Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 86 of 163
Found at i:24334841 original size:52 final size:52
Alignment explanation
Indices: 24334758--24335007 Score: 356
Period size: 52 Copynumber: 4.8 Consensus size: 52
24334748 GACCTCCTGT
* * * **
24334758 TCCGTAAAAGAGTTCATGTACTCACGATGACACTTAGTCATTAGACCTCACCA
1 TCCGTAAAGGA-TTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
* * * *
24334811 TCCGTAAAGGATTCATATACTCACGATGACACTTAGCCATCGGACCTTATAA
1 TCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
** *
24334863 TCTATAAAGGATTCATTTACTCACGATGACACTTAGTCATCGGACCTCATAA
1 TCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
* *
24334915 TCTGTAAATGATTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
1 TCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
*
24334967 TCCGTAAAGGATTCATTTACTCACGATGACACTTAATCATC
1 TCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATC
24335008 CGATCCTTTT
Statistics
Matches: 178, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
52 168 0.94
53 10 0.06
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (52 bp):
TCCGTAAAGGATTCATTTACTCACGATGACACTTAGTCATCAGACCTCATAA
Found at i:24348355 original size:87 final size:87
Alignment explanation
Indices: 24348209--24348428 Score: 316
Period size: 87 Copynumber: 2.5 Consensus size: 87
24348199 AGGATAACCT
* * *
24348209 GACACGATCATTCTGATTTTGATTTGCTGACGAGCGTAAACGTTCTGACCGAGCTCCTGCATGTG
1 GACACGATCATTCTGATTCTGATTTGCTGACGAGCGTAAACATTCTAACCGAGCTCCTGCATGTG
**
24348274 TTGTAAACTCGAGTTATTATGA
66 TTACAAACTCGAGTTATTATGA
* *
24348296 GACACGATCGTTCTGATTCTGATTTGCTGACGAGCGTAAACATTTTAACCGAGCTCCTGCATGTG
1 GACACGATCATTCTGATTCTGATTTGCTGACGAGCGTAAACATTCTAACCGAGCTCCTGCATGTG
** *
24348361 TTACGGACTCGGGTTATTATGA
66 TTACAAACTCGAGTTATTATGA
* *
24348383 GACACGATCATTCTGATTCTGATTAT-TTGACAAGCGTAAACATTCT
1 GACACGATCATTCTGATTCTGATT-TGCTGACGAGCGTAAACATTCT
24348429 GGACTTACGT
Statistics
Matches: 118, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
87 117 0.99
88 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (87 bp):
GACACGATCATTCTGATTCTGATTTGCTGACGAGCGTAAACATTCTAACCGAGCTCCTGCATGTG
TTACAAACTCGAGTTATTATGA
Found at i:24352858 original size:36 final size:36
Alignment explanation
Indices: 24352811--24352882 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
24352801 TTCAGAATAA
24352811 GGTTTAACTTTTAGCTCTAAATGTAACCAAACAATG
1 GGTTTAACTTTTAGCTCTAAATGTAACCAAACAATG
*
24352847 GGTTTAGCTTTTAGCTCTAAATGTAACCAAACAATG
1 GGTTTAACTTTTAGCTCTAAATGTAACCAAACAATG
24352883 CCTTAGGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (36 bp):
GGTTTAACTTTTAGCTCTAAATGTAACCAAACAATG
Found at i:24357892 original size:30 final size:30
Alignment explanation
Indices: 24357858--24357944 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 30
24357848 CATGTATTTC
24357858 GTGACAAAGAAGTCAGCCACACGTTTCTTT
1 GTGACAAAGAAGTCAGCCACACGTTTCTTT
* * * *
24357888 GTGAC-----A-T-A-CCTCATGTAT-TTC
1 GTGACAAAGAAGTCAGCCACACGTTTCTTT
24357909 GTGACAAAGAAGTCAGCCACACGTTTCTTT
1 GTGACAAAGAAGTCAGCCACACGTTTCTTT
24357939 GTGACA
1 GTGACA
24357945 TAGATCATGT
Statistics
Matches: 40, Mismatches: 8, Indels: 18
0.61 0.12 0.27
Matches are distributed among these distances:
21 7 0.17
22 7 0.17
23 1 0.03
24 1 0.03
25 1 0.03
26 1 0.03
27 1 0.03
28 1 0.03
29 7 0.17
30 13 0.32
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (30 bp):
GTGACAAAGAAGTCAGCCACACGTTTCTTT
Found at i:24357913 original size:51 final size:51
Alignment explanation
Indices: 24357837--24357958 Score: 226
Period size: 51 Copynumber: 2.4 Consensus size: 51
24357827 AGGCGTTGTC
24357837 GTGACATACCTCATGTATTTCGTGACAAAGAAGTCAGCCACACGTTTCTTT
1 GTGACATACCTCATGTATTTCGTGACAAAGAAGTCAGCCACACGTTTCTTT
24357888 GTGACATACCTCATGTATTTCGTGACAAAGAAGTCAGCCACACGTTTCTTT
1 GTGACATACCTCATGTATTTCGTGACAAAGAAGTCAGCCACACGTTTCTTT
**
24357939 GTGACATAGATCATGTATTT
1 GTGACATACCTCATGTATTT
24357959 GGTGTCATCG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (51 bp):
GTGACATACCTCATGTATTTCGTGACAAAGAAGTCAGCCACACGTTTCTTT
Found at i:24358231 original size:59 final size:59
Alignment explanation
Indices: 24358149--24358266 Score: 218
Period size: 59 Copynumber: 2.0 Consensus size: 59
24358139 GTCTCTTACA
*
24358149 CACTCACGAAGTACGTTAGCTAACCTTTAGGCCTCAATCGGCCTTAAAGACAATAAAAC
1 CACTCACGAAGTACGTTAACTAACCTTTAGGCCTCAATCGGCCTTAAAGACAATAAAAC
*
24358208 CACTCACGAAGTACGTTAACTAACCTTTAGGCCTCAATCGGCCTTAAAGATAATAAAAC
1 CACTCACGAAGTACGTTAACTAACCTTTAGGCCTCAATCGGCCTTAAAGACAATAAAAC
24358267 AATCTTTTTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 57 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.23
Consensus pattern (59 bp):
CACTCACGAAGTACGTTAACTAACCTTTAGGCCTCAATCGGCCTTAAAGACAATAAAAC
Found at i:24365972 original size:18 final size:17
Alignment explanation
Indices: 24365949--24366012 Score: 78
Period size: 18 Copynumber: 3.8 Consensus size: 17
24365939 GCAACATCTG
24365949 CTTCTTTTTCTTCCTTCT
1 CTTCTTTTTCTT-CTTCT
24365967 CTTCTTTTTCTTCTTCT
1 CTTCTTTTTCTTCTTCT
*
24365984 -TT-TCTTTCTTCTTCT
1 CTTCTTTTTCTTCTTCT
*
24365999 TTTCTTTCTTCTTC
1 CTTCTTT-TTCTTC
24366013 CTCTACCTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
15 12 0.29
16 4 0.10
17 7 0.17
18 18 0.44
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
CTTCTTTTTCTTCTTCT
Found at i:24365980 original size:3 final size:3
Alignment explanation
Indices: 24365949--24366012 Score: 62
Period size: 3 Copynumber: 21.3 Consensus size: 3
24365939 GCAACATCTG
* *
24365949 CTT CTT TTT CTT CCTT C-T CTT CTT TTT CTT CTT CTT -TT CTTT CTT
1 CTT CTT CTT CTT -CTT CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT
24365994 CTT CTT -TT CTTT CTT CTT C
1 CTT CTT CTT C-TT CTT CTT C
24366013 CTCTACCTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
2 6 0.12
3 36 0.71
4 9 0.18
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
CTT
Found at i:24365984 original size:15 final size:15
Alignment explanation
Indices: 24365949--24366012 Score: 87
Period size: 15 Copynumber: 4.3 Consensus size: 15
24365939 GCAACATCTG
*
24365949 CTTCTTTTTCTTCCTT
1 CTTC-TTTTCTTTCTT
24365965 C-TCTTCTT-TTTCTT
1 CTTCTT-TTCTTTCTT
24365979 CTTCTTTTCTTTCTT
1 CTTCTTTTCTTTCTT
24365994 CTTCTTTTCTTTCTT
1 CTTCTTTTCTTTCTT
24366009 CTTC
1 CTTC
24366013 CTCTACCTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.23
15 33 0.75
16 1 0.02
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (15 bp):
CTTCTTTTCTTTCTT
Found at i:24373835 original size:29 final size:24
Alignment explanation
Indices: 24373772--24373820 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
24373762 ACAGGTTAAG
24373772 AGTAAAAATTGTCAATGCAAATGT
1 AGTAAAAATTGTCAATGCAAATGT
*
24373796 AGTAAAAATTGTCAGTGCAAATGT
1 AGTAAAAATTGTCAATGCAAATGT
24373820 A
1 A
24373821 ATGTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (24 bp):
AGTAAAAATTGTCAATGCAAATGT
Found at i:24376631 original size:16 final size:16
Alignment explanation
Indices: 24376610--24376640 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24376600 TTGTGGATCT
24376610 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
24376626 CATTTTATCTTTATT
1 CATTTTACCTTTATT
24376641 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:24378957 original size:17 final size:17
Alignment explanation
Indices: 24378913--24378959 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
24378903 CTGTAGTATA
* * *
24378913 ATTGTCCCTACATTTTT
1 ATTGTCACTGCATTCTT
24378930 ATTGTCACTGCATTCTT
1 ATTGTCACTGCATTCTT
*
24378947 ATTGTCGCTGCAT
1 ATTGTCACTGCAT
24378960 ATACATTGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.17, C:0.23, G:0.13, T:0.47
Consensus pattern (17 bp):
ATTGTCACTGCATTCTT
Found at i:24380086 original size:37 final size:37
Alignment explanation
Indices: 24380000--24380107 Score: 108
Period size: 37 Copynumber: 2.9 Consensus size: 37
24379990 TTACTACTAA
* * * * *
24380000 TGTCGCTGCATTATCACTTCTAGATTGCGCCCAAAAC
1 TGTCGCCGCATGAGCACTTCCAGATTGCACCCAAAAC
* * *
24380037 TGTCGTCACATGAGCACTTCCAGATTGTACCCAAAAC
1 TGTCGCCGCATGAGCACTTCCAGATTGCACCCAAAAC
** * *
24380074 TGTCGCCGCATGAATATTTCCAGAATGCACCCAA
1 TGTCGCCGCATGAGCACTTCCAGATTGCACCCAA
24380108 GATTGTCGTT
Statistics
Matches: 56, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
37 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (37 bp):
TGTCGCCGCATGAGCACTTCCAGATTGCACCCAAAAC
Found at i:24381059 original size:16 final size:16
Alignment explanation
Indices: 24381038--24381068 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24381028 GTTGGGATCC
24381038 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
24381054 CATTTTATCTTTATT
1 CATTTTACCTTTATT
24381069 TTCACAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:24384691 original size:22 final size:21
Alignment explanation
Indices: 24384663--24384723 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
24384653 AAAGCCCCCT
24384663 TCACTTCCTCATTTTTCATCTC
1 TCACTTCCTCATTTTTC-TCTC
*
24384685 TCACTTCACACATTTTT-TCTC
1 TCACTTC-CTCATTTTTCTCTC
* *
24384706 TCATCTTTCTCTTTTTTC
1 TCA-CTTCCTCATTTTTC
24384724 CTTTTAGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 14 0.44
22 10 0.31
23 8 0.25
ACGTcount: A:0.13, C:0.33, G:0.00, T:0.54
Consensus pattern (21 bp):
TCACTTCCTCATTTTTCTCTC
Found at i:24389361 original size:27 final size:27
Alignment explanation
Indices: 24389331--24389404 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
24389321 AGCTTACTAG
*
24389331 ACCAACTAGCGAACCCCAACTAGCCAA
1 ACCAACTGGCGAACCCCAACTAGCCAA
* * *
24389358 ACCATCTGGCGAACCTCAACTCGCCAA
1 ACCAACTGGCGAACCCCAACTAGCCAA
24389385 ACCAACTGGCGAA-CCCAACT
1 ACCAACTGGCGAACCCCAACT
24389405 TGCAATGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 6 0.15
27 35 0.85
ACGTcount: A:0.35, C:0.41, G:0.14, T:0.11
Consensus pattern (27 bp):
ACCAACTGGCGAACCCCAACTAGCCAA
Found at i:24389402 original size:13 final size:13
Alignment explanation
Indices: 24389332--24389404 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
24389322 GCTTACTAGA
24389332 CCAACTAGCGAACC
1 CCAACTAGCGAA-C
* *
24389346 CCAACTAGCCAAA
1 CCAACTAGCGAAC
* *
24389359 CCATCTGGCGAAC
1 CCAACTAGCGAAC
* * *
24389372 CTCAACTCGCCAAA
1 C-CAACTAGCGAAC
*
24389386 CCAACTGGCGAAC
1 CCAACTAGCGAAC
24389399 CCAACT
1 CCAACT
24389405 TGCAATGAAT
Statistics
Matches: 45, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
13 25 0.56
14 20 0.44
ACGTcount: A:0.34, C:0.41, G:0.14, T:0.11
Consensus pattern (13 bp):
CCAACTAGCGAAC
Found at i:24391264 original size:20 final size:19
Alignment explanation
Indices: 24391236--24391317 Score: 87
Period size: 19 Copynumber: 4.3 Consensus size: 19
24391226 TAAAAATATA
*
24391236 TATAAAT-TTTAGAATTTT
1 TATAAATATTTTGAATTTT
*
24391254 TATAAATATTTTGAAATTT
1 TATAAATATTTTGAATTTT
