Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 68 of 163
Found at i:17714749 original size:25 final size:25
Alignment explanation
Indices: 17714711--17714766 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
17714701 AAAACGGTGC
* * * *
17714711 ATAATAAAATAAAAACATATATATAA
1 ATAA-AAAACAAAAACAAAAATAAAA
17714737 ATAAAAAACAAAAACAAAAATAAAA
1 ATAAAAAACAAAAACAAAAATAAAA
17714762 ATAAA
1 ATAAA
17714767 TAAATATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (25 bp):
ATAAAAAACAAAAACAAAAATAAAA
Found at i:17718180 original size:20 final size:19
Alignment explanation
Indices: 17718138--17718182 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
17718128 ATTAGAATGT
*
17718138 AAAAATTAAATTAAAAACCA
1 AAAAATTAAAATAAAAA-CA
* *
17718158 AAATATTAAAATAAAAATA
1 AAAAATTAAAATAAAAACA
17718177 AAAAAT
1 AAAAAT
17718183 AACTAAATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAATAAAAACA
Found at i:17723230 original size:6 final size:6
Alignment explanation
Indices: 17723219--17723243 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
17723209 ACTAATCAAA
17723219 TTCTTG TTCTTG TTCTTG TTCTTG T
1 TTCTTG TTCTTG TTCTTG TTCTTG T
17723244 GGCCTTTCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.16, T:0.68
Consensus pattern (6 bp):
TTCTTG
Found at i:17726446 original size:18 final size:19
Alignment explanation
Indices: 17726397--17726447 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
17726387 TTGAACACTC
*
17726397 TTCTTTTTCAATCTCAACT
1 TTCTTTTTCATTCTCAACT
17726416 TT-TTTTTCATTCTCAA-T
1 TTCTTTTTCATTCTCAACT
*
17726433 TTCTTTTTCGTTCTC
1 TTCTTTTTCATTCTC
17726448 CCGTACTCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.10
18 24 0.83
19 2 0.07
ACGTcount: A:0.14, C:0.24, G:0.02, T:0.61
Consensus pattern (19 bp):
TTCTTTTTCATTCTCAACT
Found at i:17730706 original size:21 final size:20
Alignment explanation
Indices: 17730680--17730731 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
17730670 AGATTTGTAC
*
17730680 CGATACAAGTGACAGTTCTA
1 CGATACAAGTGACACTTCTA
*
17730700 TCGATACAAGTGACTCTTCTA
1 -CGATACAAGTGACACTTCTA
17730721 CTGATACAAGT
1 C-GATACAAGT
17730732 CTTACCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.04
21 27 0.96
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (20 bp):
CGATACAAGTGACACTTCTA
Found at i:17732904 original size:14 final size:14
Alignment explanation
Indices: 17732882--17732929 Score: 69
Period size: 14 Copynumber: 3.3 Consensus size: 14
17732872 TTCTGCGATA
*
17732882 TTTTGATCCTTTAT
1 TTTTAATCCTTTAT
17732896 TTTTAATCCTTTATTT
1 TTTTAATCCTTTA--T
17732912 TTTTAATCCTTTAT
1 TTTTAATCCTTTAT
17732926 TTTT
1 TTTT
17732930 TTTCTTCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
14 17 0.55
16 14 0.45
ACGTcount: A:0.17, C:0.12, G:0.02, T:0.69
Consensus pattern (14 bp):
TTTTAATCCTTTAT
Found at i:17732932 original size:17 final size:16
Alignment explanation
Indices: 17732882--17732931 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
17732872 TTCTGCGATA
*
17732882 TTTTGATCCTTTA--T
1 TTTTAATCCTTTATTT
17732896 TTTTAATCCTTTATTT
1 TTTTAATCCTTTATTT
17732912 TTTTAATCCTTTATTT
1 TTTTAATCCTTTATTT
17732928 TTTT
1 TTTT
17732932 TCTTCTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
14 12 0.36
16 21 0.64
ACGTcount: A:0.16, C:0.12, G:0.02, T:0.70
Consensus pattern (16 bp):
TTTTAATCCTTTATTT
Found at i:17743974 original size:76 final size:76
Alignment explanation
Indices: 17743839--17743982 Score: 211
Period size: 76 Copynumber: 1.9 Consensus size: 76
17743829 AGCGAAGCAT
*
17743839 AATGTGAGTGAAACTTCAAACCTCCATCTTTCTGATGAGATACAGAGAAATGGACCAAAACAATG
1 AATGTGAGTGAAACTTCAAACCTCCATCTTTCTGATAAGATACAGAGAAATGGACCAAAACAATG
17743904 AAGTAAAGCTC
66 AAGTAAAGCTC
* * * *
17743915 AATGTGAGTGAAACTTCAAACC-CCAATC-TTCTTGATAAGATATAGAGAAGTGGATCAAAATAA
1 AATGTGAGTGAAACTTCAAACCTCC-ATCTTTC-TGATAAGATACAGAGAAATGGACCAAAACAA
17743978 TGAAG
64 TGAAG
17743983 CGGTCATCTT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
75 5 0.08
76 56 0.92
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.24
Consensus pattern (76 bp):
AATGTGAGTGAAACTTCAAACCTCCATCTTTCTGATAAGATACAGAGAAATGGACCAAAACAATG
AAGTAAAGCTC
Found at i:17744011 original size:48 final size:48
Alignment explanation
Indices: 17743940--17744032 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
17743930 TCAAACCCCA
* * *
17743940 ATCTTCTTGATAAGATATAGAGAAGTGGATCAAAATAATGAAGCGGTC
1 ATCTTCCTGATAAGATATAGAGAAGTGGACCAAAACAATGAAGCGGTC
*
17743988 ATCTTCCTGATGAGATATAGAGAAGTGGACCAAAACAATGAAGCG
1 ATCTTCCTGATAAGATATAGAGAAGTGGACCAAAACAATGAAGCG
17744033 AAGCTCAATG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (48 bp):
ATCTTCCTGATAAGATATAGAGAAGTGGACCAAAACAATGAAGCGGTC
Found at i:17744088 original size:124 final size:124
Alignment explanation
Indices: 17743863--17744962 Score: 1593
Period size: 124 Copynumber: 8.9 Consensus size: 124
17743853 TTCAAACCTC
* * **
17743863 CATCTTTCTGATGAGATACAGAGAAATGGACCAAAACAATGAAGTAAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * * * * *
17743928 CTTCAAACCCCAATCTTCTTGATAAGATATAGAGAAGTGGATCAAAATAATGAAGCGGT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* *
17743987 CATCTTCCTGATGAGATATAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTAAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* *
17744052 CTTCAAACTCCCATCTTCCTGATAAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* * * *
17744111 CATCTTTCTTATAAGATATAGAGAA---GACCAAAACAATGAAGCGAAGCTCAAT-TGGAGTGAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGT-GAGTGAA
* *
17744172 ACTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGCATCAAAATGATGAAGCGGT
65 ACTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* * *
17744232 CATCTTCCTGATGAGATACAAAAAAGTGGACCAAAACAATGAAGCGAAGCTTAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * *
17744297 CTTCAAACCCCCATCTTCCTGATGAGATACAGAGAA-TGGGATCAAAATGATGAAGTGAT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGT-GGATCAAAATGATGAAGCGGT
* *
17744356 CATCTTCTTGATAAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * * * * *
17744421 CTTCAAACCCCCATCTTCCTAATGGGATACAGAGAAGGGGATCAAAATGACGAAGCAGT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* * * *
17744480 CATCTTCCTGATGAGATATAGAGAAGTGGACCAAAACAATAAAGTGAAGCTCAATATGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * *
17744545 CTTCAAACCCCCATCTTCCTAATGAGATATAAAGAAGTGGATCAAAATGATGAAGCGAT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* * * * *
17744604 CATCTTCCTGATGAGATACAGAGAAGTGGACCGAAACAATGAAACAAAACTCAATGTAAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * * * *
17744669 CTTCAAAACCCCATCTTCTTGATGAGATACAGAGAAATGGATCAAAATGATGAAGCGAT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* *
17744728 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATGAAGTGAAGCTCAATG-GAAGTGAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTG-AGTGAA
* * * *
17744792 ACTTCAAACCCTCATCTTCCTGATGAGATACAAAGAAGTTGATTAAAATGATAAAGCGGT
65 ACTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
* *
17744852 CATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
17744917 CTTCAAACCCCCATCTTCCTGATGAGATACAAAG-AGTGGATCAAAA
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAA
17744963 CAATAAAGCG
Statistics
Matches: 872, Mismatches: 95, Indels: 19
0.88 0.10 0.02
Matches are distributed among these distances:
120 1 0.00
121 108 0.12
123 11 0.01
124 750 0.86
125 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (124 bp):
CATCTTCCTGATGAGATACAGAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
Found at i:17744259 original size:48 final size:48
Alignment explanation
Indices: 17744184--17744277 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 48
17744174 TTCAAACCCC
* * * **
17744184 CATCTTCTTGATGAGATACAAAGAAGTGCATCAAAATGATGAAGCGGT
1 CATCTTCCTGATGAGATACAAAAAAGTGCACCAAAACAATGAAGCGGT
*
17744232 CATCTTCCTGATGAGATACAAAAAAGTGGACCAAAACAATGAAGCG
1 CATCTTCCTGATGAGATACAAAAAAGTGCACCAAAACAATGAAGCG
17744278 AAGCTTAATG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (48 bp):
CATCTTCCTGATGAGATACAAAAAAGTGCACCAAAACAATGAAGCGGT
Found at i:17744398 original size:48 final size:48
Alignment explanation
Indices: 17744308--17744399 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
17744298 TTCAAACCCC
* * **
17744308 CATCTTCCTGATGAGATACAGAGAATGGGATCAAAATGATGAAGTGAT
1 CATCTTCCTGATAAGATACAGAGAATGGGACCAAAACAATGAAGTGAT
*
17744356 CATCTTCTTGATAAGATACAGAGAA-GTGGACCAAAACAATGAAG
1 CATCTTCCTGATAAGATACAGAGAATG-GGACCAAAACAATGAAG
17744400 CGAAGCTCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 1 0.03
48 37 0.97
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (48 bp):
CATCTTCCTGATAAGATACAGAGAATGGGACCAAAACAATGAAGTGAT
Found at i:17744770 original size:48 final size:48
Alignment explanation
Indices: 17744680--17744771 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
17744670 TTCAAAACCC
* **
17744680 CATCTTCTTGATGAGATACAGAGAAATGGATCAAAATGATGAAGCGAT
1 CATCTTCCTGATGAGATACAGAGAAATGGATCAAAACAATGAAGCGAT
*
17744728 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATGAAG
1 CATCTTCCTGATGAGATACAGAGAAATGGATCAAAACAATGAAG
17744772 TGAAGCTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (48 bp):
CATCTTCCTGATGAGATACAGAGAAATGGATCAAAACAATGAAGCGAT
Found at i:17744897 original size:48 final size:48
Alignment explanation
Indices: 17744803--17744897 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
17744793 CTTCAAACCC
* * ** **
17744803 TCATCTTCCTGATGAGATACAAAGAAGTTGATTAAAATGATAAAGCGG
1 TCATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATAAAGCGG
*
17744851 TCATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCG
1 TCATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATAAAGCG
17744898 AAGCTCAATG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (48 bp):
TCATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATAAAGCGG
Found at i:17744976 original size:75 final size:76
Alignment explanation
Indices: 17744852--17745038 Score: 313
Period size: 75 Copynumber: 2.5 Consensus size: 76
17744842 ATAAAGCGGT
* * *
17744852 CATCTTCATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
17744917 CTTCAAACCCC
66 CTTCAAACCCC
17744928 CATCTTCCTGATGAGATACAAAG-AGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
17744992 CTTCAAACCCC
66 CTTCAAACCCC
* * *
