Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47257441
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 3600 characters in sequence are not A, C, G, or T
File 91 of 163
Found at i:25824369 original size:30 final size:30
Alignment explanation
Indices: 25824335--25824391 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
25824325 TTTTTTCTAA
* *
25824335 TTTTTAATAAAATTTATTTATTTTTATATT
1 TTTTTAATAAAATTTAATAATTTTTATATT
*
25824365 TTTTTATTAAAATTTAATAATTTTTAT
1 TTTTTAATAAAATTTAATAATTTTTAT
25824392 TGATTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTTTAATAAAATTTAATAATTTTTATATT
Found at i:25824381 original size:40 final size:39
Alignment explanation
Indices: 25824314--25824405 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
25824304 TTTTTGATGT
** *
25824314 ATTTTATAATTTTTTTTCTAATTTTTAATAAAATTTATTT
1 ATTTTAT-ATTTTTTTTCTAAAATTTAATAAAATTTATTG
**
25824354 ATTTTTATATTTTTTTAT-TAAAATTTAATAATTTTTATTG
1 A-TTTTATATTTTTTT-TCTAAAATTTAATAAAATTTATTG
25824394 ATTTTAT-TTTTT
1 ATTTTATATTTTT
25824406 ATAATTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
38 5 0.11
39 6 0.13
40 27 0.60
41 7 0.16
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (39 bp):
ATTTTATATTTTTTTTCTAAAATTTAATAAAATTTATTG
Found at i:25824671 original size:91 final size:90
Alignment explanation
Indices: 25824514--25824795 Score: 363
Period size: 92 Copynumber: 3.1 Consensus size: 90
25824504 TAATGGTCAA
* * *
25824514 AGGGCCTTTTTGATGTA-TTTGAAAATTTAAGTACCCAATTGAGTGCAAAA-AAAAATCGGGGGC
1 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAATAAAAAT-AGGGGC
*
25824577 TTAATTGTTTTTTTTTGAAAAAGTTTG
65 TTAATTG-CTTTTTTTGAAAAAGTTTG
* * *
25824604 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTACTCAATTGAGTGCAAAATAAAAATAAGGACT
1 AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAATAAAAATAGGGGCT
*
25824669 TAATTGCTCTTTTTGAAAAAGTTTG
66 TAATTGCTTTTTTTGAAAAAGTTTG
* * * * * *
25824694 AGGGCTTTGTTTTTATGCATTTTGAAAGTTCAAGTACCCAAGTGAGTACAAAATAAAAGTAGGGG
1 AGGGC-CT-TTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAATAAAAATAGGGG
* *
25824759 CCTAATTGCTTTTCTTGAAAAAGTTTG
64 CTTAATTGCTTTTTTTGAAAAAGTTTG
25824786 AGGG-CTTTTT
1 AGGGCCTTTTT
25824796 ACACCCTTAA
Statistics
Matches: 167, Mismatches: 21, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
89 4 0.02
90 40 0.24
91 41 0.25
92 82 0.49
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (90 bp):
AGGGCCTTTTTGATGTATTTTGAAAGTTCAAGTACCCAATTGAGTGCAAAATAAAAATAGGGGCT
TAATTGCTTTTTTTGAAAAAGTTTG
Found at i:25837921 original size:26 final size:26
Alignment explanation
Indices: 25837880--25837930 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
25837870 CTCTATGATT
*
25837880 TATGTGAACCGGTGTTCACCAAGATG
1 TATGTGAACCGATGTTCACCAAGATG
* **
25837906 TATGTGAACTGATGTTTGCCAAGAT
1 TATGTGAACCGATGTTCACCAAGAT
25837931 TTGTGCGAGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (26 bp):
TATGTGAACCGATGTTCACCAAGATG
Found at i:25838097 original size:27 final size:26
Alignment explanation
Indices: 25838064--25838155 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
25838054 GCGAGCTTGC
* * *
25838064 GAGTTCGCCAGTCTGTTTGGCAAGTTT
1 GAGTTCGCCAGTCTGTATGGCAA-CTG
25838091 GAGTTCGCCAGTCTGTATGGCGAACTG
1 GAGTTCGCCAGTCTGTATGGC-AACTG
* * *
25838118 GTGTTCGCCAGTCTATGTGGCAAACTG
1 GAGTTCGCCAGTCTGTATGGC-AACTG
25838145 GAGTTCGCCAG
1 GAGTTCGCCAG
25838156 GTAAGTTGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 54 0.96
28 2 0.04
ACGTcount: A:0.17, C:0.22, G:0.32, T:0.29
Consensus pattern (26 bp):
GAGTTCGCCAGTCTGTATGGCAACTG
Found at i:25838620 original size:52 final size:52
Alignment explanation
Indices: 25838563--25838675 Score: 122
Period size: 52 Copynumber: 2.2 Consensus size: 52
25838553 TCTATTTTCG
* * ** *
25838563 GTGAGTGATC-AGGTTCCATTATGATTGTGTTTTAGATTAAGTTTTTAAAA-GT
1 GTGAGTGATCGA-GTTCCATTATGAGTATGTTCCAGACTAAG-TTTTAAAATGT
* * *
25838615 GTGAGTTATCGAGTTTCATTATGAGTATGTTCCATACTAAGTTTTAAAATGT
1 GTGAGTGATCGAGTTCCATTATGAGTATGTTCCAGACTAAGTTTTAAAATGT
25838667 GTGAGTGAT
1 GTGAGTGAT
25838676 TGGTAATTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
51 8 0.16
52 41 0.82
53 1 0.02
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.42
Consensus pattern (52 bp):
GTGAGTGATCGAGTTCCATTATGAGTATGTTCCAGACTAAGTTTTAAAATGT
Found at i:25839215 original size:52 final size:53
Alignment explanation
Indices: 25839159--25839270 Score: 149
Period size: 52 Copynumber: 2.1 Consensus size: 53
25839149 GAGTAAGAAT
** *
25839159 TTTTGTGAGCTTTCT-TGATGACTCACTCTGCATGGTCCTTT-A-TAGCATGAGC
1 TTTTGTGAGCTTTCTGT-ATGACGAACTCTGCATGCTCCTTTGAGT-GCATGAGC
*
25839211 TTTTGTGAGCTTTCTGTATGACGAATTCTGCATGCTCCTTTGAGTGCATGAGC
1 TTTTGTGAGCTTTCTGTATGACGAACTCTGCATGCTCCTTTGAGTGCATGAGC
25839264 TTTTGTG
1 TTTTGTG
25839271 TGTCCCATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
52 35 0.66
53 17 0.32
54 1 0.02
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (53 bp):
TTTTGTGAGCTTTCTGTATGACGAACTCTGCATGCTCCTTTGAGTGCATGAGC
Found at i:25846064 original size:20 final size:19
Alignment explanation
Indices: 25846039--25846091 Score: 79
Period size: 20 Copynumber: 2.7 Consensus size: 19
25846029 CTTATATTGC
25846039 TTTTTTTGCTGTTTCTGGTG
1 TTTTTTTGCTGTTT-TGGTG
25846059 TTTTTTTGCTGTTTTGGTG
1 TTTTTTTGCTGTTTTGGTG
*
25846078 TTATTTTTGTTGTT
1 TT-TTTTTGCTGTT
25846092 GTTTTAGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 7 0.23
20 24 0.77
ACGTcount: A:0.02, C:0.06, G:0.23, T:0.70
Consensus pattern (19 bp):
TTTTTTTGCTGTTTTGGTG
Found at i:25848644 original size:12 final size:12
Alignment explanation
Indices: 25848627--25848653 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25848617 TTTATATTAC
25848627 TTAATTTTTAAT
1 TTAATTTTTAAT
25848639 TTAATTTTTAAT
1 TTAATTTTTAAT
25848651 TTA
1 TTA
25848654 TCTATCTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTAATTTTTAAT
Found at i:25862689 original size:4 final size:4
Alignment explanation
Indices: 25862680--25862737 Score: 71
Period size: 4 Copynumber: 14.5 Consensus size: 4
25862670 GTGCCCCAAT
** * *
25862680 TTCA TTCA TTCA TTTG TTCA TTCA TTCA TTCA TCCA TTCA TTCA CTCA
1 TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA TTCA
*
25862728 TTCG TTCA TT
1 TTCA TTCA TT
25862738 TGTTTATTTA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.50
Consensus pattern (4 bp):
TTCA
Found at i:25870773 original size:17 final size:16
Alignment explanation
Indices: 25870750--25870793 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
25870740 AAAAAATACA
25870750 AAAAAAAAGAAGAAAG
1 AAAAAAAAGAAGAAAG
*
25870766 AGAAAAAAAGAAGAATG
1 A-AAAAAAAGAAGAAAG
*
25870783 AAAAAATAGAA
1 AAAAAAAAGAA
25870794 AATGACAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAAAAAGAAGAAAG
Found at i:25870785 original size:15 final size:15
Alignment explanation
Indices: 25870751--25870798 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
25870741 AAAAATACAA
*
25870751 AAAAAAAGAAGAAAGAG
1 AAAAAAAGAAG-AA-TG
25870768 AAAAAAAGAAGAATG
1 AAAAAAAGAAGAATG
25870783 AAAAAATAGAA-AATG
1 AAAAAA-AGAAGAATG
25870798 A
1 A
25870799 CAGCAAGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 12 0.41
16 6 0.21
17 11 0.38
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (15 bp):
AAAAAAAGAAGAATG
Found at i:25871273 original size:42 final size:42
Alignment explanation
Indices: 25871194--25871798 Score: 764
Period size: 42 Copynumber: 14.5 Consensus size: 42
25871184 AAGGAAAACA
* ***
25871194 TTCATTGCATTTAGAGG-CTAGGTGTGGAGGTTTATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
** *
25871235 TTCATTATATTTAGAGGCCCAGGTGTGCAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * *
25871277 TTCATTGTATTTAGAAGTCCAGGTATGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * *
25871319 TTCATTACATTTAGAGGCCCAAGTATGAAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* **
25871361 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * * * *
25871403 TTCATTGTATTTGGAAGCCCAAGTGTGGAGGTCCATTTAATT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* *
25871445 TTCATAGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* **
25871487 TTCATTGCATTTAAAGGCCCAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * * *
25871529 TTCATTGTATTTAGAGGCCCAGATGCGGAGGTCCATTTAATT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * *
25871571 TTCATAGCATTTAGAGGCCCAAGTGTGGAGGCCCATTTAATT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * *
25871613 TTCATAGCATTTAAAGGCCCAAGTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
*
25871655 TTCATTGCATTTAGAGGCCCAGTTGTGGAGGCCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* * * *
25871697 TTCATTACATTTGGAGGCCCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
* *
25871739 TTCATTGCATTTGGAGGCCCAGGTGTGGAGGTCCATTTAC-T
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
*
25871780 TTCATTGCAATTAGAGGCC
1 TTCATTGCATTTAGAGGCC
25871799 TAAGCGTATA
Statistics
Matches: 493, Mismatches: 70, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
41 33 0.07
42 460 0.93
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGCCCATTTACTT
Found at i:25872213 original size:3 final size:3
Alignment explanation
Indices: 25872207--25872243 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
25872197 CATCATCATC
25872207 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
25872244 GGGTTTCATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:25872801 original size:20 final size:19
Alignment explanation
Indices: 25872778--25872820 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
25872768 TTTTTTTATA
25872778 TTTTAAAGAAAACTTTTAAT
1 TTTTAAA-AAAACTTTTAAT
* *
25872798 TTTTAAATAAAGTTTTAAT
1 TTTTAAAAAAACTTTTAAT
25872817 TTTT
1 TTTT
25872821 TAACTATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (19 bp):
TTTTAAAAAAACTTTTAAT
Found at i:25872849 original size:147 final size:150
Alignment explanation
Indices: 25872685--25872970 Score: 388
Period size: 149 Copynumber: 1.9 Consensus size: 150
25872675 AACAATGTCA
*
25872685 AAATAAAAGCTTTGATTTTCAAGTAAAATAGTGATTTTCT-T-TAAAAAAGAGAAAGTTTA-GAT
1 AAATAAAAGCTTTGATTTTCAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAAAGTTTATG-T
* * * *
25872747 TTTTAAAAATGAAAATCTGTTTTTTT-TTATATTTTAAAG-AAAACTTTTAA-TTTTTAAATAAA
65 TTTTAAAAATAAAAATCTGTTTTTTTAAT-TA-TTTAAAGAAAAACTTTAAATTTTTTAAACAAA
25872809 GTTTTAATTTTTTAACTATTTCG
128 GTTTTAATTTTTTAACTATTTCG
* *
25872832 AAATAAAAG-TTTAGATTTTTAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAATGTTTATGT
1 AAATAAAAGCTTT-GATTTTCAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAAAGTTTATGT
* * *
25872896 TTTTCAAAATAAAAATTTGTTTTTTTAATTATTTAAAGAAAAAGTTTAAATTTTTTAAACAAAGT
65 TTTTAAAAATAAAAATCTGTTTTTTTAATTATTTAAAGAAAAACTTTAAATTTTTTAAACAAAGT
*
25872961 TTTGATTTTT
130 TTTAATTTTT
25872971 AAGTAAAGTA
Statistics
Matches: 121, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
146 3 0.02
147 35 0.29
148 8 0.07
149 51 0.42
150 24 0.20
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (150 bp):
AAATAAAAGCTTTGATTTTCAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAAAGTTTATGTT
TTTAAAAATAAAAATCTGTTTTTTTAATTATTTAAAGAAAAACTTTAAATTTTTTAAACAAAGTT
TTAATTTTTTAACTATTTCG
Found at i:25873089 original size:121 final size:119
Alignment explanation
Indices: 25872837--25873091 Score: 347
Period size: 121 Copynumber: 2.1 Consensus size: 119
25872827 TTTCGAAATA
* * *
25872837 AAAGTTTAGATTTTTAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAATGTTTATGTTTTTCA
1 AAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAAAGTTTATGTTTTTAA
* * *
25872902 AAATAAAAATTTGTTTTTTTAATTATTTAAAGAAAAAGTTTAAATTTTTTAAAC
66 AAATAAAAATCTGATTTTTTAATGATTTAAAGAAAAAGTTTAAATTTTTTAAAC
*
25872956 AAAGTTTTGATTTTTAAGTAAAGTAGTGATTTTCAT-TAAAAAAAAGAAAGAAAGTTTA-GATTT
1 AAAGTTTTGATTTTTAAGTAAAATAGTGATTTTC-TCTAAAAAAAAG--AGAAAGTTTATG-TTT
* *
25873019 TTAAAAAATAAAAATCT-ATTTTTTAGTGATTTTAAAGAAAAATTTTAAA-TTTTTAAAC
62 TT-AAAAATAAAAATCTGATTTTTTAATGA-TTTAAAGAAAAAGTTTAAATTTTTTAAAC
25873077 AAAGTTTTGATTTTT
1 AAAGTTTTGATTTTT
25873092 TTAACTATTT
Statistics
Matches: 121, Mismatches: 9, Indels: 10
0.86 0.06 0.07
Matches are distributed among these distances:
119 42 0.35
120 2 0.02
121 47 0.39
122 30 0.25
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.43
Consensus pattern (119 bp):