* *
24391273 AAAAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
24391292 T-TAAAATTATTTTGAACTTTT
1 TAT-AAA-TATTTTGAA-TTTT
24391313 TATAA
1 TATAA
24391318 TTTGTTGAGA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
18 7 0.13
19 28 0.54
20 9 0.17
21 7 0.13
22 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.05, T:0.52
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:24391319 original size:20 final size:19
Alignment explanation
Indices: 24391241--24391314 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
24391231 ATATATATAA
*
24391241 ATTTTAGAATTTTTATAAAT
1 ATTTT-GAATTTTTAAAAAT
* *
24391261 ATTTTGAAATTTAAAAAAT
1 ATTTTGAATTTTTAAAAAT
*
24391280 ATTTTGAATTTTTTAAAATT
1 ATTTTGAA-TTTTTAAAAAT
24391300 ATTTTGAACTTTTTA
1 ATTTTGAA-TTTTTA
24391315 TAATTTGTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
19 19 0.41
20 27 0.59
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAAAT
Found at i:24396598 original size:29 final size:30
Alignment explanation
Indices: 24396556--24396614 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
24396546 TATGATTTAA
24396556 TGTGTAATTGTATACAT-AAACTTTGATTT
1 TGTGTAATTGTATACATGAAACTTTGATTT
* *
24396585 TGTGTAATTTTATACATGAAATTTTGATTT
1 TGTGTAATTGTATACATGAAACTTTGATTT
24396615 GATCCAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.31, C:0.05, G:0.14, T:0.51
Consensus pattern (30 bp):
TGTGTAATTGTATACATGAAACTTTGATTT
Found at i:24399636 original size:17 final size:17
Alignment explanation
Indices: 24399616--24399662 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
24399606 CAATTATTGC
24399616 TTTTAGAAATATATTAA
1 TTTTAGAAATATATTAA
*
24399633 TTTTAGGAGATAT-TTAA
1 TTTTA-GAAATATATTAA
24399650 -TTTA-AAATATATT
1 TTTTAGAAATATATT
24399663 TATGGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.19
15 2 0.08
16 4 0.15
17 9 0.35
18 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
TTTTAGAAATATATTAA
Found at i:24399795 original size:17 final size:17
Alignment explanation
Indices: 24399775--24399821 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
24399765 CAATTATTGC
24399775 TTTTAGAAATATATTAA
1 TTTTAGAAATATATTAA
*
24399792 TTTTAGGAGATAT-TTAA
1 TTTTA-GAAATATATTAA
24399809 -TTTA-AAATATATT
1 TTTTAGAAATATATT
24399822 TATGGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 5 0.19
15 2 0.08
16 4 0.15
17 9 0.35
18 6 0.23
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
TTTTAGAAATATATTAA
Found at i:24399828 original size:159 final size:159
Alignment explanation
Indices: 24399539--24399851 Score: 626
Period size: 159 Copynumber: 2.0 Consensus size: 159
24399529 CATCACGCAA
24399539 TCAAAGCAATAACACTTGGGCAGTTAAATACATGCAGGATTTAATTGATATAAATGTTTTTAAAA
1 TCAAAGCAATAACACTTGGGCAGTTAAATACATGCAGGATTTAATTGATATAAATGTTTTTAAAA
24399604 GTCAATTATTGCTTTTAGAAATATATTAATTTTAGGAGATATTTAATTTAAAATATATTTATGGT
66 GTCAATTATTGCTTTTAGAAATATATTAATTTTAGGAGATATTTAATTTAAAATATATTTATGGT
24399669 ATTAGGGTTTAGGAGTTTTTTTTTTAGAG
131 ATTAGGGTTTAGGAGTTTTTTTTTTAGAG
24399698 TCAAAGCAATAACACTTGGGCAGTTAAATACATGCAGGATTTAATTGATATAAATGTTTTTAAAA
1 TCAAAGCAATAACACTTGGGCAGTTAAATACATGCAGGATTTAATTGATATAAATGTTTTTAAAA
24399763 GTCAATTATTGCTTTTAGAAATATATTAATTTTAGGAGATATTTAATTTAAAATATATTTATGGT
66 GTCAATTATTGCTTTTAGAAATATATTAATTTTAGGAGATATTTAATTTAAAATATATTTATGGT
24399828 ATTAGGGTTTAGGAGTTTTTTTTT
131 ATTAGGGTTTAGGAGTTTTTTTTT
24399852 GTTTAGAGTC
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
159 154 1.00
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (159 bp):
TCAAAGCAATAACACTTGGGCAGTTAAATACATGCAGGATTTAATTGATATAAATGTTTTTAAAA
GTCAATTATTGCTTTTAGAAATATATTAATTTTAGGAGATATTTAATTTAAAATATATTTATGGT
ATTAGGGTTTAGGAGTTTTTTTTTTAGAG
Found at i:24409102 original size:52 final size:52
Alignment explanation
Indices: 24409019--24409261 Score: 369
Period size: 52 Copynumber: 4.7 Consensus size: 52
24409009 GTAAATAAAA
* * *
24409019 AAAAGGGTCTGATGATTATGTGTCATTGTGAGTATATGAATCCTTTATGGATT
1 AAAA-GGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
24409072 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* * *
24409124 AAAAGGTCCGATGACTATGTGTCATCGTGAGAATATGATTCCTTTAAGGATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
* *** *
24409176 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGATTCCTTCGCGAATT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
*
24409228 AAGAGGTCCGATGACTATGTGTCATCGTGAGTAT
1 AAAAGGTCCGATGACTATGTGTCATCGTGAGTAT
24409262 TAAATGGAAT
Statistics
Matches: 178, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
52 174 0.98
53 4 0.02
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.34
Consensus pattern (52 bp):
AAAAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTATGGATT
Found at i:24410092 original size:21 final size:21
Alignment explanation
Indices: 24410044--24410095 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
24410034 GGAGTTTTTA
24410044 GTATCGGTAGAAGCATGACAT
1 GTATCGGTAGAAGCATGACAT
* * *
24410065 GTTTCGGTAGAAGTTAT-ACTT
1 GTATCGGTAGAAG-CATGACAT
24410086 GTATCGGTAG
1 GTATCGGTAG
24410096 TATTGTCTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.33
Consensus pattern (21 bp):
GTATCGGTAGAAGCATGACAT
Found at i:24411225 original size:13 final size:13
Alignment explanation
Indices: 24411207--24411232 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24411197 AGTAATTTCT
24411207 TTTGAGTTATTAG
1 TTTGAGTTATTAG
24411220 TTTGAGTTATTAG
1 TTTGAGTTATTAG
24411233 GATTCCATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.23, T:0.54
Consensus pattern (13 bp):
TTTGAGTTATTAG
Found at i:24412343 original size:31 final size:31
Alignment explanation
Indices: 24412290--24412363 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
24412280 AAATTTTGTT
24412290 ATTTTAG-T-CTCTTGTTTAATAAGTTGTCA
1 ATTTTAGTTACTCTTGTTTAATAAGTTGTCA
24412319 ATTTTAGTTACTCTT-TTTAGATAAGTTGTCA
1 ATTTTAGTTACTCTTGTTTA-ATAAGTTGTCA
*
24412350 ATTTTAGTCACTCT
1 ATTTTAGTTACTCT
24412364 ACCGTTAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
29 7 0.17
30 5 0.12
31 29 0.71
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTTTAGTTACTCTTGTTTAATAAGTTGTCA
Found at i:24413062 original size:22 final size:22
Alignment explanation
Indices: 24413014--24413062 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 22
24413004 TAACTATAAA
24413014 ATAACTAAAATTAACAATTTGTC
1 ATAA-TAAAATTAACAATTTGTC
*
24413037 -TAATAAAATTGACAATTT-TGC
1 ATAATAAAATTAACAATTTGT-C
24413058 ATAAT
1 ATAAT
24413063 GAAAGTGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 15 0.65
22 7 0.30
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (22 bp):
ATAATAAAATTAACAATTTGTC
Found at i:24415872 original size:257 final size:257
Alignment explanation
Indices: 24415416--24416444 Score: 2058
Period size: 257 Copynumber: 4.0 Consensus size: 257
24415406 CCTATTGGAA
24415416 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
1 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
24415481 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
66 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
24415546 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
131 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
24415611 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
196 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
24415673 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
1 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
24415738 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
66 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
24415803 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
131 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
24415868 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
196 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
24415930 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
1 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
24415995 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
66 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
24416060 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
131 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
24416125 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
196 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
24416187 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
1 TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
24416252 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
66 ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
24416317 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
131 AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
24416382 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
196 ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
24416444 T
1 T
24416445 AATCTTTTAA
Statistics
Matches: 772, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
257 772 1.00
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (257 bp):
TTTTTAATTTTCTTTTGTATACTCAAATTGAATCGTCTTGTAATTCGGTGTACATTTAAAAATTA
ATTTTGTCAATAGTTAGGGAGTAGCAGTGAATATTTCTTGTTAAAACTTCAATTATTACTTTATA
AACTGTAATTCTCTTTTGGATTAATACGTAATTTTCTTTTAAATTTATCTAAAAATATTTAGTTA
ATATCTAAATTTTTTTAATACTTGCTTTAATTAAACACATTGTTTGAATTTGTTAATAGCGT
Found at i:24416512 original size:31 final size:32
Alignment explanation
Indices: 24416477--24416537 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
24416467 AGTTTGTCTT
* *
24416477 TGAACTT-ATCCAAAATTATCTAGTTGATACA
1 TGAACTTGATCAAAAAGTATCTAGTTGATACA
* *
24416508 TGAACTTGTTTAAAAAGTATCTAGTTGATA
1 TGAACTTGATCAAAAAGTATCTAGTTGATA
24416538 TTTGAATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 7 0.28
32 18 0.72
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (32 bp):
TGAACTTGATCAAAAAGTATCTAGTTGATACA
Found at i:24416591 original size:19 final size:19
Alignment explanation
Indices: 24416563--24416607 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
24416553 TAACTTATAC
* *
24416563 TTTTTTAAAATTTATTT-A
1 TTTTTAAAAATATATTTCA
24416581 TATTTTAAAAATATATTTCA
1 T-TTTTAAAAATATATTTCA
24416601 TTTTTAA
1 TTTTTAA
24416608 TTTATGTACG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 20 0.87
20 2 0.09
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTAAAAATATATTTCA
Found at i:24417024 original size:30 final size:32
Alignment explanation
Indices: 24416988--24417047 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
24416978 TTAATTTCTA
24416988 CCAATCAGATTATG-C-CATGTATATAAAAGG
1 CCAATCAGATTATGTCACATGTATATAAAAGG
* * *
24417018 CCAATCATATTGTGTCACATGTATTTAAAA
1 CCAATCAGATTATGTCACATGTATATAAAA
24417048 ATATTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 12 0.48
31 1 0.04
32 12 0.48