17745003 CATCTTTCTGATGAGGTGCAAAGAAGTGGATCAAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAA
17745039 TGATGAAGCA
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
75 70 0.67
76 34 0.33
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (76 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
CTTCAAACCCC
Found at i:17744998 original size:199 final size:200
Alignment explanation
Indices: 17744728--17745162 Score: 703
Period size: 199 Copynumber: 2.2 Consensus size: 200
17744718 ATGAAGCGAT
* * *
17744728 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATGAAGTGAAGCTCAATGGAAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATGGAAGTGAAA
* * * *
17744793 CTTCAAACCCTCATCTTCCTGATGAGATACAAAGAAGTTGATTAAAATGATAAAGCGGTCATCTT
66 CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCAGTCATCTT
*
17744858 CATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAA
131 CATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATATGAGTGAAACTTCAA
17744923 ACCCC
196 ACCCC
17744928 CATCTTCCTGATGAGATACAAAG-AGTGGATCAAAACAATAAAGCGAAGCTCAATGTG-AGTGAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATG-GAAGTGAA
* * * *
17744991 ACTTCAAACCCCCATCTTTCTGATGAGGTGCAAAGAAGTGGATCAAAATGATGAAGCAGTCATCT
65 ACTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCAGTCATCT
* * *
17745056 TCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCGAAGCTCAATATGAGTGAAACTTCA
130 TCATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATATGAGTGAAACTTCA
17745121 AACCCC
195 AACCCC
*
17745127 CATCTTCTTGATGAGATACAAAGAAGTGGATCAAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAA
17745163 TGATGAAGCG
Statistics
Matches: 217, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
199 182 0.84
200 35 0.16
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.22
Consensus pattern (200 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATGGAAGTGAAA
CTTCAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCAGTCATCTT
CATGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATATGAGTGAAACTTCAA
ACCCC
Found at i:17745035 original size:323 final size:324
Alignment explanation
Indices: 17744604--17745296 Score: 1063
Period size: 323 Copynumber: 2.1 Consensus size: 324
17744594 ATGAAGCGAT
* * * *
17744604 CATCTTCCTGATGAGATACAGAGAAGTGGACCGAAACAATGAAA-CAAAACTCAATGTAAGTGAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAAT-AAAGCGAAACTCAATGTAAGTGAA
*
17744668 ACTTCAAAACCCCATCTTCTTGATGAGATACAGAGAAATGGATCAAAATGATGAAGC-GATCATC
65 ACTTCAAAACCCCATCTTCTTGATGAGATACAAAGAAATGGATCAAAATGATGAAGCAG-TCATC
* * *
17744732 TTCCTGATGAGATACAGAGAAGTGGATCAAAACAATGAAGTGAAGCTCAAT-GGAAGTGAAACTT
129 TTCCTGATGAGATACAAAGAAGTGGAGCAAAACAATGAAGCGAAGCTCAATAGG-AGTGAAACTT
* * *
17744796 CAAACCCTCATCTTCCTGATGAGATACAAAGAAGTTGATTAAAATGATAAAGCGGTCATCTTCAT
193 CAAACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCGGTCATCTTCAT
*
17744861 GATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAACC
258 GATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAACTTCAAACC
17744926 CC
323 CC
* *
17744928 CATCTTCCTGATGAGATACAAAG-AGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAACTCAATGTAAGTGAAA
* * * *
17744992 CTTCAAACCCCCATCTT-TCTGATGAGGTGCAAAGAAGTGGATCAAAATGATGAAGCAGTCATCT
66 CTTCAAAACCCCATCTTCT-TGATGAGATACAAAGAAATGGATCAAAATGATGAAGCAGTCATCT
* *
17745056 TCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCGAAGCTCAATATGAGTGAAACTTCA
130 TCCTGATGAGATACAAAGAAGTGGAGCAAAACAATGAAGCGAAGCTCAATAGGAGTGAAACTTCA
* * *
17745121 AACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGTCATCTTCCTGA
195 AACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCGGTCATCTTCATGA
* *
17745186 TGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAACTTTAAACCCT
260 TGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAACTTCAAACCCC
* * *
17745251 CATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATGAAGCG
1 CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCG
17745297 GTCATCTTCA
Statistics
Matches: 336, Mismatches: 28, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
322 4 0.01
323 289 0.86
324 43 0.13
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (324 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGATCAAAACAATAAAGCGAAACTCAATGTAAGTGAAA
CTTCAAAACCCCATCTTCTTGATGAGATACAAAGAAATGGATCAAAATGATGAAGCAGTCATCTT
CCTGATGAGATACAAAGAAGTGGAGCAAAACAATGAAGCGAAGCTCAATAGGAGTGAAACTTCAA
ACCCCCATCTTCCTGATGAGATACAAAGAAGTGGATCAAAATGATAAAGCGGTCATCTTCATGAT
GAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAACTTCAAACCCC
Found at i:17745067 original size:447 final size:448
Alignment explanation
Indices: 17744480--17745409 Score: 1504
Period size: 447 Copynumber: 2.1 Consensus size: 448
17744470 ACGAAGCAGT
* * *
17744480 CATCTTCCTGATGAGATATAGAGAAGTGGACCAAAACAATAAAGTGAAGCTCAATATGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATATGAGTGAAA
*
17744545 CTTCAAACCCCCATCTTCCTAATGAGATATAAAGAAGTGGATCAAAATGATGAAGCGATCATCTT
66 CTTCAAACCCCCATCTTCCTAATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGATCATCTT
* * *
17744610 CCTGATGAGATACAGAGAAGTGGACCGAAACAATGAAACAAAACTCAATGTAAGTGAAACTTCAA
131 CCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAACAAAACTCAATATAAGTGAAACTTCAA
*
17744675 AACCCCATCTTCTTGATGAGATACAGAGAAATGGATCAAAATGATGAAGCGATCATCTTCCTGAT
196 AACCCCATCTTCTTGATGAGATACAAAGAAATGGATCAAAATGATGAAGCGATCATCTTCCTGAT
* * *
17744740 GAGATACAGAGAAGTGGATCAAAACAATGAAGTGAAGCTCAATGGAAGTGAAACTTCAAACCCTC
261 GAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGGAAGTGAAACTTCAAACCCTC
* *
17744805 ATCTTCCTGATGAGATACAAAGAAGTTGATTAAAATGATAAAGCGGTCATCTTCATGATGAGATA
326 ATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATAAAGCGGTCATCTTCATGATGAGATA
* *
17744870 CAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAACTTCAAACCCC
391 CAAAGAAGTGAACCAAAACAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACCCC
* *
17744928 CATCTTCCTGATGAGATACAAAG-AGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATATGAGTGAAA
* * * *
17744992 CTTCAAACCCCCATCTTTCTGATGAGGTGCAAAGAAGTGGATCAAAATGATGAAGC-AGTCATCT
66 CTTCAAACCCCCATCTTCCTAATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGA-TCATCT
* * * * * *
17745056 TCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCGAAGCTCAATATGAGTGAAACTTCA
130 TCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAACAAAACTCAATATAAGTGAAACTTCA
* * *
17745121 AACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGTCATCTTCCTGA
195 AAACCCCATCTTCTTGATGAGATACAAAGAAATGGATCAAAATGATGAAGCGATCATCTTCCTGA
* *
17745186 TGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAACTTTAAACCCT
260 TGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGGAAGTGAAACTTCAAACCCT
*
17745251 CATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATGAAGCGGTCATCTTCATGATGAGAT
325 CATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATAAAGCGGTCATCTTCATGATGAGAT
* *
17745316 ACAAAGAAGTGAATCAAAACAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACCCT
390 ACAAAGAAGTGAACCAAAACAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACCCC
* *
17745375 TATCTTCTTGATGAGATACAGAGAAGTGGATCAAA
1 CATCTTCCTGATGAGATACAGAGAAGTGGATCAAA
17745410 CAACGAAACG
Statistics
Matches: 442, Mismatches: 38, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
446 1 0.00
447 409 0.93
448 32 0.07
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.22
Consensus pattern (448 bp):
CATCTTCCTGATGAGATACAGAGAAGTGGATCAAAACAATAAAGCGAAGCTCAATATGAGTGAAA
CTTCAAACCCCCATCTTCCTAATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGATCATCTT
CCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAACAAAACTCAATATAAGTGAAACTTCAA
AACCCCATCTTCTTGATGAGATACAAAGAAATGGATCAAAATGATGAAGCGATCATCTTCCTGAT
GAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGGAAGTGAAACTTCAAACCCTC
ATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATAAAGCGGTCATCTTCATGATGAGATA
CAAAGAAGTGAACCAAAACAATGAAGCAAAGCTCAATGTGAGTGAAACTTCAAACCCC
Found at i:17745068 original size:123 final size:123
Alignment explanation
Indices: 17744928--17745643 Score: 958
Period size: 124 Copynumber: 5.8 Consensus size: 123
17744918 TTCAAACCCC
* *
17744928 CATCTTCCTGATGAGATACAAAG-AGTGGATCAAAACAATAAAGCGAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * *
17744992 CTTCAAACCCCCATCTT-TCTGATGAGGTGCAAAGAAGTGGATCAAAATGATGAAGCAGT
66 CTTCAAACCCCCATCTTCT-TGATGAGATACAAAGAAGTGGATCAAAAT-ATGAAGCGGT
* * *
17745051 CATCTTCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCGAAGCTCAATATGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
17745116 CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
66 CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAAT-ATGAAGCGGT
*
17745175 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTAAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * * *
17745240 CTTTAAACCCTCATCTTCCTGATGAGATACAAAGAAGTTGATCAAAATAATGAAGCGGT
66 CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAAT-ATGAAGCGGT
* * * *
17745299 CATCTTCATGATGAGATACAAAGAAGTGAATCAAAACAATGAAGCAAAGCTCAATGTGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
** * * * *
17745364 CTTCAAACCCTTATCTTCTTGATGAGATACAGAGAAGTGGATCAAACA-ACGAAACGAT
66 CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAA-ATATGAAGCGGT
* * * * * * *
17745422 CATCTTCCTAATGAGATACAGAGAAGTGAACCAAAATAATGAAGCGAAGCTTAATATAAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * *
17745487 CTTCAAACCACCATCTTCTTGATGAGATACAGAGAAGTGGATCAAACA-ACGAAGCGGT
66 CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAA-ATATGAAGCGGT
* * * * *
17745545 CATCTTCCTGATAAGATACAGAGAAGTGGACCAAAACAATGAAGCGGAGCTCAAGGAGAGTGAAA
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
* * *
17745610 CTCCAAA-CCCCATCGTCCTT-ATGAGATATAAAGA
66 CTTCAAACCCCCATC-TTCTTGATGAGATACAAAGA
17745644 GGTGAACCAA
Statistics
Matches: 531, Mismatches: 58, Indels: 9
0.89 0.10 0.02
Matches are distributed among these distances:
122 18 0.03
123 204 0.38
124 307 0.58
125 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.21
Consensus pattern (123 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGAAGCTCAATGTGAGTGAAA
CTTCAAACCCCCATCTTCTTGATGAGATACAAAGAAGTGGATCAAAATATGAAGCGGT
Found at i:17745074 original size:48 final size:48
Alignment explanation
Indices: 17745003--17745095 Score: 141
Period size: 48 Copynumber: 1.9 Consensus size: 48
17744993 TTCAAACCCC
* * * * *
17745003 CATCTTTCTGATGAGGTGCAAAGAAGTGGATCAAAATGATGAAGCAGT
