Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 59 of 163
Found at i:14904609 original size:7 final size:6
Alignment explanation
Indices: 14904591--14904658 Score: 52
Period size: 6 Copynumber: 11.8 Consensus size: 6
14904581 TAATTTTTAA
* * * * *
14904591 TTAAAT TTAAAT TTAAA- ATGAAC TTAAAT TCAAA- ATAAAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT
* *
14904637 TTATA- TTAAAT TCAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAA
14904659 ATAAATTAAA
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
5 10 0.22
6 36 0.78
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (6 bp):
TTAAAT
Found at i:14904617 original size:17 final size:17
Alignment explanation
Indices: 14904592--14904668 Score: 77
Period size: 17 Copynumber: 4.6 Consensus size: 17
14904582 AATTTTTAAT
*
14904592 TAAATTTAAATTTAAAA
1 TAAACTTAAATTTAAAA
* *
14904609 TGAACTTAAATTCAAAA
1 TAAACTTAAATTTAAAA
* * *
14904626 TAAATTTAAATTTATAT
1 TAAACTTAAATTTAAAA
14904643 TAAA-TTCAAATTTAAAA
1 TAAACTT-AAATTTAAAA
14904660 TAAA-TTAAA
1 TAAACTTAAA
14904669 AATAGGTTCA
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
16 5 0.10
17 44 0.90
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (17 bp):
TAAACTTAAATTTAAAA
Found at i:14904629 original size:28 final size:28
Alignment explanation
Indices: 14904598--14904652 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
14904588 TAATTAAATT
14904598 TAAATTTAAAATGA-ACTTAAATTCAAAA
1 TAAATTTAAAATGATA-TTAAATTCAAAA
* *
14904626 TAAATTTAAATTTATATTAAATTCAAA
1 TAAATTTAAAATGATATTAAATTCAAA
14904653 TTTAAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (28 bp):
TAAATTTAAAATGATATTAAATTCAAAA
Found at i:14904635 original size:34 final size:34
Alignment explanation
Indices: 14904592--14904665 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
14904582 AATTTTTAAT
*
14904592 TAAATTTAAATTTAAAATGAACTT-AAATTCAAAA
1 TAAATTTAAATTT-AAATGAAATTCAAATTCAAAA
* * *
14904626 TAAATTTAAATTTATATTAAATTCAAATTTAAAA
1 TAAATTTAAATTTAAATGAAATTCAAATTCAAAA
14904660 TAAATT
1 TAAATT
14904666 AAAAATAGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 7 0.20
34 28 0.80
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (34 bp):
TAAATTTAAATTTAAATGAAATTCAAATTCAAAA
Found at i:14905220 original size:26 final size:26
Alignment explanation
Indices: 14905184--14905333 Score: 183
Period size: 26 Copynumber: 5.8 Consensus size: 26
14905174 AGAAAAGAGG
*
14905184 TGATTATATAGCAGGCCTTGAGTCGA
1 TGATTATATAGCAGGCCTTGAGCCGA
* * *
14905210 TGATTATATAGTAGGCCTTAAGCTGA
1 TGATTATATAGCAGGCCTTGAGCCGA
**
14905236 TGATTATATAGCAATCCTTGAGCCGA
1 TGATTATATAGCAGGCCTTGAGCCGA
*
14905262 TGATTATATAGCAGGCCTTGAGCCGG
1 TGATTATATAGCAGGCCTTGAGCCGA
* * * *
14905288 TGATTAAATAGGAGGCTTTGAGCCGG
1 TGATTATATAGCAGGCCTTGAGCCGA
* *
14905314 TGATTAAATAACAGGCCTTG
1 TGATTATATAGCAGGCCTTG
14905334 GGTCAGTGAC
Statistics
Matches: 106, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
TGATTATATAGCAGGCCTTGAGCCGA
Found at i:14906776 original size:39 final size:39
Alignment explanation
Indices: 14906722--14906796 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
14906712 GTAGTTAGCA
14906722 ATTTGCAGCCACTTTGAACTGTATAATTTCCAAACTGCC
1 ATTTGCAGCCACTTTGAACTGTATAATTTCCAAACTGCC
14906761 ATTTGCAGCCACTTTGAACTGTATAATTTCCAAACT
1 ATTTGCAGCCACTTTGAACTGTATAATTTCCAAACT
14906797 ATCACCCTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (39 bp):
ATTTGCAGCCACTTTGAACTGTATAATTTCCAAACTGCC
Found at i:14912718 original size:18 final size:18
Alignment explanation
Indices: 14912695--14912768 Score: 78
Period size: 18 Copynumber: 4.1 Consensus size: 18
14912685 ATAAATTCTT
14912695 AAAAATTAAAAAGTTAAA
1 AAAAATTAAAAAGTTAAA
*
14912713 AAAAATAAAAAAG-TAAA
1 AAAAATTAAAAAGTTAAA
* *
14912730 AAAATTTAAAAAGATTTAA
1 AAAAATTAAAAAG-TTAAA
** *
14912749 AAATTTTAAAAAATTAAA
1 AAAAATTAAAAAGTTAAA
14912767 AA
1 AA
14912769 TTATAATAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
17 15 0.32
18 18 0.38
19 14 0.30
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (18 bp):
AAAAATTAAAAAGTTAAA
Found at i:14912740 original size:9 final size:9
Alignment explanation
Indices: 14912702--14912768 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 9
14912692 CTTAAAAATT
*
14912702 AAAAAGTTA
1 AAAAATTTA
**
14912711 AAAAAAATA
1 AAAAATTTA
* *
14912720 AAAAAGTAA
1 AAAAATTTA
14912729 AAAAATTTA
1 AAAAATTTA
14912738 AAAAGATTTA
1 AAAA-ATTTA
*
14912748 AAAATTTTA
1 AAAAATTTA
14912757 AAAAA-TTA
1 AAAAATTTA
14912765 AAAA
1 AAAA
14912769 TTATAATAAC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
8 7 0.15
9 32 0.67
10 9 0.19
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (9 bp):
AAAAATTTA
Found at i:14914065 original size:23 final size:25
Alignment explanation
Indices: 14914030--14914094 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 25
14914020 AAATAAATTA
*
14914030 TTTTATTCATTTAATATTT-TGTT-T
1 TTTTAATCATTTAA-ATTTATGTTAT
14914054 TTTTAATC-TTTAAATTTATGTTAT
1 TTTTAATCATTTAAATTTATGTTAT
*
14914078 TTGTTAAACCATTTAAA
1 TT-TT-AATCATTTAAA
14914095 AATAATAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
22 4 0.12
23 9 0.26
24 10 0.29
25 2 0.06
26 3 0.09
27 6 0.18
ACGTcount: A:0.29, C:0.06, G:0.05, T:0.60
Consensus pattern (25 bp):
TTTTAATCATTTAAATTTATGTTAT
Found at i:14914172 original size:26 final size:27
Alignment explanation
Indices: 14914125--14914178 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
14914115 TTGTTATTAA
**
14914125 AAAAATAAAAAAAAATTTAAAAT-ATT
1 AAAAATAAAAAAAAATACAAAATCATT
*
14914151 AAAAATTAAAAAAAATACAAAATCATT
1 AAAAATAAAAAAAAATACAAAATCATT
14914178 A
1 A
14914179 TCGAGTCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (27 bp):
AAAAATAAAAAAAAATACAAAATCATT
Found at i:14922079 original size:20 final size:20
Alignment explanation
Indices: 14922033--14922080 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
14922023 ATTTATTAAG
*
14922033 AAAATTATTTTATATTAAAAT
1 AAAATT-TTTTAAATTAAAAT
** *
14922054 TTAATTTTTTAAATTAATAT
1 AAAATTTTTTAAATTAAAAT
14922074 AAAATTT
1 AAAATTT
14922081 ATTATTGATG
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AAAATTTTTTAAATTAAAAT
Found at i:14922448 original size:15 final size:15
Alignment explanation
Indices: 14922418--14922477 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
14922408 GTAAAATAAT
*
14922418 AATTAAGTACGGAAA
1 AATTAAGTACTGAAA
* *
14922433 ATTTAAGTACTAAAAA
1 AATTAAGTACT-GAAA
*
14922449 AATTAAGTAATGAAA
1 AATTAAGTACTGAAA
* *
14922464 ACTTAAGTATTGAA
1 AATTAAGTACTGAA
14922478 TTTGAATTAT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
15 24 0.67
16 12 0.33
ACGTcount: A:0.53, C:0.05, G:0.13, T:0.28
Consensus pattern (15 bp):
AATTAAGTACTGAAA
Found at i:14923379 original size:30 final size:29
Alignment explanation
Indices: 14923333--14923402 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
14923323 TTTCACTATT
*
14923333 TTTATAAT--TTTTA-ATTTTATATTA-A
1 TTTATAATAATTTTACAATTTATATTACA
*
14923358 TTTATAATATATTTTACAATTTATTTTACA
1 TTTATAATA-ATTTTACAATTTATATTACA
*
14923388 TTTTTAATAATTTTA
1 TTTATAATAATTTTA
14923403 ATGATTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
25 8 0.22
28 5 0.14
29 15 0.41
30 9 0.24
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTATAATAATTTTACAATTTATATTACA
Found at i:14923491 original size:20 final size:20
Alignment explanation
Indices: 14923468--14923509 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14923458 CACGTCATTG
*
14923468 ATCAACGTGCTATATCATCA
1 ATCAACGTGCCATATCATCA
* *
14923488 ATCAATGTGCCATGTCATCA
1 ATCAACGTGCCATATCATCA
14923508 AT
1 AT
14923510 GATAATAGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.31
Consensus pattern (20 bp):
ATCAACGTGCCATATCATCA
Found at i:14924369 original size:17 final size:17
Alignment explanation
Indices: 14924330--14924371 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
14924320 AAAAATATTT
**
14924330 TTAAAAATATATTAATA
1 TTAAAAATATAAGAATA
14924347 --AAAAATATAAGAATA
1 TTAAAAATATAAGAATA
14924362 TTAAAAATAT
1 TTAAAAATAT
14924372 TTTTTATTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 13 0.62
17 8 0.38
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
TTAAAAATATAAGAATA
Found at i:14931371 original size:14 final size:15
Alignment explanation
Indices: 14931345--14931373 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14931335 TCATTCATTC
14931345 TCTTAACTTTTTAGT
1 TCTTAACTTTTTAGT
14931360 TCTTAA-TTTTTAGT
1 TCTTAACTTTTTAGT
14931374 AATTTCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (15 bp):
TCTTAACTTTTTAGT
Found at i:14932624 original size:27 final size:27
Alignment explanation
Indices: 14932585--14932653 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
14932575 TTTCCTTCAC
* *
14932585 GGCAAACTTTGAACGGAATACCGATGT
1 GGCAAACTCTGAAAGGAATACCGATGT
** *
14932612 GGCAAACTCTGAAAGGAATGTCTATGT
1 GGCAAACTCTGAAAGGAATACCGATGT
*
14932639 GGCGAACTCTGAAAG
1 GGCAAACTCTGAAAG
14932654 AAATGCCCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (27 bp):
GGCAAACTCTGAAAGGAATACCGATGT
Found at i:14933515 original size:13 final size:13
Alignment explanation
Indices: 14933497--14933530 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14933487 ATGTATTGCC
14933497 ATTGTATTTACTT
1 ATTGTATTTACTT
*
14933510 ATTGTATATACTT
1 ATTGTATTTACTT
14933523 A-TGTATTT
1 ATTGTATTT
14933531 TAGTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (13 bp):
ATTGTATTTACTT
Found at i:14935175 original size:20 final size:20
Alignment explanation
Indices: 14935147--14935200 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
14935137 TTTAGCCATT
*
14935147 TTTTATTTTTATTTTAATAG
1 TTTTATTTTTAATTTAATAG
*
14935167 TTTTGTTTTTAATTTAAT--
1 TTTTATTTTTAATTTAATAG
14935185 TTTTATATTTTAATTT
1 TTTTAT-TTTTAATTT
14935201 TCCATTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 5 0.17
19 9 0.30
20 16 0.53
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (20 bp):
TTTTATTTTTAATTTAATAG
Found at i:14935186 original size:26 final size:25
Alignment explanation
Indices: 14935146--14935195 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
14935136 ATTTAGCCAT
* *
14935146 TTTTTATTTTTATTTTAATAGTTTTG
1 TTTTTAATTTAATTTTAATA-TTTTG
*
14935172 TTTTTAATTTAATTTTTATATTTT
1 TTTTTAATTTAATTTTAATATTTT
14935196 AATTTTCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTTTAATTTAATTTTAATATTTTG
Found at i:14942199 original size:7 final size:7
Alignment explanation
Indices: 14942187--14942213 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14942177 TTTATTTTAT
14942187 TTTTCTA
1 TTTTCTA
14942194 TTTTCTA
1 TTTTCTA
14942201 TTTTCTA
1 TTTTCTA
14942208 TTTTCT
1 TTTTCT
14942214 TTTGGTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.11, C:0.15, G:0.00, T:0.74
Consensus pattern (7 bp):
TTTTCTA
Found at i:14942288 original size:15 final size:17
Alignment explanation
Indices: 14942243--14942283 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
14942233 AACCAAAGTG
* *
14942243 ATTTCATTTAGTTTTAT
1 ATTTTATTTATTTTTAT
14942260 ATTTTATTTATTTTTAT
1 ATTTTATTTATTTTTAT
14942277 -TTTTATT
1 ATTTTATT
14942284 GTTTTGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (17 bp):
ATTTTATTTATTTTTAT
Found at i:14946069 original size:19 final size:19
Alignment explanation
Indices: 14946045--14946081 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14946035 CAACAAAAAA
*
14946045 TCAACGGTTAACGGTCAAG
1 TCAACGGTTAACGATCAAG
14946064 TCAACGGTTAACGATCAA
1 TCAACGGTTAACGATCAA
14946082 TGGAAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (19 bp):
TCAACGGTTAACGATCAAG
Found at i:14948098 original size:17 final size:18
Alignment explanation
Indices: 14948064--14948108 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
14948054 AAAATAGATT
14948064 CAAAAGATAAATTAAATAA
1 CAAAA-ATAAATTAAATAA
14948083 CAAAAATAAA-TAAATAA
1 CAAAAATAAATTAAATAA
*
14948100 GAAAAATAA
1 CAAAAATAA
14948109 GAAAACGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 15 0.60
18 5 0.20
19 5 0.20
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (18 bp):
CAAAAATAAATTAAATAA
Found at i:14951464 original size:19 final size:19
Alignment explanation
Indices: 14951423--14951466 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
14951413 TTAAAGCATT
*
14951423 TTAATTAAATAATATGATA
1 TTAATTAAATAATATGACA
*
14951442 TTAATTTAA-AATATGACA
1 TTAATTAAATAATATGACA
14951460 CTTAATT
1 -TTAATT
14951467 GAATTTAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (19 bp):
TTAATTAAATAATATGACA
Found at i:14954377 original size:6 final size:6
Alignment explanation
Indices: 14954368--14954393 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14954358 GGAGGATGAG
14954368 GATGGA GATGGA GATGGA GATGGA GA
1 GATGGA GATGGA GATGGA GATGGA GA
14954394 AGGCTTTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.50, T:0.15
Consensus pattern (6 bp):
GATGGA
Found at i:14966928 original size:18 final size:19