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (32 bp):
CCAATCAGATTATGTCACATGTATATAAAAGG
Found at i:24418604 original size:22 final size:22
Alignment explanation
Indices: 24418561--24418605 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24418551 AAGTGTTGAT
* * *
24418561 CAGAGAGCACCAAAGTGCTAAA
1 CAGAGAGCACAAAACTACTAAA
*
24418583 CAGAGAGCACAAAACTATTAAA
1 CAGAGAGCACAAAACTACTAAA
24418605 C
1 C
24418606 TCGTACAAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.22, G:0.18, T:0.11
Consensus pattern (22 bp):
CAGAGAGCACAAAACTACTAAA
Found at i:24432808 original size:74 final size:74
Alignment explanation
Indices: 24432698--24432841 Score: 180
Period size: 74 Copynumber: 1.9 Consensus size: 74
24432688 GTGTGATCAT
* * * * * * *
24432698 TGGGCGTATTTTTAAATGATTTTCGAAATAACACACGGCTTGGACACACGGGCGTGTTATAAACC
1 TGGGCGTATTTTTAAATAAGTTTCAAAATAACACACGGCCTAGACACACAGGCGTGTTACAAACC
24432763 GTGTGCAAC
66 GTGTGCAAC
* * * * *
24432772 TGGGTGTATTTTTAAATAAGTTTCAAAATGATACACGGCCTAGAGACACAGGCGTGTTCCAAACC
1 TGGGCGTATTTTTAAATAAGTTTCAAAATAACACACGGCCTAGACACACAGGCGTGTTACAAACC
24432837 GTGTG
66 GTGTG
24432842 ATCACTAGAG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
74 58 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (74 bp):
TGGGCGTATTTTTAAATAAGTTTCAAAATAACACACGGCCTAGACACACAGGCGTGTTACAAACC
GTGTGCAAC
Found at i:24433455 original size:8 final size:7
Alignment explanation
Indices: 24433444--24433544 Score: 59
Period size: 8 Copynumber: 13.7 Consensus size: 7
24433434 ATTTTAATAA
24433444 TATTATAT
1 TATT-TAT
24433452 TA-TTAT
1 TATTTAT
24433458 TATTTAGT
1 TATTTA-T
*
24433466 TATTTGT
1 TATTTAT
24433473 T-TATTATT
1 TAT-TTA-T
24433481 TATTTAT
1 TATTTAT
24433488 TATATATAT
1 TAT-T-TAT
24433497 TA-TTA-
1 TATTTAT
24433502 TATTTATT
1 TATTTA-T
24433510 TATTTATT
1 TATTTA-T
24433518 TATTTATT
1 TATTTA-T
*
24433526 CTCTTTAT
1 -TATTTAT
24433534 TA-TTAT
1 TATTTAT
24433540 TATTT
1 TATTT
24433545 GTTTTAGTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 25
0.73 0.04 0.24
Matches are distributed among these distances:
5 2 0.03
6 17 0.22
7 16 0.21
8 31 0.40
9 11 0.14
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (7 bp):
TATTTAT
Found at i:24433458 original size:11 final size:10
Alignment explanation
Indices: 24433444--24433540 Score: 71
Period size: 11 Copynumber: 9.7 Consensus size: 10
24433434 ATTTTAATAA
24433444 TATTATATTAT
1 TATTAT-TTAT
24433455 TATTATTTAGT
1 TATTATTTA-T
*
24433466 TATTTGTTTAT
1 TA-TTATTTAT
24433477 TATTTATTTAT
1 TA-TTATTTAT
24433488 TATATATATTAT
1 TAT-TAT-TTAT
24433500 TA-TATTTA-
1 TATTATTTAT
24433508 T-TTATTTA-
1 TATTATTTAT
24433516 T-TTATTTAT
1 TATTATTTAT
* *
24433525 T-CTCTTTAT
1 TATTATTTAT
24433534 TATTATT
1 TATTATT
24433541 ATTTGTTTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 15
0.78 0.06 0.16
Matches are distributed among these distances:
8 15 0.21
9 11 0.15
10 10 0.14
11 25 0.34
12 12 0.16
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TATTATTTAT
Found at i:24433485 original size:4 final size:4
Alignment explanation
Indices: 24433457--24433525 Score: 79
Period size: 4 Copynumber: 17.2 Consensus size: 4
24433447 TATATTATTA
* * *
24433457 TTAT TTAG TTAT TTGT TTA- TTAT TTAT TTA- TTAT ATAT ATTAT TATAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT T-TAT
24433505 TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT T
24433526 CTCTTTATTA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
3 6 0.11
4 42 0.76
5 7 0.13
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:24433535 original size:37 final size:37
Alignment explanation
Indices: 24433444--24433544 Score: 114
Period size: 37 Copynumber: 2.6 Consensus size: 37
24433434 ATTTTAATAA
*
24433444 TATTATATTATTATTATTTAGTTATTTGTTTATTATTTATT
1 TATTATA-TA-TATTA-TTA-TTATTTATTTATTATTTATT
24433485 TATTATATATATTATTA-TATTTATTTATTTATTTATT
1 TATTATATATATTATTATTATTTATTTA-TTATTTATT
* * *
24433522 TATTCTCTTTATTATTATTATTT
1 TATTATATATATTATTATTATTT
24433545 GTTTTAGTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
36 9 0.17
37 23 0.43
38 8 0.15
39 5 0.09
40 2 0.04
41 7 0.13
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (37 bp):
TATTATATATATTATTATTATTTATTTATTATTTATT
Found at i:24437476 original size:19 final size:20
Alignment explanation
Indices: 24437454--24437510 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 20
24437444 TTTAATAATA
24437454 TTATATTATTATTATTTA-G
1 TTATATTATTATTATTTATG
*
24437473 TTAT-TTGTTTATTATTTATTTG
1 TTATATT-ATTATTATTTA--TG
24437495 TTATATATATTATTAT
1 TTATAT-TATTATTAT
24437511 ATTTATTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 2 0.07
19 14 0.47
22 5 0.17
23 8 0.27
24 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTATATTATTATTATTTATG
Found at i:24437493 original size:4 final size:4
Alignment explanation
Indices: 24437465--24437529 Score: 62
Period size: 4 Copynumber: 16.2 Consensus size: 4
24437455 TATATTATTA
* * * *
24437465 TTAT TTAG TTAT TTGT TTA- TTAT TTAT TT-G TTAT ATAT ATTAT TATAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT T-TAT
24437513 TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT T
24437530 CTCTTTATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
3 5 0.10
4 37 0.76
5 7 0.14
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (4 bp):
TTAT
Found at i:24437521 original size:36 final size:36
Alignment explanation
Indices: 24437459--24437546 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 36
24437449 TAATATTATA
* *
24437459 TTATTATTATTTAGTTATTTGTTTA-TTATTTATT-TGT
1 TTATTATTA-TTA--TATTTATTTATTTATTTATTCTCT
24437496 TATATATATTATTATATTTATTTATTTATTTATTCTCT
1 T-TAT-TATTATTATATTTATTTATTTATTTATTCTCT
24437534 TTATTATTATTAT
1 TTATTATTATTAT
24437547 TTGTTTTAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
36 18 0.40
37 13 0.29
38 9 0.20
39 5 0.11
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.68
Consensus pattern (36 bp):
TTATTATTATTATATTTATTTATTTATTTATTCTCT
Found at i:24437539 original size:33 final size:33
Alignment explanation
Indices: 24437454--24437548 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 33
24437444 TTTAATAATA
*
24437454 TTATATTATTAT-TAT-TTAGTTATTTGTTTATTAT
1 TTAT-TTATTATATATATTA-TTA-TTATTTATTAT
*
24437488 TTATTTGTTATATATATTATTA-TATTTATTTAT
1 TTATTTATTATATATATTATTATTATTTA-TTAT
* * *
24437521 TTATTTATTCTCTTTATTATTATTATTT
1 TTATTTATTATATATATTATTATTATTT
24437549 GTTTTAGTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
32 5 0.10
33 28 0.55
34 15 0.29
35 3 0.06
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.68
Consensus pattern (33 bp):
TTATTTATTATATATATTATTATTATTTATTAT
Found at i:24438518 original size:15 final size:15
Alignment explanation
Indices: 24438498--24438531 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
24438488 ACCATTAAGC
24438498 CCAAACCCAATTGAA
1 CCAAACCCAATTGAA
*
24438513 CCAAACCTAATTGAA
1 CCAAACCCAATTGAA
24438528 CCAA
1 CCAA
24438532 GTCCAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.32, G:0.06, T:0.15
Consensus pattern (15 bp):
CCAAACCCAATTGAA
Found at i:24438577 original size:7 final size:7
Alignment explanation
Indices: 24438565--24438612 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
24438555 CCGTTGACTA
24438565 ACCGTTG
1 ACCGTTG
24438572 ACCGTTG
1 ACCGTTG
*
24438579 ATCG--G
1 ACCGTTG
24438584 -CCGTTG
1 ACCGTTG
24438590 ACCGTTG
1 ACCGTTG
*
24438597 ACTGTTG
1 ACCGTTG
24438604 ACCGTTG
1 ACCGTTG
24438611 AC
1 AC
24438613 TTTTTTCGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
4 2 0.06
5 1 0.03
6 1 0.03
7 30 0.88
ACGTcount: A:0.15, C:0.27, G:0.29, T:0.29
Consensus pattern (7 bp):
ACCGTTG
Found at i:24438577 original size:18 final size:19
Alignment explanation
Indices: 24438554--24438599 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
24438544 ACCAAGTCAA
24438554 ACCGTTGACT-AACCGTTG
1 ACCGTTGACTCAACCGTTG
**
24438572 ACCGTTGA-TCGGCCGTTG
1 ACCGTTGACTCAACCGTTG
24438590 ACCGTTGACT
1 ACCGTTGACT
24438600 GTTGACCGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 22 0.92
19 1 0.04
ACGTcount: A:0.17, C:0.28, G:0.26, T:0.28
Consensus pattern (19 bp):
ACCGTTGACTCAACCGTTG
Found at i:24455840 original size:17 final size:17
Alignment explanation
Indices: 24455818--24455859 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
24455808 ATTCTCATGT
*
24455818 TATGTGATCATATGGTA
1 TATGTGATCATATGATA
24455835 TATGTGATCATATGATA
1 TATGTGATCATATGATA
24455852 TATGTGAT
1 TATGTGAT
24455860 GTTTGCATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (17 bp):
TATGTGATCATATGATA
Found at i:24456595 original size:16 final size:16
Alignment explanation
Indices: 24456574--24456604 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24456564 TTCACTATTA
*
24456574 TGTCTTTTATATTTTT
1 TGTCTTTCATATTTTT
24456590 TGTCTTTCATATTTT
1 TGTCTTTCATATTTT
24456605 GCATGCATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.10, G:0.06, T:0.71
Consensus pattern (16 bp):
TGTCTTTCATATTTTT
Found at i:24459845 original size:42 final size:42
Alignment explanation
Indices: 24459786--24459872 Score: 156
Period size: 42 Copynumber: 2.1 Consensus size: 42
24459776 TTCAAAACAG
*
24459786 TGAGACAACTTTGAAAAATCAGCAAGCATCAATTCATGGCCT
1 TGAGACAACTTTAAAAAATCAGCAAGCATCAATTCATGGCCT
*
24459828 TGAGACAACTTTAAAAAATCAGCAAGCATCATTTCATGGCCT
1 TGAGACAACTTTAAAAAATCAGCAAGCATCAATTCATGGCCT
24459870 TGA
1 TGA
24459873 AAATCAAATC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (42 bp):
TGAGACAACTTTAAAAAATCAGCAAGCATCAATTCATGGCCT
Found at i:24462464 original size:18 final size:17
Alignment explanation
Indices: 24462439--24462472 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
24462429 TATTCCTTTT
24462439 CTAACTTTTATTGATTA
1 CTAACTTTTATTGATTA
*
24462456 CTAATCTTTTGTTGATT
1 CTAA-CTTTTATTGATT
24462473 TTCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.56
Consensus pattern (17 bp):
CTAACTTTTATTGATTA
Found at i:24472229 original size:36 final size:35
Alignment explanation
Indices: 24472167--24472234 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
24472157 ATTCCAAAAA
24472167 TAATATTATTTTAATAGTTTAATATTAAATTTAGTT
1 TAATATTATTTTAATAGTTTAATATT-AATTTAGTT
*
24472203 TAATATTATTTTAATAGTATT-TTATTAATTTA
1 TAATATTATTTTAATAGT-TTAATATTAATTTA
24472235 ATATTAAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 6 0.20
36 22 0.73
37 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (35 bp):
TAATATTATTTTAATAGTTTAATATTAATTTAGTT
Found at i:24472239 original size:11 final size:11
Alignment explanation
Indices: 24472167--24472241 Score: 50
Period size: 11 Copynumber: 6.8 Consensus size: 11
24472157 ATTCCAAAAA
*
24472167 TAATATTATTT
1 TAATATTAATT
24472178 TAATAGTTTAATAT
1 TAATA--TTAAT-T
*
24472192 TAA-ATTTAGTT
1 TAATA-TTAATT
*
