Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 83 of 163
Found at i:22918881 original size:16 final size:17
Alignment explanation
Indices: 22918860--22918893 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
22918850 TAACCCAACT
22918860 AGCCCAAATTT-AACAA
1 AGCCCAAATTTAAACAA
22918876 AGCCCAAATTTAAACAA
1 AGCCCAAATTTAAACAA
22918893 A
1 A
22918894 ACAAAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.53, C:0.24, G:0.06, T:0.18
Consensus pattern (17 bp):
AGCCCAAATTTAAACAA
Found at i:22919797 original size:30 final size:30
Alignment explanation
Indices: 22919745--22919834 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
22919735 TTATGTTTTG
*
22919745 ACCCCTAAATTTTCCAAAAAATTCAAATTTA
1 ACCCCTAAATTTTTC-AAAAATTCAAATTTA
22919776 ACCCCTAAATTTTTCAAAAATTCAAATTTA
1 ACCCCTAAATTTTTCAAAAATTCAAATTTA
*
22919806 ACCCCTAAAATTTGT-AAAAATTCAAATTT
1 ACCCCT-AAATTTTTCAAAAATTCAAATTT
22919835 GAAATTTGAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
30 35 0.62
31 21 0.38
ACGTcount: A:0.44, C:0.20, G:0.01, T:0.34
Consensus pattern (30 bp):
ACCCCTAAATTTTTCAAAAATTCAAATTTA
Found at i:22919853 original size:73 final size:73
Alignment explanation
Indices: 22919770--22919907 Score: 188
Period size: 73 Copynumber: 1.9 Consensus size: 73
22919760 AAAAAATTCA
* * *
22919770 AATTTAACCCCTAAATTTTTCAAAAATTCAAATTTAACCCCTAAAATTTGT-AAAAATTCAAATT
1 AATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCT-AAATTTGTCAAAAATTCAAATT
22919834 TGAAATTTG
65 TGAAATTTG
* * * * *
22919843 AATTTGACCCCCAAACTTTCCAAAAATTTAAATTTGACCCCTAAATTTTTCAAAAATTCCAATTT
1 AATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAATTTGTCAAAAATTCAAATTT
22919908 AACCCTCAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 7 0.12
73 49 0.88
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.36
Consensus pattern (73 bp):
AATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAATTTGTCAAAAATTCAAATTT
GAAATTTG
Found at i:22919871 original size:30 final size:30
Alignment explanation
Indices: 22919836--22919960 Score: 110
Period size: 30 Copynumber: 4.2 Consensus size: 30
22919826 TTCAAATTTG
*
22919836 AAATTTGAATTTGACCCCCAAACTTTCCAA
1 AAATTTGAATTTGACCCCCAAATTTTCCAA
* * *
22919866 AAATTTAAATTTGACCCCTAAATTTTTCAA
1 AAATTTGAATTTGACCCCCAAATTTTCCAA
** * *
22919896 AAATTCCAATTTAACCCTCAAATTTTCCAA
1 AAATTTGAATTTGACCCCCAAATTTTCCAA
* * * *
22919926 ATACTCTG-ATTTGACCCCTGAAGTTTT-CAA
1 A-AATTTGAATTTGACCCC-CAAATTTTCCAA
22919956 AAATT
1 AAATT
22919961 CAAATTTAAC
Statistics
Matches: 73, Mismatches: 20, Indels: 5
0.74 0.20 0.05
Matches are distributed among these distances:
29 2 0.03
30 63 0.86
31 8 0.11
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.35
Consensus pattern (30 bp):
AAATTTGAATTTGACCCCCAAATTTTCCAA
Found at i:22919900 original size:60 final size:60
Alignment explanation
Indices: 22919843--22919970 Score: 159
Period size: 60 Copynumber: 2.1 Consensus size: 60
22919833 TTGAAATTTG
* * *
22919843 AATTTGACCCCCAAACTTTCCAAA-AATTTAAATTTGACCCCTAAATTTTTCAAAAATTCC
1 AATTTAACCCCCAAACTTTCCAAATAATCT-AATTTGACCCCTAAAGTTTTCAAAAATTCC
* * * * * *
22919903 AATTTAACCCTCAAATTTTCCAAATACTCTGATTTGACCCCTGAAGTTTTCAAAAATTCA
1 AATTTAACCCCCAAACTTTCCAAATAATCTAATTTGACCCCTAAAGTTTTCAAAAATTCC
22919963 AATTTAAC
1 AATTTAAC
22919971 TCGGTTTTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 55 0.95
61 3 0.05
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (60 bp):
AATTTAACCCCCAAACTTTCCAAATAATCTAATTTGACCCCTAAAGTTTTCAAAAATTCC
Found at i:22919920 original size:73 final size:73
Alignment explanation
Indices: 22919767--22919920 Score: 168
Period size: 73 Copynumber: 2.1 Consensus size: 73
22919757 TCCAAAAAAT
* * *
22919767 TCAAATTTAACCCCTAAATTTTTCAAAAATTCAAATTTAACCCCTAAAATTTGTAAAAATTCAAA
1 TCAAATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAAATTTGTAAAAATTCAAA
*
22919832 TTTGAAAT
66 TTTGAAAC
** * * * * *
22919840 TTGAATTTGACCCCCAAACTTTCCAAAAATTTAAATTTGACCCCT-AAATTTTTCAAAAATTCCA
1 TCAAATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAAATTTGT-AAAAATTCAA
*
22919904 ATTT-AACCC
65 ATTTGAA-AC
22919913 TCAAATTT
1 TCAAATTT
22919921 TCCAAATACT
Statistics
Matches: 65, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
72 9 0.14
73 56 0.86
ACGTcount: A:0.41, C:0.20, G:0.03, T:0.36
Consensus pattern (73 bp):
TCAAATTTAACCCCCAAACTTTCCAAAAATTCAAATTTAACCCCTAAAATTTGTAAAAATTCAAA
TTTGAAAC
Found at i:22922048 original size:31 final size:31
Alignment explanation
Indices: 22922013--22922084 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 31
22922003 TGCATATGCA
22922013 TTCATGCATTCATCAAA-TTTCACATCGCATT
1 TTCATGCATTCAT-AAAGTTTCACATCGCATT
** *
22922044 TTCATGCATTCATAAAGTTTTGCATTGCATT
1 TTCATGCATTCATAAAGTTTCACATCGCATT
22922075 TTCATGCATT
1 TTCATGCATT
22922085 AAAATATCGA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
30 3 0.08
31 34 0.92
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.43
Consensus pattern (31 bp):
TTCATGCATTCATAAAGTTTCACATCGCATT
Found at i:22930921 original size:50 final size:50
Alignment explanation
Indices: 22930841--22930954 Score: 167
Period size: 50 Copynumber: 2.3 Consensus size: 50
22930831 GATGAGTCCT
*
22930841 ATACCCCTAAAGCTGTAGAGGAACAAATTGAAGCCGCAATGGCAAATCTC
1 ATACACCTAAAGCTGTAGAGGAACAAATTGAAGCCGCAATGGCAAATCTC
* * *
22930891 ATACACCTAAAGCTGTAGA-GAGGCAAATTGAAGCTGCAATGGCTAATCTC
1 ATACACCTAAAGCTGTAGAGGA-ACAAATTGAAGCCGCAATGGCAAATCTC
*
22930941 ATTCACCTAAAGCT
1 ATACACCTAAAGCT
22930955 TTAAAGGGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
49 2 0.03
50 56 0.97
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (50 bp):
ATACACCTAAAGCTGTAGAGGAACAAATTGAAGCCGCAATGGCAAATCTC
Found at i:22930969 original size:50 final size:50
Alignment explanation
Indices: 22930841--22930969 Score: 154
Period size: 50 Copynumber: 2.6 Consensus size: 50
22930831 GATGAGTCCT
*
22930841 ATACCCCTAAAGCTGT--AGAGGAACAAATTGAAGCCGCAATGGCAAATCTC
1 ATACACCTAAAGCTGTAAAGAGG-A-AAATTGAAGCCGCAATGGCAAATCTC
* * * *
22930891 ATACACCTAAAGCTGTAGAGAGGCAAATTGAAGCTGCAATGGCTAATCTC
1 ATACACCTAAAGCTGTAAAGAGGAAAATTGAAGCCGCAATGGCAAATCTC
* * *
22930941 ATTCACCTAAAGCTTTAAAGGGGAAAATT
1 ATACACCTAAAGCTGTAAAGAGGAAAATT
22930970 AAAGTCACAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 63 0.93
52 5 0.07
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (50 bp):
ATACACCTAAAGCTGTAAAGAGGAAAATTGAAGCCGCAATGGCAAATCTC
Found at i:22931093 original size:39 final size:39
Alignment explanation
Indices: 22931044--22931239 Score: 166
Period size: 39 Copynumber: 5.0 Consensus size: 39
22931034 TTTTACCCCG
*
22931044 ACCACGGGGCAGATTGAAACAATCCAATCTTTTACCTTA
1 ACCATGGGGCAGATTGAAACAATCCAATCTTTTACCTTA
* * * * *
22931083 ACTA-GAGGGCAGATTGAAGACAATCCGATCTCTTACCCTG
1 ACCATG-GGGCAGATTGAA-ACAATCCAATCTTTTACCTTA
** * * *
22931123 ACCATGGCACAGATTGAAGCAATTCAATCTTTTACCCTA
1 ACCATGGGGCAGATTGAAACAATCCAATCTTTTACCTTA
* * *
22931162 ACCA-GAGGGCAGATTGAAGACCAT-CAGATCTCTTACCTCGA
1 ACCATG-GGGCAGATTGAA-ACAATCCA-ATCTTTTACCT-TA
* *
22931203 A-CATGGGGTAGATTGAAACAATTCAATCTTTTACCTT
1 ACCATGGGGCAGATTGAAACAATCCAATCTTTTACCTT
22931240 TAAAACTATA
Statistics
Matches: 124, Mismatches: 24, Indels: 19
0.74 0.14 0.11
Matches are distributed among these distances:
38 2 0.02
39 61 0.49
40 57 0.46
41 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (39 bp):
ACCATGGGGCAGATTGAAACAATCCAATCTTTTACCTTA
Found at i:22931152 original size:79 final size:79
Alignment explanation
Indices: 22931030--22931239 Score: 287
Period size: 79 Copynumber: 2.7 Consensus size: 79
22931020 TATAACCTCT
* * * * *
22931030 GATCTTTTACCCCGACCACGGGGCAGATTGAAACAATCCAATCTTTTACCTTAACTAGAGGGCAG
1 GATCTCTTACCCTGACCATGGGGCAGATTGAAACAATTCAATCTTTTACCTTAACCAGAGGGCAG
*
22931095 ATTGAAGACAATCC
66 ATTGAAGACAATCA
** * *
22931109 GATCTCTTACCCTGACCATGGCACAGATTGAAGCAATTCAATCTTTTACCCTAACCAGAGGGCAG
1 GATCTCTTACCCTGACCATGGGGCAGATTGAAACAATTCAATCTTTTACCTTAACCAGAGGGCAG
*
22931174 ATTGAAGACCATCA
66 ATTGAAGACAATCA
* *
22931188 GATCTCTTA-CCTCGAACATGGGGTAGATTGAAACAATTCAATCTTTTACCTT
1 GATCTCTTACCCT-GACCATGGGGCAGATTGAAACAATTCAATCTTTTACCTT
22931240 TAAAACTATA
Statistics
Matches: 113, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
78 3 0.03
79 110 0.97
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (79 bp):
GATCTCTTACCCTGACCATGGGGCAGATTGAAACAATTCAATCTTTTACCTTAACCAGAGGGCAG
ATTGAAGACAATCA
Found at i:22932641 original size:30 final size:30
Alignment explanation
Indices: 22932607--22932822 Score: 161
Period size: 30 Copynumber: 7.2 Consensus size: 30
22932597 ACTTTATTTT
* * *
22932607 AAAATTATGTTTTGACCCCTAAATTTTTCA
1 AAAATTATGATTTGACCCCTAAACTTTCCA
* * *
22932637 AAAATTCA-AATTTGACCCCTTAATTTTCC-
1 AAAATT-ATGATTTGACCCCTAAACTTTCCA
* * * *
22932666 CAAATTTTAAATTTGAACCCTAAACTTTCCA
1 AAAATTAT-GATTTGACCCCTAAACTTTCCA
*
22932697 AAAATT-TGAATTTGACCCTTAAACTTTCCA
1 AAAATTATG-ATTTGACCCCTAAACTTTCCA
* * * *
22932727 AAAATT-TGAATTTAACCCATAAATTTTTCA
1 AAAATTATG-ATTTGACCCCTAAACTTTCCA
***
22932757 AAAATTCCAATTTGACCCCTAAACTTTCCA
1 AAAATTATGATTTGACCCCTAAACTTTCCA
* * * * *
22932787 AATACTATGATTTGACCCCTGAAGTTCCCA
1 AAAATTATGATTTGACCCCTAAACTTTCCA
22932817 AAAATT
1 AAAATT
22932823 TAAATTTAAC
Statistics
Matches: 147, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
29 5 0.03
30 136 0.93
31 6 0.04
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.36
Consensus pattern (30 bp):
AAAATTATGATTTGACCCCTAAACTTTCCA
Found at i:22932681 original size:60 final size:60
Alignment explanation
Indices: 22932617--22932834 Score: 206
Period size: 60 Copynumber: 3.6 Consensus size: 60
22932607 AAAATTATGT
* *
22932617 TTTGACCCCTAAATTTTTCAAAAATTCAAATTTGACCCCTTAATTTTCCCAAATTTTAAA
1 TTTGACCCCTAAATTTTCCAAAAATTCAAATTTGACCCCTTAACTTTCCCAAATTTTAAA
* * ** * * *
22932677 TTTGAACCCTAAACTTTCCAAAAATTTGAATTTGA-CCCTTAAACTTTCCAAAAATTTGAA
1 TTTGACCCCTAAATTTTCCAAAAATTCAAATTTGACCCCTT-AACTTTCCCAAATTTTAAA
* * * * * ** *
22932737 TTTAACCCATAAATTTTTCAAAAATTCCAATTTGACCCCTAAACTTT-CCAAATACTATGA
1 TTTGACCCCTAAATTTTCCAAAAATTCAAATTTGACCCCTTAACTTTCCCAAATTTTA-AA
* * * * *
22932797 TTTGACCCCTGAAGTTCCCAAAAATTTAAATTTAACCC
1 TTTGACCCCTAAATTTTCCAAAAATTCAAATTTGACCC
22932835 GATTTTAATG
Statistics
Matches: 123, Mismatches: 32, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
59 10 0.08
60 109 0.89
61 4 0.03
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (60 bp):
TTTGACCCCTAAATTTTCCAAAAATTCAAATTTGACCCCTTAACTTTCCCAAATTTTAAA
Found at i:22932752 original size:90 final size:90
Alignment explanation
Indices: 22932612--22932834 Score: 250
Period size: 90 Copynumber: 2.5 Consensus size: 90
22932602 ATTTTAAAAT
* * * * * * * * * *
22932612 TATGTTTTGACCCCTAAATTTTTCAAAAATTCAAATTTGACCCCTTAATTTTCCCAAATTTTAAA
1 TATGATTTGACCCCTAAACTTTCCAAAAATTTAAATTTAACCCATAAATTTTCCAAAAATTCAAA
22932677 TTTGAACCCTAAACTTTCCAAA-AA
66 TTTGAACCCTAAACTTTCCAAATAA
* * * * *
22932701 TTTGAATTTGACCCTTAAACTTTCCAAAAATTTGAATTTAACCCATAAATTTTTCAAAAATTCCA
1 TATG-ATTTGACCCCTAAACTTTCCAAAAATTTAAATTTAACCCATAAATTTTCCAAAAATTCAA
* *
22932766 ATTTGACCCCTAAACTTTCCAAATAC
65 ATTTGAACCCTAAACTTTCCAAATAA
* * *
22932792 TATGATTTGACCCCTGAAGTTCCCAAAAATTTAAATTTAACCC
1 TATGATTTGACCCCTAAACTTTCCAAAAATTTAAATTTAACCC
22932835 GATTTTAATG
Statistics
Matches: 109, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
89 3 0.03
90 102 0.94
91 4 0.04
ACGTcount: A:0.36, C:0.22, G:0.05, T:0.36
Consensus pattern (90 bp):
TATGATTTGACCCCTAAACTTTCCAAAAATTTAAATTTAACCCATAAATTTTCCAAAAATTCAAA
TTTGAACCCTAAACTTTCCAAATAA
Found at i:22932924 original size:23 final size:21
Alignment explanation
Indices: 22932888--22932931 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
22932878 TATATTATTT
22932888 TATTGTGTTGTATTTTATGTATA
1 TATTGTGTTGTA--TTATGTATA
* *
22932911 TATTGTTTTTTATTATGTATA
1 TATTGTGTTGTATTATGTATA
22932932 CTTGTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.47
23 10 0.53
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.64
Consensus pattern (21 bp):
TATTGTGTTGTATTATGTATA
Found at i:22950790 original size:328 final size:328
Alignment explanation
Indices: 22950193--22950849 Score: 1314
Period size: 328 Copynumber: 2.0 Consensus size: 328
22950183 ACCTTATAAA
22950193 AAACCTATTGATTTGATGATTATCTCACCTACATTAGTGGAGAGGAAGTACTAAGTTCAACATAT
1 AAACCTATTGATTTGATGATTATCTCACCTACATTAGTGGAGAGGAAGTACTAAGTTCAACATAT
22950258 GAAGATCCTAAATAAGCCTTATGATTGTTTTGTTTAGATTAATAAGAAATTATGTTGAGTGAAGA
66 GAAGATCCTAAATAAGCCTTATGATTGTTTTGTTTAGATTAATAAGAAATTATGTTGAGTGAAGA
22950323 ATGTTATCTATAATTGTGACATACATACGAACCATGACTCATGTTGACATATCTTGAAACTTAGT
131 ATGTTATCTATAATTGTGACATACATACGAACCATGACTCATGTTGACATATCTTGAAACTTAGT
22950388 ATAAAATTCTAAATAATGTTTGCATGTGAACTACTTATTAATAAAGAAGATTTATGAACATGAAT
196 ATAAAATTCTAAATAATGTTTGCATGTGAACTACTTATTAATAAAGAAGATTTATGAACATGAAT
22950453 TTGTTGATGCATGATTATGAGACAAAGATTGATGCTGCTTATACATTTAGCAATTTTGCCTTAGC
261 TTGTTGATGCATGATTATGAGACAAAGATTGATGCTGCTTATACATTTAGCAATTTTGCCTTAGC
22950518 AAG
326 AAG
22950521 AAACCTATTGATTTGATGATTATCTCACCTACATTAGTGGAGAGGAAGTACTAAGTTCAACATAT
1 AAACCTATTGATTTGATGATTATCTCACCTACATTAGTGGAGAGGAAGTACTAAGTTCAACATAT
22950586 GAAGATCCTAAATAAGCCTTATGATTGTTTTGTTTAGATTAATAAGAAATTATGTTGAGTGAAGA
66 GAAGATCCTAAATAAGCCTTATGATTGTTTTGTTTAGATTAATAAGAAATTATGTTGAGTGAAGA
22950651 ATGTTATCTATAATTGTGACATACATACGAACCATGACTCATGTTGACATATCTTGAAACTTAGT
131 ATGTTATCTATAATTGTGACATACATACGAACCATGACTCATGTTGACATATCTTGAAACTTAGT
22950716 ATAAAATTCTAAATAATGTTTGCATGTGAACTACTTATTAATAAAGAAGATTTATGAACATGAAT
196 ATAAAATTCTAAATAATGTTTGCATGTGAACTACTTATTAATAAAGAAGATTTATGAACATGAAT
22950781 TTGTTGATGCATGATTATGAGACAAAGATTGATGCTGCTTATACATTTAGCAATTTTGCCTTAGC
261 TTGTTGATGCATGATTATGAGACAAAGATTGATGCTGCTTATACATTTAGCAATTTTGCCTTAGC
22950846 AAG
326 AAG
22950849 A
1 A
22950850 CCTTTGTCGT
Statistics
Matches: 329, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
328 329 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (328 bp):
AAACCTATTGATTTGATGATTATCTCACCTACATTAGTGGAGAGGAAGTACTAAGTTCAACATAT
GAAGATCCTAAATAAGCCTTATGATTGTTTTGTTTAGATTAATAAGAAATTATGTTGAGTGAAGA
ATGTTATCTATAATTGTGACATACATACGAACCATGACTCATGTTGACATATCTTGAAACTTAGT
ATAAAATTCTAAATAATGTTTGCATGTGAACTACTTATTAATAAAGAAGATTTATGAACATGAAT
TTGTTGATGCATGATTATGAGACAAAGATTGATGCTGCTTATACATTTAGCAATTTTGCCTTAGC
AAG
Found at i:22966755 original size:30 final size:30
Alignment explanation
Indices: 22966721--22966804 Score: 114
Period size: 30 Copynumber: 2.8 Consensus size: 30
22966711 CACAACACAA
* *
22966721 GTGTTCGCAACATCAGTGTTCGCATGGTGT
1 GTGTTCGCAACATGAGTGTTCACATGGTGT
* * *
22966751 GTGTTTGTAACATGAGTGTTCACATTGTGT
1 GTGTTCGCAACATGAGTGTTCACATGGTGT
*
22966781 GTGTTCGCAACATGAGTGCTCACA
1 GTGTTCGCAACATGAGTGTTCACA
22966805 ACATCAGTGC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (30 bp):
GTGTTCGCAACATGAGTGTTCACATGGTGT
Found at i:22969210 original size:15 final size:15
Alignment explanation
Indices: 22969190--22969233 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
22969180 CCATGCTCGC
22969190 AACACGAGTGTTCGT
1 AACACGAGTGTTCGT
22969205 AACACGAGTGTTCGT
1 AACACGAGTGTTCGT
22969220 AACATC-AGTGTTCG
1 AACA-CGAGTGTTCG
22969234 CATTCTGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 27 0.96
16 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (15 bp):
AACACGAGTGTTCGT
Found at i:22969278 original size:30 final size:30
Alignment explanation
Indices: 22969244--22969302 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
22969234 CATTCTGTGT
* *
22969244 ATTCGCAACATGAGTGTTCACAACTCCAGC
1 ATTCGCAACATGAGTGCTCACAACACCAGC
22969274 ATTCGCAACATGAGTGCTCACAACACCAG
1 ATTCGCAACATGAGTGCTCACAACACCAG
22969303 TGCTCGCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (30 bp):
ATTCGCAACATGAGTGCTCACAACACCAGC
Found at i:22969354 original size:15 final size:15
Alignment explanation
Indices: 22969333--22969386 Score: 90
Period size: 15 Copynumber: 3.6 Consensus size: 15
22969323 GCAAAGTCCA
*
22969333 TGCTCGCATTATTCG
1 TGCTCGCATTACTCG
*
22969348 TGTTCGCATTACTCG
1 TGCTCGCATTACTCG
22969363 TGCTCGCATTACTCG
1 TGCTCGCATTACTCG
22969378 TGCTCGCAT
1 TGCTCGCAT
22969387 CATTAACAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.13, C:0.30, G:0.20, T:0.37
Consensus pattern (15 bp):
TGCTCGCATTACTCG
Found at i:22972784 original size:48 final size:48
Alignment explanation
Indices: 22972697--22972791 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
22972687 TGAAGATAAG
22972697 TGGTCATTTTTGGCAATTATGTGGTAGCTTATATGCAAAGTGATTATA
1 TGGTCATTTTTGGCAATTATGTGGTAGCTTATATGCAAAGTGATTATA
* *
22972745 TGGTTATTTTTGGCAATTATGTGGTAGTTTAT-TGTCAAAGTGATTAT
1 TGGTCATTTTTGGCAATTATGTGGTAGCTTATATG-CAAAGTGATTAT
22972792 GTGTTTATGT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 2 0.05
48 42 0.95
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.45
Consensus pattern (48 bp):
TGGTCATTTTTGGCAATTATGTGGTAGCTTATATGCAAAGTGATTATA
Found at i:22977239 original size:54 final size:54
Alignment explanation
Indices: 22977132--22977462 Score: 411
Period size: 54 Copynumber: 6.2 Consensus size: 54
22977122 GAGCTCCGTT
* *
22977132 ATCGAACCTTTAATCCGTAATAGGA-TTCATATTACTCACGATGACACAGAGTC
1 ATCGAACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
* * *
22977185 ATCGAACCTTTAATCTATAATAGGATTTCATATAACTCGCGATGACATAGAGTC
1 ATCGAACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
* * * *
22977239 ATTGGACCTTTAATCCATAACAGGATTTCATATAATTCACGATGACACAGAGTC
1 ATCGAACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
** * * *
22977293 ATC-AGAGTTTTAATCCGTAATAGGATTTCATATAACTCACGATAACAAAGAGTC
1 ATCGA-ACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
*
22977347 ATC-AGACCTTTAATCCGTAATAGGATTTCATATAACTCACGATGACACAGAGTC
1 ATCGA-ACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
* * * **
22977401 ATCGGACCTTTAAT-CAGTAATAGG-GTTCATGTAACTCATAATGACACAGAGTC
1 ATCGAACCTTTAATCCA-TAATAGGATTTCATATAACTCACGATGACACAGAGTC
*
22977454 ATCGGACCT
1 ATCGAACCT
22977463 ATTTGCATTT
Statistics
Matches: 243, Mismatches: 31, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
53 58 0.24
54 185 0.76
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (54 bp):
ATCGAACCTTTAATCCATAATAGGATTTCATATAACTCACGATGACACAGAGTC
Found at i:22977410 original size:162 final size:160
Alignment explanation
Indices: 22977140--22977456 Score: 458
Period size: 162 Copynumber: 2.0 Consensus size: 160
22977130 TTATCGAACC
* * * *
22977140 TTTAATCCGTAATAGGATTCATATTACTCACGATGACACAGAGTCATCGAACCTTTAATCTATAA
1 TTTAATCCGTAATAGGATTCATATAACTCACGATAACAAAGAGTCATCGAACCTTTAATCCATAA
* * * *
22977205 TAGGATTTCATATAACTCGCGATGACATAGAGTCATTGGACCTTTAATCCA-TAACAGGATTTCA
66 TAGGATTTCATATAACTCACGATGACACAGAGTCATCGGACCTTTAAT-CAGTAACAGG-GTTCA
* *
22977269 TATAATTCACGATGACACAGAGTCATCAGAGT
129 TATAACTCACAATGACACAGAGTCATCAGAGT
*
22977301 TTTAATCCGTAATAGGATTTCATATAACTCACGATAACAAAGAGTCATC-AGACCTTTAATCCGT
1 TTTAATCCGTAATAGGA-TTCATATAACTCACGATAACAAAGAGTCATCGA-ACCTTTAATCCAT
*
22977365 AATAGGATTTCATATAACTCACGATGACACAGAGTCATCGGACCTTTAATCAGTAATAGGGTTCA
64 AATAGGATTTCATATAACTCACGATGACACAGAGTCATCGGACCTTTAATCAGTAACAGGGTTCA
* *
22977430 TGTAACTCATAATGACACAGAGTCATC
129 TATAACTCACAATGACACAGAGTCATC
22977457 GGACCTATTT
Statistics
Matches: 139, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
161 47 0.34
162 92 0.66
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (160 bp):
TTTAATCCGTAATAGGATTCATATAACTCACGATAACAAAGAGTCATCGAACCTTTAATCCATAA
TAGGATTTCATATAACTCACGATGACACAGAGTCATCGGACCTTTAATCAGTAACAGGGTTCATA
TAACTCACAATGACACAGAGTCATCAGAGT
Found at i:22982275 original size:53 final size:53
Alignment explanation
Indices: 22982195--22982419 Score: 319
Period size: 53 Copynumber: 4.3 Consensus size: 53
22982185 CAGGAGCTCC
* * * *
22982195 GTCATCGGACCTTTAATTCGTAATAGGATTCATATGACTCATGATGACATAGA
1 GTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGATGACACAGA
*
22982248 GTCATCGGACCTTTAATCCGTAATAGGATTCATATGACTCACGATGACACAGA
1 GTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGATGACACAGA
* * * *
22982301 GTCATCGAACCTTTAATCTGTAATATGATTTCATATAACTGACGATG--ACAGA
1 GTCATCGGACCTTTAATCCGTAATAGGA-TTCATATAACTCACGATGACACAGA
* * *
22982353 GTCATCGGACCTTTAATTCGTAATAGGATTCATGTAACTCACGATGACACAAA
1 GTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGATGACACAGA
22982406 GTCATCGGACCTTT
1 GTCATCGGACCTTT
22982420 TTGCATTTAC
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
51 16 0.10
52 29 0.19
53 93 0.60
54 16 0.10
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (53 bp):
GTCATCGGACCTTTAATCCGTAATAGGATTCATATAACTCACGATGACACAGA
Found at i:22982378 original size:105 final size:105
Alignment explanation
Indices: 22982195--22982419 Score: 328
Period size: 105 Copynumber: 2.1 Consensus size: 105
22982185 CAGGAGCTCC
* *
22982195 GTCATCGGACCTTTAATTCGTAATAGGATTCATATGACTCATGATGACATAGAGTCATCGGACCT
1 GTCATCGGACCTTTAATTCGTAATAGGATTCATATAACTCACGATGACA-AGAGTCATCGGACCT
* *
22982260 TTAATCCGTAATAGGATTCATATGACTCACGATGACACAGA
65 TTAATCCGTAATAGGATTCATATAACTCACGATGACACAAA
* * *
22982301 GTCATCGAACCTTTAA-TCTGTAATATGATTTCATATAACTGACGATGAC-AGAGTCATCGGACC
1 GTCATCGGACCTTTAATTC-GTAATAGGA-TTCATATAACTCACGATGACAAGAGTCATCGGACC
* *
22982364 TTTAATTCGTAATAGGATTCATGTAACTCACGATGACACAAA
64 TTTAATCCGTAATAGGATTCATATAACTCACGATGACACAAA
22982406 GTCATCGGACCTTT
1 GTCATCGGACCTTT
22982420 TTGCATTTAC
Statistics
Matches: 107, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
105 67 0.63
106 23 0.21
107 17 0.16
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (105 bp):
GTCATCGGACCTTTAATTCGTAATAGGATTCATATAACTCACGATGACAAGAGTCATCGGACCTT
TAATCCGTAATAGGATTCATATAACTCACGATGACACAAA
Found at i:22986147 original size:19 final size:19
Alignment explanation
Indices: 22986111--22986173 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
22986101 CTCATGCAAT
* **
22986111 CAAGTAATGCTCTTACGAG
1 CAAGTATTGCTCAAACGAG
* *
22986130 CCAGTATTTCTCAAACGAG
1 CAAGTATTGCTCAAACGAG
*
22986149 CTAGTA-TGCTCAAACGAG
1 CAAGTATTGCTCAAACGAG
22986167 CAAGTAT
1 CAAGTAT
22986174 GCTATTCCTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 16 0.46
19 19 0.54
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (19 bp):
CAAGTATTGCTCAAACGAG
Found at i:22986162 original size:18 final size:18
Alignment explanation
Indices: 22986111--22986176 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
22986101 CTCATGCAAT
**
22986111 CAAGTAATGCTCTTACGAG
1 CAAGT-ATGCTCAAACGAG
* *
22986130 CCAGTATTTCTCAAACGAG
1 CAAGTA-TGCTCAAACGAG
*
22986149 CTAGTATGCTCAAACGAG
1 CAAGTATGCTCAAACGAG
22986167 CAAGTATGCT
1 CAAGTATGCT
22986177 ATTCCTTCCG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 21 0.54
19 18 0.46
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (18 bp):
CAAGTATGCTCAAACGAG
Found at i:22989996 original size:6 final size:6
Alignment explanation
Indices: 22989987--22990028 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
22989977 TATCTTCTTG
* * *
22989987 TTTTTC TTTTTC TTTTTC TTCTTG TTTTTC ATTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
22990029 CTCTTGAGAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:22990011 original size:24 final size:24
Alignment explanation
Indices: 22989979--22990034 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
22989969 TGTATGGGTA
*
22989979 TCTTCTTGTTTTTCTTTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
22990003 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTTTT
*
22990027 TCCTCTTG
1 TCTTCTTG
22990035 AGAACTCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.02, C:0.20, G:0.05, T:0.73
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCTTTT
Found at i:23005821 original size:48 final size:48
Alignment explanation
Indices: 23005769--23005874 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 48
23005759 ATGAAGCCAC
** *
23005769 CAAATTTGCAGACAAACTACCAGTACATATA-GTTGTGGACAAAACCAT
1 CAAATTTGCAGACAAACTACCAAAAAATATAGGTTGTGGA-AAAACCAT
* * * * * *
23005817 CAAATTCGTAGACAAATTGCCAAAAAATGTAGGTTGTGGATAAACCAT
1 CAAATTTGCAGACAAACTACCAAAAAATATAGGTTGTGGAAAAACCAT
23005865 CAAATTTGCA
1 CAAATTTGCA
23005875 TATTAATATT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
48 38 0.83
49 8 0.17
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.25
Consensus pattern (48 bp):
CAAATTTGCAGACAAACTACCAAAAAATATAGGTTGTGGAAAAACCAT
Found at i:23006743 original size:33 final size:33
Alignment explanation
Indices: 23006706--23006770 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
23006696 TTGAATAATG
*
23006706 ATATGATTTTGATGT-GGTGGTGGT-GTGGTGGTT
1 ATATGATGTTGAT-TCGGTGGTGGTAG-GGTGGTT
*
23006739 ATATGGTGTTGATTCGGTGGTGGTAGGGTGGT
1 ATATGATGTTGATTCGGTGGTGGTAGGGTGGT
23006771 GATTTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
32 1 0.04
33 26 0.93
34 1 0.04
ACGTcount: A:0.12, C:0.02, G:0.45, T:0.42
Consensus pattern (33 bp):
ATATGATGTTGATTCGGTGGTGGTAGGGTGGTT
Found at i:23006789 original size:22 final size:22
Alignment explanation
Indices: 23006721--23006789 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
23006711 ATTTTGATGT
* * *
23006721 GGTGGTGGTGTGGTGGTTATAT-
1 GGTGGTGATTTGGTGGTTGT-TG
* * * *
23006743 GGTGTTGATTCGGTGGTGGTAG
1 GGTGGTGATTTGGTGGTTGTTG
23006765 GGTGGTGATTTGGTGGTTGTTG
1 GGTGGTGATTTGGTGGTTGTTG
23006787 GGT
1 GGT
23006790 AGTGTTTCGA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.07, C:0.01, G:0.51, T:0.41
Consensus pattern (22 bp):
GGTGGTGATTTGGTGGTTGTTG
Found at i:23007921 original size:30 final size:30
Alignment explanation
Indices: 23007881--23007958 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
23007871 TCCATTTAAC
* * *
23007881 TTAGTTAGCCACAGAGGCATCCACATATCA
1 TTAGATAGCCACAAAGGCATCCACACATCA
*
23007911 TTAGATAGCCACAAAGGCATCCAGACATCA
1 TTAGATAGCCACAAAGGCATCCACACATCA
23007941 TTAGATAGCCACAAAGGC
1 TTAGATAGCCACAAAGGC
23007959 GTCTAGATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.19
Consensus pattern (30 bp):
TTAGATAGCCACAAAGGCATCCACACATCA
Found at i:23008141 original size:61 final size:61
Alignment explanation
Indices: 23008062--23008209 Score: 251
Period size: 61 Copynumber: 2.4 Consensus size: 61
23008052 ATAGAGTAGA
* *
23008062 GAACAGTCACAAAGGCTTCCACATATAACAAGTTCCGCCACTAGGGCTCACATGTAACAAG
1 GAACAGCCACAAACGCTTCCACATATAACAAGTTCCGCCACTAGGGCTCACATGTAACAAG
* * *
23008123 GAACAGCCACAAACGCTTCCACATATAACCAGTTCTGCCACTAGGGCTCACATGTAATAAG
1 GAACAGCCACAAACGCTTCCACATATAACAAGTTCCGCCACTAGGGCTCACATGTAACAAG
23008184 GAACAGCCACAAACGCTTCCACATAT
1 GAACAGCCACAAACGCTTCCACATAT
23008210 CAAAGAATAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 82 1.00
ACGTcount: A:0.36, C:0.30, G:0.16, T:0.18
Consensus pattern (61 bp):
GAACAGCCACAAACGCTTCCACATATAACAAGTTCCGCCACTAGGGCTCACATGTAACAAG
Found at i:23008175 original size:29 final size:29
Alignment explanation
Indices: 23008081--23008175 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
23008071 CAAAGGCTTC
*
23008081 CACATATAACAAGTTCCGCCACTAGGGCT
1 CACATATAACAAGTTCAGCCACTAGGGCT
* ** * **
23008110 CACATGTAACAAGGAACAGCCACAAACGCTT
1 CACATATAACAA-GTTCAGCCACTAGGGC-T
* *
23008141 CCACATATAACCAGTTCTGCCACTAGGGCT
1 -CACATATAACAAGTTCAGCCACTAGGGCT
23008171 CACAT
1 CACAT
23008176 GTAATAAGGA
Statistics
Matches: 48, Mismatches: 15, Indels: 6
0.70 0.22 0.09
Matches are distributed among these distances:
29 16 0.33
30 11 0.23
31 11 0.23
32 10 0.21
ACGTcount: A:0.34, C:0.32, G:0.16, T:0.19
Consensus pattern (29 bp):
CACATATAACAAGTTCAGCCACTAGGGCT
Found at i:23008193 original size:30 final size:30
Alignment explanation
Indices: 23008098--23008193 Score: 86
Period size: 30 Copynumber: 3.2 Consensus size: 30
23008088 AACAAGTTCC
23008098 GCCACTAGGGCTCACATGTAACAAGGAACA
1 GCCACTAGGGCTCACATGTAACAAGGAACA
* ** * * ** *
23008128 GCCACAAACGCTTCCACATATAACCA-GTTCT