AAAGTTTTGATTTTTAAGTAAAATAGTGATTTTCTCTAAAAAAAAGAGAAAGTTTATGTTTTTAA
AAATAAAAATCTGATTTTTTAATGATTTAAAGAAAAAGTTTAAATTTTTTAAAC
Found at i:25874547 original size:239 final size:236
Alignment explanation
Indices: 25874131--25874597 Score: 772
Period size: 239 Copynumber: 2.0 Consensus size: 236
25874121 ATAATAATAG
* * *
25874131 TGATAAAAGATCGAATAAGTTGTACATGAATTTTAATATTTCTCTTAATTCGTTAGTAATTTTTA
1 TGATAAAAGATCGAATAAATTGTACATAAATTTTAATATTTCTCTTAATTCATTAGTAATTTTTA
*
25874196 GGTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATTTTACTAAAATTATTTA
66 GGTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATCTTACTAAAATTATTTA
* *
25874261 AGTATCTTTTAGGGTTCTCGTTAGAAATAAAAATCTCTAATTTAAGTTTTAAATTAGATAAGTTT
131 AGTATCCTTTAGGGTTCTCATTAGAAATAAAAATCTCTAATTTAAGTTTTAAATTAGATAAGTTT
** *
25874326 GGTGAACATGTCTTAGTCAAGTTACAAGTAAATCAGAGTAA
196 GGTGAACACATCTTAGCCAAGTTACAAGTAAATCAGAGTAA
*
25874367 TGATAAAAGATCGAATAAATTGTAGATAAATTTTAATATTTCTCTTAATTCATTAGTAATTTTTT
1 TGATAAAAGATCGAATAAATTGTACATAAATTTTAATATTTCTCTTAATTCATTAGTAA--TTTT
* *
25874432 TAGGTTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATCTTGCTAGAATTAT
64 TAGG-TTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATCTTACTAAAATTAT
* * *
25874497 TTAGGTATCCTTTAGGGTTCTTATTAGAAGTAAAAATCTCTAATTTAAGTTTTAAATTAGATAAG
128 TTAAGTATCCTTTAGGGTTCTCATTAGAAATAAAAATCTCTAATTTAAGTTTTAAATTAGATAAG
25874562 TTTGGTGAACACATCTTAGCCAAGTTACAAGTAAAT
193 TTTGGTGAACACATCTTAGCCAAGTTACAAGTAAAT
25874598 TGGAGGCATT
Statistics
Matches: 213, Mismatches: 15, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
236 55 0.26
238 8 0.04
239 150 0.70
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (236 bp):
TGATAAAAGATCGAATAAATTGTACATAAATTTTAATATTTCTCTTAATTCATTAGTAATTTTTA
GGTTTTTTAGGATTCTAAAATAGAATTAATTTTAAGAATTGAAGGTATCTTACTAAAATTATTTA
AGTATCCTTTAGGGTTCTCATTAGAAATAAAAATCTCTAATTTAAGTTTTAAATTAGATAAGTTT
GGTGAACACATCTTAGCCAAGTTACAAGTAAATCAGAGTAA
Found at i:25878351 original size:3 final size:3
Alignment explanation
Indices: 25878345--25878377 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
25878335 TTGTAGGAGG
25878345 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
25878378 TAACATTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:25883740 original size:15 final size:15
Alignment explanation
Indices: 25883720--25883760 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
25883710 TGGTAGGTGT
25883720 ATGGAAATGGATTTA
1 ATGGAAATGGATTTA
25883735 ATGGAAATGGATTTA
1 ATGGAAATGGATTTA
25883750 ATGGAAATGGA
1 ATGGAAATGGA
25883761 AAGGGGCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
ATGGAAATGGATTTA
Found at i:25884806 original size:11 final size:11
Alignment explanation
Indices: 25884778--25884835 Score: 71
Period size: 11 Copynumber: 5.0 Consensus size: 11
25884768 CGGAGTAGAA
*
25884778 TTTATTTATTTA
1 TTTATTT-TTTC
25884790 TTTATTTTTTC
1 TTTATTTTTTC
25884801 TTTATTTTTTC
1 TTTATTTTTTC
*
25884812 TTTCTTTTTTC
1 TTTATTTTTTC
25884823 TTTTCATTTTTTC
1 -TTT-ATTTTTTC
25884836 AACATTAGCA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
11 24 0.59
12 10 0.24
13 7 0.17
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTATTTTTTC
Found at i:25884806 original size:15 final size:15
Alignment explanation
Indices: 25884786--25884818 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
25884776 AATTTATTTA
25884786 TTTATTTATTT-TTTC
1 TTTATTT-TTTCTTTC
25884801 TTTATTTTTTCTTTC
1 TTTATTTTTTCTTTC
25884816 TTT
1 TTT
25884819 TTTCTTTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTATTTTTTCTTTC
Found at i:25888056 original size:60 final size:59
Alignment explanation
Indices: 25887965--25888114 Score: 153
Period size: 60 Copynumber: 2.5 Consensus size: 59
25887955 CCCCTGTTTT
* * * *
25887965 AATTAAATTTTGA-TCCCAAACTTTTCAAAAATTATA-TTTAGAC-CTCCGAACTTTCCAAA
1 AATT-AATTTTGACCCCCAAAATTTTTAAAAATTATATTTTA-ACTCT-CAAACTTTCCAAA
* * *
25888024 AATTATATTTTGACCCCCAAATTTTTTAAAAATTATATTTTAACTCTTAAATTTTCCAAA
1 AATTA-ATTTTGACCCCCAAAATTTTTAAAAATTATATTTTAACTCTCAAACTTTCCAAA
* *
25888084 AATTCAAATTTGACCCCCAAAATTTCTAAAA
1 AATT-AATTTTGACCCCCAAAATTTTTAAAA
25888115 TTCCTTTTTT
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
58 1 0.01
59 11 0.14
60 58 0.75
61 7 0.09
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (59 bp):
AATTAATTTTGACCCCCAAAATTTTTAAAAATTATATTTTAACTCTCAAACTTTCCAAA
Found at i:25888064 original size:30 final size:30
Alignment explanation
Indices: 25887965--25888114 Score: 124
Period size: 30 Copynumber: 5.0 Consensus size: 30
25887955 CCCCTGTTTT
* * *
25887965 AATTAAATTTTGA-TCCCAAACTTTTCAAA
1 AATTATATTTTGACCCCCAAACTTTCCAAA
* * *
25887994 AATTATATTTAGACCTCCGAACTTTCCAAA
1 AATTATATTTTGACCCCCAAACTTTCCAAA
* **
25888024 AATTATATTTTGACCCCCAAATTTTTTAAA
1 AATTATATTTTGACCCCCAAACTTTCCAAA
* * ** *
25888054 AATTATATTTTAACTCTTAAATTTTCCAAA
1 AATTATATTTTGACCCCCAAACTTTCCAAA
* * *
25888084 AATTCA-AATTTGACCCCCAAAATTTCTAAA
1 AATT-ATATTTTGACCCCCAAACTTTCCAAA
25888114 A
1 A
25888115 TTCCTTTTTT
Statistics
Matches: 94, Mismatches: 25, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
29 11 0.12
30 82 0.87
31 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.03, T:0.38
Consensus pattern (30 bp):
AATTATATTTTGACCCCCAAACTTTCCAAA
Found at i:25901965 original size:70 final size:70
Alignment explanation
Indices: 25901764--25901974 Score: 234
Period size: 70 Copynumber: 3.1 Consensus size: 70
25901754 AGATCATTGT
* * * * * **
25901764 CATGTTAAAGTTGCAAAGATTCTTCCCACCATTTTGATGTTGCAAAGTTCAGTTTGGGTCCT-C-
1 CATGTTGAAGTTGCAAGGGTTCTTCCCACCATGTTAATGTTGCAAAGTTCAGAATGGGTCCTCCT
25901827 C-CGC
66 CTCGC
* **
25901831 CATGTAGAAGTTGCAAGGGTTCTTCCCACCATGTTGAA-GTTGCAAAGTTTGGAAT-GGTCACTC
1 CATGTTGAAGTTGCAAGGGTTCTTCCCACCATGTT-AATGTTGCAAAGTTCAGAATGGGTC-CTC
25901894 CTCTCGC
64 CTCTCGC
*** *
25901901 CATGTTGAAGTTGCAAGGGTTCTTCTTGCCATGTTAATGTTGCAAAGTTCAAAATGGGTCCTCCT
1 CATGTTGAAGTTGCAAGGGTTCTTCCCACCATGTTAATGTTGCAAAGTTCAGAATGGGTCCTCCT
*
25901966 CTTGC
66 CTCGC
25901971 CATG
1 CATG
25901975 AAGTTGAAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
66 4 0.03
67 45 0.38
68 2 0.02
69 3 0.03
70 61 0.51
71 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (70 bp):
CATGTTGAAGTTGCAAGGGTTCTTCCCACCATGTTAATGTTGCAAAGTTCAGAATGGGTCCTCCT
CTCGC
Found at i:25902347 original size:108 final size:106
Alignment explanation
Indices: 25902136--25902392 Score: 255
Period size: 108 Copynumber: 2.4 Consensus size: 106
25902126 AAAATGATAT
* * *
25902136 AATCTTCGACCCACTCCCAATATTTGTTGAAGTCTCCAAAAATCTTAAAGTCGGCTCGTGCATCA
1 AATCTTCGATCCACTCCCAATATTT-TTGAAGTCTCCAAAAATCTTAAAGTCGGCTCGCGCATAA
* * * ** * *
25902201 TATGCCTCGACCATCGCTAAAATCTTGACGGAATGATATATC
65 TATGCCTCAACCATCACCAAAATCTTGACAAAACGATATAGC
* * * *
25902243 ATATCTTCGATTCACTCCCAATATTTTCTGACGTCTCCAAAAATCTTGAAGTTGGCTCGCGCATA
1 A-ATCTTCGATCCACTCCCAATATTTT-TGAAGTCTCCAAAAATCTTAAAGTCGGCTCGCGCATA
* * * * *
25902308 ATGTGCGTCAACCATTACCAAAGTTTTGGA-AAAACGATATAGC
64 ATATGCCTCAACCATCACCAAAATCTT-GACAAAACGATATAGC
* * *
25902351 AAGCCTTCGATGCACTCCCAATATTTTTTGAAATCTCCAAAA
1 AA-TCTTCGATCCACTCCCAATA-TTTTTGAAGTCTCCAAAA
25902393 CATTTTTGAA
Statistics
Matches: 122, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
107 3 0.02
108 113 0.93
109 6 0.05
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (106 bp):
AATCTTCGATCCACTCCCAATATTTTTGAAGTCTCCAAAAATCTTAAAGTCGGCTCGCGCATAAT
ATGCCTCAACCATCACCAAAATCTTGACAAAACGATATAGC
Found at i:25902821 original size:29 final size:30
Alignment explanation
Indices: 25902761--25902836 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
25902751 ATTTTACGTG
* * *
25902761 AATTTTAATTTAATATGCAATTATATATAT-A
1 AATTTTAATTT--GATGCAATTATACACATAA
*
25902792 AATTTTAATTTGATGTAATTATACACATAA
1 AATTTTAATTTGATGCAATTATACACATAA
25902822 AATTTTAATTGTGAT
1 AATTTTAATT-TGAT
25902837 TCAAATGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 13 0.33
30 11 0.28
31 15 0.38
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (30 bp):
AATTTTAATTTGATGCAATTATACACATAA
Found at i:25927801 original size:19 final size:18
Alignment explanation
Indices: 25927779--25927821 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
25927769 ATTTTTTAAA
25927779 ATTTTTATCAACTTTTTAT
1 ATTTTTATCAA-TTTTTAT
* * *
25927798 ATTTTTTTGAATTTTTTT
1 ATTTTTATCAATTTTTAT
25927816 ATTTTT
1 ATTTTT
25927822 TGAATAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTTTATCAATTTTTAT
Found at i:25927812 original size:18 final size:18
Alignment explanation
Indices: 25927791--25927840 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
25927781 TTTTATCAAC
25927791 TTTTTATATTTTTTTGAA
1 TTTTTATATTTTTTTGAA
*
25927809 TTTTTTTA-TTTTTTGAA
1 TTTTTATATTTTTTTGAA
*
25927826 TAATTTATACTTTTT
1 T-TTTTATA-TTTTT
25927841 AAATTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 10 0.38
18 12 0.46
20 4 0.15
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (18 bp):
TTTTTATATTTTTTTGAA
Found at i:25927840 original size:20 final size:18
Alignment explanation
Indices: 25927793--25927840 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
25927783 TTATCAACTT
*
25927793 TTTATATTTTTTTGAATT
1 TTTATATTTTTTTGAATA
*
25927811 TTTTTA-TTTTTTGAATAA
1 TTTATATTTTTTTGAAT-A
*
25927829 TTTATACTTTTT
1 TTTATATTTTTT
25927841 AAATTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 10 0.40
18 10 0.40
19 5 0.20
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (18 bp):
TTTATATTTTTTTGAATA
Found at i:25945113 original size:17 final size:19
Alignment explanation
Indices: 25945087--25945125 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
25945077 TAAGTTTTTC
25945087 TAAAATTTAAAT-TTAAAA
1 TAAAATTTAAATGTTAAAA
*
25945105 TAAAA-TTAAATGTTCAAA
1 TAAAATTTAAATGTTAAAA
25945123 TAA
1 TAA
25945126 CAAAGTCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (19 bp):
TAAAATTTAAATGTTAAAA
Found at i:25947148 original size:29 final size:26
Alignment explanation
Indices: 25947083--25947347 Score: 93
Period size: 29 Copynumber: 9.1 Consensus size: 26
25947073 CTTTCTAGTC
* *
25947083 CCCAAACTTTCCAAATTTCCATTTTTGAC
1 CCCAAAC-TTCCAAAATTCCA-TTTT-AA
25947112 CCCGAAACTTCCAAAAATTACCATTTTACA
1 CCC-AAACTTCC-AAAATT-CCATTTTA-A
* *
25947142 CCTAAACTTTCTAAAATTCCATTTTTAA
1 CCCAAAC-TTCCAAAATTCCA-TTTTAA
* * *
25947170 CCCCAATTTCACCCAAAATTACCATTTTACC
1 CCCAAACTT---CCAAAATT-CCATTTTA-A
*
25947201 CCCAAGCTTTCCAAAATTCCATTTTAA
1 CCCAAAC-TTCCAAAATTCCATTTTAA
* * * *
25947228 CCTC-GATTTCACCCAAAATTACCATTCTAC
1 CC-CAAACTT---CCAAAATT-CCATTTTAA
* *
25947258 CCTCGAACTTTCCAAAATCCCATTTTTAA
1 CC-CAAAC-TTCCAAAATTCCA-TTTTAA
** *
25947287 CCCCGATTTCACCAAAAATTACCATTTT-A
1 CCCAAACTT--CC-AAAATT-CCATTTTAA
25947316 CCCTTAAACTTTCCAAAATTCCATTTTAA
1 CCC--AAAC-TTCCAAAATTCCATTTTAA
25947345 CCC
1 CCC
25947348 CTAATTTTCT
Statistics
Matches: 178, Mismatches: 30, Indels: 56
0.67 0.11 0.21
Matches are distributed among these distances:
26 2 0.01
27 6 0.03
28 29 0.16
29 68 0.38
30 52 0.29
31 15 0.08
32 6 0.03
ACGTcount: A:0.33, C:0.32, G:0.02, T:0.33
Consensus pattern (26 bp):
CCCAAACTTCCAAAATTCCATTTTAA
Found at i:25947259 original size:58 final size:59
Alignment explanation
Indices: 25947082--25947348 Score: 330
Period size: 59 Copynumber: 4.6 Consensus size: 59
25947072 GCTTTCTAGT
* * * *
25947082 CCCC-AAACTTTCCAAATTTCCATTTTTGACCCCGAAACTT--CCAAAAATTACCATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCG--ATTTCACCCAAAATTACCATTTTA
* * *
25947140 CACCTAAACTTTCTAAAATTCCATTTTTAACCCCAATTTCACCCAAAATTACCATTTTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCCAAAATTACCATTTTA
* * * *
25947199 CCCCCAAGCTTTCCAAAATTCCA-TTTTAACCTCGATTTCACCCAAAATTACCATTCTA
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCCAAAATTACCATTTTA
* * *
25947257 -CCCTCGAACTTTCCAAAATCCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTA
1 CCCCT-AAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCCAAAATTACCATTTTA
*
25947316 CCCTTAAACTTTCCAAAATTCCA-TTTTAACCCC
1 CCCCTAAACTTTCCAAAATTCCATTTTTAACCCC
25947349 TAATTTTCTC
Statistics
Matches: 179, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
57 6 0.03
58 60 0.34
59 110 0.61
60 3 0.02
ACGTcount: A:0.33, C:0.32, G:0.02, T:0.33
Consensus pattern (59 bp):
CCCCTAAACTTTCCAAAATTCCATTTTTAACCCCGATTTCACCCAAAATTACCATTTTA
Found at i:25947289 original size:117 final size:117
Alignment explanation
Indices: 25947082--25947346 Score: 347