24472203 TAATATTATTT
1 TAATATTAATT
*
24472214 TAATAGT-ATT
1 TAATATTAATT
24472224 T--TATTAATT
1 TAATATTAATT
24472233 TAATATTAA
1 TAATATTAA
24472242 AGTGATTATC
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 26 0.51
12 6 0.12
13 5 0.10
14 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (11 bp):
TAATATTAATT
Found at i:24472339 original size:37 final size:36
Alignment explanation
Indices: 24472252--24472342 Score: 112
Period size: 37 Copynumber: 2.5 Consensus size: 36
24472242 AGTGATTATC
* * * *
24472252 TTTATATTAAATTTCATTTAATGTTTATCTTGTAGA
1 TTTATATTAAATTTAATCTAATATTTATCTTGTAAA
24472288 TTTAATATTAAATTTAATCTAATATTTATCTTGATAAA
1 TTT-ATATTAAATTTAATCTAATATTTATCTTG-TAAA
24472326 TATTATATT-AATTTAAT
1 T-TTATATTAAATTTAAT
24472343 ATTAAAGTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
36 3 0.06
37 34 0.71
38 9 0.19
39 2 0.04
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.54
Consensus pattern (36 bp):
TTTATATTAAATTTAATCTAATATTTATCTTGTAAA
Found at i:24476667 original size:16 final size:16
Alignment explanation
Indices: 24476626--24476658 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
24476616 ATTCCTTCAT
24476626 TTCAAAGGCGAAGTGA
1 TTCAAAGGCGAAGTGA
24476642 TTCAAAGGCGAAGTGA
1 TTCAAAGGCGAAGTGA
24476658 T
1 T
24476659 CTGAAGGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.21
Consensus pattern (16 bp):
TTCAAAGGCGAAGTGA
Found at i:24479171 original size:21 final size:21
Alignment explanation
Indices: 24479128--24479178 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
24479118 TGCATATTTG
**
24479128 TACCGATACAAGTGACAGTTC
1 TACCGATACAAGTGACACCTC
*
24479149 TACCGATACAAGTGACTCCTC
1 TACCGATACAAGTGACACCTC
*
24479170 TATCGATAC
1 TACCGATAC
24479179 TAAAAACTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (21 bp):
TACCGATACAAGTGACACCTC
Found at i:24481036 original size:20 final size:20
Alignment explanation
Indices: 24481000--24481044 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
24480990 TCATTAAGCT
*
24481000 TTAATTAATCTCTTTTAATC
1 TTAATTAAGCTCTTTTAATC
*
24481020 TTAATTAAGC-CTATTTACTC
1 TTAATTAAGCTCT-TTTAATC
24481040 TTAAT
1 TTAAT
24481045 ACAAATCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.31, C:0.16, G:0.02, T:0.51
Consensus pattern (20 bp):
TTAATTAAGCTCTTTTAATC
Found at i:24486358 original size:24 final size:24
Alignment explanation
Indices: 24486330--24486384 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
24486320 ACAATCGATT
24486330 CATTTTATATTACAATTGCACTGA
1 CATTTTATATTACAATTGCACTGA
* * *
24486354 CATTTTGTATTACATTTTCACTGA
1 CATTTTATATTACAATTGCACTGA
24486378 CAATTTT
1 C-ATTTT
24486385 TACTCTTAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 22 0.81
25 5 0.19
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.47
Consensus pattern (24 bp):
CATTTTATATTACAATTGCACTGA
Found at i:24492494 original size:24 final size:25
Alignment explanation
Indices: 24492467--24492519 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
24492457 TGAAGCAGAG
* *
24492467 GAAGAAGAAAGAA-AAGAAGAAGTA
1 GAAGAAGAAAGAACAAAAAGAAGAA
*
24492491 GAAG-AGAAGGAACAAAAAGAAGAA
1 GAAGAAGAAAGAACAAAAAGAAGAA
24492515 GAAGA
1 GAAGA
24492520 TGTTGCCACG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 7 0.29
24 17 0.71
ACGTcount: A:0.66, C:0.02, G:0.30, T:0.02
Consensus pattern (25 bp):
GAAGAAGAAAGAACAAAAAGAAGAA
Found at i:24492953 original size:17 final size:17
Alignment explanation
Indices: 24492920--24492964 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
24492910 TTATTTTTTT
*
24492920 ATTTTTTTT-TCATTAC
1 ATTTTTTTTGTCACTAC
*
24492936 ATTTTTTTTGTCCCTAC
1 ATTTTTTTTGTCACTAC
24492953 ATTTTATTTTGT
1 ATTTT-TTTTGT
24492965 TTTCATAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.36
17 10 0.40
18 6 0.24
ACGTcount: A:0.16, C:0.13, G:0.04, T:0.67
Consensus pattern (17 bp):
ATTTTTTTTGTCACTAC
Found at i:24495177 original size:24 final size:24
Alignment explanation
Indices: 24495150--24495204 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
24495140 ACAATCGATT
24495150 CATTTTATATTACAGTTGCACTGA
1 CATTTTATATTACAGTTGCACTGA
* *
24495174 CATTTTGTATTACATTTGCACTGA
1 CATTTTATATTACAGTTGCACTGA
24495198 CAATTTT
1 C-ATTTT
24495205 TACTCTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.45
Consensus pattern (24 bp):
CATTTTATATTACAGTTGCACTGA
Found at i:24497489 original size:1 final size:1
Alignment explanation
Indices: 24497483--24497510 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
24497473 AATAGGATTG
24497483 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
24497511 TTTGCTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:24500254 original size:17 final size:17
Alignment explanation
Indices: 24500222--24500256 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24500212 TATTTTGTAG
*
24500222 AAGAAGAAAAGGGAAAT
1 AAGAAGAAAAAGGAAAT
*
24500239 AAGAAGAAAAATGAAAT
1 AAGAAGAAAAAGGAAAT
24500256 A
1 A
24500257 TTTTTTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.09
Consensus pattern (17 bp):
AAGAAGAAAAAGGAAAT
Found at i:24502396 original size:18 final size:18
Alignment explanation
Indices: 24502375--24502422 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
24502365 CTTTTGGTTT
24502375 AAAAGTGTTTTTTATGTC
1 AAAAGTGTTTTTTATGTC
* *
24502393 AAAAATGCTTTTTATGTC
1 AAAAGTGTTTTTTATGTC
*
24502411 GAAAGTGGTTTT
1 AAAAGT-GTTTT
24502423 AAAAGCACTA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (18 bp):
AAAAGTGTTTTTTATGTC
Found at i:24502621 original size:30 final size:31
Alignment explanation
Indices: 24502585--24502652 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
24502575 CATTTAACAC
* *
24502585 AACAGTCACTCAAC-TT-TGAAAATGTGAAAA
1 AACAGTCACT-AACATTATCAAAAAGTGAAAA
*
24502615 AACAGTCACTAACATTATCAAAAAGTGACAA
1 AACAGTCACTAACATTATCAAAAAGTGAAAA
24502646 AACAGTC
1 AACAGTC
24502653 GCTGATGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 12 0.36
31 18 0.55
ACGTcount: A:0.49, C:0.19, G:0.12, T:0.21
Consensus pattern (31 bp):
AACAGTCACTAACATTATCAAAAAGTGAAAA
Found at i:24516827 original size:6 final size:7
Alignment explanation
Indices: 24516795--24516832 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
24516785 GATAAAAACT
*
24516795 AAAAAAA
1 AAAAAAG
24516802 AACAAAAG
1 AA-AAAAG
24516810 AAAAAAG
1 AAAAAAG
24516817 AAAAAAG
1 AAAAAAG
24516824 AAAAAAG
1 AAAAAAG
24516831 AA
1 AA
24516833 CTGAATATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.87, C:0.03, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:24518698 original size:33 final size:33
Alignment explanation
Indices: 24518656--24518723 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
24518646 AGATGGAAAT
24518656 ATTCGTGTTGAATTGGTAGAATATAAATAATAC
1 ATTCGTGTTGAATTGGTAGAATATAAATAATAC
24518689 ATTCGTGTTGAATTGGTAGAATATAAATAATAC
1 ATTCGTGTTGAATTGGTAGAATATAAATAATAC
24518722 AT
1 AT
24518724 ATCATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.37
Consensus pattern (33 bp):
ATTCGTGTTGAATTGGTAGAATATAAATAATAC
Found at i:24536285 original size:15 final size:16
Alignment explanation
Indices: 24536256--24536290 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24536246 TAATGATTTT
*
24536256 TTAATTTTTATTATTG
1 TTAATTTTTATTATTA
24536272 TTAATTTTTA-TATTA
1 TTAATTTTTATTATTA
24536287 TTAA
1 TTAA
24536291 AATGACTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTAATTTTTATTATTA
Found at i:24539584 original size:9 final size:9
Alignment explanation
Indices: 24539572--24539596 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
24539562 TGAGAAATAT
24539572 ATTAATCGA
1 ATTAATCGA
24539581 ATTAATCGA
1 ATTAATCGA
24539590 ATTAATC
1 ATTAATC
24539597 AAACTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.36
Consensus pattern (9 bp):
ATTAATCGA
Found at i:24541250 original size:23 final size:23
Alignment explanation
Indices: 24541224--24541270 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
24541214 CAATTCAATG
24541224 GTAATAGAGTTGATTTGGGAGTA
1 GTAATAGAGTTGATTTGGGAGTA
24541247 GTAATAGAGTTGATTTGGGAGTA
1 GTAATAGAGTTGATTTGGGAGTA
24541270 G
1 G
24541271 ATTATGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (23 bp):
GTAATAGAGTTGATTTGGGAGTA
Found at i:24542092 original size:31 final size:31
Alignment explanation
Indices: 24542054--24542115 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
24542044 ATTTGTATAG
**
24542054 TAAATTTGTTTTATATAGTAAAAACTTTTTT
1 TAAATTTGTTTTATATAAAAAAAACTTTTTT
*
24542085 TAAATTTGTTTTATATAAAAAAAAGTTTTTT
1 TAAATTTGTTTTATATAAAAAAAACTTTTTT
24542116 AAAAAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (31 bp):
TAAATTTGTTTTATATAAAAAAAACTTTTTT
Found at i:24542529 original size:6 final size:6
Alignment explanation
Indices: 24542518--24542542 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24542508 TTTCTAATGC
24542518 CTGTTG CTGTTG CTGTTG CTGTTG C
1 CTGTTG CTGTTG CTGTTG CTGTTG C
24542543 CCATTTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.32, T:0.48
Consensus pattern (6 bp):
CTGTTG
Found at i:24545413 original size:27 final size:28
Alignment explanation
Indices: 24545375--24545436 Score: 117
Period size: 28 Copynumber: 2.2 Consensus size: 28
24545365 ATATCCTAGG
24545375 ATTTCTTTTCGCAACA-TACATAAACCA
1 ATTTCTTTTCGCAACATTACATAAACCA
24545402 ATTTCTTTTCGCAACATTACATAAACCA
1 ATTTCTTTTCGCAACATTACATAAACCA
24545430 ATTTCTT
1 ATTTCTT
24545437 ATTATATTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 16 0.47
28 18 0.53
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (28 bp):
ATTTCTTTTCGCAACATTACATAAACCA
Found at i:24550804 original size:23 final size:23
Alignment explanation
Indices: 24550740--24550804 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
24550730 TTATTATTTT
* *
24550740 ATGAACATATTCAATTATATGTTC
1 ATGAACATGTTCGATTA-ATGTTC
*
24550764 ATGAACATGTTCGTTTAATGTTC
1 ATGAACATGTTCGATTAATGTTC
* *
24550787 GTGAACATGTTTGATTAA
1 ATGAACATGTTCGATTAA
24550805 GTTAAATGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
23 21 0.60
24 14 0.40
ACGTcount: A:0.32, C:0.11, G:0.15, T:0.42
Consensus pattern (23 bp):
ATGAACATGTTCGATTAATGTTC
Found at i:24557149 original size:59 final size:59
Alignment explanation
Indices: 24557054--24557198 Score: 152
Period size: 59 Copynumber: 2.4 Consensus size: 59
24557044 GAATGTTTGA
* * *
24557054 GGGT-AAAATGGTAATTTTTGAATTTTTCGGGATCAAAAAAGGAATTTTTGGAA-TTCTAG
1 GGGTAAAAAT-GTAATTTTTGAAGTTTTAGGGATCAAAAAAGGAATTTTTAGAAGTTC-AG
* * *
24557113 GGGTAAAAATGTAATTTTTGGAGGTTTTAGGG-TCAAAAATGTAATTTTTAGAAGTTCAG
1 GGGTAAAAATGTAATTTTT-GAAGTTTTAGGGATCAAAAAAGGAATTTTTAGAAGTTCAG
* *
24557172 AGGTCAAAAATATAATTTTTAGAAGTT
1 GGGT-AAAAATGTAATTTTT-GAAGTT
24557199 CGGGGGTCAA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 36 0.50
60 36 0.50