Alignment explanation
Indices: 14966891--14966929 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
14966881 GTGAAAAACC
*
14966891 AACAAGAAAATAGTAACAA
1 AACAAGAAAATAGCAACAA
*
14966910 AACAATAAAA-AGCAACAA
1 AACAAGAAAATAGCAACAA
14966928 AA
1 AA
14966930 AAACAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.72, C:0.13, G:0.08, T:0.08
Consensus pattern (19 bp):
AACAAGAAAATAGCAACAA
Found at i:14967195 original size:77 final size:77
Alignment explanation
Indices: 14967046--14967197 Score: 173
Period size: 77 Copynumber: 2.0 Consensus size: 77
14967036 TTTTTGCCTA
* * * *
14967046 AGCCCATTTTCAGGCTTATATTTTTACCTAAACCCTCCCACTTTTCAAGTGTGCCTCTAGGCCAA
1 AGCCCATTTTCAGGCCTATATTTTTACCCAAACCCTCCCACTTTTCAAGTGAGCCTCTAGACCAA
*
14967111 GTCGAGTGGCTC
66 GTAGAGTGGCTC
* * ** *
14967123 AGCCCATTTTC-GAGCCTATATTTTTACCCAAATCCTCCCGCTTTTTGAGTGAGCCT-TTGAACC
1 AGCCCATTTTCAG-GCCTATATTTTTACCCAAACCCTCCCACTTTTCAAGTGAGCCTCTAG-ACC
*
14967186 AGGTAGAGTGGC
64 AAGTAGAGTGGC
14967198 CCAACCTATG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
76 3 0.05
77 59 0.95
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.32
Consensus pattern (77 bp):
AGCCCATTTTCAGGCCTATATTTTTACCCAAACCCTCCCACTTTTCAAGTGAGCCTCTAGACCAA
GTAGAGTGGCTC
Found at i:14968781 original size:30 final size:27
Alignment explanation
Indices: 14968726--14968783 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 27
14968716 CTATGTTATA
14968726 TGTATTACTTTGAATTTTATAATTTTT
1 TGTATTACTTTGAATTTTATAATTTTT
* *
14968753 TGTATTTACTTTTGCAATTTTTTTATTTTT
1 TGTA-TTAC-TTTG-AATTTTATAATTTTT
14968783 T
1 T
14968784 ATGCAAGCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.15
28 4 0.15
29 4 0.15
30 14 0.54
ACGTcount: A:0.21, C:0.05, G:0.07, T:0.67
Consensus pattern (27 bp):
TGTATTACTTTGAATTTTATAATTTTT
Found at i:14968788 original size:20 final size:21
Alignment explanation
Indices: 14968746--14968789 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
14968736 TGAATTTTAT
14968746 AATTTTTTGTATTTACTTTTGC
1 AATTTTTTGTATTTA-TTTTGC
14968768 AATTTTTT-TATTT-TTTATGC
1 AATTTTTTGTATTTATTT-TGC
14968788 AA
1 AA
14968790 GCGAACTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 3 0.14
20 5 0.24
21 5 0.24
22 8 0.38
ACGTcount: A:0.23, C:0.07, G:0.07, T:0.64
Consensus pattern (21 bp):
AATTTTTTGTATTTATTTTGC
Found at i:14972046 original size:434 final size:433
Alignment explanation
Indices: 14971239--14972107 Score: 1323
Period size: 434 Copynumber: 2.0 Consensus size: 433
14971229 AATCTATCTT
* * *
14971239 AGAGTGTTCCCTCAATGAGTAGTACTTCTTCAAGAATCTATCTTGGTGGGGGATAATGAAGAGTG
1 AGAGTGTTCCCTCAATGAGTAGTACTTCTTCAAGAATCTATCTTGATAGAGGATAATGAAGAGTG
* ** *
14971304 CTACGAATCTTTATGCTTGCTATTTTCTTTGGTGAGGATTTGAAGGATCAAGTAGTTTTTTTATC
66 CTACGAATCCTTATGCTTGCTATTTTCTTTGGCAAGGATTTGAAGGATCAACTAGTTTTTTTATC
* * * * *
14971369 TAGATGAAGTAACTTGAAAGATGTTCAAATGGTTTCCTTTGAGCCAGATTGGGGGTCCACATGTG
131 TAGATGAAGTAACCTAAAAGATGTACAAATGGTTTCCTTTGAGCCAAATTGAGGGTCCACATGTG
* * * * * * *
14971434 GTGCATTGATAGACTTATTGAAGATTATTAATTGTCTAGAATATGAGCATAATTTCGTGCACCGA
196 GTGCATTGATAGACTTATGGAAAACTAATAATTGTCTAGAATATAAGCATAATTTCGTGCAACAA
*
14971499 AAATTAGGCAGATCTTTAAGATATCAAGAGCTCCATCTGCAAAATTTAACTACCAAAAGATAAGT
261 AAATTAGGCAGATCTTTAAGACATCAAGAGCTCCATCTGCAAAATTTAACTACCAAAAGATAAGT
* * * * * **
14971564 CTTAAAGAAATTAGTTGCTAAAGCTTCCTCAAGGGTAGCCATTTTATAGGAAAAAGGGTAGCCAT
326 CTTAAAAAAATTAGTCGCTAAAGCTTCCTCAACGGTAACCACTTTATAGGAAAAAAAGTAGCCAT
14971629 TTTATATGTTTCTGATGGTTCAATTGCTCATATTCTATCACAA
391 TTTATATGTTTCTGATGGTTCAATTGCTCATATTCTATCACAA
14971672 AGAGTGTTCCCTCAATGAGTAGTACTTCTTCAAGAATCTATCTTGATAGAGGATAATGAAGAGTG
1 AGAGTGTTCCCTCAATGAGTAGTACTTCTTCAAGAATCTATCTTGATAGAGGATAATGAAGAGTG
*
14971737 CTACGAATCCTTATGCTCT-CTATTTTTTTTGGCAAGGATTTGTAA-GATCAACTAGTTTTTTTC
66 CTACGAATCCTTATGCT-TGCTATTTTCTTTGGCAAGGATTTG-AAGGATCAACTAGTTTTTTT-
** *
14971800 ATCCT-GATGAAGTAACCTAAAAGATGTACGGATGGTTTCCTTTGAGCCAAATTGAGGGTCCACT
128 AT-CTAGATGAAGTAACCTAAAAGATGTACAAATGGTTTCCTTTGAGCCAAATTGAGGGTCCACA
* *
14971864 TGTGGTGCATTGATAGACTTATGGAAAACTAATAATTGTCTGGAATATAAGCATAATTTTGTGCA
192 TGTGGTGCATTGATAGACTTATGGAAAACTAATAATTGTCTAGAATATAAGCATAATTTCGTGCA
* * *
14971929 ACAAAAATTGGGCATG-TCTTTAAGACATCAAGAGCTCCATCTGCAAAGTTTAACTACTAAAAGA
257 ACAAAAATTAGGCA-GATCTTTAAGACATCAAGAGCTCCATCTGCAAAATTTAACTACCAAAAGA
14971993 TAAGTCTTAAAAAAATTAGTCGCTAAAGCTTCCTCAACGGTAACCACTTTATAGGAAAAAAAGTA
321 TAAGTCTTAAAAAAATTAGTCGCTAAAGCTTCCTCAACGGTAACCACTTTATAGGAAAAAAAGTA
* *
14972058 GCCATTTTATATGTTTTTGATGGTTCAATTGCTCATATTTTATCACAA
386 GCCATTTTATATGTTTCTGATGGTTCAATTGCTCATATTCTATCACAA
14972106 AG
1 AG
14972108 TTGAAGCTCT
Statistics
Matches: 393, Mismatches: 38, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
433 114 0.29
434 276 0.70
435 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (433 bp):
AGAGTGTTCCCTCAATGAGTAGTACTTCTTCAAGAATCTATCTTGATAGAGGATAATGAAGAGTG
CTACGAATCCTTATGCTTGCTATTTTCTTTGGCAAGGATTTGAAGGATCAACTAGTTTTTTTATC
TAGATGAAGTAACCTAAAAGATGTACAAATGGTTTCCTTTGAGCCAAATTGAGGGTCCACATGTG
GTGCATTGATAGACTTATGGAAAACTAATAATTGTCTAGAATATAAGCATAATTTCGTGCAACAA
AAATTAGGCAGATCTTTAAGACATCAAGAGCTCCATCTGCAAAATTTAACTACCAAAAGATAAGT
CTTAAAAAAATTAGTCGCTAAAGCTTCCTCAACGGTAACCACTTTATAGGAAAAAAAGTAGCCAT
TTTATATGTTTCTGATGGTTCAATTGCTCATATTCTATCACAA
Found at i:14997218 original size:37 final size:37
Alignment explanation
Indices: 14997125--14997222 Score: 108
Period size: 38 Copynumber: 2.6 Consensus size: 37
14997115 ATTTCTGAAA
*
14997125 TGCACCCAAGACTGTCGCTGCATAAATATTCTTCAAAT
1 TGCACCC-AGAATGTCGCTGCATAAATATTCTTCAAAT
* ** * *
14997163 TGCATCCAGAACAATCGCTGCATAAGTATTC-TCCAAT
1 TGCACCCAGAA-TGTCGCTGCATAAATATTCTTCAAAT
14997200 TGCACCCAGGAATGTCGCTGCAT
1 TGCACCCA-GAATGTCGCTGCAT
14997223 GAACATGTCC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 24 0.49
38 25 0.51
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (37 bp):
TGCACCCAGAATGTCGCTGCATAAATATTCTTCAAAT
Found at i:15003377 original size:23 final size:23
Alignment explanation
Indices: 15003334--15003420 Score: 95
Period size: 23 Copynumber: 3.7 Consensus size: 23
15003324 TAATGTTCAC
**
15003334 GAACATGTTCATTTAAC-TTAATT
1 GAACATGTTCA-CGAACATTAATT
* *
15003357 GAACATGTTCACGGACATTAATC
1 GAACATGTTCACGAACATTAATT
*
15003380 GAACATGTTCATGAACATATAATT
1 GAACATGTTCACGAACAT-TAATT
*
15003404 GAACACGTTCACGAACA
1 GAACATGTTCACGAACA
15003421 ATGTTAATGA
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
22 2 0.04
23 32 0.60
24 19 0.36
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (23 bp):
GAACATGTTCACGAACATTAATT
Found at i:15003542 original size:12 final size:12
Alignment explanation
Indices: 15003515--15003573 Score: 75
Period size: 12 Copynumber: 5.0 Consensus size: 12
15003505 TCATTAATAA
15003515 ATAAACGAGC-T
1 ATAAACGAGCTT
15003526 ATAAACGAGCTT
1 ATAAACGAGCTT
**
15003538 ATAAACGAGCCA
1 ATAAACGAGCTT
15003550 ATAAACGAGCTT
1 ATAAACGAGCTT
* *
15003562 TTAAATGAGCTT
1 ATAAACGAGCTT
15003574 GTTCGTGAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
11 10 0.24
12 31 0.76
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (12 bp):
ATAAACGAGCTT
Found at i:15010228 original size:27 final size:27
Alignment explanation
Indices: 15010197--15010256 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
15010187 AAATATTAAA
* *
15010197 TAAAATTTCTCA-AATTTTTACTAGGGG
1 TAAAATTTATCATAA-TTTTACTAGGAG
*
15010224 TAAAA-GTATCATAATTTTACTAGGAG
1 TAAAATTTATCATAATTTTACTAGGAG
15010250 TAAAATT
1 TAAAATT
15010257 GAGATGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (27 bp):
TAAAATTTATCATAATTTTACTAGGAG
Found at i:15014736 original size:17 final size:17
Alignment explanation
Indices: 15014714--15014747 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
15014704 CTTATTGTTT
* *
15014714 ACGTTTTATCTTTATCA
1 ACGTTTCATCTTCATCA
15014731 ACGTTTCATCTTCATCA
1 ACGTTTCATCTTCATCA
15014748 GTAGTTTGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.06, T:0.47
Consensus pattern (17 bp):
ACGTTTCATCTTCATCA
Found at i:15014788 original size:23 final size:23
Alignment explanation
Indices: 15014756--15014799 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
15014746 CAGTAGTTTG
15014756 ACAGAAAG-AAAAAAGAAAAATT
1 ACAGAAAGAAAAAAAGAAAAATT
15014778 ACAGACAAGAAAAAAAGAAAAA
1 ACAGA-AAGAAAAAAAGAAAAA
15014800 GGCTTTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 5 0.25
23 3 0.15
24 12 0.60
ACGTcount: A:0.75, C:0.07, G:0.14, T:0.05
Consensus pattern (23 bp):
ACAGAAAGAAAAAAAGAAAAATT
Found at i:15018786 original size:40 final size:40
Alignment explanation
Indices: 15018720--15019301 Score: 381
Period size: 40 Copynumber: 14.8 Consensus size: 40
15018710 AGGATGATAG
* * * *
15018720 CTTCAATTTGCCC-CATTATCGGGGTAAGAGAATGGTGTGT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGGTGTGT
**
15018760 CTTCAATCTGCCCTCTGATTAAGGTAAGAGATTGGAT-TGT
1 CTTCAATCTGCCCTCTGATCGAGGTAAGAGATTGG-TGTGT
* * * * *
15018800 CTTCAATCTGCCTTCTAATTC-AGGTGAGAGATTAG-ATG-
1 CTTCAATCTGCCCTCTGA-TCGAGGTAAGAGATTGGTGTGT
* *
15018838 CTTTAA-CTG-CCTCATGATCGGGGTAAGAGATTGGAT-TGT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGG-TGTGT
* * *
15018877 CTTCAATCTGCCTTCTAATTC-AGGTAAGAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGA-TCGAGGTAAGAGATTGGTGTGT
* * * *
15018915 ATTCAA-CTGCCC-CATGATCGGGGTAAGAGATCGGTTTGT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGGTGTGT
* * * *
15018954 CTTCAATTTGCCTTCTAATTC-AGGTAAGAGATTGG-ATG-
1 CTTCAATCTGCCCTCTGA-TCGAGGTAAGAGATTGGTGTGT
* *
15018992 CTTCAA-CTGCCC-CATGATCGGGGTAAGATATTGGTGTGT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGGTGTGT
* ** * * *
15019031 CTTCAATCTGCCTTCTGATTAAGGTAAAAGATTAG-AT-T
1 CTTCAATCTGCCCTCTGATCGAGGTAAGAGATTGGTGTGT
* * * * * * *
15019069 CTTCAATTTACCTTCTGATCAAGGTAAAAGATTAG-ATG-
1 CTTCAATCTGCCCTCTGATCGAGGTAAGAGATTGGTGTGT
* *
15019107 CTTCAATCTGCCC-CATGATCAAGGTATGAGATTGGTGTGT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGGTGTGT
* * *
15019147 CTTCAATGTGCCC-CATGATCGGGGTAAGAGATTGGTGTAT
1 CTTCAATCTGCCCTC-TGATCGAGGTAAGAGATTGGTGTGT
* * * *
15019187 TTTTAATCTGTCCC-ATGATCGGGGTAAGAGATTGGTGTGT
1 CTTCAATCTG-CCCTCTGATCGAGGTAAGAGATTGGTGTGT
* * *
15019227 CTTCAATCTGCCCTATGATCGGGGTAAGAGATTGGTGATGA
1 CTTCAATCTGCCCTCTGATCGAGGTAAGAGATTGGTG-TGT
15019268 CTTCAATCTGCCC-CATGATCG-GAGTAAGAGATTG
1 CTTCAATCTGCCCTC-TGATCGAG-GTAAGAGATTG
15019302 ATTTTACTGC
Statistics
Matches: 435, Mismatches: 72, Indels: 69
0.76 0.12 0.12
Matches are distributed among these distances:
36 11 0.03
37 54 0.12
38 84 0.19
39 28 0.06
40 211 0.49
41 47 0.11
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (40 bp):
CTTCAATCTGCCCTCTGATCGAGGTAAGAGATTGGTGTGT
Found at i:15018868 original size:77 final size:77
Alignment explanation
Indices: 15018782--15019074 Score: 444
Period size: 77 Copynumber: 3.8 Consensus size: 77
15018772 CTCTGATTAA
* *
15018782 GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTGAGAGATTAGATGCTTTAACTG
1 GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTAGATGCTTCAACTG
*
15018847 CCTCATGATCGG
66 CCCCATGATCGG
* *
15018859 GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTGGATGATTCAACTG
1 GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTAGATGCTTCAACTG
15018924 CCCCATGATCGG
66 CCCCATGATCGG
* * * *
15018936 GGTAAGAGATCGGTTTGTCTTCAATTTGCCTTCTAATTCAGGTAAGAGATTGGATGCTTCAACTG
1 GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTAGATGCTTCAACTG
15019001 CCCCATGATCGG
66 CCCCATGATCGG
* * * * *
15019013 GGTAAGATATTGG-TGTGTCTTCAATCTGCCTTCTGATTAAGGTAAAAGATTAGATTCTTCAA
1 GGTAAGAGATTGGAT-TGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTAGATGCTTCAA
15019075 TTTACCTTCT
Statistics
Matches: 198, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
76 1 0.01
77 197 0.99
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (77 bp):
GGTAAGAGATTGGATTGTCTTCAATCTGCCTTCTAATTCAGGTAAGAGATTAGATGCTTCAACTG
CCCCATGATCGG
Found at i:15019221 original size:80 final size:80
Alignment explanation
Indices: 15018714--15019301 Score: 336
Period size: 77 Copynumber: 7.5 Consensus size: 80
15018704 TTCTGTAGGA
* * *
15018714 TGATAGCTTCAATTTGCCCCATTATCGGGGTAAGAGAATGGTGTGTCTTCAATCTGCCCTC-TGA
1 TGATA-CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCC-CATGA
***
15018778 TTAAGGTAAGAGATTGG
64 TCGGGGTAAGAGATTGG
* * * * * * * *
15018795 ATTG-T-CTTCAATCTGCCTTC-TAATTC-AGGTGAGAGATTAG-ATG-CTTTAA-CTGCCTCAT
1 --TGATACTTCAATCTGCC-CCATGA-TCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCAT
15018853 GATCGGGGTAAGAGATTGG
62 GATCGGGGTAAGAGATTGG
* * * * *
15018872 ATTG-T-CTTCAATCTGCCTTC-TAATTC-AGGTAAGAGATTGG-ATG-ATTCAA-CTGCCCCAT
1 --TGATACTTCAATCTGCC-CCATGA-TCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCAT
*
15018930 GATCGGGGTAAGAGATCGG
62 GATCGGGGTAAGAGATTGG
* * * * *
15018949 TTTG-T-CTTCAATTTGCCTTC-TAATTC-AGGTAAGAGATTGG-ATG-CTTCAA-CTGCCCCAT