Period size: 117 Copynumber: 2.3 Consensus size: 117
25947072 GCTTTCTAGT
* * * * * *
25947082 CCCCAAACTTTCCAAATTTCCATTTTTGACCCCGAAACTT--CCAAAAATTACCATTTTACACCT
1 CCCCAAACTTTCCAAAATTCCA-TTTTAACCTCG--ATTTCACCCAAAATTACCATTCTACACCT
* * *
25947145 AAACTTTCTAAAATTCCATTTTTAACCCCAATTTCACCCAAAATTACCATTTTAC
63 AAACTTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
* *
25947200 CCCCAAGCTTTCCAAAATTCCATTTTAACCTCGATTTCACCCAAAATTACCATTCTAC-CCTCGA
1 CCCCAAACTTTCCAAAATTCCATTTTAACCTCGATTTCACCCAAAATTACCATTCTACACCT-AA
*
25947264 ACTTTCCAAAATCCCATTTTTAACCCCGATTTCACCAAAAATTACCATTTTAC
65 ACTTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
**
25947317 CCTTAAACTTTCCAAAATTCCATTTTAACC
1 CCCCAAACTTTCCAAAATTCCATTTTAACC
25947347 CCTAATTTTC
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
115 3 0.02
116 3 0.02
117 103 0.80
118 20 0.16
ACGTcount: A:0.33, C:0.32, G:0.02, T:0.33
Consensus pattern (117 bp):
CCCCAAACTTTCCAAAATTCCATTTTAACCTCGATTTCACCCAAAATTACCATTCTACACCTAAA
CTTTCCAAAATCCCATTTTTAACCCCAATTTCACCAAAAATTACCATTTTAC
Found at i:25967741 original size:30 final size:31
Alignment explanation
Indices: 25967696--25967755 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
25967686 GGGATGAGAT
* *
25967696 GGGAGAGGAGTAAAAGTTTTGAGGGGAAAGA
1 GGGAGAGGAATAAAAGTTTTGAGGGAAAAGA
*
25967727 GGGA-AGGAATAAAAGTTTTTAGGGAAAAG
1 GGGAGAGGAATAAAAGTTTTGAGGGAAAAG
25967756 TAAAAAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.40, T:0.18
Consensus pattern (31 bp):
GGGAGAGGAATAAAAGTTTTGAGGGAAAAGA
Found at i:25969302 original size:3 final size:3
Alignment explanation
Indices: 25969294--25969322 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
25969284 TTCATTCATC
25969294 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25969323 CAACAACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25969327 original size:3 final size:3
Alignment explanation
Indices: 25969321--25969361 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
25969311 TAATAATAAT
*
25969321 AAC AAC AAC AAC AAC AGC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
25969362 TATTCAGATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.32, G:0.02, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:25971936 original size:21 final size:22
Alignment explanation
Indices: 25971896--25971936 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
25971886 CTTTAATGTT
*
25971896 CAATTTGGTAACTGAGTTTTAC
1 CAATTTGATAACTGAGTTTTAC
*
25971918 CAATTTGAT-ACTTAGTTTT
1 CAATTTGATAACTGAGTTTT
25971937 TTTTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (22 bp):
CAATTTGATAACTGAGTTTTAC
Found at i:25979275 original size:13 final size:13
Alignment explanation
Indices: 25979259--25979283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25979249 TTAATTTTAA
25979259 AATTGAAATTGAT
1 AATTGAAATTGAT
25979272 AATTGAAATTGA
1 AATTGAAATTGA
25979284 AAAATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (13 bp):
AATTGAAATTGAT
Found at i:25980161 original size:30 final size:30
Alignment explanation
Indices: 25980120--25980189 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
25980110 ATTTTTCTAC
* * *
25980120 ATCCTTAATCCCTTATTCCTAAATCGTGAA
1 ATCCCTAATCCCTTATTCCCAAATCATGAA
25980150 ATCCCTAATCCCTTATTCCCAAATCATGAA
1 ATCCCTAATCCCTTATTCCCAAATCATGAA
25980180 ATCCCATAAT
1 ATCCC-TAAT
25980190 TTCCGGAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 32 0.89
31 4 0.11
ACGTcount: A:0.33, C:0.30, G:0.04, T:0.33
Consensus pattern (30 bp):
ATCCCTAATCCCTTATTCCCAAATCATGAA
Found at i:25982085 original size:53 final size:51
Alignment explanation
Indices: 25982010--25982196 Score: 229
Period size: 51 Copynumber: 3.6 Consensus size: 51
25982000 ATTTCATTTA
* **
25982010 ATACTCACGATGACA-TATAGTCATCGGACCTCTTGTTCCATATAGGAATTCAT
1 ATACTCACGATGACACT-GAGTCATCGGACCT-TTAATCCATATAGG-ATTCAT
25982063 ATACTCACGATGACACTGAGTCATCGGACCTTTAATCCATCAT-GGATTCAT
1 ATACTCACGATGACACTGAGTCATCGGACCTTTAATCCAT-ATAGGATTCAT
* * *
25982114 TTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAAGGATTCAT
1 ATACTCACGATGACACTGAGTCATCGGACCTTTAATCCATATAGGATTCAT
* *
25982165 TTACTCACGATGACTCTTG-GT-ATCGGACCTTT
1 ATACTCACGATGACAC-TGAGTCATCGGACCTTT
25982197 TCATTTATAG
Statistics
Matches: 122, Mismatches: 8, Indels: 11
0.87 0.06 0.08
Matches are distributed among these distances:
50 12 0.10
51 69 0.57
52 10 0.08
53 30 0.25
54 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
ATACTCACGATGACACTGAGTCATCGGACCTTTAATCCATATAGGATTCAT
Found at i:25982348 original size:8 final size:9
Alignment explanation
Indices: 25982335--25982370 Score: 51
Period size: 8 Copynumber: 4.3 Consensus size: 9
25982325 TACAACCCAA
25982335 ATTTTA-TT
1 ATTTTATTT
25982343 ATTTTATTT
1 ATTTTATTT
25982352 A-TTTATTT
1 ATTTTATTT
25982360 A-TTTATTT
1 ATTTTATTT
25982368 ATT
1 ATT
25982371 AAATAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 22 0.85
9 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (9 bp):
ATTTTATTT
Found at i:25982354 original size:4 final size:4
Alignment explanation
Indices: 25982345--25982370 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
25982335 ATTTTATTAT
25982345 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
25982371 AAATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:25982389 original size:16 final size:16
Alignment explanation
Indices: 25982370--25982411 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25982360 ATTTATTTAT
25982370 TAAATAAATAA-ACAAA
1 TAAATAAATAATA-AAA
*
25982386 TAAAGAAATAATAAAA
1 TAAATAAATAATAAAA
*
25982402 TTAATAAATA
1 TAAATAAATA
25982412 TATACAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (16 bp):
TAAATAAATAATAAAA
Found at i:25995476 original size:80 final size:80
Alignment explanation
Indices: 25995343--25996311 Score: 1447
Period size: 80 Copynumber: 12.2 Consensus size: 80
25995333 AGTTATAACC
* * *
25995343 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCACCCGATGTTTTACCTCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
25995408 GGTAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
25995423 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGATCATCCAATCTTTTA-CCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
25995487 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
25995502 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
25995567 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
25995582 TCAAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
25995647 GGCAGATTGAAGAAA
66 GGCAGATTGAAGAAA
*
25995662 TCAAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATG
*
25995725 GGGCAGATTGAAAAAA
65 GGGCAGATTGAAGAAA
*
25995741 TCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
25995806 GGTAGATTGAAGAAA
66 GGCAGATTGAAGAAA
* *
25995821 TCAAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATG
*
25995884 GGGCAGATTGAAAAAA
65 GGGCAGATTGAAGAAA
* *
25995900 TCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATG
*
25995963 GGGCAGATTGAAAAAA
65 GGGCAGATTGAAGAAA
* * *
25995979 TCCAATCTTTTACCCTAACTAGAGGGCAGGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCAT-G
25996044 GGGCAGATTGAAGAAA
65 GGGCAGATTGAAGAAA
* * *
25996060 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTAAAGACCATCTGATATTTTACCCCGATCATGG
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
* *
25996125 GGTAAATTGAAGAAA
66 GGCAGATTGAAGAAA
* * * * * *
25996140 TCTAATATTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCTGATTATGA
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
25996205 GGCAAATTGAAGAAA
66 GGCAGATTGAAGAAA
* * * * * * *
25996220 TCTAATCTTTTACCCTAACCAAAGGGC-A-ATTGAAGATCATCAGATCTCTTACCTCGACCATGA
1 TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
*
25996283 GGC-TATTGAA-ACAA
66 GGCAGATTGAAGA-AA
25996297 TCTAATCTTTTACCC
1 TCTAATCTTTTACCC
25996312 CTAAAGTTAT
Statistics
Matches: 832, Mismatches: 48, Indels: 21
0.92 0.05 0.02
Matches are distributed among these distances:
76 1 0.00
77 23 0.03
78 35 0.04
79 300 0.36
80 396 0.48
81 77 0.09
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (80 bp):
TCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGG
GGCAGATTGAAGAAA
Found at i:25995635 original size:159 final size:160
Alignment explanation
Indices: 25995346--25996311 Score: 1441
Period size: 159 Copynumber: 6.1 Consensus size: 160
25995336 TATAACCTCT
* * * *
25995346 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCACCCGATGTTTTACCTCGATCATGGGGT
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
* *
25995411 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGATCATCCAATCTTTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTA
*
25995476 -CCCGATCATGGGGCAGATTGAAGAAATCC
131 CCCCGATCATGGGGCAGATTGAAGAAATCA
25995505 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
*
25995570 AGATTGAAGAAATCAAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTA
25995635 CCCCGATCATGGGGCAGATTGAAGAAATCA
131 CCCCGATCATGGGGCAGATTGAAGAAATCA
25995665 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATGGGG
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATGGGG
* *
25995728 CAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTT
65 CAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTT
*
25995793 ACCCCGATCATGGGGTAGATTGAAGAAATCA
130 ACCCCGATCATGGGGCAGATTGAAGAAATCA
*
25995824 AATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATGGGG
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATGGGG
* * *
25995887 CAGATTGAAAAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAAT-CGA-CTTT
65 CAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTT
* *
25995950 TACCCCGATCATGGGGCAGATTGAAAAAATCC
129 TACCCCGATCATGGGGCAGATTGAAGAAATCA
* *
25995982 AATCTTTTACCCTAACTAGAGGGCAGGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGG
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCAT-GGGG
* * *
25996047 CAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTAAAGACCATCTGATATTTT
65 CAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTT
* * *
25996112 ACCCCGATCATGGGGTAAATTGAAGAAATCT
130 ACCCCGATCATGGGGCAGATTGAAGAAATCA
* * * * * *
25996143 AATATTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTACCCTGATTATGAGGC
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
* * * * *
25996208 AAATTGAAGAAATCTAATCTTTTACCCTAACCAAAGGGC-A-ATTGAAGATCATCAGATCTCTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTA
* * * * *
25996271 CCTCGACCATGAGGC-TATTGAA-ACAATCT
131 CCCCGATCATGGGGCAGATTGAAGA-AATCA
25996300 AATCTTTTACCC
1 AATCTTTTACCC
25996312 CTAAAGTTAT
Statistics
Matches: 752, Mismatches: 46, Indels: 20
0.92 0.06 0.02
Matches are distributed among these distances:
156 1 0.00
157 24 0.03
158 101 0.13
159 372 0.49
160 166 0.22
161 88 0.12
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (160 bp):
AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTA
CCCCGATCATGGGGCAGATTGAAGAAATCA
Found at i:25995765 original size:239 final size:239
Alignment explanation
Indices: 25995346--25996311 Score: 1464
Period size: 239 Copynumber: 4.1 Consensus size: 239
25995336 TATAACCTCT
* * * *
25995346 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCACCCGATGTTTTACCTCGATCATGGGGT
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
* *
25995411 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGATCATCCAATCTTTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCAT-CGATCTTTTA
*
25995476 -CCCGATCATGGGGCAGATTGAAGAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA
130 CCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA
25995540 CCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCA
195 CCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCA
25995585 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
*
25995650 AGATTGAAGAAATCAAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCAATCGA-CTTTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCGATCTTTTA
25995714 CCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA
130 CCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA
*
25995779 CCATCCGATCTTTTACCCCGATCATGGGGTAGATTGAAGAAATCA
195 CCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCA
*
25995824 AATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAAT-CGA-CTTTTACCCCGATCATGGGG
