513 original size:59 final size:60
Alignment explanation
Indices: 1657436--1657812 Score: 495
Period size: 60 Copynumber: 6.4 Consensus size: 60
1657426 AAACTTTTCC
*
1657436 AAAATTA-CATTTTGA-CCCCAAAACTTTCCT-AAATCCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTT-ACCCCCGAAACTTT-CTAAAATCCCATTTTTAACCCCGATTTCACCA
*
1657495 AAAATTACCATTTTACCCCCAAAACTTTCCT-AAATCCCATTTTTAACCCCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAAACTTT-CTAAAATCCCATTTTTAACCCCGATTTCACCA
* * * *
1657555 AAATTTACCATTTTACCCCCGAAGC-TTCTAAAATTCCATTTTTAACCCTGATTTCACCA
1 AAAATTACCATTTTACCCCCGAAACTTTCTAAAATCCCATTTTTAACCCCGATTTCACCA
*
1657614 AAAATTACCATTTTACCCCCGAAACTTTCCT-AAATCCCATTTTTAACCTCGATTTCACCA
1 AAAATTACCATTTTACCCCCGAAACTTT-CTAAAATCCCATTTTTAACCCCGATTTCACCA
* * * * *
1657674 AAATTTACCATTTTACCCTCGAAGC-TTCTAAAATTCCATTTTTAACCACGATTTCACCA
1 AAAATTACCATTTTACCCCCGAAACTTTCTAAAATCCCATTTTTAACCCCGATTTCACCA
* * *
1657733 AAAATTACCATTTTACCCCCGAATCTTT-TAAAATTCCA-TTTTAACCTCGATTTCACC-
1 AAAATTACCATTTTACCCCCGAAACTTTCTAAAATCCCATTTTTAACCCCGATTTCACCA
*
1657790 AAAATTACCATTTTGGCCCCCGA
1 AAAATTACCATTTT-ACCCCCGA
1657813 GTATCCATAA
Statistics
Matches: 290, Mismatches: 20, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
57 14 0.05
58 29 0.10
59 121 0.42
60 124 0.43
61 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (60 bp):
AAAATTACCATTTTACCCCCGAAACTTTCTAAAATCCCATTTTTAACCCCGATTTCACCA
Found at i:1657594 original size:119 final size:119
Alignment explanation
Indices: 1657466--1657812 Score: 567
Period size: 119 Copynumber: 2.9 Consensus size: 119
1657456 AAACTTTCCT
* *
1657466 AAATCCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCAAAACTTTCCTAAATC
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAACTTTCCTAAATC
*
1657531 CCATTTTTAACCCCGATTTCACCAAAATTTACCATTTTACCCCCGAAGCTTCTA
66 CCATTTTTAACCTCGATTTCACCAAAATTTACCATTTTACCCCCGAAGCTTCTA
*
1657585 AAATTCCATTTTTAACCCTGATTTCACCAAAAATTACCATTTTACCCCCGAAACTTTCCTAAATC
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAACTTTCCTAAATC
*
1657650 CCATTTTTAACCTCGATTTCACCAAAATTTACCATTTTACCCTCGAAGCTTCTA
66 CCATTTTTAACCTCGATTTCACCAAAATTTACCATTTTACCCCCGAAGCTTCTA
* *
1657704 AAATTCCATTTTTAACCACGATTTCACCAAAAATTACCATTTTACCCCCGAATCTTT--TAAAAT
1 AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAACTTTCCT-AAAT
* *
1657767 TCCA-TTTTAACCTCGATTTCACCAAAA-TTACCATTTTGGCCCCCGA
65 CCCATTTTTAACCTCGATTTCACCAAAATTTACCATTTT-ACCCCCGA
1657813 GTATCCATAA
Statistics
Matches: 215, Mismatches: 11, Indels: 6
0.93 0.05 0.03
Matches are distributed among these distances:
116 10 0.05
117 30 0.14
118 7 0.03
119 168 0.78
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (119 bp):
AAATTCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTACCCCCGAAACTTTCCTAAATC
CCATTTTTAACCTCGATTTCACCAAAATTTACCATTTTACCCCCGAAGCTTCTA
Found at i:1663922 original size:57 final size:58
Alignment explanation
Indices: 1663851--1663959 Score: 175
Period size: 58 Copynumber: 1.9 Consensus size: 58
1663841 TTAATATAAT
*
1663851 ATTTGGTACTTGAACTTGAC-TTTTTCCTAATTTGGTACCTAAACTTTTTTTAACCAA
1 ATTTGGTACCTGAACTTGACATTTTTCCTAATTTGGTACCTAAACTTTTTTTAACCAA
* * *
1663908 ATTTGGTACCTGAACTTGGCATTTTTCTTAATTTGGTACCTAAGCTTTTTTT
1 ATTTGGTACCTGAACTTGACATTTTTCCTAATTTGGTACCTAAACTTTTTTT
1663960 TACATTCAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 18 0.38
58 29 0.62
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.48
Consensus pattern (58 bp):
ATTTGGTACCTGAACTTGACATTTTTCCTAATTTGGTACCTAAACTTTTTTTAACCAA
Found at i:1664218 original size:30 final size:31
Alignment explanation
Indices: 1664182--1664270 Score: 108
Period size: 31 Copynumber: 2.9 Consensus size: 31
1664172 GGATCCCAAA
* * *
1664182 AAGTTTAAGTGCCAACTTA-AAAAAAATATC
1 AAGTTTAAGTACCAAATTAGAAAAAAACATC
* * *
1664212 AAGTTTAGGTACCAAATTAGAAAAAAGCGTC
1 AAGTTTAAGTACCAAATTAGAAAAAAACATC
1664243 AAGTTTAAGTACCAAATTAGACAAAAAA
1 AAGTTTAAGTACCAAATTAGA-AAAAAA
1664271 AATTTCAAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
30 16 0.33
31 28 0.57
32 5 0.10
ACGTcount: A:0.51, C:0.12, G:0.13, T:0.24
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAGAAAAAAACATC
Found at i:1671289 original size:31 final size:31
Alignment explanation
Indices: 1671254--1671312 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
1671244 ACCCTAAATA
1671254 AAAGTGTAATTGTATCTTTCAATAATAAGTG
1 AAAGTGTAATTGTATCTTTCAATAATAAGTG
* * *
1671285 AAAGTGTAGTTGTTTCTTTGAATAATAA
1 AAAGTGTAATTGTATCTTTCAATAATAA
1671313 TAAATGAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.05, G:0.17, T:0.41
Consensus pattern (31 bp):
AAAGTGTAATTGTATCTTTCAATAATAAGTG
Found at i:1672553 original size:18 final size:18
Alignment explanation
Indices: 1672530--1672570 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
1672520 TTGAGGCTTG
1672530 CAAGCGTCGAAAGCTCAA
1 CAAGCGTCGAAAGCTCAA
1672548 CAAGCGTCGAAAGCTCAA
1 CAAGCGTCGAAAGCTCAA
1672566 CAAGC
1 CAAGC
1672571 TTGGGCATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.29, G:0.22, T:0.10
Consensus pattern (18 bp):
CAAGCGTCGAAAGCTCAA
Found at i:1683213 original size:15 final size:15
Alignment explanation
Indices: 1683193--1683231 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
1683183 GCACATCAAA
*
1683193 CAAGAATTAATATAT
1 CAAGAATTAATAAAT
*
1683208 CAAGAA-TACTAAAT
1 CAAGAATTAATAAAT
1683222 CAAGAATTAA
1 CAAGAATTAA
1683232 GCACACATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.56, C:0.10, G:0.08, T:0.26
Consensus pattern (15 bp):
CAAGAATTAATAAAT
Found at i:1683639 original size:25 final size:23
Alignment explanation
Indices: 1683611--1683656 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
1683601 GTTGAATCCA
1683611 AATTAAATTCTAAAAAGATAATTTG
1 AATTAAA-TCTAAAAA-ATAATTTG
*
1683636 AATTAAATCTAAACAATAATT
1 AATTAAATCTAAAAAATAATT
1683657 CCCTAATTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (23 bp):
AATTAAATCTAAAAAATAATTTG
Found at i:1683743 original size:13 final size:13
Alignment explanation
Indices: 1683722--1683755 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
1683712 ATATAATAAT
1683722 AATAATAATCCTA
1 AATAATAATCCTA
*
1683735 AATATTAATCCTA
1 AATAATAATCCTA
*
1683748 AAAAATAA
1 AATAATAA
1683756 AGTTTAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAATAATCCTA
Found at i:1686702 original size:15 final size:15
Alignment explanation
Indices: 1686682--1686712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1686672 AACATCTTAT
*
1686682 TCTAATTAGAATAAA
1 TCTAATTAAAATAAA
1686697 TCTAATTAAAATAAA
1 TCTAATTAAAATAAA
1686712 T
1 T
1686713 AGATGATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (15 bp):
TCTAATTAAAATAAA
Found at i:1690944 original size:43 final size:43
Alignment explanation
Indices: 1690849--1690957 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
1690839 TGGTGAGATC
* * * ** *
1690849 GACATTGAGGAGTGAGTGGGAAGGGAGCGATGGTGGGGGCTGG
1 GACAATGAGGAGTGAGAGGGAAGGGAGCAATGGTAAGGGCTAG
*** *
1690892 GATGGTGAGGAGTGAGAGGGAAGGGAGCAATGGTAAGGGTTAG
1 GACAATGAGGAGTGAGAGGGAAGGGAGCAATGGTAAGGGCTAG
1690935 GACAATGAGGAGTGAGAGGGAAG
1 GACAATGAGGAGTGAGAGGGAAG
1690958 TGGTGGGGGT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.28, C:0.05, G:0.52, T:0.15
Consensus pattern (43 bp):
GACAATGAGGAGTGAGAGGGAAGGGAGCAATGGTAAGGGCTAG
Found at i:1694242 original size:42 final size:43
Alignment explanation
Indices: 1694182--1694284 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
1694172 AGATCGACAT
** * * * * *
1694182 TGAGGAGTGAGTGAGAAGGGACCGATGGTGGGGGCTGGGATGG
1 TGAGGAGTGAAAGGGAAGGGACCGACGGTAGGGGCTAGGATAG