1 --TGATACTTCAATCTGCC-CCATGA-TCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCAT
*
15019007 GATCGGGGTAAGATATTGG
62 GATCGGGGTAAGAGATTGG
* * *** * * * * * *
15019026 TG-TGTCTTCAATCTGCCTTC-TGATTAAGGTAAAAGATTAG-AT-TCTTCAATTTACCTTC-TG
1 TGAT-ACTTCAATCTGCC-CCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCC-CCATG
** *
15019086 ATCAAGGTAAAAGATT--
63 ATCGGGGTAAGAGATTGG
* * ** * *
15019102 AGATGCTTCAATCTGCCCCATGATCAAGGTATGAGATTGGTGTGTCTTCAATGTGCCCCATGATC
1 TGATACTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCATGATC
15019167 GGGGTAAGAGATTGG
66 GGGGTAAGAGATTGG
* * * *
15019182 TG-TATTTTTAATCTGTCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCTATGAT
1 TGATA-CTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCATGAT
15019246 CGGGGTAAGAGATTGG
65 CGGGGTAAGAGATTGG
*
15019262 TGATGACTTCAATCTGCCCCATGATCGGAGTAAGAGATTG
1 TGAT-ACTTCAATCTGCCCCATGATCGGGGTAAGAGATTG
15019302 ATTTTACTGC
Statistics
Matches: 422, Mismatches: 64, Indels: 40
0.80 0.12 0.08
Matches are distributed among these distances:
75 4 0.01
76 31 0.07
77 204 0.48
78 48 0.11
79 4 0.01
80 93 0.22
81 34 0.08
82 2 0.00
83 2 0.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (80 bp):
TGATACTTCAATCTGCCCCATGATCGGGGTAAGAGATTGGTGTGTCTTCAATCTGCCCCATGATC
GGGGTAAGAGATTGG
Found at i:15042623 original size:19 final size:20
Alignment explanation
Indices: 15042601--15042639 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
15042591 AGGTTAATAG
*
15042601 CAAA-GAATCAATTTAAACA
1 CAAATGAATCAATTCAAACA
*
15042620 CAAATGAATCGATTCAAACA
1 CAAATGAATCAATTCAAACA
15042640 GAAAAACAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.54, C:0.18, G:0.08, T:0.21
Consensus pattern (20 bp):
CAAATGAATCAATTCAAACA
Found at i:15042794 original size:20 final size:21
Alignment explanation
Indices: 15042746--15042800 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
15042736 AACAATAATG
*
15042746 AATCGATTCAAATAGAAAAAC
1 AATCGATTCAAACAGAAAAAC
*
15042767 AATCGATTCAAACAG-AAGAC
1 AATCGATTCAAACAGAAAAAC
* *
15042787 AATTGATTTAAACA
1 AATCGATTCAAACA
15042801 TTTGCTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.53, C:0.15, G:0.11, T:0.22
Consensus pattern (21 bp):
AATCGATTCAAACAGAAAAAC
Found at i:15044632 original size:21 final size:21
Alignment explanation
Indices: 15044604--15044661 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
15044594 GATACCTATG
*
15044604 GAAG-TTCTACCGATACAAGT
1 GAAGCTTCTACCGATACAAAT
*
15044624 GAAGCTTCTACCGAAACAAAT
1 GAAGCTTCTACCGATACAAAT
* *
15044645 CATGCTTCTACCGATAC
1 GAAGCTTCTACCGATAC
15044662 TAAAAACTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 4 0.12
21 28 0.88
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (21 bp):
GAAGCTTCTACCGATACAAAT
Found at i:15045759 original size:194 final size:194
Alignment explanation
Indices: 15045414--15045855 Score: 545
Period size: 194 Copynumber: 2.3 Consensus size: 194
15045404 CCAGTACCCA
* * * ** * * * *
15045414 ATGCTGCTCACACGAGCTGTTGAGGACTCACAACGTATGTAGTACCCCATCCATCGATACGGTGT
1 ATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACAGTAT
*
15045479 CTGTCTATAAACTGTCCCCTAACGATGCTGCTCATACGAGCTATCGAGAATATGCATTCAAGCAT
66 CTGTCTATAAACTGTCCCCTAACGATGCTGCTCACACGAGCTATCGAGAATATGCATTCAAGCAT
*
15045544 AAATCCCAACCATCATAGGGCCTATAATCCA-TTTAGGATT-TTATATCTC-TTT-TTCGACTCA
131 AAATCCCAACCATCATAGGGCCTATAATCCATTTTAGGATTCTT-GA-CTCATTTCTT-GACTCA
15045605 CG
193 CG
* * *
15045607 ATGTTGCTTACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAGCCATCGATACAGTAT
1 ATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACAGTAT
* * * * *
15045672 CTGTGC-ATATAACTGTTCCTTAACGATGCTGCTCACACGAGCTGTCGAGAATATGTACTT-ATG
66 CTGT-CTATA-AACTGTCCCCTAACGATGCTGCTCACACGAGCTATCGAGAATATGCA-TTCAAG
* * * *
15045735 CATAAATCTCAGCCATCGTAGGGCCTATAATCCATTTTTGGATTCTTGACTCATTTCTTGACTCA
128 CATAAATCCCAACCATCATAGGGCCTATAATCCATTTTAGGATTCTTGACTCATTTCTTGACTCA
15045800 CG
193 CG
* * * *
15045802 ATGCTGCTCACACAAGCTGTCGAGGACTTGCAACACATGCGATACCTCAACCAT
1 ATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCAT
15045856 TGTGTCAATT
Statistics
Matches: 213, Mismatches: 29, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
193 61 0.29
194 79 0.37
195 69 0.32
196 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (194 bp):
ATGCTGCTCACACGAGCTGTCGAGGACTCGCAACATATGCGGTACCTCAACCATCGATACAGTAT
CTGTCTATAAACTGTCCCCTAACGATGCTGCTCACACGAGCTATCGAGAATATGCATTCAAGCAT
AAATCCCAACCATCATAGGGCCTATAATCCATTTTAGGATTCTTGACTCATTTCTTGACTCACG
Found at i:15051611 original size:21 final size:21
Alignment explanation
Indices: 15051587--15051657 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 21
15051577 GATTCAAACA
15051587 TAAACACTAATCATTCATTAC
1 TAAACACTAATCATTCATTAC
*
15051608 TAAA-AC-AATTTCAATTCA-AAC
1 TAAACACTAA--TC-ATTCATTAC
*
15051629 ATAAACACTAATCACTCATTAC
1 -TAAACACTAATCATTCATTAC
15051651 TGAAACA
1 T-AAACA
15051658 ATTTCAATCA
Statistics
Matches: 39, Mismatches: 3, Indels: 15
0.68 0.05 0.26
Matches are distributed among these distances:
19 2 0.05
20 2 0.05
21 13 0.33
22 18 0.46
23 2 0.05
24 2 0.05
ACGTcount: A:0.48, C:0.23, G:0.01, T:0.28
Consensus pattern (21 bp):
TAAACACTAATCATTCATTAC
Found at i:15051626 original size:43 final size:43
Alignment explanation
Indices: 15051578--15051665 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
15051568 TTACCTCAAG
*
15051578 ATTCAAACATAAACACTAATCATTCATTACTAAAACAATTTCA
1 ATTCAAACATAAACACTAATCACTCATTACTAAAACAATTTCA
*
15051621 ATTCAAACATAAACACTAATCACTCATTACTGAAACAATTTCA
1 ATTCAAACATAAACACTAATCACTCATTACTAAAACAATTTCA
15051664 AT
1 AT
15051666 CATTCATTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.48, C:0.22, G:0.01, T:0.30
Consensus pattern (43 bp):
ATTCAAACATAAACACTAATCACTCATTACTAAAACAATTTCA
Found at i:15051669 original size:21 final size:20
Alignment explanation
Indices: 15051601--15051669 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
15051591 CACTAATCAT
15051601 TCATTACTAAAACAATTTCAA
1 TCATTACT-AAACAATTTCAA
* * * *
15051622 TTCA-AACATAAACACTAATCAC
1 -TCATTAC-TAAACAAT-TTCAA
15051644 TCATTACTGAAACAATTTCAA
1 TCATTACT-AAACAATTTCAA
15051665 TCATT
1 TCATT
15051670 CATTCAAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 9
0.67 0.15 0.17
Matches are distributed among these distances:
21 20 0.57
22 15 0.43
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (20 bp):
TCATTACTAAACAATTTCAA
Found at i:15053244 original size:331 final size:331
Alignment explanation
Indices: 15052642--15053310 Score: 1275
Period size: 331 Copynumber: 2.0 Consensus size: 331
15052632 GGATGGATTA
*
15052642 TGGAAGAGAAGGATTATTTTGCATGTTTAAAGGTGTAGGGACTAAATAGAATAAAAGTGAAATAA
1 TGGAAGAGAAGGATTATTTTGCATGTTTAAAGGTCTAGGGACTAAATAGAATAAAAGTGAAATAA
*
15052707 TAGGGGTAATTTTGTAAATTTCCCATGAAGGATTTAATTGTACAAAATGAATTAATTGTGTGATT
66 TAGGGGTAATTTTGTAAATTTCCCAAGAAGGATTTAATTGTACAAAATGAATTAATTGTGTGATT
15052772 TAATGTGAGAAACGAAATGATTTGTGGATGTAGACTACGACCGTGCCATCGATCGAGGAAAAGGA
131 TAATGTGAGAAACGAAATGATTTGTGGATGTAGACTACGACCGTGCCATCGATCGAGGAAAAGGA
*
15052837 AAATTAGTGGAGTAGTCCTTAGAATCCATTCACAACTGCAATCCAGTCCGGTAAGTCCGTATGGT
196 AAATTAGTGGAGTAGTCCTTAGAATCCATTCACAACTACAATCCAGTCCGGTAAGTCCGTATGGT
15052902 TAAATTCTAATTTAAATTGTTTATTGTTGTAATGTGACTATTGTAATGAGATGAAATGATAATCG
261 TAAATTCTAATTTAAATTGTTTATTGTTGTAATGTGACTATTGTAATGAGATGAAATGATAATCG
15052967 AAATTG
326 AAATTG
*
15052973 TGGAAGAGAAGGATTATTTTGCATGTTTAAAGGTCTAGGGACTAAATTGAATAAAAGTGAAATAA
1 TGGAAGAGAAGGATTATTTTGCATGTTTAAAGGTCTAGGGACTAAATAGAATAAAAGTGAAATAA
*
15053038 TAGGGGTAATTTTGTAAATTTCCCAAGAAGGATTTAATTGTACAAAATGAATTGATTGTGTGATT
66 TAGGGGTAATTTTGTAAATTTCCCAAGAAGGATTTAATTGTACAAAATGAATTAATTGTGTGATT
*
15053103 TAATGTGAGAAACGGAATGATTTGTGGATGTAGACTACGACCGTGCCATCGATCGAGGAAAAGGA
131 TAATGTGAGAAACGAAATGATTTGTGGATGTAGACTACGACCGTGCCATCGATCGAGGAAAAGGA
15053168 AAATTAGTGGAGTAGTCCTTAGAATCCATTCACAACTACAATCCAGTCCGGTAAGTCCGTATGGT
196 AAATTAGTGGAGTAGTCCTTAGAATCCATTCACAACTACAATCCAGTCCGGTAAGTCCGTATGGT
15053233 TAAATTCTAATTTAAATTGTTTATTGTTGTAATGTGACTATTGTAATGAGATGAAATGATAATCG
261 TAAATTCTAATTTAAATTGTTTATTGTTGTAATGTGACTATTGTAATGAGATGAAATGATAATCG
15053298 AAATTG
326 AAATTG
*
15053304 TTGAAGA
1 TGGAAGA
15053311 CGAGTATGAA
Statistics
Matches: 331, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
331 331 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.32
Consensus pattern (331 bp):
TGGAAGAGAAGGATTATTTTGCATGTTTAAAGGTCTAGGGACTAAATAGAATAAAAGTGAAATAA
TAGGGGTAATTTTGTAAATTTCCCAAGAAGGATTTAATTGTACAAAATGAATTAATTGTGTGATT
TAATGTGAGAAACGAAATGATTTGTGGATGTAGACTACGACCGTGCCATCGATCGAGGAAAAGGA
AAATTAGTGGAGTAGTCCTTAGAATCCATTCACAACTACAATCCAGTCCGGTAAGTCCGTATGGT
TAAATTCTAATTTAAATTGTTTATTGTTGTAATGTGACTATTGTAATGAGATGAAATGATAATCG
AAATTG
Found at i:15053435 original size:51 final size:51
Alignment explanation
Indices: 15053359--15053545 Score: 250
Period size: 51 Copynumber: 3.6 Consensus size: 51
15053349 CTATAAACGA
*
15053359 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACAGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * *
15053410 AAAGGTCTGATGACTAAGTGTCATCGTGAGTAAATGAATCCATGATGGATT
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
* * * **
15053461 AAAGGTCCGATGACTCAGTGTCATCGTGAGTATATGAATTCCTATACGGAAC
1 AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAA-TCCTTTACGGATT
15053513 AAGAGGTCCGATGACTATA-TGTCATCGTGAGTA
1 AA-AGGTCCGATGACTA-AGTGTCATCGTGAGTA
15053546 TTGAATGAAA
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
51 81 0.69
52 9 0.08
53 27 0.23
54 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGTGTCATCGTGAGTAAATGAATCCTTTACGGATT
Found at i:15059758 original size:2 final size:2
Alignment explanation
Indices: 15059751--15059786 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
15059741 GTTTGCCATA
15059751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15059787 GAAATTAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15060724 original size:53 final size:50
Alignment explanation
Indices: 15060606--15060742 Score: 123
Period size: 51 Copynumber: 2.6 Consensus size: 50
15060596 CTATAAACGA
* * * * * **
15060606 AAAGGTCCGATAACTAAGTGACATCGTAAGTAAATGAATCCATGATGGATT
1 AAAGGTCCGATGACT-AGTGTCATCGTGAGTATATGAATCCATGACGGAAC
*
15060657 AAAGGTCTGATGACTCAGTGTCATCGTGAGTATATGAATTCCTAT-ACGGAAC
1 AAAGGTCCGATGACT-AGTGTCATCGTGAGTATATGAA-TCC-ATGACGGAAC
* *
15060709 AAGAGGTCCGATGACTATATCTCATCGTGAGTAT
1 AA-AGGTCCGATGACTA-GTGTCATCGTGAGTAT
15060743 GAAATGAAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
51 32 0.46
52 10 0.14
53 28 0.40
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.28
Consensus pattern (50 bp):
AAAGGTCCGATGACTAGTGTCATCGTGAGTATATGAATCCATGACGGAAC
Found at i:15060808 original size:60 final size:61
Alignment explanation
Indices: 15060690--15060808 Score: 150
Period size: 60 Copynumber: 2.0 Consensus size: 61
15060680 TCGTGAGTAT
* * * **
15060690 ATGAATTCCTATACGGAACAAGAGGTCCGATGACTATATCTCATCGTGAGTATGAAATGAA
1 ATGAATTCCAATACGAAACAAGAGCTCCGATGACTATATCTCATCGTGAGTAACAAATGAA
* * * *
15060751 ATGAGTTCCAATACGAAACAAGA-CTCCGATGACTTTGTGTCATCGTGAGTAACAAATG
1 ATGAATTCCAATACGAAACAAGAGCTCCGATGACTATATCTCATCGTGAGTAACAAATG
15060809 CGAATGAAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
60 29 0.59
61 20 0.41
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (61 bp):
ATGAATTCCAATACGAAACAAGAGCTCCGATGACTATATCTCATCGTGAGTAACAAATGAA
Found at i:15077527 original size:144 final size:143
Alignment explanation
Indices: 15077249--15077534 Score: 423
Period size: 144 Copynumber: 2.0 Consensus size: 143
15077239 CATATACCAT
* * * *
15077249 AGCTTAAGTGCTTCTGACTCTCGATTTTTAGTTGATGTCGTAGCAACTATCTAATTAACTATACT
1 AGCTTAAGTGCTTCTAAATCTCGATTTTTAGTTGATGTCATAGCAACTATCCAATTAACTATACT
** * * *
15077314 ACCAAGATAGTGGTACAAGTTATTATTTCTACAGACCTTTTTTATTACCACGTGTGCACTAGAAA
66 ACCAAGATAGTGGTACAAGTTATTATTTCTACAGACCCCTTTCATTACCACGTGTGCACCAAAAA
15077379 TAATCTTCATCAC
131 TAATCTTCATCAC
* *
15077392 AGCTTAAGTGCTTTTTAAATCTCGATTTTTAGTTGATGTCATAGCAACTGTCCAATTAACTATAC
1 AGCTTAAGTGC-TTCTAAATCTCGATTTTTAGTTGATGTCATAGCAACTATCCAATTAACTATAC
*
15077457 TACCCAA-ATAGTGGTACAAGTTATT-TTTCCTGCAGACCCCTTTCATTACCACGTGTGCACCAA
65 TA-CCAAGATAGTGGTACAAGTTATTATTT-CTACAGACCCCTTTCATTACCACGTGTGCACCAA
15077520 AAATAATCTTCATCA
128 AAATAATCTTCATCA
15077535 TGGCCAATTA
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
143 14 0.11
144 110 0.86
145 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (143 bp):
AGCTTAAGTGCTTCTAAATCTCGATTTTTAGTTGATGTCATAGCAACTATCCAATTAACTATACT
ACCAAGATAGTGGTACAAGTTATTATTTCTACAGACCCCTTTCATTACCACGTGTGCACCAAAAA
TAATCTTCATCAC
Found at i:15078596 original size:21 final size:21
Alignment explanation
Indices: 15078554--15078596 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
15078544 AAATAATTTC
* *
15078554 ATTACAAAAGGTACAAGTGAA
1 ATTACAAAAGGTAAAAGGGAA
15078575 ATTACAAATAGG-AAAAGGGAA
1 ATTACAAA-AGGTAAAAGGGAA
15078596 A
1 A
15078597 ATTTTCCTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.56, C:0.07, G:0.21, T:0.16