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCCGATCTTTTACCCCGATCATGGGG
* * *
25995887 CAGATTGAAAAAATCCAATCTTTTACCCTAACTAGAGGGCAAGATTGAAGACCAATCGA-CTTTT
65 CAGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACC-ATCGATCTTTT
* *
25995951 ACCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACTAGAGGGCAGGATTGAAG
129 ACCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAG
*
25996016 ACCATCCGATCTTTTACCCCGATCATGGGGGCAGATTGAAGAAATCT
194 ACCATCCGATCTTTTACCCCGATCAT-GGGGCAGATTGAAGAAATCA
* * * *
25996063 AATCTTTTACCCTAACCAGAGGGCAAGATTAAAGACCATCTGATATTTTACCCCGATCATGGGGT
1 AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
* * *
25996128 AAATTGAAGAAATCTAATATTTTACCCTAACTAGAGGGCAAGATTGAAGACCATCTGATCTTTTA
66 AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATC-GATCTTTTA
* * * * * * *
25996193 CCCTGATTATGAGGCAAATTGAAGAAATCTAATCTTTTACCCTAACCAAAGGGC-A-ATTGAAGA
130 CCCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGA
* * * * * * * *
25996256 TCATCAGATCTCTTACCTCGACCATGAGGC-TATTGAA-ACAATCT
195 CCATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGA-AATCA
25996300 AATCTTTTACCC
1 AATCTTTTACCC
25996312 CTAAAGTTAT
Statistics
Matches: 676, Mismatches: 42, Indels: 20
0.92 0.06 0.03
Matches are distributed among these distances:
236 1 0.00
237 23 0.03
238 182 0.27
239 345 0.51
240 73 0.11
241 52 0.08
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (239 bp):
AATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCCGATCTTTTACCCCGATCATGGGGC
AGATTGAAGAAATCTAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGACCATCGATCTTTTAC
CCCGATCATGGGGCAGATTGAAAAAATCCAATCTTTTACCCTAACCAGAGGGCAAGATTGAAGAC
CATCCGATCTTTTACCCCGATCATGGGGCAGATTGAAGAAATCA
Found at i:25996845 original size:14 final size:13
Alignment explanation
Indices: 25996816--25996841 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25996806 TACAACCCAA
25996816 ATTTTATTTTTTT
1 ATTTTATTTTTTT
25996829 ATTTTATTTTTTT
1 ATTTTATTTTTTT
25996842 TATTAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
ATTTTATTTTTTT
Found at i:25996885 original size:16 final size:16
Alignment explanation
Indices: 25996845--25996886 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25996835 TTTTTTTTAT
25996845 TAAATAAATAAACAAA
1 TAAATAAATAAACAAA
*
25996861 TAAAGAAATAATA-AAA
1 TAAATAAATAA-ACAAA
*
25996877 TTAATAAATA
1 TAAATAAATA
25996887 TATACAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (16 bp):
TAAATAAATAAACAAA
Found at i:26005626 original size:51 final size:51
Alignment explanation
Indices: 26005556--26005694 Score: 215
Period size: 51 Copynumber: 2.7 Consensus size: 51
26005546 ACATATAGGA
* * * *
26005556 ATTCATATACTCACGATGACACTGAGTCATCGGACCTTTAATCCATCATCG
1 ATTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAACG
* *
26005607 ATTCATTTACTCATGATGACACTTAGTCATCGGACCTTTAATCCATAAAGG
1 ATTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAACG
*
26005658 ATTCATTTACTCACGATGACACTTAGTCATTGGACCT
1 ATTCATTTACTCACGATGACACTTAGTCATCGGACCT
26005695 CCGTAAAGGA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 80 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
ATTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAATCCATAAACG
Found at i:26005729 original size:46 final size:47
Alignment explanation
Indices: 26005547--26005734 Score: 171
Period size: 51 Copynumber: 3.8 Consensus size: 47
26005537 CCTCTTGTTA
* * * *
26005547 CATATAGGAATTCATATACTCACGATGACACTGAGTCATCGGACCTTTAATC
1 CATAAAGG-ATTCATTTACTCATGATGACACTTAGTCATCGGACC--T--TC
* **
26005599 CATCATCGATTCATTTACTCATGATGACACTTAGTCATCGGACCTTTAATC
1 CATAAAGGATTCATTTACTCATGATGACACTTAGTCATCGGACC--T--TC
* *
26005650 CATAAAGGATTCATTTACTCACGATGACACTTAGTCATTGGACC-TC
1 CATAAAGGATTCATTTACTCATGATGACACTTAGTCATCGGACCTTC
* * * *
26005696 CGTAAAGGATTCATTTACGCATGATAACTCTTAGTCATC
1 CATAAAGGATTCATTTACTCATGATGACACTTAGTCATC
26005735 AAACCTTTTC
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
46 35 0.30
51 79 0.67
52 4 0.03
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (47 bp):
CATAAAGGATTCATTTACTCATGATGACACTTAGTCATCGGACCTTC
Found at i:26011997 original size:51 final size:51
Alignment explanation
Indices: 26011924--26012115 Score: 312
Period size: 51 Copynumber: 3.8 Consensus size: 51
26011914 CCGTATAGAA
* * * * *
26011924 ATTCATATACTCACGATGACACTGAGTCATCGGACCTTTAATTCATTATGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
* *
26011975 ATTCATTTACTCAAGATGACACTTAGTCATCAGACCTTTAATTCGTAAAGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
*
26012026 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATCCATAAAGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
26012077 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTT
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTT
26012116 TCGTTTATAG
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 131 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (51 bp):
ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
Found at i:26018429 original size:21 final size:21
Alignment explanation
Indices: 26018404--26018455 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
26018394 TTTACTAATT
26018404 CTACCGATACAAGTCATGCAA
1 CTACCGATACAAGTCATGCAA
*
26018425 TTACCTG-TACAAGTCATGCAA
1 CTACC-GATACAAGTCATGCAA
*
26018446 CTATCGATAC
1 CTACCGATAC
26018456 CAAAAACTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 1 0.04
21 24 0.92
22 1 0.04
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (21 bp):
CTACCGATACAAGTCATGCAA
Found at i:26019323 original size:51 final size:51
Alignment explanation
Indices: 26019137--26019320 Score: 287
Period size: 51 Copynumber: 3.6 Consensus size: 51
26019127 CCGTATAGAA
* * * * *
26019137 ATTCATATACTCACGATGACACTGAGTCATCAGACCTTTAATTCGTCATGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
*
26019188 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCTTAAAGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
* **
26019239 ATTCATTTACTCACGATGACACTTAGTCATCGGACCTTTAACCCATAAAGG
1 ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
26019290 ATTCATTTACTCACGATGACACTTAGTCATC
1 ATTCATTTACTCACGATGACACTTAGTCATC
26019321 GGAGCTTTTC
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 124 1.00
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
ATTCATTTACTCACGATGACACTTAGTCATCAGACCTTTAATTCATAAAGG
Found at i:26023053 original size:34 final size:34
Alignment explanation
Indices: 26023015--26023080 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
26023005 CTGTAGTATA
*
26023015 ATTGTCCCTGCAT-TATTAATGTCATTGCATTTTT
1 ATTGTCCCTGCATCTA-CAATGTCATTGCATTTTT
* *
26023049 ATTGTCGCTGCATCTACATTGTCATTGCATTT
1 ATTGTCCCTGCATCTACAATGTCATTGCATTT
26023081 CCATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (34 bp):
ATTGTCCCTGCATCTACAATGTCATTGCATTTTT
Found at i:26023054 original size:17 final size:17
Alignment explanation
Indices: 26023023--26023080 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
26023013 TAATTGTCCC
* *
26023023 TGCATTATTAATGTCAT
1 TGCATTTTTATTGTCAT
**
26023040 TGCATTTTTATTGTCGC
1 TGCATTTTTATTGTCAT
* **
26023057 TGCATCTACATTGTCAT
1 TGCATTTTTATTGTCAT
26023074 TGCATTT
1 TGCATTT
26023081 CCATATATAT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (17 bp):
TGCATTTTTATTGTCAT
Found at i:26026563 original size:33 final size:32
Alignment explanation
Indices: 26026438--26026855 Score: 308
Period size: 33 Copynumber: 12.8 Consensus size: 32
26026428 GTAGCAAACG
* * * *
26026438 CACCCTCCCCATCAGCTTGTACCCCTCCTACAT
1 CACCCTCCCCATCAACTTCTA-CCCTTCAACAT
* * * *
26026471 TACCCTCCTCA-CAAGCTTCTACCCCTCAACAG
1 CACCCTCCCCATCAA-CTTCTACCCTTCAACAT
* * * *
26026503 CACCCTCCCCAACAACGTGTACCCCTTCAACAA
1 CACCCTCCCCATCAACTTCTA-CCCTTCAACAT
* * * *
26026536 AATCTTCACCATCAACTTCTACACCTTCAACAT
1 CACCCTCCCCATCAACTTCTAC-CCTTCAACAT
* *
26026569 CACCCTCCCCAAT-AGCTTCTACCCCTTCAACAA
1 CACCCTCCCC-ATCAACTTCTA-CCCTTCAACAT
* * **
26026602 CATCTTTACCATCAACTTCTACCCTTTCAACAT
1 CACCCTCCCCATCAACTTCTACCC-TTCAACAT
*
26026635 CACCCTCCCCAAT-AACTTCTACCCCTTCAACAA
1 CACCCTCCCC-ATCAACTTCTA-CCCTTCAACAT
* * *
26026668 CACCTTCACCATAAACTTCTACCCTTTCAACAT
1 CACCCTCCCCATCAACTTCTACCC-TTCAACAT
* *
26026701 CACCCTCCCCAACAGCTTCTACCCCTTCAACAT
1 CACCCTCCCCATCAACTTCTA-CCCTTCAACAT
*
26026734 CACCCTCCCCAT-AAGCTTCTACCCTTTAATC-T
1 CACCCTCCCCATCAA-CTTCTACCCTTCAA-CAT
* * * *
26026766 CATCCTCCCCAACAGCTTCTACCCCTTCAACAA
1 CACCCTCCCCATCAACTTCTA-CCCTTCAACAT
* * *
26026799 CAGCTTCACCATCAACTTCTACCCGTTCAACAT
1 CACCCTCCCCATCAACTTCTACCC-TTCAACAT
* * *
26026832 CACTCTCCCCAACAACATC-ACCCT
1 CACCCTCCCCATCAACTTCTACCCT
26026856 CTTTATCAGC
Statistics
Matches: 299, Mismatches: 67, Indels: 40
0.74 0.17 0.10
Matches are distributed among these distances:
31 1 0.00
32 66 0.22
33 221 0.74
34 11 0.04
ACGTcount: A:0.27, C:0.45, G:0.03, T:0.25
Consensus pattern (32 bp):
CACCCTCCCCATCAACTTCTACCCTTCAACAT
Found at i:26026578 original size:66 final size:66
Alignment explanation
Indices: 26026486--26026847 Score: 473
Period size: 66 Copynumber: 5.5 Consensus size: 66
26026476 TCCTCACAAG
* * * * * *
26026486 CTTCTACCC-CTCAACAGCACCCTCCCCAACAACGTGTACCCCTTCAACAAAATCTTCACCATCA
1 CTTCTACCCTTTCAACATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCA
26026550 A
66 A
* * * *
26026551 CTTCTACACC-TTCAACATCACCCTCCCCAATAGCTTCTACCCCTTCAACAACATCTTTACCATC
1 CTTCTAC-CCTTTCAACATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATC
26026615 AA
65 AA
* *
26026617 CTTCTACCCTTTCAACATCACCCTCCCCAATAACTTCTACCCCTTCAACAACACCTTCACCATAA
1 CTTCTACCCTTTCAACATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCA
26026682 A
66 A
* * * *
26026683 CTTCTACCCTTTCAACATCACCCTCCCCAACAGCTTCTACCCCTTCAACATCACCCTCCCCAT-A
1 CTTCTACCCTTTCAACATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCA
26026747 A
66 A
* * *
26026748 GCTTCTACCCTTT-AATC-TCATCCTCCCCAACAGCTTCTACCCCTTCAACAACAGCTTCACCAT
1 -CTTCTACCCTTTCAA-CATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCAT
26026811 CAA
64 CAA
* *
26026814 CTTCTACCCGTTCAACATCACTCTCCCCAACAAC
1 CTTCTACCCTTTCAACATCACCCTCCCCAACAAC
26026848 ATCACCCTCT
Statistics
Matches: 264, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
65 66 0.25
66 198 0.75
ACGTcount: A:0.28, C:0.45, G:0.02, T:0.25
Consensus pattern (66 bp):
CTTCTACCCTTTCAACATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCA
A
Found at i:26026654 original size:99 final size:98
Alignment explanation
Indices: 26026467--26026843 Score: 361
Period size: 99 Copynumber: 3.8 Consensus size: 98
26026457 TACCCCTCCT
* * * * * * * *
26026467 ACATTACCCTCCTCACA-AGCTTCTACCCC-TCAACAGCACCCTCCCCAACAACGTGTACCCCTT
1 ACATCACCCTCCCCA-ATAGCTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCCTT
** * * *
26026530 CAACAAAATCTTCACC-ATCAACTTCTACACCTTCA
65 CAACATCACCCTCCCCAAT-AACTTCTAC-CCTTCA
* * *
26026565 ACATCACCCTCCCCAATAGCTTCTACCCCTTCAACAACATCTTTACCATCAACTTCTACCCTTTC
1 ACATCACCCTCCCCAATAGCTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCCTTC
26026630 AACATCACCCTCCCCAATAACTTCTACCCCTTCA
66 AACATCACCCTCCCCAATAACTTCTA-CCCTTCA
* * * * * * * * * *
26026664 ACAACACCTTCACC-ATAAACTTCTACCCTTTCAACATCACCCTCCCCAACAGCTTCTACCCCTT
1 ACATCACCCTCCCCAAT-AGCTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCCTT
*
26026728 CAACATCACCCTCCCC-ATAAGCTTCTACCCTTTA
65 CAACATCACCCTCCCCAATAA-CTTCTACCCTTCA
* * * *
26026762 ATC-TCATCCTCCCCAACAGCTTCTACCCCTTCAACAACAGCTTCACCATCAACTTCTACCCGTT
1 A-CATCACCCTCCCCAATAGCTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCCTT
*
26026826 CAACATCACTCTCCCCAA
65 CAACATCACCCTCCCCAA
26026844 CAACATCACC
Statistics
Matches: 225, Mismatches: 45, Indels: 17
0.78 0.16 0.06
Matches are distributed among these distances:
97 1 0.00
98 98 0.44
99 123 0.55
100 3 0.01
ACGTcount: A:0.28, C:0.45, G:0.03, T:0.25
Consensus pattern (98 bp):
ACATCACCCTCCCCAATAGCTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCCTTC
AACATCACCCTCCCCAATAACTTCTACCCTTCA
Found at i:26026675 original size:132 final size:132
Alignment explanation
Indices: 26026438--26026845 Score: 504
Period size: 131 Copynumber: 3.1 Consensus size: 132
26026428 GTAGCAAACG
* * * * ** * *
26026438 CACCCTCCCCATCAGCTTGTACCCCTCCTACATTACCCTC-CTCACAAGCTTCTACCC-CTCAAC
1 CACCCTCCCCAACAGCTTCTACCCCTTCAACAACACCCTCAC-CATAAGCTTCTACCCTTTCAAC
* * * * *
26026501 AGCACCCTCCCCAACAACGTGTACCCCTTCAACAAAATCTTCACCATCAACTTCTACACC-TTCA