1 CATCTTCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCAGT
17745051 CATCTTCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGC
1 CATCTTCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGC
17745096 GAAGCTCAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.23
Consensus pattern (48 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGAGCAAAATAATGAAGCAGT
Found at i:17745198 original size:48 final size:48
Alignment explanation
Indices: 17745127--17745220 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
17745117 TTCAAACCCC
* * **
17745127 CATCTTCTTGATGAGATACAAAGAAGTGGATCAAAATGATGAAGCGGT
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGGT
17745175 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCG
1 CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCG
17745221 AAGCTCAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.21
Consensus pattern (48 bp):
CATCTTCCTGATGAGATACAAAGAAGTGGACCAAAACAATGAAGCGGT
Found at i:17745321 original size:48 final size:48
Alignment explanation
Indices: 17745250--17745343 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
17745240 CTTTAAACCC
* *
17745250 TCATCTTCCTGATGAGATACAAAGAAGTTG-ATCAAAATAATGAAGCGG
1 TCATCTTCATGATGAGATACAAAGAAG-TGAATCAAAACAATGAAGCGG
17745298 TCATCTTCATGATGAGATACAAAGAAGTGAATCAAAACAATGAAGC
1 TCATCTTCATGATGAGATACAAAGAAGTGAATCAAAACAATGAAGC
17745344 AAAGCTCAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
47 2 0.05
48 41 0.95
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.23
Consensus pattern (48 bp):
TCATCTTCATGATGAGATACAAAGAAGTGAATCAAAACAATGAAGCGG
Found at i:17745567 original size:47 final size:48
Alignment explanation
Indices: 17745498--17745591 Score: 145
Period size: 47 Copynumber: 2.0 Consensus size: 48
17745488 TTCAAACCAC
* * *
17745498 CATCTTCTTGATGAGATACAGAGAAGTGGATC-AAACAACGAAGCGGT
1 CATCTTCCTGATAAGATACAGAGAAGTGGACCAAAACAACGAAGCGGT
*
17745545 CATCTTCCTGATAAGATACAGAGAAGTGGACCAAAACAATGAAGCGG
1 CATCTTCCTGATAAGATACAGAGAAGTGGACCAAAACAACGAAGCGG
17745592 AGCTCAAGGA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
47 29 0.69
48 13 0.31
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.19
Consensus pattern (48 bp):
CATCTTCCTGATAAGATACAGAGAAGTGGACCAAAACAACGAAGCGGT
Found at i:17746642 original size:18 final size:17
Alignment explanation
Indices: 17746619--17746661 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
17746609 TTATATTTCG
* *
17746619 AATATAAAATAAACTATA
1 AATATAAAACAAAATA-A
17746637 AATATAAAACAAAATAA
1 AATATAAAACAAAATAA
17746654 AATATAAA
1 AATATAAA
17746662 GTTGGGTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (17 bp):
AATATAAAACAAAATAA
Found at i:17747398 original size:30 final size:30
Alignment explanation
Indices: 17747364--17747513 Score: 119
Period size: 30 Copynumber: 5.0 Consensus size: 30
17747354 TTTTGATCTC
*
17747364 TGAACTTTCTAAAAATTTAGATTTAACCCT
1 TGAACTTTCTAAAAATTTAGATTTGACCCT
* * *
17747394 TGAACTTCCCAAAAATTT-GAATTTGACCCC
1 TGAACTTTCTAAAAATTTAG-ATTTGACCCT
** * * * *
17747424 CAAACTTTCCAAACATTAAGTTTTGACACC-
1 TGAACTTTCTAAAAATTTAGATTTGAC-CCT
*
17747454 T-AAGCTTCCTAAAAATTTAGATTTGACCCT
1 TGAA-CTTTCTAAAAATTTAGATTTGACCCT
* *
17747484 AGAAC-TTCTCAAAAATTTAAATTTGACCCT
1 TGAACTTTCT-AAAAATTTAGATTTGACCCT
17747514 CAAACTTTTC
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
29 8 0.09
30 81 0.86
31 5 0.05
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (30 bp):
TGAACTTTCTAAAAATTTAGATTTGACCCT
Found at i:17747430 original size:60 final size:60
Alignment explanation
Indices: 17747365--17747513 Score: 146
Period size: 60 Copynumber: 2.5 Consensus size: 60
17747355 TTTGATCTCT
*
17747365 GAACTTTCTAAAAATTTAGATTTAACCCTTGAA-CTTCCCAAAAATTT-GAATTTGACCCCCA
1 GAACTTTCTAAAAATTTAGATTTGACCCTT-AAGCTTCCCAAAAATTTAG-ATTTGA-CCCCA
* * * * * *
17747426 -AACTTTCCAAACATTAAGTTTTGACACC-TAAGCTTCCTAAAAATTTAGATTTGACCCTA
1 GAACTTTCTAAAAATTTAGATTTGAC-CCTTAAGCTTCCCAAAAATTTAGATTTGACCCCA
*
17747485 GAAC-TTCTCAAAAATTTAAATTTGACCCT
1 GAACTTTCT-AAAAATTTAGATTTGACCCT
17747514 CAAACTTTTC
Statistics
Matches: 70, Mismatches: 12, Indels: 13
0.74 0.13 0.14
Matches are distributed among these distances:
59 11 0.16
60 56 0.80
61 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.08, T:0.34
Consensus pattern (60 bp):
GAACTTTCTAAAAATTTAGATTTGACCCTTAAGCTTCCCAAAAATTTAGATTTGACCCCA
Found at i:17747469 original size:90 final size:90
Alignment explanation
Indices: 17747329--17747521 Score: 264
Period size: 90 Copynumber: 2.1 Consensus size: 90
17747319 TTACGTTTTA
* * * *
17747329 ACCCCCAAACTATCCAAAAATTAATTTTTGATCTCTGAACTTTCTAAAAATTTAGATTTAACCCT
1 ACCCCCAAACTTTCCAAAAATTAAGTTTTGATCCCTGAACTTCCTAAAAATTTAGATTTAACCCT
* *
17747394 TGAACTTCCCAAAAATTTGAATTTG
66 AGAACTTCCCAAAAATTTAAATTTG
* *
17747419 ACCCCCAAACTTTCCAAACATTAAGTTTTGA-CACCT-AAGCTTCCTAAAAATTTAGATTTGACC
1 ACCCCCAAACTTTCCAAAAATTAAGTTTTGATC-CCTGAA-CTTCCTAAAAATTTAGATTTAACC
*
17747482 CTAGAACTTCTCAAAAATTTAAATTTG
64 CTAGAACTTCCCAAAAATTTAAATTTG
*
17747509 ACCCTCAAACTTT
1 ACCCCCAAACTTT
17747522 TCAATATTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
89 3 0.03
90 88 0.97
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (90 bp):
ACCCCCAAACTTTCCAAAAATTAAGTTTTGATCCCTGAACTTCCTAAAAATTTAGATTTAACCCT
AGAACTTCCCAAAAATTTAAATTTG
Found at i:17750658 original size:25 final size:24
Alignment explanation
Indices: 17750629--17750677 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
17750619 ATTTTAAATT
* *
17750629 TTATATTGATCTTAAATAAATATAA
1 TTATATTAATATTAAATAAA-ATAA
17750654 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATTAAATAAAATAA
17750678 AAATTCCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
TTATATTAATATTAAATAAAATAA
Found at i:17751223 original size:52 final size:52
Alignment explanation
Indices: 17751105--17751225 Score: 133
Period size: 52 Copynumber: 2.3 Consensus size: 52
17751095 ATTTTAATAA
** *
17751105 ATATTTTAAAATTTTATATATTATTTTTTGGCAACAATCATTTTTTATTTTAT
1 ATATTTTTTAATTTT-TATATTATTTTTTGGCAACAATCATTTTGTATTTTAT
*
17751158 ATATTTTTTAATTTTTATTTTATTTTTT-G-AA-AAT-ATTTATGTATTGTTAT
1 ATATTTTTTAATTTTTATATTATTTTTTGGCAACAATCATTT-TGTATT-TTAT
17751208 ATATTTCTTTGAATTTTT
1 ATATTT-TTT-AATTTTT
17751226 TAAAATTATG
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
48 4 0.07
49 8 0.13
50 12 0.20
51 4 0.07
52 19 0.32
53 13 0.22
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (52 bp):
ATATTTTTTAATTTTTATATTATTTTTTGGCAACAATCATTTTGTATTTTAT
Found at i:17762689 original size:3 final size:3
Alignment explanation
Indices: 17762683--17762712 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
17762673 ATAGGTGAGT
17762683 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
17762713 AATAATCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:17765479 original size:28 final size:28
Alignment explanation
Indices: 17765342--17765499 Score: 181
Period size: 28 Copynumber: 5.6 Consensus size: 28
17765332 GGCAAAGCAA
* * *
17765342 AATGTCTCTACGAAGACCATTGTTATTG
1 AATGTCTCTACGAAGACTACTATTATTG
* * *
17765370 AATGTCTCTATGAAAACTACTAATATTG
1 AATGTCTCTACGAAGACTACTATTATTG
*
17765398 AATGTCTCTACGAAGACTACTAATATTG
1 AATGTCTCTACGAAGACTACTATTATTG
* * *
17765426 AATGTCTCTATGAATACTACTATTACTG
1 AATGTCTCTACGAAGACTACTATTATTG
* * * * *
17765454 AATGTTTCTACGAAGACCACTGTTACTA
1 AATGTCTCTACGAAGACTACTATTATTG
17765482 AATGTCTCTACGAAGACT
1 AATGTCTCTACGAAGACT
17765500 CTTGTGTGTA
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 110 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (28 bp):
AATGTCTCTACGAAGACTACTATTATTG
Found at i:17765486 original size:56 final size:56
Alignment explanation
Indices: 17765342--17765491 Score: 210
Period size: 56 Copynumber: 2.7 Consensus size: 56
17765332 GGCAAAGCAA
* *
17765342 AATGTCTCTACGAAGACCATTGTTATTGAATGTCTCTATGAAAACTACTAATATTG
1 AATGTCTCTACGAAGACCACTGTTATTGAATGTCTCTATGAAAACTACTAATACTG
* ** * *
17765398 AATGTCTCTACGAAGACTACTAATATTGAATGTCTCTATGAATACTACTATTACTG
1 AATGTCTCTACGAAGACCACTGTTATTGAATGTCTCTATGAAAACTACTAATACTG
* * *
17765454 AATGTTTCTACGAAGACCACTGTTACTAAATGTCTCTA
1 AATGTCTCTACGAAGACCACTGTTATTGAATGTCTCTA
17765492 CGAAGACTCT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 81 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (56 bp):
AATGTCTCTACGAAGACCACTGTTATTGAATGTCTCTATGAAAACTACTAATACTG
Found at i:17770753 original size:14 final size:16
Alignment explanation
Indices: 17770720--17770769 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 16
17770710 CTCCAACTGA
17770720 AATTAAAATAAAATTTT
1 AATT-AAATAAAATTTT
17770737 AATTAAAT-AAA-TTT
1 AATTAAATAAAATTTT
17770751 AATTAAATGAAAATTTT
1 AATTAAAT-AAAATTTT
17770768 AA
1 AA
17770770 AAAAATTACA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 11 0.37
15 3 0.10
16 7 0.23
17 9 0.30
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (16 bp):
AATTAAATAAAATTTT
Found at i:17772234 original size:57 final size:58
Alignment explanation
Indices: 17772102--17772235 Score: 162
Period size: 58 Copynumber: 2.3 Consensus size: 58
17772092 TTATTTCTAC
** * **
17772102 ATTTATGTTGTCTTAATGTAATTTATAGCTACTGTCAAAATGTTTCTTTAATGTGCAT
1 ATTTATGTTGTCAAAATGTAATTTATAGCTACTGTCAAAATGTCTCTTTAATGCACAT
* * ** * *
17772160 ATTTATGTTGTCCAAATGTAATTTATAGTTGTTGTTATAATGTCTC-TTAATGCACAT
1 ATTTATGTTGTCAAAATGTAATTTATAGCTACTGTCAAAATGTCTCTTTAATGCACAT
17772217 ATTTATGTTGTCAAAATGT
1 ATTTATGTTGTCAAAATGT
17772236 GAATAATGAT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
57 27 0.42
58 38 0.58
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (58 bp):
ATTTATGTTGTCAAAATGTAATTTATAGCTACTGTCAAAATGTCTCTTTAATGCACAT
Found at i:17776559 original size:21 final size:20
Alignment explanation
Indices: 17776529--17776568 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
17776519 TTCAAAAATT
17776529 GTAAAAATATAAAAACTAAAA
1 GTAAAAATAT-AAAACTAAAA
* *
17776550 GTAAACATATTAAACTAAA
1 GTAAAAATATAAAACTAAA
17776569 TGAACTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (20 bp):
GTAAAAATATAAAACTAAAA
Found at i:17783994 original size:115 final size:113
Alignment explanation
Indices: 17783841--17784097 Score: 372
Period size: 115 Copynumber: 2.3 Consensus size: 113
17783831 GATACCTTTG
* * * * *
17783841 TTTTTGCTAAATTTTTTCAAACATCGAAGCTTAAATTGGTATCGATACCA-AGTAAGGGTGTCGA
1 TTTTTGCTAAATTTTTTCAAACATCGAAGATCAAATTGGTATCGATACCAGA-CAAAGGTATCGA
* *