Consensus pattern (21 bp):
ATTACAAAAGGTAAAAGGGAA
Found at i:15079111 original size:21 final size:23
Alignment explanation
Indices: 15079068--15079114 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
15079058 TTTCACTCAT
**
15079068 TTTCTCTCTAAATTTCACACAAA
1 TTTCTCTCTAAAGCTCACACAAA
*
15079091 TTTCTCTCTAAAGCTCCCA-AAA
1 TTTCTCTCTAAAGCTCACACAAA
15079113 TT
1 TT
15079115 CTCAAAATTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.32, C:0.28, G:0.02, T:0.38
Consensus pattern (23 bp):
TTTCTCTCTAAAGCTCACACAAA
Found at i:15079268 original size:26 final size:24
Alignment explanation
Indices: 15079239--15079326 Score: 69
Period size: 26 Copynumber: 3.7 Consensus size: 24
15079229 AAGAGTTAAT
15079239 TTTAATTTTTTATTTAACTTTTATAA
1 TTTAATTTTTT-TTTAA-TTTTATAA
* *
15079265 TTTAA-TTATTTTTAA--TAAT-A
1 TTTAATTTTTTTTTAATTTTATAA
15079285 TTTAATTATTTTATATT-ATTTTATAA
1 TTTAATT-TTTT-T-TTAATTTTATAA
*
15079311 TTTAATTATTTTTTAA
1 TTTAATTTTTTTTTAA
15079327 AAATATTTTT
Statistics
Matches: 49, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
20 6 0.12
21 4 0.08
22 3 0.06
23 4 0.08
24 9 0.18
25 10 0.20
26 13 0.27
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (24 bp):
TTTAATTTTTTTTTAATTTTATAA
Found at i:15079280 original size:10 final size:10
Alignment explanation
Indices: 15079265--15079312 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
15079255 ACTTTTATAA
15079265 TTTAATTATT
1 TTTAATTATT
* *
15079275 TTTAATAATA
1 TTTAATTATT
15079285 TTTAATTA-T
1 TTTAATTATT
15079294 TTTATATTATT
1 TTTA-ATTATT
15079305 TTATAATT
1 TT-TAATT
15079313 TAATTATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 4 0.13
10 19 0.61
11 6 0.19
12 2 0.06
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTAATTATT
Found at i:15079307 original size:46 final size:47
Alignment explanation
Indices: 15079235--15079334 Score: 145
Period size: 46 Copynumber: 2.2 Consensus size: 47
15079225 TGGTAAGAGT
15079235 TAAT-TTTAATTTTTTATTTAACTTTTATAATTTAATTA-TTTTTAA
1 TAATATTTAATTTTTTATTTAACTTTTATAATTTAATTATTTTTTAA
15079280 TAATATTTAATTATTTTATATT-A-TTTTATAATTTAATTATTTTTTAA
1 TAATATTTAATT-TTTTAT-TTAACTTTTATAATTTAATTATTTTTTAA
*
15079327 AAATATTT
1 TAATATTT
15079335 TTTATGTGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
45 4 0.08
46 23 0.46
47 21 0.42
48 2 0.04
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (47 bp):
TAATATTTAATTTTTTATTTAACTTTTATAATTTAATTATTTTTTAA
Found at i:15080279 original size:7 final size:7
Alignment explanation
Indices: 15080264--15080294 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
15080254 AACATAGTAG
*
15080264 ATTTCGT
1 ATTTAGT
15080271 ATTTAGT
1 ATTTAGT
15080278 ATTTAGT
1 ATTTAGT
15080285 ATTTAGT
1 ATTTAGT
15080292 ATT
1 ATT
15080295 ATACCACTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (7 bp):
ATTTAGT
Found at i:15080903 original size:18 final size:18
Alignment explanation
Indices: 15080880--15080918 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
15080870 CGGATGCATA
*
15080880 TCCTAACCTTTATATGCT
1 TCCTAACCCTTATATGCT
*
15080898 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGCT
15080916 TCC
1 TCC
15080919 ATTTTCTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.44
Consensus pattern (18 bp):
TCCTAACCCTTATATGCT
Found at i:15081390 original size:142 final size:142
Alignment explanation
Indices: 15081134--15081408 Score: 433
Period size: 142 Copynumber: 1.9 Consensus size: 142
15081124 CATGGGTGAT
* *
15081134 GCAAACACCTCCAGGATCTTTATTATATCAAGGTGGGTCATCTTCCCAATACCCAAAACCAGTAG
1 GCAAACACCTCCAAGATCTTTATTATATCAAGGTGGGTCATCTTCCCAACACCCAAAACCAGTAG
*** * *
15081199 CACAAGTTCACCCGAAAGATGATCCAGAACCAGAGGAACCAGAGGAACCAAAAGCACAACCTCGC
66 CACAACCCCACCCGAAAGATGAACCAGAACCAAAGGAACCAGAGGAACCAAAAGCACAACCTCGC
15081264 TCGAAACCAGAA
131 TCGAAACCAGAA
* * *
15081276 GCAAACACCTCCAAGATCTTTATTCTATCAAGGTGGGTCATCTTCCCAACACTCACAACCAGTAG
1 GCAAACACCTCCAAGATCTTTATTATATCAAGGTGGGTCATCTTCCCAACACCCAAAACCAGTAG
* * *
15081341 CACAACCCCGCCCGAAAGATGAACCAGAACCAAAGGAACTAGAGGAACCAGAAGCACAACCTCGC
66 CACAACCCCACCCGAAAGATGAACCAGAACCAAAGGAACCAGAGGAACCAAAAGCACAACCTCGC
15081406 TCG
131 TCG
15081409 GAAGCTGAAC
Statistics
Matches: 120, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
142 120 1.00
ACGTcount: A:0.37, C:0.31, G:0.17, T:0.15
Consensus pattern (142 bp):
GCAAACACCTCCAAGATCTTTATTATATCAAGGTGGGTCATCTTCCCAACACCCAAAACCAGTAG
CACAACCCCACCCGAAAGATGAACCAGAACCAAAGGAACCAGAGGAACCAAAAGCACAACCTCGC
TCGAAACCAGAA
Found at i:15082041 original size:21 final size:21
Alignment explanation
Indices: 15082032--15082077 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
15082022 ACTAAAATCC
15082032 TAATTTTAAAAACCTAAACCT
1 TAATTTTAAAAACCTAAACCT
15082053 TAATTTT-AAAACCTTAAACC-
1 TAATTTTAAAAACC-TAAACCT
15082073 TAATT
1 TAATT
15082078 AAAATAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATTTTAAAAACCTAAACCT
Found at i:15082065 original size:20 final size:21
Alignment explanation
Indices: 15082030--15082077 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 21
15082020 ATACTAAAAT
15082030 CCTAATTTTAAAAACC-TAAA
1 CCTAATTTTAAAAACCTTAAA
15082050 CCTTAATTTT-AAAACCTTAAA
1 CC-TAATTTTAAAAACCTTAAA
15082071 CCTAATT
1 CCTAATT
15082078 AAAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (21 bp):
CCTAATTTTAAAAACCTTAAA
Found at i:15091471 original size:52 final size:53
Alignment explanation
Indices: 15091388--15091630 Score: 320
Period size: 52 Copynumber: 4.7 Consensus size: 53
15091378 ATTTCACTTC
* * * * *
15091388 ATTCATATACTCACGGTGAC-CCATAGCCATCGGACC-TTATAATTCGTAAGGG
1 ATTCATATACTCACGATGACACTATAGTCATCGGACCGTT-TAATCCGTAAAGG
* *
15091440 ATTCGTATACTCACGATGACA-TAGAGTCATCGGACC-TCTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACTATAGTCATCGGACCGT-TTAATCCGTAAAGG
*
15091492 ATCCATATACTCACGATGACACT-TAGTCATCGGACCGTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACTATAGTCATCGGACCGTTTAATCCGTAAAGG
* *
15091544 ATTCATATACTCACGATGACACT-TAATCATCGGACCGTTTAATCCGTAAAAG
1 ATTCATATACTCACGATGACACTATAGTCATCGGACCGTTTAATCCGTAAAGG
*
15091596 ATTCATATGCTCACGATGACACT-TAGTCATCGGAC
1 ATTCATATACTCACGATGACACTATAGTCATCGGAC
15091631 TACTTCGTTT
Statistics
Matches: 172, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
52 169 0.98
53 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (53 bp):
ATTCATATACTCACGATGACACTATAGTCATCGGACCGTTTAATCCGTAAAGG
Found at i:15093600 original size:36 final size:36
Alignment explanation
Indices: 15093553--15093624 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
15093543 ATTTAGGTAT
* *
15093553 ACAGCACCGTAGCATTTCTACAAGAATCTGTATCAC
1 ACAGCACCGTAGCATTTCTACAAGAATATATATCAC
*
15093589 ACAGCACCGTAGCATTTCTTCAAGAATATATATCAC
1 ACAGCACCGTAGCATTTCTACAAGAATATATATCAC
15093625 CCGTTTTGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.26
Consensus pattern (36 bp):
ACAGCACCGTAGCATTTCTACAAGAATATATATCAC
Found at i:15097989 original size:21 final size:21
Alignment explanation
Indices: 15097959--15098013 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
15097949 CCTGTACTAG
*
15097959 TTCTACCGATACAAGTATAAT
1 TTCTATCGATACAAGTATAAT
15097980 TTCTATCGATACAAGTATAAT
1 TTCTATCGATACAAGTATAAT
15098001 TTCTATCGATACA
1 TTCTATCGATACA
15098014 TGTCATGCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (21 bp):
TTCTATCGATACAAGTATAAT
Found at i:15098809 original size:52 final size:51
Alignment explanation
Indices: 15098723--15098966 Score: 278
Period size: 52 Copynumber: 4.7 Consensus size: 51
15098713 ATTTCACTTC
* * * * *
15098723 ATTCATATACTCACGGTGAC-CCATAGCCACCGGACCTTATAATCCGTAAGGG
1 ATTCATATACTCACGATGACACTA-AGTCATCGGACCTT-TAATCCGTAAAGG
*
15098775 ATTCGTATACTCACGATGACA-TAGAGTCATCGGACCTCTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACTA-AGTCATCGGACCT-TTAATCCGTAAAGG
* * * *
15098827 ATTCATATACTCAGGATGACACTTAGTCATCGTATCGTTTAATCCGTAAAGG
1 ATTCATATACTCACGATGACACTAAGTCATCGGA-CCTTTAATCCGTAAAGG
* *
15098879 ATTCATATACTCACGATGACACTTAA-TCATTGGACCGTTTAATCTGTAAAGG
1 ATTCATATACTCACGATGACAC-TAAGTCATCGGACC-TTTAATCCGTAAAGG
* *
15098931 ATTCATATACTCACGATGACACTTAGTCATCAGACC
1 ATTCATATACTCACGATGACACTAAGTCATCGGACC
15098967 ACTTTGTTTA
Statistics
Matches: 164, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
51 3 0.02
52 155 0.95
53 6 0.04
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (51 bp):
ATTCATATACTCACGATGACACTAAGTCATCGGACCTTTAATCCGTAAAGG
Found at i:15098914 original size:104 final size:104
Alignment explanation
Indices: 15098762--15098961 Score: 307
Period size: 104 Copynumber: 1.9 Consensus size: 104
15098752 CCGGACCTTA
* *
15098762 TAATCCGTAAGGGATTCGTATACTCACGATGACATAGAGTCATCGGACC-TCTTAATCCGTAAAG
1 TAATCCGTAAAGGATTCATATACTCACGATGACATAGAGTCATCGGACCGT-TTAATCCGTAAAG
*
15098826 GATTCATATACTCAGGATGACACTTAGTCATCGTATCGTT
65 GATTCATATACTCACGATGACACTTAGTCATCGTATCGTT
* *
15098866 TAATCCGTAAAGGATTCATATACTCACGATGACACTTA-A-TCATTGGACCGTTTAATCTGTAAA
1 TAATCCGTAAAGGATTCATATACTCACGATGACA--TAGAGTCATCGGACCGTTTAATCCGTAAA
15098929 GGATTCATATACTCACGATGACACTTAGTCATC
64 GGATTCATATACTCACGATGACACTTAGTCATC
15098962 AGACCACTTT
Statistics
Matches: 88, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
104 84 0.95
105 2 0.02
106 2 0.02
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (104 bp):
TAATCCGTAAAGGATTCATATACTCACGATGACATAGAGTCATCGGACCGTTTAATCCGTAAAGG
ATTCATATACTCACGATGACACTTAGTCATCGTATCGTT
Found at i:15102103 original size:30 final size:29
Alignment explanation
Indices: 15102050--15102117 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 29
15102040 TCGGAGTTTT
*
15102050 TTTTATTTATATTTACTTGTTTATTTTGGCA
1 TTTTATTT-TATTTACTTATTTA-TTTGGCA
* *
15102081 TTTTATTTTATTTATTTATTTATTTGTCA
1 TTTTATTTTATTTACTTATTTATTTGGCA
15102110 -TTTATTTT
1 TTTTATTTT
15102118 CATGTCTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 8 0.24
29 6 0.18
30 12 0.35
31 8 0.24
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (29 bp):
TTTTATTTTATTTACTTATTTATTTGGCA
Found at i:15103728 original size:24 final size:24
Alignment explanation
Indices: 15103692--15104034 Score: 254
Period size: 24 Copynumber: 14.3 Consensus size: 24
15103682 ACATCTCAAG
15103692 TACGTTTACGCTCGTCAGCTTATA
1 TACGTTTACGCTCGTCAGCTTATA
* *
15103716 TACATTTACGCTCGTCAGCTTACA
1 TACGTTTACGCTCGTCAGCTTATA
* *
15103740 CACGTTTACGCTTGTCAGCTTATA
1 TACGTTTACGCTCGTCAGCTTATA
* **
15103764 TACGTTTACGTTCGTCAGCTTCCA
1 TACGTTTACGCTCGTCAGCTTATA
* * *
15103788 TACGTTTATGCTCGCCATCTTATA
1 TACGTTTACGCTCGTCAGCTTATA
* **
15103812 TACGTTTATGCTCGTCAGCTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* * * *
15103836 CACGTTTATGCTCTTCAACTTATA
1 TACGTTTACGCTCGTCAGCTTATA
* * * * **
15103860 TATGTTTATGCTCGTTAGTTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* * * *
15103884 CACGTTTACGCTCATCGGCTTAAA
1 TACGTTTACGCTCGTCAGCTTATA
* * **
15103908 TATGTTTACGCTCGTCAACTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* * * * **
15103932 CACGTTTACACTCGTTAACTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* * **
15103956 CACGTTTACACTCGTCAGCTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* * * **
15103980 CACGTTTACGCTTGTTAGCTTGCA
1 TACGTTTACGCTCGTCAGCTTATA
* *
15104004 CACGTTTACGCTCGTCAACTTATA
1 TACGTTTACGCTCGTCAGCTTATA
15104028 TACGTTT
1 TACGTTT
15104035 GCGTAGTTTA
Statistics
Matches: 254, Mismatches: 65, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 254 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.37
Consensus pattern (24 bp):
TACGTTTACGCTCGTCAGCTTATA
Found at i:15103764 original size:48 final size:48
Alignment explanation
Indices: 15103693--15104020 Score: 350
Period size: 48 Copynumber: 6.8 Consensus size: 48
15103683 CATCTCAAGT
* *
15103693 ACGTTTACGCTCGTCAGCTTATATACATTTACGCTCGTCAGCTTACAC
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * * *
15103741 ACGTTTACGCTTGTCAGCTTATATACGTTTACGTTCGTCAGCTTCCAT
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * * *
15103789 ACGTTTATGCTCGCCATCTTATATACGTTTATGCTCGTCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * * * * * *
15103837 ACGTTTATGCTCTTCAACTTATATATGTTTATGCTCGTTAGTTTGCAC
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * * * *
15103885 ACGTTTACGCTCATCGGCTTAAATATGTTTACGCTCGTCAACTTGCAC
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * * ** * *
15103933 ACGTTTACACTCGTTAACTTGCACACGTTTACACTCGTCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
* * ** *
15103981 ACGTTTACGCTTGTTAGCTTGCACACGTTTACGCTCGTCA
1 ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCA
15104021 ACTTATATAC
Statistics
Matches: 237, Mismatches: 43, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 237 1.00
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.37
Consensus pattern (48 bp):
ACGTTTACGCTCGTCAGCTTATATACGTTTACGCTCGTCAGCTTGCAC
Found at i:15107746 original size:36 final size:36
Alignment explanation