1 GCCACTAGGGC-T-CACATGTAACAAGGAACA
*
23008159 GCCACTAGGGCTCACATGTAATAAGGAACA
1 GCCACTAGGGCTCACATGTAACAAGGAACA
23008189 GCCAC
1 GCCAC
23008194 AAACGCTTCC
Statistics
Matches: 46, Mismatches: 17, Indels: 6
0.67 0.25 0.09
Matches are distributed among these distances:
29 9 0.20
30 16 0.35
31 11 0.24
32 10 0.22
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (30 bp):
GCCACTAGGGCTCACATGTAACAAGGAACA
Found at i:23008207 original size:32 final size:32
Alignment explanation
Indices: 23008110--23008207 Score: 94
Period size: 32 Copynumber: 3.2 Consensus size: 32
23008100 CACTAGGGCT
23008110 CACATGTAACAAGGAACAGCCACAAACGCTTC
1 CACATGTAACAAGGAACAGCCACAAACGCTTC
* * ** * * **
23008142 CACATATAACCA-GTTCTGCCACTAGGGC-T-
1 CACATGTAACAAGGAACAGCCACAAACGCTTC
*
23008171 CACATGTAATAAGGAACAGCCACAAACGCTTC
1 CACATGTAACAAGGAACAGCCACAAACGCTTC
23008203 CACAT
1 CACAT
23008208 ATCAAAGAAT
Statistics
Matches: 46, Mismatches: 17, Indels: 6
0.67 0.25 0.09
Matches are distributed among these distances:
29 9 0.20
30 11 0.24
31 11 0.24
32 15 0.33
ACGTcount: A:0.37, C:0.31, G:0.15, T:0.17
Consensus pattern (32 bp):
CACATGTAACAAGGAACAGCCACAAACGCTTC
Found at i:23008226 original size:30 final size:30
Alignment explanation
Indices: 23008185--23008349 Score: 208
Period size: 30 Copynumber: 5.5 Consensus size: 30
23008175 TGTAATAAGG
* * * *
23008185 AACAGCCACAAACGCTTCCACATATCAAAG
1 AACAGCTACAAAGGCTTTCACATATCAAAA
*
23008215 AATAGCTACAAAGGCTTTCACATATCAAAA
1 AACAGCTACAAAGGCTTTCACATATCAAAA
*
23008245 AACAGCTACAAAAGCTTTCACATATCAAAA
1 AACAGCTACAAAGGCTTTCACATATCAAAA
*
23008275 AACAGCTATAAAGGCTTTCACATATCAAAA
1 AACAGCTACAAAGGCTTTCACATATCAAAA
* * *
23008305 AACAG-TCACAAAGACTTTCACATATCAGAG
1 AACAGCT-ACAAAGGCTTTCACATATCAAAA
23008335 AACAG-TCACAAAGGC
1 AACAGCT-ACAAAGGC
23008350 ATCACTTTTA
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 1 0.01
30 119 0.99
ACGTcount: A:0.46, C:0.24, G:0.11, T:0.19
Consensus pattern (30 bp):
AACAGCTACAAAGGCTTTCACATATCAAAA
Found at i:23010866 original size:17 final size:16
Alignment explanation
Indices: 23010830--23010880 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
23010820 TTACTTTCAC
*
23010830 ATTTCTCGTATTATTT
1 ATTTTTCGTATTATTT
*
23010846 ATTTTTCGTATTTTATT
1 ATTTTTCGTATTAT-TT
**
23010863 ATTTTTATTATTATTT
1 ATTTTTCGTATTATTT
23010879 AT
1 AT
23010881 AAACCCAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.69
Consensus pattern (16 bp):
ATTTTTCGTATTATTT
Found at i:23016910 original size:19 final size:18
Alignment explanation
Indices: 23016877--23016932 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
23016867 CAATGTACAA
*
23016877 AAAAT-AAAAATATATAT
1 AAAATCAAAAAAATATAT
*
23016894 AAACTCAAAAAACATATA-
1 AAAATCAAAAAA-ATATAT
*
23016912 AAAATTAAAAAAATATAT
1 AAAATCAAAAAAATATAT
23016930 AAA
1 AAA
23016933 TAATTATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 9 0.28
18 18 0.56
19 5 0.16
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATCAAAAAAATATAT
Found at i:23016948 original size:20 final size:20
Alignment explanation
Indices: 23016882--23016938 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 20
23016872 TACAAAAAAT
* * *
23016882 AAAAATATATATA-AACTCA
1 AAAAATATATAAATAATTAA
*
23016901 AAAAACATATAAA-AATTAA
1 AAAAATATATAAATAATTAA
23016920 AAAAATATATAAATAATTA
1 AAAAATATATAAATAATTA
23016939 TGAAATTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 27 0.84
20 5 0.16
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAATATATAAATAATTAA
Found at i:23016958 original size:8 final size:9
Alignment explanation
Indices: 23016908--23016967 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
23016898 TCAAAAAACA
23016908 TATAAAAAT
1 TATAAAAAT
*
23016917 TAAAAAAAT
1 TATAAAAAT
23016926 ATATAAATAAT
1 -TATAAA-AAT
*
23016937 TAT-GAAAT
1 TATAAAAAT
23016945 TATAAAAAT
1 TATAAAAAT
23016954 T-TAAAAGAT
1 TATAAAA-AT
23016963 TATAA
1 TATAA
23016968 TATATTAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
8 11 0.26
9 17 0.40
10 11 0.26
11 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (9 bp):
TATAAAAAT
Found at i:23020127 original size:33 final size:32
Alignment explanation
Indices: 23020069--23020132 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
23020059 TCAACACAGA
* *
23020069 AATTAATAATGTTAATGTTGTTAATAAAAAGC
1 AATTAATAATGTTAATATTGATAATAAAAAGC
*
23020101 AATTGAATGATGTTAATATTGATAATAAAAAG
1 AATT-AATAATGTTAATATTGATAATAAAAAG
23020133 GAGTATGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (32 bp):
AATTAATAATGTTAATATTGATAATAAAAAGC
Found at i:23028210 original size:25 final size:24
Alignment explanation
Indices: 23028174--23028220 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
23028164 AAACAACTTC
23028174 TAAAAAAAACTC-AAGAGCAATTCT
1 TAAAAAAAACTCAAAGAG-AATTCT
23028198 TAAAGAAAAACTCAAAGAGAATT
1 TAAA-AAAAACTCAAAGAGAATT
23028221 ATTATTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 4 0.19
25 12 0.57
26 5 0.24
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:23029723 original size:15 final size:14
Alignment explanation
Indices: 23029702--23029751 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
23029692 ATAAGGAAAA
23029702 AGAAAGTGAGAGTG
1 AGAAAGTGAGAGTG
*
23029716 ATGAAAGTGTGAGTG
1 A-GAAAGTGAGAGTG
* *
23029731 AAGAGATTGAGAGTG
1 -AGAAAGTGAGAGTG
23029746 AGAAAG
1 AGAAAG
23029752 AACTTGAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
14 5 0.18
15 22 0.79
16 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.18
Consensus pattern (14 bp):
AGAAAGTGAGAGTG
Found at i:23032001 original size:15 final size:15
Alignment explanation
Indices: 23031983--23032013 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23031973 ACATTGAAGC
23031983 TGCGAACACTCATGT
1 TGCGAACACTCATGT
*
23031998 TGCGAACACTGATGT
1 TGCGAACACTCATGT
23032013 T
1 T
23032014 ACGAGCATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (15 bp):
TGCGAACACTCATGT
Found at i:23036609 original size:216 final size:215
Alignment explanation
Indices: 23036156--23038067 Score: 2289
Period size: 216 Copynumber: 8.9 Consensus size: 215
23036146 TTGGTTCTTG
* * * * *
23036156 GAACTTGTCAAACTTTTACGAGTTCTTTTATTAGTTCGATTCCTTAAAGTATTTAAGACAATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
23036221 TTTCTTCCAGCAATTTTTTGAACATTCCATGCTCGAAAAATCACATCAATTGGTCTAAATAG-TT
66 TTCCTTCGAGCAA-TTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
23036285 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* *
23036350 TTGGTTATTGGACGAACTTTC
195 TTGGTTCTTGGACGAACTTCC
* * *
23036371 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTTAAGTATTAAAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
23036436 TTCCTTCGAGCAATTGTCTGAACATTCCATGCTCGAAAAATCGCATCAATTGGTCTGAATATTTT
66 TTCCTTCGAGCAATT-TCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* *
23036501 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTC
130 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
23036566 TTTGTTTTTGGACGAACATCC
195 TTGGTTCTTGGACGAACTTCC
* * * * *
23036587 GAACTTGTTAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTCAAAGTATTCAAGACTAACCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
23036652 TTCCATT-AAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTT
66 TTCC-TTCGAGCAA-TTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * *
23036716 TGTAATTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAAACTTATTTACATGAGAATTGTTTCTC
129 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTC
* *
23036781 TCTTAGTTCTTGTACGAACTTCC
193 TCTTGGTTCTTGGACGAACTTCC
* * * * * *
23036804 AAACTTGACAAACTGTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAGTATTCAAGATGATCCT
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * *
23036869 TTCCTTCGAGCAGTTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTAGCCTAAATAGTTT
66 TTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* ** * *
23036934 GTCATTTTGTAAACAAGTTATT-TTCTTTGAATTAAAAACTTATTTACGTGCTAATTTTTTCCCT
130 GTCATTTTGTAAACAAGTT-TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
23036998 CTTGGTTATTGGACAAACTTCT
194 CTTGGTTCTTGGACGAACTTCC
* * * * * * *
23037020 GAACTTGTCAAACTGTTACGAGTTCGTTTAAAACTTCGGTTCCATAAAGCATTCAAGACGATACT
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
23037085 TTCTTTCGATCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTT
66 TTCCTTCGAGCAA-TTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
23037150 TTTATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
130 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * *
23037215 TTCGTTCTTGGATGAACTTTC
195 TTGGTTCTTGGACGAACTTCC
* *
23037236 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * * * *
23037301 TTCCTTCGAGTAATTTTTCAAAAATTCCATGCTCGGGAAATTGCCTCTTTTGGTCTAAATAGTTT
66 TTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * *
23037366 GTCATTTTGTGAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTACGTGAGAATTGTTTTGTCT
130 GTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCT
* * *
23037431 TTTGGTTCTTGGACAAACTTCT
194 CTTGGTTCTTGGACGAACTTCC
* * * **
23037453 GAACTTGTCAAACTTTGAAGAGTTTTTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCC
1 GAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCC
* * * * *
23037518 ATTCCTTCGAGCAATTTCCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGCCAAAATAGTT
65 ATTCCTTCGAGCAATTT-CTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
23037583 TTTCATTTTGTAAAGAAGTTTTTGTCTGT-ATATTAAAAACTTATTGATGTGAGAATTGTTTCTC
129 TGTCATTTTGTAAACAAGTTTTGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTC
* * * **
23037647 TCCAT-GTTCTTGGACTAATTTTT
193 T-CTTGGTTCTTGGACGAACTTCC
* * * *
23037670 GAACTTGTAAAACTTTTATGAGTTCTATTATAACTTCGGTTCCTTAAAAG-ATTCAAGACGACCC
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCC
* * * * * * *
23037734 ATTTCTTCGAGCAATTTTTCGAACATTTCTTGCACGGGAAATCGCATCATTTGGTCTAAAAAGTT
65 ATTCCTTCGAGCAATTTCT-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTT
* * * * ***
23037799 TGTCATTTTGTACACAAGTTTTTGTCTATCAATTAAAAACTTATTTACAAAAGAATTGTTTCTCT
129 TGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* *
23037864 CTTGGTTCTTTGACAAACTTCC
194 CTTGGTTCTTGGACGAACTTCC
* * *
23037886 AAACTTGTCAAAATTTTACGAGTTCTTTTATAAGTTC-GTTCCTTAAA-TA---AAGACGATCCA
1 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
23037946 TTCTTTCAAGCTATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTT
66 TTCCTTCGAGC-AATTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
23038011 GTCATTTTTTTAATCAAATTTTGGTCTTTGATTTAAAAACTTATTTATGTGAGAATT
130 GTCA-TTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATT
23038068 TGATGTGAGC
Statistics
Matches: 1445, Mismatches: 229, Indels: 49
0.84 0.13 0.03
Matches are distributed among these distances:
211 62 0.04
212 44 0.03
214 6 0.00
215 128 0.09
216 788 0.55
217 274 0.19
218 143 0.10
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTCGAGCAATTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTG
TCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT
TGGTTCTTGGACGAACTTCC
Found at i:23036894 original size:433 final size:432
Alignment explanation
Indices: 23035685--23038067 Score: 2758
Period size: 433 Copynumber: 5.6 Consensus size: 432
23035675 GATCGTATCA
* * * *
23035685 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACACACTTTCAAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * *
23035750 TCAAACTGTCACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCGTC
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTC
* * * * * *
23035815 GAGCAAATTTT-CAAAAATTCC-TCGCTCGGGAAGTCTCATCATTTGGTC----T-G-TCG---T
131 GAGC-AATTTTCCGAACATTCCAT-GCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAAT
* * * * * * *
23035869 TCTGTAAAAAAGTTTTGGT-CTGTAAATTAAAAACTTATTTGCGTGAGAATTGTTTTTTTC-CAT
194 TTTGTAAACAAGTTTTGGTCCT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA-
* * * **
23035932 GTTCTTGGACGAACTTCCAAACTCGTCAAACTTTTTTGAGTTCTATTTATAACTTCGGTTCCTTA
257 GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTA
* * * ** *
23035997 AAGCATTCAAGACGATCCATTCCTTCGAGCAATTTGTCAAACATTCCATGCTTTTA-AAATTGCA
321 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCGCA
*
23036061 TCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
385 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
23036109 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-G----------GAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * *
23036163 TCAAACTTTTACGAGTTCTTTTATTAGTTCGATTCCTTAAAGTATTTAAGAC-AATCCATTTCTT
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAA-CCATTCCTT
* ** * * * *
23036227 CCAGCAATTTTTTGAACATTCCATGCTCGAAAAATCACATCAATTGGTCTAAATAG-TTGTCATT
130 CGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAATT
* *
23036291 TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTT
195 TTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTT
* * *
23036356 ATTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTTAAGT
260 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* * * *
23036421 ATTAAAGACGATCCATTCCTTCGAGCAA-TTGTCTGAACATTCCATGCTCGAAAAATCGCATCAA
325 ATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCAT
* *
23036485 TTGGTCTGAATATTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
389 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * * * *
23036529 GAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTTGTTTTTGGACGAACATCCGAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * *
23036594 TTAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTCAAAGTATTCAAGACTAACCATTCCATT
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCC-TT
* * * *
23036659 -AAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTAATT
130 CGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAATT
*
23036723 TTGTAAACAAGTTTTGGTCCTTGAATTAAAAAACTTATTTACATGAGAATTGTTTCTCTCTTAGT
195 TTGTAAACAAGTTTTGGTCCTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGT
* * * * * *
23036788 TCTTGTACGAACTTCCAAACTTGACAAACTGTTACGAGTTCTTTTATAAATTCGGTTCCTTAAAG
259 TCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * *
23036853 TATTCAAGATGATCCTTTCCTTCGAGCAGTTTTTCGAACATTCCATGCTCGAGAAATCGCATCAT
324 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCAT
* * *
23036918 TTAGCCTAAATAGTTTGTCATTTTGTAAACAAGTTATT-TTCTTT
389 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT-TTGGTCTTT
** * * * *
23036962 GAATTAAAAACTTATTTACGTGCTAATTTTTTCCCTCTTGGTTATTGGACAAACTTCTGAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * * * *
23037027 TCAAACTGTTACGAGTTCGTTTAAAACTTCGGTTCCATAAAGCATTCAAGACGATA-CTTTCTTT
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-ACCATTCCTT
* * * * *
23037091 CGATCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTTTTTATT
130 CGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAATT
* * *
23037156 TTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTT
195 TTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTT
* *
23037221 CTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGT
260 CTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* * * * * * * *
23037286 ATTCAAGATGATCCATTCCTTCGAGTAATTTTTCAAAAATTCCATGCTCGGGAAATTGCCTCTTT
325 ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATT
*
23037351 TGGTCTAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTCTTT
390 TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* * * *
23037394 GATTTAAAAACTTATTTACGTGAGAATTGTTTTGTCTTTTGGTTCTTGGACAAACTTCTGAACTT
1 GAATTAAAAACTTATTTACGTGAGAATTG-TTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTT
* * * ** *
23037459 GTCAAACTTTGAAGAGTTTTTTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCT
65 GTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCT
* * * * * * *
23037524 TCGAGCAATTTCCCGAACATTCCATGCTTGGGAAATCGCATCATTTGGCCAAAATAGTTTTTCAT
129 TCGAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAAT
* * * * *
23037589 TTTGTAAAGAAGTTTTTGT-C-TGTATATTAAAAACTTATTGATGTGAGAATTGTTTCTCTC-CA
194 TTTGTAAACAAGTTTTGGTCCTTG-A-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTA
* * * * * *
23037651 TGTTCTTGGACTAATTTTTGAACTTGTAAAACTTTTATGAGTTCTATTATAACTTCGGTTCCTTA
257 -GTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT-
* * * * * *
23037716 AAAG-ATTCAAGACGACCCATTTCTTCGAGCAATTTTTCGAACATTTCTTGCACGGGAAATCGCA
320 AAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCA
* * * *
23037780 TCATTTGGTCTAAAAAGTTTGTCATTTTGTACACAAGTTTTTGTCTAT
385 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
* *** * *
23037828 CAATTAAAAACTTATTTACAAAAGAATTGTTTCTCTCTTGGTTCTTTGACAAACTTCCAAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * *
23037893 TCAAAATTTTACGAGTTCTTTTATAAGTTC-GTTCCTTAAA-TA---AAGACGATCCATTCTTTC
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTC
* * * *
23037953 AAGCTATTTTCCGAACATTCCATGCTCAAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
131 GAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGT-AATT
* * * * * *
23038018 TTTTAATCAAATTTTGGTCTTTGATTTAAAAACTTATTTATGTGAGAATT
195 TTGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATT
23038068 TGATGTGAGC
Statistics
Matches: 1667, Mismatches: 247, Indels: 86
0.83 0.12 0.04
Matches are distributed among these distances:
412 7 0.00
413 90 0.05
414 1 0.00
417 1 0.00
418 3 0.00
419 7 0.00
420 153 0.09
421 91 0.05
422 1 0.00
423 1 0.00
424 45 0.03
427 68 0.04
428 39 0.02
429 1 0.00
430 4 0.00
431 116 0.07
432 263 0.16
433 452 0.27
434 320 0.19
435 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (432 bp):
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAACTTCCGAACTTG
TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACCATTCCTTC
GAGCAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAGTTTGTAATTT
TGTAAACAAGTTTTGGTCCTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTC
TTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTT
GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTT
Found at i:23037107 original size:649 final size:643
Alignment explanation
Indices: 23035685--23038067 Score: 2784
Period size: 649 Copynumber: 3.7 Consensus size: 643
23035675 GATCGTATCA
* * * *
23035685 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGACACACTTTCAAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTCGAACTTG
* *
23035750 TCAAACTGTCACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCGTC
66 TCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
23035815 GAGCAAATTTTC-AAAAATTCC-TCGCTCGGGAAGTCTCATCATTTGGTC---------TGTCGT
131 GAGC-AATTTTCTGAACATTCCAT-GCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTCAT
* * * * * * * **
23035869 TCTGTAAAAAAGTTTTGGTCTGTAAATTAAAAACTTATTTGCGTGAGAATTGTTTTTTTCCATGT
194 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGT
* **
23035934 TCTTGGACGAACTTCCAAACTCGTCAAACTTTTTTGAGTTCTATTTATAACTTCGGTTCCTTAAA
259 TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTAAA
* * * * **** *
23035999 GCATTCAAGACGATCCATTCCTTCGAGCAATTTGT-CAAACATTCCATGCTTTTAAAATTGCATC
323 GTATTCAAGACGATCCATTCCTTCAAGCAATTT-TCCGAACAATCCATGCTCGGGAAATCGCATC
* * *
23036063 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTAC
387 ATTTGGTCTAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTAC
23036128 GTGAGAATTGTTTCTCTCTTGGTTCTTG--G------AACTTGTCAAACTTTTACGAGTTCTTTT
452 GTGAGAATTGTTTCTCTCTTGGTTCTTGACGAACTTCAACTTGTCAAAC-TTTACGAGTTCTTTT
* * * * * * *
23036185 ATTAGTTCGATTCCTTAAAGTATTTAAGACAATCCATTT-CTTCCAGCAATTTTTTGAACATTCC
516 ATAAATTCGGTTCCTTAAAGTATTCAAGACGATCC-TTTCCTTCGAGCAATTTTTCGAACATTCC
* * * * *
23036249 ATGCTCGAAAAATCACATCAATTGGTCTAAATAG-TTGTCATTTTGTAAACAAGTTTTGGTCTTT
580 ATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAGTTTT-TTCTTT
*
23036313 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACGAACTTTCGAACTTG
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTCGAACTTG
* * * *
23036378 TCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTTAAGTATTAAAGACGATCCATTCCTTC
66 TCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * *
23036443 GAGCAATTGTCTGAACATTCCATGCTCGAAAAATCGCATCAATTGGTCTGAATATTTTGTCATTT
131 GAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTCATTT
* * *
23036508 TGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCTCTCTTTGTTT
196 TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTC
* * * * *
23036573 TTGGACGAACATCCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTCAAAGTA
261 TTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* *
23036638 TTCAAGACTAACCATTCCATT-AAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATCATT
326 TTCAAGACGATCCATTCC-TTCAAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATCATT
* * * *
23036702 TGGTTTAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCCTTGAATTAAAAAACTTATTTACAT
390 TGGTCTAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCTTTG-ATTTAAAAACTTATTTACGT
* *
23036767 GAGAATTGTTTCTCTCTTAGTTCTTGTACGAACTTCCAAACTTGACAAACTGTTACGAGTTCTTT
454 GAGAATTGTTTCTCTCTTGGTTCTTG-ACGAACTT-C-AACTTGTCAAACT-TTACGAGTTCTTT
* *
23036832 TATAAATTCGGTTCCTTAAAGTATTCAAGATGATCCTTTCCTTCGAGCAGTTTTTCGAACATTCC
515 TATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTTCGAACATTCC
*
23036897 ATGCTCGAGAAATCGCATCATTTAGCCTAAATAGTTTGTCATTTTGTAAACAAGTTATTTTCTTT
580 ATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAGTT-TTTTCTTT
** * *
23036962 GAATTAAAAACTTATTTACGTGCTAATTTTTTCCCTCTTGGTTATTGGACAAAC-TTCTGAACTT
1 GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTC-GAACTT
* * * * * * *
23037026 GTCAAACTGTTACGAGTTCGTTTAAAACTTCGGTTCCATAAAGCATTCAAGACGATACTTTCTTT
65 GTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * *
23037091 CGATCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTTGTCTAAATAGTTTT-TTAT
130 CGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA-TTTTGTCAT
* *
23037155 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTCGT
194 TTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGT
* * * *
23037220 TCTTGGATGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAG
259 TCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * * * * * *
23037285 TATTCAAGATGATCCATTCCTTCGAGTAATTTTTC-AAAAATTCCATGCTCGGGAAATTGCCTCT
324 TATTCAAGACGATCCATTCCTTCAAGCAATTTTCCGAACAA-TCCATGCTCGGGAAATCGCATCA
* *
23037349 TTTGGTCTAAATAGTTTGTCATTTTGTGAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTACG
388 TTTGGTCTAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTACG
* * * * *
23037414 TGAGAATTGTTTTGTCTTTTGGTTCTTGGACAAACTTCTGAACTTGTCAAACTTTGAAGAGTTTT
453 TGAGAATTG-TTTCTCTCTTGGTTCTT-GACGAACTTC--AACTTGTCAAACTTT-ACGAG-TTC
* ** * **
23037479 TTTTATAACTTTTGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTCCCGAACAT
512 TTTTATAAATTCGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTTCGAACAT
* * * * *
23037544 TCCATGCTTGGGAAATCGCATCATTTGGCCAAAATAGTTTTTCATTTTGTAAAGAAGTTTTTGTC
577 TCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAGTTTTT-TC
*
23037609 TGT
641 TTT
* * * * * * *
23037612 -ATATTAAAAACTTATTGATGTGAGAATTGTTTCTCTCCAT-GTTCTTGGACTAATTTTTGAACT
1 GA-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTATTGGACAAACTTTCGAACT
* * * * * *
23037675 TGTAAAACTTTTATGAGTTCTATTATAACTTCGGTTCCTTAAAAG-ATTCAAGACGACCCATTTC
64 TGTCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTT-AAAGTATTCAAGACGATCCATTCC
* * * * * *
23037739 TTCGAGCAATTTT-TCGAACATTTCTTGCACGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTC
128 TTCGAGCAATTTTCT-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTC
* * * * * ** *
23037803 ATTTTGTACACAAGTTTTTGTCTATCAATTAAAAACTTATTTACAAAAGAATTGTTTCTCTCTTG
192 ATTTTGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTT
* * * *
23037868 GTTCTTTGACAAACTTCCAAACTTGTCAAAATTTTACGAGTTCTTTTATAAGTTC-GTTCCTTAA
257 GTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * **
23037932 A-TA---AAGACGATCCATTCTTTCAAGCTATTTTCCGAACATTCCATGCTCAAGAAATCGCATC
322 AGTATTCAAGACGATCCATTCCTTCAAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATC
* * * *
23037993 ATTTGGTCTAAATAGTTTGTCATTTTTTTAATCAAATTTTGGTCTTTGATTTAAAAACTTATTTA
387 ATTTGGTCTAAATAGTTTGT-AATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTA
*
23038058 TGTGAGAATT
451 CGTGAGAATT
23038068 TGATGTGAGC
Statistics
Matches: 1492, Mismatches: 216, Indels: 76
0.84 0.12 0.04
Matches are distributed among these distances:
627 6 0.00
628 150 0.10
629 1 0.00
635 1 0.00
636 113 0.08
637 138 0.09
640 1 0.00
645 61 0.04
646 50 0.03
647 4 0.00
648 145 0.10
649 448 0.30
650 366 0.25
651 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (643 bp):
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTATTGGACAAACTTTCGAACTTG
TCAAACTGTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
GAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATATTTTGTCATTT
TGTAAAAAAGTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTTGTTC
TTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
TTCAAGACGATCCATTCCTTCAAGCAATTTTCCGAACAATCCATGCTCGGGAAATCGCATCATTT
GGTCTAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCTTTGATTTAAAAACTTATTTACGTGA
GAATTGTTTCTCTCTTGGTTCTTGACGAACTTCAACTTGTCAAACTTTACGAGTTCTTTTATAAA
TTCGGTTCCTTAAAGTATTCAAGACGATCCTTTCCTTCGAGCAATTTTTCGAACATTCCATGCTC
GAGAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAAGTTTTTTCTTT
Found at i:23038229 original size:11 final size:11
Alignment explanation
Indices: 23038202--23038232 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
23038192 TTTAAGGGCT
*
23038202 TTTTAATTTTA
1 TTTTAGTTTTA
23038213 TTTTAGTTTTA
1 TTTTAGTTTTA
23038224 TTTTAGTTT
1 TTTTAGTTT
23038233 AATAAGTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (11 bp):
TTTTAGTTTTA
Found at i:23038522 original size:50 final size:52
Alignment explanation
Indices: 23038468--23038565 Score: 137
Period size: 50 Copynumber: 1.9 Consensus size: 52
23038458 TAAGTAATGA
*
23038468 CATGCATTAAGGAACTTACATGTTAGTTAAA-TATGCATCA-TAAATCCTAT
1 CATGCATTAAGGAACTCACATGTTAGTTAAAGTATGCATCATTAAATCCTAT
* * * *
23038518 CATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCATCATTAAATC
1 CATGCATTAAGGAACTCACATGTTAGTTAAAGTATGCATCATTAAATC
23038566 AAGTCATGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 27 0.66
51 8 0.20
52 6 0.15
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (52 bp):
CATGCATTAAGGAACTCACATGTTAGTTAAAGTATGCATCATTAAATCCTAT
Found at i:23042301 original size:216 final size:217
Alignment explanation
Indices: 23041694--23043671 Score: 2319
Period size: 216 Copynumber: 9.2 Consensus size: 217
23041684 TAAAAACACA
* ** * *
23041694 AATTAAAAACTTATTTACCTGAGAATTGTTTCTCT-CTTCATTCTTGGACTAACTTTCGAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * *
23041758 TCAAATTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTT
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* *
23041823 GAGTAATTTTTCGAACATTCCATGCTCT-GGAAATCACATCATTTGGTCTAAATAGTTTGTCATT
131 GAGCAATTTTTCGAACATTCCATGCT-TGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
23041887 TTGTGAACAAGTTTTGGTCTTTG
195 TTGTAAACAAGTTTTGGTCTGTG
* * * * * *
23041910 ATTTAAAAACATATTTACGTGAGAATTGTTT-TGTCTTTTGGTTCTTCGACAAACTTCTGAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-CTTGGTTCTTGGACAAACTTCCGAACTT
* * * *
23041974 GTCAAACTTTGAAGAGTTTTTTTATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTT
65 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* *
23042039 CGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCAAAATAGTTTGTCATT
130 CGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
*
23042104 TTGTAAACAAGTTTTTGTCTGT-
195 TTGTAAACAAGTTTTGGTCTGTG
* * * * *
23042126 ATATTAAAAACTTATTGACGTGAGAATTGTTTCTCTCCAT-GTTCTTGGACGAATTTCCGAACTA
1 A-ATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTT
* * * * * *
23042190 ATCAAATTTTTACGAGTTCTATTATGACTTCGGTTCCTTAAAGGATTCAAGACGATCCATTTCTT
65 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
** * * * * *
23042255 TAAGCAATTTTTCGGACATTTCATGCTTTGGAAATCGCATCATTTGGTCTAAAAAGTTTTTCATT
130 CGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * *
23042320 CTGTACACAAGTTTTTGTCTGTC
195 TTGTAAACAAGTTTTGGTCTGTG
** * *
23042343 AATTAAAAACTTATTTACAAGAG-ATTGTTTCTCT-CTTGGTTCTTTGACAAACGTCCGAACTTG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * * *
23042406 TCAAAATTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAATATTAAAGATGATCCATTCTTTC
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * *
23042471 GAGCTATTTTCCGAACATTCCATGCTTGGGAAATCACATCATTTGGTCTATATAGTTTGTCATTT
131 GAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA-TT
* *
23042536 TTTTAAACAAGTTTTGGTCTTTG
195 TTGTAAACAAGTTTTGGTCTGTG
* * * * * *
23042559 ATTTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTCGGTTCTTGGACGAACTTCCAAACATC
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * *
23042623 ACAAACTTTGAAGAGTTCTTTTATAACTTCAGTTCCTTAAAGAATTCAAGACGATCCATTCCTTC
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* ** * * * **
23042688 AAGCAA-TTTTCTGAACATTCCATGCTTTTGAAATGGCATCATTTGGTCGAAA-AATTTGGTTTT
131 GAGCAATTTTTC-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTT-GTCAT
*
23042751 TTTGTAAACAAGTTTTTGTCTGTG
194 TTTGTAAACAAGTTTTGGTCTGTG
* * **
23042775 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAAA-TTCTGAGCAA
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGAC-AAACTTCCGAACTT
* *
23042838 GTCAAACTTTTACGACTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCCT
65 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * * * *
23042903 CGAGTAATTTTCCGAACATTCCATGCTCGAGAAATCGCATCAATTGGTCAAAATAGTTTGTCCTT
130 CGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
23042968 TTGTAAACAAGTTTTGGTATTTG
195 TTGTAAACAAGTTTTGGTCTGTG
** * * *
23042991 AATTAAAAACTTATTTACACGAGAATTGTTTCTC-ACTTGGTCCTTGGACAAAACTT-TGAACTT
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGAC-AAACTTCCGAACTT
* * * *
23043054 GTTAAACTTTTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGTTCCATTCCTC
65 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTT
* * * * *
23043119 CGAGCAATTTTTCGAGCATTCCATGCTCGTGAAGTCGTATCATTTGGTCTAAATAGTTTGTCATT
130 CGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* *
23043184 TTGTAAACAAGTTTTGGTATGTA
195 TTGTAAACAAGTTTTGGTCTGTG
* * * ** * *
23043207 AATTAAAAACTTATTTACATGAGAACTGTTTCTCTCCAT-GTTCTTATACAAACTTCCTAACTCG
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTTG
* * * * *
23043271 TCAAACTTTTATGAGTTCTATTATACCTTC-GTTCCTTAAAGCATTCAAGACAATCCATTCCTTC
66 TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
* * * * * *
23043335 GAGCAATTTTTCAAACATTTCATGCTCGGGAAATTGCATCAATTGGTCTAAATTGTTTGTCATTT
131 GAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
** *
23043400 TGTAAACAAAATTTGGTCTTTG
196 TGTAAACAAGTTTTGGTCTGTG
* * * *
23043422 TATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCTTGGATGAAA-TTCCGAACTC
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGA-CAAACTTCCGAACTT
* *
23043485 GTCAAACTTTTACAAGTTCTTTTATAACTTCAGTTCCTTAAAGTA-TCAAGAC-ATTCCATTCCT
65 GTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCT
* * * *
23043548 TCGAGCAA-TTGTCAGAGCATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCA
129 TCGAGCAATTTTTC-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCA
* *
23043612 TTTTGTAAACAA-CTTTGGACTGT-
193 TTTTGTAAACAAGTTTTGGTCTGTG
* * * *
23043635 AATTAAAAACTCATTTTCGTGAGAACTATTTCTCTCC
1 AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCC
23043672 ATGTTTGATG
Statistics
Matches: 1490, Mismatches: 248, Indels: 50
0.83 0.14 0.03
Matches are distributed among these distances:
213 29 0.02
214 18 0.01
215 400 0.27
216 713 0.48
217 327 0.22
218 3 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.40
Consensus pattern (217 bp):
AATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGACAAACTTCCGAACTTG
TCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC
GAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTT
TGTAAACAAGTTTTGGTCTGTG
Found at i:23047020 original size:50 final size:50
Alignment explanation
Indices: 23046941--23047064 Score: 142
Period size: 50 Copynumber: 2.4 Consensus size: 50
23046931 TTGATTTAAA
*
23046941 GATGCAAATTTTTAACTAACATGGGAGTTACATAATGCATGAT-AGGATTTAT
1 GATGCAAA--TTTAACTAACATGGAAGTTACATAATGCAT-ATCAGGATTTAT
* * * **
23046993 GATGCATATTTAACTAACATGTAAGTTACTTAATGCATATCATTATTTAT
1 GATGCAAATTTAACTAACATGGAAGTTACATAATGCATATCAGGATTTAT
*
23047043 GATGCAAACTTAACTAATCATG
1 GATGCAAATTTAACTAA-CATG
23047065 AGAGTTAATG
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
49 2 0.03
50 49 0.79
51 4 0.06
52 7 0.11
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (50 bp):
GATGCAAATTTAACTAACATGGAAGTTACATAATGCATATCAGGATTTAT
Found at i:23047297 original size:17 final size:17
Alignment explanation
Indices: 23047266--23047298 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23047256 CAAACACTTA
23047266 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
23047283 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
23047299 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:23048985 original size:50 final size:50
Alignment explanation
Indices: 23048907--23049045 Score: 147
Period size: 50 Copynumber: 2.7 Consensus size: 50
23048897 TGCATGACTT
*
23048907 GATTTAATGATGCAAACTTTTAACTAACATGGGAGTTACATAATGCGTGAT-AG
1 GATTT-ATGATGCAAA--TTTAACTAACATGAGAGTTACATAATGCGTG-TCAG
* * *
23048960 GATTTATGATGCATATTTAACTAACATGTA-AGTTACTTAATGCGTGTCAT
1 GATTTATGATGCAAATTTAACTAACATG-AGAGTTACATAATGCGTGTCAG
* * *
23049010 TATTTATGATGCAAACTTAACTGATCATGAGAGTTA
1 GATTTATGATGCAAATTTAACT-AACATGAGAGTTA
23049046 ATGGATGTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
49 1 0.01
50 49 0.66
51 10 0.14
52 9 0.12
53 5 0.07
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (50 bp):
GATTTATGATGCAAATTTAACTAACATGAGAGTTACATAATGCGTGTCAG
Found at i:23049273 original size:17 final size:17
Alignment explanation
Indices: 23049242--23049274 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
23049232 CAAACACTTA
23049242 TTAAACTAAAATAAAAC
1 TTAAACTAAAATAAAAC
23049259 TTAAA-TAAAATTAAAA
1 TTAAACTAAAA-TAAAA
23049275 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
TTAAACTAAAATAAAAC
Found at i:23051504 original size:20 final size:20
Alignment explanation
Indices: 23051476--23051535 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
23051466 TCTTAAGTTC
23051476 TTTTTCTCTCATTTCTTTT-
1 TTTTTCTCTCATTTCTTTTA
*
23051495 TTTCTTCTCTCAAATTCTTTTA
1 TTT-TTCTCTC-ATTTCTTTTA
*
23051517 TTTTTCACTCATTTTCTTT
1 TTTTTCTCTCA-TTTCTTT
23051536 CATTATCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.09
20 8 0.24
21 20 0.59
22 3 0.09
ACGTcount: A:0.12, C:0.22, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTCTCTCATTTCTTTTA
Found at i:23051561 original size:96 final size:96
Alignment explanation
Indices: 23051390--23051589 Score: 219
Period size: 96 Copynumber: 2.1 Consensus size: 96
23051380 TTCATTCACA
* * * *
23051390 ATTTCTTGTTTCCTTCTCTCTAACTCTTTGAATTTTCTCTCATTTTCTCTTATCAACAATTCTTC
1 ATTTCTTTTTTCCTTCTCTCAAACTCTTTGAATTTTCACTCATTTTCTCTTATCAACAACTCTTC
*
23051455 TCTCTTTTTTCTCTTAAG-TTCTTTTTCTCTC
66 TCTCTTTTTTCT-TTAAGCTTCCTTTTCTCTC
* * * * * *
23051486 ATTTCTTTTTTTCTTCTCTCAAATTCTTTTATTTTTCACTCATTTTCT-TTCATTATCAACTCTT
1 ATTTCTTTTTTCCTTCTCTCAAACTCTTTGAATTTTCACTCATTTTCTCTT-ATCAACAACTCTT
* **
23051550 GTCT-TTCTTTTCTTTTTGCTTCCTTTTCTCTC
65 CTCTCTT-TTTTCTTTAAGCTTCCTTTTCTCTC
23051582 A-TTCTTTT
1 ATTTCTTTT
23051590 GTTACAAGAT
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
95 14 0.16
96 73 0.84
ACGTcount: A:0.12, C:0.24, G:0.03, T:0.60
Consensus pattern (96 bp):
ATTTCTTTTTTCCTTCTCTCAAACTCTTTGAATTTTCACTCATTTTCTCTTATCAACAACTCTTC
TCTCTTTTTTCTTTAAGCTTCCTTTTCTCTC
Found at i:23054327 original size:216 final size:215
Alignment explanation
Indices: 23053932--23070519 Score: 15106
Period size: 216 Copynumber: 77.8 Consensus size: 215
23053922 TTGCATCAAT
* ** * * * *
23053932 GTTCATGGACGAACTTCCAAACTTATCAAACTTTTTCGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
23053997 AGTATTCAAGACGAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCTCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * *
23054062 ATCTGGTTTAACTAGTTTGTCATTTTGTAAACAATTTTTGGTTTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23054127 GTGAGAATTGTTTCTCTCTTA
195 GTGAGAATTGTTTCTCTCTTG
* ** * * * * * *
23054148 GTTATTGTTCGAACTTCTGAACTAG-AAAAATAGTTATGAGTTCTTTTATAACTTCGGTTCCTCA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACT-TTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * ** ** *
23054212 AATCATTCAAGACGATCCATTCCATCGAGAAATTTTTTGAACATTCCACACTCGATAAATCACAT
65 AAT-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23054277 CATTTGGACTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTTTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* *
23054342 CGTGAGAATTCTTTCTCTCTTT
194 CGTGAGAATTGTTTCTCTCTTG
* * * * * *
23054364 GAT-TTGGATGAACTT-TCGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCCTA
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * * *
23054427 AAGTATTGAAGACAAACCATTCCATCGAGAAATTTTTCGAACAATCCGTGCTCGGGAAATTGCAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23054492 CATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTCTGAATTAAAAACTTATTCA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * *
23054557 CATGAGAATCGTTTCACTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* ** * *
23054579 GTTCTTGGACGAACTTCTGTACTACTCAAACTTTTATGAGTT-TTTTATGACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* *
23054643 AGTATTCAAGACGATCCA-TCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23054707 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23054772 GTGAGAATTGTTTCTCACTTG
195 GTGAGAATTGTTTCTCTCTTG
* * *
23054793 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23054857 AAGTATTAAATAC-ATTCCATTCCTTTGAGCAATTTTT-GAGCATTCCATGCTCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * * *
23054920 TCATTTGATCAAAATAGTTTGTCATTTTGTAAACAAGTCTTGGTCTGTAAATTAAAAAATTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* *
23054985 ACGTGAGAACTGTTTCTCTCCAT-
193 ACGTGAGAATTGTTTCTCT-CTTG
* * ** * *
23055008 GTTATTGAACGAACCTT-TGAACTCATCAAACTTTTATGAGTTCTATTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAA-CTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * ** *
23055072 AAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGAAATTCTGTGCTCGGGAAATTGCA
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCA
* * * * *
23055136 TCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCGTGTATCAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* *
23055201 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* *
23055224 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
23055279 -A-GTTCAAGACGTTCCATTCCTTCGATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCACATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23055342 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTATAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23055407 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * * *
23055428 GTTCATGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * *
23055493 AGTATTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23055558 ATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCAGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23055623 GTGAGAATTATTT-TCCTCTTG
195 GTGAGAATTGTTTCT-CTCTTG
* * * * * * *
23055644 GTTCTCGGATGAACTTCTGTACTAGTCAAACTTTTATGAGTTTTTTTTATAACTT-TGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG-TTCTTTTATAACTTCGGTTCCTTA
* * * * *
23055708 TAGTATTCAAGATGATCCATTCCTTCGTGCAATTATTT-GAACATCCCATGCTTGGGAAATCGCA
65 -AATATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATCGCA
* * * *
23055772 TCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
23055837 ACGTGAGAATTGTTTCTCTCTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * *
23055860 GTCCTTGAACGAA-TTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTACAGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23055923 AAGTATTCAATAC-ATTCCATTCCTTTGAGCAATTTTTCGAGCAATCCATGCTCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
** * *
23055987 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGAAAATTTAAAAGTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * *
23056052 ATGTGAGAACTGTTTCTCTACAT-
193 ACGTGAGAATTGTTTCTCT-CTTG
* * * * * * * *
23056075 GTTCTGGGATGAACCTCCGAACTCGTCACACTTTTACGAGTTCTATGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
23056140 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATGCCATACTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * *
23056204 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAATA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* *
23056267 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
*
23056290 GTTCTTGGACGAAACTT-TGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACG-AACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
23056345 -A-ATTCAAGATGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23056408 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23056473 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * *
23056494 GTTCATGGACGAACTTCCGAACTCGTCAAACTTTTACGAGTT-TTATTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT-TTATAACTTCGGTTCCTTA
* * * * * * * *
23056558 AAGTATTGAAGACAAACCAATCCATGGAGCAATTTTTCGAACAATCCACGCTCGGGAAATCGCAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23056623 CATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAATTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
23056688 CGTGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * *
23056710 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * *
23056775 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCTCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * ** *
23056840 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGACTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
23056905 GTGAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* *
23056926 G-TCTTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT
1 GTTC-TTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * *
23056989 AAAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGT
64 AAA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGC
* * * *
23057053 ATCATTTGGTCTAAACAGTTTGTCATTATGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
* * *
23057118 TATGTGAGAACTGTTTCTCTCCAT-
192 TACGTGAGAATTGTTTCTCT-CTTG
* * * ** * *
23057142 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTATGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23057207 AGCATTTAAGACGATCCATTGCTTCGAGCAATTTTTCAAATATTCCATGGTCGGGAAATTGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23057272 AATTGGTCCAAATAGTTTGTCATTTTATAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTA
*
23057335 TGTGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * **
23057357 GTTCTTGGATGAAATT-TCGAACTTGTCAAACTGTTAAGAGTTCTTTTATAACTTTAG-T--TTA
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23057418 AGATGTT---G-C--T---TTCCTTCAATCAGTTTTTCGAGCATTCCATGCTCGGGAAGTCGCAT
65 A-ATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23057474 TATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23057539 CGTGAGAATTGTTTCTCTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * * *
23057561 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * * * *
23057626 AGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGAAAAATCTATGCTCAGGAAATCACATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23057691 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTCAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
23057756 GTGAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * * * * * * * * *
23057777 GTTCTTGAAAGAAATTCAGTACTAGTCAAGCTTTCAAGAGTTTTTTTGTAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * ** *
23057842 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTAGGAAATCTCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23057907 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACATATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
23057972 GTGAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
** * *
23057993 GCCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23058057 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCCCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * **
23058121 TCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAGGTTTTGGTCTGAAAATTTAAAAA-TTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTATT
* * *
23058185 TATGTGAGAACTGTTTCTCTCCAT-
192 TACGTGAGAATTGTTTCTCT-CTTG
* * * * * * * *
23058209 GTTCTTGGACAAACCTCCGAACTCGTCACACTTTTACGAGTTCTATAATAACTCCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * *
23058274 AGCATTCAAGACGATCCATTCCTTCGAGTAATTTTTC-AGACATGCCATGCTCAGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23058338 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAATA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* *
23058401 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* *
23058424 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * * * *
23058479 -A-GTTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTGGGGAAGTCACATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23058542 ATTTGGTCTAAATAGTTTGTCATTTTCTACAGAAGTTTTGGTCTGT-AAGTTAAAAACTTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTATTTA
*
23058606 CGTGAGAATTGTTTCTCTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * * *
23058628 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23058693 AGTATTAAAGACAAACCAATCCATCGAGCAATTTTTCGAACAATCCATGATCGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23058758 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23058823 GTGAGAATTGTTTCTCCCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * * * * * *
23058844 GTTCTTGAACGAACTTCTGTACTAGTCAAACCTTTAAGAGTTTTTTTATAACTTCGG-TCCCTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* ** * *
23058908 GTATTCAAGACGATCCATTCCTTTAAGCAATTTTTCGAACATTCCATGCTTGGGAAATCTCATCA
66 ATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* * * * *
23058973 ATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAAG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
23059038 TGAGAATTGTTTCTCTCTTG
196 TGAGAATTGTTTCTCTCTTG
* * * * *
23059058 GTCCTTGGACGAAATTCCT-TAGTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * ***
23059122 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTCGGGAAGTTATA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* *
23059186 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * *
23059251 ATGTGAGAACTATTTCTCTCCAT-
193 ACGTGAGAATTGTTTCTCT-CTTG
* * * ** ***
23059274 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTGCGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23059339 AGCATTCAAAACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23059403 CAATTGGTCGAAATAGTTTGTAATTTTGTAAACAAGTTTTGGACCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-TCTGTGAATTAAAAACTTATTT
* *
23059466 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* *
23059489 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
23059544 -A-ATTCAAGACGTTCCATTCCTTCAATCAATTTTTCGAGCATTCCATGCTCAGGAAGTCGAATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23059607 ATTTGGTCTAAATAGTTTGTCATTTGGTACACAAGTTTTGGTCTGTAAATTAAAAACTCATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23059672 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * *
23059693 GTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23059758 AGTATTGAAGACAAACAATTCCATT-GAGCAACTTTTCGAATAATCCATGCTCGGGAAATCGCAT
66 A-TATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23059822 CATTTGGTTTAAATAGTTTGTAATTTTGTAAACAAGTTTTTGTATGTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
23059887 CGTGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * *
23059909 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * *
23059974 AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTTGGGAAATCGTAT
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23060038 CAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTCAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23060103 CGTGAGAATTGTTTCTCACTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * *
23060125 GTCCTTGGATGAAATTCCT-AACTTGTCTAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23060189 AAGTATTCAATG-C-ATTCCATTCCTACGGGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGT
65 AA-TATTCAA-GACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGC
* *
23060252 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAAATTATT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
* * * *
23060317 TATGTGAGAACTGTTTCTCACCAT-
192 TACGTGAGAATTGTTTCTC-TCTTG
* * *
23060341 GTTCTTGGACGAACCTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * *
23060406 AGCATTCAAGACGATCCATTCCTTCGACCAATTTTTTAGAA-ATTCCATGCTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23060470 CAATTGGTCCAAATAGTTTGTCATTTTGTAAAGAAGTTTTGGTCCT-TGTATCAAAAACTTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * *
23060534 ATGTGAGAATTGTTTCTCACTTC
193 ACGTGAGAATTGTTTCTCTCTTG
* * * * *
23060557 GTTCTTGGACGAAATT-TCAAACTTGTCAAACTGTTAAGAGTTTTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23060612 -A-GTTCAAGACGTTCCATTCCTTCGATCAATTTTTCGAGCATTCCATACTCGGGAAGTCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23060675 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTATAAACTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* *
23060740 GTGAGAATTGTTTCTGTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * *
23060761 GTTCATGGACGAACTT-TCGAACTAGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * ** *
23060825 AAGTATTGAAGACAAACCATTCCATCGAGAAATTTTTCGAGTAATCCATGCTCGGGAAATCGCAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* *
23060890 CATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * *
23060955 CGTGAGAATTGATTCTTTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * * * * * * *
23060977 GTTCATGGACGAACTTCCGAACTCGTAAAACTGTTACGAGTTCTATTATAACATCGATTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * *
23061042 AGTATTGAAGACGATCCATTCCTTCGAGCAACTTTACCAACATTGCATGCTTGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * ** * *
23061107 AATTGGTCAAAATAGTTTGTTGTTTTGTAAACAAGATTTGGTCT-TAGAATTAAAACCTTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGT-GAATTAAAAACTTATTTA
*
23061171 CGTGAGAATTGTTTCTCACTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * *
23061193 GTCCTTGGATGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * *
23061257 AAGTAGTCAATACG-TACCATTCCTTCGAGCAA-TTTTCCAAGCATTCCATGCTCGGGAAGTCGT
65 AA-TATTCAAGACGAT-CCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGC
* *
23061320 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTTTGTAAATTAAAAACTTATT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
* * *
23061385 TATGTGAGAACTGTTTCTCTCCAT-
192 TACGTGAGAATTGTTTCTCT-CTTG
* * * ** *** *
23061409 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGATTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23061474 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTCGGAAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23061538 CAATTGGTCCAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATCT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * *
23061601 ATGTGCGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* *
23061624 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
23061679 -A-GTTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23061742 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGATCTGTAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23061807 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * * *
23061828 GTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTATTATAACATGGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23061893 AGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGAACAATCCATGTTCGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23061958 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
23062023 GTGAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * * * *
23062044 GATCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * * * * *
23062109 AGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCGTGCTTGGTAAATCTCATA
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23062174 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAATTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23062239 GTAAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * * *
23062260 GTCCTTGGACGAAATTCCT-TAGTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23062324 AAGTATTTAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
**
23062388 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGAAAATTTAAAAA-TTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTATT
** * *
23062452 TATTTGAGAACTGTTTCTCTCCAT-
192 TACGTGAGAATTGTTTCTCT-CTTG
* * ***
23062476 GTTCTTGGACGAACCTCTGAACTTGTCACACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23062541 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATGCCATGCTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23062605 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * *
23062668 ATGTGCGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * * *
23062691 GTTCTTTGACGAAATT-TCAAACCTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * ** * * * *
23062746 -A-GTTCAAGACGTTCCATTCCTTC-AATAAATTTTCTGAGCATTCCATGCTCGGGAAGTCACAT
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCAT
* *
23062808 CATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23062873 CGTGAGAATTGTTTCTCTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * * *
23062895 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTATGAGTTCTATTATAACATT-GGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTTA
* * * *
23062959 AAGTATT------G---CA-----TCGAGCAATTTTTCGAATAATCCATGCTCGAGAAATAGCAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23063010 CATTTGGTTTAAATAATTTGTCATTTTGTACACAAGTTTTTGTCTATGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
23063075 CGTGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * *
23063097 GTTCCTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTT-TCTTTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTA
* * * * * *
23063161 TAGTAGTCAAGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCAT
65 -AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23063226 TAATTGGTCAAAATAGTTTGTCATTTTGTAAATAAGATTTGGTCTTTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
23063291 CGTGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * *
23063313 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * *
23063377 AAGTATTCAATAC-ATTCCATTCCTTCGAGTAATTTTTCGAGCATTCCATGCTCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
*
23063441 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * *
23063506 ATGTGAGAACTGTTTCTCTCCAT-
193 ACGTGAGAATTGTTTCTCT-CTTG
* * * ** * ***
23063529 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACAAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23063594 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGGTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * *
23063658 CAATTGGTCGAAATAGTTTGTCATTTTGTAAATAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * *
23063721 ATGTGAGAAGTATTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * *
23063744 GTTCTTGGACGAAATTTTGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23063799 A-GTTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATCA
66 ATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* *
23063863 TTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
*
23063928 TGAGAATTGTTTCTCTCGATG
196 TGAGAATTGTTTCTCTC-TTG
* * * * * *
23063949 G-TCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTGTAACATCGGTTCTTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * *
23064013 ATTATTGAAGACAAACCAATCCATCGAGTAATTTTTCGAACAATCCATGCTCGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23064078 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23064143 GTGCGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * * * * *
23064164 GTTCTTGAACTAACTTCTGTACTAGTCAAACTTTTATGA-TTTTTTTATAACTTCGATTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * *
23064228 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* ** * *
23064293 AATTGGTAAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23064358 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * *
23064379 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * * * *
23064444 AGTATTGAAGACAAACCAATCCATCGAGTAATTTTTTGAACAATCCATGCTCGGGAAATCGCATC
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
*
23064509 ATTTGGT-TAAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTA
130 ATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23064573 CATGAGAATTGTTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * * * * *
23064595 GTTCTTGAACGAACTTTTGTACTAGTCAAACTTTTAAGA-TTTTTTTATAACATCGATTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * *
23064659 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * * *
23064724 AATTGGTCAAAATAGTTTGTTATTTTGTAAACAAGATTTGGTCTTTGAATTAAACACTTATTTAT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
23064789 GTGAGAATTGTTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * * *
23064810 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCTTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23064874 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAAATTTTCGAGCATTCCATGCTCAGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* *
23064938 TCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * *
23065003 ATGTGAGAACTGTTTCTCTCCAT-
193 ACGTGAGAATTGTTTCTCT-CTTG
* * * ** ***
23065026 GTT-TTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23065090 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTAGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23065154 CAATTGGTCCAAGTAGTTTGTCATTTTGTAAACAAGTTTTTGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* *
23065217 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * *
23065240 GTTCTTGGATGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCAGTTCCTTT
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TT
* * * * * * * *
23065304 AAGTATTCAAGCCGTTCCCTTCCTTCGAGCAA-TTTTCCAAGCATTCCATGCTTGAGAAATCTCA
64 AAATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCA
* * * * *
23065368 TCAATTAGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
*
23065433 ACGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * *
23065456 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * * *
23065520 AAGTATTCAATAC-ATTCGATACCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTA
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * *
23065584 TCATATGGTCTAAATAGTTTGTCATTTTGTAAACAAGTGTTGGTCCT-TGTATCAAAAACTTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATT
* *
23065648 TATGTGAGAATTGTTTCTCACTTG
192 TACGTGAGAATTGTTTCTCTCTTG
* * *
23065672 GTTCTTGGACGAAATT-TCGAACTTGTGAAACTTTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23065727 -A-GTTCAAGACGTTCCATTCCTTCAATCAATTTTT-GAGCATTCCATGCTCGGGAAGTCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23065789 ATTTGGTCCAAATAGTTTGTCATTTTGTACACCAGTTTTGGTCTATAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23065854 GTGAGAATTGTTTCTCTCCAT-
195 GTGAGAATTGTTTCTCT-CTTG
* * * * * * * *
23065875 GTTCATGGATGAACTTCCGAACTAGTCAAACTTTTAC-AGGTTCTATTATAACATCAGCTCCTTA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGA-GTTCTTTTATAACTTCGGTTCCTTA
* * * * *
23065939 AAGTATTGAAGACAAACCATTCCATCGAGCAGTTTTTCGAACA----AT-C-C-----AT-G---
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * ** * *
23065989 C--TTGGTATAAATAGTTTGTCATTTTGT-AAACA-AGTTTTT-GTCTGCGAATTAAAAACTAAT
129 CATTTGGTCTAAATAGTTTGTCA-TTT-TGTAA-ACAAGTTTTGGTCTGTGAATTAAAAACTTAT
* * *
23066049 TTACGTGAGAATTATTTCTTTCCAT-
191 TTACGTGAGAATTGTTTCTCT-CTTG
* * * * *
23066074 GTTCATGGATGAACTT-TCGAACTCGTCAAACATTTACGAGTTCTATTATAACATT-GGTTCCTT
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGGTTCCTT
* * *
23066137 AAAGTATTGAAGACGATCCATTCCTTCGAGCAATTTTACGAACATTCCATGCTTGGGAAATCGCA
64 AAA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * * * *
23066202 TCAATTGGTCAAAATAGTTTGTTATTTTGTAAATAAGATTTGGTCTTTGAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
*
23066267 ACGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* *
23066290 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TCTGGTTCCTT
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GGTTCCTT
* * * * * * *
23066353 AAAGTATTCAATACGTTCCATTCCTTCGAGTAA-TTTTCCAAGCATTCTATGC-CTAGGAAGTCG
64 AAA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTC-GGGAAATCG
* * * * * *
23066416 TATCATTCGGTCTAAACAGTTTGTCTTTTTGTAAACGAGTTTTGGTCTGTAAATTAAAAACTTAT
126 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTAT
* * *
23066481 TTATGTGAGAACTGTTTCTCTCCAT-
191 TTACGTGAGAATTGTTTCTCT-CTTG
* * * ** ***
23066506 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * *
23066571 AGCATTCAAGACGATCCATTCCGTCGAGC-ATTTTTC-AGACATTCCATGCTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23066634 TAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-T-ATATTTAAAA-TTATT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGA-ATTAAAAACTTATT
*
23066696 TATC-TGAGAATTGTTTCTCACTTG
192 TA-CGTGAGAATTGTTTCTCTCTTG
* * **
23066720 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTAGTTCCTTT
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TT
* * * * *** * * *
23066784 AAGTATTCAAG-CTGTTCCCTTCCTTCGAGCAATTTTTCGAGCATTGTTTGGTC--TAAATAGTT
64 AAATATTCAAGAC-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG--
** * ** * * *
23066846 TGTCATTTTGTAC-CCA-AGTTTTGGTC-TGTAAAT-TAAA-AACTTATT--TACGTGAGAATT-
126 CATCATTTGGT-CTAAATAG-TTT-GTCAT-T--TTGTAAACAAGTT-TTGGT-C-TGTGAATTA
**** * * * * *
23066903 GTTTCTCTCCATGTT-CATGGACGAA--CTTTCGAACTCATC
182 AAAACT-T--AT-TTACGT-GA-GAATTGTTTC--TCTCTTG
*** ** * * * * * * *****
23066942 AAACTTTTACG-AGTTCT--A-TTAT--AAC--AT-CG-GTTC-CTTA-AAGTAT-TG-AAGAGA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TCGGTTCCTTA
* * * * ** ** *
23066993 AACTATTCCA-TCGAGT-AATT-TTTCGAATAATCCATGCTCGGGAA-A-TCGCAT-CATTTGGT
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAAT---TTTTC--GAACATTC-CATGC--TCGG-
* * ** * * * ** * **
23067052 TTAAATAGTTTGTCATTTTGT-AAAAAAGTTT-TTGTTTGTGAATTAAA-AACTTATT-CACATG
119 -GAAATCG--CATCATTTGGTCTAAATAGTTTGTCATTT-TG---TAAACAAGTT-TTGGTC-TG
* **** * * * * **
23067113 AGAATT-GTTTCTCTCTTGGTTC-T-TGAA-CG-AACT-TC-T-
175 TGAATTAAAAACT-TATT--TACGTGAGAATTGTTTCTCTCTTG
* * * * * ** * * * * *
23067149 GTAC-TAGTCAAACTTTTAAGAGTTTTTCTATAACTTCGGTT-CCA-TATAGCATTCA-AGACGA
1 GTTCTTGGACGAACTTCT--GAACTTGTC-A-AACTT---TTACGAGT-T--CTTTTATA-AC-T
** * * * * * * * *
23067210 TCCATTCCTTCGAGCAATTTTCGA-AC-ATTCCA-TGCTT-G-GGAA-ATCTC-ATCAAT---TG
54 TCGGTTCCTT--A--AATATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
* * * ** * *
23067265 GTC--AAAATTGTTTGTCATATT-G--TAAACAAGATTTGGTC--TTTGAATTAAA-AACTTATT
114 CTCGGGAAATCG--CATCAT-TTGGTCTAAA-TAG-TTT-GTCATTTTG---TAAACAAGTT-TT
* **** * * * * * **
23067322 --TACGTGAGAATT-GTTTCTCTCTTGGTCCTTGGACGAA--ATTCCTAACTT-
169 GGT-C-TGTGAATTAAAAACT-TATT--TACGT-GA-GAATTGTTTCTCTCTTG
* * * * * **** * * * ** **
23067370 GTCAAACCTT-TACGAGTTCTTTTATAACTT-TGGTTC-CTTA-AAG-TATTCAAT-ACATTCCA
1 GT----TCTTGGACGA--ACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TTCGG
* * * * * *
23067429 TTCCTTCGAGCACAT-TTC-CGA-GCATTCCA-TGC-TCG-GGAA---GTCGTATCATT---TGG
58 TTCCTT--A--A-ATATTCAAGACG-A-TCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGC
* * ** * * * *
23067482 TC--TAAATAGTTTGTCATTT--TGTAAACA-------AGTTT-T-----------GGTCTGTAA
115 TCGGGAAATCG--CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGA
** * *
23067524 ATTAAAAACTTATTTATATGAGAACTGTTTCTCTCCAT-
178 ATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTG
* * * ** * ***
23067562 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACAAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * *
23067627 AGCATTCAAGACGATCCATTCGTTCGAGC-ATTTTTCAAACATTCCATGCTCGGGAAATTGCATT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23067691 AATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTA
* *
23067754 TGTGAGAATTGTTTCTCACTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * *
23067776 ATTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCAGTTCCTTT
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC-TT
* * * * * * * *
23067840 AAGTATTCAAGCCGTTCCCTTCCTTCGAGCAATTTTTCGAGCATTCCATACTTGGGAAGTCGCAT
64 AAATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23067905 CATTTGGTCTAAATAGTTTGTCATTTTTTATACAAGTTTTGGACTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23067970 CGTGAGAATTGTTTCTCTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * * * * *
23067992 GTT-TATGGACTAACTT-TCAAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGATTCCTT
1 GTTCT-TGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * * *
23068055 AAAGTATTAAAGA-GAAACCATTCCATCGAGCAATTTTTCGAATAATCCATGCTCGAGAAATCAC
64 AAA-TATTCAAGACG-ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGC
* *
23068119 ATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
23068184 TACGTGAGAATTGTTTCTCTCTTG
192 TACGTGAGAATTGTTTCTCTCTTG
* * * * *
23068208 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * * * * *
23068273 AGTATTGAAGACAATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGAAAATCTCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23068338 AATTGGTCAAAATAGTTTGTCATTTTTTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23068403 GTGAGAATTATTTCTCTCTTG
195 GTGAGAATTGTTTCTCTCTTG
* * *
23068424 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* *
23068488 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTC-GGAAAGTCGC
65 AA-TATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA-TCGC
* * **
23068551 ATC-TTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGTATGAAAATTTAAAAA-TTAT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTAT
* * * *
23068614 TTATGTGAGAACTGTTTCTCACCAT-
191 TTACGTGAGAATTGTTTCTC-TCTTG
* * * * *
23068639 GTTCTTGGACGAACCTCTGAACTCGTCATACTTTTACGAGTTCTATGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * *
23068704 AGCATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCCAGACATGCCATGCTCGGGAAATTGCAT
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23068768 CAATTGGTCCAAATAGTTTGTCA-TTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* *
23068830 ATGTGAGAATTGTTTCTCACTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * *
23068853 GGTCTTGGACGAAATTTTGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * *
23068908 A-GTTCAAGACGTTCCATTCCTTCGATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATCA
66 ATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* * *
23068972 TTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTATAAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
* *
23069037 TGAGAATTGTTTCACTCCAT-
196 TGAGAATTGTTTCTCT-CTTG
* * * * * * *
23069057 GTTCATAGACGAACTT-TCGAACTCGTCAAACTTTTATGAGTTCTATTATAACATCGGTTCTTTA
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23069121 AAGTATTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGAGAAATCGCAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23069186 CATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTGTTT-GTCTATGAATTAAAAACTTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTGGTCTGTGAATTAAAAACTTATTT
**
23069250 ACGTGAGAATTACTTCTCTCTTG
193 ACGTGAGAATTGTTTCTCTCTTG
* * * * * * * * *
23069273 GTTCTCGGATGAACTTTTGTACTAGTCAAACTTTTATGAATTTTTTTATAACTTCTGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * * * *
23069338 AGTATTCAAGATGATCCATTCCTTCGTGCAATTTTTTGAACATTCCATTCTTGGGAAATCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23069403 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23069468 GTGAGAATTGTTTCTCACTTG
195 GTGAGAATTGTTTCTCTCTTG
* * *
23069489 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23069553 AAGTATTCAATATGTTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTCGGGAAGTCGTAT
65 AA-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23069618 CATTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTATAAATTAAAAAATTATGTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23069683 CGTGAGAATTGTTTCTCTCCAT-
194 CGTGAGAATTGTTTCTCT-CTTG
* * ** *
23069705 GTTCTTGGATGAACCTCTGAACTCATCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* *
23069770 AGCATTCAAGACGATCCATTCCTTCGAGCAAATTTTCAGAA-ATTCCATGCTCGGGAAA-CTGCA
66 A-TATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC-GCA
* * *
23069833 TCAGTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAAAACTTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATT
* *
23069897 TATGTGAGAATTGTTTCTCACTTG
192 TACGTGAGAATTGTTTCTCTCTTG
* * * * *
23069921 GTTCTTGGATGAAATT-TCGATCTTGTCAAACTGTTAAGAGTTCTTTTATAA---C--TT-C---
1 GTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * *
23069976 -A-GTTCAAGACGTTCCATTCC-TCGATCAATTTTTCGAGCATTCCATGCTTGGGAAATCGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23070038 ATTTGGTTTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTGAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* *
23070103 GTGAGAATTGTTTCTCCCAT-
195 GTGAGAATTGTTTCTCTCTTG
* * * * * * *
23070123 GTTCATAGACGAACTTCCGAACTCGTCAAACTTTTAGGAGTTCTGTTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
* * * * * *
23070188 AGTATTGAAGACAAACCATTCCATT-GAGCAATTTTTCGAACAATCCATGCTCGAGAAATTGCAT
66 A-TATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23070252 CATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTTTGTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
*
23070317 CGTGAGAATTATTTCTCTCTTG
194 CGTGAGAATTGTTTCTCTCTTG
* * * * *
23070339 GTTCTCGGACGAACTTCTGTACTAGTCAAACTTTTACGAGTTTTTTTATAACTTCTGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA-
* * * * *
23070404 AGTATTCAAGACGATCCATTCCTTTGTGCAATTTTTCGAACATTCCATGCTTGGGAAATTGCATC
65 AATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23070469 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATT
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATT
23070520 TGATGTCAAA
Statistics
Matches: 13345, Mismatches: 2371, Indels: 1312
0.78 0.14 0.08
Matches are distributed among these distances:
185 1 0.00
186 5 0.00
187 11 0.00
188 11 0.00
189 14 0.00
190 17 0.00
191 13 0.00
192 6 0.00
193 9 0.00
194 11 0.00
195 1 0.00
196 10 0.00
199 149 0.01
200 10 0.00
201 8 0.00
202 294 0.02
203 949 0.07
204 897 0.07
205 35 0.00
206 9 0.00
207 32 0.00
208 14 0.00
209 38 0.00
210 36 0.00
211 20 0.00
212 30 0.00
213 23 0.00
214 697 0.05
215 2389 0.18
216 7351 0.55
217 153 0.01
218 10 0.00
219 11 0.00
220 9 0.00
221 13 0.00
222 15 0.00
223 2 0.00
224 2 0.00
225 10 0.00
226 7 0.00
227 5 0.00
229 2 0.00
230 5 0.00
231 9 0.00
232 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (215 bp):
GTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
ATATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTG
Found at i:23055890 original size:851 final size:856
Alignment explanation
Indices: 23053932--23070519 Score: 17028
Period size: 851 Copynumber: 19.5 Consensus size: 856
23053922 TTGCATCAAT
* ** * * *
23053932 GTTCATGGACGAACTTCCAAACTTA-TCAAACTTTTTCGAGTTCTATTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAAC-TAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* * * *
23053996 AAGTATTCAAGACGAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCTCAT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23054061 C-ATCTGGTTTAACTAGTTTGTCATTTTGTAAACAATTTTTGGTTTTTGAATTAAAAACTTATTT
129 CAAT-TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * ** * * * * *
23054125 ACGTGAGAATTGTTTCTCTCTTAGTTATTGTTCGAACTT-CTGAACTAG-AAAAATAGTTATGAG
193 ACGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCT-AACTCGTCAAACT-TTTACGAG
* * *
23054188 TTCTTTTATAACTTCGGTTCCTCAAA-TCATTCAAGACGATCCATTCCATCGAGAAATTTTTTGA
255 TTCTTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGA
** ** * *
23054252 -ACATTCCACACTCGATAAATCACATCATTTGGACTAAATAGTTTGTCATTTTGTAAACAAGTTT
318 GACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * * * *
23054316 TTGTCTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCTCTTTGAT-TTGGATGAACTTT
383 TGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTT
* * * * *
23054380 CGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCCTAAAGTATTGAAGACAAACC
448 CGAACTTGTCAAACTTTTACGAGTTCTTTTAT-A-ATC-GTT-CCT--AG-ATTCAAGACGATCC
* * * * * * * *
23054445 ATTCCATCGAGAAATTTTTCGAACAATCCGTGCTCGGGAAATTGCATCATTTGGTTTAAATAGTT
506 ATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * * * * *
23054510 TGTCATTTTGTAAACAAGTTTTTGTCTCTGAATTAAAAACTTATTCACATGAGAATCGTTTCACT
571 TGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * ** * *
23054575 -CTTGGTTCTTGGACGAACTTCTGTACTACTCAAACTTTTATGAGTT-TTTTATGACTTCGGTTC
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* *
23054638 CTTATAGTATTCAAGACGATCCA-TCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATC
701 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
23054702 GCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTA
766 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTA
*
23054767 TTTACGTGAGAATTGTTTCTCACTTG
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * * *
23054793 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* * * * * *
23054857 AAGTATTAAATAC-ATTCCATTCCTTTGAGCAATTTTT-GAGCATTCCATGCTCGGGAAGTCGTA
64 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * * * *
23054920 TCATTTGATCAAAATAGTTTGTCATTTTGTAAACAAGTCTTGGTCTGTAAATTAAAAAATTATTT
128 TCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * *
23054985 ACGTGAGAACTGTTTCTCTCCATGTTATTGAACGAACCTT--TGAACTCATCAAACTTTTATGAG
193 ACGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAA-CTTCCT-AACTCGTCAAACTTTTACGAG
* *
23055048 TTCTATTATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGA
255 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGA
* ** * * *
23055113 AATTCTGTGCTCGGGAAATTGCATCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTG
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
23055178 GTCCGTGTATCAAAAACTTATTTATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCG
385 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCG
* *
23055243 AACTTGTCAAACTTTTAAGAGTTCTTTTATAA-C-TT-C-AG-TTCAAGACGTTCCATTCCTTCG
450 AACTTGTCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTTCG
* * *
23055303 ATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTT
515 AGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTT
* * * *
23055368 GTACACAAGTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-GTTC
580 GTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTC
* * * *
23055432 ATGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAAAGTA
645 TTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTA
* * * * * *
23055497 TTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATCT
710 TTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
* * *
23055562 GGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCAGTGAATTAAAAACTTATTTACGTGA
775 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGA
*
23055627 GAATTATTT-TCCTCTTG
840 GAATTGTTTCT-CTCTTG
* * * * * * *
23055644 GTTCTCGGATGAACTTCTGTACTAGTCAAACTTTTATGAGTTTTTTTTATAACTTTGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAG-TTCTTTTATAACTTGGTTCCTTAA
* * * *
23055709 AGTATTCAAGATGATCCATTCCTTCGTGCAATTATTT-GAACATCCCATGCTTGGGAAATCGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23055773 CAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTA
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * *
23055838 CGTGAGAATTGTTTCTCTCTTGGTCCTTGAACGAA-TTCCTAACTTGTCAAACTTTTACGAGTTC
194 CGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTC
* * * *
23055902 TTTTATAACTACAGTTCCTTAAAGTATTCAATAC-ATTCCATTCCTTTGAGCAATTTTTCGAG-C
258 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTT-GAGAC
* * *
23055965 AATCCATGCTCGGGAAGTCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
321 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
** * * * * * * * ** *
23056030 TCTGAAAATTTAAAAGTTATTTATGTGAGAACTGTTTCTCTACAT-GTTCTGGGATGAACCTCCG
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCTTGGACGAAATTTCG
* * * *
23056094 AACTCGTCACACTTTTACGAGTTCTATGATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCAT
450 AACTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC-T--AG-ATTCAAGACGATCCAT
* * * * * *
23056159 TCCTTCGAGCAATTTTTC-AGACATGCCATACTCGGGAAATTGCATCAATTGGTCCAAATAGTTT
508 TCCTTCGAGCAATTTTCCGAG-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
23056223 GTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAATA-TTATTTATGTGAGAATTGTTTCTC-
572 GTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * *
23056285 ACTTGGTTCTTGGACGAAACTT-TGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT
636 CCTTGGTTCTTGGACG-AACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * * * * * *
23056344 -C----A--ATTCAAGATGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGT
700 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAAT
* *
23056402 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTT
765 CGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTT
*
23056467 ATTTACGTGAGAATTGTTTCTCTCCAT-
830 ATTTACGTGAGAATTGTTTCTCT-CTTG
* * * *
23056494 GTTCATGGACGAACTTCCGAACTCGTCAAACTTTTACGAGTT-TTATTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTT-TTATAAC-TTGGTTCCTTA
* * * * * * * *
23056558 AAGTATTGAAGACAAACCAATCCATGGAGCAATTTTTCGAACAATCCACGCTCGGGAAATCGCAT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23056623 CATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAATTTATTTA
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * *
23056688 CGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTT-CTGTACTAGTCAAACTTTTAAGAGTT
194 CGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCT-AACTCGTCAAACTTTTACGAGTT
* *
23056752 TTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-AC
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGAC
* * * * **
23056816 ATTCCATGCTTGGGAAATCTCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGACTTGG
321 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
23056881 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGG-TCTTTGGACGAAATTCCT
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTC-TTGGACGAAATTTCG
* *
23056945 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAATAC-ATTCCA
450 AACTTGTCAAACTTTTACGAGTTCTTTTATAA---TCGTTCC-T--AG-ATTCAAGACGA-TCCA
* * *
23057009 TTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTATCATTTGGTCTAAACAGTTT
507 TTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * * *
23057074 GTCATTATGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTC
572 GTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC
* * * ** * *
23057139 CAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTATGATAACTTCGGTTCC
637 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
23057203 TTAAAGCATTTAAGACGATCCATTGCTTCGAGCAATTTTTCAAATATTCCATGGTCGGGAAATTG
702 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * *
23057268 CATCAATTGGTCCAAATAGTTTGTCATTTTATAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTA
767 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTA
*
23057331 TTTATGTGAGAATTGTTTCTCTCTTG
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * * * *
23057357 GTTCTTGGATGAAATT-TCGAACTTGTCAAACTGTTAAGAGTTCTTTTATAAC-----T--TT--
1 GTTCTTGGACGAACTTCT-GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAA
* * * * * * * * * *
23057412 AGT-TT-AAGATGTTGCTTTCCTTCAATCAGTTTTTCGAGCATTCCATGCTCGGGAAGTCGCATT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23057475 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTAC
130 AATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23057540 GTGAGAATTGTTTCTCTCCATGTTCATGGACGAACTT-CTGAACTCGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCT-AACTCGTCAAACTTTTACGAGTTC
* * * * * * * *
23057604 TATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGA-AAA
258 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGACA
* * * * * *
23057668 ATCTATGCTCAGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGT
322 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * *
23057733 CTGTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGAAAGAAA-TTCAGT
387 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTC-GA
* * * * * *
23057797 ACTAGTCAAGCTTTCAAGAGTTTTTTTGTAACTTCGGTTCCTTATAGTATTCAAGACGATCCATT
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC---TAG-ATTCAAGACGATCCATT
** * ** * * *
23057862 CCTTCGAGCAATTTTTTGAACATTCCATGCTTAGGAAATCTCATCAATTGGTCAAAATAGTTTGT
509 CCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * *
23057927 CATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACATATTTACGTGAGAATTGTTTCTCT-CT
574 CATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCT
** * * *
23057991 TGGCCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTT
639 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * *
23058056 AAAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCCCGGGAAGTCGT
704 AAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGC
* * **
23058120 ATCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAGGTTTTGGTCTGAAAATTTAAAAA-TTAT
768 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTAT
* * *
23058184 TTATGTGAGAACTGTTTCTCTCCAT-
832 TTACGTGAGAATTGTTTCTCT-CTTG
* * * * * * * *
23058209 GTTCTTGGACAAACCTCCGAACTCGTCACACTTTTACGAGTTCTATAATAACTCCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACT-TGGTTCCTTAA
* * * * *
23058274 AGCATTCAAGACGATCCATTCCTTCGAGTAATTTTTC-AGACATGCCATGCTCAGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * *
23058338 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAATA-TTATTT
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * * * * *
23058401 ATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTT
193 ACGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTT
* * * *
23058466 CTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAG-C
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAGAC
* * * * * *
23058518 ATTCCATGCTGGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTCTACAGAAGTTTTGG
321 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
23058583 TCTGT-AAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-GTTCATGGACG-AACTTC
386 TCTGTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCTTGGACGAAATTTC
* * * * *
23058645 TGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAAAGTATTAAAGACAAACC
449 -GAACTTGTCAAACTTTTACGAGTTCTTTTAT-A-ATC-GTTCC-T--AG-ATTCAAGACGATCC
* * * * * * *