65 ATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTAC-CCGTTCA
26026565 ACAT
129 ACAT
* * * *
26026569 CACCCTCCCCAATAGCTTCTACCCCTTCAACAACATCTTTACCATCAA-CTTCTACCCTTTCAAC
1 CACCCTCCCCAACAGCTTCTACCCCTTCAACAACACCCTCACCAT-AAGCTTCTACCCTTTCAAC
* * *
26026633 ATCACCCTCCCCAATAACTTCTACCCCTTCAACAACACCTTCACCATAAACTTCTACCCTTTCAA
65 ATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCGTTCAA
26026698 CAT
130 CAT
* *
26026701 CACCCTCCCCAACAGCTTCTACCCCTTCAACATCACCCTCCCCATAAGCTTCTACCCTTT-AATC
1 CACCCTCCCCAACAGCTTCTACCCCTTCAACAACACCCTCACCATAAGCTTCTACCCTTTCAA-C
* * *
26026765 -TCATCCTCCCCAACAGCTTCTACCCCTTCAACAACAGCTTCACCATCAACTTCTACCCGTTCAA
65 ATCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCGTTCAA
26026829 CAT
130 CAT
*
26026832 CACTCTCCCCAACA
1 CACCCTCCCCAACA
26026846 ACATCACCCT
Statistics
Matches: 239, Mismatches: 32, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
131 121 0.51
132 118 0.49
ACGTcount: A:0.27, C:0.45, G:0.03, T:0.25
Consensus pattern (132 bp):
CACCCTCCCCAACAGCTTCTACCCCTTCAACAACACCCTCACCATAAGCTTCTACCCTTTCAACA
TCACCCTCCCCAACAACTTCTACCCCTTCAACAACACCTTCACCATCAACTTCTACCCGTTCAAC
AT
Found at i:26030174 original size:20 final size:20
Alignment explanation
Indices: 26030149--26030219 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
26030139 ACAACTTTAA
*
26030149 AATCAAATTAAAATGATTTT
1 AATCAAATCAAAATGATTTT
*
26030169 AATCAAGTCAAAATGATTTT
1 AATCAAATCAAAATGATTTT
* *
26030189 AA-CTAAGTCAAAATCATTTT
1 AATC-AAATCAAAATGATTTT
26030209 AA-CAAATCAAA
1 AATCAAATCAAA
26030220 TTGCTTTTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
19 8 0.17
20 38 0.83
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (20 bp):
AATCAAATCAAAATGATTTT
Found at i:26031862 original size:176 final size:176
Alignment explanation
Indices: 26031568--26031920 Score: 679
Period size: 176 Copynumber: 2.0 Consensus size: 176
26031558 TTGTAACAAA
26031568 TCTTTTTTATTTGAGATCGGGTATCTAATCCATTTTAAAGCTTGATTGAGAGATTTGTAATTAAT
1 TCTTTTTTATTTGAGATCGGGTATCTAATCCATTTTAAAGCTTGATTGAGAGATTTGTAATTAAT
*
26031633 GACTAATCTTGACATTCCTCTATCAAGTTCTGCATTTTTCATCACATAAAATGTTGAACAAATCC
66 GACTAATCTTGACATTCCTCTATAAAGTTCTGCATTTTTCATCACATAAAATGTTGAACAAATCC
26031698 AAGGAGATATGCTTTTTCTAGTTAATTTTTTATTGAGAATATCTTG
131 AAGGAGATATGCTTTTTCTAGTTAATTTTTTATTGAGAATATCTTG
* *
26031744 TCTTTTTTATTTGAGATCGGGTATCTGATCTATTTTAAAGCTTGATTGAGAGATTTGTAATTAAT
1 TCTTTTTTATTTGAGATCGGGTATCTAATCCATTTTAAAGCTTGATTGAGAGATTTGTAATTAAT
26031809 GACTAATCTTGACATTCCTCTATAAAGTTCTGCATTTTTCATCACATAAAATGTTGAACAAATCC
66 GACTAATCTTGACATTCCTCTATAAAGTTCTGCATTTTTCATCACATAAAATGTTGAACAAATCC
26031874 AAGGAGATATGCTTTTTCTAGTTAATTTTTTATTGAGAATATCTTG
131 AAGGAGATATGCTTTTTCTAGTTAATTTTTTATTGAGAATATCTTG
26031920 T
1 T
26031921 ATCTCTTTTT
Statistics
Matches: 174, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
176 174 1.00
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.43
Consensus pattern (176 bp):
TCTTTTTTATTTGAGATCGGGTATCTAATCCATTTTAAAGCTTGATTGAGAGATTTGTAATTAAT
GACTAATCTTGACATTCCTCTATAAAGTTCTGCATTTTTCATCACATAAAATGTTGAACAAATCC
AAGGAGATATGCTTTTTCTAGTTAATTTTTTATTGAGAATATCTTG
Found at i:26034493 original size:26 final size:26
Alignment explanation
Indices: 26034463--26034561 Score: 81
Period size: 26 Copynumber: 3.6 Consensus size: 26
26034453 GTTATTAAAT
26034463 TTTAATAAGATTATTATTAAATATAA
1 TTTAATAAGATTATTATTAAATATAA
* * * *
26034489 TTTAATAAAAAAATAAATAATTAAATCATAT
1 TTTAAT---AAGAT-TATTATTAAAT-ATAA
* * *
26034520 TTTAACATGATTATTATTAAATACAA
1 TTTAATAAGATTATTATTAAATATAA
*
26034546 TTTAATAACATTATTA
1 TTTAATAAGATTATTA
26034562 ATATAATTAT
Statistics
Matches: 54, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
26 21 0.39
27 9 0.17
28 3 0.06
29 4 0.07
30 9 0.17
31 8 0.15
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (26 bp):
TTTAATAAGATTATTATTAAATATAA
Found at i:26034603 original size:39 final size:38
Alignment explanation
Indices: 26034529--26034605 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 38
26034519 TTTTAACATG
* *
26034529 ATTATTATTAAATACAATTTAATAACATTATTAATATA
1 ATTATTATTAAATACAATTTAATAAAATCATTAATATA
**
26034567 ATTATTATTAAAATATGATTTAATAAAAATCA-TAATATA
1 ATTATTATT-AAATACAATTTAAT-AAAATCATTAATATA
26034606 CAATATTAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 9 0.27
39 19 0.58
40 5 0.15
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (38 bp):
ATTATTATTAAATACAATTTAATAAAATCATTAATATA
Found at i:26045652 original size:23 final size:23
Alignment explanation
Indices: 26045622--26045668 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26045612 CTGCAGTGGG
26045622 TCAATTAGTTCAAGATTCAAACA
1 TCAATTAGTTCAAGATTCAAACA
26045645 TCAATTAGTTCAAGATTCAAACA
1 TCAATTAGTTCAAGATTCAAACA
26045668 T
1 T
26045669 AAACACTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.32
Consensus pattern (23 bp):
TCAATTAGTTCAAGATTCAAACA
Found at i:26046039 original size:17 final size:18
Alignment explanation
Indices: 26046002--26046041 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26045992 TAACAAAATG
26046002 ATGCAATGATAAAATAAA
1 ATGCAATGATAAAATAAA
* *
26046020 ATGCAGTGATAATA-AAA
1 ATGCAATGATAAAATAAA
26046037 ATGCA
1 ATGCA
26046042 TTAAAACTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.55, C:0.07, G:0.15, T:0.23
Consensus pattern (18 bp):
ATGCAATGATAAAATAAA
Found at i:26046595 original size:145 final size:145
Alignment explanation
Indices: 26046332--26046610 Score: 549
Period size: 145 Copynumber: 1.9 Consensus size: 145
26046322 TATTTCACTT
26046332 GTTACAATTTCAGCCTGACTCGCAGTAGGTCGAGTCACTTCTAGGCTGGATGCTCCCACATCGTC
1 GTTACAATTTCAGCCTGACTCGCAGTAGGTCGAGTCACTTCTAGGCTGGATGCTCCCACATCGTC
26046397 CTCCACGATCAGTGTTGGAGCATTATCAGATTCCTTCTTTTCCTGCACCTCTGCAAGCTCTGTTT
66 CTCCACGATCAGTGTTGGAGCATTATCAGATTCCTTCTTTTCCTGCACCTCTGCAAGCTCTGTTT
26046462 CTTCTAGGCTGACTC
131 CTTCTAGGCTGACTC
*
26046477 GTTACAATTTTAGCCTGACTCGCAGTAGGTCGAGTCACTTCTAGGCTGGATGCTCCCACATCGTC
1 GTTACAATTTCAGCCTGACTCGCAGTAGGTCGAGTCACTTCTAGGCTGGATGCTCCCACATCGTC
26046542 CTCCACGATCAGTGTTGGAGCATTATCAGATTCCTTCTTTTCCTGCACCTCTGCAAGCTCTGTTT
66 CTCCACGATCAGTGTTGGAGCATTATCAGATTCCTTCTTTTCCTGCACCTCTGCAAGCTCTGTTT
26046607 CTTC
131 CTTC
26046611 CTTCTCGTTT
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 133 1.00
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (145 bp):
GTTACAATTTCAGCCTGACTCGCAGTAGGTCGAGTCACTTCTAGGCTGGATGCTCCCACATCGTC
CTCCACGATCAGTGTTGGAGCATTATCAGATTCCTTCTTTTCCTGCACCTCTGCAAGCTCTGTTT
CTTCTAGGCTGACTC
Found at i:26055259 original size:37 final size:37
Alignment explanation
Indices: 26055208--26055306 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 37
26055198 GCAATTTTAA
26055208 TCTAGAATTGCGCCCAAACATGTCGCTACATGAGCACT
1 TCTAG-ATTGCGCCCAAACATGTCGCTACATGAGCACT
* *
26055246 TCTAGATTGCGCCCAAA-ACTGTCTCTGCATGAGCACT
1 TCTAGATTGCGCCCAAACA-TGTCGCTACATGAGCACT
* * *
26055283 TCCAGATTGCACCAAAAC-TGTCGC
1 TCTAGATTGCGCCCAAACATGTCGC
26055307 CGCAGGAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
36 6 0.11
37 42 0.79
38 5 0.09
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
TCTAGATTGCGCCCAAACATGTCGCTACATGAGCACT
Found at i:26055445 original size:26 final size:26
Alignment explanation
Indices: 26055413--26055462 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26055403 CACCCAGGAA
26055413 TGTCGCTACATGAACATGTACAGAAT
1 TGTCGCTACATGAACATGTACAGAAT
* *
26055439 TGTCGCTGCATGAACATGTCCAGA
1 TGTCGCTACATGAACATGTACAGA
26055463 GTTGCGCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
TGTCGCTACATGAACATGTACAGAAT
Found at i:26059819 original size:76 final size:76
Alignment explanation
Indices: 26059693--26059844 Score: 295
Period size: 76 Copynumber: 2.0 Consensus size: 76
26059683 ACTACAGGGA
*
26059693 TCTATCTTAAAAGATCAAAGCAGGAAAGTGTTCAAGGCTATCACCGCAATTTTAATCCAGAATTA
1 TCTATCTTAAAAGATCAAAGCAAGAAAGTGTTCAAGGCTATCACCGCAATTTTAATCCAGAATTA
26059758 CCCCCAAACAT
66 CCCCCAAACAT
26059769 TCTATCTTAAAAGATCAAAGCAAGAAAGTGTTCAAGGCTATCACCGCAATTTTAATCCAGAATTA
1 TCTATCTTAAAAGATCAAAGCAAGAAAGTGTTCAAGGCTATCACCGCAATTTTAATCCAGAATTA
26059834 CCCCCAAACAT
66 CCCCCAAACAT
26059845 GTCGCTGCAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (76 bp):
TCTATCTTAAAAGATCAAAGCAAGAAAGTGTTCAAGGCTATCACCGCAATTTTAATCCAGAATTA
CCCCCAAACAT
Found at i:26060038 original size:37 final size:37
Alignment explanation
Indices: 26059942--26060038 Score: 106
Period size: 38 Copynumber: 2.6 Consensus size: 37
26059932 ATTTCTGGAA
*
26059942 TGCACCCAAGACTATCGCTGCATAAATATTCTTCAAAT
1 TGCACCC-AGAATATCGCTGCATAAATATTCTTCAAAT
* * * *
26059980 TGCATCTAGAACTATCACTGCATAAGTATTCTTC-AAT
1 TGCACCCAGAA-TATCGCTGCATAAATATTCTTCAAAT
*
26060017 TGCACCCAGGAATGTCGCTGCA
1 TGCACCCA-GAATATCGCTGCA
26060039 CGAACATGTA
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
37 20 0.42
38 28 0.58
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (37 bp):
TGCACCCAGAATATCGCTGCATAAATATTCTTCAAAT
Found at i:26060063 original size:26 final size:26
Alignment explanation
Indices: 26060029--26060082 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
26060019 CACCCAGGAA
*
26060029 TGTCGCTGCACGAACATGTACAGAAT
1 TGTCACTGCACGAACATGTACAGAAT
* *
26060055 TGTCACTGCATGAACATGTCCAGAAT
1 TGTCACTGCACGAACATGTACAGAAT
26060081 TG
1 TG
26060083 CGCCCAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
TGTCACTGCACGAACATGTACAGAAT
Found at i:26060866 original size:16 final size:16
Alignment explanation
Indices: 26060845--26060875 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26060835 TTGTGGATCC
26060845 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
26060861 CATTTTATCTTTATT
1 CATTTTACCTTTATT
26060876 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:26062083 original size:16 final size:16
Alignment explanation
Indices: 26062036--26062085 Score: 59
Period size: 15 Copynumber: 3.1 Consensus size: 16
26062026 AAGGATATAC
26062036 ATATTGAATTATTTTT-
1 ATATT-AATTATTTTTA
*
26062052 ATATTATTTATTTTTA
1 ATATTAATTATTTTTA
26062068 ATA-TAATTATTCTTTA
1 ATATTAATTATT-TTTA
26062084 AT
1 AT
26062086 CCATAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 16 0.53
16 14 0.47
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
ATATTAATTATTTTTA
Found at i:26079554 original size:46 final size:46
Alignment explanation
Indices: 26079483--26079584 Score: 132
Period size: 46 Copynumber: 2.2 Consensus size: 46
26079473 TATTACAAAT
* * * ** *
26079483 TAGTAGTACACCACATGATAGCTACAATATTTTCCATGTGCATAAC
1 TAGTATTACACCACATGATAACTACAACATCATCCAAGTGCATAAC
*
26079529 TAGTATTACACCACATGATAACTACAACATCATCTAAGTGCATAAC
1 TAGTATTACACCACATGATAACTACAACATCATCCAAGTGCATAAC
*
26079575 TAATATTACA
1 TAGTATTACA
26079585 AATTAGTAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (46 bp):
TAGTATTACACCACATGATAACTACAACATCATCCAAGTGCATAAC
Found at i:26079683 original size:109 final size:105
Alignment explanation
Indices: 26079470--26079693 Score: 288
Period size: 109 Copynumber: 2.1 Consensus size: 105
26079460 AAACCACAAT
* * * *
26079470 TAATATTACAAATTAGTAGTACACCACATGATAGCTACAATATTTTCCATGTGCATAACTAGTAT
1 TAATATTACAAATTAGTAGTACACCACATGATAACTACAATATTTTCCAAGTACATAACTAGTAG
* *
26079535 TACACCACATGATAACTACAACATCATCTAAGTGCATAAC
66 TACACCACATGATAACTAAAACATCATCCAAGTGCATAAC
*
26079575 TAATATTACAAATTAGTAGTACACCACATGATAACTACAAATAATATTTTCCAAGTACATAATTA
1 TAATATTACAAATTAGTAGTACACCACATGATAACTAC----AATATTTTCCAAGTACATAACTA
* * **
26079640 GTAGTACATCACACT-ATAACTAAAATATTGTCCAAGTGCATAAC
62 GTAGTACACCACA-TGATAACTAAAACATCATCCAAGTGCATAAC
*
26079684 TAGTATTACA
1 TAATATTACA
26079694 CCATATAATT
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
105 37 0.36
109 64 0.63
110 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (105 bp):
TAATATTACAAATTAGTAGTACACCACATGATAACTACAATATTTTCCAAGTACATAACTAGTAG
TACACCACATGATAACTAAAACATCATCCAAGTGCATAAC
Found at i:26087071 original size:45 final size:46
Alignment explanation
Indices: 26087012--26087603 Score: 624
Period size: 45 Copynumber: 12.9 Consensus size: 46
26087002 GAAGCTGTAA
* *
26087012 CATCCAATCTTTTACCCCT-AATCTAGAGAGGTAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * * * *
26087057 CATCTAATATTTTACTCCCTAAATCTAAAGAGGCAAATTGAAGCCAC
1 CATCCAATCTTTTAC-CCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* **
26087104 CATCCAATCTTTTACCCCTAAATAC-AGAAGGATAGATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAAAT-CTAGAGGGGCAGATTGAAGCCAC