Indices: 15107706--15107792 Score: 111
Period size: 36 Copynumber: 2.4 Consensus size: 36
15107696 TGACCTTTGG
*
15107706 GTCAATAGGGAGTAAAATGAATATCATGACCCTTAA
1 GTCAATAGGGAGTAAAATGAACATCATGACCCTTAA
** * * *
15107742 GTCAATAAAGAGTAAAATGAGCATCATGACCTTTAG
1 GTCAATAGGGAGTAAAATGAACATCATGACCCTTAA
*
15107778 GTCAACAGGGAGTAA
1 GTCAATAGGGAGTAA
15107793 GAATAACCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.23
Consensus pattern (36 bp):
GTCAATAGGGAGTAAAATGAACATCATGACCCTTAA
Found at i:15110232 original size:240 final size:240
Alignment explanation
Indices: 15109928--15110408 Score: 944
Period size: 240 Copynumber: 2.0 Consensus size: 240
15109918 AGGAAAATCA
15109928 GATAGCATAATCAGAGTTGTTTCAGATATTATGTATTATTTGTTAATAGGTCTGTTGATCTGTCT
1 GATAGCATAATCAGAGTTGTTTCAGATATTATGTATTATTTGTTAATAGGTCTGTTGATCTGTCT
15109993 TTTGAAAGATTTTTGAGATTTCTGTCTAAATTTGATAATGAAATAAACTCAAGATAAATGATAAA
66 TTTGAAAGATTTTTGAGATTTCTGTCTAAATTTGATAATGAAATAAACTCAAGATAAATGATAAA
15110058 TATATTATATTCCATATAGAAAACTTAGTCAACAAGTTAAAAGAGACATAACACTGTATCTGAAA
131 TATATTATATTCCATATAGAAAACTTAGTCAACAAGTTAAAAGAGACATAACACTGTATCTGAAA
15110123 GTTAATAAAGATTCAGTTATTTAGTTCTAGTTAAAGATATGAGAT
196 GTTAATAAAGATTCAGTTATTTAGTTCTAGTTAAAGATATGAGAT
15110168 GATAGCATAATCAGAGTTGTTTCAGATATTATGTATTATTTGTTAATAGGTCTGTTGATCTGTCT
1 GATAGCATAATCAGAGTTGTTTCAGATATTATGTATTATTTGTTAATAGGTCTGTTGATCTGTCT
*
15110233 TTTGAAAGATTTTTGAGATTTCTGTCTAAATTTGATAATGAAATAAAGTCAAGATAAATGATAAA
66 TTTGAAAGATTTTTGAGATTTCTGTCTAAATTTGATAATGAAATAAACTCAAGATAAATGATAAA
*
15110298 TATATTATATTCCATATAGAAAACTTAGTCAACAAGTTAAAAGAGACGTAACACTGTATCTGAAA
131 TATATTATATTCCATATAGAAAACTTAGTCAACAAGTTAAAAGAGACATAACACTGTATCTGAAA
15110363 GTTAATAAAGATTCAGTTATTTAGTTCTAGTTAAAGATATGAGAT
196 GTTAATAAAGATTCAGTTATTTAGTTCTAGTTAAAGATATGAGAT
15110408 G
1 G
15110409 CTGAAAATTA
Statistics
Matches: 239, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
240 239 1.00
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (240 bp):
GATAGCATAATCAGAGTTGTTTCAGATATTATGTATTATTTGTTAATAGGTCTGTTGATCTGTCT
TTTGAAAGATTTTTGAGATTTCTGTCTAAATTTGATAATGAAATAAACTCAAGATAAATGATAAA
TATATTATATTCCATATAGAAAACTTAGTCAACAAGTTAAAAGAGACATAACACTGTATCTGAAA
GTTAATAAAGATTCAGTTATTTAGTTCTAGTTAAAGATATGAGAT
Found at i:15112690 original size:12 final size:12
Alignment explanation
Indices: 15112673--15112702 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15112663 CCACACAAAA
15112673 TCTTCTTCATTT
1 TCTTCTTCATTT
*
15112685 TCTTCTTCCTTT
1 TCTTCTTCATTT
15112697 TCTTCT
1 TCTTCT
15112703 ATTCCTTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.30, G:0.00, T:0.67
Consensus pattern (12 bp):
TCTTCTTCATTT
Found at i:15112700 original size:24 final size:26
Alignment explanation
Indices: 15112673--15112737 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 26
15112663 CCACACAAAA
15112673 TCTTCTTCATT-TTCTTCTTC-CTTT
1 TCTTCTTCATTCTTCTTCTTCTCTTT
15112697 TCTTC-T-ATTCCTTCTTCTTCTCTTT
1 TCTTCTTCATT-CTTCTTCTTCTCTTT
*
15112722 TC-TCTTC-TTCCTCTTC
1 TCTTCTTCATTCTTCTTC
15112738 AACACCTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
22 3 0.09
23 1 0.03
24 22 0.63
25 9 0.26
ACGTcount: A:0.03, C:0.34, G:0.00, T:0.63
Consensus pattern (26 bp):
TCTTCTTCATTCTTCTTCTTCTCTTT
Found at i:15114752 original size:15 final size:16
Alignment explanation
Indices: 15114728--15114757 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
15114718 GTCTAACCAT
15114728 CTGGAGTGCAATTTTC
1 CTGGAGTGCAATTTTC
15114744 CTGGA-TGCAATTTT
1 CTGGAGTGCAATTTT
15114758 AAACGTGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (16 bp):
CTGGAGTGCAATTTTC
Found at i:15125410 original size:22 final size:22
Alignment explanation
Indices: 15125385--15125432 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
15125375 GACTTCCATG
15125385 CACCATTCATCCCAGAGAAGCC
1 CACCATTCATCCCAGAGAAGCC
15125407 CACCATTCATCCCAGAGAAGCC
1 CACCATTCATCCCAGAGAAGCC
15125429 CACC
1 CACC
15125433 TTCCTTCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.31, C:0.44, G:0.12, T:0.12
Consensus pattern (22 bp):
CACCATTCATCCCAGAGAAGCC
Found at i:15136779 original size:103 final size:103
Alignment explanation
Indices: 15136600--15136802 Score: 406
Period size: 103 Copynumber: 2.0 Consensus size: 103
15136590 GACATCACAA
15136600 CAATTCTTCACATAATGTCCCAACTTCCCGCAACTAAAGTAGTACCCCAATAAATTCTCATATTT
1 CAATTCTTCACATAATGTCCCAACTTCCCGCAACTAAAGTAGTACCCCAATAAATTCTCATATTT
15136665 GAAAGGGACCCAACACTTCTAATTTGACTCTATTACCC
66 GAAAGGGACCCAACACTTCTAATTTGACTCTATTACCC
15136703 CAATTCTTCACATAATGTCCCAACTTCCCGCAACTAAAGTAGTACCCCAATAAATTCTCATATTT
1 CAATTCTTCACATAATGTCCCAACTTCCCGCAACTAAAGTAGTACCCCAATAAATTCTCATATTT
15136768 GAAAGGGACCCAACACTTCTAATTTGACTCTATTA
66 GAAAGGGACCCAACACTTCTAATTTGACTCTATTA
15136803 ACACAAAAAT
Statistics
Matches: 100, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (103 bp):
CAATTCTTCACATAATGTCCCAACTTCCCGCAACTAAAGTAGTACCCCAATAAATTCTCATATTT
GAAAGGGACCCAACACTTCTAATTTGACTCTATTACCC
Found at i:15137436 original size:20 final size:18
Alignment explanation
Indices: 15137407--15137460 Score: 74
Period size: 17 Copynumber: 2.9 Consensus size: 18
15137397 GACCTAATTG
15137407 TTTTTATTTATTTGTTTA
1 TTTTTATTTATTTGTTTA
*
15137425 TTTTAGTATTTAATT-TTTA
1 TTTT--TATTTATTTGTTTA
15137444 TTTTTATTTATTTGTTT
1 TTTTTATTTATTTGTTT
15137461 GTTTATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
17 8 0.26
18 7 0.23
19 8 0.26
20 8 0.26
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.76
Consensus pattern (18 bp):
TTTTTATTTATTTGTTTA
Found at i:15137465 original size:16 final size:15
Alignment explanation
Indices: 15137446--15137487 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 15
15137436 AATTTTTATT
15137446 TTTATTTATTTGTTTG
1 TTTATTTATTTG-TTG
15137462 TTTATTTATCTTGTTG
1 TTTATTTAT-TTGTTG
15137478 -TTATTTATTT
1 TTTATTTATTT
15137488 TTATGTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 2 0.08
15 8 0.32
16 12 0.48
17 3 0.12
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTGTTG
Found at i:15137567 original size:41 final size:43
Alignment explanation
Indices: 15137467--15137572 Score: 111
Period size: 41 Copynumber: 2.6 Consensus size: 43
15137457 GTTTGTTTAT
15137467 TTATCTTG-TTG-TTATTTATTT-TTATGTCATTTTATTGTTA
1 TTATCTTGTTTGTTTATTTATTTATTATGTCATTTTATTGTTA
* * *
15137507 -TCTCTTTTATTATTT-TTTATTTAATT-TG-CA-TTTATTGTTA
1 TTATCTTGT-TTGTTTATTTATTT-ATTATGTCATTTTATTGTTA
15137547 TTATCTTGTTTGTTTATTTATTTATT
1 TTATCTTGTTTGTTTATTTATTTATT
15137573 TATCATTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
39 5 0.09
40 18 0.34
41 24 0.45
42 4 0.08
43 2 0.04
ACGTcount: A:0.18, C:0.06, G:0.08, T:0.69
Consensus pattern (43 bp):
TTATCTTGTTTGTTTATTTATTTATTATGTCATTTTATTGTTA
Found at i:15138941 original size:95 final size:89
Alignment explanation
Indices: 15138785--15139052 Score: 292
Period size: 95 Copynumber: 3.0 Consensus size: 89
15138775 GTAAAAAATC
** * ** * *
15138785 CTCAAACTTTTCCAAGAAAAGCAATTAAATCCCTAC-TTTTTTTGCACTCACTT-AAGTACTTGA
1 CTCAAACTTTTTAAAAAAAAGCAATTAAGCCCCTACTTTTTTTTGCACTCAATTGGA-TACTTGA
15138848 ACTTTCAAAATGCATCAAAAATG-CA
65 ACTTTCAAAATGCATCAAAAA-GACA
* *
15138873 CTCAAACTTTTTTTTTTAAAAAAAAGCAATTAAGCCCCTGCTTTTATTTTGCACTCAGTTGGATA
1 CTCAAAC-----TTTTTAAAAAAAAGCAATTAAGCCCCTACTTTT-TTTTGCACTCAATTGGATA
*
15138938 CTTGAACTTTCAAAATGCATCAAAAAGACC
60 CTTGAACTTTCAAAATGCATCAAAAAGACA
* * * *
15138968 CTCAAACTTTTTCAAAAAGAGCAATTAAGCCCCCAATTTTTTTTGCACTCAATTGGATACTTGAA
1 CTCAAACTTTTTAAAAAAAAGCAATTAAGCCCCTACTTTTTTTTGCACTCAATTGGATACTTGAA
* *
15139033 CTGTC-AAATACATCAAAAAG
66 CTTTCAAAATGCATCAAAAAG
15139053 GTCATTTGAC
Statistics
Matches: 154, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
88 21 0.14
89 28 0.18
90 28 0.18
93 23 0.15
94 4 0.03
95 49 0.32
96 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (89 bp):
CTCAAACTTTTTAAAAAAAAGCAATTAAGCCCCTACTTTTTTTTGCACTCAATTGGATACTTGAA
CTTTCAAAATGCATCAAAAAGACA
Found at i:15139207 original size:27 final size:28
Alignment explanation
Indices: 15139168--15139249 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 28
15139158 TTATAAAAAA
*
15139168 TAAAAATCAAT-AAAAATATTAAATTTTAG
1 TAAAAAT-AATAAAAAAT-TTAAAATTTAG
*
15139197 TAAAAAT-ATAAAAAATTTAAAATTTAT
1 TAAAAATAATAAAAAATTTAAAATTTAG
15139224 TAAAAATTAGA-AAAAAATTATAAAAT
1 TAAAAA-TA-ATAAAAAATT-TAAAAT
15139250 GCATATCCCT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
27 17 0.37
28 7 0.15
29 15 0.33
30 7 0.15
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.33
Consensus pattern (28 bp):
TAAAAATAATAAAAAATTTAAAATTTAG
Found at i:15139501 original size:86 final size:88
Alignment explanation
Indices: 15139401--15139563 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 88
15139391 TTTGAGGGCC
* * * * * * *
15139401 TTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGCAAAATAAAAGCAGGGGCTTAATT-T
1 TTTTGATGCATTTTGAAAATTCAAGTACCCAAGTGAATGCAAAATAAAAACAAGAGCTTAATTAT
15139465 T-TTTTTTAAAATTTGAAGACTT
66 TATTTTTTAAAATTTGAAGACTT
* ** *
15139487 TTTTTATGCATTTTGAAAATTCAAGTATTCAAGTGAATGCAAAATAAAAACAAGAGTTTAATTAT
1 TTTTGATGCATTTTGAAAATTCAAGTACCCAAGTGAATGCAAAATAAAAACAAGAGCTTAATTAT
15139552 TATTTTTTAAAA
66 TATTTTTTAAAA
15139564 ACAACTTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
86 52 0.81
87 2 0.03
88 10 0.16
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (88 bp):
TTTTGATGCATTTTGAAAATTCAAGTACCCAAGTGAATGCAAAATAAAAACAAGAGCTTAATTAT
TATTTTTTAAAATTTGAAGACTT
Found at i:15141154 original size:116 final size:116
Alignment explanation
Indices: 15140941--15141174 Score: 335
Period size: 116 Copynumber: 2.0 Consensus size: 116
15140931 TGAAGGTGTT
* * * *
15140941 TGTATTAAGAGTTGGATTGCATTTTGTCCATTCTACTCAAAAAATAAGTATATTAATTATTATAC
1 TGTACTAAGAGTTGGATTGCAATTTGTCCATTCTACTCAAAAAATAAGTAAATTAATCATTATAC
* * *
15141006 ATTAGATTAAAGAGAAAATTGTTCATTTTGTTAAAATTTTGTGTCACAGTC
66 ATTAGATTAAAGAGAAAATTGTTCATTCTGTTAAAATCTTATGTCACAGTC
* * * *
15141057 TGTACTAAGAGTTGGATTGTAATTTGTTCATTCTACTCAAAAAATGAGTAAATTAGTCATTATAC
1 TGTACTAAGAGTTGGATTGCAATTTGTCCATTCTACTCAAAAAATAAGTAAATTAATCATTATAC
* *
15141122 ATTAGATTAAAGAGTAAATTGATT-ATTCTGTTAAAATCTTATGTCACTGTC
66 ATTAGATTAAAGAGAAAATTG-TTCATTCTGTTAAAATCTTATGTCACAGTC
15141173 TG
1 TG
15141175 ATCAATTTGC
Statistics
Matches: 104, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
116 102 0.98
117 2 0.02
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.41
Consensus pattern (116 bp):
TGTACTAAGAGTTGGATTGCAATTTGTCCATTCTACTCAAAAAATAAGTAAATTAATCATTATAC
ATTAGATTAAAGAGAAAATTGTTCATTCTGTTAAAATCTTATGTCACAGTC
Found at i:15147165 original size:15 final size:16
Alignment explanation
Indices: 15147135--15147173 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
15147125 TAATAAAAAT
15147135 ATAAGTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
15147152 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
15147167 ATAATTT
1 ATAATTT
15147174 TTAAAGGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:15148085 original size:13 final size:13
Alignment explanation
Indices: 15148067--15148091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15148057 TTAAATTAAA
15148067 TTTTAAAAATTAT
1 TTTTAAAAATTAT
15148080 TTTTAAAAATTA
1 TTTTAAAAATTA
15148092 AAATGCTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTAAAAATTAT
Found at i:15153313 original size:33 final size:32
Alignment explanation
Indices: 15153251--15153326 Score: 77
Period size: 33 Copynumber: 2.4 Consensus size: 32
15153241 TAAGTAATTA
* **
15153251 ATATTAATTATTTATAAAATTTAGTTATAAT-
1 ATATAAATTATTTATAAAATTTAAATATAATC
*
15153282 ATATAAATTATATTTTAAATATTTAAATATAATC
1 ATATAAATTAT-TTATAAA-ATTTAAATATAATC
15153316 AT-TAAA-TATTT
1 ATATAAATTATTT
15153327 GTAATTAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
31 12 0.32
32 9 0.24
33 15 0.39
34 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (32 bp):
ATATAAATTATTTATAAAATTTAAATATAATC
Found at i:15160077 original size:26 final size:26
Alignment explanation
Indices: 15159976--15160080 Score: 72
Period size: 24 Copynumber: 4.0 Consensus size: 26
15159966 CTATAAATTT
* * *
15159976 TAAATTCTTTATAATTAAT-TAAT-A
1 TAAATTATTTTTAAATAATATAATAA
* * *
15160000 TAAATTATTTGTAAA-ATTAATGATACA
1 TAAATTATTTTTAAATAAT-ATAATA-A
*
15160027 TAAATTATTTTAAAAACTTAATATAATAA
1 TAAATTATTTT-TAAA--TAATATAATAA
*
15160056 TAAATTATTTTTAAATAGTATAATA
1 TAAATTATTTTTAAATAATATAATA
15160081 TAACGATAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
23 2 0.03
24 12 0.19
25 3 0.05
26 9 0.15
27 11 0.18
28 6 0.10
29 12 0.19
30 5 0.08
31 2 0.03
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (26 bp):
TAAATTATTTTTAAATAATATAATAA
Found at i:15160083 original size:31 final size:30
Alignment explanation
Indices: 15159990--15160116 Score: 97
Period size: 31 Copynumber: 4.4 Consensus size: 30
15159980 TTCTTTATAA
*
15159990 TTAAT-TAAT-ATAAATTATTTGTAAA-A-
1 TTAATATAATAATAAATTATTTTTAAATAG
* * *
15160016 TTAATGAT-A-CATAAATTA-TTTTAAAAAC