*
1694225 TGAGG-GTGAAAGGGAAGGGAGCGACGGTAGGGGCTAGGATAG
1 TGAGGAGTGAAAGGGAAGGGACCGACGGTAGGGGCTAGGATAG
*
1694267 TGAGGAGTGAGAGGGAAG
1 TGAGGAGTGAAAGGGAAG
1694285 TGGTGGGGGT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 34 0.68
43 16 0.32
ACGTcount: A:0.26, C:0.06, G:0.54, T:0.14
Consensus pattern (43 bp):
TGAGGAGTGAAAGGGAAGGGACCGACGGTAGGGGCTAGGATAG
Found at i:1694990 original size:25 final size:25
Alignment explanation
Indices: 1694957--1695011 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
1694947 ACGTATTTCA
*
1694957 ATTTGGTCCCATTCATTATTTATTT
1 ATTTAGTCCCATTCATTATTTATTT
1694982 ATTTAGTCCCATTCATTATTTATTT
1 ATTTAGTCCCATTCATTATTTATTT
1695007 ATTTA
1 ATTTA
1695012 TTTTAATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.05, T:0.56
Consensus pattern (25 bp):
ATTTAGTCCCATTCATTATTTATTT
Found at i:1698012 original size:58 final size:56
Alignment explanation
Indices: 1697943--1698312 Score: 393
Period size: 59 Copynumber: 6.4 Consensus size: 56
1697933 TTTGGACACC
* * * * *
1697943 CGGGGGCAAAATGGTCATTTTGGTTGAAATCAGGGTT-AAAATGAAATTTTTGAGGTTT
1 CGGGGGTAAAATGGTAATTTTGG-TGAAATC-GGGTTAAAAATGGAATTTTGGAAG-TT
* * * * **
1698001 TGGGGGTAAAATGATAATTTTGGTGGAATCGGGGTAAAAACAGAATTTTGGGAAGTT
1 CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGTTAAAAATGGAATTTT-GGAAGTT
* *
1698058 CGGGGGCAAAATGG-AATTTTTTGGTGAAATCATGGTTAAAAATGGAATTTTGGAAGTT
1 CGGGGGTAAAATGGTAA--TTTTGGTGAAATC-GGGTTAAAAATGGAATTTTGGAAGTT
**
1698116 CGATGGTAAAATGGTAATTTTAGGTGAAATCGGTGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAATTTT-GGTGAAATCGG-GTTAAAAATGGAATTTTGG-AAGTT
* *
1698175 CGGGGGTAAAATGGTAATTTTTGATGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAATCG-GGTTAAAAATGGAATTTTGG-AAGTT
* * *
1698234 CGAGGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAATT
1 CGGGGGTAAAATGGTAA-TTTTGGTGAAATCG-GGTTAAAAATGGAATTTTGG-AAGTT
*
1698293 CGAGGGTAAAATGGTAATTT
1 CGGGGGTAAAATGGTAATTT
1698313 CTTGAAATTT
Statistics
Matches: 271, Mismatches: 30, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
56 6 0.02
57 34 0.13
58 83 0.31
59 143 0.53
60 5 0.02
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (56 bp):
CGGGGGTAAAATGGTAATTTTGGTGAAATCGGGTTAAAAATGGAATTTTGGAAGTT
Found at i:1698034 original size:29 final size:29
Alignment explanation
Indices: 1697943--1698039 Score: 72
Period size: 28 Copynumber: 3.4 Consensus size: 29
1697933 TTTGGACACC
* * * *
1697943 CGGGGGCAAAATGGTCATTTTGGTTGAAAT
1 CGGGGGTAAAATGATAATTTTGG-TGGAAT
* * * * **
1697973 CAGGGTTAAAATGA-AATTTTTGAGGTTT
1 CGGGGGTAAAATGATAATTTTGGTGGAAT
*
1698001 TGGGGGTAAAATGATAATTTTGGTGGAAT
1 CGGGGGTAAAATGATAATTTTGGTGGAAT
1698030 C-GGGGTAAAA
1 CGGGGGTAAAA
1698040 ACAGAATTTT
Statistics
Matches: 48, Mismatches: 18, Indels: 4
0.69 0.26 0.06
Matches are distributed among these distances:
28 22 0.46
29 16 0.33
30 10 0.21
ACGTcount: A:0.31, C:0.05, G:0.32, T:0.32
Consensus pattern (29 bp):
CGGGGGTAAAATGATAATTTTGGTGGAAT
Found at i:1698078 original size:29 final size:29
Alignment explanation
Indices: 1698029--1698256 Score: 85
Period size: 28 Copynumber: 7.8 Consensus size: 29
1698019 TTTGGTGGAA
* **
1698029 TCGGGGTAAAAACAGAA-TTTTGGGAAGT
1 TCGGGGGAAAAATGGAATTTTTGGGAAGT
* *
1698057 TCGGGGGCAAAATGGAATTTTTTGGTGAA-A
1 TCGGGGGAAAAATGGAA-TTTTTGG-GAAGT
* **
1698087 TCATGGTTAAAAATGGAA-TTTT-GGAAGT
1 TC-GGGGGAAAAATGGAATTTTTGGGAAGT
** * * *
1698115 TCGATGGTAAAATGGTAATTTTAGGTGAA-A
1 TCGGGGGAAAAATGG-AATTTTTGG-GAAGT
** *
1698145 TCGGTGTTAAAAATGGAA-TTTTGGAAAGT
1 TCGG-GGGAAAAATGGAATTTTTGGGAAGT
* * *
1698174 TCGGGGGTAAAATGGTAATTTTTGATGAA-A
1 TCGGGGGAAAAATGG-AATTTTTG-GGAAGT
* ** *
1698204 CCGAGGTTAAAAATGGAA-TTTTGGAAAGT
1 TCG-GGGGAAAAATGGAATTTTTGGGAAGT
* *
1698233 TCGAGGGTAAAATGGTAATTTTTG
1 TCGGGGGAAAAATGG-AATTTTTG
1698257 ATGAAATCGA
Statistics
Matches: 138, Mismatches: 44, Indels: 34
0.64 0.20 0.16
Matches are distributed among these distances:
27 10 0.07
28 38 0.28
29 27 0.20
30 28 0.20
31 35 0.25
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (29 bp):
TCGGGGGAAAAATGGAATTTTTGGGAAGT
Found at i:1698106 original size:59 final size:59
Alignment explanation
Indices: 1698004--1698317 Score: 406
Period size: 59 Copynumber: 5.4 Consensus size: 59
1697994 GAGGTTTTGG
* * * * ** * *
1698004 GGGTAAAATGATAA-TTTTGGTGGAATCG-GGGTAAAAACAGAATTTTGGGAAGTTCGG
1 GGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCGA
* *
1698061 GGGCAAAATGG-AATTTTTTGGTGAAATC-ATGGTTAAAAATGGAATTTTGG-AAGTTCGA
1 GGGTAAAATGGTAA-TTTTTGATGAAATCGA-GGTTAAAAATGGAATTTTGGAAAGTTCGA
* * * *
1698119 TGGTAAAATGGTAATTTTAGGTGAAATCG-GTGTTAAAAATGGAATTTTGGAAAGTTCGG
1 GGGTAAAATGGTAATTTTTGATGAAATCGAG-GTTAAAAATGGAATTTTGGAAAGTTCGA
*
1698178 GGGTAAAATGGTAATTTTTGATGAAACCGAGGTTAAAAATGGAATTTTGGAAAGTTCGA
1 GGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCGA
*
1698237 GGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAATTCGA
1 GGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCGA
1698296 GGGTAAAATGGTAATTTCTTGA
1 GGGTAAAATGGTAATTT-TTGA
1698318 AATTTTGGGG
Statistics
Matches: 229, Mismatches: 18, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
56 2 0.01
57 10 0.04
58 60 0.26
59 152 0.66
60 5 0.02
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.32
Consensus pattern (59 bp):
GGGTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAGTTCGA
Found at i:1698280 original size:118 final size:116
Alignment explanation
Indices: 1697943--1698317 Score: 434
Period size: 118 Copynumber: 3.2 Consensus size: 116
1697933 TTTGGACACC
* * * * * * * * * * *
1697943 CGGGGGCAAAATGGTCATTTTGGTTGAAATCAGGGTT-AAAATGAAATTTTTGAGGTTTTGGGGG
1 CGGGGGTAAAATGGTAATTTTTGATGAAACCATGGTTAAAAATGGAATTTTGGAAG-TTCGAGGG
* * * ** *
1698007 TAAAATGATAA-TTTTGGTGGAATCGGGGTAAAAACAGAATTTTGGGAAGTT
65 TAAAATGGTAATTTTTGGTGAAATCGGGTTAAAAATGGAATTTTGGAAAGTT
* * * *
1698058 CGGGGGCAAAATGG-AATTTTTTGGTGAAATCATGGTTAAAAATGGAATTTTGGAAGTTCGATGG
1 CGGGGGTAAAATGGTAA-TTTTTGATGAAACCATGGTTAAAAATGGAATTTTGGAAGTTCGAGGG
*
1698122 TAAAATGGTAATTTTAGGTGAAATCGGTGTTAAAAATGGAATTTTGGAAAGTT
65 TAAAATGGTAATTTTTGGTGAAATCGG-GTTAAAAATGGAATTTTGGAAAGTT
1698175 CGGGGGTAAAATGGTAATTTTTGATGAAACCGA-GGTTAAAAATGGAATTTTGGAAAGTTCGAGG
1 CGGGGGTAAAATGGTAATTTTTGATGAAACC-ATGGTTAAAAATGGAATTTTGG-AAGTTCGAGG
* *
1698239 GTAAAATGGTAATTTTTGATGAAATCGAGGTTAAAAATGGAATTTTGGAAAATT
64 GTAAAATGGTAATTTTTGGTGAAATCG-GGTTAAAAATGGAATTTTGGAAAGTT
*
1698293 CGAGGGTAAAATGGTAATTTCTTGA
1 CGGGGGTAAAATGGTAATTT-TTGA
1698318 AATTTTGGGG
Statistics
Matches: 226, Mismatches: 25, Indels: 14
0.85 0.09 0.05
Matches are distributed among these distances:
114 1 0.00
115 46 0.20
116 28 0.12
117 66 0.29
118 80 0.35
119 5 0.02
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (116 bp):
CGGGGGTAAAATGGTAATTTTTGATGAAACCATGGTTAAAAATGGAATTTTGGAAGTTCGAGGGT
AAAATGGTAATTTTTGGTGAAATCGGGTTAAAAATGGAATTTTGGAAAGTT
Found at i:1698295 original size:29 final size:29
Alignment explanation
Indices: 1698091--1698342 Score: 175
Period size: 30 Copynumber: 8.6 Consensus size: 29
1698081 GTGAAATCAT
*
1698091 GGTTAAAAATGG-AATTTTGG-AAGTTCGA
1 GGTT-AAAATGGTAATTTTGGAAAATTCGA
*
1698119 TGG-TAAAATGGTAATTTTAGGTGAAA-TCG-
1 -GGTTAAAATGGTAATTTT-GG-AAAATTCGA
* *
1698148 GTGTTAAAAATGG-AATTTTGGAAAGTTCGG
1 G-GTT-AAAATGGTAATTTTGGAAAATTCGA
* * *
1698178 GGGTAAAATGGTAATTTTTGATGAAA-CCGA
1 GGTTAAAATGGTAATTTTGGA--AAATTCGA
*
1698208 GGTTAAAAATGG-AATTTTGGAAAGTTCGA
1 GGTT-AAAATGGTAATTTTGGAAAATTCGA
* *
1698237 GGGTAAAATGGTAATTTTTGATGAAA-TCGA
1 GGTTAAAATGGTAATTTTGGA--AAATTCGA
1698267 GGTTAAAAATGG-AATTTTGGAAAATTCGA
1 GGTT-AAAATGGTAATTTTGGAAAATTCGA