ACGTcount: A:0.36, C:0.04, G:0.23, T:0.37
Consensus pattern (59 bp):
GGGTAAAAATGTAATTTTTGAAGTTTTAGGGATCAAAAAAGGAATTTTTAGAAGTTCAG
Found at i:24557151 original size:30 final size:30
Alignment explanation
Indices: 24557029--24557233 Score: 142
Period size: 30 Copynumber: 6.9 Consensus size: 30
24557019 AATCAAGATA
*
24557029 AAAAATAG-AATTTTT-GAATGTTTGAGGGT-
1 AAAAAT-GTAATTTTTGGAA-GTTTTAGGGTC
* *
24557058 -AAAATGGTAATTTTT-GAATTTTTCGGGATC
1 AAAAAT-GTAATTTTTGGAAGTTTTAGGG-TC
* * *
24557088 AAAAAAGGAATTTTTGGAA-TTCTAGGGGT-
1 AAAAATGTAATTTTTGGAAGTTTTA-GGGTC
*
24557117 AAAAATGTAATTTTTGGAGGTTTTAGGGTC
1 AAAAATGTAATTTTTGGAAGTTTTAGGGTC
* *
24557147 AAAAATGTAATTTTTAGAAG-TTCAGAGGTC
1 AAAAATGTAATTTTTGGAAGTTTTAG-GGTC
* * ***
24557177 AAAAATATAATTTTTAGAAGTTCGGGGGTC
1 AAAAATGTAATTTTTGGAAGTTTTAGGGTC
*
24557207 -AAATTGTAATTTTTGGATAG-TTTAGGG
1 AAAAATGTAATTTTTGGA-AGTTTTAGGG
24557234 ACTTTTAGGG
Statistics
Matches: 140, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
28 12 0.09
29 53 0.38
30 63 0.45
31 12 0.09
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.38
Consensus pattern (30 bp):
AAAAATGTAATTTTTGGAAGTTTTAGGGTC
Found at i:24558342 original size:19 final size:19
Alignment explanation
Indices: 24558320--24558356 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
24558310 TATAATTACT
*
24558320 AAAATAGTTATTAATATTG
1 AAAACAGTTATTAATATTG
24558339 AAAACAGTTATTAATATT
1 AAAACAGTTATTAATATT
24558357 ATTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (19 bp):
AAAACAGTTATTAATATTG
Found at i:24558360 original size:9 final size:9
Alignment explanation
Indices: 24558346--24558406 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
24558336 TTGAAAACAG
24558346 TTATTAATA
1 TTATTAATA
*
24558355 TTATTAGTA
1 TTATTAATA
24558364 TTACTTAATGTGA
1 TTA-TTAA--T-A
*
24558377 TAATTAATA
1 TTATTAATA
*
24558386 TTATGAATA
1 TTATTAATA
*
24558395 ATATTAATA
1 TTATTAATA
24558404 TTA
1 TTA
24558407 ATGATGTTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
9 28 0.70
10 4 0.10
12 5 0.12
13 3 0.08
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (9 bp):
TTATTAATA
Found at i:24559142 original size:35 final size:35
Alignment explanation
Indices: 24559114--24559180 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
24559104 ATTTTCAATT
24559114 CAAAATAAATTCAAATTTAAAATAAATTTAAAAAC
1 CAAAATAAATTCAAATTTAAAATAAATTTAAAAAC
* * *
24559149 CAAAATGATTTCAAATTTAAAATGAA-TTAAAA
1 CAAAATAAATTCAAATTTAAAATAAATTTAAAA
24559181 TTTTAAATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 6 0.21
35 23 0.79
ACGTcount: A:0.60, C:0.07, G:0.03, T:0.30
Consensus pattern (35 bp):
CAAAATAAATTCAAATTTAAAATAAATTTAAAAAC
Found at i:24559187 original size:18 final size:17
Alignment explanation
Indices: 24559110--24559188 Score: 59
Period size: 17 Copynumber: 4.6 Consensus size: 17
24559100 TTTAATTTTC
* * *
24559110 AATTCAAAATAAATTCA
1 AATTTAAAATGAATTAA
*
24559127 AATTTAAAATAAATTTAA
1 AATTTAAAATGAA-TTAA
*** * *
24559145 AAACCAAAATGATTTCA
1 AATTTAAAATGAATTAA
24559162 AATTTAAAATGAATTAA
1 AATTTAAAATGAATTAA
*
24559179 AATTTTAAAT
1 AATTTAAAAT
24559189 TAAAAGTTGG
Statistics
Matches: 47, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
17 36 0.77
18 11 0.23
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (17 bp):
AATTTAAAATGAATTAA
Found at i:24560318 original size:88 final size:89
Alignment explanation
Indices: 24560168--24560407 Score: 322
Period size: 88 Copynumber: 2.7 Consensus size: 89
24560158 TTTATGAAGG
* * * *
24560168 TAGGATTTGATG-TCGAAGCTTCATTTTGCTCTTACTGCAACTTTAGAGAGATAAAGATTTGCTA
1 TAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACT---ACTTTAGAGAGATAAAGACTTGCTA
*
24560232 TCTAACTTTACTGCAACTTCAAGAGGA
63 TCCAACTTTACTGCAACTTCAAGAGGA
*
24560259 TAGGAATTGATGTTTGAAGCTTCATCTCGCTCTTACT-CTTTAGAGAGATAAAGACTTGCTATCC
1 TAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACTTTAGAGAGATAAAGACTTGCTATCC
*
24560323 AACTTTGCTGCAACTTCAAGAGGA
66 AACTTTACTGCAACTTCAAGAGGA
* * *
24560347 TAGGAATTGATGTTTAAAGTTTCATCTTGCTCTTACTACAACTTCAGAGAGATAAAGACTT
1 TAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACT---ACTTTAGAGAGATAAAGACTT
24560408 TTCTCTTTTG
Statistics
Matches: 133, Mismatches: 11, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
88 82 0.62
91 11 0.08
92 40 0.30
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (89 bp):
TAGGAATTGATGTTTGAAGCTTCATCTTGCTCTTACTACTTTAGAGAGATAAAGACTTGCTATCC
AACTTTACTGCAACTTCAAGAGGA
Found at i:24560574 original size:93 final size:96
Alignment explanation
Indices: 24560405--24560840 Score: 488
Period size: 101 Copynumber: 4.4 Consensus size: 96
24560395 GAGATAAAGA
* * *
24560405 CTTTTCTCTTTTGTCTTTTCGCGGTACTGGATCCGCTGTTGCGGTTTTAGATCTTTCCCGTCGTG
1 CTTTTC-CTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTG
*
24560470 TCTTTTGAGGTACACGGT-CCA-T-CTTAGAC
65 TCTTCTGAGGTACACGGTCCCACTACTTAGAC
* *
24560499 CTTTTCCTTTTGTCTTTTTGCGATACTGGATCAGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGT
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGT
*
24560564 CTTCTAAGGTACACGGT-CCACCGTTGCGACTTAGAC
66 CTTCTGAGGTACACGGTCCCA-C--T---ACTTAGAC
* * * * *
24560600 CTTTTCCTTTTGTCTTTTTGGGGCACTGGATCTGCCGTTGTGGTCTTAGATCTTTCCCGTCATGT
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGT
*
24560665 TTTCTGAGGTACACGGTCCGCCATTGCTACTTAGAC
66 CTTCTGAGGTACACGGT-C-CCA---CTACTTAGAC
* * ** *
24560701 CCTTCCCTTTTACCTTTTTGCGGTACTGGATCC-CTCGTTGCGGTCTTAGATCTTTCTCGTCGTG
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGC-CGTTGCGGTCTTAGATCTTTCCCGTCGTG
24560765 TCTTCTGAGGTACACGGTCCGC-CGTTGTGACTTAGAC
65 TCTTCTGAGGTACACGGTCC-CAC----T-ACTTAGAC
*
24560802 CTTTCCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTT
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTT
24560841 ACTACTTAGA
Statistics
Matches: 291, Mismatches: 30, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
93 72 0.25
94 6 0.02
96 1 0.00
97 1 0.00
99 1 0.00
100 4 0.01
101 200 0.69
102 1 0.00
104 4 0.01
106 1 0.00
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.40
Consensus pattern (96 bp):
CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCGTGT
CTTCTGAGGTACACGGTCCCACTACTTAGAC
Found at i:24560610 original size:101 final size:100
Alignment explanation
Indices: 24560492--24560840 Score: 500
Period size: 101 Copynumber: 3.5 Consensus size: 100
24560482 CACGGTCCAT
* *
24560492 CTTAGACCTTTTCCTTTTGTCTTTTTGCGATACTGGATCAGCCGTTGCGGTCTTAGATCTTTCCC
1 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATC-GCCGTTGCGGTCTTAGATCTTTCCC
* *
24560557 GTCGTGTCTTCTAAGGTACACGGTCCACCGTTGCGA
65 GTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGA
* * * *
24560593 CTTAGACCTTTTCCTTTTGTCTTTTTGGGGCACTGGATCTGCCGTTGTGGTCTTAGATCTTTCCC
1 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATC-GCCGTTGCGGTCTTAGATCTTTCCC
* * * *
24560658 GTCATGTTTTCTGAGGTACACGGTCCGCCATTGCTA
65 GTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGA
* ** * *
24560694 CTTAGACCCTTCCCTTTTACCTTTTTGCGGTACTGGATCCCTCGTTGCGGTCTTAGATCTTTCTC
1 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATCGC-CGTTGCGGTCTTAGATCTTTCCC
*
24560759 GTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGTGA
65 GTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGA
24560795 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTT
1 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGAT-CGCCGTT
24560841 ACTACTTAGA
Statistics
Matches: 217, Mismatches: 29, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
100 1 0.00
101 214 0.99
102 2 0.01
ACGTcount: A:0.12, C:0.27, G:0.22, T:0.39
Consensus pattern (100 bp):
CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATCGCCGTTGCGGTCTTAGATCTTTCCCG
TCGTGTCTTCTGAGGTACACGGTCCGCCGTTGCGA
Found at i:24560656 original size:50 final size:50
Alignment explanation
Indices: 24560491--24560654 Score: 136
Period size: 51 Copynumber: 3.2 Consensus size: 50
24560481 ACACGGTCCA
* *
24560491 TCTTAGACCTTTTCCTTTTGTCTTTTTGCGATACTGGATCAGCCGTTGCGG
1 TCTTAGACCTTTTCCTTTTGTCTTTTTGGGACACTGGATCAGCCGTTG-GG
* * ** ** * *
24560542 TCTTAGATCTTTCCCGTCGTGTCTTCTAAGGTACAC-GG-TCCA-CCGTTGCG
1 TCTTAGACCTTTTCC-TTTTGTCTT-TTTGGGACACTGGAT-CAGCCGTTGGG
* * *
24560592 ACTTAGACCTTTTCCTTTTGTCTTTTTGGGGCACTGGATCTGCCGTTGTGG
1 TCTTAGACCTTTTCCTTTTGTCTTTTTGGGACACTGGATCAGCCGTTG-GG
*
24560643 TCTTAGATCTTT
1 TCTTAGACCTTT
24560655 CCCGTCATGT
Statistics
Matches: 83, Mismatches: 23, Indels: 14
0.69 0.19 0.12
Matches are distributed among these distances:
48 6 0.07
49 10 0.12
50 20 0.24
51 31 0.37
52 11 0.13
53 5 0.06
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.41
Consensus pattern (50 bp):
TCTTAGACCTTTTCCTTTTGTCTTTTTGGGACACTGGATCAGCCGTTGGG
Found at i:24560764 original size:202 final size:194
Alignment explanation
Indices: 24560405--24560840 Score: 588
Period size: 202 Copynumber: 2.2 Consensus size: 194
24560395 GAGATAAAGA
* * * *
24560405 CTTTTCTCTTTTGTCTTTTCGCGGTACTGGATCCGCTGTTGCGGTTTTAGATCTTTCCCGTCGTG
1 CTTTTC-CTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATG
* * ** *
24560470 TCTTTTGAGGTACACGGTCCATCTTAGACCTTTTCCTTTTGTCTTTTTGCGATACTGGATCAGCC
65 TCTTTTGAGGTACACGGTCCATCTTAGACCCTTCCCTTTTACCTTTTTGCGATACTGGATCACCC
24560535 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTCTAAGGTACACGGTCCACCGTTGCGACTTAGAC
130 GTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTCTAAGGTACACGGTCCACCGTTGCGACTTAGAC
* * * *
24560600 CTTTTCCTTTTGTCTTTTTGGGGCACTGGATCTGCCGTTGTGGTCTTAGATCTTTCCCGTCATGT
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGT
*
24560665 -TTTCTGAGGTACACGGTCCGCCATTGCTACTTAGACCCTTCCCTTTTACCTTTTTGCGGTACTG
66 CTTT-TGAGGTACACGGT---CCA----T-CTTAGACCCTTCCCTTTTACCTTTTTGCGATACTG
* * * *
24560729 GATC-CCTCGTTGCGGTCTTAGATCTTTCTCGTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGT
122 GATCACC-CGTTGCGGTCTTAGATCTTTCCCGTCGTGTCTTCTAAGGTACACGGTCCACCGTTGC
24560793 GACTTAGAC
186 GACTTAGAC
*
24560802 CTTTCCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTT
1 CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTT
24560841 ACTACTTAGA
Statistics
Matches: 209, Mismatches: 22, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
193 3 0.01
194 64 0.31
195 6 0.03
197 3 0.01
201 2 0.01
202 131 0.63
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.40
Consensus pattern (194 bp):
CTTTTCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTGCGGTCTTAGATCTTTCCCGTCATGT
CTTTTGAGGTACACGGTCCATCTTAGACCCTTCCCTTTTACCTTTTTGCGATACTGGATCACCCG
TTGCGGTCTTAGATCTTTCCCGTCGTGTCTTCTAAGGTACACGGTCCACCGTTGCGACTTAGAC
Found at i:24560916 original size:150 final size:151
Alignment explanation
Indices: 24560681--24560990 Score: 473
Period size: 150 Copynumber: 2.1 Consensus size: 151
24560671 AGGTACACGG
* * * *