* * * *
26087150 CATCCAATCTTTTACCCCT-AATCCAAAGGGGCAAATTAAAGCCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * * * *
26087195 CATTCAATCTTTTACCCCTAAATCTAAAGGGGTAGATTAAAACCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * * *
26087241 CATCCAACCTTTTACCCCTAAATCCA-AAGGGCAGATTAAAGCCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* *
26087286 CATCCAATCTTTTACCCCT-AATCTAGAGGGGTAAATTGAAGCCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * *
26087331 CATCCAATCTTTTACCTCT-AATCCAGAGGGGCAGATTAAAGCCAC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * * * * *
26087376 CATCCAATCTTTTA-CCCTTAATCCAAATGGGCAGATTGAATCCAT
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* * * * * * * *
26087421 CATCCAATCTTTTTCCCCT-AATCCAAAGGAGTAGATTAAAGTCAT
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* *
26087466 CATCCAATCTTTTACCCCTAAATCTAGAGAGGCAGATTGAAGCTACC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCA-C
* * *
26087513 ACATCCAATCTTATACCCCTAAATCTAGAGGGACAGATTGAAGCTAC
1 -CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
* *
26087560 TACATCCAATCTTATACCCCTTAAATCTAGAGGGGTAGATTGAA
1 --CATCCAATCTTTTACCCC-TAAATCTAGAGGGGCAGATTGAA
26087604 ACTACAGAAA
Statistics
Matches: 465, Mismatches: 69, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
44 9 0.02
45 224 0.48
46 112 0.24
47 38 0.08
48 61 0.13
49 21 0.05
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (46 bp):
CATCCAATCTTTTACCCCTAAATCTAGAGGGGCAGATTGAAGCCAC
Found at i:26087363 original size:90 final size:92
Alignment explanation
Indices: 26087012--26087603 Score: 705
Period size: 90 Copynumber: 6.4 Consensus size: 92
26087002 GAAGCTGTAA
* * *
26087012 CATCCAATCTTTTACCCCT-AATCTAGAGAGGTAGATTGAAGCCACCATCTAATATTTTACTCCC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTAC-CCC
* * * *
26087076 TAAATCTAAAGAGGCAAATTGAAGCCAC
65 TAAATCCAAAGGGGCAGATTAAAGCCAC
* *
26087104 CATCCAATCTTTTACCCCTAAATAC-AGAAGGATAGATTGAAGCCACCATCCAATCTTTTACCCC
1 CATCCAATCTTTTACCCCTAAAT-CTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTACCCC
*
26087168 T-AATCCAAAGGGGCAAATTAAAGCCAC
65 TAAATCCAAAGGGGCAGATTAAAGCCAC
* * * * *
26087195 CATTCAATCTTTTACCCCTAAATCTAAAGGGGTAGATTAAAACCACCATCCAACCTTTTACCCCT
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTACCCCT
26087260 AAATCCAAA-GGGCAGATTAAAGCCAC
66 AAATCCAAAGGGGCAGATTAAAGCCAC
* *
26087286 CATCCAATCTTTTACCCCT-AATCTAGAGGGGTAAATTGAAGCCACCATCCAATCTTTTACCTCT
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTACCCCT
*
26087350 -AATCCAGAGGGGCAGATTAAAGCCAC
66 AAATCCAAAGGGGCAGATTAAAGCCAC
* * * * * * * *
26087376 CATCCAATCTTTTA-CCCTTAATCCAAATGGGCAGATTGAATCCATCATCCAATCTTTTTCCCCT
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTACCCCT
* * * *
26087440 -AATCCAAAGGAGTAGATTAAAGTCAT
66 AAATCCAAAGGGGCAGATTAAAGCCAC
* * * *
26087466 CATCCAATCTTTTACCCCTAAATCTAGAGAGGCAGATTGAAGCTACCACATCCAATCTTATACCC
1 CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCA-C-CATCCAATCTTTTACCC
* * * * *
26087531 CTAAATCTAGAGGGACAGATTGAAGCTAC
64 CTAAATCCAAAGGGGCAGATTAAAGCCAC
*
26087560 TACATCCAATCTTATACCCCTTAAATCTAGAGGGGTAGATTGAA
1 --CATCCAATCTTTTACCCC-TAAATCTAGAGGGGTAGATTGAA
26087604 ACTACAGAAA
Statistics
Matches: 427, Mismatches: 60, Indels: 21
0.84 0.12 0.04
Matches are distributed among these distances:
89 11 0.03
90 142 0.33
91 136 0.32
92 31 0.07
93 51 0.12
94 18 0.04
96 17 0.04
97 21 0.05
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (92 bp):
CATCCAATCTTTTACCCCTAAATCTAGAGGGGTAGATTGAAGCCACCATCCAATCTTTTACCCCT
AAATCCAAAGGGGCAGATTAAAGCCAC
Found at i:26090678 original size:15 final size:15
Alignment explanation
Indices: 26090643--26090684 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
26090633 TCTGAATCTG
*
26090643 ATATTGTTTTTGTAT
1 ATATTTTTTTTGTAT
26090658 -TGATTTTTTTTGTAT
1 AT-ATTTTTTTTGTAT
26090673 ATATTTTCTTTT
1 ATATTTT-TTTT
26090685 AAAAACCGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 17 0.74
16 5 0.22
ACGTcount: A:0.17, C:0.02, G:0.10, T:0.71
Consensus pattern (15 bp):
ATATTTTTTTTGTAT
Found at i:26091001 original size:22 final size:22
Alignment explanation
Indices: 26090967--26091019 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
26090957 CACGTGGCTA
* *
26090967 ATGTGGTGATGACATGGTGATG
1 ATGTGGCGTTGACATGGTGATG
* *
26090989 ATGTGGCGTTGACGTGGTGCTG
1 ATGTGGCGTTGACATGGTGATG
26091011 ATGTGGCGT
1 ATGTGGCGT
26091020 ATGCTGATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.15, C:0.09, G:0.43, T:0.32
Consensus pattern (22 bp):
ATGTGGCGTTGACATGGTGATG
Found at i:26091847 original size:93 final size:93
Alignment explanation
Indices: 26091629--26092163 Score: 626
Period size: 93 Copynumber: 5.7 Consensus size: 93
26091619 GTCGTCGCGA
* * *
26091629 CTTAAATCA-TTCTCTTTATGCTTCTGAGGTACAAGGTCCGCCGTTGTGACTTAAACCTTTCCCT
1 CTTAAAT-ATTTCCCTTCATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCC-
* * * * *
26091693 TTGTATCTTCATAGTACTGGATTCATCGTTACGG
64 ---T-TCTTCGTGGTATTGGATTCACCGTTGCGG
* * ** *
26091727 CTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGGTCCTTCATTGCGACTTAAACCTTTCCCTT
1 CTTAAATATTTCCCTTCATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCCTT
*
26091792 CTTCGTGGTATTAGATTCACCGTTGCGG
66 CTTCGTGGTATTGGATTCACCGTTGCGG
* * * *
26091820 TTTAAATATTTCCCTTCGTGCTTTTGAGGTACAAGG-CTCGCTGTTGCGACTTAAACCTTTCCCT
1 CTTAAATATTTCCCTTCATGCTTCTGAGGTACAAGGTC-CGCCGTTGCGACTTAAACCTTTCCCT
*
26091884 TCTTCGTGGTACTGGATT-AGCCGTTGCGG
65 TCTTCGTGGTATTGGATTCA-CCGTTGCGG
* * * *
26091913 CTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGGTTCACCGTTACGACTTAAACCTTTCCCTT
1 CTTAAATATTTCCCTTCATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCCTT
* * * *
26091978 CTTCGTGCTATTTGATTCGCCATTGCGG
66 CTTCGTGGTATTGGATTCACCGTTGCGG
* *
26092006 CTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTT
1 CTTAAATATTTCCCTTCATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCCTT
* **
26092071 CTTCGTGGTATTGGATTCGCCGTTGTAG
66 CTTCGTGGTATTGGATTCACCGTTGCGG
* * * * * *
26092099 CTTAAATTTTTCCCTTCAATGCCTCTAAGGTACAAGGTTCTCCGTAGCGACTTAAACCTTTCCCT
1 CTTAAATATTTCCCTTC-ATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCCT
26092164 CAATATCTTC
Statistics
Matches: 380, Mismatches: 51, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
92 2 0.01
93 281 0.74
94 43 0.11
98 54 0.14
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (93 bp):
CTTAAATATTTCCCTTCATGCTTCTGAGGTACAAGGTCCGCCGTTGCGACTTAAACCTTTCCCTT
CTTCGTGGTATTGGATTCACCGTTGCGG
Found at i:26091874 original size:49 final size:49
Alignment explanation
Indices: 26091616--26092163 Score: 232
Period size: 49 Copynumber: 11.6 Consensus size: 49
26091606 TAGTACTAGA
* * * * * * *
26091616 TTCGTCGTCGCGACTTAAATCATTCTCTTTATGCTTCTGAGGTACAAGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * * * *
26091665 TCCGCCGTTGTGACTTAAACCTTTCCCTT--TG-TATCTTCATAGTAC-TGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCT-T-TTGA-GGTACAAGG
** * * *
26091713 ATTCATCGTTACGGCTTAAATCTTTCCCTTCATGCTTTTGAGGTACAAGG
1 -TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* ** * * * ** *
26091763 TCCTTCATTGCGACTTAAACCTTTCCC-T--T-C-TTCGTGGTATTAGA
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* ** ** *
26091807 TTCACCGTTGCGGTTTAAATATTTCCCTTCGTGCTTTTGAGGTACAAGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * * * *
26091856 CTCGCTGTTGCGACTTAAACCTTTCCC-T--T-C-TTCGTGGTAC-TGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * ** *
26091899 ATTAGCCGTTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGG
1 -TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * * * * *** *
26091949 TTCACCGTTACGACTTAAACCTTTCCC-T--T-C-TTCGTGCTATTTGA
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * **
26091993 TTCGCCATTGCGGCTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* * **
26092042 TTCGCCGTTGCGACTTAAACCTTTCCC-T--T-C-TTCGTGGTA-TTGG
1 TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
* ** * * *
26092085 ATTCGCCGTTG-TAGCTTAAATTTTTCCCTTCAATGCCTCTAAGGTACAAGG
1 -TTCGCCGTTGCGA-CTTAAACCTTTCCCTTC-ATGCTTTTGAGGTACAAGG
* *
26092136 TTCTCCGTAGCGACTTAAACCTTTCCCT
1 TTCGCCGTTGCGACTTAAACCTTTCCCT
26092164 CAATATCTTC
Statistics
Matches: 350, Mismatches: 114, Indels: 69
0.66 0.21 0.13
Matches are distributed among these distances:
43 5 0.01
44 113 0.32
45 8 0.02
46 5 0.01
47 6 0.02
48 12 0.03
49 161 0.46
50 33 0.09
51 6 0.02
52 1 0.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (49 bp):
TTCGCCGTTGCGACTTAAACCTTTCCCTTCATGCTTTTGAGGTACAAGG
Found at i:26091917 original size:44 final size:44
Alignment explanation
Indices: 26091770--26092095 Score: 190
Period size: 44 Copynumber: 7.1 Consensus size: 44
26091760 AGGTCCTTCA
* * *
26091770 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTATTAGATTCACCG
1 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTCGCCG
** ** * * * * *
26091814 TTGCGGTTTAAATATTTCCCTTCGTGCTTTTGAGGTACAAGG-CTCGCTG
1 TTGCGACTTAAACCTTTCCC-T--T-C-TTCGTGGTAC-TGGATTCGCCG
*
26091863 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTAGCCG
1 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTCGCCG
* ** * * *
26091907 TTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGG-TTCACCG
1 TTGCGACTTAAACCTTTCCC-T--T-CTTC-GTGGTAC-TGGATTCGCCG
* * * * *
26091956 TTACGACTTAAACCTTTCCCTTCTTCGTGCTATTTGATTCGCCA
1 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTCGCCG
* ** * * *
26092000 TTGCGGCTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGG-TTCGCCG
1 TTGCGACTTAAACCTTTCCC-T--T-C-TTCGTGGTAC-TGGATTCGCCG
*
26092049 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTATTGGATTCGCCG
1 TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTCGCCG
26092093 TTG
1 TTG
26092096 TAGCTTAAAT
Statistics
Matches: 203, Mismatches: 58, Indels: 42
0.67 0.19 0.14
Matches are distributed among these distances:
43 5 0.02
44 87 0.43
45 9 0.04
46 3 0.01
47 3 0.01
48 9 0.04
49 83 0.41
50 4 0.02
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (44 bp):
TTGCGACTTAAACCTTTCCCTTCTTCGTGGTACTGGATTCGCCG
Found at i:26091943 original size:186 final size:185
Alignment explanation
Indices: 26091629--26092163 Score: 696
Period size: 186 Copynumber: 2.8 Consensus size: 185
26091619 GTCGTCGCGA
* * * *
26091629 CTTAAATCA-TTCTCTTTATGCTTCTGAGGTACAAGGTCCGCCGTTGTGACTTAAACCTTTCCCT
1 CTTAAAT-ATTTCCCTTCATGCTTTTGAGGTACAAGGT-CGCCGTTGCGACTTAAACCTTTCCC-
* * * * * *
26091693 TTGTATCTTCATAGTACTGGATTCA-TCGTTACGGCTTAAATCTTTCCCTTCATGCTTTTGAGGT
63 ---T-TCTTCGTGGTACTGGATT-AGCCGTTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGT
* * * * *
26091757 ACAAGGTCCTTCATTGCGACTTAAACCTTTCCCTTCTTCGTGGTATTAGATTCACCGTTGCGG
123 ACAAGGTTCTCCGTTGCGACTTAAACCTTTCCCTTCTTCGTGCTATTAGATTCACCATTGCGG
* * *
26091820 TTTAAATATTTCCCTTCGTGCTTTTGAGGTACAAGGCTCGCTGTTGCGACTTAAACCTTTCCCTT
1 CTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGG-TCGCCGTTGCGACTTAAACCTTTCCCTT
26091885 CTTCGTGGTACTGGATTAGCCGTTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGGT
65 CTTCGTGGTACTGGATTAGCCGTTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGGT
* * * *
26091950 TCACCGTTACGACTTAAACCTTTCCCTTCTTCGTGCTATTTGATTCGCCATTGCGG
130 TCTCCGTTGCGACTTAAACCTTTCCCTTCTTCGTGCTATTAGATTCACCATTGCGG
26092006 CTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGGTTCGCCGTTGCGACTTAAACCTTTCCCTT
1 CTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGG-TCGCCGTTGCGACTTAAACCTTTCCCTT
* * ** * *
26092071 CTTCGTGGTATTGGATTCGCCGTTGTAGCTTAAATTTTTCCCTTCAATGCCTCTAAGGTACAAGG
65 CTTCGTGGTACTGGATTAGCCGTTGCGGCTTAAATTTTTCCCTTC-ATGCTTCTGAGGTACAAGG
*
26092136 TTCTCCGTAGCGACTTAAACCTTTCCCT
129 TTCTCCGTTGCGACTTAAACCTTTCCCT
26092164 CAATATCTTC
Statistics
Matches: 305, Mismatches: 35, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
185 1 0.00
186 207 0.68
187 43 0.14
190 1 0.00
191 52 0.17
192 1 0.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (185 bp):
CTTAAATATTTCCCTTCATGCTTTTGAGGTACAAGGTCGCCGTTGCGACTTAAACCTTTCCCTTC
TTCGTGGTACTGGATTAGCCGTTGCGGCTTAAATTTTTCCCTTCATGCTTCTGAGGTACAAGGTT
CTCCGTTGCGACTTAAACCTTTCCCTTCTTCGTGCTATTAGATTCACCATTGCGG
Found at i:26104868 original size:24 final size:25
Alignment explanation
Indices: 26104836--26104882 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
26104826 TAAGGCTGCT
26104836 CTCTCCTTTTTTA-AAAAACAAACC