* * * * *
1698296 GGGTAAAATGGTAATTTCTTGAAATTTTGG
1 GGTTAAAATGGTAATTT-TGGAAAATTCGA
1698326 GGTTAAAAT-GTAATTTT
1 GGTTAAAATGGTAATTTT
1698343 TGAACTATTT
Statistics
Matches: 179, Mismatches: 23, Indels: 43
0.73 0.09 0.18
Matches are distributed among these distances:
27 7 0.04
28 37 0.21
29 53 0.30
30 55 0.31
31 27 0.15
ACGTcount: A:0.36, C:0.04, G:0.27, T:0.34
Consensus pattern (29 bp):
GGTTAAAATGGTAATTTTGGAAAATTCGA
Found at i:1698335 original size:30 final size:29
Alignment explanation
Indices: 1698267--1698356 Score: 87
Period size: 29 Copynumber: 3.1 Consensus size: 29
1698257 ATGAAATCGA
* * *
1698267 GGTTAAAAATGGAATTTTGGAAA-ATTCGAG
1 GGTT-AAAATGTAATTTTTGAAATATTTG-G
1698297 GG-TAAAATGGTAATTTCTTGAAAT-TTTGG
1 GGTTAAAAT-GTAATTT-TTGAAATATTTGG
*
1698326 GGTTAAAATGTAATTTTTGAACTATTTGG
1 GGTTAAAATGTAATTTTTGAAATATTTGG
1698355 GG
1 GG
1698357 ACCTATAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
28 11 0.22
29 24 0.47
30 16 0.31
ACGTcount: A:0.33, C:0.03, G:0.26, T:0.38
Consensus pattern (29 bp):
GGTTAAAATGTAATTTTTGAAATATTTGG
Found at i:1698619 original size:162 final size:162
Alignment explanation
Indices: 1698416--1698749 Score: 526
Period size: 162 Copynumber: 2.1 Consensus size: 162
1698406 GGCACCCAGA
* * *
1698416 AGTCAAGGGACGAATTTGTAAATCTTAAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTT
1 AGTCAAAGGACGAATTTATAAACCTTAAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTT
* ***
1698481 GATTTTGGGATTAAATTAAAACAAATAAAAAATGTCAGGGACTAAATGCATAAATAAACCAAAAA
66 AATTTTGGGATTAAATTAAAACAAATAAAAAATAAAAGGGACTAAATGCATAAATAAACCAAAAA
1698546 GTGACACGTGGCAGCTTCT-GGTGCAGTCAAAC
131 GTGACACGTGGCAGCTTCTAGG-GCAGTCAAAC
* * *
1698578 AGTCAAAGGACTAATTTATAAACCTTGAAAAATTCTTGGGCCAATTTTGTAATTAAATAAAAGTT
1 AGTCAAAGGACGAATTTATAAACCTTAAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTT
* * * *
1698643 AATTTTGGGATTAAATTAAAGCAAATTAAAAATAAAAGGGACTAAATGCATAAATAAGCCAAAAG
66 AATTTTGGGATTAAATTAAAACAAATAAAAAATAAAAGGGACTAAATGCATAAATAAACCAAAAA
1698708 GTGACACGTGGCAGCTTCTAGGGCAGTCAAAC
131 GTGACACGTGGCAGCTTCTAGGGCAGTCAAAC
1698740 AGTCAAAGGA
1 AGTCAAAGGA
1698750 TTAAATTGAA
Statistics
Matches: 157, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
162 155 0.99
163 2 0.01
ACGTcount: A:0.43, C:0.13, G:0.19, T:0.26
Consensus pattern (162 bp):
AGTCAAAGGACGAATTTATAAACCTTAAAAAATTCTTGGGCCAATTTCGTAATTAAATAAAAGTT
AATTTTGGGATTAAATTAAAACAAATAAAAAATAAAAGGGACTAAATGCATAAATAAACCAAAAA
GTGACACGTGGCAGCTTCTAGGGCAGTCAAAC
Found at i:1698646 original size:23 final size:23
Alignment explanation
Indices: 1698620--1698663 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1698610 TTCTTGGGCC
*
1698620 AATTTTGTAATTAAATAAAAGTT
1 AATTTTGGAATTAAATAAAAGTT
* *
1698643 AATTTTGGGATTAAATTAAAG
1 AATTTTGGAATTAAATAAAAG
1698664 CAAATTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (23 bp):
AATTTTGGAATTAAATAAAAGTT
Found at i:1698669 original size:23 final size:23
Alignment explanation
Indices: 1698620--1698669 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
1698610 TTCTTGGGCC
* **
1698620 AATTTTGTAATTAAATAAAAGTT
1 AATTTTGGAATTAAATAAAAGCA
* *
1698643 AATTTTGGGATTAAATTAAAGCA
1 AATTTTGGAATTAAATAAAAGCA
1698666 AATT
1 AATT
1698670 AAAAATAAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.40
Consensus pattern (23 bp):
AATTTTGGAATTAAATAAAAGCA
Found at i:1699562 original size:13 final size:13
Alignment explanation
Indices: 1699546--1699570 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1699536 TTTTTATTTT
1699546 TTATTAATTAATA
1 TTATTAATTAATA
1699559 TTATTAATTAAT
1 TTATTAATTAAT
1699571 GCTACTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTATTAATTAATA
Found at i:1700273 original size:28 final size:29
Alignment explanation
Indices: 1700220--1700276 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
1700210 GGGTTATTTT
1700220 AATTTGGGTTAATTGTAAAATTTGGGCTC
1 AATTTGGGTTAATTGTAAAATTTGGGCTC
*
1700249 AATTTGGGTT-ATTTTAAAATTTGGGCTC
1 AATTTGGGTTAATTGTAAAATTTGGGCTC
1700277 TTGTAATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (29 bp):
AATTTGGGTTAATTGTAAAATTTGGGCTC
Found at i:1700389 original size:17 final size:17
Alignment explanation
Indices: 1700369--1700441 Score: 82
Period size: 17 Copynumber: 4.5 Consensus size: 17
1700359 TTTTAATTTT
* *
1700369 AATTTAAACTTAAGGTA
1 AATTTAAATTTAAGATA
*
1700386 AATTTAAA--TAA-TTA
1 AATTTAAATTTAAGATA
1700400 AATTTAAATTTAAGATA
1 AATTTAAATTTAAGATA
1700417 AATTTAAATTTAA-ATAA
1 AATTTAAATTTAAGAT-A
1700434 AATTTAAA
1 AATTTAAA
1700442 ATCAATTTAA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
14 10 0.20
15 3 0.06
16 5 0.10
17 32 0.64
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (17 bp):
AATTTAAATTTAAGATA
Found at i:1700393 original size:6 final size:6
Alignment explanation
Indices: 1700352--1700441 Score: 62
Period size: 6 Copynumber: 15.0 Consensus size: 6
1700342 TTAAATTTGT
* * * **
1700352 TTTATAA TTTTAA TTTTAA TTTAAA CTT-AA GGTAAA TTTAAA TAATTAAA
1 TTTA-AA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA T--TTAAA
*
1700402 TTTAAA TTTAAGA --TAAA TTTAAA TTTAAA -TAAAA TTTAAA
1 TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
1700442 ATCAATTTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
4 1 0.01
5 10 0.15
6 46 0.69
7 4 0.06
8 6 0.09
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:1700409 original size:11 final size:11
Alignment explanation
Indices: 1700395--1700451 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
1700385 AAATTTAAAT
1700395 AATTAAATTTA
1 AATTAAATTTA
* **
1700406 AATTTAAGATA
1 AATTAAATTTA
1700417 AATTTAAATTTA
1 AA-TTAAATTTA
*
1700429 AATAAAATTTA
1 AATTAAATTTA
* *
1700440 AAATCAATTTA
1 AATTAAATTTA
1700451 A
1 A
1700452 CTTCTCAATT
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
11 27 0.77
12 8 0.23
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (11 bp):
AATTAAATTTA
Found at i:1700973 original size:39 final size:38
Alignment explanation
Indices: 1700906--1701370 Score: 218
Period size: 38 Copynumber: 12.4 Consensus size: 38
1700896 ACGTTGCTCT
1700906 TACTTCAATTTC-AGAGATAAAGACGTGTTATCCAACTC
1 TACTTCAATTTCAAGAGATAAAGACGTGTTATCC-ACTC
* * * *
1700944 TACTTCGATTTCAAGAGATAGAGATGTGTTATTCACTC
1 TACTTCAATTTCAAGAGATAAAGACGTGTTATCCACTC
* * * *
1700982 TACTTCAATTTCAAGCGGACATGAAA-A-GAT-CT-TGCTC-C
1 TACTTCAATTTCAA---GAGAT-AAAGACG-TGTTATCCACTC
* * *
1701020 TACTTCAATTTC-AGAGATAAAGACGAGTTATCCATTT
1 TACTTCAATTTCAAGAGATAAAGACGTGTTATCCACTC
* * *
1701057 TACTTCAATTTCAAGCGGAT---GAC--G-T-TGCTCT-
1 TACTTCAATTTCAAG-AGATAAAGACGTGTTATCCACTC
* *
1701088 TACTTCAATTTC-AGAGATAGAGACGTGTTATCCACTT
1 TACTTCAATTTCAAGAGATAAAGACGTGTTATCCACTC
* * * *** *
1701125 TACTTCAATTTCAAGCGGA-CAGGAAAAG--ATCCTGCTCC
1 TACTTCAATTTCAAG-AGATAAAGACGTGTTATCC-ACT-C
**
1701163 TACTTCAATTTC-AGAGATAAAGACACGCTTATCCAACTC
1 TACTTCAATTTCAAGAGATAAAGACGTG-TTATCC-ACTC
1701202 TACTTCAATTTCAAGAGGATAGGAAATGACGT-TGT-T---CT-
1 TACTTCAATTTCAAGA-GAT---AAA-GACGTGT-TATCCACTC
* *
1701240 TACTTCAATTTCAA-AGATAAAGACTTGTTATCCAAGTC
1 TACTTCAATTTCAAGAGATAAAGACGTGTTATCC-ACTC
* ** **
1701278 TACTTCAATTTCAAGAGGAT-AGGAAATG--ATCTTGCTC
1 TACTTCAATTTCAAGA-GATAAAGACGTGTTATC-CACTC
1701315 TTACTTCAATTTC-AGAGATAAAGACGTGTTATCCAACTC
1 -TACTTCAATTTCAAGAGATAAAGACGTGTTATCC-ACTC
1701354 TACTTCAATTTCAAGAG
1 TACTTCAATTTCAAGAG
1701371 GATATGAAAA
Statistics
Matches: 320, Mismatches: 55, Indels: 103
0.67 0.12 0.22
Matches are distributed among these distances:
29 3 0.01
30 2 0.01
31 12 0.04
32 11 0.03
33 9 0.03
34 7 0.02
35 3 0.01
36 21 0.07
37 49 0.15
38 112 0.35
39 57 0.18