24560681 TCCGCCATTGCTACTTAGACCCTTCCCTTTTACCTTTTTGCGGTACTGGATCCCTCGTTGCGGTC
1 TCCGCCGTTACTACTTAGACCCTTCCCTTTTACCTTTTTGAGGTACTGGATCCCTCGTTACGGTC
* * * *
24560746 TTAGATCTTTCTCGTCGTGTCTTCTGAGGTACACGGTCCGCCGTTGTGACTTAGACCTTTCCCTT
66 TTAGATCTTTCTCGTCGTGTCTTCTGAGGTACACGATCCGCCATTGCGACTTAGACCCTTCCCTT
* * *
24560811 TTGTCTTTTTGCGGTACTGGA
131 TTGTCTTTTTACAGTACTAGA
24560832 TCCGCCGTTACTACTTAGACCCTT-CCTTTTACCTTTTTGAGGTACTGGATCCAC-CGTTACGGT
1 TCCGCCGTTACTACTTAGACCCTTCCCTTTTACCTTTTTGAGGTACTGGATCC-CTCGTTACGGT
*
24560895 CTTAGATCTTTC-CTGTCGTGTCTTCTGAGGTACACGATCTGCCATTGCGACTTAGACCCTTCCC
65 CTTAGATCTTTCTC-GTCGTGTCTTCTGAGGTACACGATCCGCCATTGCGACTTAGACCCTTCCC
24560959 TTTTGTCTTTTTACAGTACTAGA
129 TTTTGTCTTTTTACAGTACTAGA
24560982 TCCGCCGTT
1 TCCGCCGTT
24560991 GCGATATTAG
Statistics
Matches: 145, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
149 1 0.01
150 121 0.83
151 23 0.16
ACGTcount: A:0.14, C:0.29, G:0.19, T:0.38
Consensus pattern (151 bp):
TCCGCCGTTACTACTTAGACCCTTCCCTTTTACCTTTTTGAGGTACTGGATCCCTCGTTACGGTC
TTAGATCTTTCTCGTCGTGTCTTCTGAGGTACACGATCCGCCATTGCGACTTAGACCCTTCCCTT
TTGTCTTTTTACAGTACTAGA
Found at i:24560993 original size:50 final size:49
Alignment explanation
Indices: 24560492--24560994 Score: 187
Period size: 50 Copynumber: 10.0 Consensus size: 49
24560482 CACGGTCCAT
* * * * *
24560492 CTTAGACCTTTTCCTTTTGTCTTTTT-GCGATACTGGATCAGCCGTTGCGGT
1 CTTAGACCCTTCCCTTTTGTCTTTTTAG-G-TACTAGATCCGCCGTTGC-GA
* * ** * * * *
24560543 CTTAGATCTTTCCCGTCGTGTCTTCTAAGGTAC-ACGGTCCACCGTTGCGA
1 CTTAGACCCTTCCC-TTTTGTCTTTTTAGGTACTA-GATCCGCCGTTGCGA
* * * * * * * *
24560593 CTTAGACCTTTTCCTTTTGTCTTTTTGGGGCACTGGATCTGCCGTTGTGGT
1 CTTAGACCCTTCCCTTTTGTCTTTTT-AGGTACTAGATCCGCCGTTG-CGA
* * ** * * * *
24560644 CTTAGATCTTTCCCGTCATGT-TTTCTGAGGTAC-ACGGTCCGCCATTGCTA
1 CTTAGACCCTTCCC-TTTTGTCTTT-TTAGGTACTA-GATCCGCCGTTGCGA
** * * *
24560694 CTTAGACCCTTCCCTTTTACCTTTTTGCGGTACTGGATCC-CTCGTTGCGGT
1 CTTAGACCCTTCCCTTTTGTCTTTTT-AGGTACTAGATCCGC-CGTTGC-GA
* * * ** * * * *
24560745 CTTAGATCTTTCTCGTCGTGTCTTCTGAGGTAC-ACGGTCCGCCGTTGTGA
1 CTTAGACCCTTC-CCTTTTGTCTTTTTAGGTACTA-GATCCGCCGTTGCGA
* * * * *
24560795 CTTAGACCTTTCCCTTTTGTCTTTTTGCGGTACTGGATCCGCCGTTACTA
1 CTTAGACCCTTCCCTTTTGTCTTTTT-AGGTACTAGATCCGCCGTTGCGA
** * * * *
24560845 CTTAGACCCTT-CCTTTTACCTTTTTGAGGTACTGGATCCACCGTTACGGT
1 CTTAGACCCTTCCCTTTTGTCTTTTT-AGGTACTAGATCCGCCGTTGC-GA
* * * * * * *
24560895 CTTAGA-TCTTTCCTGTCGTGTCTTCTGAGGTAC-ACGATCTGCCATTGCGA
1 CTTAGACCCTTCCCT-T-TTGTCTTTTTAGGTACTA-GATCCGCCGTTGCGA
*
24560945 CTTAGACCCTTCCCTTTTGTCTTTTTACAGTACTAGATCCGCCGTTGCGA
1 CTTAGACCCTTCCCTTTTGTCTTTTTA-GGTACTAGATCCGCCGTTGCGA
24560995 TATTAGATCT
Statistics
Matches: 320, Mismatches: 105, Indels: 55
0.67 0.22 0.11
Matches are distributed among these distances:
49 64 0.20
50 127 0.40
51 101 0.32
52 27 0.08
53 1 0.00
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.39
Consensus pattern (49 bp):
CTTAGACCCTTCCCTTTTGTCTTTTTAGGTACTAGATCCGCCGTTGCGA
Found at i:24562029 original size:6 final size:6
Alignment explanation
Indices: 24562028--24562069 Score: 66
Period size: 6 Copynumber: 6.7 Consensus size: 6
24562018 CCTTTTCTTT
24562028 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTCTTTTC TTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC -T-TTTTC TTTT
24562070 ATTCATTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:24567229 original size:28 final size:27
Alignment explanation
Indices: 24567171--24567394 Score: 146
Period size: 30 Copynumber: 7.7 Consensus size: 27
24567161 GGATACCCGA
* **
24567171 GGGT-AAAATGATAATTTTTAGAAAAATC
1 GGGTAAAAATG-TAATTTTT-GGAAGTTC
*
24567199 GGGATAAAAATGTAATTTTTGGACGTTC
1 GGG-TAAAAATGTAATTTTTGGAAGTTC
*
24567227 GGGGGTAAAAATGTAATTTTTGAAAGTTTC
1 --GGGTAAAAATGTAATTTTTGGAAG-TTC
* * *
24567257 GAGGTCAAAAATGTATTTTTTTTGGAATTTTA
1 G-GGT-AAAAATGTA--ATTTTTGGAA-GTTC
*
24567289 GGGTTAAAATGTAATTTTTGGAAGTTC
1 GGGTAAAAATGTAATTTTTGGAAGTTC
* *
24567316 GGGGAAAAAATGTAA-TTTTGGAAGTTTT
1 -GGGTAAAAATGTAATTTTTGGAAG-TTC
* *
24567344 GAGGTCAAAAATGTAATTTTGGAGAAGTTTGA
1 G-GGT-AAAAATGTAATTTTTG-GAAG-TT-C
*
24567376 GGGTTAAAATGTAATTTTT
1 GGGTAAAAATGTAATTTTT
24567395 AGATAGTTTA
Statistics
Matches: 157, Mismatches: 22, Indels: 32
0.74 0.10 0.15
Matches are distributed among these distances:
27 12 0.08
28 33 0.21
29 41 0.26
30 46 0.29
31 13 0.08
32 12 0.08
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (27 bp):
GGGTAAAAATGTAATTTTTGGAAGTTC
Found at i:24567235 original size:29 final size:28
Alignment explanation
Indices: 24567171--24567394 Score: 173
Period size: 29 Copynumber: 7.7 Consensus size: 28
24567161 GGATACCCGA
* **
24567171 GGGT-AAAATGATAATTTTTAGAAAAATCG
1 GGGTAAAAATG-TAATTTTT-GGAAGTTCG
* *
24567200 GGATAAAAATGTAATTTTTGGACGTTCGG
1 GGGTAAAAATGTAATTTTTGGAAGTTC-G
*
24567229 GGGTAAAAATGTAATTTTTGAAAGTTTCG
1 GGGTAAAAATGTAATTTTTGGAAG-TTCG
* * * **
24567258 AGGTCAAAAATGTATTTTTTTTGGAATTTTA
1 GGGT-AAAAATGTA--ATTTTTGGAAGTTCG
*
24567289 GGGTTAAAATGTAATTTTTGGAAGTTCG
1 GGGTAAAAATGTAATTTTTGGAAGTTCG
* *
24567317 GGGAAAAAATGTAA-TTTTGGAAGTTTTG
1 GGGTAAAAATGTAATTTTTGGAAG-TTCG
* * *
24567345 AGGTCAAAAATGTAATTTTGGAGAAGTTTG
1 GGGT-AAAAATGTAATTTTTG-GAAGTTCG
*
24567375 AGGGTTAAAATGTAATTTTT
1 -GGGTAAAAATGTAATTTTT
24567395 AGATAGTTTA
Statistics
Matches: 155, Mismatches: 29, Indels: 21
0.76 0.14 0.10
Matches are distributed among these distances:
27 9 0.06
28 32 0.21
29 47 0.30
30 47 0.30
31 12 0.08
32 8 0.05
ACGTcount: A:0.35, C:0.03, G:0.24, T:0.38
Consensus pattern (28 bp):
GGGTAAAAATGTAATTTTTGGAAGTTCG
Found at i:24567269 original size:30 final size:29
Alignment explanation
Indices: 24567203--24567403 Score: 178
Period size: 30 Copynumber: 6.8 Consensus size: 29
24567193 AAAATCGGGA
* *
24567203 TAAAAATGTAATTTTTGGACG-TTCGGGGG
1 TAAAAATGTAATTTTTGGAAGTTTC-GAGG
*
24567232 TAAAAATGTAATTTTTGAAAGTTTCGAGG
1 TAAAAATGTAATTTTTGGAAGTTTCGAGG
* * *
24567261 TCAAAAATGTATTTTTTTTGGAATTTTAG-GG
1 T-AAAAATGTA--ATTTTTGGAAGTTTCGAGG
* *
24567292 TTAAAATGTAATTTTTGGAAG-TTCGGGG
1 TAAAAATGTAATTTTTGGAAGTTTCGAGG
* *
24567320 AAAAAATGTAA-TTTTGGAAGTTTTGAGG
1 TAAAAATGTAATTTTTGGAAGTTTCGAGG
*
24567348 TCAAAAATGTAATTTTGGAGAAGTTT-GAGGG
1 T-AAAAATGTAATTTTTG-GAAGTTTCGA-GG
* *
24567379 TTAAAATGTAATTTTTAGATAGTTT
1 TAAAAATGTAATTTTTGGA-AGTTT
24567404 AGGGACTTTT
Statistics
Matches: 141, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
27 12 0.09
28 25 0.18
29 35 0.25
30 44 0.31
31 13 0.09
32 12 0.09
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.40
Consensus pattern (29 bp):
TAAAAATGTAATTTTTGGAAGTTTCGAGG
Found at i:24567379 original size:87 final size:88
Alignment explanation
Indices: 24567205--24567394 Score: 269
Period size: 87 Copynumber: 2.2 Consensus size: 88
24567195 AATCGGGATA
* *
24567205 AAAATGTAATTTTTGGACGTTCGGGGGTAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAATG
1 AAAATGTAATTTTTGGAAGTTCGGGGGAAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAATG
* * *
24567270 TATTTTTTTTGGAATTTTAGGGTT
66 TA-TATTTTGGGAATTTGAGGGTT
* *
24567294 AAAATGTAATTTTTGGAAGTTC-GGGGAAAAAATGTAA-TTTTGGAAGTTTTGAGGTCAAAAATG
1 AAAATGTAATTTTTGGAAGTTCGGGGGAAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAATG
24567357 TA-ATTTTGGAGAAGTTTGAGGGTT
66 TATATTTTGG-GAA-TTTGAGGGTT
24567381 AAAATGTAATTTTT
1 AAAATGTAATTTTT
24567395 AGATAGTTTA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
85 5 0.05
86 3 0.03
87 49 0.53
88 14 0.15
89 21 0.23
ACGTcount: A:0.33, C:0.03, G:0.24, T:0.39
Consensus pattern (88 bp):
AAAATGTAATTTTTGGAAGTTCGGGGGAAAAAATGTAATTTTTGAAAGTTTCGAGGTCAAAAATG
TATATTTTGGGAATTTGAGGGTT
Found at i:24568507 original size:19 final size:19
Alignment explanation
Indices: 24568485--24568521 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
24568475 TATAATTACT
*
24568485 AAAATAGTTATTAATATTG
1 AAAACAGTTATTAATATTG
24568504 AAAACAGTTATTAATATT
1 AAAACAGTTATTAATATT
24568522 ATTAGTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (19 bp):
AAAACAGTTATTAATATTG
Found at i:24568525 original size:9 final size:9
Alignment explanation
Indices: 24568511--24568571 Score: 50
Period size: 9 Copynumber: 6.3 Consensus size: 9
24568501 TTGAAAACAG
24568511 TTATTAATA
1 TTATTAATA
*
24568520 TTATTAGTA
1 TTATTAATA
24568529 TTACTTAATGTGA
1 TTA-TTAA--T-A
*
24568542 TAATTAATA
1 TTATTAATA
*
24568551 TTATGAATA
1 TTATTAATA
*
24568560 ATATTAATA
1 TTATTAATA
24568569 TTA
1 TTA
24568572 ATGATGTTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
9 28 0.70
10 4 0.10
12 5 0.12
13 3 0.08
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (9 bp):
TTATTAATA
Found at i:24569353 original size:18 final size:17
Alignment explanation
Indices: 24569299--24569354 Score: 76
Period size: 17 Copynumber: 3.3 Consensus size: 17
24569289 TTTAATACCC
*
24569299 AAAATGATTTCAAATTT
1 AAAATGAATTCAAATTT
*
24569316 AAAATAAATTCAAATTT
1 AAAATGAATTCAAATTT
*
24569333 AAAATGAATTAAAATTT
1 AAAATGAATTCAAATTT
*
24569350 TAAAT
1 AAAAT
24569355 TAAAAGTTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (17 bp):
AAAATGAATTCAAATTT
Found at i:24577597 original size:21 final size:21
Alignment explanation
Indices: 24577573--24577647 Score: 71
Period size: 21 Copynumber: 3.6 Consensus size: 21
24577563 CAGTGCAGAT
24577573 TTCTACCGAAACTTGTGTTAC
1 TTCTACCGAAACTTGTGTTAC
** *
24577594 TTCTACTAAAACTTATGTTAC
1 TTCTACCGAAACTTGTGTTAC
* ** *
24577615 TTCTA-CTAATACAAGTGTAAC
1 TTCTACCGAA-ACTTGTGTTAC
24577636 TTCTACCGAAAC
1 TTCTACCGAAAC
24577648 AAGTCATGCT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 2 0.05
21 37 0.88
22 3 0.07
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (21 bp):
TTCTACCGAAACTTGTGTTAC
Found at i:24578404 original size:25 final size:25
Alignment explanation
Indices: 24578324--24578486 Score: 168
Period size: 25 Copynumber: 6.4 Consensus size: 25
24578314 ATTTAACTCA
*
24578324 TACGAGCCCAAACAGAGTTTA-GCTCT
1 TACGAG-CCAAACAGA-ATTACGCTCT
* * *
24578350 TACAAGCCTAAACAG-ACTATCACTCT
1 TACGAGCC-AAACAGAATTA-CGCTCT
* **
24578376 TACGAGCCAAATAGAATTACAATCT
1 TACGAGCCAAACAGAATTACGCTCT
*
24578401 TACGAGCCAGACAGAATTACGCTCT
1 TACGAGCCAAACAGAATTACGCTCT
** *
24578426 TATAAGCCAAACAGAATCACGCTCT
1 TACGAGCCAAACAGAATTACGCTCT
24578451 TACGAGCCAAACAGAATTACGCTCT
1 TACGAGCCAAACAGAATTACGCTCT
*
24578476 TAAGAGCCAAA
1 TACGAGCCAAA
24578487 ATCAAAATAT
Statistics
Matches: 113, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
24 2 0.02
25 86 0.76
26 25 0.22
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (25 bp):
TACGAGCCAAACAGAATTACGCTCT
Found at i:24578456 original size:75 final size:75
Alignment explanation
Indices: 24578345--24578484 Score: 194
Period size: 75 Copynumber: 1.9 Consensus size: 75
24578335 ACAGAGTTTA
* *
24578345 GCTCTTACAAGCCTAAACAGACTATCACTCTTACGAGCCAAATAGAATTACAATCTTACGAGCCA