17783905 TACTTTGACCCTGGTATCGATACTATGGAAAGGGTATCAACACCTTTGTTT
65 TACTTTGACCCTGGTATCGATACTATGGAAAGGGTATCAACA-CATT-TAT
*
17783956 TTTTTGCTAAATTTTTTCAAACATCGAAGATCAAATTGGTATTGATACCAGACAAAGGTATCGAT
1 TTTTTGCTAAATTTTTTCAAACATCGAAGATCAAATTGGTATCGATACCAGACAAAGGTATCGAT
* *
17784021 ACTTTGACCCTGGTATCGATACTATGGAAAGGGTATCGATACATTTAT
66 ACTTTGACCCTGGTATCGATACTATGGAAAGGGTATCAACACATTTAT
* *
17784069 TTTTTGCTAATTTTTTTCAAATATCGAAG
1 TTTTTGCTAAATTTTTTCAAACATCGAAG
17784098 CTAAAATTTA
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
113 29 0.22
114 3 0.02
115 96 0.74
116 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (113 bp):
TTTTTGCTAAATTTTTTCAAACATCGAAGATCAAATTGGTATCGATACCAGACAAAGGTATCGAT
ACTTTGACCCTGGTATCGATACTATGGAAAGGGTATCAACACATTTAT
Found at i:17785670 original size:13 final size:14
Alignment explanation
Indices: 17785641--17785670 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17785631 TTCAGTACAT
17785641 TGACATTTAACCTC
1 TGACATTTAACCTC
17785655 TGACATTTAA-CTC
1 TGACATTTAACCTC
17785668 TGA
1 TGA
17785671 TTGGATTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:17788145 original size:36 final size:36
Alignment explanation
Indices: 17788089--17788291 Score: 230
Period size: 36 Copynumber: 5.6 Consensus size: 36
17788079 ACTTCGATGA
* * *
17788089 ATTGCTTATGTCTCGATTAGAGCGTAATGCTAAGAG
1 ATTGCTTATGTCTCAATTAGAGCGTAATGCTATGTG
* * * * *
17788125 ATTACTTACGTCTCAATTAGAGTGTAAAT-CTAAGAG
1 ATTGCTTATGTCTCAATTAGAGCGT-AATGCTATGTG
* *
17788161 ATTG-TGTATGTCTCGATTAGAGCATAATGCTATGTG
1 ATTGCT-TATGTCTCAATTAGAGCGTAATGCTATGTG
* ** *
17788197 ATTGCTTACGTCTCGGTTAGAGCATAATGCTATGTG
1 ATTGCTTATGTCTCAATTAGAGCGTAATGCTATGTG
*
17788233 ATTGCTTATGTCTCAATTAGAGCGTAATGATATGTG
1 ATTGCTTATGTCTCAATTAGAGCGTAATGCTATGTG
*
17788269 ATTGCTTATGTCTCAGTTAGAGC
1 ATTGCTTATGTCTCAATTAGAGC
17788292 ATAAGGTCGT
Statistics
Matches: 144, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
35 4 0.03
36 136 0.94
37 4 0.03
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (36 bp):
ATTGCTTATGTCTCAATTAGAGCGTAATGCTATGTG
Found at i:17788217 original size:72 final size:72
Alignment explanation
Indices: 17788089--17788295 Score: 265
Period size: 72 Copynumber: 2.9 Consensus size: 72
17788079 ACTTCGATGA
* * * * **
17788089 ATTGCTTATGTCTCGATTAGAGCGTAATGCTAAGAGATTACTTACGTCTCAATTAGAGTGTAAAT
1 ATTGCTTATGTCTCGATTAGAGCGTAATGCTATGTGATTGCTTACGTCTCAGTTAGAGCAT-AAT
17788154 -CTAAGAG
65 GCTAAGAG
* *
17788161 ATTG-TGTATGTCTCGATTAGAGCATAATGCTATGTGATTGCTTACGTCTCGGTTAGAGCATAAT
1 ATTGCT-TATGTCTCGATTAGAGCGTAATGCTATGTGATTGCTTACGTCTCAGTTAGAGCATAAT
* *
17788225 GCTATGTG
65 GCTAAGAG
* * *
17788233 ATTGCTTATGTCTCAATTAGAGCGTAATGATATGTGATTGCTTATGTCTCAGTTAGAGCATAA
1 ATTGCTTATGTCTCGATTAGAGCGTAATGCTATGTGATTGCTTACGTCTCAGTTAGAGCATAA
17788296 GGTCGTTTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
71 4 0.03
72 112 0.96
73 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (72 bp):
ATTGCTTATGTCTCGATTAGAGCGTAATGCTATGTGATTGCTTACGTCTCAGTTAGAGCATAATG
CTAAGAG
Found at i:17788279 original size:108 final size:108
Alignment explanation
Indices: 17788089--17788295 Score: 267
Period size: 108 Copynumber: 1.9 Consensus size: 108
17788079 ACTTCGATGA
* * *
17788089 ATTGCTTATGTCTCGATTAGAGCGTAATGCTAAGAGATTACTTACGTCTCAATTAGAGTGTAAAT
1 ATTGCTTACGTCTCGATTAGAGCATAATGCTAAGAGATTACTTACGTCTCAATTAGAGCGTAAAT
*
17788154 CTAAGAGATTGTGTATGTCTC-GATTAGAGCATAATGCTATGTG
66 ATAAGAGATTGTGTATGTCTCAG-TTAGAGCATAATGCTATGTG
* * * * *
17788197 ATTGCTTACGTCTCGGTTAGAGCATAATGCTATGTGATTGCTTATGTCTCAATTAGAGCGT-AAT
1 ATTGCTTACGTCTCGATTAGAGCATAATGCTAAGAGATTACTTACGTCTCAATTAGAGCGTAAAT
* *
17788261 GATATGTGATTGCT-TATGTCTCAGTTAGAGCATAA
66 -ATAAGAGATTG-TGTATGTCTCAGTTAGAGCATAA
17788296 GGTCGTTTCA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
107 3 0.04
108 80 0.94
109 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (108 bp):
ATTGCTTACGTCTCGATTAGAGCATAATGCTAAGAGATTACTTACGTCTCAATTAGAGCGTAAAT
ATAAGAGATTGTGTATGTCTCAGTTAGAGCATAATGCTATGTG
Found at i:17796402 original size:17 final size:17
Alignment explanation
Indices: 17796382--17796438 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 17
17796372 AATATGAAAA
17796382 GTTAAAGAAGATGGAAG
1 GTTAAAGAAGATGGAAG
*** * *
17796399 GTTAAAGGTCAAGGGAG
1 GTTAAAGAAGATGGAAG
17796416 GTTAAAGAAGATGGAAG
1 GTTAAAGAAGATGGAAG
17796433 GTTAAA
1 GTTAAA
17796439 AATTAAAGGA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.44, C:0.02, G:0.35, T:0.19
Consensus pattern (17 bp):
GTTAAAGAAGATGGAAG
Found at i:17796455 original size:34 final size:34
Alignment explanation
Indices: 17796383--17796456 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 34
17796373 ATATGAAAAG
** * *
17796383 TTAAAGAAGATGGAAGGTTAAAGGTCAAGGGAGG
1 TTAAAGAAGATGGAAGGTTAAAAATCAAAGGAGA
*
17796417 TTAAAGAAGATGGAAGGTTAAAAATTAAAGGAGA
1 TTAAAGAAGATGGAAGGTTAAAAATCAAAGGAGA
17796451 TTAAAG
1 TTAAAG
17796457 GTTGAACATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.47, C:0.01, G:0.31, T:0.20
Consensus pattern (34 bp):
TTAAAGAAGATGGAAGGTTAAAAATCAAAGGAGA
Found at i:17815643 original size:53 final size:53
Alignment explanation
Indices: 17815563--17815812 Score: 319
Period size: 53 Copynumber: 4.7 Consensus size: 53
17815553 TTGTTCCAAA
* * *
17815563 GATTAAAGGTCCGATGACTTTGTGTCATCTTGAGTTATATGAATCCTATCACG
1 GATTAAAGGTCTGATGACTTTGTGTCATCTTGAGTTATACGAATCCTATCATG
* * * *
17815616 GATTAAAGGTCTAATGACTCTGTGTCATTATTGAGTTATATGAATCCTATCATG
1 GATTAAAGGTCTGATGACTTTGTGTCA-TCTTGAGTTATACGAATCCTATCATG
* * *
17815670 GATTAAAGGT-TCGATGACTATGTGTCATCGTGAGTTATACGAATCCTATTATG
1 GATTAAAGGTCT-GATGACTTTGTGTCATCTTGAGTTATACGAATCCTATCATG
* *
17815723 GATTAAGGGT-TCGATGACTTTGTGTCAT-TGTGAGTTACACGAATCC-ATCATG
1 GATTAAAGGTCT-GATGACTTTGTGTCATCT-TGAGTTATACGAATCCTATCATG
*
17815775 GATTAAAGGTCTGATGACTTTGTGTCATCGTGAGTTAT
1 GATTAAAGGTCTGATGACTTTGTGTCATCTTGAGTTAT
17815813 CAAATACGAA
Statistics
Matches: 173, Mismatches: 19, Indels: 11
0.85 0.09 0.05
Matches are distributed among these distances:
52 37 0.21
53 89 0.51
54 47 0.27
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (53 bp):
GATTAAAGGTCTGATGACTTTGTGTCATCTTGAGTTATACGAATCCTATCATG
Found at i:17815811 original size:105 final size:107
Alignment explanation
Indices: 17815563--17815812 Score: 346
Period size: 107 Copynumber: 2.4 Consensus size: 107
17815553 TTGTTCCAAA
* * *
17815563 GATTAAAGGTCCGATGACTTTGTGTCATCTTGAGTTATATGAATCCTATCACGGATTAAAGGTCT
1 GATTAAAGGTCTGATGACTTTGTGTCATCGTGAGTTATACGAATCCTATCACGGATTAAAGGTCT
* * *
17815628 AATGACTCTGTGTCATTATTGAGTTATATGAATCCTATCATG
66 AATGACTCTGTGTCATTAGTGAGTTACACGAATCCTATCATG
* * * *
17815670 GATTAAAGGT-TCGATGACTATGTGTCATCGTGAGTTATACGAATCCTATTATGGATTAAGGGT-
1 GATTAAAGGTCT-GATGACTTTGTGTCATCGTGAGTTATACGAATCCTATCACGGATTAAAGGTC
* *
17815733 TCGATGACTTTGTGTCATT-GTGAGTTACACGAATCC-ATCATG
65 T-AATGACTCTGTGTCATTAGTGAGTTACACGAATCCTATCATG
17815775 GATTAAAGGTCTGATGACTTTGTGTCATCGTGAGTTAT
1 GATTAAAGGTCTGATGACTTTGTGTCATCGTGAGTTAT
17815813 CAAATACGAA
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
105 41 0.32
106 16 0.13
107 70 0.55
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (107 bp):
GATTAAAGGTCTGATGACTTTGTGTCATCGTGAGTTATACGAATCCTATCACGGATTAAAGGTCT
AATGACTCTGTGTCATTAGTGAGTTACACGAATCCTATCATG
Found at i:17816519 original size:21 final size:21
Alignment explanation
Indices: 17816495--17816551 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
17816485 TAGAAGTAAG
* *
17816495 ACTTATTTCGGTAGAAGAGTC
1 ACTTATATCGGTAGAACAGTC
*
17816516 ACTTATATCGGTAGAACTGTC
1 ACTTATATCGGTAGAACAGTC
*
17816537 ACTTGTATCGGTAGA
1 ACTTATATCGGTAGA
17816552 GGTCTGCACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (21 bp):
ACTTATATCGGTAGAACAGTC
Found at i:17818503 original size:45 final size:45
Alignment explanation
Indices: 17818384--17818540 Score: 145
Period size: 45 Copynumber: 3.5 Consensus size: 45
17818374 TTTTCAAACA
* **
17818384 AGTAAAACCATAGCCGAAAGACACTAGTGGAAACATGACAGAAACA
1 AGTAAGACCATAGCCGAAAGACACTA-TGGAAACATGACAGAAATG
* ** * *
17818430 AGTAAGACCATAGCCGAAAGGCGTTATGGTAACATGCCAGAAATG
1 AGTAAGACCATAGCCGAAAGACACTATGGAAACATGACAGAAATG
* * * * *
17818475 AGTAAGACCATAG-CTAGAAGACACTATGGCATCATGACGGAAGTG
1 AGTAAGACCATAGCCGA-AAGACACTATGGAAACATGACAGAAATG
* * *
17818520 AATAAGACCATGGCTGAAAGA
1 AGTAAGACCATAGCCGAAAGA
17818541 TGCAATGGCA
Statistics
Matches: 88, Mismatches: 21, Indels: 5
0.77 0.18 0.04
Matches are distributed among these distances:
44 2 0.02
45 63 0.72
46 23 0.26
ACGTcount: A:0.43, C:0.18, G:0.24, T:0.15
Consensus pattern (45 bp):
AGTAAGACCATAGCCGAAAGACACTATGGAAACATGACAGAAATG
Found at i:17831445 original size:20 final size:20
Alignment explanation
Indices: 17831420--17831458 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
17831410 ATGGAATGAA
*
17831420 GGTTTGTAGTGAAGAGATAG
1 GGTTTGTAATGAAGAGATAG
17831440 GGTTTGTAATGAAGAGATA
1 GGTTTGTAATGAAGAGATA
17831459 AGGAAGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (20 bp):
GGTTTGTAATGAAGAGATAG
Found at i:17833478 original size:19 final size:19
Alignment explanation
Indices: 17833454--17833490 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
17833444 CTCCTAGGTG
17833454 TGGAAAATTTCTAAGAATA
1 TGGAAAATTTCTAAGAATA
17833473 TGGAAAATTTCTAAGAAT
1 TGGAAAATTTCTAAGAAT
17833491 TACCTACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (19 bp):
TGGAAAATTTCTAAGAATA
Found at i:17837287 original size:12 final size:12
Alignment explanation
Indices: 17837270--17837295 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
17837260 GCTCATCCTT
17837270 TCCACCTAAATG
1 TCCACCTAAATG
17837282 TCCACCTAAATG
1 TCCACCTAAATG
17837294 TC
1 TC
17837296 ATTGTGGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.35, G:0.08, T:0.27
Consensus pattern (12 bp):
TCCACCTAAATG
Found at i:17851327 original size:20 final size:20
Alignment explanation
Indices: 17851302--17851541 Score: 266
Period size: 20 Copynumber: 11.9 Consensus size: 20
17851292 CATCTACGTA
*
17851302 TTCAGGCTTTATGCCGATGT
1 TTCAGGCTTTATGCCGGTGT
*
17851322 TTCAGGCTTTGTGCCGGTGT
1 TTCAGGCTTTATGCCGGTGT
17851342 TTCAGGCTTTATGCCGGTGT
1 TTCAGGCTTTATGCCGGTGT
*
17851362 TTCAGTCTTTATGCCGGTGT
1 TTCAGGCTTTATGCCGGTGT
* *
17851382 TTCAAGCTTTGTGCCGGTGT
1 TTCAGGCTTTATGCCGGTGT
**
17851402 TTCAGGCTTTATGCTAGTGT
1 TTCAGGCTTTATGCCGGTGT
* * *
17851422 ATCAGGCTTTGTGCCAGTGT
1 TTCAGGCTTTATGCCGGTGT
* *