40 14 0.04
41 9 0.03
42 2 0.01
43 2 0.01
44 4 0.01
45 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (38 bp):
TACTTCAATTTCAAGAGATAAAGACGTGTTATCCACTC
Found at i:1701032 original size:76 final size:76
Alignment explanation
Indices: 1700943--1701389 Score: 529
Period size: 76 Copynumber: 6.0 Consensus size: 76
1700933 TTATCCAACT
* * * * * * *
1700943 CTACTTCGATTTCAAGAGATAGAGATGTGTTATTC-ACTCTACTTCAATTTCAAGCGGACATGAA
1 CTACTTCAATTTC-AGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
1701007 AAGATCTTGCTC
65 AAGATCTTGCTC
* * * *
1701019 CTACTTCAATTTCAGAGATAAAGACGAGTTATCC-ATTTTACTTCAATTTCAAGCGGAT--G--A
1 CTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
*
1701079 CG---TTGCTC
66 AGATCTTGCTC
* * * * *
1701087 TTACTTCAATTTCAGAGATAGAGACGTGTTATCC-ACTTTACTTCAATTTCAAGCGGACAGGAAA
1 CTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
*
1701151 AGATCCTGCTC
66 AGATCTTGCTC
**
1701162 CTACTTCAATTTCAGAGATAAAGACACGCTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
1 CTACTTCAATTTCAGAGATAAAGACGTG-TTATCCAACTCTACTTCAATTTCAAGAGGATAGGAA
* *
1701227 ATGA-CGTTGTTC
65 AAGATC-TTGCTC
* * * *
1701239 TTACTTCAATTTCAAAGATAAAGACTTGTTATCCAAGTCTACTTCAATTTCAAGAGGATAGGAAA
1 CTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
*
1701304 TGATCTTGCTC
66 AGATCTTGCTC
* *
1701315 TTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATATGAAA
1 CTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
1701380 AGATCTTGCT
66 AGATCTTGCT
1701390 ACGGTCTGAT
Statistics
Matches: 323, Mismatches: 37, Indels: 22
0.85 0.10 0.06
Matches are distributed among these distances:
68 59 0.18
70 1 0.00
71 2 0.01
72 2 0.01
73 1 0.00
75 67 0.21
76 133 0.41
77 58 0.18
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (76 bp):
CTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGGATAGGAAA
AGATCTTGCTC
Found at i:1701093 original size:182 final size:184
Alignment explanation
Indices: 1700762--1701139 Score: 559
Period size: 182 Copynumber: 2.1 Consensus size: 184
1700752 GCTATCTTTA
* *
1700762 TTCAATTTC-AGAGATATAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGACAGGAAATGA
1 TTCAATTTCAAGAGATAGAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGACAGGAAAAGA
* **
1700826 TCTTGCTCCTATTGAATTGCAGAGAGATAAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGA
66 TCTTGCTCCTATTCAATTGCA-AGAGATAAAAGACGAGATATCCAGCTTTACTTCAATTTCAAGA
1700891 GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTAC
130 GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCC-ACTCTAC
* * * *
1700947 TTCGATTTCAAGAGATAGAGATGTGTTATTC-ACTCTACTTCAATTTCAAGCGGACATGAAAAGA
1 TTCAATTTCAAGAGATAGAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGACAGGAAAAGA
* * * *
1701011 TCTTGCTCCTACTTCAATTTC-AGAGAT-AAAGACGAGTTATCCA-TTTTACTTCAATTTCAAGC
66 TCTTGCTCCTA-TTCAATTGCAAGAGATAAAAGACGAGATATCCAGCTTTACTTCAATTTCAAGA
* *
1701073 GGATGACGTTGCTCTTACTTCAATTTCAGAGATAGAGACGTGTTATCCACTTTAC
130 GGATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTAC
1701128 TTCAATTTCAAG
1 TTCAATTTCAAG
1701140 CGGACAGGAA
Statistics
Matches: 175, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
181 17 0.10
182 64 0.37
183 13 0.07
184 6 0.03
185 50 0.29
186 25 0.14
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (184 bp):
TTCAATTTCAAGAGATAGAGACGTGTTATCCAACTCTACTTCAATTTCAAGCGGACAGGAAAAGA
TCTTGCTCCTATTCAATTGCAAGAGATAAAAGACGAGATATCCAGCTTTACTTCAATTTCAAGAG
GATGACGTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCACTCTAC
Found at i:1701129 original size:143 final size:144
Alignment explanation
Indices: 1700944--1701373 Score: 576
Period size: 143 Copynumber: 2.9 Consensus size: 144
1700934 TATCCAACTC
* * * *
1700944 TACTTCGATTTCAAGAGATAGAGATGTGTTATTCACTCTACTTCAATTTCAAGCGGACATGAAAA
1 TACTTCAATTTC-AGAGATAGAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGACAGGAAAA
* * *
1701009 GATCTTGCTCCTACTTCAATTTCAGAGATAAAGACGAGTTATCC-ATTTTACTTCAATTTCAAGC
65 GATCTTGCTCCTACTTCAATTTCAGAGATAAAGACGAGTTATCCAACTCTACTTCAATTTCAAGA
1701073 GGATGACGTTGCTCT
130 GGATGACGTTGCTCT
*
1701088 TACTTCAATTTCAGAGATAGAGACGTGTTATCCACTTTACTTCAATTTCAAGCGGACAGGAAAAG
1 TACTTCAATTTCAGAGATAGAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGACAGGAAAAG
*
1701153 ATCCTGCTCCTACTTCAATTTCAGAGATAAAGAC-ACGCTTATCCAACTCTACTTCAATTTCAAG
66 ATCTTGCTCCTACTTCAATTTCAGAGATAAAGACGA-G-TTATCCAACTCTACTTCAATTTC-A-
*
1701217 AGGATAGGAAATGACGTTGTTCT
127 A-G--AGG--ATGACGTTGCTCT
* * * * * * *
1701240 TACTTCAATTTCAAAGATAAAGACTTGTTATCCAAGTCTACTTCAATTTCAAGAGGATAGGAAAT
1 TACTTCAATTTCAGAGATAGAGACGTGTTATCC-ACTCTACTTCAATTTCAAGCGGACAGGAAAA
* *
1701305 GATCTTGCTCTTACTTCAATTTCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGA
65 GATCTTGCTCCTACTTCAATTTCAGAGATAAAGACGAGTTATCCAACTCTACTTCAATTTCAAGA
1701370 GGAT
130 GGAT
1701374 ATGAAAAGAT
Statistics
Matches: 253, Mismatches: 21, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
142 1 0.00
143 83 0.33
144 17 0.07
145 16 0.06
146 1 0.00
147 4 0.02
148 1 0.00
149 1 0.00
150 3 0.01
151 1 0.00
152 65 0.26
153 60 0.24
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (144 bp):
TACTTCAATTTCAGAGATAGAGACGTGTTATCCACTCTACTTCAATTTCAAGCGGACAGGAAAAG
ATCTTGCTCCTACTTCAATTTCAGAGATAAAGACGAGTTATCCAACTCTACTTCAATTTCAAGAG
GATGACGTTGCTCT
Found at i:1701207 original size:182 final size:181
Alignment explanation
Indices: 1700787--1701214 Score: 402
Period size: 182 Copynumber: 2.3 Consensus size: 181
1700777 ATAGACGTGT
* * * * *** * *
1700787 TATCCAACTCTACTTCAATTTCAAGCGGACAGGAAATGATCTTGCTCCTA-TTGAATTGCAGAGA
1 TATCC-ACTCTACTTCAATTTCAAGCAGAAAAGAAAAGATCCAACTCCTACTTCAATTTC--AGA
** * *
1700851 GATAAAAGACTTGATATCCAGCTTTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATT
63 GAT-AAAGACGAGTTATCCA-TTTTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATT
* * ***
1700916 TCAGAGATAAAGACGTGTTATCCAACTCTACTTCGATTTCAAGAGATAGAGATGTG
126 TCAGAGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGACAGAGAAAAG
* * * * ***
1700972 TTATTCACTCTACTTCAATTTCAAGCGGACATGAAAAGATCTTGCTCCTACTTCAATTTCAGAGA
1 -TATCCACTCTACTTCAATTTCAAGCAGAAAAGAAAAGATCCAACTCCTACTTCAATTTCAGAGA
*
1701037 TAAAGACGAGTTATCCATTTTACTTCAATTTCAAGCGGATGACGTTGCTCTTACTTCAATTTCAG
65 TAAAGACGAGTTATCCATTTTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAG
* * *
1701102 AGATAGAGACGTGTTATCC-ACTTTACTTCAATTTCAAGCGGACAG-GAAAAG
130 AGATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAG-AGACAGAGAAAAG
* * *
1701153 -ATCCTGCTCCTACTTCAATTTC-AG-AGATAAAGACACGCTTATCCAACT-CTACTTCAATTTC
1 TATCC-ACT-CTACTTCAATTTCAAGCAGA-AAAGAAAAG---ATCCAACTCCTACTTCAATTTC
1701214 A
60 A
1701215 AGAGGATAGG
Statistics
Matches: 206, Mismatches: 28, Indels: 20
0.81 0.11 0.08
Matches are distributed among these distances:
179 5 0.02
180 9 0.04
181 33 0.16
182 82 0.40
183 18 0.09
184 6 0.03
185 42 0.20
186 11 0.05
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (181 bp):
TATCCACTCTACTTCAATTTCAAGCAGAAAAGAAAAGATCCAACTCCTACTTCAATTTCAGAGAT
AAAGACGAGTTATCCATTTTACTTCAATTTCAAGAGGATGACGTTGCTCTTACTTCAATTTCAGA
GATAAAGACGTGTTATCCAACTCTACTTCAATTTCAAGAGACAGAGAAAAG
Found at i:1712855 original size:17 final size:18
Alignment explanation
Indices: 1712829--1712862 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
1712819 ACAGAGTTCA
*
1712829 GGATATGAAAA-TCATCC
1 GGATAGGAAAATTCATCC
1712846 GGATAGGAAAATTCATC
1 GGATAGGAAAATTCATC
1712863 TTCACTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (18 bp):
GGATAGGAAAATTCATCC
Found at i:1713086 original size:16 final size:16
Alignment explanation