1 GCTCTTACAAGCCTAAACAGAC-ATCACTCTTACGAGCCAAACAGAATTACAATCTTAAGAGCCA
24578410 GACAGAATTAC
65 GACAGAATTAC
* **
24578421 GCTCTTATAAGCC-AAACAGA-ATCACGCTCTTACGAGCCAAACAGAATTACGCTCTTAAGAGCC
1 GCTCTTACAAGCCTAAACAGACATCA--CTCTTACGAGCCAAACAGAATTACAATCTTAAGAGCC
24578484 A
64 A
24578485 AAATCAAAAT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
73 4 0.07
75 41 0.72
76 12 0.21
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.21
Consensus pattern (75 bp):
GCTCTTACAAGCCTAAACAGACATCACTCTTACGAGCCAAACAGAATTACAATCTTAAGAGCCAG
ACAGAATTAC
Found at i:24583202 original size:23 final size:23
Alignment explanation
Indices: 24583176--24583219 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
24583166 ACACACATAT
24583176 AATCCTAAT-TATCCACAACTAAC
1 AATCCT-ATCTATCCACAACTAAC
24583199 AATCCTATCTATCCACAACTA
1 AATCCTATCTATCCACAACTA
24583220 CCACATCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.27
Consensus pattern (23 bp):
AATCCTATCTATCCACAACTAAC
Found at i:24594844 original size:14 final size:14
Alignment explanation
Indices: 24594825--24594860 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
24594815 TTATAAATTG
24594825 AAATTTTAAATGTT
1 AAATTTTAAATGTT
* *
24594839 AAATTTTTATTGTT
1 AAATTTTAAATGTT
24594853 AAATTTTA
1 AAATTTTA
24594861 TAAGTTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (14 bp):
AAATTTTAAATGTT
Found at i:24596407 original size:28 final size:28
Alignment explanation
Indices: 24596360--24596432 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
24596350 CATAAAGGCG
24596360 TCCATAAGC-AAGAT-GACCACATAGACA
1 TCCATAAGCAAAGATAG-CCACATAGACA
* * ***
24596387 TTCATAAGCAAAGATAGCCACTTAGGTG
1 TCCATAAGCAAAGATAGCCACATAGACA
24596415 TCCATAAGCAAAGATAGC
1 TCCATAAGCAAAGATAGC
24596433 AACAAGGCTC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 8 0.21
28 29 0.76
29 1 0.03
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (28 bp):
TCCATAAGCAAAGATAGCCACATAGACA
Found at i:24596537 original size:29 final size:29
Alignment explanation
Indices: 24596436--24596567 Score: 110
Period size: 29 Copynumber: 4.5 Consensus size: 29
24596426 AGATAGCAAC
* **
24596436 AAGGCTC-CATATAACATATTCT-GCTGCA
1 AAGGCTCTCATATAACAAATT-TAGCCACA
* *
24596464 AAGGCTCTCAAATAACATATTTCCA-CCACA
1 AAGGCTCTCATATAACAAATTT--AGCCACA
*
24596494 AAGGCATCACATATAACAAATTTAGCCACA
1 AAGGC-TCTCATATAACAAATTTAGCCACA
* **
24596524 ACGGCTCTCATATAGTAGAA-TTAGCCACA
1 AAGGCTCTCATATAACA-AATTTAGCCACA
24596553 AAGGCTCTCATATAA
1 AAGGCTCTCATATAA
24596568 TTGATTTGCT
Statistics
Matches: 85, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
28 8 0.09
29 44 0.52
30 19 0.22
31 14 0.16
ACGTcount: A:0.39, C:0.25, G:0.12, T:0.24
Consensus pattern (29 bp):
AAGGCTCTCATATAACAAATTTAGCCACA
Found at i:24598029 original size:20 final size:21
Alignment explanation
Indices: 24597988--24598029 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24597978 TCCGACTTTG
24597988 AAAAATCATAAGAAAATATAA
1 AAAAATCATAAGAAAATATAA
* *
24598009 AAAAATTATTAGAAAAT-TAA
1 AAAAATCATAAGAAAATATAA
24598029 A
1 A
24598030 TTTATATGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAAATCATAAGAAAATATAA
Found at i:24598549 original size:6 final size:6
Alignment explanation
Indices: 24598527--24598570 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
24598517 TTTGTGATCA
* * * *
24598527 AAATTG AAAGTG AAATTG GAATTG AAAATG AAATTG GAATTG AA
1 AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AAATTG AA
24598571 TGTGATATGA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (6 bp):
AAATTG
Found at i:24598551 original size:18 final size:18
Alignment explanation
Indices: 24598528--24598575 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
24598518 TTGTGATCAA
24598528 AATTGAAAGTGAAATTGG
1 AATTGAAAGTGAAATTGG
*
24598546 AATTGAAAATGAAATTGG
1 AATTGAAAGTGAAATTGG
*
24598564 AATTGAATGTGA
1 AATTGAAAGTGA
24598576 TATGAATTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.46, C:0.00, G:0.25, T:0.29
Consensus pattern (18 bp):
AATTGAAAGTGAAATTGG
Found at i:24601095 original size:18 final size:18
Alignment explanation
Indices: 24601055--24601109 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
24601045 TCTTATATTT
24601055 TATATTATTATATAATAA
1 TATATTATTATATAATAA
*
24601073 AATATTATTAT-TAAGTAA
1 TATATTATTATATAA-TAA
*
24601091 TATATCTTTTA-ATAATAA
1 TATAT-TATTATATAATAA
24601109 T
1 T
24601110 GATAATAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 3 0.10
18 21 0.68
19 7 0.23
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (18 bp):
TATATTATTATATAATAA
Found at i:24609993 original size:59 final size:60
Alignment explanation
Indices: 24609865--24610201 Score: 269
Period size: 59 Copynumber: 5.7 Consensus size: 60
24609855 AGTCCCTGAC
* * * * ** *
24609865 CTTTCCATAAATCACATTTTGACCCCTCGAGCTTTCCAAAAATTATA-TTTTGACCATCGAA
1 CTTTCCAAAAATCACATTTTGA-CCCTCGAACTTTCCAAAAATT-TACATTTAACCCCCAAA
* * * *
24609926 TTTTCCAAAAACCACA-TTTGACCCTCGAACTTTCCAAAAATTTAGATTTGACCCCCAAA
1 CTTTCCAAAAATCACATTTTGACCCTCGAACTTTCCAAAAATTTACATTTAACCCCCAAA
* * * * * * *
24609985 CTTACCAAAAATTATATTTTAACCCT-AAAC-TTCCTAAAA-TTACATTTTAACCCCTAAA
1 CTTTCCAAAAATCACATTTTGACCCTCGAACTTTCCAAAAATTTACA-TTTAACCCCCAAA
* * * * * *
24610043 CTTCCCAAAAATTACATTTTAACCC-CTAAACTTCCCAAAAATTTACATTTAACCCTCAAA
1 CTTTCCAAAAATCACATTTTGACCCTC-GAACTTTCCAAAAATTTACATTTAACCCCCAAA
* * * * * *
24610103 CTTTTCAAAAATCTCATTTT-AACCTTGAACTTTCCAAAAA-TTAGGATTTAACCCCTAAA
1 CTTTCCAAAAATCACATTTTGACCCTCGAACTTTCCAAAAATTTA-CATTTAACCCCCAAA
* *
24610162 CTCTCCAAAAATTTA-ATTTTGACCCTCGAACTTTCCAAAA
1 CTTTCCAAAAA-TCACATTTTGACCCTCGAACTTTCCAAAA
24610202 TTCAATTTTG
Statistics
Matches: 223, Mismatches: 42, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
57 4 0.02
58 47 0.21
59 89 0.40
60 65 0.29
61 18 0.08
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (60 bp):
CTTTCCAAAAATCACATTTTGACCCTCGAACTTTCCAAAAATTTACATTTAACCCCCAAA
Found at i:24610220 original size:29 final size:30
Alignment explanation
Indices: 24609865--24610217 Score: 248
Period size: 30 Copynumber: 11.9 Consensus size: 30
24609855 AGTCCCTGAC
* * * *
24609865 CTTTCCATAAATCACATTTTGACCCCTCGAG
1 CTTTCCAAAAATTACATTTTGA-CCCTCAAA
* * *
24609896 CTTTCCAAAAATTATATTTTGACCATCGAA
1 CTTTCCAAAAATTACATTTTGACCCTCAAA
* ** *
24609926 TTTTCCAAAAACCACA-TTTGACCCTCGAA
1 CTTTCCAAAAATTACATTTTGACCCTCAAA
* *
24609955 CTTTCCAAAAATTTAGA-TTTGACCCCCAAA
1 CTTTCCAAAAA-TTACATTTTGACCCTCAAA
* * *
24609985 CTTACCAAAAATTATATTTTAACCCT-AAA
1 CTTTCCAAAAATTACATTTTGACCCTCAAA
* *
24610014 C-TTCCTAAAATTACATTTTAACCC-CTAAA
1 CTTTCCAAAAATTACATTTTGACCCTC-AAA
* *
24610043 CTTCCCAAAAATTACATTTTAACCC-CTAAA
1 CTTTCCAAAAATTACATTTTGACCCTC-AAA
* *
24610073 CTTCCCAAAAATTTACA-TTTAACCCTCAAA
1 CTTTCCAAAAA-TTACATTTTGACCCTCAAA
* * **
24610103 CTTTTCAAAAATCT-CATTTT-AACCTTGAA
1 CTTTCCAAAAAT-TACATTTTGACCCTCAAA
* *
24610132 CTTTCCAAAAATTAGGA-TTTAACCC-CTAAA
1 CTTTCCAAAAATTA-CATTTTGACCCTC-AAA
* *
24610162 CTCTCCAAAAATTTA-ATTTTGACCCTCGAA
1 CTTTCCAAAAA-TTACATTTTGACCCTCAAA
24610192 CTTTCC-AAAATT-CAATTTTGACCCTC
1 CTTTCCAAAAATTAC-ATTTTGACCCTC
24610218 GAAAGCCTCA
Statistics
Matches: 265, Mismatches: 39, Indels: 38
0.77 0.11 0.11
Matches are distributed among these distances:
28 23 0.09
29 74 0.28
30 139 0.52
31 29 0.11
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.33
Consensus pattern (30 bp):
CTTTCCAAAAATTACATTTTGACCCTCAAA
Found at i:24610240 original size:30 final size:29
Alignment explanation
Indices: 24610160--24610246 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 29
24610150 TTAACCCCTA
24610160 AACTCTCCAAAAATTTAATTTTGACCCTCG
1 AACTCT-CAAAAATTTAATTTTGACCCTCG
* * *
24610190 AACTTTCCAAAATTCAATTTTGACCCTCG
1 AACTCTCAAAAATTTAATTTTGACCCTCG
*
24610219 AAAGC-CTCAAAAATTTGATTTTGACCCT
1 -AA-CTCTCAAAAATTTAATTTTGACCCT
24610247 TTTTTAGTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
29 21 0.44
30 26 0.54
31 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (29 bp):
AACTCTCAAAAATTTAATTTTGACCCTCG
Found at i:24614232 original size:14 final size:13
Alignment explanation
Indices: 24614205--24614229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24614195 AAAGAAGGTC
24614205 AAAAAAAGAAAAG
1 AAAAAAAGAAAAG
24614218 AAAAAAAGAAAA
1 AAAAAAAGAAAA
24614230 AGAGTCGAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAG
Found at i:24614722 original size:81 final size:81
Alignment explanation
Indices: 24614587--24614753 Score: 280
Period size: 81 Copynumber: 2.1 Consensus size: 81
24614577 AGGTAGTTAA
* *
24614587 CAAGAATATCAAGAAGATCGAGACCTATAAAGATTGGAATGAGAAGTTATCATTTGCACTCTACG
1 CAAGAATATCAAAAAGATCGAGACCTACAAAGATTGGAATGAGAAGTTATCATTTGCACTCTACG
24614652 CTTATTGAACATCAAT
66 CTTATTGAACATCAAT
* * *
24614668 CAAGAATATCAAAAAGATCGAGACCTACAAAGATTGGCATGAGAAGTTATCATTTTCTCTCTACG
1 CAAGAATATCAAAAAGATCGAGACCTACAAAGATTGGAATGAGAAGTTATCATTTGCACTCTACG
*
24614733 CTTATTGAATATCAAT
66 CTTATTGAACATCAAT
24614749 CAAGA
1 CAAGA
24614754 TTTTGTTGGG
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.28
Consensus pattern (81 bp):
CAAGAATATCAAAAAGATCGAGACCTACAAAGATTGGAATGAGAAGTTATCATTTGCACTCTACG
CTTATTGAACATCAAT
Found at i:24615197 original size:13 final size:13
Alignment explanation
Indices: 24615179--24615203 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24615169 TTTATCCCAA
24615179 AAAAATAAAAAAT
1 AAAAATAAAAAAT
24615192 AAAAATAAAAAA
1 AAAAATAAAAAA
24615204 AAGAGAAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:24615216 original size:6 final size:6
Alignment explanation
Indices: 24615186--24615284 Score: 94
Period size: 6 Copynumber: 16.7 Consensus size: 6
24615176 CAAAAAAATA
* * * * *
24615186 AAAAAT AAAAAT AAAAA- AAAGAG AAGAAG AAAAAG AAAGAAA AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG AAAAAG
* * * *
24615234 GAAAAG GAAAAG AAAAAG AAAAAG AAAAAG GAAAA- AAAAGG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
24615281 AAAA
1 AAAA
24615285 GGAGAGGTCG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
5 7 0.09
6 66 0.85
7 5 0.06
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:24615218 original size:23 final size:22
Alignment explanation
Indices: 24615177--24615284 Score: 96
Period size: 23 Copynumber: 4.9 Consensus size: 22
24615167 ATTTTATCCC
* * *
24615177 AAAAAAATA-AAAAATAAAAAT
1 AAAAAAAAAGAAAAAGAAAAAG
*
24615198 AAAAAAAAGAGAAGAAGAAAAAG
1 AAAAAAAA-AGAAAAAGAAAAAG
* * *
24615221 -AAAGAAAA-AAAAGGAAAAGG
1 AAAAAAAAAGAAAAAGAAAAAG
24615241 AAAAGAAAAAGAAAAAGAAAAAGG
1 AAAA-AAAAAGAAAAAGAAAAA-G
*
24615265 AAAAAAAAGGAAAAAGAAAA
1 AAAAAAAAAGAAAAAGAAAA
24615285 GGAGAGGTCG
Statistics
Matches: 69, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
20 9 0.13
21 11 0.16
22 11 0.16
23 33 0.48
24 5 0.07
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (22 bp):