1 TTAAT-ATAATAATAAATTATTTTTAAATAG
15160044 TTAATATAATAATAAATTATTTTTAAATAG
1 TTAATATAATAATAAATTATTTTTAAATAG
** * * *
15160074 TATAATATAACGATAAATGATATTTAAATGAT
1 T-TAATATAATAATAAATTATTTTTAAAT-AG
15160106 TTAATATAATA
1 TTAATATAATA
15160117 TTACATGAAA
Statistics
Matches: 80, Mismatches: 11, Indels: 15
0.75 0.10 0.14
Matches are distributed among these distances:
26 11 0.14
27 12 0.15
28 7 0.09
29 8 0.10
30 9 0.11
31 31 0.39
32 2 0.03
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (30 bp):
TTAATATAATAATAAATTATTTTTAAATAG
Found at i:15160110 original size:62 final size:56
Alignment explanation
Indices: 15159990--15160116 Score: 134
Period size: 56 Copynumber: 2.2 Consensus size: 56
15159980 TTCTTTATAA
*
15159990 TTAAT-TAAT-ATAAATTATTTGTAAAATTAATGATACATAAATTATTTTAAAAAC
1 TTAATATAATAATAAATTATTTGTAAAATTAATGATACATAAATGATTTTAAAAAC
* * *
15160044 TTAATATAATAATAAATTATTTTTAAATAGTATAAT-ATAACGATAAATGATATTTAAATGAT
1 TTAATATAATAATAAATTATTTGTAAA-A-T-TAATGAT-AC-ATAAATGAT-TTTAAA-AAC
15160106 TTAATATAATA
1 TTAATATAATA
15160117 TTACATGAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
54 5 0.08
55 4 0.07
56 15 0.25
57 1 0.02
58 3 0.05
59 6 0.10
60 8 0.13
61 6 0.10
62 12 0.20
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (56 bp):
TTAATATAATAATAAATTATTTGTAAAATTAATGATACATAAATGATTTTAAAAAC
Found at i:15160114 original size:36 final size:33
Alignment explanation
Indices: 15160074--15160147 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
15160064 TTTTAAATAG
**
15160074 TATAATATAACGATAAATGATATTTAAATGATTTAA
1 TATAATATAAC-ATAAA--ATATTTAAAAAATTTAA
* *
15160110 TATAATATTACATGAAATATTTAAAAAATTTAA
1 TATAATATAACATAAAATATTTAAAAAATTTAA
15160143 TATAA
1 TATAA
15160148 CAATACATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 20 0.59
35 4 0.12
36 10 0.29
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (33 bp):
TATAATATAACATAAAATATTTAAAAAATTTAA
Found at i:15160155 original size:33 final size:31
Alignment explanation
Indices: 15160032--15160160 Score: 96
Period size: 31 Copynumber: 4.1 Consensus size: 31
15160022 ATACATAAAT
* * * * *
15160032 TATTTTAAAAACTTAATATAATAATAAATTA
1 TATTTAAAAAATTTAATATAACAATACATGA
* * * * * *
15160063 TTTTTAAATAGTATAATATAACGATAAATGA
1 TATTTAAAAAATTTAATATAACAATACATGA
** * *
15160094 TATTTAAATGATTTAATATAATATTACATGAAA
1 TATTTAAAAAATTTAATATAACAATACATG--A
*
15160127 TATTTAAAAAATTTAATATAACAATACATAA
1 TATTTAAAAAATTTAATATAACAATACATGA
15160158 TAT
1 TAT
15160161 ATATATATAT
Statistics
Matches: 74, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
31 48 0.65
33 26 0.35
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (31 bp):
TATTTAAAAAATTTAATATAACAATACATGA
Found at i:15166079 original size:49 final size:49
Alignment explanation
Indices: 15166016--15166275 Score: 308
Period size: 49 Copynumber: 5.3 Consensus size: 49
15166006 TGTTGAAACC
* * *
15166016 TATACCCTAAAGATGTGAAAGGAAAGATTGAAGCCGCAATGGCGAATCT
1 TATACCTTAAAGATGTGAAGGGAAAGATTGAAGCCGCAATGACGAATCT
* *
15166065 TATACCTTAGAGATGAGAAGGGAAAGATT-ATAGCCGCAATGACGAATCT
1 TATACCTTAAAGATGTGAAGGGAAAGATTGA-AGCCGCAATGACGAATCT
* * *
15166114 TGTACCTTAAAGATATGAAGGGAAAGATTGAAGCCGCAACGACGAATCT
1 TATACCTTAAAGATGTGAAGGGAAAGATTGAAGCCGCAATGACGAATCT
* * *
15166163 TATACCTTAGAGATGAGAAGGGAAAGATTGAAGCCACAATGACGAATCT
1 TATACCTTAAAGATGTGAAGGGAAAGATTGAAGCCGCAATGACGAATCT
* * * * * * *
15166212 TGTACCCTATAGATATGAAAGGAAAGATTGAAGCCGTAGTGGA-GAATCT
1 TATACCTTAAAGATGTGAAGGGAAAGATTGAAGCCGCAAT-GACGAATCT
* *
15166261 TATACCCTGAAGATG
1 TATACCTTAAAGATG
15166276 AGGAAAAGTA
Statistics
Matches: 179, Mismatches: 29, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
48 1 0.01
49 175 0.98
50 3 0.02
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (49 bp):
TATACCTTAAAGATGTGAAGGGAAAGATTGAAGCCGCAATGACGAATCT
Found at i:15166203 original size:98 final size:98
Alignment explanation
Indices: 15166018--15166247 Score: 381
Period size: 98 Copynumber: 2.3 Consensus size: 98
15166008 TTGAAACCTA
* * *
15166018 TACCCTAAAGATGTGAAAGGAAAGATTGAAGCCGCAATGGCGAATCTTATACCTTAGAGATGAGA
1 TACCCTAAAGATATGAAAGGAAAGATTGAAGCCGCAACGACGAATCTTATACCTTAGAGATGAGA
*
15166083 AGGGAAAGATTATAGCCGCAATGACGAATCTTG
66 AGGGAAAGATTATAGCCACAATGACGAATCTTG
* *
15166116 TACCTTAAAGATATGAAGGGAAAGATTGAAGCCGCAACGACGAATCTTATACCTTAGAGATGAGA
1 TACCCTAAAGATATGAAAGGAAAGATTGAAGCCGCAACGACGAATCTTATACCTTAGAGATGAGA
15166181 AGGGAAAGATTGA-AGCCACAATGACGAATCTTG
66 AGGGAAAGATT-ATAGCCACAATGACGAATCTTG
*
15166214 TACCCTATAGATATGAAAGGAAAGATTGAAGCCG
1 TACCCTAAAGATATGAAAGGAAAGATTGAAGCCG
15166248 TAGTGGAGAA
Statistics
Matches: 122, Mismatches: 9, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
98 121 0.99
99 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (98 bp):
TACCCTAAAGATATGAAAGGAAAGATTGAAGCCGCAACGACGAATCTTATACCTTAGAGATGAGA
AGGGAAAGATTATAGCCACAATGACGAATCTTG
Found at i:15166289 original size:147 final size:147
Alignment explanation
Indices: 15166016--15166311 Score: 323
Period size: 147 Copynumber: 2.0 Consensus size: 147
15166006 TGTTGAAACC
* * *
15166016 TATACCCTAAAGATGTGAAAGGAAAGATTGAAGCCGCAATGGCGAATCTTATACCTTAGAGATGA
1 TATACCCTAAAGATGAGAAAGGAAAGATTGAAGCCACAATGACGAATCTTATACCTTAGAGATGA
* * * ** *
15166081 GAAGGGAAAGATTATAGCCGCAATGACGAATCTTGTACCTTAAAGATATGAAGGGAAAGATTGAA
66 GAAGGGAAAGATTATAGCCGCAATGACGAATCTTATACCCTAAAGATAGGAAAAGAAAGATTAAA
*
15166146 GCCGCAACGACGAATCT
131 GCCGCAAAGACGAATCT
* * * * *
15166163 TATACCTTAGAGATGAGAAGGGAAAGATTGAAGCCACAATGACGAATCTTGTACCCTATAGATAT
1 TATACCCTAAAGATGAGAAAGGAAAGATTGAAGCCACAATGACGAATCTTATA-CCT-TAGAGAT
* * * *
15166228 GA-AA-GGAAAGATTGA-AGCCGTAGTGGA-GAATCTTATACCCTGAAGATGAGGAAAAG-TAGA
64 GAGAAGGGAAAGATT-ATAGCCGCAAT-GACGAATCTTATACCCTAAAGAT-AGGAAAAGAAAGA
* *
15166288 TTAAAGTCGCAAAGGCGAATCT
126 TTAAAGCCGCAAAGACGAATCT
15166310 TA
1 TA
15166312 AGACTATAAA
Statistics
Matches: 123, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
147 102 0.83
148 13 0.11
149 8 0.07
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (147 bp):
TATACCCTAAAGATGAGAAAGGAAAGATTGAAGCCACAATGACGAATCTTATACCTTAGAGATGA
GAAGGGAAAGATTATAGCCGCAATGACGAATCTTATACCCTAAAGATAGGAAAAGAAAGATTAAA
GCCGCAAAGACGAATCT
Found at i:15166751 original size:192 final size:192
Alignment explanation
Indices: 15166467--15167003 Score: 653
Period size: 192 Copynumber: 2.8 Consensus size: 192
15166457 TACAGTGAAG
* * *
15166467 CAGATTAAAACAACGAAGCAAATCTTAATGTCCTTGAGATTACAATGGAATGGAGTGAAGCACCA
1 CAGATTAAAACAACGAAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGTGAAGCACCA
* * * * * * * *
15166532 TATTCTACAGCCCTAAAGTTACAGTGGATCGAAGCAAAATGAGTAACGGATCTTAATGTCCCTAA
66 AATCCTATATCCTTGAAGTTACAGTGGATCGAAGCAAAATGAGTAACGAATCTCAATGTCCCTAA
* * *
15166597 GGTTACAGTGGAATAGAGAGAAGTTACAATATCAAATCCTATACCTCA-GAGTTGTAGTGGGT
131 GGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACC-CATAAGTTATAGTGGGT
* * * * *
15166659 CGGATTAAAACAACGAAGCAAATCTCAATGTCCTTGAGGCTACAGTGGAATAGATTGAAGCACTA
1 CAGATTAAAACAACGAAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGTGAAGCACCA
* * * * **
15166724 AATCCTATATCATTGAAGTTGCAGTGGATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTAA
66 AATCCTATATCCTTGAAGTTACAGTGGATCGAAGCAAAATGAGTAACGAATCTCAATGTCCCTAA
*
15166789 GGTTACAGTGGAATGGAGAGAAGTTACAATACCAAATCCTATACCCATAAGTTATAGTGGGT
131 GGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACCCATAAGTTATAGTGGGT
* * * *
15166851 CAGATTAAAGCAACGAAGTAGATCTCAATGTCATTGAGGTTACAGTGGAATGGAGTGAAGCACCA
1 CAGATTAAAACAACGAAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGTGAAGCACCA
* * * ** * * ** * *
15166916 GATCTTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAATGAATCTCAATGTCCCTGA
66 AATCCTATATCCTTGAAGTTACAGTGGATCGAAGCAAAATGAGTAACGAATCTCAATGTCCCTAA
* * * *
15166981 GGTTATAGTAGAATGGAGTGAAG
131 GGTTACAGTGGAATAGAGAGAAG
15167004 CACTAGATCT
Statistics
Matches: 297, Mismatches: 47, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
191 2 0.01
192 295 0.99
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (192 bp):
CAGATTAAAACAACGAAGCAAATCTCAATGTCCTTGAGGTTACAGTGGAATGGAGTGAAGCACCA
AATCCTATATCCTTGAAGTTACAGTGGATCGAAGCAAAATGAGTAACGAATCTCAATGTCCCTAA
GGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACCCATAAGTTATAGTGGGT
Found at i:15166782 original size:93 final size:92
Alignment explanation
Indices: 15166487--15167096 Score: 311
Period size: 93 Copynumber: 6.4 Consensus size: 92
15166477 CAACGAAGCA
* * * * * * * * ** *
15166487 AATCTTAATGTCCTTGAGATTACAATGGAATGGAGTGAAGCACCATATTCTACAGCCCTAAAGTT
1 AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGCACCAAATCCTATATCATTGAAGTT
* * **
15166552 ACAGTGGATCGAAGCAAAATGAGTAACG
66 ACAGTGGATTGGATTAAAATGAGTAA-G
* * * * * *
15166580 GATCTTAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATATCAAATCCTATACCTCA
1 AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAG---C---ACCAAATCCTATA--TCA
** * * **
15166645 --G-AGTTGTAGTGGGTCGGATTAAAACAACG-AAG
58 TTGAAGTTACAGTGGATTGGATTAAAATGA-GTAAG
* * * * *
15166677 CAAATCTCAATGTCCTTGAGGCTACAGTGGAATAGATTGAAGCACTAAATCCTATATCATTGAAG
1 --AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGCACCAAATCCTATATCATTGAAG
*
15166742 TTGCAGTGGATTGGATTAAAATGAGTAACG
64 TTACAGTGGATTGGATTAAAATGAGTAA-G
* * *
15166772 AATCTCAATGTCCCTAAGGTTACAGTGGAATGGAGAGAAGTTACAATACCAAATCCTATACCCA-
1 AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAG---C---ACCAAATCCTATA-TCAT
* * ** *
15166836 T-AAGTTATAGTGGGTCAGATTAAAGCAACGAAGT-AG
59 TGAAGTTACAGTGGATTGGATT-AA--AATG-AGTAAG
** * * *
15166872 -ATCTCAATGTCATTGAGGTTACAGTGGAATGGAGTGAAGCACCAGATCTTATATCCTTGAAGTT
1 AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGCACCAAATCCTATATCATTGAAGTT
* **
15166936 ACAATATATTGGATTAAAATGAGTAATG
66 ACAGTGGATTGGATTAAAATGAGTAA-G
* * * * * * * *
15166964 AATCTCAATGTCCCTGAGGTTATAGTAGAATGGAGTGAAGCACTAGATCTTATACCACTAAAGTT
1 AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGCACCAAATCCTATATCATTGAAGTT
*** * * *** *
15167029 GTTGTGGGTAGGATTAAAGCCA-AAAG
66 ACAGTGGATTGGATTAAAATGAGTAAG
*
15167055 CATATCTCAATGTCCCTGAGGTTACACTGGAATGGAGTGAAG
1 -A-ATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAG
15167097 TTTCAAAACC
Statistics
Matches: 393, Mismatches: 90, Indels: 68
0.71 0.16 0.12
Matches are distributed among these distances:
90 3 0.01
91 8 0.02
92 5 0.01
93 196 0.50
94 36 0.09
95 1 0.00
96 4 0.01
97 1 0.00
98 35 0.09
99 93 0.24
100 3 0.01
101 5 0.01
102 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (92 bp):
AATCTCAATGTCCCTGAGGTTACAGTGGAATGGAGTGAAGCACCAAATCCTATATCATTGAAGTT
ACAGTGGATTGGATTAAAATGAGTAAG
Found at i:15166878 original size:99 final size:98
Alignment explanation
Indices: 15166580--15166910 Score: 297
Period size: 99 Copynumber: 3.4 Consensus size: 98
15166570 ATGAGTAACG
* *
15166580 GATCTTAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATATCAAATCCTATACCTCA
1 GATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACC-CA
* *
15166645 -GAGTTGTAGTGGGTCGGATTAAAACAACGAAGCA
65 TAAGTTGTAGTGGGTCGGATT-AAACAACGAAGTA
* * * * ** * *
15166679 AATCTCAATGTCCTTGAGGCTACAGTGGAATAGATTGAAG---C---ACTAAATCCTATA-TCAT
1 GATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACCCA-
* * * *
15166737 TGAAGTTGCAGTGGATTGGATT-AA-AATG-AGTAA
65 T-AAGTTGTAGTGGGTCGGATTAAACAACGAAGT-A
*
15166770 CGAATCTCAATGTCCCTAAGGTTACAGTGGAATGGAGAGAAGTTACAATACCAAATCCTATACCC
1 -G-ATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACCC
* *
15166835 ATAAGTTATAGTGGGTCAGATTAAAGCAACGAAGTA
64 ATAAGTTGTAGTGGGTCGGATTAAA-CAACGAAGTA
** * * *
15166871 GATCTCAATGTCATTGAGGTTACAGTGGAATGGAGTGAAG
1 GATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAG
15166911 CACCAGATCT
Statistics
Matches: 180, Mismatches: 35, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
90 2 0.01
91 6 0.03
92 2 0.01
93 44 0.24
94 16 0.09
96 2 0.01
98 15 0.08
99 83 0.46
100 3 0.02
101 4 0.02
102 3 0.02
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (98 bp):
GATCTCAATGTCCCTAAGGTTACAGTGGAATAGAGAGAAGTTACAATACCAAATCCTATACCCAT
AAGTTGTAGTGGGTCGGATTAAACAACGAAGTA
Found at i:15167127 original size:192 final size:187
Alignment explanation
Indices: 15166467--15167096 Score: 547
Period size: 192 Copynumber: 3.3 Consensus size: 187
15166457 TACAGTGAAG
* * * * *
15166467 CAGATTAAAACAACGAAGCAAATCTTAATGTC-CTTGAGATTACAATGGAATGGAGTGAAGCACC
1 CAGATTAAAGCAAC-AAGCAGATCTCAATGTCAC-TGAGGTTACACTGGAATGGAGTGAAGCACC
* * * * * * * ** * * ** * *
15166531 ATATTCTACAGCCCTAAAGTTACAGTGGATCGAAGCAAAATGAGTAACGGATCTTAATGTCCCTA
64 AAATCCTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTA
* * * * *
15166596 AGGTTACAGTGGAATAGAGAGAAGTTACAATATCAAATCCTATACCTCA-GAGTTGTAGTGGGT
129 AGGTTACAGTAGAATGGAGAGAAG-T-C-A-ACCAAATCCTATACC-CATAAGTTATAGTGGGT
* * * * * * * *
15166659 CGGATTAAAACAACGAAGCAAATCTCAATGTC-CTTGAGGCTACAGTGGAATAGATTGAAGCACT
1 CAGATTAAAGCAAC-AAGCAGATCTCAATGTCAC-TGAGGTTACACTGGAATGGAGTGAAGCACC
* * * **