Indices: 1713067--1713100 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1713057 TATAATACTT
* *
1713067 TATATTATGTTATTTA
1 TATATTATATAATTTA
1713083 TATATTATATAATTTA
1 TATATTATATAATTTA
1713099 TA
1 TA
1713101 ACAAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATATTATATAATTTA
Found at i:1715120 original size:101 final size:101
Alignment explanation
Indices: 1714940--1715187 Score: 379
Period size: 101 Copynumber: 2.5 Consensus size: 101
1714930 CCAACACATC
* * *
1714940 AAATTGACACCCTATGCCTCACCGGATAAATCTGAAGTAATAACTCACGCCCTACGCTAAAATAA
1 AAATTGACACCCTATGCCTCATCGGATAAATCCGAAGTAATAAATCACGCCCTACGCTAAAATAA
* * * **
1715005 AGTTGACACTCAGTGTCTCATCGGTTAAACTGAAGT
66 AGTTGACACCCAGTGCCTCATCGGATAAACCAAAGT
* *
1715041 AAATTGACACCCTGTGCCTTATCGGATAAATCCGAAGTAATAAATCACGCCCTACGCTAAAATAA
1 AAATTGACACCCTATGCCTCATCGGATAAATCCGAAGTAATAAATCACGCCCTACGCTAAAATAA
*
1715106 AGTTGACACCCAGTGCCTCATTGGATAAACCAAAGT
66 AGTTGACACCCAGTGCCTCATCGGATAAACCAAAGT
* *
1715142 AAATTGACACCCTATGCCTCATCGGATAATTCCGAAGTAATGAATC
1 AAATTGACACCCTATGCCTCATCGGATAAATCCGAAGTAATAAATC
1715188 GCACCATGAA
Statistics
Matches: 132, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 132 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (101 bp):
AAATTGACACCCTATGCCTCATCGGATAAATCCGAAGTAATAAATCACGCCCTACGCTAAAATAA
AGTTGACACCCAGTGCCTCATCGGATAAACCAAAGT
Found at i:1725690 original size:4 final size:4
Alignment explanation
Indices: 1725681--1725733 Score: 54
Period size: 4 Copynumber: 12.8 Consensus size: 4
1725671 TATTTTTATT
* *
1725681 TTTA TTTA TTTT TTTA TTT- TTCTA TCTTA TTTTA TTTA TTTA TTCA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA T-TTA -TTTA TTTA TTTA TTTA TTTA
1725731 TTT
1 TTT
1725734 TTGTCTAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
3 2 0.05
4 31 0.76
5 6 0.15
6 2 0.05
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTA
Found at i:1725698 original size:8 final size:8
Alignment explanation
Indices: 1725673--1725735 Score: 54
Period size: 8 Copynumber: 7.4 Consensus size: 8
1725663 AACCCAATTA
1725673 TTTTTATTT
1 TTTTTA-TT
1725682 TTATTTATT
1 TT-TTTATT
1725691 TTTTTATT
1 TTTTTATT
*
1725699 TTTCTATCT
1 TTTTTAT-T
1725708 TATTTTATT
1 T-TTTTATT
*
1725717 TATTTATT
1 TTTTTATT
**
1725725 CATTTATT
1 TTTTTATT
1725733 TTT
1 TTT
1725736 GTCTAGGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 26 0.58
9 10 0.22
10 9 0.20
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTATT
Found at i:1726533 original size:107 final size:105
Alignment explanation
Indices: 1726422--1726613 Score: 287
Period size: 107 Copynumber: 1.8 Consensus size: 105
1726412 TTTGTTAGAT
* * *
1726422 TGAGTAACCGGGGTGGAGTGCTTGGTTGTCATTTCACTTCGCGTCAAAAGGACTAATGCATTCTA
1 TGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGACCAATGCATTCTA
1726487 CAAA-AAAAAAAAGAGAAGAAAAAAATTGAGAGCATGTTGGGC
66 -AAAGAAAAAAAAG-GAA-AAAAAAATTGAGAGCATGTTGGGC
* * * *
1726529 TGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTTATTTCGCGTCAAAAGGTCCAATGTATTCTA
1 TGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGACCAATGCATTCTA
1726594 AAAGAAAAAAAAGGAAAAAA
66 AAAGAAAAAAAAGGAAAAAA
1726614 TTCACAAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
105 4 0.05
106 6 0.08
107 67 0.87
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.24
Consensus pattern (105 bp):
TGAGTAACCGGGATGGAGTGCTTGGGTGTCATTTCACTTCGCGTCAAAAGGACCAATGCATTCTA
AAAGAAAAAAAAGGAAAAAAAAATTGAGAGCATGTTGGGC
Found at i:1726963 original size:2 final size:2
Alignment explanation
Indices: 1726956--1726987 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1726946 TGGATATTAA
*
1726956 AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1726988 TTAGAGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1727208 original size:19 final size:19
Alignment explanation
Indices: 1727186--1727230 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
1727176 TTATATTAGG
1727186 ATTTAATATTTAAGATATT-
1 ATTTAATATTTAA-ATATTA
* *
1727205 ATTTATTATTTAAATTTTA
1 ATTTAATATTTAAATATTA
1727224 ATTTAAT
1 ATTTAAT
1727231 TTATGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTAATATTTAAATATTA
Found at i:1731729 original size:9 final size:9
Alignment explanation
Indices: 1731715--1731752 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
1731705 TAGTTATTAT
1731715 TATTAAATA
1 TATTAAATA
1731724 TATTAAATA
1 TATTAAATA
1731733 -ATTAATATA
1 TATTAA-ATA
*
1731742 TATAAAATA
1 TATTAAATA
1731751 TA
1 TA
1731753 GAGATAGTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
8 5 0.19
9 17 0.65
10 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
TATTAAATA
Found at i:1736210 original size:33 final size:32
Alignment explanation
Indices: 1736093--1736211 Score: 114
Period size: 33 Copynumber: 3.5 Consensus size: 32
1736083 TTTGCAAAAC
*
1736093 TAATGATACATAAAATATTTTAAA-ATTTTAAATA
1 TAATGATA-ATAAAATA-TTTAAATA-ATTAAATA
* * *
1736127 TAATAATAATAATTTATATTTAAATAATTTAATA
1 TAATGATAATAA--AATATTTAAATAATTAAATA
* *
1736161 TAATGATAATTGAAATATTTAAATAATTCAATA
1 TAATGATAA-TAAAATATTTAAATAATTAAATA
1736194 TAATGATATATAAAATAT
1 TAATGATA-ATAAAATAT
1736212 AAATTAATCT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
33 37 0.52
34 28 0.39
35 6 0.08
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (32 bp):
TAATGATAATAAAATATTTAAATAATTAAATA
Found at i:1741461 original size:51 final size:52
Alignment explanation
Indices: 1741368--1741475 Score: 155
Period size: 51 Copynumber: 2.1 Consensus size: 52
1741358 ATTCGAAATG
* * * *
1741368 TAAAAGAGTTCGAAAAAAATTATAGGTTTAAAAAATAGGATTGAACTTTAAA
1 TAAAAGAGTTCGAAAAAAATTATAGATTCAAAAAATAAGATTGAACTTCAAA
* *
1741420 TAAAAGAGTTTGAAAAAAA-TATAGATTCGAAAAATAAGATTGAACTTCAAA
1 TAAAAGAGTTCGAAAAAAATTATAGATTCAAAAAATAAGATTGAACTTCAAA
1741471 TAAAA
1 TAAAA
1741476 TATTTTTGGC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
51 32 0.64
52 18 0.36
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (52 bp):
TAAAAGAGTTCGAAAAAAATTATAGATTCAAAAAATAAGATTGAACTTCAAA
Found at i:1742799 original size:42 final size:40
Alignment explanation
Indices: 1742695--1742803 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 40
1742685 TTAGTTTAGT
1742695 TATATGATATTTAAATAATTTAATATAATGATAAACAAAG
1 TATATGATATTTAAATAATTTAATATAATGATAAACAAAG
* *
1742735 TATA-G-TTTTTAAATACTTTTTAAGTAATTAAT-ATAAACAAAG
1 TATATGATATTTAAATA--ATTTAA-T-A-TAATGATAAACAAAG
*
1742777 TATATGATATTTAAGTAATTTAATATA
1 TATATGATATTTAAATAATTTAATATA
1742804 GGTTCCATGA
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
38 9 0.16
39 3 0.05
40 10 0.18
41 2 0.04
42 20 0.35
43 5 0.09
44 8 0.14
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (40 bp):
TATATGATATTTAAATAATTTAATATAATGATAAACAAAG
Found at i:1744769 original size:26 final size:26
Alignment explanation
Indices: 1744723--1744778 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
1744713 TGAAAAAAAA
** *
1744723 TTTGAACCCCTTATGAGTTGAAATTT
1 TTTGAACCCCTTAAAAATTGAAATTT
*
1744749 TTTGAACCCCTTAAAAATTGAATTTT
1 TTTGAACCCCTTAAAAATTGAAATTT
1744775 TTTG
1 TTTG
1744779 GATCCTTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (26 bp):
TTTGAACCCCTTAAAAATTGAAATTT
Found at i:1756603 original size:12 final size:12
Alignment explanation
Indices: 1756582--1756614 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
1756572 TACCTATTTC
1756582 TTTGGCAGTAAA
1 TTTGGCAGTAAA
*
1756594 TTTGGTAGTAAA
1 TTTGGCAGTAAA
1756606 TTTGGCAGT
1 TTTGGCAGT
1756615 GGTTAGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.27, C:0.06, G:0.27, T:0.39
Consensus pattern (12 bp):
TTTGGCAGTAAA
Found at i:1760428 original size:29 final size:29