23058710 AATCCATCGAGCAATTTTTCGAACAATCCATGATCGGGAAATCGCATCATTTGGTTTAAATAGTT
506 ATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
23058775 TGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-
571 TGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * * *
23058839 CCTTGGTTCTTGAACGAACTTCTGTACTAGTCAAACCTTTAAGAGTTTTTTTATAACTTCGG-TC
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * ** *
23058903 CCT-ATGTATTCAAGACGATCCATTCCTTTAAGCAATTTTTCGAACATTCCATGCTTGGGAAATC
701 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
23058967 TCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTA
766 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTA
*
23059032 TTTAAGTGAGAATTGTTTCTCTCTTG
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * * * * *
23059058 GTCCTTGGACGAAATTCCT-TAGTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTA
* * * ***
23059122 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTCGGGAAGTTATA
64 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * *
23059186 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATTT
128 TCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * * * *
23059251 ATGTGAGAACTATTTCTCTCCATGTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTT
193 ACGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTT
*** * * *
23059316 CTGCGATAACTTCGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTCGAGCAATTTTTCAGACA
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGACA
* * * *
23059381 TTCCATGCTCGGGAAATTGCATCAATTGGTCGAAATAGTTTGTAATTTTGTAAACAAGTTTTGGA
322 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG-
* * * *
23059446 CCT-TGTATTTAAAA-TTATTTATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
* * *
23059509 ACTTGTCAAACTTTTAAGAGTTCTTTTATAA-C-TT-C-A-ATTCAAGACGTTCCATTCCTTCAA
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTTCGA
* * * * * *
23059569 TCAATTTTTCGAGCATTCCATGCTCAGGAAGTCGAATCATTTGGTCTAAATAGTTTGTCATTTGG
516 GCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * * * *
23059634 TACACAAGTTTTGGTCTGTAAATTAAAAACTCATTTACGTGAGAATTGTTTCTCTCCAT-GTTCA
581 TAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCT
* *
23059698 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAAAGTAT
646 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * *
23059763 TGAAGACAAACAATTCCATT-GAGCAACTTTTCGAATAATCCATGCTCGGGAAATCGCATCATTT
711 TCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT
* * * *
23059827 GGTTTAAATAGTTTGTAATTTTGTAAACAAGTTTTTGTATGTGAATTAAAAACTTATTTACGTGA
775 GGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGA
23059892 GAATTGTTTCTCTCTTG
840 GAATTGTTTCTCTCTTG
* * * * *
23059909 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAA
* *
23059974 AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTTGGGAAATCGTAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCAT
* * * *
23060038 CAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTCAATTAAAAACTTATTTA
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * * *
23060103 CGTGAGAATTGTTTCTCACTTGGTCCTTGGATGAAATTCCTAACTTGTCTAACTTTTACGAGTTC
194 CGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTC
* * *
23060168 TTTTATAACTTCGGTTCCTTAAAGTATTCAATG-C-ATTCCATTCCTACGGGCAATTTTCCGAG-
258 TTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGA-TCCATTCCTTCGAGCAATTTT-TGAGA
* *
23060230 CATTCCATGCTCGGGAAGTCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * **
23060295 GTCTGTAAATTAAAAAATTATTTATGTGAGAACTGTTTCTCACCAT-GTTCTTGGACG-AACCTC
385 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCA-CTTGGTTCTTGGACGAAATTTC
* *
23060358 TGAACTCGTCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAAAGCATTCAAGACGATCC
449 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC-T--AG-ATTCAAGACGATCC
* ** * * * *
23060423 ATTCCTTCGACCAATTTT-TTAGAAATTCCATGCTCGGGAAATTGCATCAATTGGTCCAAATAGT
506 ATTCCTTCGAGCAATTTTCCGAG-CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGT
* * * *
23060487 TTGTCATTTTGTAAAGAAGTTTTGGTCCT-TGTATCAAAAACTTATTTATGTGAGAATTGTTTCT
570 TTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCT
* * * * * * * *
23060551 C-ACTTCGTTCTTGGACGAAATTTCAAACTTGTCAAACTGTTAAGAGTTTTTTTATAA---C--T
634 CTCCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
23060610 T-C----AG--TTCAAGACGTTCCATTCCTTCGATCAATTTTTCGAGCATTCCATACTCGGGAAG
699 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA
* * * *
23060668 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTATAAACTAAAAACT
764 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACT
* *
23060733 TATTTACGTGAGAATTGTTTCTGTCCAT-
829 TATTTACGTGAGAATTGTTTCTCT-CTTG
* * *
23060761 GTTCATGGACGAACTT-TCGAACTAGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTA
1 GTTCTTGGACGAACTTCT-GAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* * * * * ** *
23060825 AAGTATTGAAGACAAACCATTCCATCGAGAAATTTTTCGAGTAATCCATGCTCGGGAAATCGCAT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23060890 CATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTA
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * *
23060955 CGTGAGAATTGATTCTTTCCATGTTCATGGACGAACTTCCGAACTCGTAAAACTGTTACGAGTTC
194 CGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTC
* * * * ***
23061020 TATTATAACATCGATTCCTTAAAGTATTGAAGACGATCCATTCCTTCGAGCAACTTTACCA-ACA
258 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAGACA
* * * * ** *
23061084 TTGCATGCTTGGGAAATCGCATCAATTGGTCAAAATAGTTTGTTGTTTTGTAAACAAGATTTGGT
322 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * *
23061149 CT-TAGAATTAAAACCTTATTTACGTGAGAATTGTTTCTCACTTGGTCCTTGGATGAAATTCCTA
387 CTGT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
* *
23061213 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAGTCAATACG-TACCAT
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC-T--AG-ATTCAAGACGAT-CCAT
* * *
23061277 TCCTTCGAGCAATTTTCCAAGCATTCCATGCTCGGGAAGTCGTATCATTTGGTCTAAATAGTTTG
508 TCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * *
23061342 TCATTTTGTAAACAAGTTTTGGTTTGTAAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCC
573 TCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCC
* * * ** *** *
23061407 AT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGATTCCT
638 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * *
23061471 TAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTCGGAAAATTG
703 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCG
* * * * *
23061535 CATCAATTGGTCCAAATAGTTTGTAATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTA
767 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTA
* * * *
23061598 TCTATGTGCGAATTGTTTCTCACTTG
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * *
23061624 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAAC----TT-C----
1 GTTCTTGGACGAACTTCT-GAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAA
* * * * * *
23061679 AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23061742 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGATCTGTAAATTAAAAACTTATTTAC
130 AATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23061807 GTGAGAATTGTTTCTCTCCATGTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
195 GTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTCT
* * * * * * * * *
23061872 ATTATAACATGGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGA-ACAA
259 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGACAT
* * *
23061936 TCCATGTTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
323 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * *
23062001 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGATCTTGAACG-AACTTCTGTA
388 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTC-GAA
* * *
23062065 CTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTATAGTATTCAAGACGATCCATTC
452 CTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC---TAG-ATTCAAGACGATCCATTC
* * * * * * * * * *
23062130 CTTCCAGCAATTTTTCGAACATTCCGTGCTTGGTAAATCTCATAAATTGGTCAAAATAGTTTGTC
510 CTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTC
* * * *
23062195 ATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAATTTATTTACGTAAGAATTGTTTCTCT-CTT
575 ATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTT
* * ** * *
23062259 GGTCCTTGGACGAAATTCCTTAGTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
640 GGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTA
* * * * * *
23062324 AAGTATTTAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTA
705 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
**
23062388 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGAAAATTTAAAAA-TTATT
769 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTATT
** * *
23062452 TATTTGAGAACTGTTTCTCTCCAT-
833 TACGTGAGAATTGTTTCTCT-CTTG
* * * ***
23062476 GTTCTTGGACGAACCTCTGAACTTGTCACACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAA
* * *
23062541 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATGCCATGCTCGGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * *
23062605 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * * * * * *
23062668 ATGTGCGAATTGTTTCTCACTTGGTTCTTTGACGAAATTTCAAAC-CTGTCAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTC-GTCAAACTTTTACGAGT
* * **
23062732 TCTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTCAATAAATTTTCTGAG-
256 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAGA
* * *
23062784 CATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTG
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * *
23062849 GTCTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-GTTCATGGACG-AACTTC
385 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCTTGGACGAAATTTC
* * * * ** *** * *
23062912 TGAACTCGTCAAACTTTTATGAGTTCTATTATAA-CATTGGTTCCTT-AA-A-G-T--ATTGCAT
449 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTT
* ** * * * * *
23062970 CGAGCAATTTTTCGAATAATCCATGCTCGAGAAATAGCATCATTTGGTTTAAATAATTTGTCATT
513 CGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * *
23063035 TTGTACACAAGTTTTTGTCTATGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGT
578 TTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGT
* * * * * * *
23063099 TCCTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTT-TCTTTATAACTTCGGTTCCTTATA
643 TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCT-TTTATAACTTCGGTTCCTTAAA
* * * * * *
23063163 GTAGTCAAGATGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATTA
707 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* * * * *
23063228 ATTGGTCAAAATAGTTTGTCATTTTGTAAATAAGATTTGGTCTTTGAATTAAAAACTTATTTACG
772 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
23063293 TGAGAATTGTTTCTCTCTTG
837 TGAGAATTGTTTCTCTCTTG
* * *
23063313 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* * * * *
23063377 AAGTATTCAATAC-ATTCCATTCCTTCGAGTAATTTTTCGAGCATTCCATGCTCGGGAAGTCGTA
64 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* *
23063441 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACTTATTT
128 TCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * * * *
23063506 ATGTGAGAACTGTTTCTCTCCATGTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACAAGTT
193 ACGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTT
*** * *
23063571 CTACGATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAGACA
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGACA
* * * * *
23063636 TTCCATGGTCGGGAAATTGCATCAATTGGTCGAAATAGTTTGTCATTTTGTAAATAAGTTTTGGT
322 TTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * * *
23063701 CCT-TGTATTTAAAA-TTATTTATGTGAGAAGTATTTCTCACTTGGTTCTTGGACGAAATTTTGA
387 -CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
* * *
23063764 ACTTGTCAAACTTTTAAGAGTTCTTTTATAA-C-TT-C-AG-TTCAAGACGTTCCATTCCTTCAA
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTTCGA
* *
23063824 TCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
516 GCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTG
* * ** *
23063889 TACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCGATGG-TCA
581 TAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCT
* * * * * * *
23063953 TGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTGTAACATCGGTTCTTTAAATTAT
646 TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
* * * * * * *
23064018 TGAAGACAAACCAATCCATCGAGTAATTTTTCGAACAATCCATGCTCGGGAAATCGCATCATTTG
711 TCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTG
* * *
23064083 GTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTACGTGCG
776 GTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAG
23064148 AATTGTTTCTCTCTTG
841 AATTGTTTCTCTCTTG
* * * * * * *
23064164 GTTCTTGAACTAACTTCTGTACTAGTCAAACTTTTATGA-TTTTTTTATAACTTCGATTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAA
* * *
23064228 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
** * *
23064293 AATTGGTAAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 AATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
*
23064358 GTGAGAATTGTTTCTCTCCATGTTCATGGACGAACTT-CTGAACTCGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCT-AACTCGTCAAACTTTTACGAGTTC
* * * * * * * *
23064422 TATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGTAATTTTTTGA-ACA
258 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTGAGACA
* *
23064486 ATCCATGCTCGGGAAATCGCATCATTTGGT-TAAAATAGTTTGTCATTTTGTAAACAAGTTTTTG
322 TTCCATGCTCGGGAAATCGCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * *
23064550 TCTGTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTTTGT
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
* * *
23064615 ACTAGTCAAACTTTTAAGA-TTTTTTTATAACATCGATTCCTTATAGTATTCAAGACGATCCATT
451 ACTTGTCAAACTTTTACGAGTTCTTTTAT-A-ATCG-TTCC---TAG-ATTCAAGACGATCCATT
* * * * *
23064679 CCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATCAATTGGTCAAAATAGTTTGT
509 CCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGT
* * * * *
23064744 TATTTTGTAAACAAGATTTGGTCTTTGAATTAAACACTTATTTATGTGAGAATTGTTTCTCT-CT
574 CATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCT
* * * * *
23064808 TGGTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCTTT
639 TGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTT
* * * * * *
23064873 AAAGTATTCAATAC-ATTCCATTCCTTCGAGCAAATTTTCGAGCATTCCATGCTCAGGAAGTCGT
704 AAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGC
* *
23064937 ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACTTATT
768 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
* * *
23065002 TATGTGAGAACTGTTTCTCTCCAT-
833 TACGTGAGAATTGTTTCTCT-CTTG
* * * ***
23065026 GTT-TTGGATGAACCTCCGAACTCA-TCAAACTTTTACGAGTTCTACGATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACT-AGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTA
* * *
23065089 AAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTAGGGAAATTGCA
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCA
* * * * *
23065153 TCAATTGGTCCAAGTAGTTTGTCATTTTGTAAACAAGTTTTTGTCCT-TGTATTTAAAA-TTATT
128 TCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATT
* * * * * * * * *
23065216 TATGTGAGAATTGTTTCTCACTTGGTTCTTGGATGAAATTTCGAACTTGTCAAACTTTTAAGAGT
192 TACGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGT
* * * * * **
23065281 TCTTTTATAACTTCAGTTCCTTTAAGTATTCAAGCCGTTCCCTTCCTTCGAGCAATTTTCCA-AG
256 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGA-
* * * * * * *
23065345 CATTCCATGCTTGAGAAATCTCATCAATTAGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTG
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * *
23065410 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTCCTTGGACGAAATTCCT
385 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCG
* * *
23065475 AACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTTGGTTCCTTAAAGTATTCAATAC-ATTCGA
450 AACTTGTCAAACTTTTACGAGTTCTTTTATAA---TCGTTCC-T--AG-ATTCAAGACGA-TCCA
* * * *
23065539 TACCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTATCATATGGTCTAAATAGTTT
507 TTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTT
* * * *
23065604 GTCATTTTGTAAACAAGTGTTGGTCCT-TGTATCAAAAACTTATTTATGTGAGAATTGTTTCTC-
572 GTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * *
23065667 ACTTGGTTCTTGGACGAAATTTCGAACTTGTGAAACTTTTAAGAGTTCTTTTATAA---C--TT-
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * *
23065726 C----AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTT-GAGCATTCCATGCTCGGGAAGTC
701 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
23065784 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTACACCAGTTTTGGTCTATAAATTAAAAACTTA
766 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTA
*
23065849 TTTACGTGAGAATTGTTTCTCTCCAT-
831 TTTACGTGAGAATTGTTTCTCT-CTTG
* * * * ** *
23065875 GTTCATGGATGAACTTCCGAACTAGTCAAACTTTTAC-AGGTTCTATTATAACATCAGCTCCTTA
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGA-GTTCTTTTATAAC-TTGGTTCCTTA
* * * * *
23065939 AAGTATTGAAGACAAACCATTCCATCGAGCAGTTTTTCGAACA----AT-C-C-----AT-G---
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23065989 C--TTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGCGAATTAAAAACTAATTTA
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * * *
23066052 CGTGAGAATTATTTCTTTCCATGTTCATGGATGAACTTTCGAACTCGTCAAACATTTACGAGTTC
194 CGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTC
* * *
23066117 TATTATAACATT-GGTTCCTTAAAGTATTGAAGACGATCCATTCCTTCGAGCAATTTTACGA-AC
258 TTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTT-TGAGAC
* * * * * *
23066180 ATTCCATGCTTGGGAAATCGCATCAATTGGTCAAAATAGTTTGTTATTTTGTAAATAAGATTTGG
321 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * *
23066245 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTCCTTGGACGAAATTCCTA
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGA
* *
23066310 ACTTGTCAAACTTTTACGAGTTCTTTTATAACTCTGGTTCCTTAAAGTATTCAATACGTTCCATT
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAA-TC--GTTCC-T--AG-ATTCAAGACGATCCATT
* * * * * * * *
23066375 CCTTCGAGTAATTTTCCAAGCATTCTATGC-CTAGGAAGTCGTATCATTCGGTCTAAACAGTTTG
509 CCTTCGAGCAATTTTCCGAGCATTCCATGCTC-GGGAAATCGCATCATTTGGTCTAAATAGTTTG
* * * * *
23066439 TCTTTTTGTAAACGAGTTTTGGTCTGTAAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCC
573 TCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCC
* * * ** ***
23066504 AT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGGTTCCT
638 TTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCT
* * *
23066568 TAAAGCATTCAAGACGATCCATTCCGTCGAGC-ATTTTTC-AGACATTCCATGCTCGGGAAATTG
703 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCG
* * * *
23066631 CATTAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-T-ATATTTAAAA-TT
767 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGA-ATTAAAAACTT
*
23066693 ATTTATC-TGAGAATTGTTTCTCACTTG
830 ATTTA-CGTGAGAATTGTTTCTCTCTTG
* * * * *
23066720 GTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTAGTTCCTTT
1 GTTCTTGGACGAACTTCT-GAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* * *
23066784 AAGTATTCAAG-CTGTTCCCTTCCTTCGAGCAATTTTTCG--------A-G--C-----ATTG--
64 AAGTATTCAAGAC-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
** *
23066830 T---TTGGTCTAAATAGTTTGTCATTTTGTACCCAAGTTTTGGTCTGTAAATTAAAAACTTATTT
128 TCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * *
23066892 ACGTGAGAATTGTTTCTCTCCATGTTCATGGACGAACTTTCGAACTCATCAAACTTTTACGAGTT
193 ACGTGAGAATTGTTTCTCT-CATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTT
* * * * * * *
23066957 CTATTATAACATCGGTTCCTTAAAGTATTGAAGA-GAAACTATTCCATCGAGTAATTTTTCGA-A
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGAGCAATTTTT-GAGA
* * * * *
23067020 TAATCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAGTTTTT
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * *
23067085 GTTTGTGAATTAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTCTTGAACG-AACTTCT
385 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTC-
* * *
23067149 GTACTAGTCAAACTTTTAAGAGTT-TTTCTATAACTTCGGTTCCATATAGCATTCAAGACGATCC
449 GAACTTGTCAAACTTTTACGAGTTCTTT-TATAA--TC-GTTCC---TAG-ATTCAAGACGATCC
* * * * * *
23067213 ATTCCTTCGAGCAATTTT-CGAACATTCCATGCTTGGGAAATCTCATCAATTGGTCAAAATTGTT
506 ATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
* * *
23067277 TGTCATATTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
571 TGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * *
23067342 -CTTGGTCCTTGGACGAAATTCCTAACTTGTCAAACCTTTACGAGTTCTTTTATAACTTTGGTTC
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
23067406 CTTAAAGTATTCAATAC-ATTCCATTCCTTCGAGCACA-TTTCCGAGCATTCCATGCTCGGGAAG
701 CTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCA-ATTTTTCGAACATTCCATGCTCGGGAAA
* *
23067469 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACT
764 TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACT
** * *
23067534 TATTTATATGAGAACTGTTTCTCTCCAT-
829 TATTTACGTGAGAATTGTTTCTCT-CTTG
* * * * ***
23067562 GTTCTTGGATGAACCTCCGAACTCA-TCAAACTTTTACAAGTTCTACGATAACTTCGGTTCCTTA
1 GTTCTTGGACGAACTTCTGAACT-AGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTA
* * * *
23067626 AAGCATTCAAGACGATCCATTCGTTCGAGC-ATTTTTCAAACATTCCATGCTCGGGAAATTGCAT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23067690 TAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * * * * *
23067753 ATGTGAGAATTGTTTCTCACTTGATTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTT
193 ACGTGAGAATTGTTTCTCTCATG-TTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTT
* * * * *
23067818 CTTTTATAACTTCAGTTCCTTTAAGTATTCAAGCCGTTCCCTTCCTTCGAGCAATTTTTCGAG-C
257 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGAC
* * * * *
23067882 ATTCCATACTTGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTATACAAGTTTTGG
321 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * * *
23067947 ACTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-GTT-TATGGACTAACTTTC
386 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCT-TGGACGAAATTTC
* * * * *
23068010 AAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGATTCCTTAAAGTATTAAAGA-GAAACC
449 GAACTTGTCAAACTTTTACGAGTTCTTTTAT-A-ATCG-TTCC-T--AG-ATTCAAGACG-ATCC
* * ** * * * *
23068074 ATTCCATCGAGCAATTTTTCGAATAATCCATGCTCGAGAAATCACATCATTTGGTTTAAATAGTT
506 ATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTT
*
23068139 TGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
571 TGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * *
23068204 -CTTGGTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTC
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * * * *
23068268 CTTATAGTATTGAAGACAATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGAAAATC
701 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * * *
23068333 TCATCAATTGGTCAAAATAGTTTGTCATTTTTTAAACAAGATTTGGTCTTTGAATTAAAAACTTA
766 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTA
*
23068398 TTTACGTGAGAATTATTTCTCTCTTG
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * *
23068424 GTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTCTTGGACGAACTT-CTGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTA
* *
23068488 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTC-GGAAAGTCGC
64 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA-TCGC
* * * **
23068551 ATC-TTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGTATGAAAATTTAAAAA-TTAT
127 ATCAATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTAT
* * * * *
23068614 TTATGTGAGAACTGTTTCTCACCATGTTCTTGGACGAACCT-CTGAACTCGTCATACTTTTACGA
191 TTACGTGAGAATTGTTTCTC-TCATGTTCTTGGACGAACTTCCT-AACTCGTCAAACTTTTACGA
* * * * **
23068678 GTTCTATGATAACTTCGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAATTTTCCAG
254 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAG
* * * *
23068743 ACATGCCATGCTCGGGAAATTGCATCAATTGGTCCAAATAGTTTGTCA-TTTGTAAACAAGTTTT
319 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * *
23068807 GGTCCT-TGTATTTAAAA-TTATTTATGTGAGAATTGTTTCTCACTTGGGTCTTGGACGAAATTT
384 GGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTT
* * *
23068870 TGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA-C-TT-C-AG-TTCAAGACGTTCCATTCCTT
448 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTT
* *
23068930 CGATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATT
513 CGAGCAATTTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATT
* * * * *
23068995 TTGTATACAAGTTTTGGTCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCCAT-GT
578 TTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGT
* * * * * * * *
23069059 TCATAGACGAACTTTCGAACTCGTCAAACTTTTATGAGTTCTATTATAACATCGGTTCTTTAAAG
643 TCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * * * *
23069124 TATTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGAGAAATCGCATCAT
708 TATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAT
* * *
23069189 CTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTGTTT-GTCTATGAATTAAAAACTTATTTACG
773 TTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTGGTCTGTGAATTAAAAACTTATTTACG
**
23069253 TGAGAATTACTTCTCTCTTG
837 TGAGAATTGTTTCTCTCTTG
* * * * * * * * *
23069273 GTTCTCGGATGAACTTTTGTACTAGTCAAACTTTTATGAATTTTTTTATAACTTCTGTTCCTTAT
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTT-GGTTCCTTAA
* * * * *
23069338 AGTATTCAAGATGATCCATTCCTTCGTGCAATTTTTTGAACATTCCATTCTTGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23069403 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 AATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * *
23069468 GTGAGAATTGTTTCTCACTTGGTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCT
195 GTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTCT
* * * *
23069533 TTTATAACTTTGGTTCCTTAAAGTATTCAATATGTTCCATTCCTTCGAGCAATTTTTCGAG-CAT
259 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGACAT
* * * *
23069597 TCCATGCTCGGGAAGTCGTATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGCC
323 TCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* * * * * * * **
23069662 TATAAATTAAAAAATTATGTACGTGAGAATTGTTTCTCTCCAT-GTTCTTGGATG-AACCTCTGA
388 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTGGTTCTTGGACGAAATTTC-GA
** *
23069725 ACTCATCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATT
451 ACTTGTCAAACTTTTACGAGTTCTTTTATAA--TC-GTTCC-T--AG-ATTCAAGACGATCCATT
* * * *
23069790 CCTTCGAGCAAATTTTCAGA-AATTCCATGCTCGGGAAA-CTGCATCAGTTGGTCCAAATAGTTT
509 CCTTCGAGC-AATTTTCCGAGCATTCCATGCTCGGGAAATC-GCATCATTTGGTCTAAATAGTTT
* *
23069853 GTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAAAACTTATTTATGTGAGAATTGTTTCTC-
572 GTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT
* * * * * * *
23069916 ACTTGGTTCTTGGATGAAATTTCGATCTTGTCAAACTGTTAAGAGTTCTTTTATAA---C--TT-
636 CCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTC
* * * *
23069975 C----AG--TTCAAGACGTTCCATTCC-TCGATCAATTTTTCGAGCATTCCATGCTTGGGAAATC
701 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
23070033 GCATCATTTGGTTTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTGAAAACTTA
766 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTA
* *
23070098 TTTACGTGAGAATTGTTTCTCCCAT-
831 TTTACGTGAGAATTGTTTCTCTCTTG
* * * * * * *
23070123 GTTCATAGACGAACTTCCGAACTCGTCAAACTTTTAGGAGTTCTGTTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAAC-TTGGTTCCTTAA
* * * * * *
23070188 AGTATTGAAGACAAACCATTCCATT-GAGCAATTTTTCGAACAATCCATGCTCGAGAAATTGCAT
65 AGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * *
23070252 C-ATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTTTGTGAATTAAAAACTTATTT
129 CAAT-TGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * *
23070316 ACGTGAGAATTATTTCTCTCTTGGTTCTCGGACGAACTT-CTGTACTAGTCAAACTTTTACGAGT