AAAAAAAAAGAAAAAGAAAAAG
Found at i:24615230 original size:12 final size:12
Alignment explanation
Indices: 24615199--24615271 Score: 51
Period size: 13 Copynumber: 5.6 Consensus size: 12
24615189 AATAAAAATA
24615199 AAAAAAAGAGAAG
1 AAAAAAAGA-AAG
24615212 AAGAAAAAGAAAG
1 AA-AAAAAGAAAG
24615225 AAAAAAAAGGAAAAGG
1 -AAAAAAA-G-AAA-G
*
24615241 AAAAGAA-AAAG
1 AAAAAAAGAAAG
24615252 AAAAAGAA-AAAGG
1 AAAAA-AAGAAA-G
24615265 AAAAAAA
1 AAAAAAA
24615272 AGGAAAAAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
11 5 0.10
12 10 0.20
13 16 0.31
14 10 0.20
15 9 0.18
16 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAG
Found at i:24615253 original size:40 final size:40
Alignment explanation
Indices: 24615198--24615285 Score: 121
Period size: 40 Copynumber: 2.3 Consensus size: 40
24615188 AAATAAAAAT
*
24615198 AAAAA-AAAGAGAAGAAGAAAAAG-AAA--GAAAAAAAAGG
1 AAAAAGAAA-AGAAAAAGAAAAAGAAAAAGGAAAAAAAAGG
*
24615235 AAAAGGAAAAGAAAAAGAAAAAGAAAAAGGAAAAAAAAGG
1 AAAAAGAAAAGAAAAAGAAAAAGAAAAAGGAAAAAAAAGG
24615275 AAAAAGAAAAG
1 AAAAAGAAAAG
24615286 GAGAGGTCGA
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
37 17 0.39
38 6 0.14
40 21 0.48
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (40 bp):
AAAAAGAAAAGAAAAAGAAAAAGAAAAAGGAAAAAAAAGG
Found at i:24616515 original size:97 final size:98
Alignment explanation
Indices: 24616334--24616552 Score: 244
Period size: 97 Copynumber: 2.2 Consensus size: 98
24616324 GGAAATAAAA
* ** * * *
24616334 GGAAAGGTTGAGGCCGCAACGATGAATCTGGTACCATGAAGATATGAAGGGAAAGGTTGAGGCCA
1 GGAAA-GTTGAGGCCGCAATGGCGAATCTAGCACCATGAAGATATAAAGGGAAAGGTTGAGGCCA
* * *
24616399 CAACAACGAACCCTGTACCTTAGAAGACATGATG
65 CAACAACAAACCCTATACCTTAGAAGACAGGATG
* *
24616433 GGAAAGATTGAGGCCGCAATGGCGGATCTAGCACCATGAA-A-ATAAAGGGAAAGGTTGAGGCCG
1 GGAAAG-TTGAGGCCGCAATGGCGAATCTAGCACCATGAAGATATAAAGGGAAAGGTTGAGGCCA
*** **
24616496 CAATGGCAAACCCTATACCTTAGAAGATGGGATG
65 CAACAACAAACCCTATACCTTAGAAGACAGGATG
*
24616530 GGAAACGTTGAGGCAGCAATGGC
1 GGAAA-GTTGAGGCCGCAATGGC
24616553 AAACTCTGTA
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
97 66 0.65
98 3 0.03
99 32 0.32
ACGTcount: A:0.35, C:0.18, G:0.31, T:0.16
Consensus pattern (98 bp):
GGAAAGTTGAGGCCGCAATGGCGAATCTAGCACCATGAAGATATAAAGGGAAAGGTTGAGGCCAC
AACAACAAACCCTATACCTTAGAAGACAGGATG
Found at i:24616637 original size:97 final size:95
Alignment explanation
Indices: 24616530--24616893 Score: 315
Period size: 97 Copynumber: 3.8 Consensus size: 95
24616520 AGATGGGATG
* * * * **
24616530 GGAAACGTTGAGGCAGCAATGGC-AAACTCTGTACCTTAGAAGACATGACAGGAAAGATCGAGGC
1 GGAAAGGTTGAGGCAGCAACGACGAACCT-TGTACCTTAGAAGACATGATTGGAAAGATCGAGGC
24616594 CGCAACGGCAGATCTAGCACCATAGAAATAAA
65 CGCAACGGCAGATCTAGCACCAT-GAAATAAA
* * * ** * **
24616626 TGGAAAGGTTGAGGCTGTAACGACGAACCTTGTACCTTAGAATATGTGA-TGAGAAGGATTAAGG
1 -GGAAAGGTTGAGGCAGCAACGACGAACCTTGTACCTTAGAAGACATGATTG-GAAAGATCGAGG
* * * *
24616690 TCGCAACGG-TGAATCTGGTACCATGAAGATATGAA
64 CCGCAACGGCAG-ATCTAGCACCATGAA-ATA--AA
* ** *
24616725 GGGAAAGGTTGAGGCCGCAACGGTGAACCTTGTACCTTAG-AGACATGATGGGAAAGATCGAGGC
1 -GGAAAGGTTGAGGCAGCAACGACGAACCTTGTACCTTAGAAGACATGATTGGAAAGATCGAGGC
* * * *
24616789 CGTAACGACGGATTTAGCACCATGAAAATAAA
65 CGCAACGGCAGATCTAGCACCATG-AAATAAA
** * *
24616821 GGAAAAGGTTGAGGCAGCAACGACGAATCC-TGTACCTTAGAAGATGTGATTGGAAGGATTGAGG
1 GG-AAAGGTTGAGGCAGCAACGACGAA-CCTTGTACCTTAGAAGACATGATTGGAAAGATCGAGG
24616885 CCGCAACGG
64 CCGCAACGG
24616894 TGAACCTTAT
Statistics
Matches: 209, Mismatches: 46, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
95 2 0.01
96 38 0.18
97 91 0.44
98 37 0.18
99 41 0.20
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.19
Consensus pattern (95 bp):
GGAAAGGTTGAGGCAGCAACGACGAACCTTGTACCTTAGAAGACATGATTGGAAAGATCGAGGCC
GCAACGGCAGATCTAGCACCATGAAATAAA
Found at i:24616662 original size:147 final size:146
Alignment explanation
Indices: 24616319--24616676 Score: 414
Period size: 147 Copynumber: 2.4 Consensus size: 146
24616309 CGAATATAGT
* * * * * *
24616319 ACCATGGAAATAAAAGGAAAGGTTGAGGCCGCAACGATGAATCTGGTACCAT-GAAGATATGAAG
1 ACCAT-GAAATAAAAGGAAAGGTTGAGGCCGCAACGACGAACCTTGTACCTTAGAAGATGTGATG
* * ** *
24616383 GGAAAGGTTGAGGCCACAACAACGAACCCTGTACCTTAGAAGACATGATGGGAAAGATTGAGGCC
65 GGAAACGTTGAGGCCACAACAACAAACCCTGTACCTTAGAAGACATGACAGGAAAGATCGAGGCC
* *
24616448 GCAATGGCGGATCTAGC
130 GCAACGGCAGATCTAGC
* * * * * * *
24616465 ACCATGAAAATAAAGGGAAAGGTTGAGGCCGCAATGGCAAACCCTATACCTTAGAAGATGGGATG
1 ACCATG-AAATAAAAGGAAAGGTTGAGGCCGCAACGACGAACCTTGTACCTTAGAAGATGTGATG
*** *
24616530 GGAAACGTTGAGG-CAGCAATGGCAAACTCTGTACCTTAGAAGACATGACAGGAAAGATCGAGGC
65 GGAAACGTTGAGGCCA-CAACAACAAACCCTGTACCTTAGAAGACATGACAGGAAAGATCGAGGC
24616594 CGCAACGGCAGATCTAGC
129 CGCAACGGCAGATCTAGC
* * * *
24616612 ACCATAGAAATAAATGGAAAGGTTGAGGCTGTAACGACGAACCTTGTACCTTAGAATATGTGATG
1 ACCAT-GAAATAAAAGGAAAGGTTGAGGCCGCAACGACGAACCTTGTACCTTAGAAGATGTGATG
24616677 AGAAGGATTA
Statistics
Matches: 174, Mismatches: 34, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
145 1 0.01
146 42 0.24
147 130 0.75
148 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (146 bp):
ACCATGAAATAAAAGGAAAGGTTGAGGCCGCAACGACGAACCTTGTACCTTAGAAGATGTGATGG
GAAACGTTGAGGCCACAACAACAAACCCTGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCG
CAACGGCAGATCTAGC
Found at i:24616711 original size:147 final size:146
Alignment explanation
Indices: 24616411--24616747 Score: 369
Period size: 147 Copynumber: 2.3 Consensus size: 146
24616401 ACAACGAACC
* * *
24616411 CTGTACCTTAGAAGACATGATGGGAAAGATTGAGGCCGCAATGGCGGATCTAGCACCATGAAAAT
1 CTGTACCTTAGAAGACATGA-AGGAAAGATTGAGGCCGCAACGGCAGATCTAGCACCATGAAAAT
* * * *
24616476 AAAGGGAAAGGTTGAGGCCGCAATGGCAAACCCTATACCTTAGAAGATGGGATGGGAAACGTTGA
65 AAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAGAAGATGGGATGAGAAACGTTAA
*
24616541 GGCAGCAATGGCAAACT
130 GGCAGCAACGGCAAACT
*
24616558 CTGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCGCAACGGCAGATCTAGCACCAT-AGAAA
1 CTGTACCTTAGAAGACATGA-AGGAAAGATTGAGGCCGCAACGGCAGATCTAGCACCATGA-AAA
* * * * * * * * *
24616622 TAAATGGAAAGGTTGAGGCTGTAACGACGAACCTTGTACCTTAGAATATGTGATGAG-AAGGATT
64 TAAAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAGAAGATGGGATGAGAAACG-TT
**
24616686 AAGGTC-GCAACGGTGAA-T
128 AAGG-CAGCAACGGCAAACT
* * *
24616704 CTGGTACCAT-GAAGATATGAAGGGAAAGGTTGAGGCCGCAACGG
1 CT-GTACCTTAGAAGACATGAA-GGAAAGATTGAGGCCGCAACGG
24616748 TGAACCTTGT
Statistics
Matches: 160, Mismatches: 25, Indels: 11
0.82 0.13 0.06
Matches are distributed among these distances:
145 1 0.01
146 36 0.22
147 122 0.76
148 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (146 bp):
CTGTACCTTAGAAGACATGAAGGAAAGATTGAGGCCGCAACGGCAGATCTAGCACCATGAAAATA
AAGGGAAAGGTTGAGGCCGCAACGACAAACCCTATACCTTAGAAGATGGGATGAGAAACGTTAAG
GCAGCAACGGCAAACT
Found at i:24616870 original size:195 final size:197
Alignment explanation
Indices: 24616559--24616943 Score: 514
Period size: 195 Copynumber: 2.0 Consensus size: 197
24616549 TGGCAAACTC
*
24616559 TGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCGCAACGGCAGATCTAGCACCATAGAAATA
1 TGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCGCAACGACAGATCTAGCACCATAGAAATA
* * *
24616624 AATGGAAAGGTTGAGGCTGTAACGACGAACCTTGTACCTTAGAATATGTGA-TGAGAAGGATTAA
66 AATGGAAAGGTTGAGGCAGCAACGACGAACCTTGTACCTTAGAAGATGTGATTG-GAAGGATTAA
* * *
24616688 GGTCGCAACGGTGAATCTGGTACCAT-GAAGATATGAAGGGAAAGG-TTGAGGCCGCAACGGTGA
130 GGCCGCAACGGTGAACCTGATACCATAGAAGATATGAAGGG-AAGGATTGAGGCCGCAACGGTGA
24616751 ACCT
194 ACCT
** * * *
24616755 TGTACCTTAG-AGACATGATGGGAAAGATCGAGGCCGTAACGACGGATTTAGCACCAT-GAAAAT
1 TGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCGCAACGACAGATCTAGCACCATAG-AAAT
24616818 AAA-GGAAAAGGTTGAGGCAGCAACGACGAATCC-TGTACCTTAGAAGATGTGATTGGAAGGATT
65 AAATGG-AAAGGTTGAGGCAGCAACGACGAA-CCTTGTACCTTAGAAGATGTGATTGGAAGGATT
* * * * * *
24616881 GAGGCCGCAACGGTGAACCTTATACCTTAGAAGATGTGATGGGAAGGATTGAGGCTGCAACGG
128 AAGGCCGCAACGGTGAACCTGATACCATAGAAGATATGAAGGGAAGGATTGAGGCCGCAACGG
24616944 CAGATCTAGT
Statistics
Matches: 165, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
194 3 0.02
195 122 0.74
196 40 0.24
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (197 bp):
TGTACCTTAGAAGACATGACAGGAAAGATCGAGGCCGCAACGACAGATCTAGCACCATAGAAATA
AATGGAAAGGTTGAGGCAGCAACGACGAACCTTGTACCTTAGAAGATGTGATTGGAAGGATTAAG
GCCGCAACGGTGAACCTGATACCATAGAAGATATGAAGGGAAGGATTGAGGCCGCAACGGTGAAC
CT
Found at i:24616943 original size:50 final size:50
Alignment explanation
Indices: 24616337--24617057 Score: 315
Period size: 50 Copynumber: 14.7 Consensus size: 50
24616327 AATAAAAGGA
** * * * *
24616337 AAGG-TTGAGGCCGCAACGATGAATCTGGTACCAT-GAAGATATGAAGGG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* ** * *
24616385 AAAGG-TTGAGGCCACAACAACGAACCCTGTACCTTAGAAGACATGATGGG
1 -AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * * * * *
24616435 AAAGATTGAGGCCGCAATGGCGGATCTAGCACCAT-GAA-A-ATAAAGGG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * **
24616482 AAAGG-TTGAGGCCGCAATGGCAAACCCTATACCTTAGAAGATGGGATGGG
1 -AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * **
24616532 AAACG-TTGAGGCAGCAATGGC-AAACTCTGTACCTTAGAAGACATGACAGG
1 -AAGGATTGAGGCCGCAACGGCGAACCT-TGTACCTTAGAAGATATGATGGG
* * * * * * * *
24616582 AAAGATCGAGGCCGCAACGGC-AGATCTAGCACCATAGAA-ATA-AATGGA
1 AAGGATTGAGGCCGCAACGGCGA-ACCTTGTACCTTAGAAGATATGATGGG
* * * * * *
24616630 AAGG-TTGAGGCTGTAACGACGAACCTTGTACCTTAGAATATGTGATGAG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * * *
24616679 AAGGATTAAGGTCGCAACGGTGAATCTGGTACCAT-GAAGATATGAAGGG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* *
24616728 AAAGG-TTGAGGCCGCAACGGTGAACCTTGTACCTTAG-AGACATGATGGG
1 -AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * * * * * * *
24616777 AAAGATCGAGGCCGTAACGACGGA-TTTAGCACCAT-GAA-A-ATAAAGGAA
1 AAGGATTGAGGCCGCAACGGCGAACCTT-GTACCTTAGAAGATATGATGG-G
* * * *
24616825 AAGG-TTGAGGCAGCAACGACGAATCC-TGTACCTTAGAAGATGTGATTGG
1 AAGGATTGAGGCCGCAACGGCGAA-CCTTGTACCTTAGAAGATATGATGGG
* * *
24616874 AAGGATTGAGGCCGCAACGGTGAACCTTATACCTTAGAAGATGTGATGGG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * * * *
24616924 AAGGATTGAGGCTGCAACGGC-AGATCTAGTACCAT-GAAAATATAAAAGGA
1 AAGGATTGAGGCCGCAACGGCGA-ACCTTGTACCTTAGAAGATAT-GATGGG
** * * * *
24616974 AAGG-TTGATACCGTAACGGCGAACCTTGTACCGTAGAA-ATAAGACGGG
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
* * * * * *
24617022 AAAGATCGAGGCCGTAACGACGAATCTTATACCTTA
1 AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTA
24617058 AAGTTAAAGA
Statistics
Matches: 490, Mismatches: 151, Indels: 62
0.70 0.21 0.09
Matches are distributed among these distances:
47 77 0.16
48 35 0.07
49 176 0.36
50 199 0.41
51 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (50 bp):
AAGGATTGAGGCCGCAACGGCGAACCTTGTACCTTAGAAGATATGATGGG
Done.