Alignment explanation
Indices: 1760386--1760518 Score: 137
Period size: 30 Copynumber: 4.6 Consensus size: 29
1760376 AATGGAGTCA
*
1760386 AAAAT-GTAATTTTTGGATGCTCGAGGGGT
1 AAAATGGTAATTTTTGGATGCTCG-GGGGC
* *
1760415 AAAATGGTAATTTTTGGATGTTCGGGGGT
1 AAAATGGTAATTTTTGGATGCTCGGGGGC
* * *
1760444 AAAATAGTAA-TTTTGGACAT-TTCGGGAGC
1 AAAATGGTAATTTTTGG--ATGCTCGGGGGC
**
1760473 AAAATGGTAATTTTTGGACACTCGAGGGGC
1 AAAATGGTAATTTTTGGATGCTCG-GGGGC
1760503 AAAATGGTAATTTTTG
1 AAAATGGTAATTTTTG
1760519 AATGTTTGTG
Statistics
Matches: 90, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.08
29 38 0.42
30 45 0.50
ACGTcount: A:0.30, C:0.08, G:0.29, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGATGCTCGGGGGC
Found at i:1760657 original size:30 final size:30
Alignment explanation
Indices: 1760583--1760758 Score: 236
Period size: 30 Copynumber: 5.9 Consensus size: 30
1760573 TTTTAGACAT
1760583 TTTA-GGG-TAAAATGGTAATTTTATTGGAAAG
1 TTTAGGGGTTAAAAT-GTAA-TTT-TTGGAAAG
* *
1760614 TTT-GGGGTCAAAATGTAATTTTTGGAAAT
1 TTTAGGGGTTAAAATGTAATTTTTGGAAAG
1760643 TTTAGGGGTTAAAATGTAATTTTTGG-AAG
1 TTTAGGGGTTAAAATGTAATTTTTGGAAAG
1760672 TTT-GAGGGTTAAAATGTAATTTTTGGAAAG
1 TTTAG-GGGTTAAAATGTAATTTTTGGAAAG
*
1760702 TTTAGGGGTCAAAATGTAATTTTTGGAAAG
1 TTTAGGGGTTAAAATGTAATTTTTGGAAAG
* *
1760732 TTTAGGGGTTAAAATATGATTTTTGGA
1 TTTAGGGGTTAAAATGTAATTTTTGGA
1760759 TAATTTAAGG
Statistics
Matches: 131, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
28 1 0.01
29 36 0.27
30 78 0.60
31 11 0.08
32 5 0.04
ACGTcount: A:0.32, C:0.01, G:0.26, T:0.40
Consensus pattern (30 bp):
TTTAGGGGTTAAAATGTAATTTTTGGAAAG
Found at i:1760686 original size:59 final size:60
Alignment explanation
Indices: 1760564--1760764 Score: 243
Period size: 59 Copynumber: 3.4 Consensus size: 60
1760554 TTCGAGCTCA
* * * *
1760564 AAAATGT-AGTTTTAGACATTTTA-GGG-TAAAATGGTAATTTTATTGGAAAGTTTG-GGGTC
1 AAAATGTAATTTTTGGAAATTTTAGGGGTTAAAAT-GTAA-TTT-TTGGAAAGTTTGAGGGTT
1760623 AAAATGTAATTTTTGGAAATTTTAGGGGTTAAAATGTAATTTTTGG-AAGTTTGAGGGTT
1 AAAATGTAATTTTTGGAAATTTTAGGGGTTAAAATGTAATTTTTGGAAAGTTTGAGGGTT
* *
1760682 AAAATGTAATTTTTGGAAAGTTTAGGGGTCAAAATGTAATTTTTGGAAAGTTT-AGGGGTT
1 AAAATGTAATTTTTGGAAATTTTAGGGGTTAAAATGTAATTTTTGGAAAGTTTGA-GGGTT
* *
1760742 AAAATATGATTTTTGGATAATTT
1 AAAATGTAATTTTTGGA-AATTT
1760765 AAGGACCTTT
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
58 7 0.06
59 60 0.48
60 42 0.33
61 11 0.09
62 6 0.05
ACGTcount: A:0.33, C:0.01, G:0.24, T:0.41
Consensus pattern (60 bp):
AAAATGTAATTTTTGGAAATTTTAGGGGTTAAAATGTAATTTTTGGAAAGTTTGAGGGTT
Found at i:1762618 original size:16 final size:16
Alignment explanation
Indices: 1762599--1762710 Score: 67
Period size: 16 Copynumber: 7.1 Consensus size: 16
1762589 ATGTATTTAT
* *
1762599 TTTAGATTTAAATCAA
1 TTTAAATTTAAATAAA
1762615 TTTAAATTTAAATAAA
1 TTTAAATTTAAATAAA
*
1762631 TTTCAA--T---T-AA
1 TTTAAATTTAAATAAA
*
1762641 TTTAAATTTAAAATAATT
1 TTTAAATTT-AAATAA-A
*
1762659 TTTGAATTTAAAATAAA
1 TTTAAATTT-AAATAAA
*
1762676 TTTAAACTTAAA-ACAA
1 TTTAAATTTAAATA-AA
1762692 GTTTAAATTTAAAATAAA
1 -TTTAAATTT-AAATAAA
1762710 T
1 T
1762711 ATCCAAATGG
Statistics
Matches: 74, Mismatches: 10, Indels: 23
0.69 0.09 0.21
Matches are distributed among these distances:
10 7 0.09
11 1 0.01
12 1 0.01
14 1 0.01
15 1 0.01
16 25 0.34
17 17 0.23
18 20 0.27
19 1 0.01
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (16 bp):
TTTAAATTTAAATAAA
Found at i:1762688 original size:17 final size:17
Alignment explanation
Indices: 1762639--1762710 Score: 90
Period size: 17 Copynumber: 4.2 Consensus size: 17
1762629 AATTTCAATT
1762639 AATTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
* *
1762656 ATTTTTGAATTTAAAATA
1 A-ATTTAAATTTAAAATA
* *
1762674 AATTTAAACTTAAAACA
1 AATTTAAATTTAAAATA
*
1762691 AGTTTAAATTTAAAATA
1 AATTTAAATTTAAAATA
1762708 AAT
1 AAT
1762711 ATCCAAATGG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
17 29 0.66
18 15 0.34
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (17 bp):
AATTTAAATTTAAAATA
Found at i:1762706 original size:34 final size:35
Alignment explanation
Indices: 1762639--1762710 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 35
1762629 AATTTCAATT
* * * *
1762639 AATTTAAATTTAAAATAATTTTTGAATTTAAAATA
1 AATTTAAACTTAAAACAATGTTTAAATTTAAAATA
1762674 AATTTAAACTTAAAACAA-GTTTAAATTTAAAATA
1 AATTTAAACTTAAAACAATGTTTAAATTTAAAATA
1762708 AAT
1 AAT
1762711 ATCCAAATGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
34 17 0.52
35 16 0.48
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (35 bp):
AATTTAAACTTAAAACAATGTTTAAATTTAAAATA
Found at i:1768343 original size:23 final size:25
Alignment explanation
Indices: 1768288--1768344 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 25
1768278 GATTGAGACA
*
1768288 TAAATAATTACAAATTTTAATAATT
1 TAAATAAATACAAATTTTAATAATT
1768313 TGAAATAAATA-AAA-TTTAA-AATCT
1 T-AAATAAATACAAATTTTAATAAT-T
1768337 TAAATAAA
1 TAAATAAA
1768345 ATCTGAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 10 0.34
24 7 0.24
25 4 0.14
26 8 0.28
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (25 bp):
TAAATAAATACAAATTTTAATAATT
Found at i:1773605 original size:31 final size:31
Alignment explanation
Indices: 1773532--1773677 Score: 133
Period size: 31 Copynumber: 4.8 Consensus size: 31
1773522 TAATCACGTT
** *
1773532 AATATTAAATTAAATTTAATA-TATC-ATATT
1 AATATTAAATT-AATAAAATATTATCTATATA
*
1773562 AATAATAAATTAATAAAATATTATCTATATA
1 AATATTAAATTAATAAAATATTATCTATATA
* * *
1773593 AATATTAAA-T--TAAATTAATATCTTATATT
1 AATATTAAATTAATAAAATATTATC-TATATA
* * *
1773622 AATATTAAATTAATAAAATACTGTCTAGATA
1 AATATTAAATTAATAAAATATTATCTATATA
1773653 AATATTAAATTAA-AACAATATTATC
1 AATATTAAATTAATAA-AATATTATC
1773678 ATTGAAAAGT
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
28 10 0.11
29 21 0.22
30 18 0.19
31 36 0.38
32 9 0.10
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (31 bp):
AATATTAAATTAATAAAATATTATCTATATA
Found at i:1773625 original size:60 final size:61
Alignment explanation
Indices: 1773532--1773666 Score: 209
Period size: 60 Copynumber: 2.2 Consensus size: 61
1773522 TAATCACGTT
* *
1773532 AATATTAAATTAAATTTAATATATCATATTAATAATAAATTAATAAAATATTATCTATATA
1 AATATTAAATTAAATTTAATATATCATATTAATAATAAATTAATAAAATACTATCTAGATA
* * * *
1773593 AATATTAAATTAAA-TTAATATCTTATATTAATATTAAATTAATAAAATACTGTCTAGATA
1 AATATTAAATTAAATTTAATATATCATATTAATAATAAATTAATAAAATACTATCTAGATA
1773653 AATATTAAATTAAA
1 AATATTAAATTAAA
1773667 ACAATATTAT
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
60 54 0.79
61 14 0.21
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (61 bp):
AATATTAAATTAAATTTAATATATCATATTAATAATAAATTAATAAAATACTATCTAGATA
Found at i:1774919 original size:48 final size:48
Alignment explanation
Indices: 1774848--1774945 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
1774838 ATACATGTAT
1774848 ATGCTTCTACTGTTATGCTAGCTATCTACTAGCTTATTATCCATACTA
1 ATGCTTCTACTGTTATGCTAGCTATCTACTAGCTTATTATCCATACTA
1774896 ATGCTTCTACTGTTATGCTAGCTATCTACTAGCTTATTATCCATACTA
1 ATGCTTCTACTGTTATGCTAGCTATCTACTAGCTTATTATCCATACTA
1774944 AT
1 AT
1774946 AAGGTTGATC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (48 bp):
ATGCTTCTACTGTTATGCTAGCTATCTACTAGCTTATTATCCATACTA
Found at i:1774935 original size:24 final size:24
Alignment explanation
Indices: 1774860--1774935 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
1774850 GCTTCTACTG
1774860 TTATGCTAGCTATCTACTAGCTTA
1 TTATGCTAGCTATCTACTAGCTTA
* * *
1774884 TTATCCATA-CTAATGCTTCTA-C-TG
1 TTATGC-TAGCT-AT-CTACTAGCTTA
1774908 TTATGCTAGCTATCTACTAGCTTA