193 ACGTGAGAATTGTTTCTCTCAT-GTTCTTGGACGAACTTCCT-AACTCGTCAAACTTTTACGAGT
* * * * *
23070380 TTTTTTATAACTTCTGTTCCTTATAGTATTCAAGACGATCCATTCCTTTGTGCAATTTTTCGA-A
256 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGA
* * * * *
23070444 CATTCCATGCTTGGGAAATTGCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTG
320 CATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
*
23070509 GTCTTTGAATT
385 GTCTGTGAATT
23070520 TGATGTCAAA
Statistics
Matches: 13111, Mismatches: 2150, Indels: 943
0.81 0.13 0.06
Matches are distributed among these distances:
832 3 0.00
833 48 0.00
834 434 0.03
835 10 0.00
836 13 0.00
837 435 0.03
838 66 0.01
839 11 0.00
840 182 0.01
841 419 0.03
842 99 0.01
843 8 0.00
844 7 0.00
845 113 0.01
846 96 0.01
847 5 0.00
848 25 0.00
849 1204 0.09
850 1516 0.12
851 3452 0.26
852 1179 0.09
853 46 0.00
854 6 0.00
855 12 0.00
856 11 0.00
857 23 0.00
858 16 0.00
859 18 0.00
860 290 0.02
861 791 0.06
862 1278 0.10
863 571 0.04
864 703 0.05
865 21 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (856 bp):
GTTCTTGGACGAACTTCTGAACTAGTCAAACTTTTACGAGTTCTTTTATAACTTGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
ATTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCATGTTCTTGGACGAACTTCCTAACTCGTCAAACTTTTACGAGTTCTTT
TATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTGAGACATTCC
ATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGT
GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGAACTTG
TCAAACTTTTACGAGTTCTTTTATAATCGTTCCTAGATTCAAGACGATCCATTCCTTCGAGCAAT
TTTCCGAGCATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
AAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTGGTTCTTGGAC
GAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTA
AATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACGTGAGAATTG
TTTCTCTCTTG
Found at i:23056916 original size:432 final size:432
Alignment explanation
Indices: 23053932--23070519 Score: 17516
Period size: 432 Copynumber: 38.9 Consensus size: 432
23053922 TTGCATCAAT
* * * * * *
23053932 GTTCATGGACGAACTTCCAAACTTATCAAACTTTTTCGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * *
23053997 AGTATTCAAGACGAACCATTCCATCGAGCAATTTTTCGAACAATCCATGCTCGGGAAATCTCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * *
23054062 ATCTGGTTTAACTAGTTTGTCATTTTGTAAACAATTTTTGGTTTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * ** * * * * *
23054127 GTGAGAATTGTTTCTCTCTTAGTTATTGTTCGAACTTCTGAACTAG-AAAAATAGTTATGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACT-TTTACGAGTTC
* * * *
23054191 TTTTATAACTTCGGTTCCTCAAA-TCATTCAAGACGATCCATTCCATCGAGAAATTTTTTGAACA
259 TTTTATAACTTCGGTTCCTTAAAGT-ATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA
** ** * * *
23054255 TTCCACACTCGATAAATCACATCATTTGGACTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGT
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * *
23054320 CTTTGAATTAAAAACTTATTTACGTGAGAATTCTTTCTCT-CTTT
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23054364 GAT-TTGGATGAACTTTCGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCCTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * * * *
23054428 AGTATTGAAGACAAACCATTCCATCGAGAAATTTTTCGAACAATCCGTGCTCGGGAAATTGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23054493 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTCTGAATTAAAAACTTATTCAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * ** *
23054558 ATGAGAATCGTTTCACTCTTGGTTCTTGGACGAACTTCTGTACTACTCAAACTTTTATGAGTT-T
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT
* *
23054622 TTTATGACTTCGGTTCCTTATAGTATTCAAGACGATCCA-TCCTTCGAGCAATTTTTCGAACATT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* * * * *
23054686 CCATGCTTGGGAAATCGCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCT
325 CCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* *
23054751 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTG
390 GTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * *
23054793 GTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * *
23054858 AGTATTAAATAC-ATTCCATTCCTTTGAGCAATTTTT-GAGCATTCCATGCTCGGGAAGTCGTAT
65 AGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23054921 CATTTGATCAAAATAGTTTGTCATTTTGTAAACAAGTCTTGGTCTGTAAATTAAAAAATTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * ** *
23054986 CGTGAGAACTGTTTCTCTCCAT-GTTATTGAACGAACCTT-TGAACTCATCAAACTTTTATGAGT
194 CGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAA-CTTCTGAACTTGTCAAACTTTTACGAGT
* *
23055049 TCTATTATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTT-GAGA
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-A
* ** * *
23055113 AATTCTGTGCTCGGGAAAT-TGCATCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTT
321 CATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * *
23055177 GGTCCGTGTATCAAAAACTTATTTATGTGAGAATTGTTTCTC-ACTTG
385 GGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23055224 GTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * *
23055279 AG--TTCAAGACGTTCCATTCCTTCGATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCACATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23055342 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTATAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * *
23055407 GTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTCCGAACTAGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * *
23055471 TATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACAA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
23055536 TCCATGCTCGGGAAATCGCATCATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
324 TCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* *
23055601 AGTGAATTAAAAACTTATTTACGTGAGAATTATTT-TC-CTCTTG
389 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTC-CTTG
* * * * * * *
23055644 GTTCTCGGATGAACTTCTGTACTAGTCAAACTTTTATGAGTTTTTTTTATAACTT-TGTTCCTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG--TTTTTTATAACTTCGGTTCCTTA
* * * * *
23055708 TAGTATTCAAGATGATCCATTCCTTCGTGCAATTATTT-GAACATCCCATGCTTGGGAAATCGCA
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATCGCA
* * * *
23055772 TCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* *
23055837 ACGTGAGAATTGTTTCTCTCTTGGTCCTTGAACGAA-TTCCT-AACTTGTCAAACTTTTACGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGT
* * * * *
23055900 TCTTTTATAACTACAGTTCCTTAAAGTATTCAATAC-ATTCCATTCCTTTGAGCAATTTTTCGAG
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAA
* *
23055964 CAATCCATGCTCGGGAAGTCGT-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
321 CATTCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
** * * * * * *
23056028 GGTCTGAAAATTTAAAAGTTATTTATGTGAGAACTGTTTCTCTACAT-
385 GGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23056075 GTTCTGGGATGAACCTCCGAACTCGTCACACTTTTACGAGTTCTATGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * *
23056140 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATGCCATACTCGGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * *
23056204 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAATA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * *
23056267 ATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAACTT-TGAACTTGTCAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACG-AACTTCTGAACTTGTCAAACTTTTACGAGT
* * * * * *
23056331 TCTTTTATAA---C--TT-C----A--ATTCAAGATGTTCCATTCCTTCAATCAATTTTCCGAGC
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * *
23056384 ATTCCATGCTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGG
322 ATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* *
23056449 TCTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-
387 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23056494 GTTCATGGACGAACTTCCGAACTCGTCAAACTTTTACGAGTTTTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTTT-TTATAACTTCGGTTCCTTAA
* * * * * * * *
23056559 AGTATTGAAGACAAACCAATCCATGGAGCAATTTTTCGAACAATCCACGCTCGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23056624 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAATTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * *
23056689 GTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTT
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT
*
23056754 TTTATAACTTCGGTTCCTTATAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* * * **
23056819 CCATGCTTGGGAAATCTCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGACTTGGTCT
325 CCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
*
23056884 TTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTG
390 GTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23056926 G-TCTTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTA
1 GTTC-TTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTA
* * * * *
23056990 AAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTA
64 AAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* * * *
23057054 TCATTTGGTCTAAACAGTTTGTCATTATGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * * * **
23057119 ATGTGAGAACTGTTTCTCTCCAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGT
193 ACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGT
* * * * * * *
23057183 TCTATGATAACTTCGGTTCCTTAAAGCATTTAAGACGATCCATTGCTTCGAGCAATTTTTCAAAT
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
23057248 ATTCCATGGTCGGGAAAT-TGCATCAATTGGTCCAAATAGTTTGTCATTTTATAAACAAGTTTTG
322 ATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
23057312 GTCCT-TGTATTTAAAA-TTATTTATGTGAGAATTGTTTCTCT-CTTG
386 GT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * *
23057357 GTTCTTGGATGAAATTTCGAACTTGTCAAACTGTTAAGAGTTCTTTTATAA---C---T--TT--
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * * * * * *
23057412 AGT-TT-AAGATGTTGCTTTCCTTCAATCAGTTTTTCGAGCATTCCATGCTCGGGAAGTCGCATT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23057475 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23057540 GTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * * * *
23057604 TATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGAAAAA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * * * *
23057669 TCTATGCTCAGGAAATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
324 TCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
23057734 TGTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT-CTTG
389 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * * * * * *
23057777 GTTCTTGAAAGAAATTCAGTACTAGTCAAGCTTTCAAGAGTTTTTTTGTAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTTTTTATAACTTCGGTTCCTTAA
* ** *
23057842 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTTAGGAAATCTCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23057907 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACATATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
** *
23057972 GTGAGAATTGTTTCTCTCTTGGCCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTC
* * * *
23058036 TTTTATAACTTTGGTTCCTTAAAGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACA
* * * *
23058100 TTCCATGCCCGGGAAGTCGT-ATCATTTGGTCTAAATAGTGTGTCATTTTGTAAACAGGTTTTGG
323 TTCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
** * * *
23058164 TCTGAAAATTTAAAAA-TTATTTATGTGAGAACTGTTTCTCTCCAT-
387 TCTGTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23058209 GTTCTTGGACAAACCTCCGAACTCGTCACACTTTTACGAGTTCTATAATAACTCCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * *
23058274 AGCATTCAAGACGATCCATTCCTTCGAGTAATTTTTC-AGACATGCCATGCTCAGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23058338 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAATA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * *
23058401 ATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * * * *
23058465 TCTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGC
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * * *
23058518 ATTCCATGCTGGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTCTACAGAAGTTTTGG
322 ATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
*
23058583 TCTGT-AAGTTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-
387 TCTGTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * *
23058628 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * * *
23058693 AGTATTAAAGACAAACCAATCCATCGAGCAATTTTTCGAACAATCCATGATCGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23058758 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * * * *
23058823 GTGAGAATTGTTTCTCCCTTGGTTCTTGAACGAACTTCTGTACTAGTCAAACCTTTAAGAGTTTT
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT
* * **
23058888 TTTATAACTTCGG-TCCCT-ATGTATTCAAGACGATCCATTCCTTTAAGCAATTTTTCGAACATT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* * * *
23058951 CCATGCTTGGGAAATCTCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCT
325 CCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCT
* *
23059016 TTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT-CTTG
390 GTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * ** * *
23059058 GTCCTTGGACGAAATTCCTTAGTTGTCAAACTTTTACGATTTCTTTTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * ***
23059123 AGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTCGGGAAGTTATAT
65 AGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* *
23059187 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGCCTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * * * **
23059252 TGTGAGAACTATTTCTCTCCAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTT
194 CGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
*** * *
23059316 CTGCGATAACTTCGGTTCCTTAAAGCATTCAAAACGATCCATTCCTTCGAGCAATTTTTC-AGAC
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-AC
* * *
23059380 ATTCCATGCTCGGGAAAT-TGCATCAATTGGTCGAAATAGTTTGTAATTTTGTAAACAAGTTTTG
322 ATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * *
23059444 GACCT-TGTATTTAAAA-TTATTTATGTGAGAATTGTTTCTC-ACTTG
386 G-TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23059489 GTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * * *
23059544 A--ATTCAAGACGTTCCATTCCTTCAATCAATTTTTCGAGCATTCCATGCTCAGGAAGTCGAATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23059607 ATTTGGTCTAAATAGTTTGTCATTTGGTACACAAGTTTTGGTCTGTAAATTAAAAACTCATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23059672 GTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * * *
23059736 TATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACAATTCCATT-GAGCAACTTTTCGAATA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACA
* * * * *
23059800 ATCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTAATTTTGTAAACAAGTTTTTGT
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
*
23059865 ATGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTG
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * *
23059909 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTTTTTATAACTTCGGTTCCTTAA
* *
23059974 AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTTGGGAAATCGTAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23060038 CAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTCAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * *
23060103 CGTGAGAATTGTTTCTCACTTGGTCCTTGGATGAAATTCCT-AACTTGTCTAACTTTTACGAGTT
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTT
* * * *
23060167 CTTTTATAACTTCGGTTCCTTAAAGTATTCAATG-C-ATTCCATTCCTACGGGCAATTTTCCGAG
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAA-GACGA-TCCATTCCTTCGAGCAATTTTTCGAA
*
23060230 CATTCCATGCTCGGGAAGTCGT-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
321 CATTCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
23060294 GGTCTGTAAATTAAAAAATTATTTATGTGAGAACTGTTTCTCACCAT-
385 GGTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * *
23060341 GTTCTTGGACGAACCTCTGAACTCGTCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * *
23060406 AGCATTCAAGACGATCCATTCCTTCGACCAATTTTTTAGAA-ATTCCATGCTCGGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAA-TTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23060470 CAATTGGTCCAAATAGTTTGTCATTTTGTAAAGAAGTTTTGGTCCT-TGTATCAAAAACTTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * * * *
23060534 ATGTGAGAATTGTTTCTCACTTCGTTCTTGGACGAAATT-TCAAACTTGTCAAACTGTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * * *
23060598 TTTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTCGATCAATTTTTCGAGC
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * *
23060651 ATTCCATACTCGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGG
322 ATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * * * *
23060716 TCTATAAACTAAAAACTTATTTACGTGAGAATTGTTTCTGTCCAT-
387 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * *
23060761 GTTCATGGACGAACTTTCGAACTAGTCAAACTTTTACGAGTTCTATTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * ** *
23060826 AGTATTGAAGACAAACCATTCCATCGAGAAATTTTTCGAGTAATCCATGCTCGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23060891 ATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * * * * *
23060956 GTGAGAATTGATTCTTTCCAT-GTTCATGGACGAACTTCCGAACTCGTAAAACTGTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * *
23061020 TATTATAACATCGATTCCTTAAAGTATTGAAGACGATCCATTCCTTCGAGCAACTTTACCAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * * * * ** *
23061085 TGCATGCTTGGGAAATCGCATCAATTGGTCAAAATAGTTTGTTGTTTTGTAAACAAGATTTGGTC
324 TCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
* *
23061150 T-TAGAATTAAAACCTTATTTACGTGAGAATTGTTTCTC-ACTTG
389 TGT-GAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * *
23061193 GTCCTTGGATGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * *
23061258 AGTAGTCAATACG-TACCATTCCTTCGAGCAA-TTTTCCAAGCATTCCATGCTCGGGAAGTCGTA
65 AGTATTCAAGACGAT-CCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATCGCA
* *
23061321 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTTTGTAAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * * * * **
23061386 ATGTGAGAACTGTTTCTCTCCAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAGT
193 ACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGT
*** * *
23061450 TCTACGATAACTTCGATTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGA
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-A
* * * *
23061514 CATTCCATGCTCGGAAAAT-TGCATCAATTGGTCCAAATAGTTTGTAATTTTGTAAACAAGTTTT
321 CATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * * *
23061578 GGTCCT-TGTATTTAAAA-TTATCTATGTGCGAATTGTTTCTC-ACTTG
385 GGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23061624 GTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * *
23061679 AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23061742 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGATCTGTAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23061807 GTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * * * *
23061871 TATTATAACATGGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGCAATTTTTCGAACAA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
23061936 TCCATGTTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
324 TCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
23062001 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTG
389 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23062044 GATCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTTTATAACTTCGGTTCCTTAT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAG-TTTTTTATAACTTCGGTTCCTTAA
* * * * * *
23062109 AGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTCGAACATTCCGTGCTTGGTAAATCTCATA
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
23062174 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAATTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * *
23062239 GTAAGAATTGTTTCTCTCTTGGTCCTTGGACGAAATTCCT-TAGTTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTC
* * * * *
23062303 TTTTATAACTTTGGTTCCTTAAAGTATTTAATAC-ATTCCATTCCTTCGAGCAATTTTCCGAGCA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACA
*
23062367 TTCCATGCTCGGGAAGTCGT-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
323 TTCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
** ** * *
23062431 TCTGAAAATTTAAAAA-TTATTTATTTGAGAACTGTTTCTCTCCAT-
387 TCTGTGAA-TTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * ***
23062476 GTTCTTGGACGAACCTCTGAACTTGTCACACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * *
23062541 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATGCCATGCTCGGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * *
23062605 CAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * * * * *
23062668 ATGTGCGAATTGTTTCTCACTTGGTTCTTTGACGAAATT-TCAAACCTGTCAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* ** * *
23062732 TCTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTC-AATAAATTTTCTGAG
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAA
* * *
23062784 CATTCCATGCTCGGGAAGTCACATCATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTG
321 CATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* *
23062849 GTCTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * *
23062895 GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTATGAGTTCTATTATAACATT-GGTTCCTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAAC-TTCGGTTCCTTA
* * * *
23062959 AAGTATT------G---CA-----TCGAGCAATTTTTCGAATAATCCATGCTCGAGAAATAGCAT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * * *
23063010 CATTTGGTTTAAATAATTTGTCATTTTGTACACAAGTTTTTGTCTATGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * *
23063075 CGTGAGAATTGTTTCTCTCTTGGTTCCTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTT-
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * *
23063139 TCTTTATAACTTCGGTTCCTTATAGTAGTCAAGATGATCCATTCCTTCGAGCAATTTTCCGAACA
259 T-TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA
* * * * * *
23063204 TTCCATGCTTGGGAAATCTCATTAATTGGTCAAAATAGTTTGTCATTTTGTAAATAAGATTTGGT
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
*
23063269 CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTG
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * *
23063313 GTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * *
23063378 AGTATTCAATAC-ATTCCATTCCTTCGAGTAATTTTTCGAGCATTCCATGCTCGGGAAGTCGTAT
65 AGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
*
23063442 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * * ** *
23063507 TGTGAGAACTGTTTCTCTCCAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACAAGTT
194 CGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
*** *
23063571 CTACGATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGAC
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-AC
* * * *
23063635 ATTCCATGGTCGGGAAAT-TGCATCAATTGGTCGAAATAGTTTGTCATTTTGTAAATAAGTTTTG
322 ATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * * * * *
23063699 GTCCT-TGTATTTAAAA-TTATTTATGTGAGAAGTATTTCTC-ACTTG
386 GT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* ** *
23063744 GTTCTTGGACGAAATTTTGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * *
23063799 AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* *
23063862 ATTTGGTCTAAATAGTTTGTCATTTTGTACACAAGTTTTGGTCTGTAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23063927 GTGAGAATTGTTTCTCTCGATGG-TCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCTC-TTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * * * * * * * * * *
23063991 TATTGTAACATCGGTTCTTTAAATTATTGAAGACAAACCAATCCATCGAGTAATTTTTCGAACAA
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * *
23064056 TCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
324 TCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
23064121 TGTGAATTAAAAACTTATTTACGTGCGAATTGTTTCTCT-CTTG
389 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * * * *
23064164 GTTCTTGAACTAACTTCTGTACTAGTCAAACTTTTATGATTTTTTTATAACTTCGATTCCTTATA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTATAACTTCGGTTCCTTAAA
* * *
23064229 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* ** * *
23064294 ATTGGTAAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTACG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
* * *
23064359 TGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTCTGAACTCGTCAAACTTTTACGAGTTCT
196 TGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCT
* * * * * * * * * *
23064423 ATTATAACATCGGTTCCTTAAAGTATTGAAGACAAACCAATCCATCGAGTAATTTTTTGAACAAT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATT
* *
23064488 CCATGCTCGGGAAATCGCATCATTTGGT-TAAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTC
325 CCATGCTCGGGAAATCTCATCATTTGGTCT-AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTC
*
23064552 TGTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCT-CTTG
389 TGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* ** * * * * * * *
23064595 GTTCTTGAACGAACTTTTGTACTAGTCAAACTTTTAAGATTTTTTTATAACATCGATTCCTTATA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTATAACTTCGGTTCCTTAAA
* * *
23064660 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTTGGGAAATCTCATCA
66 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
* * * * * * *
23064725 ATTGGTCAAAATAGTTTGTTATTTTGTAAACAAGATTTGGTCTTTGAATTAAACACTTATTTATG
131 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
* * *
23064790 TGAGAATTGTTTCTCTCTTGGTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTATGAGTTCT
196 TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTCT
* * * *
23064854 TTTATAACTTCGGTTCTTTAAAGTATTCAATAC-ATTCCATTCCTTCGAGCAAATTTTCGAGCAT
260 TTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACAT
* * *
23064918 TCCATGCTCAGGAAGTCGT-ATCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAAGTTTTGGT
324 TCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * *
23064982 CTGTAAATTAAAAACTTATTTATGTGAGAACTGTTTCTCTCCAT-
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * ** ***
23065026 GTT-TTGGATGAACCTCCGAACTCATCAAACTTTTACGAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * *
23065090 AGCATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-AGACATTCCATGCTAGGGAAATTGCAT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-ACATTCCATGCTCGGGAAATCGCAT
* * * * * *
23065154 CAATTGGTCCAAGTAGTTTGTCATTTTGTAAACAAGTTTTTGTCCT-TGTATTTAAAA-TTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * *
23065217 ATGTGAGAATTGTTTCTCACTTGGTTCTTGGATGAAATT-TCGAACTTGTCAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * * * * *
23065281 TCTTTTATAACTTCAGTTCCTTTAAGTATTCAAGCCGTTCCCTTCCTTCGAGCAA-TTTTCCAAG
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-
* * * * * *
23065345 CATTCCATGCTTGAGAAATCTCATCAATTAGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTG
321 CATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* *
23065410 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTG
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * *
23065456 GTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAAGTTTGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * * *
23065521 AGTATTCAATAC-ATTCGATACCTTCGAGCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGTAT
65 AGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23065585 CATATGGTCTAAATAGTTTGTCATTTTGTAAACAAGTGTTGGTCCT-TGTATCAAAAACTTATTT
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTT
* * * * *
23065649 ATGTGAGAATTGTTTCTCACTTGGTTCTTGGACGAAATT-TCGAACTTGTGAAACTTTTAAGAGT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * * *
23065713 TCTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCCTTCAATCAATTTTT-GAGC
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
* * * * *