15166723 AAATCCTATATCATTGAAGTTGCAGTGGATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTA
64 AAATCCTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTA
*
15166788 AGGTTACAGTGGAATGGAGAGAAGTTACAATACCAAATCCTATACCCATAAGTTATAGTGGGT
129 AGGTTACAGTAGAATGGAGAGAAG-T-C-A-ACCAAATCCTATACCCATAAGTTATAGTGGGT
* * *
15166851 CAGATTAAAGCAACGAAGTAGATCTCAATGTCATTGAGGTTACAGTGGAATGGAGTGAAGCACCA
1 CAGATTAAAGCAAC-AAGCAGATCTCAATGTCACTGAGGTTACACTGGAATGGAGTGAAGCACCA
* * * *
15166916 GATCTTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAATGAATCTCAATGTCCCTGA
65 AATCCTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTAA
* * * * * * *
15166981 GGTTATAGTAGAATGGAGTGAAG-C-ACTAGATCTTATA-CCACTAAAGTTGTTGTGGGT
130 GGTTACAGTAGAATGGAGAGAAGTCAACCAAATCCTATACCCA-T-AAGTTATAGTGGGT
* *
15167038 -AGGATTAAAGCCAA-AAGCATATCTCAATGTCCCTGAGGTTACACTGGAATGGAGTGAAG
1 CA-GATTAAAG-CAACAAGCAGATCTCAATGTCACTGAGGTTACACTGGAATGGAGTGAAG
15167097 TTTCAAAACC
Statistics
Matches: 375, Mismatches: 57, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
185 3 0.01
186 52 0.14
187 20 0.05
188 3 0.01
189 1 0.00
191 2 0.01
192 294 0.78
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (187 bp):
CAGATTAAAGCAACAAGCAGATCTCAATGTCACTGAGGTTACACTGGAATGGAGTGAAGCACCAA
ATCCTATATCCTTGAAGTTACAATATATTGGATTAAAATGAGTAACGAATCTCAATGTCCCTAAG
GTTACAGTAGAATGGAGAGAAGTCAACCAAATCCTATACCCATAAGTTATAGTGGGT
Found at i:15167262 original size:39 final size:39
Alignment explanation
Indices: 15167207--15167910 Score: 236
Period size: 39 Copynumber: 17.5 Consensus size: 39
15167197 AATTACATTA
*
15167207 CCATCCAATCTCTTACCCCGATCGTGGGACAGATTGAAG
1 CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * * *
15167246 CCAT-CAGATCTTTTACCCTAATCAGAGGG-CAAATTGAAG
1 CCATCCA-ATCTCTTACCCTGATC-GTGGGACAGATTGAAG
* *
15167285 ACACCATCCAATCTCTTACCCTGACCATGGGACAGATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * **
15167327 CCATCCAATCTTTTACCCTAATCAGAAGG-C-GAATTGAAG
1 CCATCCAATCTCTTACCCTGATC-GTGGGACAG-ATTGAAG
* * ** *
15167366 ATACCATCCAATCTCTTACCCCGACCAAGGGGCAGATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * *
15167408 TCATCCAATCT-TTAACCCT-AACAAGAGGG-CAGATTGAAG
1 CCATCCAATCTCTT-ACCCTGATC--GTGGGACAGATTGAAG
* * * *
15167447 ACACATCCAAAT-TCTTACCCCGACCATGGGCCAGATTGAAG
1 -C-CATCC-AATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * * * * * * *
15167488 TCGTCCAATCTTTTACCCTAACTAGAGTG-TAGATTGAAG
1 CCATCCAATCTCTTACCCTGA-TCGTGGGACAGATTGAAG
* * * * *
15167527 ACACCATCTAATCTCTTACCCCGACCATGGGGCAGATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * *** *
15167569 CCATCCAATCTTTTACCCTAACTAAAGGG-CAGACTGAAG
1 CCATCCAATCTCTTACCCTGA-TCGTGGGACAGATTGAAG
** * * *
15167608 ACACCATCCAATCTCTTACCCCAACCATGGGGC-GATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * * * *
15167649 TCATCCAATCTTTTACCCTAAATAGAGGG-CAGATTGAAG
1 CCATCCAATCTCTTACCCT-GATCGTGGGACAGATTGAAG
* * * * *
15167688 ACACCATTCAATCTCTTA-ACTCGATCATAAGG-TAGATTGAAG
1 ---CCATCCAATCTCTTACCCT-GATCGT-GGGACAGATTGAAG
* * * *
15167730 CCATCCAATCTTTTACCCTAACCAGAGGG-CAGATTGAAG
1 CCATCCAATCTCTTACCCTGATC-GTGGGACAGATTGAAG
* * * *
15167769 ACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
* * * * * **
15167811 TCATTCAATCTTTTACCCTAACCAGAAGG-CAGATTGAAG
1 CCATCCAATCTCTTACCCTGATC-GTGGGACAGATTGAAG
* ** * *
15167850 ATACCATTCAATCTCTTACCCCAACCAT-GGAGCAGATTGAAG
1 ---CCATCCAATCTCTTACCCTGATCGTGGGA-CAGATTGAAG
*
15167892 CCATCCAATCTTTTACCCT
1 CCATCCAATCTCTTACCCT
15167911 AACTAGAGGG
Statistics
Matches: 496, Mismatches: 117, Indels: 104
0.69 0.16 0.15
Matches are distributed among these distances:
38 27 0.05
39 208 0.42
40 25 0.05
41 46 0.09
42 187 0.38
43 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (39 bp):
CCATCCAATCTCTTACCCTGATCGTGGGACAGATTGAAG
Found at i:15167341 original size:81 final size:80
Alignment explanation
Indices: 15167206--15167952 Score: 1002
Period size: 81 Copynumber: 9.2 Consensus size: 80
15167196 AAATTACATT
* * *
15167206 ACCATCCAATCTCTTACCCCGATCGTGGGACAGATTGAAGCCAT-CAGATCTTTTACCCTAATCA
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCA-ATCTTTTACCCTAA-CA
*
15167270 GAGGGCAAATTGAAGAC
64 GAGGGCAGATTGAAGAC
* *
15167287 ACCATCCAATCTCTTACCCTGACCATGGGACAGATTGAAGCCATCCAATCTTTTACCCTAATCAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAA-CAG
* *
15167352 AAGGC-GAATTGAAGAT
65 AGGGCAG-ATTGAAGAC
* * *
15167368 ACCATCCAATCTCTTACCCCGACCAAGGGGCAGATTGAAGTCATCCAATCTTTAACCCTAACAAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAAC-AG
15167433 AGGGCAGATTGAAGAC
65 AGGGCAGATTGAAGAC
* * *
15167449 A-CATCCAAAT-TCTTACCCCGACCATGGGCCAGATTGAAGTCGTCCAATCTTTTACCCTAACTA
1 ACCATCC-AATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAAC-A
* *
15167512 GAGTGTAGATTGAAGAC
64 GAGGGCAGATTGAAGAC
* *
15167529 ACCATCTAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACTAA
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAAC-AG
*
15167594 AGGGCAGACTGAAGAC
65 AGGGCAGATTGAAGAC
* * *
15167610 ACCATCCAATCTCTTACCCCAACCATGGGGC-GATTGAAGTCATCCAATCTTTTACCCTAAATAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCT-AACAG
15167674 AGGGCAGATTGAAGAC
65 AGGGCAGATTGAAGAC
* * * * ** *
15167690 ACCATTCAATCTCTTAACTCGATCATAAGGTAGATTGAAGCCATCCAATCTTTTACCCTAACCAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAA-CAG
15167755 AGGGCAGATTGAAGAC
65 AGGGCAGATTGAAGAC
* *
15167771 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATTCAATCTTTTACCCTAACCAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAA-CAG
* *
15167836 AAGGCAGATTGAAGAT
65 AGGGCAGATTGAAGAC
* * *
15167852 ACCATTCAATCTCTTACCCCAACCATGGAGCAGATTGAAGCCATCCAATCTTTTACCCTAACTAG
1 ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAAC-AG
15167917 AGGGCAGATTGAA-ATC
65 AGGGCAGATTGAAGA-C
*
15167933 ACCATCCAATCTTTTACCCC
1 ACCATCCAATCTCTTACCCC
15167953 TAATCAAGAG
Statistics
Matches: 590, Mismatches: 64, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
80 142 0.24
81 445 0.75
82 3 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (80 bp):
ACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACAGA
GGGCAGATTGAAGAC
Found at i:15167526 original size:161 final size:162
Alignment explanation
Indices: 15167205--15167952 Score: 1039
Period size: 161 Copynumber: 4.6 Consensus size: 162
15167195 GAAATTACAT
* * *
15167205 TACCATCCAATCTCTTACCCCGATCGTGGGACAGATTGAAGCCAT-CAGATCTTTTACCCTAATC
1 TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCA-ATCTTTTACCCTAA-C
* * * *
15167269 -AGAGGGCAAATTGAAGACACCATCCAATCTCTTACCCTGACCATGGGACAGATTGAAGCCATCC
64 AAGAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCC
15167333 AATCTTTTACCCTAA-TCAGAAGGC-GAATTGAAGA
129 AATCTTTTACCCTAACT-AGAAGGCAG-ATTGAAGA
* * *
15167367 TACCATCCAATCTCTTACCCCGACCAAGGGGCAGATTGAAGTCATCCAATCTTTAACCCTAACAA
1 TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACAA
* *
15167432 GAGGGCAGATTGAAGACA-CATCCAAAT-TCTTACCCCGACCATGGGCCAGATTGAAGTCGTCCA
66 GAGGGCAGATTGAAGACACCATCC-AATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCA
*
15167495 ATCTTTTACCCTAACTAG-AGTGTAGATTGAAGA
130 ATCTTTTACCCTAACTAGAAG-GCAGATTGAAGA
* *
15167528 CACCATCTAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACTA
1 TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAAC-A
* *
15167593 A-AGGGCAGACTGAAGACACCATCCAATCTCTTACCCCAACCATGGGGC-GATTGAAGTCATCCA
65 AGAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCA
* *
15167656 ATCTTTTACCCTAAATAGAGGGCAGATTGAAGA
130 ATCTTTTACCCTAACTAGAAGGCAGATTGAAGA
* * * * * ** * *
15167689 CACCATTCAATCTCTTAACTCGATCATAAGGTAGATTGAAGCCATCCAATCTTTTACCCTAACCA
1 TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACAA
*
15167754 GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATTCAA
66 GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCAA
*
15167819 TCTTTTACCCTAACCAGAAGGCAGATTGAAGA
131 TCTTTTACCCTAACTAGAAGGCAGATTGAAGA
* * * *
15167851 TACCATTCAATCTCTTACCCCAACCATGGAGCAGATTGAAGCCATCCAATCTTTTACCCTAACTA
1 TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACAA
*
15167916 GAGGGCAGATTGAA-ATCACCATCCAATCTTTTACCCC
66 GAGGGCAGATTGAAGA-CACCATCCAATCTCTTACCCC
15167953 TAATCAAGAG
Statistics
Matches: 523, Mismatches: 50, Indels: 26
0.87 0.08 0.04
Matches are distributed among these distances:
160 3 0.01
161 283 0.54
162 235 0.45
163 2 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (162 bp):
TACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAATCTTTTACCCTAACAA
GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATCCAA
TCTTTTACCCTAACTAGAAGGCAGATTGAAGA
Found at i:15167727 original size:242 final size:243
Alignment explanation
Indices: 15167206--15167944 Score: 1032
Period size: 242 Copynumber: 3.0 Consensus size: 243
15167196 AAATTACATT
* * * * *
15167206 ACCATCCAATCTCTTACCCCGATCGTGGGACAGATTGAAGCCAT-CAGATCTTTTACCCTAA-TC
1 ACCATCCAATCTCTTAACCCGACCATAGGCCAGATTGAAGCCATCCA-ATCTTTTACCCTAACT-
* * *
15167269 AGAGGGCAAATTGAAGACACCATCCAATCTCTTACCCTGACCATGGGACAGATTGAAGCCATCCA
64 AGAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCA
* *
15167334 ATCTTTTACCCTAA-TCAGAAGGC-GAATTGAAGATACCATCCAATCTCTTACCCCGACCAAGGG
129 ATCTTTTACCCTAACT-AGAAGGCAG-ATTGAAGATACCATCCAATCTCTTACCCCAACCATGGG
*
15167397 GCAGATTGAAGTCATCCAATCTTTAACCCTAACA-AGAGGGCAGATTGAAGAC
192 GCAGATTGAAGTCATCCAATCTTTTACCCTAA-ATAGAGGGCAGATTGAAGAC
* * * *
15167449 A-CATCCAAAT-TCTTACCCCGACCATGGGCCAGATTGAAGTCGTCCAATCTTTTACCCTAACTA
1 ACCATCC-AATCTCTTAACCCGACCATAGGCCAGATTGAAGCCATCCAATCTTTTACCCTAACTA
* * *
15167512 GAGTGTAGATTGAAGACACCATCTAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAA
65 GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAA
* *
15167577 TCTTTTACCCTAACTA-AAGGGCAGACTGAAGACACCATCCAATCTCTTACCCCAACCATGGGGC
130 TCTTTTACCCTAACTAGAA-GGCAGATTGAAGATACCATCCAATCTCTTACCCCAACCATGGGGC
15167641 -GATTGAAGTCATCCAATCTTTTACCCTAAATAGAGGGCAGATTGAAGAC
194 AGATTGAAGTCATCCAATCTTTTACCCTAAATAGAGGGCAGATTGAAGAC
* * * * *
15167690 ACCATTCAATCTCTTAACTCGATCATAAGG-TAGATTGAAGCCATCCAATCTTTTACCCTAACCA
1 ACCATCCAATCTCTTAACCCGACCAT-AGGCCAGATTGAAGCCATCCAATCTTTTACCCTAACTA
* *
15167754 GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGTCATTCAA
65 GAGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAA
* * *
15167819 TCTTTTACCCTAACCAGAAGGCAGATTGAAGATACCATTCAATCTCTTACCCCAACCATGGAGCA
130 TCTTTTACCCTAACTAGAAGGCAGATTGAAGATACCATCCAATCTCTTACCCCAACCATGGGGCA
* *
15167884 GATTGAAGCCATCCAATCTTTTACCCTAACTAGAGGGCAGATTGAA-ATC
195 GATTGAAGTCATCCAATCTTTTACCCTAAATAGAGGGCAGATTGAAGA-C
15167933 ACCATCCAATCT
1 ACCATCCAATCT
15167945 TTTACCCCTA
Statistics
Matches: 445, Mismatches: 38, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
240 1 0.00
241 52 0.12
242 323 0.73
243 69 0.16
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.24
Consensus pattern (243 bp):
ACCATCCAATCTCTTAACCCGACCATAGGCCAGATTGAAGCCATCCAATCTTTTACCCTAACTAG
AGGGCAGATTGAAGACACCATCCAATCTCTTACCCCGACCATGGGGCAGATTGAAGCCATCCAAT
CTTTTACCCTAACTAGAAGGCAGATTGAAGATACCATCCAATCTCTTACCCCAACCATGGGGCAG
ATTGAAGTCATCCAATCTTTTACCCTAAATAGAGGGCAGATTGAAGAC
Found at i:15168655 original size:23 final size:24
Alignment explanation
Indices: 15168611--15168655 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
15168601 CTACAAAAAG
*
15168611 AAGAAAAACAGAGACAACAATGAA
1 AAGAAAAACAGAAACAACAATGAA
15168635 AAGAAAAA-AGAAAACAA-AATG
1 AAGAAAAACAG-AAACAACAATG
15168656 TGTTTTCGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.71, C:0.09, G:0.16, T:0.04
Consensus pattern (24 bp):
AAGAAAAACAGAAACAACAATGAA
Found at i:15169932 original size:17 final size:19
Alignment explanation
Indices: 15169895--15169933 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
15169885 ATTAAATCCC
*
15169895 TTTTCATTTATTTTTACTA
1 TTTTCATTTATTTTGACTA
15169914 TTTT-ATTTATTTTGA-TA
1 TTTTCATTTATTTTGACTA
15169931 TTT
1 TTT
15169934 AATATGCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTCATTTATTTTGACTA
Found at i:15185118 original size:10 final size:9
Alignment explanation
Indices: 15185103--15185148 Score: 58
Period size: 10 Copynumber: 5.0 Consensus size: 9
15185093 TTTTAAAAAT
15185103 TAAAATTTAA
1 TAAAATTT-A
15185113 TAAAATTTA
1 TAAAATTTA
15185122 T-AAATTTA
1 TAAAATTTA
*
15185130 TAAATATTTT
1 TAAA-ATTTA
15185140 TAAAATTTA
1 TAAAATTTA
15185149 ATTAATTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TAAAATTTA
Found at i:15185557 original size:11 final size:11
Alignment explanation
Indices: 15185525--15185558 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
15185515 AACTCCATTC
15185525 TATATTATTTT
1 TATATTATTTT
*
15185536 TGTATTAATTTT
1 TATATT-ATTTT
15185548 TATATTATTTT
1 TATATTATTTT
15185559 AATAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
TATATTATTTT
Found at i:15185977 original size:31 final size:31
Alignment explanation
Indices: 15185884--15186000 Score: 102
Period size: 31 Copynumber: 3.9 Consensus size: 31
15185874 TTAATATAAT
**
15185884 ATTTGATACTTGAACTTGATATTTTTTCTTA
1 ATTTGATACTAAAACTTGATATTTTTTCTTA
* *