1 TTATGCTAGCTATCTACTAGCTTA
1774932 TTAT
1 TTAT
1774936 CCATACTAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
22 5 0.12
23 5 0.12
24 20 0.50
25 5 0.12
26 5 0.12
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (24 bp):
TTATGCTAGCTATCTACTAGCTTA
Found at i:1776170 original size:6 final size:6
Alignment explanation
Indices: 1776159--1776193 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
1776149 ATGATGTAAA
* *
1776159 GAAGAT GAAGAT GAAGAT GAAGAC GAAGAA GAAGA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGA
1776194 ACCATTCACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.54, C:0.03, G:0.34, T:0.09
Consensus pattern (6 bp):
GAAGAT
Found at i:1777804 original size:18 final size:19
Alignment explanation
Indices: 1777769--1777825 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
1777759 AATAATTTTT
1777769 AAATTTAAAATATTTATAA
1 AAATTTAAAATATTTATAA
*
1777788 AAATTTTAAAT-TTTAT--
1 AAATTTAAAATATTTATAA
* *
1777804 ATATTTAAAAATATATATAA
1 AAATTT-AAAATATTTATAA
1777824 AA
1 AA
1777826 TTATTTCTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
16 5 0.17
17 4 0.14
18 9 0.31
19 10 0.34
20 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
AAATTTAAAATATTTATAA
Found at i:1777807 original size:26 final size:25
Alignment explanation
Indices: 1777765--1777814 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
1777755 GCAAAATAAT
1777765 TTTTAAATTTAAAATATTTATAAAAA
1 TTTTAAATTTAAAATATTTA-AAAAA
* *
1777791 TTTTAAATTTTATATATTTAAAAA
1 TTTTAAATTTAAAATATTTAAAAA
1777815 TATATATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TTTTAAATTTAAAATATTTAAAAAA
Found at i:1781809 original size:16 final size:17
Alignment explanation
Indices: 1781768--1781811 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
1781758 TCTGGTTTTA
1781768 TTTTTATA-A-TT-ATT
1 TTTTTATATATTTAATT
*
1781782 TTTTTATGTATTTAATT
1 TTTTTATATATTTAATT
1781799 TTTTTA-ATATTTA
1 TTTTTATATATTTA
1781812 CTAAATTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 7 0.28
15 1 0.04
16 8 0.32
17 9 0.36
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTTATATATTTAATT
Found at i:1784354 original size:3 final size:3
Alignment explanation
Indices: 1784346--1784371 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1784336 CTTTAATCTT
1784346 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
1784372 CATATATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:1791205 original size:11 final size:11
Alignment explanation
Indices: 1791186--1791258 Score: 67
Period size: 11 Copynumber: 6.5 Consensus size: 11
1791176 CATTTTAAAA
* *
1791186 TTAAATTTATT
1 TTAATTTTAAT
1791197 TTAATTTTAAAT
1 TTAATTTT-AAT
1791209 TT-ATTTTAAAT
1 TTAATTTT-AAT
* *
1791220 TCAATTTTAGT
1 TTAATTTTAAT
1791231 TTAATTTTGAAT
1 TTAATTTT-AAT
*
1791243 TTAATTTAAAT
1 TTAATTTTAAT
1791254 TTAAT
1 TTAAT
1791259 ATTATTATAA
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
11 34 0.65
12 18 0.35
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (11 bp):
TTAATTTTAAT
Found at i:1791215 original size:34 final size:34
Alignment explanation
Indices: 1791177--1791257 Score: 101
Period size: 34 Copynumber: 2.4 Consensus size: 34
1791167 GGCCCAAACC
*
1791177 ATTTTAAAATTAAATTTATTTTAATTTTAAATTT
1 ATTTTAAAATTAAATTTAGTTTAATTTTAAATTT
* *
1791211 ATTTT-AAATTCAATTTTAGTTTAATTTTGAATTT
1 ATTTTAAAATT-AAATTTAGTTTAATTTTAAATTT
* *
1791245 AATTTAAATTTAA
1 ATTTTAAAATTAA
1791258 TATTATTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 5 0.12
34 31 0.77
35 4 0.10
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.57
Consensus pattern (34 bp):
ATTTTAAAATTAAATTTAGTTTAATTTTAAATTT
Found at i:1791228 original size:17 final size:16
Alignment explanation
Indices: 1791177--1791269 Score: 69
Period size: 17 Copynumber: 5.5 Consensus size: 16
1791167 GGCCCAAACC
1791177 ATTTTAAAATTAAATTT
1 ATTTT-AAATTAAATTT
*
1791194 ATTTTAATTTTAAATTT
1 ATTTTAA-ATTAAATTT
*
1791211 ATTTTAAATTCAATTTT
1 ATTTTAAATT-AAATTT
* * *
1791228 AGTTTAATTTTGAATTT
1 ATTTTAA-ATTAAATTT
* *
1791245 AATTTAAATTTAATATT
1 ATTTTAAATTAAAT-TT
*
1791262 ATTATAAA
1 ATTTTAAA
1791270 AAGAAAAGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
16 9 0.15
17 49 0.82
18 2 0.03
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (16 bp):
ATTTTAAATTAAATTT
Found at i:1791257 original size:23 final size:23
Alignment explanation
Indices: 1791196--1791258 Score: 67
Period size: 23 Copynumber: 2.8 Consensus size: 23
1791186 TTAAATTTAT
*
1791196 TTTAATTTTAAATTTATTTTAAA
1 TTTAATTTTAAATTTAATTTAAA
* * *
1791219 TTCAATTTT-AGTTTAATTTTGAA
1 TTTAATTTTAAATTTAA-TTTAAA
1791242 TTTAA-TTTAAATTTAAT
1 TTTAATTTTAAATTTAAT
1791259 ATTATTATAA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
22 9 0.28
23 23 0.72
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTAATTTTAAATTTAATTTAAA
Found at i:1793286 original size:30 final size:28
Alignment explanation
Indices: 1793245--1793467 Score: 131
Period size: 30 Copynumber: 7.6 Consensus size: 28
1793235 AAAATTTTAG
*
1793245 AAAATTA-CATTTTGACCTCGAAATTTCC
1 AAAATTACCATTTT-ACCCCGAAATTTCC
*
1793273 AAAACTTACCATTTTACCCCTGAACTTTCC
1 AAAA-TTACCATTTTACCCC-GAAATTTCC
*
1793303 AGAATT-CCATTTTTGACCCCG--ATTTCACC
1 AAAATTACCA-TTTT-ACCCCGAAATTT--CC
*
1793332 AAAAATTACCATTTTACCCCCGAACTTTCC
1 -AAAATTACCATTTTA-CCCCGAAATTTCC
* * *
1793362 AAAATT-CCATTTTAACCC-TAGTTTCACC
1 AAAATTACCATTTTACCCCGAAATTT--CC
* *
1793390 AAAAATTACCGTTTTACCCCCAAACTTTCC
1 -AAAATTACCATTTTACCCCGAAA-TTTCC
*
1793420 AAAATT-CCATTTTTAACCTCG--ATTTCACC
1 AAAATTACCA-TTTT-ACCCCGAAATTT--CC
1793449 AAAAATTACCATTTTACCC
1 -AAAATTACCATTTTACCC
1793468 TAAACTTTCT
Statistics
Matches: 154, Mismatches: 17, Indels: 47
0.71 0.08 0.22
Matches are distributed among these distances:
26 4 0.03
27 9 0.06
28 20 0.13
29 44 0.29
30 64 0.42
31 7 0.05
32 6 0.04
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (28 bp):
AAAATTACCATTTTACCCCGAAATTTCC
Found at i:1793410 original size:58 final size:60
Alignment explanation
Indices: 1793271--1793554 Score: 368
Period size: 58 Copynumber: 4.8 Consensus size: 60
1793261 CTCGAAATTT
* * *
1793271 CCAAAACTTACCATTTTACCCCTGAACTTTCCAGAATTCCATTTTTGACCC-CGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCTCGATTTCA
* *
1793330 CCAAAAATTACCATTTTACCCCCGAACTTTCCAAAATTCCA-TTTTAACCCTAG-TTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCTCGATTTCA
* **
1793388 CCAAAAATTACCGTTTTACCCCCAAACTTTCCAAAATTCCATTTTTAA-CCTCGATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCTCGATTTCA
* * *
1793447 CCAAAAATTACCATTTTA-CCCTAAACTTTCTAGAATTCCA-TTTTAACCCT-GATTTCA
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCTCGATTTCA
* * * *
1793504 CTAAAAATCACCATTTTACCCTTGAACCTTCCAAAA-TCTCATTTTTAACCC
1 CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTC-CATTTTTAACCC
1793555 CAAATTTTCC
Statistics
Matches: 199, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
57 31 0.16
58 92 0.46
59 76 0.38
ACGTcount: A:0.32, C:0.30, G:0.04, T:0.34
Consensus pattern (60 bp):
CCAAAAATTACCATTTTACCCCTGAACTTTCCAAAATTCCATTTTTAACCCTCGATTTCA
Found at i:1797859 original size:30 final size:30
Alignment explanation
Indices: 1797823--1798005 Score: 119
Period size: 30 Copynumber: 6.2 Consensus size: 30
1797813 GAGAGTTTAG
*
1797823 GGTCAAAATGCGA-TTTTGGAAAAGTTTGAA
1 GGTCAAAATGCAATTTTTGG-AAAGTTTGAA
* *
1797853 GGTCAAAATGTAATTTTTGGAAAGTTT-AGG
1 GGTCAAAATGCAATTTTTGGAAAGTTTGA-A
* * *
1797883 GGTTAAAATGTAATTTTT-GAAAGTTCG-A
1 GGTCAAAATGCAATTTTTGGAAAGTTTGAA
* * * *
1797911 GATCAAAATGTAATCTTTGG-AAGTTTG-G
1 GGTCAAAATGCAATTTTTGGAAAGTTTGAA