17851442 ATT-AGGCTTTGTGTCGGTGT
1 -TTCAGGCTTTATGCCGGTGT
*
17851462 ATTTAGGCTTTATGCCGGTGT
1 -TTCAGGCTTTATGCCGGTGT
* *
17851483 TTCAGGCTTTGTGCCAGTGT
1 TTCAGGCTTTATGCCGGTGT
* * * *
17851503 ATCAGGCTTTGTACCAGTGT
1 TTCAGGCTTTATGCCGGTGT
* *
17851523 ATCAGGCTTTGTGCCGGTG
1 TTCAGGCTTTATGCCGGTG
17851542 ATCCATGAAC
Statistics
Matches: 192, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 176 0.92
21 16 0.08
ACGTcount: A:0.12, C:0.18, G:0.30, T:0.40
Consensus pattern (20 bp):
TTCAGGCTTTATGCCGGTGT
Found at i:17851395 original size:60 final size:60
Alignment explanation
Indices: 17851302--17851541 Score: 304
Period size: 60 Copynumber: 4.0 Consensus size: 60
17851292 CATCTACGTA
17851302 TTCAGGCTTTATGCC-GATGTTTCAGGCTTTGTGCCGGTGTTTCAGGCTTTATGCCGGTGT
1 TTCAGGCTTTATGCCAG-TGTTTCAGGCTTTGTGCCGGTGTTTCAGGCTTTATGCCGGTGT
* * * **
17851362 TTCAGTCTTTATGCCGGTGTTTCAAGCTTTGTGCCGGTGTTTCAGGCTTTATGCTAGTGT
1 TTCAGGCTTTATGCCAGTGTTTCAGGCTTTGTGCCGGTGTTTCAGGCTTTATGCCGGTGT
* * * *
17851422 ATCAGGCTTTGTGCCAGTGTATT-AGGCTTTGTGTCGGTGTATTTAGGCTTTATGCCGGTGT
1 TTCAGGCTTTATGCCAGTGT-TTCAGGCTTTGTGCCGGTGT-TTCAGGCTTTATGCCGGTGT
* * * * * *
17851483 TTCAGGCTTTGTGCCAGTGTATCAGGCTTTGTACCAGTGTATCAGGCTTTGTGCCGGTG
1 TTCAGGCTTTATGCCAGTGTTTCAGGCTTTGTGCCGGTGTTTCAGGCTTTATGCCGGTG
17851542 ATCCATGAAC
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
60 102 0.66
61 53 0.34
ACGTcount: A:0.12, C:0.18, G:0.30, T:0.40
Consensus pattern (60 bp):
TTCAGGCTTTATGCCAGTGTTTCAGGCTTTGTGCCGGTGTTTCAGGCTTTATGCCGGTGT
Found at i:17856685 original size:13 final size:13
Alignment explanation
Indices: 17856667--17856694 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17856657 GGATCAACTT
17856667 GTTCTTATTGTTG
1 GTTCTTATTGTTG
17856680 GTTCTTATTGTTG
1 GTTCTTATTGTTG
17856693 GT
1 GT
17856695 CACAATTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.25, T:0.61
Consensus pattern (13 bp):
GTTCTTATTGTTG
Found at i:17863223 original size:22 final size:21
Alignment explanation
Indices: 17863194--17863239 Score: 51
Period size: 22 Copynumber: 2.1 Consensus size: 21
17863184 GGATTTTATG
17863194 TAATTTAAGAA-GACTT-AAAAT
1 TAATTTAA-AATGA-TTAAAAAT
17863215 TAATATTAAAATGATTAAAAAT
1 TAAT-TTAAAATGATTAAAAAT
17863237 TAA
1 TAA
17863240 GATGAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (21 bp):
TAATTTAAAATGATTAAAAAT
Found at i:17872725 original size:18 final size:18
Alignment explanation
Indices: 17872702--17872739 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
17872692 CAACGTGACT
17872702 TTCGATCAACTTCGGGTA
1 TTCGATCAACTTCGGGTA
17872720 TTCGATCAACTTCGGGTA
1 TTCGATCAACTTCGGGTA
17872738 TT
1 TT
17872740 GTTGTAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (18 bp):
TTCGATCAACTTCGGGTA
Found at i:17882509 original size:13 final size:12
Alignment explanation
Indices: 17882489--17882536 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
17882479 TTAGGTTCTC
17882489 TGAGAGAAAATG
1 TGAGAGAAAATG
* *
17882501 TGCAGAGAAAGTT
1 TG-AGAGAAAATG
17882514 TGAGAAGAAAATG
1 TGAG-AGAAAATG
*
17882527 TGAAAGAAAA
1 TGAGAGAAAA
17882537 AAGAAAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 10 0.34
13 19 0.66
ACGTcount: A:0.52, C:0.02, G:0.29, T:0.17
Consensus pattern (12 bp):
TGAGAGAAAATG
Found at i:17885801 original size:31 final size:31
Alignment explanation
Indices: 17885766--17885827 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
17885756 AGTTCGTGTA
*
17885766 GAAAACTTACCCTTGGATCATTAGTGGACAC
1 GAAAACCTACCCTTGGATCATTAGTGGACAC
17885797 GAAAACCTACCCTTGGATCATTAGTGGACAC
1 GAAAACCTACCCTTGGATCATTAGTGGACAC
17885828 CTACGGTGCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (31 bp):
GAAAACCTACCCTTGGATCATTAGTGGACAC
Found at i:17898235 original size:3 final size:3
Alignment explanation
Indices: 17898227--17898297 Score: 99
Period size: 3 Copynumber: 23.7 Consensus size: 3
17898217 CTGCTCTTCC
*
17898227 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT GTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* *
17898275 CTT C-T CTTT CTC CTT CTT TTT CT
1 CTT CTT C-TT CTT CTT CTT CTT CT
17898298 CCACTTCCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.93
4 2 0.03
ACGTcount: A:0.00, C:0.32, G:0.01, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:17909800 original size:21 final size:21
Alignment explanation
Indices: 17909760--17909802 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
17909750 ATAACAAAAG
17909760 AAAAAAATAACTAAAGCCTAA
1 AAAAAAATAACTAAAGCCTAA
*
17909781 AAAAGAAATGACTAAA-CCTAA
1 AAAA-AAATAACTAAAGCCTAA
17909802 A
1 A
17909803 TTACAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.65, C:0.14, G:0.07, T:0.14
Consensus pattern (21 bp):
AAAAAAATAACTAAAGCCTAA
Found at i:17920839 original size:12 final size:12
Alignment explanation
Indices: 17920822--17920847 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
17920812 AGAACTCTAC
17920822 TTCTAATTATTA
1 TTCTAATTATTA
17920834 TTCTAATTATTA
1 TTCTAATTATTA
17920846 TT
1 TT
17920848 AAATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (12 bp):
TTCTAATTATTA
Found at i:17921093 original size:17 final size:18
Alignment explanation
Indices: 17921065--17921099 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
17921055 AGGTAACTAC
*
17921065 TTTTTATATTTTTTTTAT
1 TTTTTATATTTTTATTAT
17921083 TTTTTAT-TTTTTATTAT
1 TTTTTATATTTTTATTAT
17921100 ATCATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTATATTTTTATTAT
Found at i:17923750 original size:4 final size:5
Alignment explanation
Indices: 17923726--17923763 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
17923716 GTTTTTCTTC
*
17923726 TTTAT TTTAT TTTAT TTTA- TTTAT TTTAC TTTACT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTT
17923764 GACCTAGATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
4 4 0.14
5 22 0.76
6 3 0.10
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:17923750 original size:14 final size:15
Alignment explanation
Indices: 17923725--17923763 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
17923715 GGTTTTTCTT
17923725 CTTTATTTTATTTTA
1 CTTTATTTTATTTTA
*
17923740 TTTTA-TTTATTTTA
1 CTTTATTTTATTTTA
17923754 CTTTACTTTT
1 CTTTA-TTTT
17923764 GACCTAGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 13 0.65
15 4 0.20
16 3 0.15
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (15 bp):
CTTTATTTTATTTTA
Found at i:17923750 original size:19 final size:20
Alignment explanation
Indices: 17923726--17923763 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
17923716 GTTTTTCTTC
*
17923726 TTTATTTTATTTTA-TTTTA
1 TTTATTTTACTTTACTTTTA
17923745 TTTATTTTACTTTACTTTT
1 TTTATTTTACTTTACTTTT
17923764 GACCTAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTATTTTACTTTACTTTTA
Found at i:17931204 original size:15 final size:15
Alignment explanation
Indices: 17931184--17931221 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
17931174 TCTTGTTTGT
17931184 TATTATGATGAATAC
1 TATTATGATGAATAC
17931199 TATTATGATGAATAC
1 TATTATGATGAATAC
*
17931214 CATTATGA
1 TATTATGA
17931222 ATGCTATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (15 bp):
TATTATGATGAATAC
Found at i:17938811 original size:27 final size:27
Alignment explanation
Indices: 17938773--17938826 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
17938763 AAGGTGTCCA
17938773 TTGAATGCATATAAATAGATGGACAAT
1 TTGAATGCATATAAATAGATGGACAAT
17938800 TTGAATGCATATAAATAGATGGACAAT
1 TTGAATGCATATAAATAGATGGACAAT
17938827 GATGCTCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (27 bp):
TTGAATGCATATAAATAGATGGACAAT
Found at i:17947693 original size:31 final size:28
Alignment explanation
Indices: 17947658--17947723 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 28
17947648 ATTAGTAAAG
17947658 ATAAATTTGTACTTTAACCTCTTTT-AAAATT
1 ATAAATTTG-A-TTTAA--TCTTTTAAAAATT
17947689 ATAAAAATTTGATTTAATCTTTTAAAAATT
1 AT--AAATTTGATTTAATCTTTTAAAAATT
17947719 ATAAA
1 ATAAA
17947724 AATATAAACT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
28 3 0.09
29 6 0.19
30 8 0.25
31 7 0.22
32 1 0.03
33 7 0.22
ACGTcount: A:0.44, C:0.08, G:0.03, T:0.45
Consensus pattern (28 bp):
ATAAATTTGATTTAATCTTTTAAAAATT
Found at i:17948331 original size:18 final size:18
Alignment explanation
Indices: 17948308--17948343 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
17948298 CATAATAATA
*
17948308 TATAAAAATTAAAAAATT
1 TATAAAAATGAAAAAATT
17948326 TATAAAAATGAAAAAATT
1 TATAAAAATGAAAAAATT
17948344 ATTTAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (18 bp):
TATAAAAATGAAAAAATT
Found at i:17949323 original size:4 final size:4
Alignment explanation
Indices: 17949294--17949347 Score: 51
Period size: 4 Copynumber: 14.0 Consensus size: 4
17949284 AATTTTGTAT
* * *
17949294 TTTA TTTT TTTA TTT- TTTGT TTTA TTTA TTTA TATA TTTA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA
17949341 TTT- TTTA
1 TTTA TTTA
17949348 AATATAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
3 9 0.22
4 29 0.71
5 3 0.07
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:17949331 original size:12 final size:12
Alignment explanation
Indices: 17949316--17949352 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
17949306 TTTTTTGTTT
17949316 TATTTATTTATA
1 TATTTATTTATA
17949328 TATTTATTTAT-
1 TATTTATTTATA
*
17949339 TATTT-TTTAAA
1 TATTTATTTATA
17949350 TAT
1 TAT
17949353 AAATAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
10 4 0.17
11 8 0.35
12 11 0.48
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATTTATTTATA
Found at i:17949438 original size:14 final size:15
Alignment explanation
Indices: 17949421--17949449 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
17949411 TCCAAATACC
17949421 CAAGCCC-AATTTTA
1 CAAGCCCAAATTTTA
17949435 CAAGCCCAAATTTTA
1 CAAGCCCAAATTTTA
17949450 AAAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (15 bp):
CAAGCCCAAATTTTA
Found at i:17949790 original size:15 final size:16
Alignment explanation
Indices: 17949772--17949808 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
17949762 AGGTATTCTG
17949772 TTTATAC-ATATTTAT
1 TTTATACTATATTTAT
*
17949787 TTTATACTCTATTTAT
1 TTTATACTATATTTAT
17949803 TTTATA
1 TTTATA
17949809 TTATTTCTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATACTATATTTAT
Found at i:17962848 original size:50 final size:49
Alignment explanation
Indices: 17962788--17962931 Score: 123