23065765 ATTCCATGCTCGGGAAGTCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTACACCAGTTTTGG
322 ATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
* * *
23065830 TCTATAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-
387 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23065875 GTTCATGGATGAACTTCCGAACTAGTCAAACTTTTAC-AGGTTCTATTATAACATCAGCTCCTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTT-TTTTATAACTTCGGTTCCTTA
* * * * *
23065939 AAGTATTGAAGACAAACCATTCCATCGAGCAGTTTTTCGAACA----AT-C-C-----AT-G---
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23065989 C--TTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGCGAATTAAAAACTAATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * * * *
23066052 CGTGAGAATTATTTCTTTCCAT-GTTCATGGATGAACTT-TCGAACTCGTCAAACATTTACGAGT
194 CGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * *
23066115 TCTATTATAACATT-GGTTCCTTAAAGTATTGAAGACGATCCATTCCTTCGAGCAATTTTACGAA
257 TCTTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * * * * * *
23066179 CATTCCATGCTTGGGAAATCGCATCAATTGGTCAAAATAGTTTGTTATTTTGTAAATAAGATTTG
321 CATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* *
23066244 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-ACTTG
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * *
23066290 GTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAAC-TCTGGTTCCTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTC-GGTTCCTTA
* * * * * * * *
23066354 AAGTATTCAATACGTTCCATTCCTTCGAGTAA-TTTTCCAAGCATTCTATGC-CTAGGAAGTCGT
64 AAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTC-GGGAAATCGC
* * * * *
23066417 ATCATTCGGTCTAAACAGTTTGTCTTTTTGTAAACGAGTTTTGGTCTGTAAATTAAAAACTTATT
127 ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATT
* * * * * * **
23066482 TATGTGAGAACTGTTTCTCTCCAT-GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACGAG
192 TACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG
*** * *
23066546 TTCTACGATAACTTCGGTTCCTTAAAGCATTCAAGACGATCCATTCCGTCGAGC-ATTTTTC-AG
256 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-
* * *
23066609 ACATTCCATGCTCGGGAAAT-TGCATTAATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTT
320 ACATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* *
23066673 TGGTCCT-T-ATATTTAAAA-TTATTTATC-TGAGAATTGTTTCTC-ACTTG
384 TGGT-CTGTGA-ATTAAAAACTTATTTA-CGTGAGAATTGTTTCTCTCCTTG
* * * ** *
23066720 GTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTTCTTTTATAACTTTAGTTCCTTTA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* *
23066785 AGTATTCAAG-CTGTTCCCTTCCTTCGAGCAATTTTTCG--------A-G--C-----AT----T
65 AGTATTCAAGAC-GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* ** *
23066829 -GTTTGGTCTAAATAGTTTGTCATTTTGTACCCAAGTTTTGGTCTGTAAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * **
23066893 CGTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTT-TCGAACTCATCAAACTTTTACGAGT
194 CGTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGT
* * * * * * *
23066956 TCTATTATAACATCGGTTCCTTAAAGTATTGAAGA-GAAACTATTCCATCGAGTAATTTTTCGAA
257 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACG-ATCCATTCCTTCGAGCAATTTTTCGAA
* * * * * *
23067020 TAATCCATGCTCGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAGTTTTT
321 CATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
23067085 GTTTGTGAATTAAAAACTTATTCACATGAGAATTGTTTCTCT-CTTG
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23067131 GTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTTTTTCTATAACTTCGGTTCCATAT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTT-TATAACTTCGGTTCCTTAA
* * *
23067196 AGCATTCAAGACGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTTGGGAAATCTCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * * * *
23067260 AATTGGTCAAAATTGTTTGTCATATTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23067325 GTGAGAATTGTTTCTCTCTTGGTCCTTGGACGAAATTCCT-AACTTGTCAAACCTTTACGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTC
* * * *
23067389 TTTTATAACTTTGGTTCCTTAAAGTATTCAATAC-ATTCCATTCCTTCGAGCACA-TTTCCGAGC
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA-TCCATTCCTTCGAGCA-ATTTTTCGAAC
*
23067452 ATTCCATGCTCGGGAAGTCGT-ATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
322 ATTCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* ** * *
23067516 GTCTGTAAATTAAAAACTTATTTATATGAGAACTGTTTCTCTCCAT-
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * ** * ***
23067562 GTTCTTGGATGAACCTCCGAACTCATCAAACTTTTACAAGTTCTACGATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * *
23067627 AGCATTCAAGACGATCCATTCGTTCGAGC-ATTTTTCAAACATTCCATGCTCGGGAAATTGCATT
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23067691 AATTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTTAAAA-TTATTTA
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATTTA
* * * * *
23067754 TGTGAGAATTGTTTCTCACTTGATTCTTGGACGAAATT-TCGAACTTGTCAAACTTTTAAGAGTT
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTT
* * * * * *
23067818 CTTTTATAACTTCAGTTCCTTTAAGTATTCAAGCCGTTCCCTTCCTTCGAGCAATTTTTCGAGCA
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA
* * * * * * *
23067883 TTCCATACTTGGGAAGTCGCATCATTTGGTCTAAATAGTTTGTCATTTTTTATACAAGTTTTGGA
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
23067948 CTGTAAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCAT-
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * * *
23067992 GTT-TATGGACTAACTTTCAAACTCGTCAAACTTTTACGAGTTCTATTATAACATCGATTCCTTA
1 GTTCT-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTA
* * * * * * *
23068056 AAGTATTAAAGA-GAAACCATTCCATCGAGCAATTTTTCGAATAATCCATGCTCGAGAAATCACA
64 AAGTATTCAAGACG-ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCA
* *
23068120 TCATTTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTCTGTGAATTAAAAACTTATTT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTT
* * * *
23068185 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGAACGAACTTCTGTACTAGTCAAACTTTTAAGAGTT
193 ACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTT
* * * * *
23068250 TTTTTATAACTTCGGTTCCTTATAGTATTGAAGACAATCCATTCCTTCGAGCAATTTTCCGAACA
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA
* * * * * *
23068315 TTCCATGCTTGGAAAATCTCATCAATTGGTCAAAATAGTTTGTCATTTTTTAAACAAGATTTGGT
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* *
23068380 CTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCT-CTTG
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * *
23068424 GTCCTTGGACGAAATTCCTAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* *
23068489 AGTATTCAATAC-ATTCCATTCCTTCGAGCAATTTTTCGAGCATTCCATGCTC-GGAAAGTCGCA
65 AGTATTCAAGACGA-TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAA-TCGCA
* * **
23068552 TC-TTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGTATGAAAATTTAAAAA-TTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAA-TTAAAAACTTATT
* * * * * * *
23068615 TATGTGAGAACTGTTTCTCACCAT-GTTCTTGGACGAACCTCTGAACTCGTCATACTTTTACGAG
192 TACGTGAGAATTGTTTCTC-TCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAG
* * * * *
23068679 TTCTATGATAACTTCGGTTCCTTAAAGCATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCCAG
256 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA-
* * *
23068743 ACATGCCATGCTCGGGAAAT-TGCATCAATTGGTCCAAATAGTTTGTCA-TTTGTAAACAAGTTT
320 ACATTCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
23068806 TGGTCCT-TGTATTTAAAA-TTATTTATGTGAGAATTGTTTCTC-ACTTG
384 TGGT-CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * ** *
23068853 GGTCTTGGACGAAATTTTGAACTTGTCAAACTTTTAAGAGTTCTTTTATAA---C--TT-C----
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * *
23068908 AG--TTCAAGACGTTCCATTCCTTCGATCAATTTTCCGAGCATTCCATGCTCGGGAAGTCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * *
23068971 ATTTGGTCTAAATAGTTTGTCATTTTGTATACAAGTTTTGGTCTATAAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * * * * *
23069036 GTGAGAATTGTTTCACTCCAT-GTTCATAGACGAACTT-TCGAACTCGTCAAACTTTTATGAGTT
195 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAGTT
* * * * * * *
23069099 CTATTATAACATCGGTTCTTTAAAGTATTGAAGACAAACCATTCCATCGAGCAATTTTTCGAACA
258 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACA
* * * * *
23069164 ATCCATGCTCGAGAAATCGCATCATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTGTTT-G
323 TTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTGG
* **
23069228 TCTATGAATTAAAAACTTATTTACGTGAGAATTACTTCTCT-CTTG
387 TCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * ** * * * * * *
23069273 GTTCTCGGATGAACTTTTGTACTAGTCAAACTTTTATGAATTTTTTTATAACTTCTGTTCCTTAT
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACG-AGTTTTTTATAACTTCGGTTCCTTAA
* * * * *
23069338 AGTATTCAAGATGATCCATTCCTTCGTGCAATTTTTTGAACATTCCATTCTTGGGAAATCGCATC
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATC
* * * *
23069403 AATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGTCTTTGAATTAAAAACTTATTTAC
130 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTAC
* * *
23069468 GTGAGAATTGTTTCTCACTTGGTCCTTGGACGAAATTCCT-AACTTGTCAAACTTTTACGAGTTC
195 GTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTT-CTGAACTTGTCAAACTTTTACGAGTTC
* * * * *
23069532 TTTTATAACTTTGGTTCCTTAAAGTATTCAATATGTTCCATTCCTTCGAGCAATTTTTCGAGCAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * *
23069597 TCCATGCTCGGGAAGTCGT-ATCATTTGGTCTATATAGTTTGTCATTTTGTAAACAAGTTTTGGC
324 TCCATGCTCGGGAAATC-TCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
* * * * *
23069661 CTATAAATTAAAAAATTATGTACGTGAGAATTGTTTCTCTCCAT-
388 CTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * ** *
23069705 GTTCTTGGATGAACCTCTGAACTCATCAAACTTTTACGAGTTCTATTATAACTTCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* *
23069770 AGCATTCAAGACGATCCATTCCTTCGAGCAAATTTTCAGAA-ATTCCATGCTCGGGAAA-CTGCA
65 AGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC-GCA
* * *
23069833 TCAGTTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TGTATTAAAAACTTATT
128 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT-CTGTGAATTAAAAACTTATT
* * * * * * *
23069897 TATGTGAGAATTGTTTCTCACTTGGTTCTTGGATGAAATT-TCGATCTTGTCAAACTGTTAAGAG
192 TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCT-GAACTTGTCAAACTTTTACGAG
* * *
23069961 TTCTTTTATAA---C--TT-C----AG--TTCAAGACGTTCCATTCC-TCGATCAATTTTTCGAG
256 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * * *
23070013 CATTCCATGCTTGGGAAATCGCATCATTTGGTTTAAATAGTTTGTCATTTTGTACACAAGTTTTG
321 CATTCCATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
23070078 GTCTGTAAATTGAAAACTTATTTACGTGAGAATTGTTTCTC-CCAT-
386 GTCTGTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
* * * * * *
23070123 GTTCATAGACGAACTTCCGAACTCGTCAAACTTTTAGGAGTTCTGTTATAACATCGGTTCCTTAA
1 GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTT-TTTTATAACTTCGGTTCCTTAA
* * * * * *
23070188 AGTATTGAAGACAAACCATTCCATT-GAGCAATTTTTCGAACAATCCATGCTCGAGAAATTGCAT
65 AGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCAT
* * * *
23070252 CATCTGGTTTAAATAGTTTGTCATTTTGTAAACAAGTTTTTGTTTGTGAATTAAAAACTTATTTA
129 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTA
* * * * *
23070317 CGTGAGAATTATTTCTCTCTTGGTTCTCGGACGAACTTCTGTACTAGTCAAACTTTTACGAGTTT
194 CGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTC
* * * *
23070382 TTTTATAACTTCTGTTCCTTATAGTATTCAAGACGATCCATTCCTTTGTGCAATTTTTCGAACAT
259 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACAT
* * * *
23070447 TCCATGCTTGGGAAAT-TGCATCAATTGGTCAAAATAGTTTGTCATTTTGTAAACAAGATTTGGT
324 TCCATGCTCGGGAAATCT-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGT
*
23070511 CTTTGAATT
388 CTGTGAATT
23070520 TGATGTCAAA
Statistics
Matches: 13711, Mismatches: 1962, Indels: 967
0.82 0.12 0.06
Matches are distributed among these distances:
401 2 0.00
402 108 0.01
403 2 0.00
404 3 0.00
405 81 0.01
406 66 0.00
407 4 0.00
408 3 0.00
409 157 0.01
410 86 0.01
411 105 0.01
412 4 0.00
413 2 0.00
414 40 0.00
415 175 0.01
416 3 0.00
417 66 0.00
418 629 0.05
419 2241 0.16
420 1182 0.09
421 43 0.00
422 10 0.00
423 12 0.00
424 6 0.00
425 22 0.00
426 27 0.00
427 9 0.00
428 11 0.00
429 336 0.02
430 1268 0.09
431 3026 0.22
432 3915 0.29
433 62 0.00
434 5 0.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (432 bp):
GTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTTTTTATAACTTCGGTTCCTTAAA
GTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCA
TTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTGTGAATTAAAAACTTATTTACG
TGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTTTTACGAGTTCTT
TTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTC
CATGCTCGGGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTG
TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCCTTG
Found at i:23067015 original size:195 final size:194
Alignment explanation
Indices: 23066637--23067018 Score: 466
Period size: 195 Copynumber: 2.0 Consensus size: 194
23066627 ATTGCATTAA
* *
23066637 TTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTATATTTAAAATTATTTATCTG
1 TTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATTAAAAATTATTTATCTG
* * ** *
23066702 AGAATTGTTTCTCACTTGGTTCTTGGACGAAATTTCGAACTTGTCAAACTTTTAAGAGTTCTTTT
66 AGAATTGTTTCTCACATGGTTCATGGACGAAATTTCGAACTCATCAAACTTTTAAGAGTTCTATT
* * * * ** * *
23066767 ATAACTTTAGTTCCTTTAAGTATTCAAGCTGTTCCCTTCCTTCGAGCAATTTTTCGAGCATTGT
131 ATAACATCAGTTCCTTAAAGTATTCAAGCAGAACCATTCCATCGAGCAATTTTTCGAGCATTGT
* **
23066831 TTGGTCTAAATAGTTTGTCATTTTGTACCCAAGTTTTGGT-CTGTAAATTAAAAACTTATTTA-C
1 TTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCT-TAAATTAAAAA-TTATTTATC
* * *
23066894 GTGAGAATTGTTTCTCTCCAT-GTTCATGGACGAACTTTCGAACTCATCAAACTTTTACGAGTTC
64 -TGAGAATTGTTTCTC-ACATGGTTCATGGACGAAATTTCGAACTCATCAAACTTTTAAGAGTTC
* * * *
23066958 TATTATAACATCGGTTCCTTAAAGTATTGAAG-AGAAACTATTCCATCGAGTAATTTTTCGA
127 TATTATAACATCAGTTCCTTAAAGTATTCAAGCAG-AACCATTCCATCGAGCAATTTTTCGA
23067019 ATAATCCATG
Statistics
Matches: 158, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
193 2 0.01
194 48 0.30
195 106 0.67
196 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (194 bp):
TTGGTCCAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCCTTAAATTAAAAATTATTTATCTG
AGAATTGTTTCTCACATGGTTCATGGACGAAATTTCGAACTCATCAAACTTTTAAGAGTTCTATT
ATAACATCAGTTCCTTAAAGTATTCAAGCAGAACCATTCCATCGAGCAATTTTTCGAGCATTGT
Found at i:23084441 original size:16 final size:17
Alignment explanation
Indices: 23084422--23084456 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
23084412 AAAAAGCAGC
23084422 TTATTT-AAAAATATTT
1 TTATTTCAAAAATATTT
23084438 TTATTTCAAAAATATTT
1 TTATTTCAAAAATATTT
23084455 TT
1 TT
23084457 TTAGAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATTTCAAAAATATTT
Found at i:23085447 original size:3 final size:3
Alignment explanation
Indices: 23085439--23085487 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
23085429 AATTCATCCC
23085439 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23085487 T
1 T
23085488 TTGGTTTGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:23093147 original size:7 final size:7
Alignment explanation
Indices: 23093101--23093175 Score: 99
Period size: 6 Copynumber: 11.6 Consensus size: 7
23093091 ATTTTCTCTA
23093101 AAATG-G
1 AAATGAG
23093107 AAATG-G
1 AAATGAG
23093113 AAATGA-
1 AAATGAG
23093119 AAATGA-
1 AAATGAG
23093125 AAATG-G
1 AAATGAG
23093131 AAATGA-
1 AAATGAG
23093137 AAATGAG
1 AAATGAG
23093144 AAATGAG
1 AAATGAG
23093151 AAATGAG
1 AAATGAG
23093158 AAATGAG
1 AAATGAG
*
23093165 CAATGAG
1 AAATGAG
23093172 AAAT
1 AAAT
23093176 TGAATTCATT
Statistics
Matches: 63, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
6 33 0.52
7 30 0.48
ACGTcount: A:0.57, C:0.01, G:0.25, T:0.16
Consensus pattern (7 bp):
AAATGAG
Found at i:23095149 original size:29 final size:29
Alignment explanation
Indices: 23095107--23095163 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
23095097 ACCCTATGGG
*
23095107 CTTTATTTCTAAAATCCAATAAAACATTA
1 CTTTACTTCTAAAATCCAATAAAACATTA
23095136 CTTTACTTCTAAAATCCAATAAAACATT
1 CTTTACTTCTAAAATCCAATAAAACATT
23095164 GTTATTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (29 bp):
CTTTACTTCTAAAATCCAATAAAACATTA
Found at i:23100967 original size:21 final size:21
Alignment explanation
Indices: 23100941--23100992 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
23100931 TGAGACAATA
23100941 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTAATG-CTT
* * *
23100962 CTACCGAAACATGTAATGTTT
1 CTACCGATACAAGTAATGCTT
23100983 CTACCGATAC
1 CTACCGATAC
23100993 TAAAAACCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (21 bp):
CTACCGATACAAGTAATGCTT
Found at i:23125338 original size:3 final size:3
Alignment explanation
Indices: 23125330--23125376 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
23125320 GAGAAGGATC
*
23125330 AAG AAG AAG AAG AAG AAGG AA- AAG AAG AA- TAG AAAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AA-G AAG AAG AAG AAG AAG -AAG AAG AAG AAG
23125375 AA
1 AA
23125377 CCTGTCGAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 3 0.08
3 30 0.79
4 5 0.13
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:23133124 original size:70 final size:70
Alignment explanation
Indices: 23133037--23133177 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
23133027 TATGAACCAA
23133037 GTGAAATGGAGAGTGATCAATCCTCTAACTAAAGTTTGAGACGTCGAGGTCAACAAAATAGAGGT
1 GTGAAATGGAGAGTGATCAATCCTCTAACTAAAGTTTGAGACGTCGAGGTCAACAAAATAGAGGT
23133102 CCGAG
66 CCGAG
23133107 GTGAAATGGAGAGTGATCAATCCTCTAACTAAAGTTTGAGACGTCGAGGTCAACAAAATAGAGGT
1 GTGAAATGGAGAGTGATCAATCCTCTAACTAAAGTTTGAGACGTCGAGGTCAACAAAATAGAGGT
23133172 CCGAG
66 CCGAG
23133177 G
1 G
23133178 ATAGATGATA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (70 bp):
GTGAAATGGAGAGTGATCAATCCTCTAACTAAAGTTTGAGACGTCGAGGTCAACAAAATAGAGGT
CCGAG
Found at i:23137518 original size:15 final size:15
Alignment explanation
Indices: 23137500--23137556 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
23137490 GAACATTGGA
23137500 GTTGCGAACACTGAT
1 GTTGCGAACACTGAT
* ** *
23137515 GTTGCAAACACACAC
1 GTTGCGAACACTGAT
**
23137530 GACGCGAACACTGAT
1 GTTGCGAACACTGAT
23137545 GTTGCGAACACT
1 GTTGCGAACACT
23137557 CGCGTTGCGA
Statistics
Matches: 30, Mismatches: 12, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (15 bp):
GTTGCGAACACTGAT
Found at i:23142266 original size:30 final size:30
Alignment explanation
Indices: 23142198--23142266 Score: 70
Period size: 30 Copynumber: 2.3 Consensus size: 30
23142188 TTAATAGTCT
*
23142198 AAATCTTTATAATTTTTAAATGATTAAATCA
1 AAAT-TTTATAATTTTTAAATGATCAAATCA
* *
23142229 AATTTTTATCATTTTTGAAA-GATCAAAGT-A
1 AAATTTTATAATTTTT-AAATGATCAAA-TCA
23142259 AAATTTTA
1 AAATTTTA
23142267 CTATTACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
30 25 0.78
31 7 0.22
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (30 bp):
AAATTTTATAATTTTTAAATGATCAAATCA
Found at i:23144657 original size:19 final size:18
Alignment explanation
Indices: 23144622--23144657 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
23144612 TTTATTTTAT
23144622 TTTATTACACTCTAAAAA
1 TTTATTACACTCTAAAAA
23144640 TTTATTACTACT-TAAAAA
1 TTTATTAC-ACTCTAAAAA
23144658 CAAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.44, C:0.14, G:0.00, T:0.42
Consensus pattern (18 bp):
TTTATTACACTCTAAAAA
Found at i:23145168 original size:18 final size:18
Alignment explanation
Indices: 23145134--23145171 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
23145124 ATAGTTACAA
*
23145134 AAATTTAATTAATTTTTT
1 AAATTTAATAAATTTTTT
*
23145152 AAATTTAA-AAATATTTT
1 AAATTTAATAAATTTTTT
23145169 AAA
1 AAA
23145172 AATTCAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTTAATAAATTTTTT
Found at i:23149263 original size:28 final size:28
Alignment explanation
Indices: 23149227--23149305 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
23149217 TGCAAAAATA
* * *
23149227 TGACTGTTGGAATCTGATCGTTGGAACT
1 TGACCGTTGCAATATGATCGTTGGAACT
* *
23149255 TGACCGTTGCAATATGATCTTTGGAATT
1 TGACCGTTGCAATATGATCGTTGGAACT
* * *
23149283 TGCCCATTGCAATATGGTCGTTG
1 TGACCGTTGCAATATGATCGTTG
23149306 AATTTTTTTG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (28 bp):
TGACCGTTGCAATATGATCGTTGGAACT
Found at i:23151346 original size:74 final size:73
Alignment explanation
Indices: 23151247--23151395 Score: 210
Period size: 75 Copynumber: 2.0 Consensus size: 73
23151237 AATATAAAAG
* * *
23151247 AAATGAAAATTAATATTCTTTTGGAAAGAATATAATT-CATTTTTTAACTTTTCATTTGCCTTCT
1 AAATGAAAATCAATATTCTTTTGGAAAGAATATAATTCCATTTTCTAACTTTTCATTTGCCTTAT
*
23151311 TTATTAAT
66 CTATTAAT
* * *
23151319 AAATGAATAATCATATATTCTTTTGGAAAGAATATCATTCCATTTTCTATCTTTTCGTTTGCCTT
1 AAATGAA-AATCA-ATATTCTTTTGGAAAGAATATAATTCCATTTTCTAACTTTTCATTTGCCTT
23151384 ATCTATTAAT
64 ATCTATTAAT
23151394 AA
1 AA
23151396 GGGTATAATC
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
72 7 0.10
73 4 0.06
74 24 0.36
75 32 0.48
ACGTcount: A:0.34, C:0.12, G:0.07, T:0.47
Consensus pattern (73 bp):
AAATGAAAATCAATATTCTTTTGGAAAGAATATAATTCCATTTTCTAACTTTTCATTTGCCTTAT
CTATTAAT
Found at i:23152997 original size:40 final size:40
Alignment explanation
Indices: 23152941--23153020 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
23152931 TGTCATCAAA
* *
23152941 CAAGAATGAAAATTATATGTCATTAAAGAACCCGTTCCTT
1 CAAGAACGAAAATTATATGTCATTAAAGAACCCATTCCTT
*
23152981 CAAGAACGAAAGTTATATGTCATTAAAGAACCCATTCCTT
1 CAAGAACGAAAATTATATGTCATTAAAGAACCCATTCCTT
23153021 TTGAACCAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (40 bp):
CAAGAACGAAAATTATATGTCATTAAAGAACCCATTCCTT
Found at i:23159607 original size:138 final size:138
Alignment explanation
Indices: 23159430--23159709 Score: 384
Period size: 138 Copynumber: 2.0 Consensus size: 138
23159420 ACATAGATAA
* * *
23159430 AATTAAAATATGAATTTGATTCATATAAAATATTAATTGTATATATTTGA-CTGAGTTTATTAAT
1 AATTAAAATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGATC-AAATTTATTAAT
* * *
23159494 ATAAACAATTATATTAATTAATTTTGGTCAAAATATAAAAGACAT-GAAAATTTATATTCTTTTG
65 ATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAA-TAATACTCTTTTG
23159558 GAAAGAATAT
129 GAAAGAATAT
* * * *
23159568 AATTAATATATGAATTTTATTTATACAAAATATTAATTGTATATATTTTATCAAATTTATTAATA
1 AATTAAAATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGATCAAATTTATTAATA
* * * ** *
23159633 TAAATAGTTATATTAATTAATTTCGGTGAAAATATAAAATTCATGGAACATAATACTCTTTTGGA
66 TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAATAATACTCTTTTGGA
23159698 AAGAATAT
131 AAGAATAT
23159706 AATT
1 AATT
23159710 CGTTTTTATA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
138 119 0.96
139 5 0.04
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.42
Consensus pattern (138 bp):
AATTAAAATATGAATTTGATTCATACAAAATATTAATTGTATATATTTGATCAAATTTATTAATA
TAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGGAAAATAATACTCTTTTGGA
AAGAATAT
Found at i:23159774 original size:75 final size:75
Alignment explanation
Indices: 23159691--23159834 Score: 173
Period size: 75 Copynumber: 1.9 Consensus size: 75
23159681 CATAATACTC
* * *
23159691 TTTTGGAAAGAATATAATTCGTTTTTATAACTTTTCATTCGCATTCTCTATTAA-ATAGGGAATA
1 TTTTGGAAAGAATATAATTCATTTCTATAACTTTCCATTCGCATTCTCTATTAATA-AGGGAATA
23159755 ATCCTATATTT
65 ATCCTATATTT
* * * ** * * *
23159766 TTTTGGAAAGAGTATTATTCATTTCTCTAGGTTTCCATTTGCCTTTTCTATTAATAAGGGAATAA
1 TTTTGGAAAGAATATAATTCATTTCTATAACTTTCCATTCGCATTCTCTATTAATAAGGGAATAA
23159831 TCCT
66 TCCT
23159835 TGTTTCCTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
75 56 0.98
76 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.45
Consensus pattern (75 bp):
TTTTGGAAAGAATATAATTCATTTCTATAACTTTCCATTCGCATTCTCTATTAATAAGGGAATAA
TCCTATATTT
Found at i:23167253 original size:18 final size:19
Alignment explanation
Indices: 23167230--23167269 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
23167220 AACTAAATTA
23167230 ACAAAAAGAAA-TGCAATG
1 ACAAAAAGAAATTGCAATG
*
23167248 ACAAAATGAAATTGCAATG
1 ACAAAAAGAAATTGCAATG
23167267 ACA
1 ACA
23167270 GTAAAATGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.57, C:0.12, G:0.15, T:0.15
Consensus pattern (19 bp):
ACAAAAAGAAATTGCAATG
Found at i:23174702 original size:18 final size:18
Alignment explanation
Indices: 23174679--23174713 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23174669 AATTAAAAAG
23174679 AAATAAGAAT-AAATAAAT
1 AAATAA-AATAAAATAAAT
23174697 AAATAAAATAAAATAAA
1 AAATAAAATAAAATAAA
23174714 ATCGTATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (18 bp):
AAATAAAATAAAATAAAT
Found at i:23174710 original size:10 final size:9
Alignment explanation
Indices: 23174674--23174715 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
23174664 AAATTAATTA
*
23174674 AAAAGAAAT
1 AAAATAAAT
23174683 AAGAATAAAT
1 AA-AATAAAT
23174693 -AAATAAAT
1 AAAATAAAT
23174701 AAAATAAAAT
1 AAAAT-AAAT
23174711 AAAAT
1 AAAAT
23174716 CGTATCTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.24
9 7 0.24
10 15 0.52
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (9 bp):
AAAATAAAT
Found at i:23181756 original size:21 final size:21
Alignment explanation
Indices: 23181705--23181758 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
23181695 AGCTGTAGTT
*
23181705 TACTACCGATAGAAGAGGAGG
1 TACTACCGATACAAGAGGAGG
* * *
23181726 TTCTATCGATACAAGGATG-GG
1 TACTACCGATACAA-GAGGAGG
23181747 TACTACCGATAC
1 TACTACCGATAC
23181759 TTCCCATACT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (21 bp):
TACTACCGATACAAGAGGAGG
Found at i:23183829 original size:13 final size:13
Alignment explanation
Indices: 23183803--23183836 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
23183793 CTCGTTTCAC
*
23183803 AACTGAAAATTAAA
1 AACT-AAAACTAAA
23183817 AACTAAAACTAAA
1 AACTAAAACTAAA
23183830 AACTAAA
1 AACTAAA
23183837 GTATAAGCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
AACTAAAACTAAA
Found at i:23184732 original size:21 final size:21
Alignment explanation
Indices: 23184708--23184759 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
23184698 TGAGACAATA
23184708 CTACCGATACAAGT-ATGACTT
1 CTACCGATACAAGTCAT-ACTT
* *
23184729 CTACCGAAACATGTCATACTT
1 CTACCGATACAAGTCATACTT
23184750 CTACCGATAC
1 CTACCGATAC
23184760 TAAAAAATCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (21 bp):
CTACCGATACAAGTCATACTT
Found at i:23185889 original size:193 final size:193
Alignment explanation
Indices: 23185502--23185947 Score: 596
Period size: 193 Copynumber: 2.3 Consensus size: 193
23185492 TACTAGTACT
* * *
23185502 CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACGTATACGGTACC-CTAGCCATTGATACGG
1 CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACATATGCGGTACCTC-AGCCATCGATA--G
*
23185566 TGCCTATCTGTACTATAAACTGTTCCCTAATGATGCTGCTCACATGAGCTGTCGAGAGTATGCAA
63 TGCCTATCTGTACTATAAACTGTTCCCTAATGATGCTGCTCACATGAGCTGTCGAGAATATGCAA
* *
23185631 TAAGCATAGTCCCAACCATCGTAGGGCCTGTAATCCATTTAAGATCCATATCTCTTTCTCGAGTC
128 TAAGCATAATCCCAACCATCGTAGGGCCTGTAATCCATTTAAGATCCATATCTCTTTCCCGAGTC
23185696 A
193 A
*
23185697 CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACATATGCTGTACCTCAGCCATCGATA-TG-
1 CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACATATGCGGTACCTCAGCCATCGATAGTGC
* * * *
23185760 GTATCTGTGC-ATATAATTGTTCCCTAATGATGCTGCTCAC-TCGAGCTGTCGAGAATATGCACT
66 CTATCTGTACTATA-AACTGTTCCCTAATGATGCTGCTCACAT-GAGCTGTCGAGAATATGCA-A
* * * * *
23185823 TATGCATAAATCTCAACCATCGTAGGGCTTGTAATCCATTTAGGATCCATATTTCTTTCCCGAGT
128 TAAGCAT-AATCCCAACCATCGTAGGGCCTGTAATCCATTTAAGATCCATATCTCTTTCCCGAGT
23185888 CA
192 CA
* * ** * *
23185890 AGATGCTGCTCACACGAGCTGTCAAGGACTCGTAACTTATGCGGTACCTCATCCATCG
1 CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACATATGCGGTACCTCAGCCATCG
23185948 CATCGATTTC
Statistics
Matches: 223, Mismatches: 23, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
190 4 0.02
191 51 0.23
192 8 0.04
193 104 0.47
195 55 0.25
196 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (193 bp):
CGATGCTGCTCACACGAGCTATTGAGGACTCGTAACATATGCGGTACCTCAGCCATCGATAGTGC
CTATCTGTACTATAAACTGTTCCCTAATGATGCTGCTCACATGAGCTGTCGAGAATATGCAATAA
GCATAATCCCAACCATCGTAGGGCCTGTAATCCATTTAAGATCCATATCTCTTTCCCGAGTCA
Found at i:23187843 original size:21 final size:21
Alignment explanation
Indices: 23187819--23187865 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
23187809 CCCAACGAGC
*
23187819 AAATTCCTATAATGAGTATTT
1 AAATTCATATAATGAGTATTT
* *
23187840 AAATTCATGTAATGTGTATTT
1 AAATTCATATAATGAGTATTT
23187861 AAATT
1 AAATT
23187866 ATGAGTCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.38, C:0.06, G:0.11, T:0.45
Consensus pattern (21 bp):
AAATTCATATAATGAGTATTT
Found at i:23188906 original size:24 final size:24
Alignment explanation
Indices: 23188879--23188930 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
23188869 CCCCTTAACG
23188879 TTCTACTCCATCTCACC-TCCTTAT
1 TTCTACTCC-TCTCACCTTCCTTAT
* * *
23188903 TTCTCCTTCTTTCACCTTCCTTAT
1 TTCTACTCCTCTCACCTTCCTTAT
23188927 TTCT
1 TTCT
23188931 CCATTTAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.12, C:0.38, G:0.00, T:0.50
Consensus pattern (24 bp):
TTCTACTCCTCTCACCTTCCTTAT
Found at i:23195728 original size:535 final size:535
Alignment explanation
Indices: 23194719--23195789 Score: 2088
Period size: 535 Copynumber: 2.0 Consensus size: 535
23194709 TTCGATTTTC
*
23194719 GGTCCCCCTACTTAAATTGAACAATGTCCCCATTGTTCAAAACAATAGAGAATGTAAAAATAAAA
1 GGTCCCCCTACTTAAATTGAACAATGTCCCCATTGTTAAAAACAATAGAGAATGTAAAAATAAAA
*
23194784 GTGAATAAATATTGTACACCAGGTAAGATAAAAAAAGAGGAGGTGAGTCAAATTGACTTCTTAAG
66 GTGAATAAATATTGTACACCAGGTAAGATAAAAAAAGAGGAGGTGAGTCAAATTGACTGCTTAAG
23194849 TACCAAGCTCTTTCAATGTCCAATCCTAGACATGTACATATTTATTACCACACTCTTATTTTTCT
131 TACCAAGCTCTTTCAATGTCCAATCCTAGACATGTACATATTTATTACCACACTCTTATTTTTCT
23194914 AGGTTACTCAATTATTGTCTTCAACCTCTTAATTTATTATGCAAGAATTAAAAACTAGCCTAGTG
196 AGGTTACTCAATTATTGTCTTCAACCTCTTAATTTATTATGCAAGAATTAAAAACTAGCCTAGTG
23194979 ACCTAATCCTAAATTCATTCAAGAATTAAAGGATGAAAATAAAATAACAGAAATTAAAGAAAGAC
261 ACCTAATCCTAAATTCATTCAAGAATTAAAGGATGAAAATAAAATAACAGAAATTAAAGAAAGAC
23195044 AAGTTCCCCTCTTTTATTTATGTTTAGACCCTCTAGACTTTGACTCTTCTTTTGCTTCGTAGTCC
326 AAGTTCCCCTCTTTTATTTATGTTTAGACCCTCTAGACTTTGACTCTTCTTTTGCTTCGTAGTCC
23195109 CTATTGTTGCTCAAGTCACTTTGCTCATTCTTCGCCATTGGAGTCCAGGTTCAAATATGTAATAT
391 CTATTGTTGCTCAAGTCACTTTGCTCATTCTTCGCCATTGGAGTCCAGGTTCAAATATGTAATAT
23195174 GGAAATTCAAGAACAAAGATAAATGGGTCACAAAATACTTTTTCAAGTGCACTTTTAAATGCGTC
456 GGAAATTCAAGAACAAAGATAAATGGGTCACAAAATACTTTTTCAAGTGCACTTTTAAATGCGTC
23195239 ATCTCATATCTTCGT
521 ATCTCATATCTTCGT
23195254 GGTCCCCCTACTTAAATTGAACAATGTCCCCATTGTTAAAAACAATAGAGAATGTAAAAATAAAA
1 GGTCCCCCTACTTAAATTGAACAATGTCCCCATTGTTAAAAACAATAGAGAATGTAAAAATAAAA
23195319 GTGAATAAATATTGTACACCAGGTAAGATAAAAAAAGAGGAGGTGAGTCAAATTGACTGCTTAAG
66 GTGAATAAATATTGTACACCAGGTAAGATAAAAAAAGAGGAGGTGAGTCAAATTGACTGCTTAAG
23195384 TACCAAGCTCTTTCAATGTCCAATCCTAGACATGTACATATTTATTACCACACTCTTATTTTTCT
131 TACCAAGCTCTTTCAATGTCCAATCCTAGACATGTACATATTTATTACCACACTCTTATTTTTCT
23195449 AGGTTACTCAATTATTGTCTTCAACCTCTTAATTTATTATGCAAGAATTAAAAACTAGCCTAGTG
196 AGGTTACTCAATTATTGTCTTCAACCTCTTAATTTATTATGCAAGAATTAAAAACTAGCCTAGTG
23195514 ACCTAATCCTAAATTCATTCAAGAATTAAAGGATGAAAATAAAATAACAGAAATTAAAGAAAGAC
261 ACCTAATCCTAAATTCATTCAAGAATTAAAGGATGAAAATAAAATAACAGAAATTAAAGAAAGAC
23195579 AAGTTCCCCTCTTTTATTTATGTTTAGACCCTCTAGACTTTGACTCTTCTTTTGCTTCGTAGTCC
326 AAGTTCCCCTCTTTTATTTATGTTTAGACCCTCTAGACTTTGACTCTTCTTTTGCTTCGTAGTCC
23195644 CTATTGTTGCTCAAGTCACTTTGCTCATTCTTCGCCATTGGAGTCCAGGTTCAAATATGTAATAT
391 CTATTGTTGCTCAAGTCACTTTGCTCATTCTTCGCCATTGGAGTCCAGGTTCAAATATGTAATAT
* * *
23195709 GGAAATTTAGGCACAAAGATAAATGGGTCACAAAATACTTTTTCAAGTGCACTTTTAAATGCGTC
456 GGAAATTCAAGAACAAAGATAAATGGGTCACAAAATACTTTTTCAAGTGCACTTTTAAATGCGTC
*
23195774 ATCTCATATGTTCGT
521 ATCTCATATCTTCGT
23195789 G
1 G
23195790 CATCTCTAAT
Statistics
Matches: 530, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
535 530 1.00
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (535 bp):
GGTCCCCCTACTTAAATTGAACAATGTCCCCATTGTTAAAAACAATAGAGAATGTAAAAATAAAA
GTGAATAAATATTGTACACCAGGTAAGATAAAAAAAGAGGAGGTGAGTCAAATTGACTGCTTAAG
TACCAAGCTCTTTCAATGTCCAATCCTAGACATGTACATATTTATTACCACACTCTTATTTTTCT
AGGTTACTCAATTATTGTCTTCAACCTCTTAATTTATTATGCAAGAATTAAAAACTAGCCTAGTG
ACCTAATCCTAAATTCATTCAAGAATTAAAGGATGAAAATAAAATAACAGAAATTAAAGAAAGAC
AAGTTCCCCTCTTTTATTTATGTTTAGACCCTCTAGACTTTGACTCTTCTTTTGCTTCGTAGTCC
CTATTGTTGCTCAAGTCACTTTGCTCATTCTTCGCCATTGGAGTCCAGGTTCAAATATGTAATAT
GGAAATTCAAGAACAAAGATAAATGGGTCACAAAATACTTTTTCAAGTGCACTTTTAAATGCGTC
ATCTCATATCTTCGT
Found at i:23195998 original size:12 final size:12
Alignment explanation
Indices: 23195981--23196022 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
23195971 CCTCCTTATT
23195981 TTCTTCAGGATC
1 TTCTTCAGGATC
*
23195993 TTCTTCAGGGTC
1 TTCTTCAGGATC
* *
23196005 TTCCTCAGGATT
1 TTCTTCAGGATC
23196017 TTCTTC
1 TTCTTC
23196023 TTCTTCTTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.12, C:0.26, G:0.17, T:0.45
Consensus pattern (12 bp):
TTCTTCAGGATC
Found at i:23199004 original size:71 final size:71
Alignment explanation
Indices: 23198902--23199044 Score: 259
Period size: 71 Copynumber: 2.0 Consensus size: 71
23198892 TCTGGAAAAT
* *
23198902 CCCTAGAAATGGTGTTGTAAAATCTTCCTCTGCATGTTGCTGATCTCAAGCCGTATCAAAATCGT
1 CCCTAGAAATGGTGTTGTAAAATCTTCCTCTGCATGCTGCTGATCTCAAGCCGCATCAAAATCGT
23198967 CCTGGC
66 CCTGGC
*
23198973 CCCTAGAGATGGTGTTGTAAAATCTTCCTCTGCATGCTGCTGATCTCAAGCCGCATCAAAATCGT
1 CCCTAGAAATGGTGTTGTAAAATCTTCCTCTGCATGCTGCTGATCTCAAGCCGCATCAAAATCGT
23199038 CCTGGC
66 CCTGGC
23199044 C
1 C
23199045 TCTACGTAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (71 bp):
CCCTAGAAATGGTGTTGTAAAATCTTCCTCTGCATGCTGCTGATCTCAAGCCGCATCAAAATCGT
CCTGGC
Found at i:23199285 original size:68 final size:68
Alignment explanation
Indices: 23199211--23199346 Score: 218
Period size: 68 Copynumber: 2.0 Consensus size: 68
23199201 CTTTAGAGAA
* *
23199211 ATATATGAAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATCAACTTCCATGTTATTAA
1 ATATATGAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATCAACTTCCATATTATTAA
23199276 TAT
66 TAT
* * * *
23199279 ATATATGGAAGGTTTATTGAAACATTATATCATTTCCAAAAGGATATTAACTTCCATATTTTTAA
1 ATATATGAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATCAACTTCCATATTATTAA
23199344 TAT
66 TAT
23199347 TCAATTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.40
Consensus pattern (68 bp):
ATATATGAAAGGTTTATTAAAACATTATATCATTTCCAAAAGGATATCAACTTCCATATTATTAA
TAT
Found at i:23199454 original size:123 final size:123
Alignment explanation
Indices: 23199279--23199593 Score: 558
Period size: 123 Copynumber: 2.6 Consensus size: 123
23199269 TTATTAATAT
* * * *
23199279 ATATATGGAAGGTTTATTGAAACATTATATCATTTCCAAAAGGATATTAACTTCCATATTTTTAA
1 ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
* * *
23199344 TATTCAATTTCTTTTTATATAATATCTTATATTAAAATAAAAATATTCCTTTAAAGAA
66 TATTCAATTTCCTTTTATATAATATCTCAAATTAAAATAAAAATATTCCTTTAAAGAA
23199402 ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
1 ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
*
23199467 TATTCAATTTCCTTTTATATAATATCTCAAATTAAAATAGAAATATTCCTTTAAAGAA
66 TATTCAATTTCCTTTTATATAATATCTCAAATTAAAATAAAAATATTCCTTTAAAGAA
23199525 ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
1 ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
23199590 TATT
66 TATT
23199594 TAACGAAATC
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 184 1.00
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (123 bp):
ATATATGGAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAA
TATTCAATTTCCTTTTATATAATATCTCAAATTAAAATAAAAATATTCCTTTAAAGAA
Found at i:23199650 original size:107 final size:106
Alignment explanation
Indices: 23199532--23199740 Score: 382
Period size: 107 Copynumber: 2.0 Consensus size: 106
23199522 GAAATATATG
*
23199532 GAAGGTTTATTAAAATATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTTAATATTTAA
1 GAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATG-TTTTAATATTTAA
*
23199597 CGAAATCATTATAATTAATTATTATAATTACATTAAATAAGT
65 CGAAATCATTATAATTAATAATTATAATTACATTAAATAAGT
23199639 GAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTAATATTTAAC
1 GAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTAATATTTAAC
*
23199704 GAAATCATTATAATTAATAATTATAATTACGTTAAAT
66 GAAATCATTATAATTAATAATTATAATTACATTAAAT
23199741 TATATTCAAT
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
106 49 0.49
107 50 0.51
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (106 bp):
GAAGGTTTATTAAAACATTATATCCTTTCCAAAAGGATATTAACTTCCATGTTTTAATATTTAAC
GAAATCATTATAATTAATAATTATAATTACATTAAATAAGT
Found at i:23202456 original size:16 final size:16
Alignment explanation
Indices: 23202435--23202470 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23202425 AAATAATCCC
*
23202435 AAAATTACAAGTCTCA
1 AAAATTAAAAGTCTCA
23202451 AAAATTAAAAGTCTCA
1 AAAATTAAAAGTCTCA
23202467 AAAA
1 AAAA
23202471 CACTTTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.58, C:0.14, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAATTAAAAGTCTCA
Found at i:23204054 original size:23 final size:23
Alignment explanation
Indices: 23204017--23204074 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 23
23204007 TAAACTTGAT
23204017 TAAAAAAAT-AA-AATAAACGAA-
1 TAAAAAAATAAATAATAAA-GAAC
23204038 TAAAAAAATAAATAATAAAGAAC
1 TAAAAAAATAAATAATAAAGAAC
*
23204061 TAACAAAATTAAAT
1 TAA-AAAAATAAAT
23204075 TAGGGAATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 9 0.28
22 5 0.16
23 9 0.28
24 9 0.28
ACGTcount: A:0.72, C:0.05, G:0.03, T:0.19
Consensus pattern (23 bp):
TAAAAAAATAAATAATAAAGAAC
Found at i:23205810 original size:21 final size:21
Alignment explanation
Indices: 23205786--23205829 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
23205776 CTCTTTCACA
**
23205786 TCTTCAACATGGACTTCCTCC
1 TCTTCAACATCAACTTCCTCC
23205807 TCTTCAACATCAACTTCCTCC
1 TCTTCAACATCAACTTCCTCC
23205828 TC
1 TC
23205830 AACAGCAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.41, G:0.05, T:0.34
Consensus pattern (21 bp):
TCTTCAACATCAACTTCCTCC
Found at i:23205831 original size:18 final size:18
Alignment explanation
Indices: 23205804--23205844 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
23205794 ATGGACTTCC
* *
23205804 TCCTCTTCAACATCAACT
1 TCCTCCTCAACAGCAACT
*
23205822 TCCTCCTCAACAGCAAGT
1 TCCTCCTCAACAGCAACT
23205840 TCCTC
1 TCCTC
23205845 TTGACCAGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.41, G:0.05, T:0.29
Consensus pattern (18 bp):
TCCTCCTCAACAGCAACT
Found at i:23218438 original size:17 final size:17
Alignment explanation
Indices: 23218416--23218454 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
23218406 AAAATATACA
23218416 AATATCAAAGTTTTATT
1 AATATCAAAGTTTTATT
23218433 AATATCAAAGTTTTATT
1 AATATCAAAGTTTTATT
23218450 AATAT
1 AATAT
23218455 GATTATCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (17 bp):
AATATCAAAGTTTTATT
Found at i:23218643 original size:15 final size:15
Alignment explanation
Indices: 23218623--23218652 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
23218613 GTTACGTAGC
23218623 ACAAAAATAGTTTGG
1 ACAAAAATAGTTTGG
23218638 ACAAAAATAGTTTGG
1 ACAAAAATAGTTTGG
23218653 CACATAGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (15 bp):
ACAAAAATAGTTTGG
Found at i:23224616 original size:14 final size:15
Alignment explanation
Indices: 23224592--23224622 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23224582 GAGTGTTTTG
23224592 AAAGCATAAAAATAA
1 AAAGCATAAAAATAA
23224607 AAAG-ATAAAAATAA
1 AAAGCATAAAAATAA
23224621 AA
1 AA
23224623 TAAAGTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAGCATAAAAATAA
Found at i:23240837 original size:18 final size:18
Alignment explanation
Indices: 23240781--23240838 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 18
23240771 AAAAAAAGAG
* *
23240781 GAAAAAAAAAACAAAGTAA
1 GAAAAAAAAGA-AAAGAAA
*
23240800 TAAGAAAAAGAGAAAGAGAAA
1 GAA-AAAAA-AGAAA-AGAAA
23240821 GAAAAAAAAGAAAAGAAA
1 GAAAAAAAAGAAAAGAAA
23240839 ATTTTGATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
18 5 0.16
19 7 0.22
20 12 0.38
21 8 0.25
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (18 bp):
GAAAAAAAAGAAAAGAAA
Found at i:23260011 original size:13 final size:14
Alignment explanation
Indices: 23259977--23260015 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
23259967 TATCTCTTTT
*
23259977 TCTTCCTTTTCATC
1 TCTTTCTTTTCATC
*
23259991 TTTTTCTTTTC-TC
1 TCTTTCTTTTCATC
23260004 TCTTTCTTTTCA
1 TCTTTCTTTTCA
23260016 CTTTCTTTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Found at i:23260030 original size:31 final size:28
Alignment explanation
Indices: 23259995--23260051 Score: 78
Period size: 31 Copynumber: 1.9 Consensus size: 28
23259985 TTCATCTTTT
*
23259995 TCTTTTCTCTCTTTCTTTTCACTTTCTTTGC
1 TCTTTTCTCTC-AT-TTTTC-CTTTCTTTGC
23260026 TCTTTTCTCTCATTTTTCCTTTCTTT
1 TCTTTTCTCTCATTTTTCCTTTCTTT
23260052 TTTCAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 5 0.20
30 1 0.04
31 11 0.44
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.67
Consensus pattern (28 bp):
TCTTTTCTCTCATTTTTCCTTTCTTTGC
Found at i:23270878 original size:10 final size:10
Alignment explanation
Indices: 23270863--23270887 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23270853 TCAATGAATA
23270863 CACTTGTATT
1 CACTTGTATT
23270873 CACTTGTATT
1 CACTTGTATT
23270883 CACTT
1 CACTT
23270888 AAGCACGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.48
Consensus pattern (10 bp):
CACTTGTATT
Found at i:23272210 original size:17 final size:18
Alignment explanation
Indices: 23272185--23272224 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
23272175 GTCACATGAA
23272185 TTAAATTAATTTT-TGGT
1 TTAAATTAATTTTATGGT
*
23272202 TTAATTTAATTTTATGG-
1 TTAAATTAATTTTATGGT
23272219 TTAAAT
1 TTAAAT
23272225 ATTAAACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (18 bp):
TTAAATTAATTTTATGGT
Found at i:23274259 original size:18 final size:17
Alignment explanation
Indices: 23274212--23274261 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
23274202 TTATTTTAGA
23274212 TATTTT-TCATGCATTT
1 TATTTTGTCATGCATTT
* *
23274228 T-TATTGTCCCTGCATTT
1 TATTTTGT-CATGCATTT
23274245 TATTTTGTCATTGCATT
1 TATTTTGTCA-TGCATT
23274262 CCTTTTGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
15 3 0.12
16 2 0.08
17 10 0.38
18 11 0.42
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.58
Consensus pattern (17 bp):
TATTTTGTCATGCATTT
Found at i:23276429 original size:13 final size:14
Alignment explanation
Indices: 23276400--23276429 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
23276390 TTCATTACAT
23276400 TGACATTTAACCTC
1 TGACATTTAACCTC
23276414 TGACATTTAA-CTC
1 TGACATTTAACCTC
23276427 TGA
1 TGA
23276430 TTGCATTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.37
Consensus pattern (14 bp):
TGACATTTAACCTC
Found at i:23281221 original size:17 final size:18
Alignment explanation
Indices: 23281199--23281234 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23281189 ATAGGTACAT
23281199 AGCTAG-ATGCAACCACA
1 AGCTAGAATGCAACCACA
*
23281216 AGCTAGAATGCAGCCACA
1 AGCTAGAATGCAACCACA
23281234 A
1 A
23281235 CAAACTGCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.42, C:0.28, G:0.19, T:0.11
Consensus pattern (18 bp):
AGCTAGAATGCAACCACA
Found at i:23283742 original size:22 final size:21
Alignment explanation
Indices: 23283717--23283764 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
23283707 ATAATCTGTT
*
23283717 TCATCTCAATTCTATTTTCATA
1 TCATCTC-ATTCTAGTTTCATA
* *
23283739 TCATTCTCATTTTAGTTTCATT
1 TCA-TCTCATTCTAGTTTCATA
23283761 TCAT
1 TCAT
23283765 AATCAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 17 0.77
23 4 0.18
ACGTcount: A:0.23, C:0.21, G:0.02, T:0.54
Consensus pattern (21 bp):
TCATCTCATTCTAGTTTCATA
Found at i:23288571 original size:18 final size:18
Alignment explanation
Indices: 23288540--23288575 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23288530 TTGCCTTTGC
*
23288540 TACTGGCACCACCTCGAG
1 TACTGCCACCACCTCGAG
*
23288558 TACTGCCACGACCTCGAG
1 TACTGCCACCACCTCGAG
23288576 CTACAGAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.39, G:0.22, T:0.17
Consensus pattern (18 bp):
TACTGCCACCACCTCGAG
Found at i:23290560 original size:4 final size:4
Alignment explanation
Indices: 23290551--23290584 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
23290541 TGTCAAGTTG
23290551 AATA AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
23290585 AATAAGCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:23290994 original size:22 final size:21
Alignment explanation
Indices: 23290969--23291016 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
23290959 TTAATCTGTT
*
23290969 TCATCTCAATTCTATTTTCATA
1 TCATCTC-ATTCTAGTTTCATA
* *
23290991 TCATTCTCATTTTAGTTTCATT
1 TCA-TCTCATTCTAGTTTCATA
23291013 TCAT
1 TCAT
23291017 AACCAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 17 0.77
23 4 0.18
ACGTcount: A:0.23, C:0.21, G:0.02, T:0.54
Consensus pattern (21 bp):
TCATCTCATTCTAGTTTCATA
Found at i:23292013 original size:3 final size:3
Alignment explanation
Indices: 23292005--23292045 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
23291995 TTTTACTTTT
*
23292005 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA A-A ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23292046 CTTATATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:23297563 original size:41 final size:41
Alignment explanation
Indices: 23297516--23297596 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
23297506 AGAGAAAGCG
23297516 CAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCA
1 CAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCA
*
23297557 CAAGGATAAGAAGAACAAGAGTAAAGAGGAAGGCAAGCGC
1 CAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGC
23297597 CCAAAGAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.52, C:0.12, G:0.32, T:0.04
Consensus pattern (41 bp):
CAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCA
Found at i:23298480 original size:41 final size:41
Alignment explanation
Indices: 23298434--23298517 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
23298424 TGAAGAGAAA
*
23298434 GCGCAAGGATAAGAAGAACAAGAGTAAAGAGGAAGGCAAGC
1 GCGCAAGGACAAGAAGAACAAGAGTAAAGAGGAAGGCAAGC
23298475 GCGCAAGGACAAGAAGAACAAGAGTAAAGAGGAAGGCAAGC
1 GCGCAAGGACAAGAAGAACAAGAGTAAAGAGGAAGGCAAGC
23298516 GC
1 GC
23298518 CCAAAGAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.48, C:0.14, G:0.35, T:0.04
Consensus pattern (41 bp):
GCGCAAGGACAAGAAGAACAAGAGTAAAGAGGAAGGCAAGC
Found at i:23298660 original size:17 final size:17
Alignment explanation
Indices: 23298638--23298671 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23298628 TTACATTTTT
23298638 ATTTGTCACTGCATTTG
1 ATTTGTCACTGCATTTG
* *
23298655 ATTTGTTAGTGCATTTG
1 ATTTGTCACTGCATTTG
23298672 CATTATAGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.12, G:0.21, T:0.50
Consensus pattern (17 bp):
ATTTGTCACTGCATTTG
Found at i:23298968 original size:921 final size:921
Alignment explanation
Indices: 23297187--23299024 Score: 3516
Period size: 921 Copynumber: 2.0 Consensus size: 921
23297177 GAGAAAGAAG
* *
23297187 AAGGAGATGAGTAGGAGATGAAGGAAAGGAAGAGGAACCTGAAGAGAAAAACCCTGAAGAAGAGT
1 AAGGAGATGAGAAGGAGATGAAGGAAAGGAAGAGGAACCTGAAGAGAAAAACCCTGAAGAAGAGC
23297252 AAAAAGAGAAGAAGGACGATGCCCCGACATATTTTGAGGCAAAAATTATCGACACACCTACAAGT
66 AAAAAGAGAAGAAGGACGATGCCCCGACATATTTTGAGGCAAAAATTATCGACACACCTACAAGT
23297317 GTGGGGGCATCTAGTGAAGACGTGACTCCACCTGAAGCGAGTCAGGTTGAGGCAGTTACCAACAG
131 GTGGGGGCATCTAGTGAAGACGTGACTCCACCTGAAGCGAGTCAGGTTGAGGCAGTTACCAACAG
23297382 CGCAGAGGATTTTAATCTGCTAGCCATTGTGCCTTATGTGGCACCGCTCGCTGAGGTGGAGTCAC
196 CGCAGAGGATTTTAATCTGCTAGCCATTGTGCCTTATGTGGCACCGCTCGCTGAGGTGGAGTCAC
*
23297447 CTCTTTACATAAGGCACAATGGTTAGAGGATTAAAATCCTCTGCGCTGTTGGTAACTGAAGAGAA
261 CTCTTTACATAAGGCACAATGGCTAGAGGATTAAAATCCTCTGCGCTGTTGGTAACTGAAGAGAA
*
23297512 AGCGCAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCACAAGGATAAGAAGAACAAGA
326 AGCGCAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCACAAGGACAAGAAGAACAAGA
23297577 GTAAAGAGGAAGGCAAGCGCCCAAAGAAAAAGAAGAAGAAAGCCAAAGCAGCCACTTCATCGGCT
391 GTAAAGAGGAAGGCAAGCGCCCAAAGAAAAAGAAGAAGAAAGCCAAAGCAGCCACTTCATCGGCT
*
23297642 GCTGAACAACAATGAGTTAGTTTTACTTTTCTGTAGTTAGTTGCATGCATCTTATTTAGTTGTCA
456 GCTGAACAACAATGAGTTAGTTTTACTTTTCAGTAGTTAGTTGCATGCATCTTATTTAGTTGTCA
*
23297707 TTACATTTTTATTTGTTACTGCATTTGAGTTGTTAGTGCAGTTGCATTATAGTTGCATTTCCATT
521 TTACATTTTTATTTGTCACTGCATTTGAGTTGTTAGTGCAGTTGCATTATAGTTGCATTTCCATT
*
23297772 CTTATATGTATAGTATTGTCAGTGCATTGGGGACAATGCAGACATTAAGTTTGGGGGGATCTTGT
586 CTTATATGTATAGTATTGTCAGTGCATTAGGGACAATGCAGACATTAAGTTTGGGGGGATCTTGT
23297837 GTGAAATGGAAATGCGATTGCACCCACATATTTGAAAAATTACTTGTTTCTTTAGTCAATGAAAG
651 GTGAAATGGAAATGCGATTGCACCCACATATTTGAAAAATTACTTGTTTCTTTAGTCAATGAAAG
* *
23297902 TATGCAAAGTTTCAACAAAAATGTGACCATAATTTTTATTTTTATGCGTAATTCTTGAATTGTTT
716 TATGCAAAGTTTCAACAAAAATGTGACCACAATTTTTATTTTTATGCGTAATTCTTAAATTGTTT
23297967 GGAATGCTGATATATGAATTGGGTGAATATGAATGAATATTGAACCTTCTATTTTTGGATGAATG
781 GGAATGCTGATATATGAATTGGGTGAATATGAATGAATATTGAACCTTCTATTTTTGGATGAATG
23298032 ATTGGAATTGCTTTAGTAATGAATGGATAGTATCAACCCTTGAATCTTGAACTAACTTACCAATT
846 ATTGGAATTGCTTTAGTAATGAATGGATAGTATCAACCCTTGAATCTTGAACTAACTTACCAATT
23298097 GCAGCGAAGGA
911 GCAGCGAAGGA
23298108 AAGGAGATGAGAAGGAGATGAAGGAAAGGAAGAGGAACCTGAAGAGAAAAACCCTGAAGAAGAGC
1 AAGGAGATGAGAAGGAGATGAAGGAAAGGAAGAGGAACCTGAAGAGAAAAACCCTGAAGAAGAGC
23298173 AAAAAGAGAAGAAGGACGATGCCCCGACATATTTTGAGGCAAAAATTATCGACACACCTACAAGT
66 AAAAAGAGAAGAAGGACGATGCCCCGACATATTTTGAGGCAAAAATTATCGACACACCTACAAGT
23298238 GTGGGGGCATCTAGTGAAGACGTGACTCCACCTGAAGCGAGTCAGGTTGAGGCAGTTACCAACAG
131 GTGGGGGCATCTAGTGAAGACGTGACTCCACCTGAAGCGAGTCAGGTTGAGGCAGTTACCAACAG
*
23298303 CGTAGAGGATTTTAATCCT-CTAGCCATTGTGCCTTATGTGGCACCGCTCGCTGAGGTGGAGTCA
196 CGCAGAGGATTTTAAT-CTGCTAGCCATTGTGCCTTATGTGGCACCGCTCGCTGAGGTGGAGTCA
23298367 CCTCTTTACATAAGGCACAATGGCTAGAGGATTAAAATCCTCTGCGCTGTTGGTAACTGAAGAGA
260 CCTCTTTACATAAGGCACAATGGCTAGAGGATTAAAATCCTCTGCGCTGTTGGTAACTGAAGAGA
* *
23298432 AAGCGCAAGGATAAGAAGAACAAGAGTAAAGAGGAAGGCAAGCGCGCAAGGACAAGAAGAACAAG
325 AAGCGCAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCACAAGGACAAGAAGAACAAG
23298497 AGTAAAGAGGAAGGCAAGCGCCCAAAGAAAAAGAAGAAGAAAGCCAAAGCAGCCACTTCATCGGC
390 AGTAAAGAGGAAGGCAAGCGCCCAAAGAAAAAGAAGAAGAAAGCCAAAGCAGCCACTTCATCGGC
23298562 TGCTGAACAACAATGAGTTAGTTTTACTTTTCAGTAGTTAGTTGCATGCATCTTATTTAGTTGTC
455 TGCTGAACAACAATGAGTTAGTTTTACTTTTCAGTAGTTAGTTGCATGCATCTTATTTAGTTGTC
* *
23298627 ATTACATTTTTATTTGTCACTGCATTTGATTTGTTAGTGCATTTGCATTATAGTTGCATTTCCAT
520 ATTACATTTTTATTTGTCACTGCATTTGAGTTGTTAGTGCAGTTGCATTATAGTTGCATTTCCAT
23298692 TCTTATATGTATAGTATTGTCAGTGCATTAGGGACAATGCAGACATTAAGTTTGGGGGGATCTTG
585 TCTTATATGTATAGTATTGTCAGTGCATTAGGGACAATGCAGACATTAAGTTTGGGGGGATCTTG
23298757 TGTGAAATGGAAATGCGATTGCACCCACATATTTGAAAAATTACTTGTTTCTTTAGTCAATGAAA
650 TGTGAAATGGAAATGCGATTGCACCCACATATTTGAAAAATTACTTGTTTCTTTAGTCAATGAAA
23298822 GTATGCAAAGTTTCAACAAAAATGTGACCACAATTTTTATTTTTATGCGTAATTCTTAAATTGTT
715 GTATGCAAAGTTTCAACAAAAATGTGACCACAATTTTTATTTTTATGCGTAATTCTTAAATTGTT
*
23298887 TGGAATGCTGATATGTGAATTGGGTGAATATGAATGAATATTGAACCTTCTATTTTTGGATGAAT
780 TGGAATGCTGATATATGAATTGGGTGAATATGAATGAATATTGAACCTTCTATTTTTGGATGAAT
*
23298952 GATTGGAATTGCTTTAGTAATGAATGGATAGTATCAACCCTTTAATCTTGAACTAACTTACCAAT
845 GATTGGAATTGCTTTAGTAATGAATGGATAGTATCAACCCTTGAATCTTGAACTAACTTACCAAT
23299017 TGCAGCGA
910 TGCAGCGA
23299025 CACTGTACTA
Statistics
Matches: 900, Mismatches: 16, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
921 898 1.00
922 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (921 bp):
AAGGAGATGAGAAGGAGATGAAGGAAAGGAAGAGGAACCTGAAGAGAAAAACCCTGAAGAAGAGC
AAAAAGAGAAGAAGGACGATGCCCCGACATATTTTGAGGCAAAAATTATCGACACACCTACAAGT
GTGGGGGCATCTAGTGAAGACGTGACTCCACCTGAAGCGAGTCAGGTTGAGGCAGTTACCAACAG
CGCAGAGGATTTTAATCTGCTAGCCATTGTGCCTTATGTGGCACCGCTCGCTGAGGTGGAGTCAC
CTCTTTACATAAGGCACAATGGCTAGAGGATTAAAATCCTCTGCGCTGTTGGTAACTGAAGAGAA
AGCGCAAGGATAAGAAGAACAAGAGAAAAGAGGAAGGCAAGCGCACAAGGACAAGAAGAACAAGA
GTAAAGAGGAAGGCAAGCGCCCAAAGAAAAAGAAGAAGAAAGCCAAAGCAGCCACTTCATCGGCT
GCTGAACAACAATGAGTTAGTTTTACTTTTCAGTAGTTAGTTGCATGCATCTTATTTAGTTGTCA
TTACATTTTTATTTGTCACTGCATTTGAGTTGTTAGTGCAGTTGCATTATAGTTGCATTTCCATT
CTTATATGTATAGTATTGTCAGTGCATTAGGGACAATGCAGACATTAAGTTTGGGGGGATCTTGT
GTGAAATGGAAATGCGATTGCACCCACATATTTGAAAAATTACTTGTTTCTTTAGTCAATGAAAG
TATGCAAAGTTTCAACAAAAATGTGACCACAATTTTTATTTTTATGCGTAATTCTTAAATTGTTT
GGAATGCTGATATATGAATTGGGTGAATATGAATGAATATTGAACCTTCTATTTTTGGATGAATG
ATTGGAATTGCTTTAGTAATGAATGGATAGTATCAACCCTTGAATCTTGAACTAACTTACCAATT
GCAGCGAAGGA
Found at i:23302869 original size:24 final size:23
Alignment explanation
Indices: 23302842--23302907 Score: 78
Period size: 25 Copynumber: 2.7 Consensus size: 23
23302832 CAATTAAAAA
23302842 AGTCATCTGTTAGAAAAATAAATT
1 AGTCATCTGTTA-AAAAATAAATT
*
23302866 AGTCATTTCTATTAAAAAATAAATT
1 AGTCA--TCTGTTAAAAAATAAATT
* *
23302891 AATCATATGTTAAAAAA
1 AGTCATCTGTTAAAAAA
23302908 AATTAATTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
23 10 0.28
24 5 0.14
25 15 0.42
26 6 0.17
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.35
Consensus pattern (23 bp):
AGTCATCTGTTAAAAAATAAATT
Found at i:23304033 original size:105 final size:106
Alignment explanation
Indices: 23303769--23304155 Score: 501
Period size: 105 Copynumber: 3.6 Consensus size: 106
23303759 AATAGTTTCA
* * * * *
23303769 CTATGTATGCAATATTGCTAAATCTAGTTCTAGCTATCATTTTGGAATCATATGTTATTTTGTAA
1 CTATGTATGCAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGT-A
* * *
23303834 TATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAGTCC-T
65 TATAAAACTATGGTAAATGCAATGGTATTGGACTG--C--AG-CCAT
*
23303880 CTATGTATACAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
1 CTATGTATGCAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
*
23303945 ATAAATCTATGGTAAATGCAATGGTATTGGACTG-AGCCAT
66 ATAAAACTATGGTAAATGCAATGGTATTGGACTGCAGCCAT
*
23303985 CTATGTATGTAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
1 CTATGTATGCAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
* *
23304050 ATAAAACTATGATAAATG-ATATGGTATTGGACTGCACTTAGTCAT
66 ATAAAACTATGGTAAATGCA-ATGGTATTGGACTG--C--AGCCAT
** * *
23304095 CTATGTATGTTGTATGGTTAAATCTAGTTCTAGCTATCTTTTTGGAATCATTTATGATTTT
1 CTATGTATGCAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTT
23304156 TTTGATTTTT
Statistics
Matches: 252, Mismatches: 17, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
104 3 0.01
105 96 0.38
110 96 0.38
111 57 0.23
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.42
Consensus pattern (106 bp):
CTATGTATGCAGTATGGTTAAATCTAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
ATAAAACTATGGTAAATGCAATGGTATTGGACTGCAGCCAT
Found at i:23321320 original size:26 final size:26
Alignment explanation
Indices: 23321291--23321354 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
23321281 TGGAGAAACT
23321291 TGTCCAGAATTATCACTATATGAACA
1 TGTCCAGAATTATCACTATATGAACA
* * * *
23321317 TGTCCAGAGTTGTCGCTATATGAGCA
1 TGTCCAGAATTATCACTATATGAACA
*
23321343 TGTCCAAAATTA
1 TGTCCAGAATTA
23321355 CGTCCAGAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (26 bp):
TGTCCAGAATTATCACTATATGAACA
Done.