** * *
1797939 GTGTCAAAATATAATTTTTGAAAAGTTTG-G
1 G-GTCAAAATGCAATTTTTGGAAAGTTTGAA
* * * *
1797969 GGTTCAAAATGTAATTTTTGAAAAGTTAGAG
1 GG-TCAAAATGCAATTTTTGGAAAGTTTGAA
1798000 GGTCAA
1 GGTCAA
1798006 CTGGGTAATA
Statistics
Matches: 128, Mismatches: 17, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
28 22 0.17
29 25 0.20
30 72 0.56
31 9 0.07
ACGTcount: A:0.36, C:0.05, G:0.24, T:0.36
Consensus pattern (30 bp):
GGTCAAAATGCAATTTTTGGAAAGTTTGAA
Found at i:1798359 original size:17 final size:17
Alignment explanation
Indices: 1798337--1798371 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
1798327 AAAAAAAAAC
1798337 TCTCTTCTCTCTTT-TTT
1 TCTCTTCT-TCTTTGTTT
1798354 TCTCTTCTTCTTTGTTT
1 TCTCTTCTTCTTTGTTT
1798371 T
1 T
1798372 TTTATGAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (17 bp):
TCTCTTCTTCTTTGTTT
Found at i:1799404 original size:28 final size:30
Alignment explanation
Indices: 1799359--1799423 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 30
1799349 ATGTAAATAT
*
1799359 TAAAATAACTATATAAAAATTTTCAATAAA
1 TAAAATAACTATATAAAAATTTTAAATAAA
* *
1799389 TAAAA-AA-TATATAAAATTTTTAAAT-AT
1 TAAAATAACTATATAAAAATTTTAAATAAA
1799416 TAAAATAA
1 TAAAATAA
1799424 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 6 0.19
28 18 0.58
29 2 0.06
30 5 0.16
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (30 bp):
TAAAATAACTATATAAAAATTTTAAATAAA
Found at i:1799420 original size:26 final size:28
Alignment explanation
Indices: 1799352--1799420 Score: 70
Period size: 28 Copynumber: 2.4 Consensus size: 28
1799342 TACTCTAATG
1799352 TAAATATTAAAATAACTATATAAAAA-TTT
1 TAAATATT-AAA-AACTATATAAAAATTTT
* * *
1799381 TCAATAAATAAAAAATATAT-AAAATTTT
1 TAAAT-ATTAAAAACTATATAAAAATTTT
1799409 TAAATATTAAAA
1 TAAATATTAAAA
1799421 TAAAATAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
27 10 0.30
28 14 0.42
29 7 0.21
30 2 0.06
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (28 bp):
TAAATATTAAAAACTATATAAAAATTTT
Found at i:1801363 original size:8 final size:8
Alignment explanation
Indices: 1801316--1801363 Score: 51
Period size: 8 Copynumber: 5.6 Consensus size: 8
1801306 AATAAAGAAA
1801316 AAAAATTAT
1 AAAAATT-T
1801325 AAAAATTT
1 AAAAATTT
*
1801333 TAAAATTT
1 AAAAATTT
*
1801341 AAAATTCATT
1 AAAAAT--TT
1801351 AAAAATTT
1 AAAAATTT
1801359 AAAAA
1 AAAAA
1801364 ACCCCAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
8 19 0.58
9 7 0.21
10 7 0.21
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (8 bp):
AAAAATTT
Found at i:1801766 original size:20 final size:19
Alignment explanation
Indices: 1801721--1801772 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
1801711 CAAGAAAACC
1801721 CAAAAATCTAAATATTTTT
1 CAAAAATCTAAATATTTTT
1801740 CATAAAATTCTAAA-ATTTTCT
1 CA-AAAA-TCTAAATATTTT-T
* *
1801761 GAAAAACCTAAA
1 CAAAAATCTAAA
1801773 ACTTAGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 7 0.25
20 13 0.46
21 8 0.29
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (19 bp):
CAAAAATCTAAATATTTTT
Found at i:1805151 original size:31 final size:30
Alignment explanation
Indices: 1805121--1805190 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 30
1805111 AAGGGTTAAT
1805121 ATGTT-ATTTGGTACCTGAGTTTGGTTTTA
1 ATGTTAATTTGGTACCTGAGTTTGGTTTTA
* * *
1805150 ATGTTCAATTTGGTACTTGATTTTGGTTTCA
1 ATGTT-AATTTGGTACCTGAGTTTGGTTTTA
1805181 ATGTTAATTT
1 ATGTTAATTT
1805191 TGGATCGGGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.14
30 5 0.14
31 26 0.72
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (30 bp):
ATGTTAATTTGGTACCTGAGTTTGGTTTTA
Found at i:1807357 original size:19 final size:19
Alignment explanation
Indices: 1807318--1807355 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
1807308 GACGAGTCTA
1807318 ATTAAAAATACAACACTTT
1 ATTAAAAATACAACACTTT
1807337 ATTAATAAATCACAA-ACTT
1 ATTAA-AAAT-ACAACACTT
1807356 ATATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 5 0.29
20 8 0.47
21 4 0.24
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAAAATACAACACTTT
Found at i:1817488 original size:2 final size:2
Alignment explanation
Indices: 1817481--1817513 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1817471 TTGAATCATC
1817481 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1817514 TGGCTTAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1818777 original size:56 final size:54
Alignment explanation
Indices: 1818685--1818853 Score: 311
Period size: 54 Copynumber: 3.1 Consensus size: 54
1818675 CGGATTGCAG
*
1818685 TTGCACCTCTTTGTGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1 TTGCACCTCTTTATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1818739 TTGCACCTCTTTATATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1 TTGCACCTC-TT-TATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1818795 TTGCACCTCTTTATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1 TTGCACCTCTTTATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
1818849 TTGCA
1 TTGCA
1818854 TTTGCAGCTC
Statistics
Matches: 112, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
54 57 0.51
55 4 0.04
56 51 0.46
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (54 bp):
TTGCACCTCTTTATGAACCCATAAATACTAGTTCCCAAATGGTTGAAAATGGGA
Found at i:1826078 original size:78 final size:78
Alignment explanation
Indices: 1825948--1826140 Score: 316
Period size: 78 Copynumber: 2.5 Consensus size: 78
1825938 CTTATAATGG
*
1825948 TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGATCAAGATGTGAGAAATCAAAATCACTTG
1 TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGATCAAGAGGTGAGAAATCAAAATCACTTG
*
1826013 G-GGGCTGAACACT
66 GAAGG-TGAACACT
*
1826026 TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGATCAAGAGGTGGGAAATCAAAATCACTTG
1 TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGATCAAGAGGTGAGAAATCAAAATCACTTG
1826091 GAAGGTGAACACT
66 GAAGGTGAACACT
* * *
1826104 TGGTGGCAACCCAGAGTCAGGATCTTGAATGACCTGA
1 TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGA
1826141 ATTGGATTAC
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
78 106 0.98
79 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (78 bp):
TGGTGGCAACCCAAAGTCAGGATCTTGATTGAACTGATCAAGAGGTGAGAAATCAAAATCACTTG
GAAGGTGAACACT
Found at i:1826476 original size:81 final size:81
Alignment explanation
Indices: 1826335--1826737 Score: 680
Period size: 81 Copynumber: 5.0 Consensus size: 81
1826325 TCCCATTTTC
* * * * * * *
1826335 AACCATTTGAGTTCCATTGTATGGTAGAATTGCACCTGTATCAGCTTCAGCTTCACCTTCCTCTT
1 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1826400 GATGACCTTCTTGTTG
66 GATGACCTTCTTGTTG
* * *
1826416 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACCTGTATGAGCTTCAGTTTCAGCTTCCTCTT
1 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
*
1826481 GATGAACTTCTTGTTG
66 GATGACCTTCTTGTTG
1826497 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1826562 GATGACCTTCTTGTTG
66 GATGACCTTCTTGTTG
* *
1826578 AACCATTTAGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGTTTCAGCTTCCTCTT
1 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1826643 GATGACCTTCTTGTTG
66 GATGACCTTCTTGTTG
*
1826659 AACCATTTGAGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1 AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
1826724 GATGACCTTCTTGT
66 GATGACCTTCTTGT
1826738 AAGGTTTCAC
Statistics
Matches: 304, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 304 1.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (81 bp):
AACCATTTGGGTTTCATCGTAAGGTACAATTGCACTTGTATCAGCTTCAGCTTCAGCTTCCTCTT
GATGACCTTCTTGTTG
Done.