Period size: 50 Copynumber: 2.9 Consensus size: 49
17962778 GTGAATGGAG
* *
17962788 TAAAGTTACGAAACCAAATCCTATATCCTTAATGTTGTAGTGGA-CCGGA
1 TAAAGCTACGAAACCAAATCCTATATCCTTAA-GTTGTAGTGGAGCAGGA
* * **
17962837 TTAAAGCTACGAAGA-CGAATCCT-TATCTCTCTAAAGTTGCAGTACAGCAGGA
1 -TAAAGCTACGAA-ACCAAATCCTATATC-CT-T-AAGTTGTAGTGGAGCAGGA
* * *
17962889 TAAAGCTACAAAACCAAATCCTATACCCCTGAAGTTGTAGTGG
1 TAAAGCTACGAAACCAAATCCTATA-TCCTTAAGTTGTAGTGG
17962932 GTTGGGTTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
49 4 0.05
50 30 0.41
51 28 0.38
52 10 0.14
53 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (49 bp):
TAAAGCTACGAAACCAAATCCTATATCCTTAAGTTGTAGTGGAGCAGGA
Found at i:17972323 original size:29 final size:30
Alignment explanation
Indices: 17972291--17972348 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 30
17972281 ATGGTTTAAC
*
17972291 GTGTAATTATATATAT-AAATTTTGATTTT
1 GTGTAATTATATATATGAAATTTTAATTTT
*
17972320 GTGTAATTTTATATATGAAATTTTAATTT
1 GTGTAATTATATATATGAAATTTTAATTT
17972349 AATTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (30 bp):
GTGTAATTATATATATGAAATTTTAATTTT
Found at i:17972361 original size:31 final size:29
Alignment explanation
Indices: 17972292--17972363 Score: 83
Period size: 30 Copynumber: 2.5 Consensus size: 29
17972282 TGGTTTAACG
* * **
17972292 TGTAATTATATATATAAATTTTGATTTTG
1 TGTAATTTTATATATAAATTTTAATTTAA
17972321 TGTAATTTTATATATGAAATTTTAATTTAA
1 TGTAATTTTATATAT-AAATTTTAATTTAA
*
17972351 TTTAATTTT-TATA
1 TGTAATTTTATATA
17972364 AATTATTAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 18 0.49
30 19 0.51
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (29 bp):
TGTAATTTTATATATAAATTTTAATTTAA
Found at i:17972510 original size:31 final size:31
Alignment explanation
Indices: 17972475--17972535 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
17972465 TTCTTTAAAT
* *
17972475 GTATATAATTAAA-TCATAATTAAAGTTTCAA
1 GTATACAATTAAACT-ACAATTAAAGTTTCAA
*
17972506 GTATACATTTAAACTACAATTAAAGTTTCA
1 GTATACAATTAAACTACAATTAAAGTTTCA
17972536 CGTGCATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38
Consensus pattern (31 bp):
GTATACAATTAAACTACAATTAAAGTTTCAA
Found at i:17972677 original size:18 final size:19
Alignment explanation
Indices: 17972649--17972686 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
17972639 TTTTAATTTT
17972649 AATTTTAATTTTTATATAA
1 AATTTTAATTTTTATATAA
17972668 AATTTT-ATTTTTATATAA
1 AATTTTAATTTTTATATAA
17972686 A
1 A
17972687 CCGACATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
AATTTTAATTTTTATATAA
Found at i:17972827 original size:24 final size:24
Alignment explanation
Indices: 17972800--17972853 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
17972790 AATTTTACTC
17972800 AAATTTGTTCATATTAT-TT-TTTTA
1 AAATTT-TT-ATATTATATTATTTTA
*
17972824 AAATATTTATATTATATTATTTTA
1 AAATTTTTATATTATATTATTTTA
*
17972848 ATATTT
1 AAATTT
17972854 AATAGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 7 0.28
23 4 0.16
24 14 0.56
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATTTTTATATTATATTATTTTA
Found at i:17973362 original size:12 final size:13
Alignment explanation
Indices: 17973335--17973360 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17973325 TCTTTAACTA
17973335 TAAAAAATAATTT
1 TAAAAAATAATTT
17973348 TAAAAAATAATTT
1 TAAAAAATAATTT
17973361 AAGTAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAAAATAATTT
Found at i:17976592 original size:16 final size:15
Alignment explanation
Indices: 17976555--17976593 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
17976545 AAATGACATG
*
17976555 AAAATAAATAACAAC
1 AAAATAAATAACAAA
*
17976570 AATATAAATAAACAAA
1 AAAATAAAT-AACAAA
17976586 AAAATAAA
1 AAAATAAA
17976594 AATTAAATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAATAAATAACAAA
Found at i:17976676 original size:99 final size:99
Alignment explanation
Indices: 17976551--17976738 Score: 253
Period size: 99 Copynumber: 1.9 Consensus size: 99
17976541 AATAAAATGA
17976551 CATGAAAATAAATAACAACAATATAAATAAAC-AAAAAAAT-AA-AAATTAAATG-CTAAAATAA
1 CATGAAAATAAATAACAACAATATAAATAAACAAAAAAAATCAATAAATTAAATGTC-AAAATAA
17976612 ACAAACAAATATAAACAATAAAAATAATTGAGATTAGG
65 AC-AACAAA-ATAAA-AATAAAAATAATTGAGATTAGG
*
17976650 CATGAAAATAAATGAC-A-AATGAATAAATAAACAAAAAAAATCAATAAATTAAATGTCAAAATA
1 CATGAAAATAAATAACAACAAT--ATAAATAAACAAAAAAAATCAATAAATTAAATGTCAAAATA
**
17976713 AACAATTAAATAAAAATAAAAATAAT
64 AACAACAAAATAAAAATAAAAATAAT
17976739 AAAGAAGACG
Statistics
Matches: 80, Mismatches: 3, Indels: 12
0.84 0.03 0.13
Matches are distributed among these distances:
97 3 0.04
98 1 0.01
99 37 0.46
100 13 0.16
101 6 0.08
102 19 0.24
103 1 0.01
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.21
Consensus pattern (99 bp):
CATGAAAATAAATAACAACAATATAAATAAACAAAAAAAATCAATAAATTAAATGTCAAAATAAA
CAACAAAATAAAAATAAAAATAATTGAGATTAGG
Found at i:17977723 original size:98 final size:98
Alignment explanation
Indices: 17977546--17978108 Score: 426
Period size: 98 Copynumber: 5.7 Consensus size: 98
17977536 TTCTTTTCAA
* * * * * *
17977546 AAGGTGTAAGATTCGCCGTTGCGGCTTCATTCTATTCCCTCTTTGGTTTTAAGGTGTTAGGTCCA
1 AAGGTGTAAGATTCGCCATTGCGACTTCAATCT-TTCCCTCTTTGATTTTAAGGTGTTAGGTTCG
* *
17977611 TC-TCT-C-GCTTTCAACCTATCCCTCTTCAATTTT
65 CCGT-TGCGGC-TTCAACCTATCCCTCTTCGATTTT
* * * *
17977644 AAGGTGTAAGATTCGTCATTGCGATTTTAATCTTTCCCTCTTTGATTTTAAGGTGCTAGGTTCGC
1 AAGGTGTAAGATTCGCCATTGCGACTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTTCGC
* ** * *
17977709 CATTATGGCTTCAACCTATCCCTATTTGATTTT
66 CGTTGCGGCTTCAACCTATCCCTCTTCGATTTT
* * * * ** *
17977742 AGGGTGTTAAG--TCTGCCATTGTGACTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGGTTC
1 AAGGTG-TAAGATTC-GCCATTGCGACTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTTC
* * * * * * *
17977805 GTCGTTGCGGCTTTAACCTTTCTCTTTTTGTTTTT
64 GCCGTTGCGGCTTCAACCTATCCCTCTTCGATTTT
* * * * * *
17977840 AGGGTGTTAA-A-TCTGCCGTTGCAACTTCAATCTATCCCTC-TTCAGTTTTAAGGTGTTAGGTC
1 AAGGTG-TAAGATTC-GCCATTGCGACTTCAATCTTTCCCTCTTTGA-TTTTAAGGTGTTAGGTT
* **
17977902 CGTCGTTGCGATTTCAACCTATCCCTCTTCGATTTT
63 CGCCGTTGCGGCTTCAACCTATCCCTCTTCGATTTT
* * * **
17977938 AAGGTGTAAGATCCGTCATTGTGACTTCAATCTTTCCCT-TTTCGATTTTTTGGATGTTAGGTTC
1 AAGGTGTAAGATTCGCCATTGCGACTTCAATCTTTCCCTCTTT-GATTTTAAGG-TGTTAGGTTC
* * *
17978002 ACCGTTGCGACTTCAACCTATCTCTCTTC-AGTTTT
64 GCCGTTGCGGCTTCAACCTATCCCTCTTCGA-TTTT
* * * * ** * * * * *
17978037 ACGGTGTAAGGTCCACTGTTGCGGCTTCAACCTTTCCCTCTTCGATTTTAAGATGTTAGGTCCGC
1 AAGGTGTAAGATTCGCCATTGCGACTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTTCGC
17978102 CGTTGCG
66 CGTTGCG
17978109 AATTTAGCCT
Statistics
Matches: 370, Mismatches: 81, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
97 36 0.10
98 249 0.67
99 83 0.22
100 2 0.01
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.41
Consensus pattern (98 bp):
AAGGTGTAAGATTCGCCATTGCGACTTCAATCTTTCCCTCTTTGATTTTAAGGTGTTAGGTTCGC
CGTTGCGGCTTCAACCTATCCCTCTTCGATTTT
Found at i:17977813 original size:147 final size:146
Alignment explanation
Indices: 17977620--17978088 Score: 415
Period size: 147 Copynumber: 3.2 Consensus size: 146
17977610 ATCTCTCGCT
*
17977620 TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGTCATTGCGATTTTAATCTTTCCCTCT
1 TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGTCATTGCGACTTTAATCTTTCCCT-T
** *** * * *
17977685 TTGATTTTAAGGTGCTAGGT-TCGCCATTATGGCTTCAACCTATCCCTATT-TGATTTTAGGGTG
65 TTGATTTTAAGGTGCTAAATCT-GCCATTACAACTTCAACCTATCCCTCTTCAG-TTTTAAGGTG
* *
17977748 TTAAGTCTGCCATTGTGAC
128 TTAAGTCCGCCATTGCGAC
* * * * *
17977767 TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGGTTCGTCGTTGCGGCTTTAACCTTTCTCTTT
1 TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGTCATTGCGACTTTAATCTTTC-CCTT
* * * * * *
17977832 TTGTTTTTAGGGTGTTAAATCTGCCGTTGCAACTTCAATCTATCCCTCTTCAGTTTTAAGGTGTT
65 TTGATTTTAAGGTGCTAAATCTGCCATTACAACTTCAACCTATCCCTCTTCAGTTTTAAGGTGTT
* * * *
17977897 AGGTCCGTCGTTGCGAT
130 AAGTCCGCCATTGCGAC
* * * *
17977914 TTCAACCTATCCCTCTTCGATTTTAAGGTGTAAGATCCGTCATTGTGACTTCAATCTTTCCCTTT
1 TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGTCATTGCGACTTTAATCTTTCCCTTT
** * ** * * * * * *
17977979 TCGATTTTTTGGATGTTAGGT-TCACCGTTGCGACTTCAACCTATCTCTCTTCAGTTTTACGGTG
66 T-GATTTTAAGG-TGCTAAATCT-GCCATTACAACTTCAACCTATCCCTCTTCAGTTTTAAGGTG
* ** *
17978043 -TAAGGTCCACTGTTGCGGC
128 TTAA-GTCCGCCATTGCGAC
* *
17978062 TTCAACCTTTCCCTCTTCGATTTTAAG
1 TTCAACCTATCCCTCTTCAATTTTAAG
17978089 ATGTTAGGTC
Statistics
Matches: 263, Mismatches: 52, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
146 5 0.02
147 176 0.67
148 82 0.31
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.41
Consensus pattern (146 bp):
TTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGTCATTGCGACTTTAATCTTTCCCTTT
TGATTTTAAGGTGCTAAATCTGCCATTACAACTTCAACCTATCCCTCTTCAGTTTTAAGGTGTTA
AGTCCGCCATTGCGAC
Found at i:17978098 original size:49 final size:48
Alignment explanation
Indices: 17977563--17978109 Score: 286
Period size: 49 Copynumber: 11.1 Consensus size: 48
17977553 AAGATTCGCC
* ** * * *
17977563 GTTGCGGCTTCATTCTATTCCCTCTTTGGTTTTAAGGTGTTAGGTCCAT
1 GTTGCGACTTCAACCTA-TCCCTCTTCGATTTTAAGGTGTTAGGTCCCT
* * * * * *
17977612 CTCT-CG-CTTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGATTCGT
1 GT-TGCGAC-TTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCCT
* * * * * * *
17977660 CATTGCGATTTTAATCTTTCCCTCTTTGATTTTAAGGTGCTAGGTTCGCCAT
1 -GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGG-TC-CC-T
* * * *
17977712 -TATG-G-CTTCAACCTATCCCTATTTGATTTTAGGGTGTTAAGTCTGCC-
1 GT-TGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTC--CCT
* * * * * *
17977759 ATTGTGACTTCAACCTATCCCTCTTCAATTTTAAGGTGTAAGGTTCGT
1 GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCCT
* * * * * * * * **
17977807 CGTTGCGGCTTTAACCTTTCTCTTTTTGTTTTTAGGGTGTTAAATCTGCC-
1 -GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTC--CCT
* * *
17977857 GTTGCAACTTCAATCTATCCCTCTTC-AGTTTTAAGGTGTTAGGTCCGT
1 GTTGCGACTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCCCT
* * * *
17977905 CGTTGCGATTTCAACCTATCCCTCTTCGATTTTAAGGTGTAAGATCCGT
1 -GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCCT
* * * * * **
17977954 CATTGTGACTTCAATCTTTCCCTTTTCGATTTTTTGGATGTTAGGTTCACC-
1 -GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGG-TGTTAGG-TC-CCT
* * *
17978005 GTTGCGACTTCAACCTATCTCTCTTC-AGTTTTACGGTGTAAGGTCCACT