1 CTCTCCTTTTTTAGAAAAACAAACC
*
26104860 CTCTCCTTTTTTAGAACAACAAA
1 CTCTCCTTTTTTAGAAAAACAAA
26104883 TCCACACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.36, C:0.28, G:0.02, T:0.34
Consensus pattern (25 bp):
CTCTCCTTTTTTAGAAAAACAAACC
Found at i:26105317 original size:15 final size:15
Alignment explanation
Indices: 26105282--26105323 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
26105272 TCTGAATCTG
*
26105282 ATATTGTTTTTGTAT
1 ATATTTTTTTTGTAT
26105297 -TGATTTTTTTTGTAT
1 AT-ATTTTTTTTGTAT
26105312 ATATTTTCTTTT
1 ATATTTT-TTTT
26105324 AAAAACCGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 17 0.74
16 5 0.22
ACGTcount: A:0.17, C:0.02, G:0.10, T:0.71
Consensus pattern (15 bp):
ATATTTTTTTTGTAT
Found at i:26105633 original size:22 final size:23
Alignment explanation
Indices: 26105608--26105661 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
26105598 GTCTCGTGGC
*
26105608 TGATGTGGCGA-TGACATGGCGA
1 TGATGTGGCGACTAACATGGCGA
* *
26105630 TGATGTGGC-ACTAACATGGTGC
1 TGATGTGGCGACTAACATGGCGA
26105652 TGATGTGGCG
1 TGATGTGGCG
26105662 TATGCTGACG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.20, C:0.15, G:0.39, T:0.26
Consensus pattern (23 bp):
TGATGTGGCGACTAACATGGCGA
Found at i:26109854 original size:23 final size:23
Alignment explanation
Indices: 26109828--26109914 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
26109818 TTAATGTTCA
**
26109828 CGAACATGTTCATTTAAC-TTAAT
1 CGAACATGTTCA-CGAACATTAAT
26109851 CGAACATGTTCACGAACATTAAT
1 CGAACATGTTCACGAACATTAAT
*
26109874 CGAACATGTTCACGAACAATAAAT
1 CGAACATGTTCACGAAC-ATTAAT
*
26109898 -GAACATGTTCATGAACA
1 CGAACATGTTCACGAACA
26109915 CGTTCACGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
22 4 0.07
23 49 0.84
24 5 0.09
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.28
Consensus pattern (23 bp):
CGAACATGTTCACGAACATTAAT
Found at i:26109868 original size:12 final size:12
Alignment explanation
Indices: 26109851--26109924 Score: 55
Period size: 12 Copynumber: 6.3 Consensus size: 12
26109841 TTAACTTAAT
26109851 CGAACATGTTCA
1 CGAACATGTTCA
*
26109863 CGAACA--TTAA
1 CGAACATGTTCA
26109873 TCGAACATGTTCA
1 -CGAACATGTTCA
* **
26109886 CGAACA-ATAAA
1 CGAACATGTTCA
*
26109897 TGAACATGTTCA
1 CGAACATGTTCA
* *
26109909 TGAACACGTTCA
1 CGAACATGTTCA
26109921 CGAA
1 CGAA
26109925 TAATGTTAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
10 3 0.06
11 13 0.28
12 28 0.60
13 3 0.06
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.23
Consensus pattern (12 bp):
CGAACATGTTCA
Found at i:26110029 original size:12 final size:12
Alignment explanation
Indices: 26110012--26110046 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
26110002 ATCATTAATA
**
26110012 AATAAACGAGTT
1 AATAAACGAGCC
26110024 AATAAACGAGCC
1 AATAAACGAGCC
26110036 AATAAACGAGC
1 AATAAACGAGC
26110047 TTGTTCGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.14
Consensus pattern (12 bp):
AATAAACGAGCC
Found at i:26111786 original size:744 final size:745
Alignment explanation
Indices: 26110441--26111936 Score: 2800
Period size: 744 Copynumber: 2.0 Consensus size: 745
26110431 AAGATTAAAA
26110441 ATTTTAAAATTTTTATTAATTTAATTAATGATAATTGGATTTGGATATTAACCAAATTTACAGTT
1 ATTTTAAAATTTTTATTAATTTAATTAATGATAATTGGATTTGGATATTAACCAAATTTACAGTT
*
26110506 GGAAATTTAATAATACCCCAAGAAATTTAGTATTCAAATTTAATAGCATACAAACTAGTTAAAGT
66 GGAAATTTAATAATACCCCAAGAAATTTAGTATTCAAATTTAATAGCATACAAACTAGTTAAAGC
* *
26110571 CTTGAGAATTTGAATAGTCAAACCATTAGGTAAGACTTTAGAAAGCTGGGTAAAAGAGCACAGAT
131 CCTGAGAATTTGAATAGTCAAACCATTAGGTAAGACTTGAGAAAGCTGGGT-AAAGA-CACAGAT
*
26110636 GTTGGGACTGGGTATACAGCTAATTAACTTCAACAAAAAGTAATCATATTTCATTACTTTCCAAT
194 GTTGAGACTGGGTATACAGCTAATTAACTTCAACAAAAAGTAATCATATTTCATTACTTTCCAAT
*
26110701 TCTTTTAAAATAGTGTTAGAGCAGTTTGAATCAAATTTTTATTAAAGAAATAAAATATAAGTGGT
259 TCTTTTAAAATAGTGTTAGAGCAGTTTGAATCAAATTTTTATTAAAGAAATAAAATATAAATGGT
*
26110766 AAAATAAAGAGATTTGCAGGGATGAGGATCGAGAGTCGAAGAATCCCGTGGTACGATACAGACTA
324 AAAATAAAGAGATTTGCAGGGATGAGGATCGAGAGTCGAAGAATCCCGTGGTACGATACAGAATA
*
26110831 TACAAGTGGAATTCGTATAAAAGTATATTTTTACTATTTGATTTTGTTTAAAATAAGGTGTTTCT
389 TACAAGTGGAATTCGTATAAAAGTATATTTTTACTATTTGATTTTGTTTAAAATAAGATGTTTCT
*
26110896 ATTTTACTACATTAGAATAAAATTTTTCAACCTATAAATAGACATAATTATCTTCTCTTATATTC
454 ACTTTACTACATTAGAATAAAATTTTTCAACCTATAAATAGACATAATTATCTTCTCTTATATTC
* * *
26110961 TTTTAATTTTCGACATTAGTGAATTTTTTTTTTCTGCTCGTGATTTTTTCTCGAAAGGATTTCAC
519 TTTTAATTTTCGACATTAGTAAATTTTTTTTTTCTACTCGTGATTTTTTCTCGAAAAGATTTCAC
*
26111026 GTAAAATTCGTGTGTTCTTTCTCTTTTTCGTTTTCTTTGCAATATTTATTTATTGTTGATATTCA
584 GTAAAATTCATGTGTTCTTTCTCTTTTTCGTTTTCTTTGCAATATTTATTTATTGTTGATATTCA
26111091 ATTTTAACAAGTAGTAATATGATTAAAACCAAAACTAGATTGATCTAATTATATATTCCCTGATT
649 ATTTTAACAAGTAGTAATATGATTAAAACCAAAACTAGATTGATCTAATTATATATTCCCTGATT
26111156 AAAACATCAAGCCAAAGGGAATGGCATCCAAT
714 AAAACATCAAGCCAAAGGGAATGGCATCCAAT
26111188 ATTTTAAAATTTTTATTAATTTAATTAATGATAATTGGATTTGGATATTAACCAAATTTACAGTT
1 ATTTTAAAATTTTTATTAATTTAATTAATGATAATTGGATTTGGATATTAACCAAATTTACAGTT
26111253 GGAAATTTAATAATACCCCAAGAAATTTAGTATTCAAATTTAATAGCATACAAACTAGTTAAAGC
66 GGAAATTTAATAATACCCCAAGAAATTTAGTATTCAAATTTAATAGCATACAAACTAGTTAAAGC
26111318 CCTGAGAATTTGAATAGTCAAACCATTAGGTAAGACTTGAGAAAGCTGGGT-AA-A-ACAGATGT
131 CCTGAGAATTTGAATAGTCAAACCATTAGGTAAGACTTGAGAAAGCTGGGTAAAGACACAGATGT
*
26111380 TGAGACTGGGTATACAGCTAATTAACTTTAACAAAAAGTAATCATATTTCATTACTTTCCAATTC
196 TGAGACTGGGTATACAGCTAATTAACTTCAACAAAAAGTAATCATATTTCATTACTTTCCAATTC
26111445 TTTTAAAATAGTGTTAGAGCAGTTTGAATCAAATTTTTATTAAAGAAATAAAATATAAATGGTAA
261 TTTTAAAATAGTGTTAGAGCAGTTTGAATCAAATTTTTATTAAAGAAATAAAATATAAATGGTAA
*
26111510 AATAAGGAGATTTGCAGGGATGAGGATCGAGAGTCGAAGAATCCCGTGGTACGATACAGATTATA
326 AATAAAGAGATTTGCAGGGATGAGGATCGAGAGTCGAAGAATCCCGTGGTACGATACAGA--ATA
26111575 TACAAGTGGAATTCGTATAAAAGTATATTTTTACTATTTGATTTTGTTTAAAATAAGATGTTTCT
389 TACAAGTGGAATTCGTATAAAAGTATATTTTTACTATTTGATTTTGTTTAAAATAAGATGTTTCT
26111640 ACTTTACTACATTAGAATAAAATTTTTCAACCTATAAATAGACATAATTATCTTCTCTTATATTC
454 ACTTTACTACATTAGAATAAAATTTTTCAACCTATAAATAGACATAATTATCTTCTCTTATATTC
*
26111705 TTTTAATTTTCGACATTAGTAAATTTTTTTTTTCTATTCGTGATTTTTTCTCGAAAAGATTTCAC
519 TTTTAATTTTCGACATTAGTAAATTTTTTTTTTCTACTCGTGATTTTTTCTCGAAAAGATTTCAC
26111770 GTAAAATTCATGTGTTCTTTCTCTTTTTCGTTTTCTTTGCAATATTTATTTATTGTTGATATTCA
584 GTAAAATTCATGTGTTCTTTCTCTTTTTCGTTTTCTTTGCAATATTTATTTATTGTTGATATTCA
26111835 ATTTTAACAAGTAGTAATATGATTAAAACCAAAACTAGATTGATCTAATTATATATTCCCTGATT
649 ATTTTAACAAGTAGTAATATGATTAAAACCAAAACTAGATTGATCTAATTATATATTCCCTGATT
26111900 AAAACATCAAGCCAAAGGGAATGGCATCCAAT
714 AAAACATCAAGCCAAAGGGAATGGCATCCAAT
26111932 ATTTT
1 ATTTT
26111937 GTATTAAAAA
Statistics
Matches: 732, Mismatches: 15, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
742 194 0.27
744 358 0.49
745 2 0.00
747 178 0.24
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (745 bp):
ATTTTAAAATTTTTATTAATTTAATTAATGATAATTGGATTTGGATATTAACCAAATTTACAGTT
GGAAATTTAATAATACCCCAAGAAATTTAGTATTCAAATTTAATAGCATACAAACTAGTTAAAGC
CCTGAGAATTTGAATAGTCAAACCATTAGGTAAGACTTGAGAAAGCTGGGTAAAGACACAGATGT
TGAGACTGGGTATACAGCTAATTAACTTCAACAAAAAGTAATCATATTTCATTACTTTCCAATTC
TTTTAAAATAGTGTTAGAGCAGTTTGAATCAAATTTTTATTAAAGAAATAAAATATAAATGGTAA
AATAAAGAGATTTGCAGGGATGAGGATCGAGAGTCGAAGAATCCCGTGGTACGATACAGAATATA
CAAGTGGAATTCGTATAAAAGTATATTTTTACTATTTGATTTTGTTTAAAATAAGATGTTTCTAC
TTTACTACATTAGAATAAAATTTTTCAACCTATAAATAGACATAATTATCTTCTCTTATATTCTT
TTAATTTTCGACATTAGTAAATTTTTTTTTTCTACTCGTGATTTTTTCTCGAAAAGATTTCACGT
AAAATTCATGTGTTCTTTCTCTTTTTCGTTTTCTTTGCAATATTTATTTATTGTTGATATTCAAT
TTTAACAAGTAGTAATATGATTAAAACCAAAACTAGATTGATCTAATTATATATTCCCTGATTAA
AACATCAAGCCAAAGGGAATGGCATCCAAT
Found at i:26112746 original size:30 final size:29
Alignment explanation
Indices: 26112712--26112831 Score: 98
Period size: 30 Copynumber: 3.9 Consensus size: 29
26112702 TTTTTTTGTT
*
26112712 TTTTTTTGCTATTTTCGTGTTGTTTTGATG
1 TTTTTTTGCTATTTT-GTGTTGTTTTGCTG
* * *
26112742 TTTTTTTACTGTTTTGGTGTTACTTTTGCTG
1 TTTTTTTGCTATTTT-GTGTT-GTTTTGCTG
* *
26112773 TTATTTTTGTTTTTTGTGTTGTTGTTTTGCTG
1 TT-TTTTTGCTATTT-TG-TGTTGTTTTGCTG
26112805 TTATTTTTATGCTATTTTG-GTTGTTTT
1 -T-TTTTT-TGCTATTTTGTGTTGTTTT
26112832 TGTCGTTCAG
Statistics
Matches: 72, Mismatches: 11, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
30 18 0.25
31 17 0.24
32 18 0.25
33 12 0.17
34 7 0.10
ACGTcount: A:0.07, C:0.06, G:0.19, T:0.68
Consensus pattern (29 bp):
TTTTTTTGCTATTTTGTGTTGTTTTGCTG
Found at i:26112833 original size:32 final size:34
Alignment explanation
Indices: 26112708--26112829 Score: 93
Period size: 32 Copynumber: 3.8 Consensus size: 34
26112698 TTACTTTTTT
* *
26112708 TGTTTTTTTTTGCTATTTTCGTGTTG---TTTTGA
1 TGTTTTTTTATGCTATTTT-GTGTTGTTATTTTGC
*
26112740 TGTTTTTTTA--CTGTTTTG-G-TGTTACTTTTGC
1 TGTTTTTTTATGCTATTTTGTGTTGTTA-TTTTGC
* * *
26112771 TGTTATTTT-TG-TTTTTTGTGTTGTTGTTTTGC
1 TGTTTTTTTATGCTATTTTGTGTTGTTATTTTGC
26112803 TGTTATTTTTATGCTATTTTG-GTTGTT
1 TGTT-TTTTTATGCTATTTTGTGTTGTT
26112830 TTTGTCGTTC
Statistics
Matches: 71, Mismatches: 8, Indels: 20
0.72 0.08 0.20
Matches are distributed among these distances:
27 2 0.03
28 1 0.01
29 1 0.01
30 6 0.08
31 19 0.27
32 20 0.28
33 8 0.11
34 8 0.11
35 6 0.08
ACGTcount: A:0.07, C:0.06, G:0.20, T:0.68
Consensus pattern (34 bp):
TGTTTTTTTATGCTATTTTGTGTTGTTATTTTGC
Found at i:26113013 original size:20 final size:20
Alignment explanation
Indices: 26112968--26113031 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
26112958 AGTATAAAGA
*
26112968 ATTTTTAA-TGTATTTTAATT
1 ATTTTTAAGTGTGTTTTAA-T
* *
26112988 TTTTTTAATGTTTGTTTTAAT
1 ATTTTTAA-GTGTGTTTTAAT
*
26113009 ATTTTTAAGTGTGTTTTTAT
1 ATTTTTAAGTGTGTTTTAAT
26113029 ATT
1 ATT
26113032 ATATATTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 20 0.56
21 8 0.22
22 8 0.22
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.67
Consensus pattern (20 bp):
ATTTTTAAGTGTGTTTTAAT
Found at i:26115098 original size:30 final size:30
Alignment explanation
Indices: 26115062--26115135 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
26115052 CTTCTTCGCA
*
26115062 ACACCAGCCTATCTTCTCCGCAACATCATC
1 ACACCAGCCTATCTTCTCCGCAACACCATC
*
26115092 ACACCAGCCTATCTTCTCCGCCACACCATC
1 ACACCAGCCTATCTTCTCCGCAACACCATC
26115122 ACACCAGCCTATCT
1 ACACCAGCCTATCT
26115136 AAAAGCGATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.26, C:0.46, G:0.07, T:0.22
Consensus pattern (30 bp):
ACACCAGCCTATCTTCTCCGCAACACCATC
Found at i:26115315 original size:16 final size:16
Alignment explanation
Indices: 26115294--26115326 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26115284 ACACGGACAC
26115294 ACAATACAG-ATACGAT
1 ACAATA-AGAATACGAT
26115310 ACAATAAGAATACGAT
1 ACAATAAGAATACGAT
26115326 A
1 A
26115327 ATTTAGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.55, C:0.15, G:0.12, T:0.18
Consensus pattern (16 bp):
ACAATAAGAATACGAT
Found at i:26116190 original size:24 final size:22
Alignment explanation
Indices: 26116139--26116190 Score: 52
Period size: 24 Copynumber: 2.2 Consensus size: 22
26116129 TCTATTTTAA
*
26116139 TTAAAAAAAATAAAGCTTAAAT
1 TTAAAAAAAATAAAGCTTAAAG
26116161 TATAAAAAAATATAAATG-TTAAGAG
1 T-TAAAAAAA-ATAAA-GCTTAA-AG
26116186 TTAAA
1 TTAAA
26116191 TATTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
22 1 0.04
23 8 0.32
24 13 0.52
25 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.29
Consensus pattern (22 bp):
TTAAAAAAAATAAAGCTTAAAG
Found at i:26118737 original size:19 final size:19
Alignment explanation
Indices: 26118715--26118752 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
26118705 ATACTAATGT
26118715 AACTA-ATATATATTTCAAA
1 AACTACATATAT-TTTCAAA
*
26118734 AACTACATTTATTTTCAAA
1 AACTACATATATTTTCAAA
26118753 TATTACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.39
Consensus pattern (19 bp):
AACTACATATATTTTCAAA
Found at i:26119234 original size:30 final size:29
Alignment explanation
Indices: 26119126--26119227 Score: 159
Period size: 29 Copynumber: 3.4 Consensus size: 29
26119116 CAAATAATTT
26119126 TAAAATTATTAAAATTATTTTTTAAAATA
1 TAAAATTATTAAAATTATTTTTTAAAATA
* *
26119155 TAAAATTCTTCAAATTATTTTTTAAAATA
1 TAAAATTATTAAAATTATTTTTTAAAATA
*
26119184 TAAAATTATTAAAATTATTTTTTTGAAATAA
1 TAAAATTATTAAAATTA-TTTTTTAAAAT-A
26119215 TAAAATTATTAAA
1 TAAAATTATTAAA
26119228 TGATTTTAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