15185915 ATTT-AGTATTTAAAA-TT--T-TTTTTAT-TCA
1 ATTTGA-TA-CTAAAACTTGATATTTTT-TCTTA
*
15185943 ATTTGATACTAAAATTTGATATTTTTTCTTA
1 ATTTGATACTAAAACTTGATATTTTTTCTTA
* *
15185974 ATTTGATACTTAAACTTGACATTTTTT
1 ATTTGATACTAAAACTTGATATTTTTT
15186001 TAAGTTCGTA
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
27 5 0.07
28 15 0.22
29 3 0.04
30 3 0.04
31 39 0.57
32 3 0.04
ACGTcount: A:0.30, C:0.08, G:0.07, T:0.56
Consensus pattern (31 bp):
ATTTGATACTAAAACTTGATATTTTTTCTTA
Found at i:15186372 original size:59 final size:59
Alignment explanation
Indices: 15186223--15186411 Score: 245
Period size: 60 Copynumber: 3.2 Consensus size: 59
15186213 ATAAATTTAT
* * * *
15186223 GTACCAAATTGAATCTAAAAAAAAAGCTTAGGTGCCAAATTAAGAAAAAATGTCAAGTTCAG
1 GTACCAAATTGAGTC--CAAAAAAAGTTTAGGTACCAAATT-AGAAAAAATGTCAAGTTCAG
* *
15186285 GTACCAAATTGAGTCCAAAAAAAGTTTAGTTACCAAACTAGGAAAAAATGTCAAGTTCAG
1 GTACCAAATTGAGTCCAAAAAAAGTTTAGGTACCAAATTA-GAAAAAATGTCAAGTTCAG
* * *
15186345 GTACCAAATTGGGT-CAAAAAAAGTTTAGGTACCAAATTAAAAAAAATGTCAAGTTCAA
1 GTACCAAATTGAGTCCAAAAAAAGTTTAGGTACCAAATTAGAAAAAATGTCAAGTTCAG
*
15186403 GTATCAAAT
1 GTACCAAAT
15186412 GTTATATTAA
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
58 25 0.22
59 24 0.21
60 51 0.45
62 14 0.12
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (59 bp):
GTACCAAATTGAGTCCAAAAAAAGTTTAGGTACCAAATTAGAAAAAATGTCAAGTTCAG
Found at i:15186374 original size:28 final size:28
Alignment explanation
Indices: 15186277--15186382 Score: 97
Period size: 28 Copynumber: 3.6 Consensus size: 28
15186267 AAAAAATGTC
*
15186277 AAGTTCAGGTACCAAATTGAGTCCAAAAA
1 AAGTTCAGGTACCAAATTGGGT-CAAAAA
* * * * *
15186306 AAGTTTAGTTACCAAACTAGG-AAAAAA
1 AAGTTCAGGTACCAAATTGGGTCAAAAA
15186333 TGTCAAGTTCAGGTACCAAATTGGGTCAAAAA
1 ----AAGTTCAGGTACCAAATTGGGTCAAAAA
*
15186365 AAGTTTAGGTACCAAATT
1 AAGTTCAGGTACCAAATT
15186383 AAAAAAAATG
Statistics
Matches: 60, Mismatches: 12, Indels: 11
0.72 0.14 0.13
Matches are distributed among these distances:
27 5 0.08
28 17 0.28
29 16 0.27
31 17 0.28
32 5 0.08
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (28 bp):
AAGTTCAGGTACCAAATTGGGTCAAAAA
Found at i:15186532 original size:2 final size:2
Alignment explanation
Indices: 15186525--15186554 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
15186515 TTTAATTTTG
15186525 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15186555 TTCTTAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15191623 original size:19 final size:18
Alignment explanation
Indices: 15191595--15191632 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
15191585 ATTTTTATAT
15191595 TTAAATATTTAAATAAAA
1 TTAAATATTTAAATAAAA
*
15191613 TTAATATATTTAAATTAAA
1 TTAA-ATATTTAAATAAAA
15191632 T
1 T
15191633 ATTACAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAAATATTTAAATAAAA
Found at i:15197039 original size:21 final size:20
Alignment explanation
Indices: 15197013--15197070 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 20
15197003 GACTTTAGTT
15197013 GTATCGGTAGTTTCATAATAA
1 GTATCGGTAGTTTCATAAT-A
15197034 GTATCGGTAGTTCTGTTCATAATA
1 GTATCGGTAG---T-TTCATAATA
15197058 GTATCGGTAGTTT
1 GTATCGGTAGTTT
15197071 GAATACTTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.06
21 11 0.33
24 12 0.36
25 8 0.24
ACGTcount: A:0.26, C:0.10, G:0.22, T:0.41
Consensus pattern (20 bp):
GTATCGGTAGTTTCATAATA
Found at i:15197177 original size:21 final size:21
Alignment explanation
Indices: 15197131--15197182 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
15197121 ACTTTTAAGC
* *
15197131 ATCAGTAGAAGGATGACTTGT
1 ATCAGTAGAAGGATCACATGT
*
15197152 TTCAGTAGAAGTGA-CACATGT
1 ATCAGTAGAAG-GATCACATGT
15197173 ATCAGTAGAA
1 ATCAGTAGAA
15197183 CTCAAGTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.27
Consensus pattern (21 bp):
ATCAGTAGAAGGATCACATGT
Found at i:15199694 original size:16 final size:16
Alignment explanation
Indices: 15199670--15199702 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15199660 TCCTTACAAA
*
15199670 TTTATTCCTTTAACAT
1 TTTAGTCCTTTAACAT
15199686 TTTAGTCCTTTAACAT
1 TTTAGTCCTTTAACAT
15199702 T
1 T
15199703 AAAATCATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.18, G:0.03, T:0.55
Consensus pattern (16 bp):
TTTAGTCCTTTAACAT
Found at i:15207445 original size:785 final size:785
Alignment explanation
Indices: 15205937--15207504 Score: 3109
Period size: 785 Copynumber: 2.0 Consensus size: 785
15205927 AACTCTTGTA
15205937 TGTATCGATAGAAGTACAGGATAGGAGAGAGGTCGTTTACTAACTTGGGTTGTATTGGTAGTTAC
1 TGTATCGATAGAAGTACAGGATAGGAGAGAGGTCGTTTACTAACTTGGGTTGTATTGGTAGTTAC
15206002 ATAATAAGTATTGGTAGCTTAGATGCTTGTATCGGTAGAAGTTGCAGGGTAAGACTTCTTAGCTC
66 ATAATAAGTATTGGTAGCTTAGATGCTTGTATCGGTAGAAGTTGCAGGGTAAGACTTCTTAGCTC
*
15206067 TCAGGAGTTTTTAGTATCTATAGAAGCATGACTTGTTTCGGTAGAAGTGACACATGTATCAATAC
131 TCAGGAGTTTTTAGTATCGATAGAAGCATGACTTGTTTCGGTAGAAGTGACACATGTATCAATAC
15206132 AACTATCTCTTTATCGGTAGAAGTGACAGTCTGGGAAGCCGACGGGTAGTTTGAAGACTTCGACA
196 AACTATCTCTTTATCGGTAGAAGTGACAGTCTGGGAAGCCGACGGGTAGTTTGAAGACTTCGACA
15206197 TACACTAAAGCAGTATAATCCTCAGATGGTCTTCTTTATAGATGTGAAAATTGATGGGATTGAAG
261 TACACTAAAGCAGTATAATCCTCAGATGGTCTTCTTTATAGATGTGAAAATTGATGGGATTGAAG
15206262 TGGAAGCAAAGGGTTCTTGGGGTGGAATTTCTTTGACGTGGAGAGGAGATATCATTATATCTCTA
326 TGGAAGCAAAGGGTTCTTGGGGTGGAATTTCTTTGACGTGGAGAGGAGATATCATTATATCTCTA
15206327 AAGAGCCATTTTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAG
391 AAGAGCCATTTTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAG
15206392 ATTTATAGAGTTTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGA
456 ATTTATAGAGTTTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGA
15206457 GGTTAGGTTAGAATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCT
521 GGTTAGGTTAGAATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCT
15206522 TTTGAGAAGGTTGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAG
586 TTTGAGAAGGTTGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAG
15206587 ACTGTAGACTTCTAGATGTAGGCTATTCTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGT
651 ACTGTAGACTTCTAGATGTAGGCTATTCTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGT
15206652 GATGATAAGAATGGAGATTTATCGAGTTTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACT
716 GATGATAAGAATGGAGATTTATCGAGTTTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACT
15206717 TGGGT
781 TGGGT
15206722 TGTATCGATAGAAGTACAGGATAGGAGAGAGGTCGTTTACTAACTTGGGTTGTATTGGTAGTTAC
1 TGTATCGATAGAAGTACAGGATAGGAGAGAGGTCGTTTACTAACTTGGGTTGTATTGGTAGTTAC
15206787 ATAATAAGTATTGGTAGCTTAGATGCTTGTATCGGTAGAAGTTGCAGGGTAAGACTTCTTAGCTC
66 ATAATAAGTATTGGTAGCTTAGATGCTTGTATCGGTAGAAGTTGCAGGGTAAGACTTCTTAGCTC
**
15206852 TTTGGAGTTTTTAGTATCGATAGAAGCATGACTTGTTTCGGTAGAAGTGACACATGTATCAATAC
131 TCAGGAGTTTTTAGTATCGATAGAAGCATGACTTGTTTCGGTAGAAGTGACACATGTATCAATAC
15206917 AACTATCTCTTTATCGGTAGAAGTGACAGTCTGGGAAGCCGACGGGTAGTTTGAAGACTTCGACA
196 AACTATCTCTTTATCGGTAGAAGTGACAGTCTGGGAAGCCGACGGGTAGTTTGAAGACTTCGACA
15206982 TACACTAAAGCAGTATAATCCTCAGATGGTCTTCTTTATAGATGTGAAAATTGATGGGATTGAAG
261 TACACTAAAGCAGTATAATCCTCAGATGGTCTTCTTTATAGATGTGAAAATTGATGGGATTGAAG
15207047 TGGAAGCAAAGGGTTCTTGGGGTGGAATTTCTTTGACGTGGAGAGGAGATATCATTATATCTCTA
326 TGGAAGCAAAGGGTTCTTGGGGTGGAATTTCTTTGACGTGGAGAGGAGATATCATTATATCTCTA
15207112 AAGAGCCATTTTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAG
391 AAGAGCCATTTTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAG
15207177 ATTTATAGAGTTTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGA
456 ATTTATAGAGTTTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGA
15207242 GGTTAGGTTAGAATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCT
521 GGTTAGGTTAGAATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCT
15207307 TTTGAGAAGGTTGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAG
586 TTTGAGAAGGTTGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAG
15207372 ACTGTAGACTTCTAGATGTAGGCTATTCTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGT
651 ACTGTAGACTTCTAGATGTAGGCTATTCTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGT
15207437 GATGATAAGAATGGAGATTTATCGAGTTTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACT
716 GATGATAAGAATGGAGATTTATCGAGTTTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACT
15207502 TGG
781 TGG
15207505 AACTTACTGC
Statistics
Matches: 780, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
785 780 1.00
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (785 bp):
TGTATCGATAGAAGTACAGGATAGGAGAGAGGTCGTTTACTAACTTGGGTTGTATTGGTAGTTAC
ATAATAAGTATTGGTAGCTTAGATGCTTGTATCGGTAGAAGTTGCAGGGTAAGACTTCTTAGCTC
TCAGGAGTTTTTAGTATCGATAGAAGCATGACTTGTTTCGGTAGAAGTGACACATGTATCAATAC
AACTATCTCTTTATCGGTAGAAGTGACAGTCTGGGAAGCCGACGGGTAGTTTGAAGACTTCGACA
TACACTAAAGCAGTATAATCCTCAGATGGTCTTCTTTATAGATGTGAAAATTGATGGGATTGAAG
TGGAAGCAAAGGGTTCTTGGGGTGGAATTTCTTTGACGTGGAGAGGAGATATCATTATATCTCTA
AAGAGCCATTTTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAG
ATTTATAGAGTTTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGA
GGTTAGGTTAGAATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCT
TTTGAGAAGGTTGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAG
ACTGTAGACTTCTAGATGTAGGCTATTCTAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGT
GATGATAAGAATGGAGATTTATCGAGTTTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACT
TGGGT
Found at i:15207620 original size:276 final size:277
Alignment explanation
Indices: 15207123--15207676 Score: 950
Period size: 276 Copynumber: 2.0 Consensus size: 277
15207113 AGAGCCATTT
*
15207123 TAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGGGAATGGAGATTTATAGAGT
1 TAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGAGAATGGAGATTTATAGAGT
*
15207188 TTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGGAGGTTAGGTTAG
66 TTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGAAGGTTAGGTTAG
* *
15207253 AATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAATGAAATCATATATTCTTTTGAGAAGGT
131 AATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAACGAAATCACATATTCTTTTGAGAAGGT
* ** * *
15207318 TGGGGGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCTGGAAAGTACTTGTAGACTGTAGACTT
196 TGGGAGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCCAGAAAGTACTTGAAGACTGTAAACTT
15207383 CTAGATGTAGGCTATTC
261 CTAGATGTAGGCTATTC
*
15207400 TAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATA-AGAATGGAGATTTATCGAGT
1 TAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGAGAATGGAGATTTATAGAGT
*
15207464 TTTATGGAGTGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGAAGGTTAGGTTAG
66 TTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGAAGGTTAGGTTAG
* * *
15207529 AATCAAAATTATCCTTGGTTGGTGTGTGGAGATTTTAACGAAATCACGTATTCTTTTGAGAAGGT
131 AATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAACGAAATCACATATTCTTTTGAGAAGGT
*
15207594 TGGGAGTGCCAAGAGA-GAAGAGAAGGATGGTGGCTTTCCAGAAAGTACTTGAAGATTGTAAACT
196 TGGGAGTGCCAAGAGAGGAA-AGAAGGATGGTGGCTTTCCAGAAAGTACTTGAAGACTGTAAACT
15207658 TCTAGATGTAGGCTATTC
260 TCTAGATGTAGGCTATTC
15207676 T
1 T
15207677 GGGATTTGGT
Statistics
Matches: 261, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
275 3 0.01
276 214 0.82
277 44 0.17
ACGTcount: A:0.30, C:0.10, G:0.27, T:0.33
Consensus pattern (277 bp):
TAAGAATCATATTTATGTTTTGGTTAAGGAAAATAGTGATGATAGAGAATGGAGATTTATAGAGT
TTTATGGAGCGCCTTTTGCTAGTGATAGGAATACCACTTGGAACTTACTGCGAAGGTTAGGTTAG
AATCAAAATTATCCTTGGCTGGTGTGTGGAGACTTTAACGAAATCACATATTCTTTTGAGAAGGT
TGGGAGTGCCAAGAGAGGAAAGAAGGATGGTGGCTTTCCAGAAAGTACTTGAAGACTGTAAACTT
CTAGATGTAGGCTATTC
Found at i:15219951 original size:41 final size:41
Alignment explanation
Indices: 15219885--15220072 Score: 191
Period size: 41 Copynumber: 4.6 Consensus size: 41
15219875 CGCCATGAAA
* * * * *
15219885 CCTACTAGGCTCAAGGCCCGTTAAAATAAATTGACACGAAG
1 CCTACTAGGCACAAAGCCCGATAAAATAAATAGACACTAAG
* * * * *
15219926 CCTGCTAGGCACAAAACCCAATAAAATACACTAGA-ACAAAG
1 CCTACTAGGCACAAAGCCCGATAAAATA-AATAGACACTAAG
* * *
15219967 CCTACTAGGAACAAAGCCCGAT-AAATACATCGACACTAAG
1 CCTACTAGGCACAAAGCCCGATAAAATAAATAGACACTAAG
* * * * *
15220007 CCTGCTAGGCTCAAAGCTCGATAAAATACATAGACATTAAG
1 CCTACTAGGCACAAAGCCCGATAAAATAAATAGACACTAAG
15220048 CCTACTAGGCACAAAGCCCGATAAA
1 CCTACTAGGCACAAAGCCCGATAAA
15220073 TATACCATCA
Statistics
Matches: 118, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
39 3 0.03
40 28 0.24
41 83 0.70
42 4 0.03
ACGTcount: A:0.41, C:0.26, G:0.16, T:0.16
Consensus pattern (41 bp):
CCTACTAGGCACAAAGCCCGATAAAATAAATAGACACTAAG
Found at i:15219980 original size:16 final size:15
Alignment explanation
Indices: 15219955--15219984 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
15219945 AATAAAATAC
15219955 ACTAGAACAAAGCCT
1 ACTAGAACAAAGCCT
15219970 ACTAGGAACAAAGCC
1 ACTA-GAACAAAGCC
15219985 CGATAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.27, G:0.17, T:0.10
Consensus pattern (15 bp):
ACTAGAACAAAGCCT
Done.