1 GTTGCGACTTCAACCTATCCCTCTTCGA-TTTTAAGGTGTTAGGTCC-CT
* * * *
17978054 GTTGCGGCTTCAACCTTTCCCTCTTCGATTTTAAGATGTTAGGTCCGCC
1 GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCC-CT
17978103 GTTGCGA
1 GTTGCGA
17978110 ATTTAGCCTA
Statistics
Matches: 369, Mismatches: 101, Indels: 56
0.70 0.19 0.11
Matches are distributed among these distances:
47 5 0.01
48 33 0.09
49 286 0.78
50 37 0.10
51 6 0.02
52 2 0.01
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.41
Consensus pattern (48 bp):
GTTGCGACTTCAACCTATCCCTCTTCGATTTTAAGGTGTTAGGTCCCT
Found at i:17979184 original size:16 final size:15
Alignment explanation
Indices: 17979162--17979232 Score: 65
Period size: 16 Copynumber: 4.5 Consensus size: 15
17979152 TTGACCCCTC
17979162 CTTTTT-TTTTTCTT
1 CTTTTTCTTTTTCTT
*
17979176 CTATTTT-TTTCTTTTT
1 CT-TTTTCTTT-TTCTT
17979192 CCTTTTTCCTTTTTCTCT
1 -CTTTTT-CTTTTTCT-T
17979210 CTTTTTCTTTTTCTT
1 CTTTTTCTTTTTCTT
*
17979225 TTTTTTCT
1 CTTTTTCT
17979233 AGTTTGAGCT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
14 2 0.04
15 15 0.31
16 16 0.33
17 11 0.23
18 4 0.08
ACGTcount: A:0.01, C:0.20, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTTTCTTTTTCTT
Found at i:17979190 original size:6 final size:6
Alignment explanation
Indices: 17979162--17979227 Score: 59
Period size: 6 Copynumber: 11.0 Consensus size: 6
17979152 TTGACCCCTC
*
17979162 CTTTTT -TTTTT CTTCTATT -TTTTT CTTTTT CCTTTTT CCTTTTT C--TCT
1 CTTTTT CTTTTT CTT-T-TT CTTTTT CTTTTT -CTTTTT -CTTTTT CTTTTT
17979210 CTTTTT CTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT
17979228 TTTCTAGTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
4 3 0.06
5 7 0.14
6 23 0.45
7 16 0.31
8 2 0.04
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (6 bp):
CTTTTT
Found at i:17979190 original size:23 final size:21
Alignment explanation
Indices: 17979164--17979232 Score: 66
Period size: 24 Copynumber: 3.0 Consensus size: 21
17979154 GACCCCTCCT
17979164 TTTTTTTTTCTTCTATTTTTTTC
1 TTTTTTTTT-TTCT-TTTTTTTC
* *
17979187 TTTTTCCTTTTTCCTTTTTCTCTC
1 TTTTT--TTTTTTCTTTTT-TTTC
*
17979211 TTTTTCTTTTTCTTTTTTTTC
1 TTTTTTTTTTTCTTTTTTTTC
17979232 T
1 T
17979233 AGTTTGAGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
21 4 0.11
22 10 0.26
23 9 0.24
24 11 0.29
25 4 0.11
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTTTTTTCTTTTTTTTC
Found at i:17979196 original size:7 final size:7
Alignment explanation
Indices: 17979180--17979227 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
17979170 TTTCTTCTAT
*
17979180 TTTTTTC
1 TTTTTCC
17979187 TTTTTCC
1 TTTTTCC
17979194 TTTTTCC
1 TTTTTCC
17979201 TTTTTCTC
1 TTTTTC-C
*
17979209 TCTTTTTC
1 T-TTTTCC
17979217 TTTTT-C
1 TTTTTCC
17979223 TTTTT
1 TTTTT
17979228 TTTCTAGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.16
7 23 0.62
8 4 0.11
9 4 0.11
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCC
Found at i:17979317 original size:44 final size:43
Alignment explanation
Indices: 17979225--17979321 Score: 108
Period size: 43 Copynumber: 2.2 Consensus size: 43
17979215 TCTTTTTCTT
* *
17979225 TTTTTTCTAGTTTGAGCTGCCTTTTCAAGTTTTCAACTCGAACT
1 TTTTTT-TAGTTTGAGCTGCCTTTTCAAGTTTTCAACTCAAACC
* *
17979269 TTTTTTTAGTTTGAG-TCGTCCTTTT-AGGTTTTCAACTTAAACCC
1 TTTTTTTAGTTTGAGCT-G-CCTTTTCAAGTTTTCAACTCAAA-CC
17979313 TTTTTTTAG
1 TTTTTTTAG
17979322 ACGAAGCATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
43 23 0.50
44 22 0.48
ACGTcount: A:0.18, C:0.18, G:0.13, T:0.52
Consensus pattern (43 bp):
TTTTTTTAGTTTGAGCTGCCTTTTCAAGTTTTCAACTCAAACC
Found at i:17987222 original size:15 final size:15
Alignment explanation
Indices: 17987184--17987226 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
17987174 TAAAAGAGAT
17987184 AACAATA-AAATAAC
1 AACAATATAAATAAC
** *
17987198 ATGAAAATAAATAAC
1 AACAATATAAATAAC
17987213 AACAATATAAATAA
1 AACAATATAAATAA
17987227 GCAAAAGAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.70, C:0.09, G:0.02, T:0.19
Consensus pattern (15 bp):
AACAATATAAATAAC
Found at i:17987279 original size:19 final size:19
Alignment explanation
Indices: 17987216--17987279 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
17987206 AAATAACAAC
* *
17987216 AATAT-AAATAAGCAAAAGA
1 AATATAAAATAAAC-AAACA
**
17987235 AATA-AAAATAAA-AATTA
1 AATATAAAATAAACAAACA
17987252 AATACTAAAATAAACAAACA
1 AATA-TAAAATAAACAAACA
17987272 AATATAAA
1 AATATAAA
17987280 CAATAAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
17 7 0.19
19 22 0.61
20 7 0.19
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (19 bp):
AATATAAAATAAACAAACA
Found at i:17987324 original size:4 final size:4
Alignment explanation
Indices: 17987308--17987354 Score: 53
Period size: 4 Copynumber: 12.0 Consensus size: 4
17987298 TTAGGCATGA
* *
17987308 AAAT AAAT -GAT AAAT AAAT AAAT AAAT AAA- AAAT CAAT AAATT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAAT
17987355 GTCAGAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
3 5 0.14
4 27 0.75
5 4 0.11
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:17987341 original size:15 final size:15
Alignment explanation
Indices: 17987307--17987349 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
17987297 ATTAGGCATG
*
17987307 AAAATAAAT-GATAA
1 AAAATAAATAAATAA
17987321 ATAAATAAATAAATAA
1 A-AAATAAATAAATAA
*
17987337 AAAATCAATAAAT
1 AAAATAAATAAAT
17987350 TAAATGTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 19 0.76
16 5 0.20
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (15 bp):
AAAATAAATAAATAA
Found at i:17991627 original size:30 final size:30
Alignment explanation
Indices: 17991580--17991724 Score: 148
Period size: 30 Copynumber: 4.9 Consensus size: 30
17991570 GGCGTCCAAT
* *
17991580 ACAAAGGC-TCTCATATAACATATTCCTCC
1 ACAAAGGCGTCACATATAACAGATTCCTCC
* **
17991609 ACAAAGGCGTCACATATAACAAATTCAACC
1 ACAAAGGCGTCACATATAACAGATTCCTCC
* * * *
17991639 ACAAAGGCTTAACATATAATAGATTCTTCC
1 ACAAAGGCGTCACATATAACAGATTCCTCC
* * * *
17991669 ACAAAGGCTTAACATATAACGGATTCCGCC
1 ACAAAGGCGTCACATATAACAGATTCCTCC
* *
17991699 ACAAGGGCGTCACTTATAACAGATTC
1 ACAAAGGCGTCACATATAACAGATTC
17991725 AACCATAAAG
Statistics
Matches: 96, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
29 8 0.08
30 88 0.92
ACGTcount: A:0.39, C:0.26, G:0.12, T:0.23
Consensus pattern (30 bp):
ACAAAGGCGTCACATATAACAGATTCCTCC
Found at i:17991701 original size:60 final size:60
Alignment explanation
Indices: 17991591--17991764 Score: 163
Period size: 60 Copynumber: 2.9 Consensus size: 60
17991581 CAAAGGCTCT
* * * * *
17991591 CATATAACATATTCCTCCACAAAGGCGTCACATATAACAAATTCAACCACAAAGGCTTAA
1 CATATAACAGATTCATCCACAAAGGCTTAACATATAACAAATTCAACCACAAAGGCGTAA
* * ** ** * *
17991651 CATATAATAGATTCTTCCACAAAGGCTTAACATATAACGGATTCCGCCACAAGGGCGTCA
1 CATATAACAGATTCATCCACAAAGGCTTAACATATAACAAATTCAACCACAAAGGCGTAA
* * * * *
17991711 CTTATAACAGATTCAACCATAAAGGCTT-TCATATATCAAAATT-AACCACAAAGG
1 CATATAACAGATTCATCCACAAAGGCTTAACATATAAC-AAATTCAACCACAAAGG
17991765 TTTCATATCG
Statistics
Matches: 89, Mismatches: 24, Indels: 3
0.77 0.21 0.03
Matches are distributed among these distances:
59 15 0.17
60 74 0.83
ACGTcount: A:0.41, C:0.24, G:0.11, T:0.24
Consensus pattern (60 bp):
CATATAACAGATTCATCCACAAAGGCTTAACATATAACAAATTCAACCACAAAGGCGTAA
Found at i:17994044 original size:18 final size:18
Alignment explanation
Indices: 17994008--17994046 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
17993998 CATTTCTCAA
*
17994008 TTATTTTCAAACCTTATT
1 TTATTTTCAAACATTATT
17994026 TTATTTTCAAA-ATTCATT
1 TTATTTTCAAACATT-ATT
17994044 TTA
1 TTA
17994047 ACCAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 2 0.11
18 17 0.89
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (18 bp):
TTATTTTCAAACATTATT
Found at i:18003092 original size:14 final size:15
Alignment explanation
Indices: 18003073--18003112 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
18003063 ATAAACATAC
18003073 ATATTTAATTATTT-
1 ATATTTAATTATTTA
*
18003087 ATATTTTATTATTTA
1 ATATTTAATTATTTA
18003102 ATATTTCAATT
1 ATATTT-AATT
18003113 TTATTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 13 0.59
15 6 0.27
16 3 0.14
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
ATATTTAATTATTTA
Found at i:18003116 original size:21 final size:22
Alignment explanation
Indices: 18003074--18003117 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
18003064 TAAACATACA
18003074 TATTTAATTATTTATATTTTAT
1 TATTTAATTATTTATATTTTAT
18003096 TATTTAA-TATTTCA-ATTTTAT
1 TATTTAATTATTT-ATATTTTAT
18003117 T
1 T
18003118 TTAATAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTTAATTATTTATATTTTAT
Found at i:18005598 original size:21 final size:21
Alignment explanation
Indices: 18005560--18005599 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
18005550 GCTAAGCTGT
* **
18005560 TTTAGGGTTTTAGTTTAGTAG
1 TTTAGGATTTTAAATTAGTAG
18005581 TTTAGGATTTTAAATTAGT
1 TTTAGGATTTTAAATTAGT
18005600 TTTATTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.53
Consensus pattern (21 bp):
TTTAGGATTTTAAATTAGTAG
Found at i:18022307 original size:50 final size:50
Alignment explanation
Indices: 18022203--18022321 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 50
18022193 CTAAAGTTGT
* * * *
18022203 AGAGGAGCAGATTGAAGCCGCAAGGGCGAATCTCATACACCTATAGCTGT
1 AGAGGGGCAGATTGAAGCTGCAAGAGCGAATCTCATACACCTATAGCTGA
**
18022253 AGAGGGGCAGATTGAAGCTGCAAGAGCGAATCTTTTAC-CCT-TGCAGCTGA
1 AGAGGGGCAGATTGAAGCTGCAAGAGCGAATCTCATACACCTAT--AGCTGA
**
18022303 AGAGGGGTGGATTGAAGCT
1 AGAGGGGCAGATTGAAGCT
18022322 ACAAAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 3 0.05
50 55 0.93
ACGTcount: A:0.29, C:0.18, G:0.32, T:0.20
Consensus pattern (50 bp):
AGAGGGGCAGATTGAAGCTGCAAGAGCGAATCTCATACACCTATAGCTGA
Found at i:18024106 original size:21 final size:22
Alignment explanation
Indices: 18024082--18024125 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
18024072 TATTTTATGA
18024082 TATTTAATTGTAT-TGATATTT
1 TATTTAATTGTATGTGATATTT
* *
18024103 TATTTATTTGTATGTTATATTT
1 TATTTAATTGTATGTGATATTT
18024125 T
1 T
18024126 GCCTTGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (22 bp):
TATTTAATTGTATGTGATATTT
Found at i:18025478 original size:24 final size:25
Alignment explanation
Indices: 18025450--18025516 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
18025440 CTCATTTACG
* *
18025450 TGTGGCCAAGCCACTT-GATAGCAT