29 42 0.64
30 10 0.15
31 14 0.21
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (29 bp):
TAAAATTATTAAAATTATTTTTTAAAATA
Found at i:26120150 original size:11 final size:11
Alignment explanation
Indices: 26120134--26120198 Score: 55
Period size: 11 Copynumber: 6.2 Consensus size: 11
26120124 TATATAAAAA
*
26120134 TTTAAATTAAT
1 TTTAAAATAAT
*
26120145 TTTAAAATAAA
1 TTTAAAATAAT
* **
26120156 TTT-ATATTTT
1 TTTAAAATAAT
26120166 TTTAAAATAAT
1 TTTAAAATAAT
26120177 TTT--AATAAT
1 TTTAAAATAAT
*
26120186 TTTAAAATCAT
1 TTTAAAATAAT
26120197 TT
1 TT
26120199 GTTGACGTGG
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
9 9 0.22
10 6 0.15
11 26 0.63
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTAAAATAAT
Found at i:26120157 original size:22 final size:22
Alignment explanation
Indices: 26120131--26120193 Score: 78
Period size: 20 Copynumber: 3.0 Consensus size: 22
26120121 ATATATATAA
26120131 AAATTTAAATTAATTTTAAAAT
1 AAATTTAAATTAATTTTAAAAT
* *
26120153 AAATTTATATT-TTTTTAAAAT
1 AAATTTAAATTAATTTTAAAAT
*
26120174 -AATTTTAA-TAATTTTAAAAT
1 AAATTTAAATTAATTTTAAAAT
26120194 CATTTGTTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.03
20 15 0.43
21 9 0.26
22 10 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAATTTAAATTAATTTTAAAAT
Found at i:26120170 original size:21 final size:20
Alignment explanation
Indices: 26120131--26120193 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 20
26120121 ATATATATAA
26120131 AAATTTAAATTAATTTTAAAAT
1 AAATTT-AA-TAATTTTAAAAT
**
26120153 AAATTTATATTTTTTTAAAAT
1 AAATTTA-ATAATTTTAAAAT
*
26120174 AATTTTAATAATTTTAAAAT
1 AAATTTAATAATTTTAAAAT
26120194 CATTTGTTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 11 0.31
21 17 0.49
22 7 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATTTAATAATTTTAAAAT
Found at i:26120188 original size:20 final size:21
Alignment explanation
Indices: 26120141--26120198 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
26120131 AAATTTAAAT
*
26120141 TAATTTTAAAATAAATTTATA
1 TAATTTTAAAATAATTTTATA
**
26120162 TTTTTTTAAAATAATTTTA-A
1 TAATTTTAAAATAATTTTATA
*
26120182 TAATTTTAAAATCATTT
1 TAATTTTAAAATAATTT
26120199 GTTGACGTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
TAATTTTAAAATAATTTTATA
Found at i:26124525 original size:13 final size:13
Alignment explanation
Indices: 26124507--26124531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26124497 ATATAATAAG
26124507 GACCCAATCAATT
1 GACCCAATCAATT
26124520 GACCCAATCAAT
1 GACCCAATCAAT
26124532 AAAGCCTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.08, T:0.20
Consensus pattern (13 bp):
GACCCAATCAATT
Found at i:26128001 original size:40 final size:41
Alignment explanation
Indices: 26127925--26128003 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 41
26127915 ACTTTGGTAA
* *
26127925 AATTTGATGTAAGATTTAAAAATCAAAAGATTTAATTATTG
1 AATTTAATGTAAGATTTAAAAATCAAAAGATCTAATTATTG
* **
26127966 AATTTAAT-TAAGTTTTAAAAATCAAGGGATCTAATTAT
1 AATTTAATGTAAGATTTAAAAATCAAAAGATCTAATTAT
26128004 ATAAAAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
40 26 0.79
41 7 0.21
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (41 bp):
AATTTAATGTAAGATTTAAAAATCAAAAGATCTAATTATTG
Found at i:26128612 original size:22 final size:22
Alignment explanation
Indices: 26128582--26128624 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26128572 TTAATTTTTT
* *
26128582 TTCTGCTCTATAGCATGCTCTC
1 TTCTACTCTATAGCACGCTCTC
26128604 TTCTACTCTATAGCACGCTCT
1 TTCTACTCTATAGCACGCTCT
26128625 TTTTTTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.33, G:0.12, T:0.40
Consensus pattern (22 bp):
TTCTACTCTATAGCACGCTCTC
Found at i:26135701 original size:31 final size:30
Alignment explanation
Indices: 26135631--26135716 Score: 113
Period size: 31 Copynumber: 2.9 Consensus size: 30
26135621 GAATAAATCT
*
26135631 TAAAATTATATATG-AACTTTAATTTGGTG
1 TAAAATTATATATGAAATTTTAATTTGGTG
26135660 TAAAATTATATATGAAATTTTAATTGTGGT-
1 TAAAATTATATATGAAATTTTAATT-TGGTG
* *
26135690 TCAAATGTATATTTGAAATTTTAATTT
1 TAAAAT-TATATATGAAATTTTAATTT
26135717 TGATTGAATC
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
29 14 0.27
30 15 0.29
31 22 0.43
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (30 bp):
TAAAATTATATATGAAATTTTAATTTGGTG
Found at i:26139255 original size:31 final size:31
Alignment explanation
Indices: 26139214--26139329 Score: 118
Period size: 31 Copynumber: 3.9 Consensus size: 31
26139204 ACTAACTTAA
26139214 AAAAAGTGTCAAATTTAGGTACCAAATTAGG
1 AAAAAGTGTCAAATTTAGGTACCAAATTAGG
* *
26139245 AAAAATTGTCAAGTTT-GAGTACCAAATT-GG
1 AAAAAGTGTCAAATTTAG-GTACCAAATTAGG
* * *
26139275 ACAAAA--G--AAAATTAGGTGCCAAATTAAG
1 A-AAAAGTGTCAAATTTAGGTACCAAATTAGG
*
26139303 AAAAAGTGTCAAGTTTAGGTACCAAAT
1 AAAAAGTGTCAAATTTAGGTACCAAAT
26139330 ATTATATTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
27 17 0.25
28 3 0.04
29 2 0.03
30 4 0.06
31 42 0.62
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (31 bp):
AAAAAGTGTCAAATTTAGGTACCAAATTAGG
Found at i:26139272 original size:89 final size:89
Alignment explanation
Indices: 26139163--26139329 Score: 203
Period size: 89 Copynumber: 1.9 Consensus size: 89
26139153 AGAAAAAAAA
* * * * *
26139163 GTCAAGTTCAAGTATCAAATTAGACTCCAAA-AAATTTAAGTACTAACTTAA-AAAAAGTGTCAA
1 GTCAAGTTCAAGTACCAAATTAGA--CAAAAGAAAATTAAGTACCAAATTAAGAAAAAGTGTCAA
26139226 ATTTAGGTACCAAATTAGGAAAAATT
64 ATTTAGGTACCAAATTAGGAAAAATT
** * * * *
26139252 GTCAAGTTTGAGTACCAAATTGGACAAAAGAAAATTAGGTGCCAAATTAAGAAAAAGTGTCAAGT
1 GTCAAGTTCAAGTACCAAATTAGACAAAAGAAAATTAAGTACCAAATTAAGAAAAAGTGTCAAAT
26139317 TTAGGTACCAAAT
66 TTAGGTACCAAAT
26139330 ATTATATTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
87 4 0.06
88 15 0.23
89 46 0.71
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (89 bp):
GTCAAGTTCAAGTACCAAATTAGACAAAAGAAAATTAAGTACCAAATTAAGAAAAAGTGTCAAAT
TTAGGTACCAAATTAGGAAAAATT
Found at i:26142076 original size:42 final size:42
Alignment explanation
Indices: 26142005--26142085 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
26141995 GTTTATGCAT
* * *
26142005 AAAAACGCCACTATAGAACATGATATTTAGTGGTGCTTTCCA
1 AAAAACACCACTATAGAACATGACATTTAGCGGTGCTTTCCA
* * *
26142047 AAAAACACTACTATAGAACATGGCCTTTAGCGGTGCTTT
1 AAAAACACCACTATAGAACATGACATTTAGCGGTGCTTT
26142086 TCCCACAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (42 bp):
AAAAACACCACTATAGAACATGACATTTAGCGGTGCTTTCCA
Found at i:26143350 original size:51 final size:51
Alignment explanation
Indices: 26143292--26143433 Score: 194
Period size: 51 Copynumber: 2.8 Consensus size: 51
26143282 CTATAATCGA
* ***
26143292 AAAGGTCCGATGACTAAGAATCATCGTGAGTAAATGAATCCTTTACGGATT
1 AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAAGACGGATT
* * *
26143343 AAAGGTCCGATGATTAAGAGTCATCATGAGTAAATGAATCCAAGATGGATT
1 AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAAGACGGATT
* * *
26143394 AAAGGCCCGATGACTAAGTGTCATCGTGAGTATATGAATC
1 AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATC
26143434 GTGAGTATAT
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAAGACGGATT
Found at i:26143436 original size:15 final size:15
Alignment explanation
Indices: 26143416--26143447 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
26143406 ACTAAGTGTC
26143416 ATCGTGAGTATATGA
1 ATCGTGAGTATATGA
26143431 ATCGTGAGTATATGA
1 ATCGTGAGTATATGA
26143446 AT
1 AT
26143448 TCTTATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (15 bp):
ATCGTGAGTATATGA
Found at i:26150025 original size:51 final size:51
Alignment explanation
Indices: 26149942--26150082 Score: 160
Period size: 51 Copynumber: 2.8 Consensus size: 51
26149932 CTATAAACGA
** * ***
26149942 AAAGGTCTAATGACTAAGAGTCATCGTAAGTAAATGAATCCTTTACAG-ATT
1 AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAGGA-AGAATT
* *
26149993 AAAGGTCCGATGACTAAGAGTCATCATGAGTAAATGAATCCAGGATGAATT
1 AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAGGAAGAATT
* *
26150044 AAAGGTCCGATGACCAA-ATGTCATCGTGAGTATATGAAT
1 AAAGGTCCGATGACTAAGA-GTCATCGTGAGTAAATGAAT
26150083 TCCTATATGG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
50 2 0.03
51 75 0.97
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (51 bp):
AAAGGTCCGATGACTAAGAGTCATCGTGAGTAAATGAATCCAGGAAGAATT
Found at i:26153556 original size:26 final size:25
Alignment explanation
Indices: 26153525--26153615 Score: 101
Period size: 26 Copynumber: 3.4 Consensus size: 25
26153515 TAATATTTTA
26153525 AATTAAATATTTGGATTATTTTTAAT
1 AATTAAATATTT-GATTATTTTTAAT
* *
26153551 AATTAAATATTTAATTAAATATAATTAAAT
1 AATTAAATATTTGATT--AT-T--TTTAAT
26153581 AATTAAATATTTAGATTATTTTTAAT
1 AATTAAATATTT-GATTATTTTTAAT
26153607 AATTAAATA
1 AATTAAATA
26153616 ATTAAACTGA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
25 3 0.05
26 26 0.47
27 2 0.04
28 2 0.04
29 2 0.04
30 17 0.31
31 3 0.05
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (25 bp):
AATTAAATATTTGATTATTTTTAAT
Found at i:26153564 original size:8 final size:8
Alignment explanation
Indices: 26153548--26153621 Score: 53
Period size: 8 Copynumber: 9.2 Consensus size: 8
26153538 GATTATTTTT
26153548 AATAATTA
1 AATAATTA
*
26153556 AATATTTA
1 AATAATTA
*
26153564 ATTAA--A
1 AATAATTA
*
26153570 TATAATTA
1 AATAATTA
26153578 AATAATTA
1 AATAATTA
*
26153586 AATATTTA
1 AATAATTA
* * *
26153594 GATTATTTTT
1 -AATA-ATTA
26153604 AATAATTA
1 AATAATTA
26153612 AATAATTA
1 AATAATTA
26153620 AA
1 AA
26153622 CTGATTTGAT
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
6 4 0.08
8 37 0.74
9 6 0.12
10 3 0.06
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (8 bp):
AATAATTA
Found at i:26153642 original size:34 final size:33
Alignment explanation
Indices: 26153548--26153652 Score: 94
Period size: 34 Copynumber: 3.2 Consensus size: 33
26153538 GATTATTTTT
**
26153548 AATAATTAAATATTTA-ATTAAAT--ATAATTA
1 AATAATTAAATATTTAGATTATTTGAATAATTA
*
26153578 AATAATTAAATATTTAGATTATTTTTAATAATTA
1 AATAATTAAATATTTAGATTA-TTTGAATAATTA
*
26153612 AATAATTAAACTGATTT-GATTGA-TTGAATAACTA
1 AATAATTAAA-T-ATTTAGATT-ATTTGAATAATTA
*
26153646 AACAATT
1 AATAATT
26153653 GCATACAGTA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
30 16 0.25
31 4 0.06
32 1 0.02
34 32 0.51
35 5 0.08
36 5 0.08
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.43
Consensus pattern (33 bp):
AATAATTAAATATTTAGATTATTTGAATAATTA
Found at i:26154496 original size:13 final size:13
Alignment explanation
Indices: 26154478--26154502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26154468 ATTCAATGTC
26154478 AACTACCATTTTG
1 AACTACCATTTTG
26154491 AACTACCATTTT
1 AACTACCATTTT
26154503 CATCAAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.24, G:0.04, T:0.40
Consensus pattern (13 bp):
AACTACCATTTTG
Found at i:26157579 original size:8 final size:8
Alignment explanation
Indices: 26157566--26157619 Score: 76
Period size: 8 Copynumber: 7.0 Consensus size: 8
26157556 CTTGCAACAT
26157566 TCAACTAA
1 TCAACTAA
26157574 TCAACTAA
1 TCAACTAA
*
26157582 TCAAC-AT
1 TCAACTAA
*
26157589 TCAAC-AT
1 TCAACTAA
26157596 TCAACTAA
1 TCAACTAA
26157604 TCAACTAA
1 TCAACTAA
26157612 TCAACTAA
1 TCAACTAA
26157620 CCGACTAACC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
7 13 0.30
8 30 0.70
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (8 bp):
TCAACTAA
Found at i:26157595 original size:30 final size:30
Alignment explanation
Indices: 26157560--26157616 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
26157550 TCCGACCTTG
26157560 CAACATTCAACTAATCAACTAATCAACATT
1 CAACATTCAACTAATCAACTAATCAACATT
26157590 CAACATTCAACTAATCAACTAATCAAC
1 CAACATTCAACTAATCAACTAATCAAC
26157617 TAACCGACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (30 bp):
CAACATTCAACTAATCAACTAATCAACATT
Found at i:26157626 original size:16 final size:16
Alignment explanation
Indices: 26157566--26157632 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 16
26157556 CTTGCAACAT
*
26157566 TCAACTAATCAACTAA
1 TCAACTAACCAACTAA
** *
26157582 TCAAC-ATTCAAC-AT
1 TCAACTAACCAACTAA
*
26157596 TCAACTAATCAACTAA
1 TCAACTAACCAACTAA
*
26157612 TCAACTAACCGACTAA
1 TCAACTAACCAACTAA
*
26157628 CCAAC
1 TCAAC
26157633 CCCCTTCATC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
14 6 0.14
15 12 0.29
16 24 0.57
ACGTcount: A:0.46, C:0.30, G:0.01, T:0.22
Consensus pattern (16 bp):
TCAACTAACCAACTAA
Done.