1 TGTGGTCAAGCCACTTCAATAGCAT
*
18025474 TGTGGTCAAGCCA-TTCAATAGCGT
1 TGTGGTCAAGCCACTTCAATAGCAT
*
18025498 TATGGTCAAGCCAC-TCAAT
1 TGTGGTCAAGCCACTTCAAT
18025517 TTTGCAGTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 2 0.05
24 35 0.95
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
TGTGGTCAAGCCACTTCAATAGCAT
Found at i:18026175 original size:58 final size:59
Alignment explanation
Indices: 18026113--18026261 Score: 205
Period size: 58 Copynumber: 2.5 Consensus size: 59
18026103 TTTTAATAAG
* *
18026113 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATTATA-TTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTTAACATA
* * * *
18026171 ATTATTATTAAGTACAATTTAAT-AAAATAATATATAATTTAATAACATTTTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTTAACATA
18026229 ATTATTATTAAAATATGAA-TTAATAAAAATAAT
1 ATTATTATT-AAATAT-AATTTAATAAAAATAAT
18026262 TATATATATT
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
57 21 0.27
58 39 0.49
59 9 0.11
60 10 0.13
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTATTATTAAATATAATTTAATAAAAATAATAAATAATTTAATAACATTTTTAACATA
Found at i:18032126 original size:24 final size:23
Alignment explanation
Indices: 18032098--18032162 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
18032088 CAAACTAATA
*
18032098 AGAGTTTGACTTAAAGAAATAAAT
1 AGAGTTT-ACTTAAAGAAATAAAC
* *
18032122 AGAGTTTAATTGAAACAAATAAAC
1 AGAGTTTACTT-AAAGAAATAAAC
*
18032146 AGAGTTTAACTGAAAGA
1 AGAGTTT-ACTTAAAGA
18032163 TTATTTCTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 3 0.09
24 28 0.85
25 2 0.06
ACGTcount: A:0.51, C:0.06, G:0.17, T:0.26
Consensus pattern (23 bp):
AGAGTTTACTTAAAGAAATAAAC
Found at i:18039803 original size:19 final size:19
Alignment explanation
Indices: 18039779--18039819 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
18039769 AATTCTTTTA
*
18039779 TTAATATATTATATTAAT-T
1 TTAATATA-TATAATAATCT
18039798 TTAATATATATAATAATCT
1 TTAATATATATAATAATCT
18039817 TTA
1 TTA
18039820 TTTAATCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATATATATAATAATCT
Found at i:18042980 original size:2 final size:2
Alignment explanation
Indices: 18042973--18043030 Score: 116
Period size: 2 Copynumber: 29.0 Consensus size: 2
18042963 TTTTAATTTA
18042973 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18043015 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
18043031 CAATGATAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 56 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18044458 original size:9 final size:10
Alignment explanation
Indices: 18044435--18044459 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
18044425 TGTAAAGTAT
18044435 TTTTTGGTAA
1 TTTTTGGTAA
18044445 TTTTTGGTAA
1 TTTTTGGTAA
18044455 TTTTT
1 TTTTT
18044460 ATGTTAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (10 bp):
TTTTTGGTAA
Found at i:18044481 original size:16 final size:16
Alignment explanation
Indices: 18044460--18044491 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18044450 GGTAATTTTT
*
18044460 ATGTTAAAGGATTAAA
1 ATGTTAAAGGAATAAA
18044476 ATGTTAAAGGAATAAA
1 ATGTTAAAGGAATAAA
18044492 TTTATGAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (16 bp):
ATGTTAAAGGAATAAA
Found at i:18044990 original size:23 final size:24
Alignment explanation
Indices: 18044948--18045048 Score: 98
Period size: 24 Copynumber: 4.2 Consensus size: 24
18044938 CTAATTTCTG
**
18044948 GCTCGTAAGAAATAACCATTCTAA
1 GCTCGTAAGAGCTAACCATTCTAA
* ***
18044972 GCTCGTTAGAGCTAA-CATTCCGG
1 GCTCGTAAGAGCTAACCATTCTAA
* **
18044995 GCTCGTAAGAGATAACCATT-TCGG
1 GCTCGTAAGAGCTAACCATTCT-AA
18045019 GCTCGTAAGAGCTAACCATTCTAA
1 GCTCGTAAGAGCTAACCATTCTAA
18045043 GCTCGT
1 GCTCGT
18045049 GAGTACTACT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
23 18 0.29
24 43 0.69
25 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
GCTCGTAAGAGCTAACCATTCTAA
Found at i:18045023 original size:47 final size:48
Alignment explanation
Indices: 18044947--18045039 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 48
18044937 TCTAATTTCT
*
18044947 GGCTCGTAAGAAATAACCATTCTAAGCTCGTTAGAGCTAA-CATTCCG
1 GGCTCGTAAGAAATAACCATTCTAAGCTCGTAAGAGCTAACCATTCCG
* **
18044994 GGCTCGTAAGAGATAACCATT-TCGGGCTCGTAAGAGCTAACCATTC
1 GGCTCGTAAGAAATAACCATTCT-AAGCTCGTAAGAGCTAACCATTC
18045040 TAAGCTCGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.03
47 34 0.85
48 5 0.12
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.25
Consensus pattern (48 bp):
GGCTCGTAAGAAATAACCATTCTAAGCTCGTAAGAGCTAACCATTCCG
Found at i:18056905 original size:20 final size:20
Alignment explanation
Indices: 18056869--18056913 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
18056859 TTATTAAGCT
*
18056869 TTAATTAATCTCTTTTAATC
1 TTAATTAATCTCATTTAATC
*
18056889 TTAATTAAGTCT-ATTTACTC
1 TTAATTAA-TCTCATTTAATC
18056909 TTAAT
1 TTAAT
18056914 AAAAATCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.31, C:0.13, G:0.02, T:0.53
Consensus pattern (20 bp):
TTAATTAATCTCATTTAATC
Found at i:18058389 original size:17 final size:17
Alignment explanation
Indices: 18058367--18058406 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
18058357 ATGTGTCCTA
18058367 TAAAAATATAAATATTT
1 TAAAAATATAAATATTT
***
18058384 TAAAAATATTTTTATTT
1 TAAAAATATAAATATTT
18058401 TAAAAA
1 TAAAAA
18058407 ATGACAAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAAAATATAAATATTT
Found at i:18060944 original size:19 final size:18
Alignment explanation
Indices: 18060922--18060992 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 18
18060912 ACGAAAAGCG
18060922 AGAAGAA-AAATATAGAATT
1 AGAAGAATAAA-ATA-AATT
18060941 AGAAGGAATAAAATAAATT
1 AGAA-GAATAAAATAAATT
* *
18060960 -GAAGAATGAAA-AAATG
1 AGAAGAATAAAATAAATT
*
18060976 GGATA-AATAAAATAAAT
1 AGA-AGAATAAAATAAAT
18060993 CAAATAAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 4 0.09
17 15 0.34
18 8 0.18
19 8 0.18
20 6 0.14
21 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (18 bp):
AGAAGAATAAAATAAATT
Found at i:18067603 original size:29 final size:29
Alignment explanation
Indices: 18067571--18067628 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
18067561 GAGTATGCCT
* *
18067571 CGCATTTCAGATGATGTGATCATAAACAA
1 CGCATTTCAAATGATGTGATCACAAACAA
18067600 CGCATTTCAAATGATGTGATCACAAACAA
1 CGCATTTCAAATGATGTGATCACAAACAA
18067629 GATAAAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCATTTCAAATGATGTGATCACAAACAA
Found at i:18068355 original size:59 final size:59
Alignment explanation
Indices: 18068239--18068355 Score: 148
Period size: 59 Copynumber: 2.0 Consensus size: 59
18068229 CATTGTTGTT
* * *
18068239 TCTCTCTTTTATATAATATACATATCATATTACATATAAATAACTTTAAATTCTAAGTAG
1 TCTCTCTTTCATATAATATACATA-CATATTACATATAAATAACTTTAAACTATAAGTAG
* *
18068299 TCTCTCTTTCATATAATATAACATA-ATATTATATATAAAT-ATTTCTAAACTATAAGT
1 TCTCTCTTTCATATAATAT-ACATACATATTACATATAAATAACTT-TAAACTATAAGT
18068356 CCTCGTGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 3 0.06
59 24 0.48
60 18 0.36
61 5 0.10
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.44
Consensus pattern (59 bp):
TCTCTCTTTCATATAATATACATACATATTACATATAAATAACTTTAAACTATAAGTAG
Found at i:18069310 original size:21 final size:21
Alignment explanation
Indices: 18069268--18069310 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
18069258 AATTCTTTTT
* ** *
18069268 AAAAATTTAAAAATTTATAAA
1 AAAAACTTAAAAACATAGAAA
18069289 AAAAACTTAAAAACATAGAAA
1 AAAAACTTAAAAACATAGAAA
18069310 A
1 A
18069311 TTTTTAAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAACTTAAAAACATAGAAA
Found at i:18070844 original size:2 final size:2
Alignment explanation
Indices: 18070769--18070834 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
18070759 ACACACATTA
18070769 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18070811 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
18070835 TGAAATATAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18071444 original size:26 final size:26
Alignment explanation
Indices: 18071392--18071444 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18071382 ACATTGATAT
* *
18071392 TTTAGGTATCAAATTGGGATAAAAAA
1 TTTAGGTATCAAAGTGAGATAAAAAA
18071418 TTTAGGTATCAAAGTGAGA-AAATAAA
1 TTTAGGTATCAAAGTGAGATAAA-AAA
18071444 T
1 T
18071445 ATATTTCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (26 bp):
TTTAGGTATCAAAGTGAGATAAAAAA
Found at i:18074667 original size:29 final size:29
Alignment explanation
Indices: 18074551--18074671 Score: 111
Period size: 29 Copynumber: 4.1 Consensus size: 29
18074541 ATGGAAATTT
* *
18074551 GGGGTCAAAAATGGAATTTTTGAAAG-TTC
1 GGGGT-AAAAATGGAATTTTTAAAAGTTTA
* **
18074580 GAGGGTGAAAATGGAATTTTTGGAAGTTTCAA
1 G-GGGTAAAAATGGAATTTTTAAAAGTTT--A
* * *
18074612 AGGTTAAAATTGGAA-TTTTAAAAGTTTA
1 GGGGTAAAAATGGAATTTTTAAAAGTTTA
*
18074640 GGGGTAAAAATGTAATTTTTAAAAGTTTA
1 GGGGTAAAAATGGAATTTTTAAAAGTTTA
18074669 GGG
1 GGG
18074672 ACTTCCAGGG
Statistics
Matches: 74, Mismatches: 13, Indels: 10
0.76 0.13 0.10
Matches are distributed among these distances:
28 12 0.16
29 35 0.47
30 16 0.22
31 11 0.15
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.34
Consensus pattern (29 bp):
GGGGTAAAAATGGAATTTTTAAAAGTTTA
Found at i:18076620 original size:6 final size:6
Alignment explanation
Indices: 18076611--18076665 Score: 57
Period size: 6 Copynumber: 10.0 Consensus size: 6
18076601 TTAAAACCAT
**
18076611 TTTAAA TTT-AA -TTAAA TTTAAA TTTAAA -ACAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
18076656 --TAAA TTTAAA
1 TTTAAA TTTAAA
18076666 ATCAATTCAA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
4 6 0.15
5 7 0.17
6 27 0.68
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (6 bp):
TTTAAA
Found at i:18076620 original size:17 final size:15
Alignment explanation
Indices: 18076595--18076665 Score: 54
Period size: 17 Copynumber: 4.3 Consensus size: 15
18076585 AAATTTAATC
*
18076595 TTAAGTTTAAAACCATT
1 TTAAATTTAAAA-CA-T
18076612 TTAAATTTAATTAA-AT
1 TTAAATTTAA--AACAT
18076628 TTAAATTTAAAACAAAT
1 TTAAATTTAAAAC--AT
*
18076645 TTAAATTTAAATAAAT
1 TTAAATTTAAA-ACAT
18076661 TTAAA
1 TTAAA
18076666 ATCAATTCAA
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
14 2 0.04
16 18 0.39
17 23 0.50
18 1 0.02
19 2 0.04
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.42
Consensus pattern (15 bp):
TTAAATTTAAAACAT
Done.